| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-10 05:04:51.352458 |
|---|
|
|---|
| input_args | | kmer_db | kmer_out/DRR177157/DRR177157.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | - DRR177157_1.fastq.gz
- DRR177157_2.fastq.gz
|
|---|
| enzymes | |
|---|
| seed | 12345 |
|---|
| sample_rate | None |
|---|
| max_coverage | 2744 |
|---|
| mean_coverage | 1.652311099503155 |
|---|
| min_coverage | 1 |
|---|
| mean_insert | 214 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | 200000 |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 206932 |
|---|
| n_analysed_reads | 206932 |
|---|
| n_too_short | 0 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 325 |
|---|
| n_high_cov | 658 |
|---|
| n_low_cov | 0 |
|---|
| n_zero_cov | 5949 |
|---|
| n_accepted_reads | 200000 |
|---|
| n_without_junc | 42883 |
|---|
| n_with_junc | 60665 |
|---|
| mean_readlen | 127.0 |
|---|
| cs_start | 24 |
|---|
| unobs_fraction | 0.031005836405579412 |
|---|
| raw_fraction | - 0.400133889261637
- 0.40713228547966795
|
|---|
| adj_fraction | - 0.42822115335810534
- 0.4343688134489929
|
|---|
| digestion | | cutsites | | AAGCTT | | name | HindIII |
|---|
| site | AAGCTT |
|---|
| site_len | 6 |
|---|
|
|---|
|
|---|
| junctions | | AAGCTAGCTT | | enz5p | HindIII |
|---|
| enz3p | HindIII |
|---|
| junction | AAGCTAGCTT |
|---|
| vestigial | AAGCT |
|---|
| junc_len | 10 |
|---|
| vest_len | 5 |
|---|
| pattern | AAGCTAGCTT |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | HindIII/HindIII AAGCTAGCTT | 78712 |
|---|
|
|---|