| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-10 05:10:53.504672 |
|---|
|
|---|
| input_args | | kmer_db | kmer_out/DRR177160/DRR177160.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | - DRR177160_1.fastq.gz
- DRR177160_2.fastq.gz
|
|---|
| enzymes | |
|---|
| seed | 12345 |
|---|
| sample_rate | None |
|---|
| max_coverage | 2463 |
|---|
| mean_coverage | 1.4623554159940908 |
|---|
| min_coverage | 1 |
|---|
| mean_insert | 215 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | 200000 |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 210679 |
|---|
| n_analysed_reads | 210679 |
|---|
| n_too_short | 0 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 296 |
|---|
| n_high_cov | 598 |
|---|
| n_low_cov | 0 |
|---|
| n_zero_cov | 9785 |
|---|
| n_accepted_reads | 200000 |
|---|
| n_without_junc | 24753 |
|---|
| n_with_junc | 80579 |
|---|
| mean_readlen | 127.0 |
|---|
| cs_start | 12204 |
|---|
| unobs_fraction | 0.04519328917019394 |
|---|
| raw_fraction | - 0.48748204679277773
- 0.49826182488833226
|
|---|
| adj_fraction | - 0.5387749207297957
- 0.5486390463766362
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 108151 |
|---|
|
|---|