| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 21:41:06.962544 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 1005970 |
|---|
| sample_rate | None |
|---|
| max_coverage | 470 |
|---|
| mean_coverage | 7.197892339965503 |
|---|
| min_coverage | 2.8791569359862015 |
|---|
| mean_insert | 150 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 500000 |
|---|
| n_analysed_reads | 500000 |
|---|
| n_too_short | 0 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 74 |
|---|
| n_low_cov | 8217 |
|---|
| n_zero_cov | 29019 |
|---|
| n_accepted_reads | 462690 |
|---|
| n_without_junc | 225262 |
|---|
| n_with_junc | 22205 |
|---|
| mean_readlen | 140.67281549201408 |
|---|
| cs_start | 2400 |
|---|
| unobs_fraction | 0.013752238009132833 |
|---|
| raw_fraction | - 0.0862126700445293
- 0.08816130859052648
|
|---|
| adj_fraction | - 0.09359923620065919
- 0.09553303595268713
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 46390 |
|---|
|
|---|