| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 04:03:51.621735 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 4644819 |
|---|
| sample_rate | None |
|---|
| max_coverage | 524 |
|---|
| mean_coverage | 10.998654104979812 |
|---|
| min_coverage | 4.399461641991925 |
|---|
| mean_insert | 300 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 919928 |
|---|
| n_analysed_reads | 919928 |
|---|
| n_too_short | 27 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 309 |
|---|
| n_low_cov | 10632 |
|---|
| n_zero_cov | 44257 |
|---|
| n_accepted_reads | 864703 |
|---|
| n_without_junc | 490011 |
|---|
| n_with_junc | 5303 |
|---|
| mean_readlen | 159.12095945081722 |
|---|
| cs_start | 3749 |
|---|
| unobs_fraction | 0.09720023678087908 |
|---|
| raw_fraction | - 0.008741989432956496
- 0.00924335179559484
|
|---|
| adj_fraction | - 0.010199281609809221
- 0.010767578130710434
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | |
|---|