| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 04:34:18.366958 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 6240994 |
|---|
| sample_rate | None |
|---|
| max_coverage | 239 |
|---|
| mean_coverage | 4.1737223864327015 |
|---|
| min_coverage | 1.6694889545730807 |
|---|
| mean_insert | 400 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 199880 |
|---|
| n_analysed_reads | 199880 |
|---|
| n_too_short | 6 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 20 |
|---|
| n_low_cov | 2315 |
|---|
| n_zero_cov | 10032 |
|---|
| n_accepted_reads | 187507 |
|---|
| n_without_junc | 98752 |
|---|
| n_with_junc | 926 |
|---|
| mean_readlen | 150.02510839595323 |
|---|
| cs_start | 807 |
|---|
| unobs_fraction | 0.3315133321082666 |
|---|
| raw_fraction | - 0.007020577465418221
- 0.007932404089307454
|
|---|
| adj_fraction | - 0.011182170016900908
- 0.012581659620645915
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | |
|---|