| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 03:15:36.322798 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 2388358 |
|---|
| sample_rate | None |
|---|
| max_coverage | 353 |
|---|
| mean_coverage | 6.814369450131106 |
|---|
| min_coverage | 2.7257477800524423 |
|---|
| mean_insert | 250 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 324615 |
|---|
| n_analysed_reads | 324615 |
|---|
| n_too_short | 3 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 36 |
|---|
| n_low_cov | 5120 |
|---|
| n_zero_cov | 24576 |
|---|
| n_accepted_reads | 294880 |
|---|
| n_without_junc | 128827 |
|---|
| n_with_junc | 106760 |
|---|
| mean_readlen | 198.45847124253933 |
|---|
| cs_start | 2001 |
|---|
| unobs_fraction | 0.04969589534079033 |
|---|
| raw_fraction | - 0.44607198532890335
- 0.4498304687918778
|
|---|
| adj_fraction | - 0.4846501904947838
- 0.48784626538014525
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 125223 |
|---|
|
|---|