| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 05:39:59.018468 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 9334143 |
|---|
| sample_rate | None |
|---|
| max_coverage | 536 |
|---|
| mean_coverage | 9.541132892110092 |
|---|
| min_coverage | 3.8164531568440365 |
|---|
| mean_insert | 400 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 999590 |
|---|
| n_analysed_reads | 999590 |
|---|
| n_too_short | 12 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 239 |
|---|
| n_low_cov | 9336 |
|---|
| n_zero_cov | 73260 |
|---|
| n_accepted_reads | 916743 |
|---|
| n_without_junc | 353123 |
|---|
| n_with_junc | 144414 |
|---|
| mean_readlen | 150.0138119407511 |
|---|
| cs_start | 5248 |
|---|
| unobs_fraction | 0.34541831945454526 |
|---|
| raw_fraction | - 0.2855580475201921
- 0.287839868711326
|
|---|
| adj_fraction | - 0.47385374598394087
- 0.4765554228914918
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 180998 |
|---|
|
|---|