| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-10 05:24:03.252444 |
|---|
|
|---|
| input_args | | kmer_db | kmer_out/DRR177164/DRR177164.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | - DRR177164_1.fastq.gz
- DRR177164_2.fastq.gz
|
|---|
| enzymes | |
|---|
| seed | 12345 |
|---|
| sample_rate | None |
|---|
| max_coverage | 2833 |
|---|
| mean_coverage | 1.3382846030169762 |
|---|
| min_coverage | 1 |
|---|
| mean_insert | 315 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | 200000 |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 209213 |
|---|
| n_analysed_reads | 209213 |
|---|
| n_too_short | 0 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 24 |
|---|
| n_high_cov | 929 |
|---|
| n_low_cov | 0 |
|---|
| n_zero_cov | 8260 |
|---|
| n_accepted_reads | 200000 |
|---|
| n_without_junc | 36937 |
|---|
| n_with_junc | 67638 |
|---|
| mean_readlen | 127.0 |
|---|
| cs_start | 14426 |
|---|
| unobs_fraction | 0.27749878077749945 |
|---|
| raw_fraction | - 0.40612487721565005
- 0.4142515150417696
|
|---|
| adj_fraction | - 0.5888478453106838
- 0.5985490309198064
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
| GANTC | | name | HinfI |
|---|
| site | GANTC |
|---|
| site_len | 5 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
| GATCANTC | | enz5p | DpnII |
|---|
| enz3p | HinfI |
|---|
| junction | GATCANTC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCA[ACGT]TC |
|---|
| cross | False |
|---|
|
|---|
| GANTGATC | | enz5p | HinfI |
|---|
| enz3p | DpnII |
|---|
| junction | GANTGATC |
|---|
| vestigial | GANT |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GA[ACGT]TGATC |
|---|
| cross | False |
|---|
|
|---|
| GANTANTC | | enz5p | HinfI |
|---|
| enz3p | HinfI |
|---|
| junction | GANTANTC |
|---|
| vestigial | GANT |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GA[ACGT]TA[ACGT]TC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 36184 |
|---|
| DpnII/HinfI GATCAATC | 5925 |
|---|
| DpnII/HinfI GATCACTC | 5354 |
|---|
| DpnII/HinfI GATCAGTC | 4257 |
|---|
| DpnII/HinfI GATCATTC | 542 |
|---|
| HinfI/DpnII GAATGATC | 663 |
|---|
| HinfI/DpnII GACTGATC | 4304 |
|---|
| HinfI/DpnII GAGTGATC | 5444 |
|---|
| HinfI/DpnII GATTGATC | 5625 |
|---|
| HinfI/HinfI GAATAATC | 419 |
|---|
| HinfI/HinfI GACTAATC | 921 |
|---|
| HinfI/HinfI GAGTAATC | 1128 |
|---|
| HinfI/HinfI GATTAATC | 1162 |
|---|
| HinfI/HinfI GAATACTC | 244 |
|---|
| HinfI/HinfI GACTACTC | 1163 |
|---|
| HinfI/HinfI GAGTACTC | 1061 |
|---|
| HinfI/HinfI GATTACTC | 1062 |
|---|
| HinfI/HinfI GAATAGTC | 342 |
|---|
| HinfI/HinfI GACTAGTC | 803 |
|---|
| HinfI/HinfI GAGTAGTC | 1114 |
|---|
| HinfI/HinfI GATTAGTC | 900 |
|---|
| HinfI/HinfI GAATATTC | 276 |
|---|
| HinfI/HinfI GACTATTC | 332 |
|---|
| HinfI/HinfI GAGTATTC | 232 |
|---|
| HinfI/HinfI GATTATTC | 377 |
|---|
|
|---|