mode	bam
runtime_info	qc3C_version qc3C 0.5rc10 run_timestamp 2021-02-10 05:01:32.150736
input_args	bam_file DRR177168.bam fasta_file GCF_000230535.1_PelSin_1.0_genomic.fna.gz enzymes HindIII seed 12345 sample_rate None min_mapq 60 max_obs 200000
n_parsed_reads	692429
n_analysed_reads	692429
n_accepted_reads	528163
n_skipped_reads	0
n_unmapped	0
n_low_mapq	98064
n_ref_len	788
n_secondary	0
n_supplementary	0
n_duplicate	0
n_weak_mapping	65699
n_ref_term	38
n_analysed_pairs	200000
n_accepted_pairs	200000
n_trans_pairs	120270
n_cis_pairs	79730
n_fully_aligned	138821
n_align_term	261179
n_no_site_end	184280
n_short_inserts	11670
classification	informative fr 17782 rf 15444 ffrr 33638 uninformative religation 1490 dangling_ends 9089 self_circle 2101 ffrr 1676
obs_insert_mean	226.7813692480359
obs_insert_median	225.0
mean_readlen	151.0
unobs_fraction	0.0
digest_stats	cs_start 26 cs_term 215720 cs_full 1436 read_thru 184162 is_split 149876 vestigial AAGCT
separation_bins	bins 1000 5000 10000 counts 68060 58555 50948 vs_all_cis 85.36310046406622 73.44161545215101 63.90066474350934 vs_accepted 34.03 29.2775 25.474000000000004
digestion	cutsites AAGCTT name HindIII site AAGCTT site_len 6 junctions AAGCTAGCTT enz5p HindIII enz3p HindIII junction AAGCTAGCTT vestigial AAGCT junc_len 10 vest_len 5 pattern AAGCTAGCTT cross True
junction_frequency	HindIII/HindIII AAGCTAGCTT 184162
remnant_frequency	HindIII AAGCT 215720