Metadata-Version: 2.1
Name: protfasta
Version: 0.1.9
Summary: UNKNOWN
Home-page: UNKNOWN
Author: Alex Holehouse
Author-email: alex.holehouse@wustl.edu
License: MIT
Description: protfasta
        ==============================
        [//]: # (Badges)
        [![Build Status](https://travis-ci.org/holehouse-lab/protfasta.svg?branch=master)](https://travis-ci.org/holehouse-lab/protfasta)
        
        ## Release 0.1.9 (Sept 2021)
        
        ## Overview
        protfasta - a robust parser for protein-based FASTA files.
        
        ## Documentation
        
        For all documentation see [https://protfasta.readthedocs.io/en/latest/](https://protfasta.readthedocs.io/en/latest/).
        
        For code see [https://github.com/holehouse-lab/protfasta](https://github.com/holehouse-lab/protfasta).
        
        
        ## Installation
        
        `protfasta` has been tested on Linux and macOS. It should also work on Windows but we haven't tested it there yet. 
        
        `protfasta` can be downloaded and installed directly from PyPI using **pip**:
        
            pip install protfasta
        
        If this has worked, the `pfasta` command-line tool should be available from the command-line
        
            pfasta --help
        
        And you're done. This also means you can now ``import`` and use **protfasta** in your Python workflow. 
        
        ## Simple example
        
        	import protfasta
        
        	# sequences is now a dictionary where keys are FASTA headers and values are sequences.
            sequences = protfasta.read_fasta('inputfile.fasta')
        
        
        ## Errors and help
        For bug reports or errors please raise an issue on this github repository (see the [Issues](https://github.com/holehouse-lab/protfasta/issues) tab at the top).
        
        ## Changelog
        * **0.1.9** (Sept 12th 2021) - added in robustness for whitespace in sequence files, which, bizarrely, was not present (i.e. added as an invalid residue type but can now be converted).
        
        
        ## Copyright
        
        Copyright (c) 2020-2021, Alex Holehouse  - [Holehouse lab](http://holehouse.wustl.edu/). `protfasta` is released under the MIT license. The codebase is well structured and relatively simple, lending it to feature addition. We welcome pull-requests assuming contributed code maintains an appropriate level of clarity and robustness. 
        
        
        #### Acknowledgements
         
        Many of the software-engineering tools and approaches used in the development of `protfasta` come from resources developed by the [Molecular Sciences Software Institute](https://molssi.org/).
        
Platform: UNKNOWN
Requires-Python: >=3.6
Description-Content-Type: text/markdown
