mode	bam
runtime_info	qc3C_version qc3C 0.5rc10 run_timestamp 2021-02-10 05:01:41.603740
input_args	bam_file DRR177169.bam fasta_file GCF_000230535.1_PelSin_1.0_genomic.fna.gz enzymes DpnII seed 12345 sample_rate None min_mapq 60 max_obs 200000
n_parsed_reads	820354
n_analysed_reads	820354
n_accepted_reads	570443
n_skipped_reads	0
n_unmapped	0
n_low_mapq	174237
n_ref_len	1554
n_secondary	0
n_supplementary	0
n_duplicate	0
n_weak_mapping	74616
n_ref_term	75
n_analysed_pairs	200000
n_accepted_pairs	200000
n_trans_pairs	116261
n_cis_pairs	83739
n_fully_aligned	126565
n_align_term	273435
n_no_site_end	159605
n_short_inserts	7057
classification	informative fr 19958 rf 19439 ffrr 39243 uninformative religation 347 dangling_ends 3501 self_circle 646 ffrr 952
obs_insert_mean	217.77244772447725
obs_insert_median	215.0
mean_readlen	151.0
unobs_fraction	0.0
digest_stats	cs_start 29950 cs_term 240395 cs_full 1610 read_thru 230654 is_split 187976 vestigial GATC
separation_bins	bins 1000 5000 10000 counts 76682 66711 59476 vs_all_cis 91.57262446410871 79.66538888689858 71.02544811855886 vs_accepted 38.340999999999994 33.3555 29.738
digestion	cutsites GATC name DpnII site GATC site_len 4 junctions GATCGATC enz5p DpnII enz3p DpnII junction GATCGATC vestigial GATC junc_len 8 vest_len 4 pattern GATCGATC cross True
junction_frequency	DpnII/DpnII GATCGATC 230654
remnant_frequency	DpnII GATC 240395