mode	bam
runtime_info	qc3C_version qc3C 0.5rc10 run_timestamp 2021-02-10 04:59:51.338990
input_args	bam_file DRR177160.bam fasta_file GCF_000230535.1_PelSin_1.0_genomic.fna.gz enzymes DpnII seed 12345 sample_rate None min_mapq 60 max_obs 200000
n_parsed_reads	873729
n_analysed_reads	873729
n_accepted_reads	588667
n_skipped_reads	0
n_unmapped	0
n_low_mapq	201073
n_ref_len	1999
n_secondary	0
n_supplementary	0
n_duplicate	0
n_weak_mapping	82445
n_ref_term	112
n_analysed_pairs	200000
n_accepted_pairs	200000
n_trans_pairs	115953
n_cis_pairs	84047
n_fully_aligned	184683
n_align_term	215317
n_no_site_end	208112
n_short_inserts	15800
classification	informative fr 18301 rf 16772 ffrr 34921 uninformative religation 535 dangling_ends 11909 self_circle 1699 ffrr 445
obs_insert_mean	217.53166606693054
obs_insert_median	215.0
mean_readlen	127.0
unobs_fraction	0.0
digest_stats	cs_start 15758 cs_term 191888 cs_full 1952 read_thru 184143 is_split 135420 vestigial GATC
separation_bins	bins 1000 5000 10000 counts 68247 56067 47300 vs_all_cis 81.20099468154723 66.70910323985389 56.278034909038986 vs_accepted 34.1235 28.0335 23.65
digestion	cutsites GATC name DpnII site GATC site_len 4 junctions GATCGATC enz5p DpnII enz3p DpnII junction GATCGATC vestigial GATC junc_len 8 vest_len 4 pattern GATCGATC cross True
junction_frequency	DpnII/DpnII GATCGATC 184143
remnant_frequency	DpnII GATC 191888