mode	bam
runtime_info	qc3C_version qc3C 0.5rc10 run_timestamp 2021-02-10 05:01:24.391543
input_args	bam_file DRR177167.bam fasta_file GCF_000230535.1_PelSin_1.0_genomic.fna.gz enzymes HindIII seed 12345 sample_rate None min_mapq 60 max_obs 200000
n_parsed_reads	690380
n_analysed_reads	690380
n_accepted_reads	525594
n_skipped_reads	0
n_unmapped	0
n_low_mapq	102520
n_ref_len	865
n_secondary	0
n_supplementary	0
n_duplicate	0
n_weak_mapping	61696
n_ref_term	51
n_analysed_pairs	200000
n_accepted_pairs	200000
n_trans_pairs	111923
n_cis_pairs	88077
n_fully_aligned	143944
n_align_term	256056
n_no_site_end	198938
n_short_inserts	17340
classification	informative fr 18056 rf 16592 ffrr 35073 uninformative religation 1419 dangling_ends 14159 self_circle 2517 ffrr 1680
obs_insert_mean	218.66843300529902
obs_insert_median	216.0
mean_readlen	151.0
unobs_fraction	0.0
digest_stats	cs_start 55 cs_term 201062 cs_full 1401 read_thru 169103 is_split 137642 vestigial AAGCT
separation_bins	bins 1000 5000 10000 counts 70737 62890 56866 vs_all_cis 80.31268094962363 71.40343108870647 64.56396107950998 vs_accepted 35.368500000000004 31.445 28.433000000000003
digestion	cutsites AAGCTT name HindIII site AAGCTT site_len 6 junctions AAGCTAGCTT enz5p HindIII enz3p HindIII junction AAGCTAGCTT vestigial AAGCT junc_len 10 vest_len 5 pattern AAGCTAGCTT cross True
junction_frequency	HindIII/HindIII AAGCTAGCTT 169103
remnant_frequency	HindIII AAGCT 201062