| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-10 05:37:45.312983 |
|---|
|
|---|
| input_args | | kmer_db | kmer_out/DRR177169/DRR177169.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | - DRR177169_1.fastq.gz
- DRR177169_2.fastq.gz
|
|---|
| enzymes | |
|---|
| seed | 12345 |
|---|
| sample_rate | None |
|---|
| max_coverage | 3784 |
|---|
| mean_coverage | 1.7624793701544867 |
|---|
| min_coverage | 1 |
|---|
| mean_insert | 215 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | 200000 |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 207759 |
|---|
| n_analysed_reads | 207759 |
|---|
| n_too_short | 0 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 61 |
|---|
| n_high_cov | 741 |
|---|
| n_low_cov | 0 |
|---|
| n_zero_cov | 6957 |
|---|
| n_accepted_reads | 200000 |
|---|
| n_without_junc | 13110 |
|---|
| n_with_junc | 90751 |
|---|
| mean_readlen | 151.0 |
|---|
| cs_start | 16687 |
|---|
| unobs_fraction | 0.024833262166387593 |
|---|
| raw_fraction | - 0.5465680951674388
- 0.5621638676240193
|
|---|
| adj_fraction | - 0.5830239653485086
- 0.5976967910839083
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 130652 |
|---|
|
|---|