mode	bam
runtime_info	qc3C_version qc3C 0.5rc10 run_timestamp 2021-02-10 04:59:41.934790
input_args	bam_file DRR177159.bam fasta_file GCF_000230535.1_PelSin_1.0_genomic.fna.gz enzymes DpnII seed 12345 sample_rate None min_mapq 60 max_obs 200000
n_parsed_reads	824770
n_analysed_reads	824770
n_accepted_reads	572655
n_skipped_reads	0
n_unmapped	0
n_low_mapq	180078
n_ref_len	1581
n_secondary	0
n_supplementary	0
n_duplicate	0
n_weak_mapping	70928
n_ref_term	84
n_analysed_pairs	200000
n_accepted_pairs	200000
n_trans_pairs	117446
n_cis_pairs	82554
n_fully_aligned	174752
n_align_term	225248
n_no_site_end	195898
n_short_inserts	6103
classification	informative fr 20456 rf 18978 ffrr 39140 uninformative religation 424 dangling_ends 3255 self_circle 408 ffrr 317
obs_insert_mean	219.03027656477437
obs_insert_median	216.0
mean_readlen	127.0
unobs_fraction	0.0
digest_stats	cs_start 33470 cs_term 204102 cs_full 2045 read_thru 196491 is_split 145894 vestigial GATC
separation_bins	bins 1000 5000 10000 counts 76451 66315 59084 vs_all_cis 92.60726312474259 80.32923904353514 71.57012379775662 vs_accepted 38.225500000000004 33.1575 29.542
digestion	cutsites GATC name DpnII site GATC site_len 4 junctions GATCGATC enz5p DpnII enz3p DpnII junction GATCGATC vestigial GATC junc_len 8 vest_len 4 pattern GATCGATC cross True
junction_frequency	DpnII/DpnII GATCGATC 196491
remnant_frequency	DpnII GATC 204102