| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-10 05:17:28.602623 |
|---|
|
|---|
| input_args | | kmer_db | kmer_out/DRR177162/DRR177162.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | - DRR177162_1.fastq.gz
- DRR177162_2.fastq.gz
|
|---|
| enzymes | |
|---|
| seed | 12345 |
|---|
| sample_rate | None |
|---|
| max_coverage | 2380 |
|---|
| mean_coverage | 1.302848272415661 |
|---|
| min_coverage | 1 |
|---|
| mean_insert | 549 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | 200000 |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 205600 |
|---|
| n_analysed_reads | 205600 |
|---|
| n_too_short | 0 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 1620 |
|---|
| n_low_cov | 0 |
|---|
| n_zero_cov | 3980 |
|---|
| n_accepted_reads | 200000 |
|---|
| n_without_junc | 94534 |
|---|
| n_with_junc | 8396 |
|---|
| mean_readlen | 127.0 |
|---|
| cs_start | 2030 |
|---|
| unobs_fraction | 0.5787856718014306 |
|---|
| raw_fraction | - 0.04711106898064989
- 0.049112628073631495
|
|---|
| adj_fraction | - 0.1152820616417779
- 0.11982613518852467
|
|---|
| digestion | | cutsites | | GATC | | name | Sau3AI |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
| AATT | | name | MluCI |
|---|
| site | AATT |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | Sau3AI |
|---|
| enz3p | Sau3AI |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
| GATCAATT | | enz5p | Sau3AI |
|---|
| enz3p | MluCI |
|---|
| junction | GATCAATT |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCAATT |
|---|
| cross | False |
|---|
|
|---|
| AATTGATC | | enz5p | MluCI |
|---|
| enz3p | Sau3AI |
|---|
| junction | AATTGATC |
|---|
| vestigial | AATT |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | AATTGATC |
|---|
| cross | False |
|---|
|
|---|
| AATTAATT | | enz5p | MluCI |
|---|
| enz3p | MluCI |
|---|
| junction | AATTAATT |
|---|
| vestigial | AATT |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | AATTAATT |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | Sau3AI/Sau3AI GATCGATC | 8616 |
|---|
| Sau3AI/MluCI GATCAATT | 170 |
|---|
| MluCI/Sau3AI AATTGATC | 157 |
|---|
| MluCI/MluCI AATTAATT | 1016 |
|---|
|
|---|