.codecov.yml
.gitignore
.lgtm.yml
.travis.yml
CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
.github/CONTRIBUTING.md
.github/PULL_REQUEST_TEMPLATE.md
devtools/README.md
devtools/conda-envs/test_env.yaml
devtools/scripts/create_conda_env.py
devtools/travis-ci/before_install.sh
docs/Makefile
docs/README.md
docs/conf.py
docs/examples.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/pfasta.rst
docs/read_fasta.rst
docs/write_fasta.rst
docs/_static/README.md
docs/_templates/README.md
docs/autosummary/protfasta.protfasta.rst
docs/autosummary/protfasta.rst
protfasta/__init__.py
protfasta/_configs.py
protfasta/_version.py
protfasta/io.py
protfasta/protfasta.py
protfasta/protfasta_exceptions.py
protfasta/utilities.py
protfasta.egg-info/PKG-INFO
protfasta.egg-info/SOURCES.txt
protfasta.egg-info/dependency_links.txt
protfasta.egg-info/top_level.txt
protfasta/data/README.md
protfasta/data/look_and_say.dat
protfasta/data/test_data/aligned_seq_all_valid.fasta
protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta
protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta
protfasta/data/test_data/fixable_invalid.fasta
protfasta/data/test_data/test_data_with_bad_chars.fa
protfasta/data/test_data/test_data_with_nonstandard_chars.fa
protfasta/data/test_data/testset_1.fasta
protfasta/data/test_data/testset_duplicate.fasta
protfasta/data/test_data/testset_duplicate_seqs.fasta
protfasta/data/test_data/unfixable_invalid.fasta
protfasta/tests/__init__.py
protfasta/tests/conftest.py
protfasta/tests/test_protfasta.py
protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta
protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta
protfasta/tests/pfasta_test/input_test.fasta
protfasta/tests/pfasta_test/run_coverage_tests.sh
scripts/pfasta