| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 23:47:55.870556 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 3053294 |
|---|
| sample_rate | None |
|---|
| max_coverage | 196 |
|---|
| mean_coverage | 3.8173257650616375 |
|---|
| min_coverage | 1.526930306024655 |
|---|
| mean_insert | 300 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 200000 |
|---|
| n_analysed_reads | 200000 |
|---|
| n_too_short | 8 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 28 |
|---|
| n_low_cov | 4116 |
|---|
| n_zero_cov | 16558 |
|---|
| n_accepted_reads | 179290 |
|---|
| n_without_junc | 60839 |
|---|
| n_with_junc | 38081 |
|---|
| mean_readlen | 149.99030620781974 |
|---|
| cs_start | 1146 |
|---|
| unobs_fraction | 0.14214265863046227 |
|---|
| raw_fraction | - 0.3716859747924457
- 0.3778693273554298
|
|---|
| adj_fraction | - 0.4793834121797148
- 0.4847503421847581
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 48343 |
|---|
|
|---|