sample	run_id	barcode	chrom	pos	ref	alt	consensus_base	case	description	status	homopolymer	in_consensus	unambig	ont_depth	illumina_depth	ont_depth_thresh	illumina_depth_thresh	ont_AF	illumina_AF	ont_alleles	illumina_alleles	ont_strand_counts	medaka_qual	nanopolish_qual	illumina_support	depth_flag	ntc_flag	vc_flag	mixed_flag	maf_flag	sb_flag	key_flag	new_flag
MDHP-00006	artic-pipeline	NB04	MN908947.3	119	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	199	22	20	0.02040816326530612	0.0	A:2:C:96:G:0:T:0:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	0,39,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	93	199	22	20	0.967741935483871	1.0	A:0:C:0:G:0:T:90:N:0:O:3	A:0:C:0:G:0:T:199:N:0:O:0	36,39,54,54	66.227	1745.0	yes	.	.	.	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	199	22	20	0.029850746268656716	0.0	A:0:C:62:G:0:T:2:N:0:O:3	A:0:C:199:G:0:T:0:N:0:O:0	2,11,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	319	22	20	0.03409090909090909	0.0	A:0:C:3:G:0:T:84:N:0:O:1	A:0:C:0:G:0:T:319:N:0:O:0	0,53,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	652	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	202	22	20	0.022727272727272728	0.0	A:122:C:0:G:3:T:0:N:0:O:7	A:202:C:0:G:0:T:0:N:0:O:0	2,54,1,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	654	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	202	22	20	0.02727272727272727	0.0	A:3:C:0:G:107:T:0:N:0:O:0	A:0:C:0:G:202:T:0:N:0:O:0	3,36,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	835	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	196	22	20	0.021052631578947368	0.0	A:0:C:89:G:2:T:1:N:0:O:3	A:0:C:196:G:0:T:0:N:0:O:0	0,53,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	203	22	20	0.02857142857142857	0.0	A:3:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:203:T:0:N:0:O:0	3,50,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	203	22	20	0.021739130434782608	0.0	A:122:C:0:G:0:T:3:N:0:O:13	A:203:C:0:G:0:T:0:N:0:O:0	3,83,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	203	22	20	0.028037383177570093	0.0	A:0:C:95:G:0:T:3:N:0:O:9	A:0:C:203:G:0:T:0:N:0:O:0	0,57,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	278	22	20	0.07207207207207207	0.0	A:0:C:102:G:0:T:8:N:0:O:1	A:0:C:278:G:0:T:0:N:0:O:0	0,47,8,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	200	22	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	2,9,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	200	22	20	0.022988505747126436	0.0	A:2:C:0:G:81:T:0:N:0:O:4	A:0:C:0:G:200:T:0:N:0:O:0	0,67,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	1749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	200	22	20	0.022222222222222223	0.0	A:87:C:0:G:0:T:2:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	0,61,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	200	22	20	0.038834951456310676	0.0	A:0:C:4:G:0:T:95:N:0:O:4	A:0:C:0:G:0:T:200:N:0:O:0	0,70,4,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	196	22	20	0.034782608695652174	0.0	A:4:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:195:T:1:N:0:O:0	4,44,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	196	22	20	0.03409090909090909	0.0	A:3:C:0:G:83:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	3,17,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	2200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	196	22	20	0.03571428571428571	0.0	A:0:C:4:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,52,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	2320	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	200	22	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	0,44,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	125	199	22	20	0.992	0.9949748743718593	A:0:C:0:G:0:T:124:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:1	50,51,74,74	280.0	1298.9	yes	.	.	.	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	200	22	20	0.03225806451612903	0.0	A:3:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,18,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	2557	A	G	A	16	ignore low frequency variant	Pass	False	False	True	276	394	22	20	0.021739130434782608	0.0	A:270:C:0:G:6:T:0:N:0:O:0	A:394:C:0:G:0:T:0:N:0:O:0	6,133,0,143	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	198	22	20	0.051470588235294115	0.0	A:129:C:0:G:7:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	7,73,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	198	22	20	0.02112676056338028	0.0	A:138:C:0:G:3:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	3,77,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	195	22	20	0.02702702702702703	0.0	A:108:C:0:G:3:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	3,44,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	120	195	22	20	0.7666666666666667	1.0	A:0:C:0:G:0:T:92:N:0:O:28	A:0:C:0:G:0:T:195:N:0:O:0	49,77,43,43	64.466	1500.9	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	3094	A	G	G	13	new position validated by illumina	Pass	False	True	True	91	195	22	20	1.0	1.0	A:0:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	57,57,34,34	350.0	1135.8	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	195	22	20	0.05405405405405406	0.0	A:1:C:0:G:97:T:6:N:0:O:7	A:0:C:0:G:195:T:0:N:0:O:0	1,66,5,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	3159	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	195	22	20	0.024096385542168676	0.0	A:0:C:81:G:0:T:2:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,59,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	199	22	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,52,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	199	22	20	0.022727272727272728	0.0	A:121:C:0:G:3:T:0:N:0:O:8	A:199:C:0:G:0:T:0:N:0:O:0	3,38,0,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	199	22	20	0.06060606060606061	0.0	A:93:C:0:G:6:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,56,6,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	199	22	20	0.04040404040404041	0.0	A:95:C:0:G:0:T:4:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,57,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	199	22	20	0.027522935779816515	0.0	A:3:C:0:G:104:T:0:N:0:O:2	A:0:C:0:G:199:T:0:N:0:O:0	1,32,2,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	199	22	20	0.02564102564102564	0.0	A:0:C:76:G:0:T:2:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	0,32,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	199	22	20	0.041666666666666664	0.0	A:69:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,27,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	197	22	20	0.11764705882352941	0.0	A:0:C:75:G:0:T:10:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,59,10,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	186	22	20	0.022727272727272728	0.0	A:0:C:0:G:2:T:63:N:0:O:23	A:0:C:0:G:0:T:186:N:0:O:0	1,48,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	186	22	20	0.03669724770642202	0.0	A:4:C:0:G:103:T:0:N:0:O:2	A:0:C:0:G:186:T:0:N:0:O:0	1,74,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	236	386	22	20	0.025423728813559324	0.0	A:229:C:0:G:6:T:0:N:0:O:1	A:386:C:0:G:0:T:0:N:0:O:0	6,94,0,142	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	278	386	22	20	0.02158273381294964	0.0	A:6:C:0:G:251:T:0:N:0:O:21	A:0:C:0:G:386:T:0:N:0:O:0	6,131,0,147	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	199	22	20	0.04838709677419355	0.0	A:0:C:54:G:0:T:3:N:0:O:5	A:0:C:199:G:0:T:0:N:0:O:0	0,42,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	199	22	20	0.02702702702702703	0.0	A:3:C:0:G:0:T:88:N:0:O:20	A:0:C:0:G:0:T:199:N:0:O:0	0,57,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	229	398	22	20	0.021834061135371178	0.0	A:0:C:0:G:217:T:5:N:0:O:7	A:1:C:0:G:397:T:0:N:0:O:0	0,146,5,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	146	196	22	20	0.03424657534246575	0.0	A:0:C:0:G:5:T:140:N:0:O:1	A:0:C:0:G:0:T:196:N:0:O:0	0,90,5,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	194	22	20	0.029411764705882353	0.0	A:2:C:0:G:66:T:0:N:0:O:0	A:0:C:0:G:193:T:1:N:0:O:0	2,26,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	193	22	20	0.025	0.0	A:78:C:2:G:0:T:0:N:0:O:0	A:193:C:0:G:0:T:0:N:0:O:0	2,48,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	194	22	20	0.022058823529411766	0.0	A:122:C:0:G:1:T:3:N:0:O:10	A:194:C:0:G:0:T:0:N:0:O:0	0,91,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	5555	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	195	22	20	0.02	0.0	A:2:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:195:T:0:N:0:O:0	2,53,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	198	22	20	0.08974358974358974	0.0	A:0:C:71:G:0:T:7:N:0:O:0	A:1:C:197:G:0:T:0:N:0:O:0	0,61,7,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	197	22	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:90:N:0:O:5	A:0:C:0:G:0:T:197:N:0:O:0	0,51,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	197	22	20	0.03260869565217391	0.0	A:0:C:76:G:0:T:3:N:0:O:13	A:0:C:197:G:0:T:0:N:0:O:0	0,74,3,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	197	22	20	0.031746031746031744	0.0	A:0:C:120:G:0:T:4:N:0:O:2	A:1:C:196:G:0:T:0:N:0:O:0	0,69,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	197	22	20	0.08235294117647059	0.0	A:0:C:78:G:0:T:7:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,61,7,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6135	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	197	22	20	0.029197080291970802	0.0	A:0:C:4:G:0:T:133:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,57,4,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	197	22	20	0.017857142857142856	0.0	A:0:C:2:G:0:T:97:N:0:O:13	A:0:C:0:G:0:T:197:N:0:O:0	1,47,1,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6195	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	197	22	20	0.02702702702702703	0.0	A:1:C:106:G:0:T:3:N:0:O:1	A:1:C:196:G:0:T:0:N:0:O:0	2,61,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	178	22	20	0.04081632653061224	0.0056179775280898875	A:0:C:94:G:0:T:4:N:0:O:0	A:0:C:177:G:0:T:1:N:0:O:0	0,68,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	178	22	20	0.04201680672268908	0.0	A:0:C:111:G:0:T:5:N:0:O:3	A:0:C:178:G:0:T:0:N:0:O:0	0,70,5,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6312	C	A	C	16	ignore low frequency variant	Pass	False	False	True	108	178	22	20	0.027777777777777776	0.0	A:3:C:97:G:0:T:1:N:0:O:7	A:0:C:178:G:0:T:0:N:0:O:0	0,73,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	6313	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	178	22	20	0.024096385542168676	0.0	A:81:C:0:G:0:T:2:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	0,67,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	178	22	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:0	0,69,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6427	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	178	22	20	0.01904761904761905	0.0	A:1:C:2:G:0:T:91:N:0:O:11	A:0:C:0:G:0:T:178:N:0:O:0	0,47,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	6539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	192	22	20	0.020202020202020204	0.0	A:0:C:96:G:0:T:2:N:0:O:1	A:1:C:191:G:0:T:0:N:0:O:0	1,40,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6626	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	193	22	20	0.02608695652173913	0.0	A:102:C:3:G:0:T:0:N:0:O:10	A:193:C:0:G:0:T:0:N:0:O:0	1,47,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	193	22	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:193:T:0:N:0:O:0	2,42,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	193	22	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:193:N:0:O:0	1,55,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	193	22	20	0.02	0.0	A:0:C:97:G:0:T:2:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,50,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	194	22	20	0.030612244897959183	0.0	A:3:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	3,35,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	7030	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	192	22	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:94:N:0:O:5	A:0:C:0:G:0:T:192:N:0:O:0	0,58,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	159	22	20	0.021505376344086023	0.0	A:86:C:0:G:2:T:0:N:0:O:5	A:159:C:0:G:0:T:0:N:0:O:0	2,37,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	7223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	159	22	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:159:T:0:N:0:O:0	2,52,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	194	22	20	0.023809523809523808	0.005154639175257732	A:0:C:81:G:0:T:2:N:0:O:1	A:0:C:193:G:0:T:1:N:0:O:0	0,62,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	196	22	20	0.041237113402061855	0.0	A:0:C:4:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:196:N:0:O:0	0,53,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	8275	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	200	22	20	0.03296703296703297	0.0	A:0:C:3:G:0:T:87:N:0:O:1	A:0:C:0:G:0:T:200:N:0:O:0	1,50,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	201	22	20	0.0234375	0.0	A:3:C:0:G:125:T:0:N:0:O:0	A:0:C:0:G:201:T:0:N:0:O:0	2,44,1,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	8628	A	G	A	16	ignore low frequency variant	Pass	False	False	True	195	392	22	20	0.020512820512820513	0.0	A:191:C:0:G:4:T:0:N:0:O:0	A:392:C:0:G:0:T:0:N:0:O:0	4,103,0,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	56	197	22	20	0.16071428571428573	0.0	A:9:C:0:G:47:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	9,15,0,41	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	191	22	20	0.045454545454545456	0.0	A:4:C:0:G:0:T:78:N:0:O:6	A:0:C:0:G:0:T:191:N:0:O:0	4,37,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	191	22	20	0.023529411764705882	0.0	A:0:C:82:G:0:T:2:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,35,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	185	22	20	0.038834951456310676	0.0	A:0:C:99:G:0:T:4:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,67,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	185	22	20	0.023076923076923078	0.005405405405405406	A:0:C:0:G:125:T:3:N:0:O:2	A:0:C:0:G:184:T:1:N:0:O:0	0,68,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	366	22	20	0.021505376344086023	0.0	A:0:C:176:G:0:T:4:N:0:O:6	A:0:C:366:G:0:T:0:N:0:O:0	0,140,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	366	22	20	0.020512820512820513	0.0	A:0:C:191:G:0:T:4:N:0:O:0	A:0:C:366:G:0:T:0:N:0:O:0	0,157,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	189	366	22	20	0.021164021164021163	0.0	A:1:C:4:G:0:T:184:N:0:O:0	A:0:C:0:G:0:T:366:N:0:O:0	0,147,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	9951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	190	22	20	0.036036036036036036	0.0	A:0:C:106:G:0:T:4:N:0:O:1	A:0:C:190:G:0:T:0:N:0:O:0	0,63,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	190	22	20	0.046875	0.0	A:3:C:0:G:61:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	3,18,0,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	190	22	20	0.030612244897959183	0.0	A:0:C:84:G:0:T:3:N:0:O:11	A:0:C:190:G:0:T:0:N:0:O:0	3,32,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	177	22	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:176:T:0:N:0:O:1	2,32,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	198	22	20	0.0594059405940594	0.0	A:0:C:94:G:0:T:6:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,56,6,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	10687	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	198	22	20	0.024793388429752067	0.0	A:0:C:3:G:0:T:118:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,60,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	198	22	20	0.038461538461538464	0.0	A:0:C:0:G:4:T:100:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	3,66,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	72	198	22	20	0.08333333333333333	0.0	A:0:C:0:G:65:T:6:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	6,30,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11327	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	198	22	20	0.03333333333333333	0.0	A:4:C:0:G:116:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	4,79,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11332	A	G	A	16	ignore low frequency variant	Pass	False	False	True	161	387	22	20	0.024844720496894408	0.0	A:152:C:0:G:4:T:0:N:0:O:5	A:387:C:0:G:0:T:0:N:0:O:0	4,81,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	200	22	20	0.04597701149425287	0.0	A:1:C:81:G:0:T:4:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,71,4,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11760	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	200	22	20	0.020618556701030927	0.0	A:95:C:0:G:2:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	2,68,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11839	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	200	22	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	2,68,0,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	11841	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	200	22	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:0:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	2,68,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	203	22	20	0.020618556701030927	0.0	A:0:C:0:G:95:T:2:N:0:O:0	A:0:C:0:G:203:T:0:N:0:O:0	0,42,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	195	22	20	0.019230769230769232	0.0	A:2:C:0:G:81:T:0:N:0:O:21	A:0:C:0:G:194:T:0:N:0:O:1	0,82,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	194	22	20	0.027777777777777776	0.0	A:70:C:2:G:0:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	2,52,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	194	22	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:107:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,68,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	194	22	20	0.030612244897959183	0.0	A:92:C:0:G:3:T:0:N:0:O:3	A:194:C:0:G:0:T:0:N:0:O:0	3,50,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	194	22	20	0.03488372093023256	0.0	A:3:C:0:G:79:T:0:N:0:O:4	A:0:C:0:G:194:T:0:N:0:O:0	3,38,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	195	22	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:81:N:0:O:10	A:0:C:0:G:0:T:195:N:0:O:0	0,33,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	195	22	20	0.0449438202247191	0.0	A:84:C:0:G:4:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	4,36,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	195	22	20	0.08045977011494253	0.0	A:0:C:80:G:0:T:7:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,63,7,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12832	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	192	22	20	0.023076923076923078	0.0	A:3:C:0:G:125:T:1:N:0:O:1	A:0:C:0:G:192:T:0:N:0:O:0	3,51,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	192	22	20	0.045454545454545456	0.0	A:1:C:5:G:0:T:101:N:0:O:3	A:0:C:0:G:0:T:192:N:0:O:0	0,56,5,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	192	22	20	0.043010752688172046	0.0	A:0:C:88:G:0:T:4:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	2,34,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	192	22	20	0.03125	0.0	A:4:C:0:G:116:T:0:N:0:O:8	A:0:C:0:G:192:T:0:N:0:O:0	4,46,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	192	22	20	0.018691588785046728	0.0	A:98:C:0:G:2:T:0:N:0:O:7	A:192:C:0:G:0:T:0:N:0:O:0	2,30,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	192	22	20	0.04081632653061224	0.0	A:0:C:93:G:0:T:4:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	0,51,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	200	22	20	0.026143790849673203	0.0	A:4:C:0:G:145:T:0:N:0:O:4	A:0:C:0:G:200:T:0:N:0:O:0	4,62,0,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	191	22	20	0.05084745762711865	0.0	A:0:C:54:G:0:T:3:N:0:O:2	A:0:C:191:G:0:T:0:N:0:O:0	0,51,3,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	191	22	20	0.02247191011235955	0.0	A:2:C:0:G:83:T:0:N:0:O:4	A:0:C:0:G:191:T:0:N:0:O:0	2,49,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	191	22	20	0.02631578947368421	0.0	A:2:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	2,38,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	191	22	20	0.08163265306122448	0.0	A:8:C:0:G:84:T:0:N:0:O:6	A:0:C:0:G:191:T:0:N:0:O:0	8,31,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	191	22	20	0.025974025974025976	0.0	A:0:C:75:G:0:T:2:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,49,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	13517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	191	22	20	0.024193548387096774	0.0	A:0:C:119:G:0:T:3:N:0:O:2	A:0:C:191:G:0:T:0:N:0:O:0	1,56,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	13709	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	187	22	20	0.019801980198019802	0.0	A:2:C:0:G:0:T:93:N:0:O:6	A:0:C:0:G:0:T:187:N:0:O:0	2,27,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	196	22	20	0.038461538461538464	0.0	A:4:C:1:G:99:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	4,26,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	197	22	20	0.04225352112676056	0.0	A:0:C:108:G:0:T:6:N:0:O:28	A:0:C:197:G:0:T:0:N:0:O:0	0,54,6,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	14393	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	197	22	20	0.020618556701030927	0.0	A:0:C:93:G:0:T:2:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	0,52,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	108	197	22	20	1.0	1.0	A:0:C:0:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	40,40,68,68	315.654	1288.2	yes	.	.	.	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	201	22	20	0.020689655172413793	0.0	A:0:C:126:G:0:T:3:N:0:O:16	A:0:C:201:G:0:T:0:N:0:O:0	0,104,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	14764	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	201	22	20	0.025	0.0	A:0:C:3:G:0:T:117:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	0,87,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	15413	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	199	22	20	0.025423728813559324	0.0	A:113:C:0:G:3:T:0:N:0:O:2	A:199:C:0:G:0:T:0:N:0:O:0	3,64,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	15490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	199	22	20	0.024390243902439025	0.0	A:3:C:0:G:114:T:0:N:0:O:6	A:0:C:0:G:199:T:0:N:0:O:0	3,69,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	198	22	20	0.07407407407407407	0.0	A:0:C:73:G:0:T:6:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,36,6,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	198	22	20	0.02197802197802198	0.0	A:0:C:87:G:0:T:2:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,50,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	198	22	20	0.0380952380952381	0.0	A:4:C:0:G:99:T:1:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	4,59,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	198	22	20	0.0423728813559322	0.0	A:0:C:0:G:111:T:5:N:0:O:2	A:0:C:0:G:198:T:0:N:0:O:0	5,70,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	198	22	20	0.042105263157894736	0.0	A:4:C:0:G:87:T:0:N:0:O:4	A:0:C:0:G:197:T:1:N:0:O:0	4,40,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	198	22	20	0.02	0.0	A:91:C:1:G:2:T:0:N:0:O:6	A:198:C:0:G:0:T:0:N:0:O:0	2,50,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	199	22	20	0.033707865168539325	0.0	A:0:C:0:G:3:T:84:N:0:O:2	A:0:C:3:G:0:T:196:N:0:O:0	0,37,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	199	22	20	0.022727272727272728	0.0	A:86:C:0:G:2:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,19,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	16950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	199	22	20	0.02564102564102564	0.0	A:0:C:2:G:0:T:76:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	1,29,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	198	22	20	0.023529411764705882	0.0	A:2:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	2,12,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	189	22	20	0.03418803418803419	0.0	A:4:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	4,41,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	189	22	20	0.03260869565217391	0.0	A:0:C:88:G:0:T:3:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	0,64,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	189	22	20	0.05084745762711865	0.0	A:6:C:0:G:112:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	6,46,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	189	22	20	0.020618556701030927	0.0	A:0:C:94:G:0:T:2:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	0,61,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	122	189	22	20	0.040983606557377046	0.0	A:111:C:0:G:0:T:5:N:0:O:6	A:189:C:0:G:0:T:0:N:0:O:0	0,67,5,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	17875	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	197	22	20	0.017699115044247787	0.0	A:89:C:2:G:0:T:0:N:0:O:22	A:197:C:0:G:0:T:0:N:0:O:0	1,50,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	18088	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	189	22	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	2,45,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	198	22	20	0.025157232704402517	0.0	A:0:C:153:G:0:T:4:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,86,4,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	198	22	20	0.02531645569620253	0.0	A:0:C:154:G:0:T:4:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,90,4,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	18734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	195	22	20	0.01639344262295082	0.0	A:1:C:0:G:47:T:0:N:0:O:13	A:0:C:0:G:195:T:0:N:0:O:0	1,38,0,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	18978	A	G	A	16	ignore low frequency variant	Pass	False	False	True	157	211	22	20	0.044585987261146494	0.0	A:149:C:0:G:7:T:0:N:0:O:1	A:211:C:0:G:0:T:0:N:0:O:0	7,62,0,95	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	211	22	20	0.022727272727272728	0.0	A:3:C:0:G:128:T:0:N:0:O:1	A:0:C:0:G:211:T:0:N:0:O:0	3,33,0,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	267	22	20	0.136986301369863	0.0	A:0:C:62:G:0:T:10:N:0:O:1	A:0:C:267:G:0:T:0:N:0:O:0	0,47,10,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	19563	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	199	22	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	2,20,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	19655	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	187	22	20	0.022900763358778626	0.0	A:115:C:0:G:3:T:1:N:0:O:12	A:187:C:0:G:0:T:0:N:0:O:0	2,74,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	199	22	20	0.03260869565217391	0.0	A:0:C:0:G:3:T:88:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	0,39,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	210	391	22	20	0.03333333333333333	0.0	A:7:C:0:G:202:T:0:N:0:O:1	A:0:C:0:G:391:T:0:N:0:O:0	7,87,0,123	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	20428	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	197	22	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:197:G:0:T:0:N:0:O:0	2,57,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	195	22	20	0.02142857142857143	0.0	A:3:C:0:G:136:T:1:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	2,63,1,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	151	195	22	20	0.019867549668874173	0.0	A:1:C:136:G:0:T:3:N:0:O:11	A:0:C:195:G:0:T:0:N:0:O:0	3,82,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	181	22	20	0.020689655172413793	0.0	A:3:C:0:G:130:T:0:N:0:O:12	A:0:C:0:G:180:T:0:N:0:O:1	0,32,3,113	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	186	22	20	0.1188118811881188	0.0	A:0:C:0:G:84:T:12:N:0:O:5	A:0:C:0:G:186:T:0:N:0:O:0	0,70,12,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	271	22	20	0.035398230088495575	0.0	A:0:C:109:G:0:T:4:N:0:O:0	A:0:C:271:G:0:T:0:N:0:O:0	0,69,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21231	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	271	22	20	0.03305785123966942	0.0	A:116:C:0:G:4:T:0:N:0:O:1	A:271:C:0:G:0:T:0:N:0:O:0	4,58,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	270	22	20	0.01694915254237288	0.0	A:0:C:1:G:0:T:41:N:0:O:17	A:0:C:0:G:0:T:270:N:0:O:0	0,45,1,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	189	22	20	0.05555555555555555	0.0	A:0:C:85:G:0:T:5:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,50,5,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	189	22	20	0.042105263157894736	0.0	A:90:C:0:G:1:T:4:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,26,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	189	22	20	0.02197802197802198	0.005291005291005291	A:89:C:0:G:2:T:0:N:0:O:0	A:188:C:0:G:1:T:0:N:0:O:0	2,19,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	185	22	20	0.05813953488372093	0.0	A:0:C:77:G:0:T:5:N:0:O:4	A:0:C:185:G:0:T:0:N:0:O:0	5,25,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	150	189	22	20	0.02	0.0	A:0:C:0:G:3:T:146:N:0:O:1	A:0:C:0:G:0:T:189:N:0:O:0	3,62,0,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	22488	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	130	22	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:130:C:0:G:0:T:0:N:0:O:0	2,56,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	140	200	22	20	0.9285714285714286	1.0	A:0:C:0:G:130:T:0:N:0:O:10	A:0:C:0:G:200:T:0:N:0:O:0	66,76,64,64	278.474	1659.7	yes	.	.	.	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	23426	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	200	22	20	0.03508771929824561	0.0	A:0:C:0:G:110:T:4:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	4,61,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	196	22	20	0.03260869565217391	0.0	A:3:C:0:G:82:T:0:N:0:O:7	A:0:C:0:G:196:T:0:N:0:O:0	3,20,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	23610	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	199	22	20	0.027777777777777776	0.0	A:3:C:0:G:105:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	3,48,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	199	22	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	2,45,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	186	22	20	0.16666666666666666	0.0	A:0:C:79:G:0:T:16:N:0:O:1	A:0:C:186:G:0:T:0:N:0:O:0	0,56,16,40	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	186	22	20	0.022727272727272728	0.0	A:2:C:0:G:0:T:86:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	2,15,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	186	22	20	0.02631578947368421	0.0	A:3:C:0:G:110:T:0:N:0:O:1	A:0:C:0:G:186:T:0:N:0:O:0	3,20,0,94	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	186	22	20	0.03488372093023256	0.0	A:0:C:83:G:0:T:3:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,57,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	186	22	20	0.03225806451612903	0.0	A:0:C:120:G:0:T:4:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,60,4,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24202	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	192	22	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:192:N:0:O:0	0,40,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	192	22	20	0.029850746268656716	0.0	A:0:C:64:G:0:T:2:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	0,50,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24243	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	192	22	20	0.028169014084507043	0.0	A:2:C:1:G:0:T:64:N:0:O:4	A:0:C:0:G:0:T:192:N:0:O:0	0,57,2,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	192	22	20	0.029411764705882353	0.0	A:60:C:0:G:2:T:0:N:0:O:6	A:192:C:0:G:0:T:0:N:0:O:0	0,49,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	192	22	20	0.0547945205479452	0.0	A:0:C:60:G:0:T:4:N:0:O:9	A:0:C:192:G:0:T:0:N:0:O:0	0,62,4,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	192	22	20	0.05504587155963303	0.0	A:6:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:192:T:0:N:0:O:0	6,29,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24278	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	192	22	20	0.021505376344086023	0.0	A:0:C:0:G:2:T:91:N:0:O:0	A:0:C:0:G:0:T:192:N:0:O:0	2,15,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	192	22	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:103:N:0:O:0	A:0:C:0:G:0:T:192:N:0:O:0	3,27,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	150	199	22	20	0.02666666666666667	0.0	A:4:C:142:G:0:T:0:N:0:O:4	A:0:C:199:G:0:T:0:N:0:O:0	4,86,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	199	22	20	0.020512820512820513	0.0	A:0:C:188:G:1:T:4:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	0,111,4,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	195	22	20	0.02459016393442623	0.0	A:119:C:0:G:3:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	3,90,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	70	195	22	20	0.05714285714285714	0.0	A:0:C:4:G:0:T:66:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	4,48,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	197	22	20	0.0234375	0.0	A:3:C:0:G:124:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	3,74,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	197	22	20	0.025423728813559324	0.0	A:112:C:0:G:3:T:0:N:0:O:3	A:197:C:0:G:0:T:0:N:0:O:0	3,65,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	105	197	22	20	0.02857142857142857	0.0	A:100:C:3:G:0:T:0:N:0:O:2	A:197:C:0:G:0:T:0:N:0:O:0	3,55,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	198	22	20	0.024793388429752067	0.0	A:0:C:0:G:3:T:118:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	3,43,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	198	22	20	0.03225806451612903	0.0	A:0:C:90:G:0:T:3:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,54,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	198	22	20	0.024096385542168676	0.0	A:0:C:76:G:0:T:2:N:0:O:5	A:0:C:198:G:0:T:0:N:0:O:0	0,63,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	25554	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	198	22	20	0.022727272727272728	0.0	A:1:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,39,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	103	198	22	20	0.9902912621359223	1.0	A:0:C:0:G:0:T:102:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:0	36,37,66,66	350.0	1795.8	yes	.	.	.	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	199	22	20	0.057692307692307696	0.0	A:97:C:0:G:6:T:0:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	6,37,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	199	22	20	0.02127659574468085	0.0	A:0:C:91:G:0:T:2:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	2,51,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	199	22	20	0.052083333333333336	0.0	A:5:C:0:G:90:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	5,38,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	389	22	20	0.02040816326530612	0.0	A:191:C:0:G:4:T:0:N:0:O:1	A:389:C:0:G:0:T:0:N:0:O:0	0,150,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26066	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	196	22	20	0.0234375	0.0	A:0:C:3:G:0:T:125:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,73,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	185	22	20	0.02247191011235955	0.0	A:2:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:185:T:0:N:0:O:0	2,43,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	185	22	20	0.03488372093023256	0.0	A:3:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:185:T:0:N:0:O:0	3,32,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	380	22	20	0.07575757575757576	0.0	A:0:C:182:G:0:T:15:N:0:O:1	A:0:C:380:G:0:T:0:N:0:O:0	0,158,15,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	226	382	22	20	0.03982300884955752	0.0	A:0:C:9:G:0:T:216:N:0:O:1	A:0:C:0:G:0:T:382:N:0:O:0	0,166,9,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	199	22	20	0.02608695652173913	0.0	A:111:C:0:G:3:T:0:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	3,59,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	199	22	20	0.03125	0.01507537688442211	A:0:C:3:G:0:T:93:N:0:O:0	A:0:C:3:G:0:T:196:N:0:O:0	0,36,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	199	22	20	0.05263157894736842	0.0	A:5:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	5,15,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	199	22	20	0.038834951456310676	0.0	A:0:C:98:G:0:T:4:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,79,4,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	199	22	20	0.027777777777777776	0.0	A:104:C:0:G:3:T:0:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	3,54,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	27027	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	193	22	20	0.02459016393442623	0.0	A:119:C:3:G:0:T:0:N:0:O:0	A:193:C:0:G:0:T:0:N:0:O:0	3,68,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	193	22	20	0.08888888888888889	0.0	A:0:C:81:G:0:T:8:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,68,8,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	195	22	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:107:N:0:O:0	A:1:C:0:G:0:T:194:N:0:O:0	0,49,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	195	22	20	0.02054794520547945	0.0	A:0:C:131:G:0:T:3:N:0:O:12	A:0:C:195:G:0:T:0:N:0:O:0	0,72,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	27903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	191	22	20	0.02459016393442623	0.0	A:0:C:110:G:0:T:3:N:0:O:9	A:0:C:191:G:0:T:0:N:0:O:0	0,89,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	184	22	20	0.0273972602739726	0.0	A:0:C:70:G:0:T:2:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,52,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	28320	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	184	22	20	0.0625	0.0	A:0:C:105:G:0:T:7:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,57,7,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	185	22	20	0.01904761904761905	0.0	A:2:C:93:G:0:T:1:N:0:O:9	A:0:C:184:G:0:T:0:N:0:O:1	2,64,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	195	22	20	0.02666666666666667	0.0	A:0:C:73:G:0:T:2:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,39,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	263	22	20	0.02127659574468085	0.0	A:0:C:90:G:0:T:2:N:0:O:2	A:0:C:263:G:0:T:0:N:0:O:0	0,44,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	28915	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	264	22	20	0.021052631578947368	0.0	A:1:C:91:G:0:T:2:N:0:O:1	A:3:C:261:G:0:T:0:N:0:O:0	0,14,2,81	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00006	artic-pipeline	NB04	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	264	22	20	0.030612244897959183	0.0	A:3:C:0:G:92:T:0:N:0:O:3	A:0:C:0:G:264:T:0:N:0:O:0	3,12,0,86	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	386	22	20	0.07086614173228346	0.0	A:0:C:114:G:0:T:9:N:0:O:4	A:0:C:386:G:0:T:0:N:0:O:0	0,112,9,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	202	22	20	0.02666666666666667	0.0	A:2:C:0:G:70:T:0:N:0:O:3	A:0:C:0:G:202:T:0:N:0:O:0	2,10,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	202	22	20	0.03296703296703297	0.0	A:3:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:202:T:0:N:0:O:0	3,45,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	202	22	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:96:N:0:O:1	A:0:C:0:G:0:T:202:N:0:O:0	0,62,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29195	G	C	G	16	ignore low frequency variant	Pass	False	False	True	107	202	22	20	0.018691588785046728	0.0	A:0:C:2:G:91:T:0:N:0:O:14	A:0:C:0:G:202:T:0:N:0:O:0	1,34,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	202	22	20	0.022727272727272728	0.0	A:0:C:2:G:0:T:85:N:0:O:1	A:0:C:0:G:0:T:202:N:0:O:0	0,58,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	203	22	20	0.058823529411764705	0.0	A:80:C:0:G:5:T:0:N:0:O:0	A:203:C:0:G:0:T:0:N:0:O:0	5,29,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	204	22	20	0.03676470588235294	0.0	A:5:C:0:G:129:T:0:N:0:O:2	A:0:C:0:G:204:T:0:N:0:O:0	5,54,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	204	22	20	0.023809523809523808	0.0	A:0:C:123:G:0:T:3:N:0:O:0	A:0:C:204:G:0:T:0:N:0:O:0	0,67,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	204	22	20	0.024793388429752067	0.0	A:108:C:0:G:3:T:0:N:0:O:10	A:204:C:0:G:0:T:0:N:0:O:0	3,35,0,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	204	22	20	0.04132231404958678	0.0	A:5:C:0:G:96:T:0:N:0:O:20	A:0:C:0:G:204:T:0:N:0:O:0	5,31,0,90	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	149	204	22	20	0.04697986577181208	0.0	A:142:C:7:G:0:T:0:N:0:O:0	A:204:C:0:G:0:T:0:N:0:O:0	0,69,7,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00006	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	22	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,37,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	22	.	0.039473684210526314	.	A:0:C:3:G:0:T:73:N:0:O:0	.	0,39,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	204	G	T	T	17	accept high frequency variant	Pass	False	True	True	82	.	22	.	0.9878048780487805	.	A:0:C:0:G:0:T:81:N:0:O:1	.	37,38,44,44	279.237	2896.0	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	.	22	.	0.038461538461538464	.	A:2:C:0:G:43:T:1:N:0:O:6	.	2,6,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	77	.	22	.	0.935064935064935	.	A:0:C:1:G:0:T:72:N:0:O:4	.	23,26,49,51	280.0	1567.2	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	22	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,50,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	282	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	22	.	0.025974025974025976	.	A:0:C:73:G:0:T:2:N:0:O:2	.	1,31,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	22	.	0.04142011834319527	.	A:0:C:159:G:0:T:7:N:0:O:3	.	0,121,7,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	22	.	0.024193548387096774	.	A:3:C:0:G:121:T:0:N:0:O:0	.	3,58,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	22	.	0.024390243902439025	.	A:2:C:0:G:78:T:0:N:0:O:2	.	2,57,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	499	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	22	.	0.020134228187919462	.	A:0:C:3:G:0:T:146:N:0:O:0	.	0,78,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	22	.	1.0	.	A:0:C:0:G:0:T:140:N:0:O:0	.	88,88,52,52	70.0	1328.5	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	22	.	0.021052631578947368	.	A:0:C:85:G:0:T:2:N:0:O:8	.	0,52,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	22	.	0.027777777777777776	.	A:4:C:0:G:109:T:0:N:0:O:31	.	1,68,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	22	.	0.04597701149425287	.	A:83:C:0:G:4:T:0:N:0:O:0	.	1,49,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	22	.	0.0641025641025641	.	A:5:C:0:G:73:T:0:N:0:O:0	.	5,23,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	234	.	22	.	0.02564102564102564	.	A:6:C:0:G:228:T:0:N:0:O:0	.	6,108,0,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1287	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	22	.	0.020833333333333332	.	A:4:C:0:G:184:T:0:N:0:O:4	.	0,124,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1288	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	22	.	0.034722222222222224	.	A:0:C:134:G:0:T:5:N:0:O:5	.	0,80,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	22	.	0.016129032258064516	.	A:2:C:91:G:0:T:0:N:0:O:31	.	2,53,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1742	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	22	.	0.024193548387096774	.	A:3:C:0:G:116:T:0:N:0:O:5	.	3,54,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	1884	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	22	.	0.03225806451612903	.	A:0:C:120:G:0:T:4:N:0:O:0	.	2,65,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	22	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,46,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	22	.	0.09302325581395349	.	A:8:C:0:G:77:T:0:N:0:O:1	.	8,18,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	22	.	0.022900763358778626	.	A:3:C:0:G:128:T:0:N:0:O:0	.	3,56,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	2659	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	22	.	0.023809523809523808	.	A:0:C:0:G:123:T:3:N:0:O:0	.	3,67,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	22	.	0.0380952380952381	.	A:0:C:100:G:0:T:4:N:0:O:1	.	0,92,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	2903	A	C	A	16	ignore low frequency variant	Pass	False	False	True	120	.	22	.	0.025	.	A:116:C:3:G:0:T:1:N:0:O:0	.	3,54,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	66	.	22	.	0.045454545454545456	.	A:61:C:3:G:0:T:0:N:0:O:2	.	0,21,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	22	.	0.022222222222222223	.	A:1:C:113:G:0:T:3:N:0:O:18	.	0,52,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	22	.	0.7131147540983607	.	A:0:C:0:G:0:T:87:N:0:O:35	.	46,81,41,41	58.097	1494.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	22	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,45,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.041237113402061855	.	A:93:C:0:G:4:T:0:N:0:O:0	.	0,53,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	22	.	0.031914893617021274	.	A:90:C:0:G:1:T:3:N:0:O:0	.	0,53,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	22	.	0.13978494623655913	.	A:0:C:80:G:0:T:13:N:0:O:0	.	0,60,13,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3773	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,60,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	22	.	0.043478260869565216	.	A:0:C:0:G:3:T:53:N:0:O:13	.	0,38,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	22	.	0.025	.	A:3:C:0:G:115:T:0:N:0:O:2	.	0,95,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3885	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	22	.	0.025210084033613446	.	A:0:C:114:G:0:T:3:N:0:O:2	.	3,77,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	130	.	22	.	0.038461538461538464	.	A:5:C:1:G:0:T:118:N:0:O:6	.	5,95,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	226	.	22	.	0.030973451327433628	.	A:219:C:0:G:7:T:0:N:0:O:0	.	7,107,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	277	.	22	.	0.021660649819494584	.	A:6:C:0:G:251:T:0:N:0:O:20	.	6,155,0,122	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	22	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,44,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.02197802197802198	.	A:89:C:2:G:0:T:0:N:0:O:0	.	2,36,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	22	.	0.04225352112676056	.	A:0:C:66:G:0:T:3:N:0:O:2	.	0,51,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.03296703296703297	.	A:85:C:0:G:3:T:0:N:0:O:3	.	2,39,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	240	.	22	.	0.020833333333333332	.	A:0:C:214:G:0:T:5:N:0:O:21	.	0,170,5,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	231	.	22	.	0.04329004329004329	.	A:0:C:0:G:212:T:10:N:0:O:9	.	0,155,10,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	.	22	.	0.01875	.	A:0:C:146:G:0:T:3:N:0:O:11	.	0,88,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	176	.	22	.	0.03977272727272727	.	A:169:C:0:G:7:T:0:N:0:O:0	.	7,92,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	.	22	.	0.02142857142857143	.	A:0:C:3:G:0:T:137:N:0:O:0	.	0,74,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	.	22	.	0.04065040650406504	.	A:0:C:0:G:5:T:113:N:0:O:5	.	0,56,5,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	22	.	0.03571428571428571	.	A:0:C:4:G:0:T:107:N:0:O:1	.	0,66,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	22	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	1,64,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	22	.	0.12162162162162163	.	A:0:C:65:G:0:T:9:N:0:O:0	.	0,53,9,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	22	.	0.06578947368421052	.	A:0:C:5:G:0:T:71:N:0:O:0	.	0,55,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	22	.	0.02654867256637168	.	A:3:C:0:G:107:T:0:N:0:O:3	.	3,29,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	22	.	0.037037037037037035	.	A:0:C:101:G:0:T:4:N:0:O:3	.	0,60,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	22	.	0.04580152671755725	.	A:0:C:125:G:0:T:6:N:0:O:0	.	0,68,6,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	22	.	0.12	.	A:0:C:87:G:0:T:12:N:0:O:1	.	0,64,12,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	22	.	0.02564102564102564	.	A:0:C:113:G:0:T:3:N:0:O:1	.	0,73,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	22	.	0.021897810218978103	.	A:0:C:3:G:0:T:134:N:0:O:0	.	0,71,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	22	.	0.019230769230769232	.	A:0:C:95:G:0:T:2:N:0:O:7	.	1,46,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	22	.	0.020833333333333332	.	A:2:C:0:G:91:T:0:N:0:O:3	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	22	.	0.02040816326530612	.	A:0:C:185:G:0:T:4:N:0:O:7	.	0,114,4,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	.	22	.	0.02631578947368421	.	A:0:C:179:G:0:T:5:N:0:O:6	.	0,130,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6898	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	22	.	0.026785714285714284	.	A:108:C:0:G:1:T:3:N:0:O:0	.	2,42,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	6990	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	22	.	0.022222222222222223	.	A:0:C:124:G:0:T:3:N:0:O:8	.	1,56,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	7029	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	22	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,52,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	22	.	0.0410958904109589	.	A:70:C:0:G:0:T:3:N:0:O:0	.	0,51,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	22	.	0.0379746835443038	.	A:0:C:74:G:0:T:3:N:0:O:2	.	0,57,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	22	.	0.06896551724137931	.	A:6:C:0:G:79:T:0:N:0:O:2	.	6,17,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	22	.	0.024793388429752067	.	A:0:C:117:G:0:T:3:N:0:O:1	.	0,61,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	22	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,62,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	8130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	22	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,42,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	22	.	0.024390243902439025	.	A:80:C:0:G:2:T:0:N:0:O:0	.	2,39,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	22	.	0.028037383177570093	.	A:3:C:0:G:101:T:0:N:0:O:3	.	3,42,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	8676	G	T	T	17	accept high frequency variant	Pass	False	True	True	119	.	22	.	1.0	.	A:0:C:0:G:0:T:119:N:0:O:0	.	55,55,64,64	279.237	1811.5	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	22	.	0.02654867256637168	.	A:0:C:109:G:0:T:3:N:0:O:1	.	0,75,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	8887	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	.	22	.	0.03225806451612903	.	A:57:C:0:G:0:T:2:N:0:O:3	.	2,10,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	22	.	0.03571428571428571	.	A:0:C:53:G:0:T:2:N:0:O:1	.	2,4,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	22	.	0.11864406779661017	.	A:7:C:0:G:49:T:0:N:0:O:3	.	7,8,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	22	.	0.029411764705882353	.	A:0:C:99:G:0:T:3:N:0:O:0	.	0,78,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	22	.	0.038461538461538464	.	A:0:C:0:G:125:T:5:N:0:O:0	.	0,75,5,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	22	.	0.023668639053254437	.	A:0:C:163:G:0:T:4:N:0:O:2	.	0,147,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	.	22	.	0.03333333333333333	.	A:0:C:174:G:0:T:6:N:0:O:0	.	0,152,6,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	9886	C	A	C	16	ignore low frequency variant	Pass	False	False	True	86	.	22	.	0.023255813953488372	.	A:2:C:82:G:0:T:0:N:0:O:2	.	0,30,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	22	.	0.08196721311475409	.	A:5:C:0:G:54:T:1:N:0:O:1	.	5,26,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	22	.	0.031578947368421054	.	A:0:C:80:G:0:T:3:N:0:O:12	.	3,43,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	10139	G	A	G	16	ignore low frequency variant	Pass	False	False	True	231	.	22	.	0.021645021645021644	.	A:5:C:0:G:226:T:0:N:0:O:0	.	5,108,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	22	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,26,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	22	.	0.02727272727272727	.	A:0:C:105:G:0:T:3:N:0:O:2	.	0,71,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	.	22	.	0.044642857142857144	.	A:0:C:0:G:5:T:104:N:0:O:3	.	0,72,5,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11075	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	22	.	0.027777777777777776	.	A:0:C:1:G:0:T:34:N:0:O:1	.	1,24,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11076	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	22	.	0.027777777777777776	.	A:0:C:1:G:0:T:34:N:0:O:1	.	1,24,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	22	.	0.02127659574468085	.	A:0:C:0:G:2:T:92:N:0:O:0	.	1,68,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	22	.	0.022222222222222223	.	A:0:C:0:G:2:T:87:N:0:O:1	.	0,63,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	61	.	22	.	0.06557377049180328	.	A:0:C:0:G:57:T:4:N:0:O:0	.	4,33,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	22	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	2,50,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11495	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	22	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	1,60,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	22	.	0.044444444444444446	.	A:0:C:0:G:86:T:4:N:0:O:0	.	4,48,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11733	T	A	T	16	ignore low frequency variant	Pass	False	False	True	64	.	22	.	0.03125	.	A:2:C:0:G:0:T:60:N:0:O:2	.	2,23,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	22	.	0.024691358024691357	.	A:77:C:0:G:0:T:2:N:0:O:2	.	2,43,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	22	.	0.04838709677419355	.	A:59:C:0:G:3:T:0:N:0:O:0	.	1,49,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	22	.	0.02247191011235955	.	A:0:C:0:G:87:T:2:N:0:O:0	.	0,57,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	22	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	2,62,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12242	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,60,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	22	.	0.028846153846153848	.	A:3:C:0:G:78:T:0:N:0:O:23	.	0,72,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	194	.	22	.	0.02577319587628866	.	A:0:C:0:G:5:T:188:N:0:O:1	.	0,89,5,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12453	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	22	.	0.022099447513812154	.	A:0:C:175:G:0:T:4:N:0:O:2	.	0,82,4,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.020618556701030927	.	A:0:C:2:G:0:T:93:N:0:O:2	.	0,36,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	22	.	0.13924050632911392	.	A:0:C:67:G:0:T:11:N:0:O:1	.	0,31,11,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	22	.	0.02702702702702703	.	A:0:C:105:G:0:T:3:N:0:O:3	.	0,32,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	22	.	0.02830188679245283	.	A:3:C:0:G:100:T:0:N:0:O:3	.	3,27,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	22	.	0.02857142857142857	.	A:102:C:0:G:3:T:0:N:0:O:0	.	3,27,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,54,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13378	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	.	22	.	0.05434782608695652	.	A:0:C:173:G:0:T:10:N:0:O:1	.	0,124,10,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	.	22	.	0.034482758620689655	.	A:2:C:0:G:56:T:0:N:0:O:0	.	1,21,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	22	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,51,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	22	.	0.125	.	A:0:C:42:G:0:T:6:N:0:O:0	.	0,40,6,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13482	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	22	.	0.041666666666666664	.	A:69:C:0:G:3:T:0:N:0:O:0	.	0,36,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	22	.	0.0273972602739726	.	A:69:C:0:G:2:T:1:N:0:O:1	.	0,38,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	22	.	0.05952380952380952	.	A:5:C:0:G:75:T:0:N:0:O:4	.	5,18,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	22	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	1,43,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13577	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	22	.	0.021052631578947368	.	A:0:C:90:G:0:T:2:N:0:O:3	.	1,48,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	22	.	0.020833333333333332	.	A:0:C:91:G:0:T:2:N:0:O:3	.	0,47,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	134	.	22	.	0.03731343283582089	.	A:5:C:0:G:0:T:100:N:0:O:29	.	2,54,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13643	C	T	C	16	ignore low frequency variant	Pass	False	False	True	199	.	22	.	0.02512562814070352	.	A:0:C:185:G:0:T:5:N:0:O:9	.	0,62,5,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13644	T	C	T	16	ignore low frequency variant	Pass	False	False	True	215	.	22	.	0.03255813953488372	.	A:0:C:7:G:0:T:206:N:0:O:2	.	0,59,7,156	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13808	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	22	.	0.025423728813559324	.	A:0:C:114:G:0:T:3:N:0:O:1	.	0,13,3,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	22	.	0.021505376344086023	.	A:0:C:2:G:0:T:86:N:0:O:5	.	0,18,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13857	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.020618556701030927	.	A:0:C:0:G:2:T:95:N:0:O:0	.	0,15,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	13920	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	22	.	0.021739130434782608	.	A:3:C:1:G:134:T:0:N:0:O:0	.	0,17,3,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	22	.	0.02586206896551724	.	A:112:C:0:G:3:T:0:N:0:O:1	.	3,55,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	22	.	0.030303030303030304	.	A:0:C:111:G:0:T:4:N:0:O:17	.	0,67,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	22	.	0.019417475728155338	.	A:0:C:98:G:0:T:2:N:0:O:3	.	0,66,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	14394	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	22	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	1,55,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	104	.	22	.	1.0	.	A:0:C:0:G:0:T:104:N:0:O:0	.	46,46,58,58	265.921	1295.3	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	22	.	0.03636363636363636	.	A:4:C:0:G:106:T:0:N:0:O:0	.	4,36,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	22	.	0.028037383177570093	.	A:3:C:0:G:104:T:0:N:0:O:0	.	3,48,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15076	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	22	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,58,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	22	.	0.04081632653061224	.	A:4:C:0:G:93:T:0:N:0:O:1	.	4,27,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	22	.	0.05263157894736842	.	A:0:C:4:G:0:T:72:N:0:O:0	.	0,62,4,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	22	.	0.022857142857142857	.	A:0:C:163:G:0:T:4:N:0:O:8	.	0,141,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	15422	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.02197802197802198	.	A:89:C:0:G:0:T:2:N:0:O:0	.	0,47,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	0,54,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15784	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	22	.	0.020134228187919462	.	A:0:C:3:G:0:T:145:N:0:O:1	.	0,91,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	55	.	22	.	0.01818181818181818	.	A:1:C:0:G:0:T:43:N:0:O:11	.	0,25,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	22	.	0.1111111111111111	.	A:0:C:54:G:0:T:7:N:0:O:2	.	0,23,7,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	16001	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	22	.	0.03	.	A:0:C:3:G:0:T:92:N:0:O:5	.	3,10,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	22	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	1,27,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	22	.	0.061224489795918366	.	A:0:C:92:G:0:T:6:N:0:O:0	.	0,38,6,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	22	.	0.0410958904109589	.	A:0:C:70:G:0:T:3:N:0:O:0	.	0,39,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	22	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,38,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	22	.	0.028846153846153848	.	A:0:C:0:G:100:T:3:N:0:O:1	.	1,44,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	22	.	0.04807692307692308	.	A:5:C:0:G:96:T:0:N:0:O:3	.	5,36,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	22	.	0.04938271604938271	.	A:0:C:0:G:4:T:75:N:0:O:2	.	0,24,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16837	G	T	G	16	ignore low frequency variant	Pass	False	False	True	168	.	22	.	0.023809523809523808	.	A:2:C:0:G:127:T:4:N:0:O:35	.	0,36,4,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.054945054945054944	.	A:86:C:0:G:5:T:0:N:0:O:0	.	0,15,5,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	22	.	0.0297029702970297	.	A:0:C:97:G:0:T:3:N:0:O:1	.	0,21,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	.	22	.	0.020833333333333332	.	A:0:C:188:G:0:T:4:N:0:O:0	.	0,84,4,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	22	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	2,20,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	86	.	22	.	0.023255813953488372	.	A:2:C:0:G:0:T:82:N:0:O:2	.	2,21,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	22	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	22	.	0.020833333333333332	.	A:3:C:0:G:141:T:0:N:0:O:0	.	2,47,1,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	22	.	0.04504504504504504	.	A:0:C:106:G:0:T:5:N:0:O:0	.	0,63,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	22	.	0.044444444444444446	.	A:0:C:127:G:0:T:6:N:0:O:2	.	0,56,6,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	263	.	22	.	0.022813688212927757	.	A:0:C:244:G:0:T:6:N:0:O:13	.	0,127,6,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	22	.	0.029850746268656716	.	A:0:C:64:G:0:T:2:N:0:O:1	.	0,37,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	22	.	0.02127659574468085	.	A:84:C:0:G:0:T:2:N:0:O:8	.	0,35,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	22	.	0.04040404040404041	.	A:4:C:0:G:95:T:0:N:0:O:0	.	0,49,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	242	.	22	.	0.02066115702479339	.	A:5:C:0:G:237:T:0:N:0:O:0	.	5,89,0,153	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18080	T	C	T	16	ignore low frequency variant	Pass	False	False	True	150	.	22	.	0.02	.	A:0:C:3:G:0:T:145:N:0:O:2	.	0,73,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	22	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	0,42,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18267	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.03296703296703297	.	A:0:C:86:G:0:T:3:N:0:O:2	.	0,35,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	161	.	22	.	0.024844720496894408	.	A:0:C:155:G:0:T:4:N:0:O:2	.	0,74,4,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	134	.	22	.	0.04477611940298507	.	A:0:C:0:G:6:T:128:N:0:O:0	.	3,34,3,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	.	22	.	0.025477707006369428	.	A:0:C:152:G:0:T:4:N:0:O:1	.	0,77,4,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	22	.	0.0379746835443038	.	A:3:C:0:G:75:T:0:N:0:O:1	.	3,26,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	22	.	0.02857142857142857	.	A:4:C:0:G:133:T:0:N:0:O:3	.	4,40,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	22	.	0.08974358974358974	.	A:0:C:71:G:0:T:7:N:0:O:0	.	0,41,7,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	.	22	.	0.024390243902439025	.	A:0:C:0:G:2:T:80:N:0:O:0	.	0,46,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	22	.	0.03636363636363636	.	A:0:C:106:G:0:T:4:N:0:O:0	.	0,69,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	22	.	0.020833333333333332	.	A:4:C:0:G:186:T:0:N:0:O:2	.	4,91,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.04395604395604396	.	A:4:C:0:G:86:T:0:N:0:O:1	.	4,45,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	22	.	0.034782608695652174	.	A:0:C:100:G:0:T:4:N:0:O:11	.	4,64,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	20923	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	22	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,47,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21092	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	22	.	0.02727272727272727	.	A:0:C:106:G:0:T:3:N:0:O:1	.	0,46,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	22	.	0.11206896551724138	.	A:0:C:0:G:84:T:13:N:0:O:19	.	0,74,13,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	22	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,51,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	70	.	22	.	0.04285714285714286	.	A:3:C:0:G:0:T:37:N:0:O:30	.	2,49,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	22	.	0.028368794326241134	.	A:0:C:122:G:0:T:4:N:0:O:15	.	0,84,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	22	.	0.060240963855421686	.	A:0:C:77:G:0:T:5:N:0:O:1	.	0,34,5,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	22	.	0.023622047244094488	.	A:3:C:0:G:122:T:0:N:0:O:2	.	3,31,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21636	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	22	.	0.029411764705882353	.	A:0:C:66:G:0:T:2:N:0:O:0	.	0,34,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	22	.	0.05	.	A:0:C:72:G:0:T:4:N:0:O:4	.	2,22,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	21898	G	C	G	16	ignore low frequency variant	Pass	False	False	True	100	.	22	.	0.02	.	A:1:C:2:G:93:T:0:N:0:O:4	.	2,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	172	.	22	.	0.023255813953488372	.	A:4:C:0:G:168:T:0:N:0:O:0	.	4,100,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	22488	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	22	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	1,56,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	22	.	0.03870967741935484	.	A:6:C:0:G:149:T:0:N:0:O:0	.	6,41,0,114	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	23249	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	.	22	.	0.0234375	.	A:3:C:124:G:0:T:0:N:0:O:1	.	2,61,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	23376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	22	.	0.034482758620689655	.	A:0:C:111:G:0:T:4:N:0:O:1	.	0,71,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	133	.	22	.	0.8872180451127819	.	A:0:C:0:G:118:T:0:N:0:O:15	.	60,75,58,58	70.0	1634.6	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	23808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	22	.	0.03418803418803419	.	A:4:C:0:G:113:T:0:N:0:O:0	.	4,72,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	22	.	0.14285714285714285	.	A:0:C:114:G:0:T:19:N:0:O:0	.	0,96,19,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	.	22	.	0.02702702702702703	.	A:3:C:0:G:0:T:108:N:0:O:0	.	3,41,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	22	.	0.05172413793103448	.	A:0:C:109:G:0:T:6:N:0:O:1	.	0,91,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	22	.	0.01694915254237288	.	A:0:C:49:G:0:T:1:N:0:O:9	.	0,56,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	22	.	0.04504504504504504	.	A:5:C:0:G:104:T:0:N:0:O:2	.	5,28,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	22	.	0.029411764705882353	.	A:3:C:0:G:97:T:0:N:0:O:2	.	3,15,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	152	.	22	.	0.02631578947368421	.	A:4:C:144:G:0:T:2:N:0:O:2	.	4,78,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	204	.	22	.	0.0196078431372549	.	A:187:C:1:G:0:T:4:N:0:O:12	.	4,129,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	22	.	0.02040816326530612	.	A:3:C:0:G:116:T:0:N:0:O:28	.	3,92,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	22	.	0.03389830508474576	.	A:111:C:0:G:4:T:0:N:0:O:3	.	4,64,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	72	.	22	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	2,41,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	25053	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	22	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,49,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25061	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	22	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	1,23,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25358	A	C	A	16	ignore low frequency variant	Pass	False	False	True	134	.	22	.	0.029850746268656716	.	A:130:C:4:G:0:T:0:N:0:O:0	.	4,56,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	.	22	.	0.0273972602739726	.	A:0:C:0:G:2:T:70:N:0:O:1	.	2,20,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	116	.	22	.	0.9913793103448276	.	A:0:C:0:G:1:T:115:N:0:O:0	.	40,40,75,76	210.0	1930.6	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	22	.	0.021052631578947368	.	A:2:C:0:G:87:T:0:N:0:O:6	.	2,40,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25768	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	22	.	0.023809523809523808	.	A:79:C:0:G:2:T:0:N:0:O:3	.	2,25,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	22	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	3,24,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	118	.	22	.	0.025423728813559324	.	A:3:C:90:G:0:T:0:N:0:O:25	.	3,58,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	22	.	0.024390243902439025	.	A:80:C:2:G:0:T:0:N:0:O:0	.	1,39,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	22	.	0.031914893617021274	.	A:89:C:0:G:0:T:3:N:0:O:2	.	0,73,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	22	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	0,55,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	22	.	0.03225806451612903	.	A:3:C:0:G:0:T:90:N:0:O:0	.	3,49,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	22	.	0.030303030303030304	.	A:95:C:0:G:3:T:0:N:0:O:1	.	3,42,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	22	.	0.06818181818181818	.	A:82:C:0:G:6:T:0:N:0:O:0	.	6,35,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	22	.	0.037037037037037035	.	A:0:C:77:G:0:T:3:N:0:O:1	.	3,53,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	22	.	0.025974025974025976	.	A:75:C:2:G:0:T:0:N:0:O:0	.	2,20,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	22	.	0.04807692307692308	.	A:5:C:0:G:99:T:0:N:0:O:0	.	5,48,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	210	.	22	.	0.03333333333333333	.	A:203:C:0:G:7:T:0:N:0:O:0	.	0,152,7,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	22	.	0.02158273381294964	.	A:0:C:3:G:0:T:131:N:0:O:5	.	0,67,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26132	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	22	.	0.034482758620689655	.	A:82:C:3:G:1:T:0:N:0:O:1	.	2,62,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	22	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	2,47,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	22	.	0.024096385542168676	.	A:2:C:0:G:77:T:0:N:0:O:4	.	2,50,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	22	.	0.10294117647058823	.	A:7:C:0:G:61:T:0:N:0:O:0	.	7,36,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	188	.	22	.	0.0425531914893617	.	A:0:C:180:G:0:T:8:N:0:O:0	.	0,156,8,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	22	.	0.08421052631578947	.	A:8:C:0:G:86:T:0:N:0:O:1	.	8,12,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	22	.	0.03529411764705882	.	A:0:C:82:G:0:T:3:N:0:O:0	.	0,56,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	26873	C	T	C	16	ignore low frequency variant	Pass	False	False	True	270	.	22	.	0.06666666666666667	.	A:0:C:252:G:0:T:18:N:0:O:0	.	10,137,8,133	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	3,43,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	22	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	0,71,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	22	.	0.03	.	A:95:C:0:G:3:T:0:N:0:O:2	.	3,55,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	28270	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	.	22	.	0.020833333333333332	.	A:3:C:0:G:0:T:121:N:0:O:20	.	2,68,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	22	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,18,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	22	.	0.022727272727272728	.	A:0:C:83:G:0:T:2:N:0:O:3	.	0,21,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	22	.	0.0423728813559322	.	A:5:C:0:G:113:T:0:N:0:O:0	.	5,6,0,112	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	28927	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	22	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	0,17,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	22	.	0.017857142857142856	.	A:0:C:97:G:0:T:2:N:0:O:13	.	0,21,2,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.08791208791208792	.	A:0:C:80:G:0:T:8:N:0:O:3	.	0,75,8,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29023	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	22	.	0.03260869565217391	.	A:0:C:0:G:3:T:89:N:0:O:0	.	0,67,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29024	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	22	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	0,66,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	22	.	0.02830188679245283	.	A:3:C:97:G:0:T:0:N:0:O:6	.	3,53,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29123	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	22	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,27,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29132	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	22	.	0.02247191011235955	.	A:0:C:0:G:87:T:2:N:0:O:0	.	0,43,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	22	.	0.028985507246376812	.	A:65:C:0:G:2:T:0:N:0:O:2	.	2,23,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29418	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	22	.	0.025	.	A:0:C:2:G:0:T:77:N:0:O:1	.	0,41,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	211	.	22	.	0.02843601895734597	.	A:205:C:0:G:6:T:0:N:0:O:0	.	6,86,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	22	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,63,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	29746	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	22	.	0.02247191011235955	.	A:81:C:0:G:2:T:0:N:0:O:6	.	2,27,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00007	artic-pipeline	NB05	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	153	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	153	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	16816	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	16817	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00007	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	145	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	188	22	20	0.022222222222222223	0.0	A:0:C:44:G:0:T:1:N:0:O:0	A:0:C:188:G:0:T:0:N:0:O:0	0,23,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	193	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	190	22	20	0.02040816326530612	0.0	A:0:C:47:G:0:T:1:N:0:O:1	A:0:C:190:G:0:T:0:N:0:O:0	0,25,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	51	188	22	20	0.9607843137254902	1.0	A:0:C:0:G:0:T:49:N:0:O:2	A:0:C:0:G:0:T:188:N:0:O:0	16,18,33,33	69.237	1524.5	yes	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	187	22	20	0.02	0.0	A:1:C:0:G:0:T:43:N:0:O:6	A:0:C:0:G:0:T:187:N:0:O:0	1,16,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	188	22	20	0.024390243902439025	0.0	A:0:C:39:G:0:T:1:N:0:O:1	A:0:C:188:G:0:T:0:N:0:O:0	1,4,0,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	360	22	20	0.0472972972972973	0.0	A:0:C:139:G:1:T:7:N:0:O:1	A:0:C:360:G:0:T:0:N:0:O:0	0,93,7,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	192	22	20	0.9928571428571429	1.0	A:0:C:0:G:0:T:139:N:0:O:1	A:0:C:0:G:0:T:192:N:0:O:0	79,80,60,60	69.237	1399.2	yes	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	138	192	22	20	0.028985507246376812	0.0	A:4:C:130:G:0:T:0:N:0:O:4	A:0:C:192:G:0:T:0:N:0:O:0	4,75,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	192	22	20	0.06060606060606061	0.0	A:0:C:87:G:0:T:6:N:0:O:6	A:0:C:192:G:0:T:0:N:0:O:0	0,46,6,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	192	22	20	0.03333333333333333	0.0	A:2:C:0:G:57:T:0:N:0:O:1	A:0:C:0:G:192:T:0:N:0:O:0	2,7,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	192	22	20	0.023255813953488372	0.0	A:2:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:192:T:0:N:0:O:0	2,29,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1349	C	A	C	16	ignore low frequency variant	Pass	False	False	True	151	197	22	20	0.026490066225165563	0.0	A:4:C:132:G:0:T:0:N:0:O:15	A:0:C:197:G:0:T:0:N:0:O:0	0,56,4,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	272	22	20	0.03571428571428571	0.0	A:0:C:104:G:0:T:4:N:0:O:4	A:0:C:272:G:0:T:0:N:0:O:0	0,59,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	186	22	20	0.02702702702702703	0.0	A:71:C:2:G:0:T:0:N:0:O:1	A:186:C:0:G:0:T:0:N:0:O:0	0,49,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	187	22	20	0.0392156862745098	0.0	A:0:C:4:G:0:T:95:N:0:O:3	A:0:C:0:G:0:T:187:N:0:O:0	0,58,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	156	187	22	20	0.019230769230769232	0.0	A:3:C:0:G:135:T:0:N:0:O:18	A:0:C:0:G:186:T:1:N:0:O:0	3,69,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	187	22	20	0.09917355371900827	0.0053475935828877	A:12:C:0:G:108:T:0:N:0:O:1	A:1:C:0:G:186:T:0:N:0:O:0	12,28,0,93	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	2236	T	G	T	16	ignore low frequency variant	Pass	False	False	True	233	373	22	20	0.02145922746781116	0.0	A:0:C:0:G:5:T:225:N:0:O:3	A:0:C:0:G:0:T:373:N:0:O:0	0,141,5,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2335	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	192	22	20	0.022727272727272728	0.0	A:0:C:0:G:3:T:125:N:0:O:4	A:0:C:0:G:0:T:192:N:0:O:0	0,76,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	192	22	20	0.04918032786885246	0.0	A:116:C:6:G:0:T:0:N:0:O:0	A:192:C:0:G:0:T:0:N:0:O:0	4,59,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	192	22	20	0.04807692307692308	0.0	A:5:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:192:T:0:N:0:O:0	2,55,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	192	22	20	0.02	0.0	A:96:C:2:G:0:T:0:N:0:O:2	A:192:C:0:G:0:T:0:N:0:O:0	2,40,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	189	22	20	0.02962962962962963	0.0	A:4:C:0:G:130:T:0:N:0:O:1	A:0:C:0:G:189:T:0:N:0:O:0	4,64,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	189	22	20	0.031746031746031744	0.0	A:118:C:0:G:4:T:0:N:0:O:4	A:189:C:0:G:0:T:0:N:0:O:0	4,56,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	189	22	20	0.02830188679245283	0.0	A:0:C:102:G:0:T:3:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	0,91,3,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	2904	T	C	T	16	ignore low frequency variant	Pass	False	False	True	158	187	22	20	0.0189873417721519	0.0	A:0:C:3:G:0:T:117:N:0:O:38	A:0:C:0:G:0:T:187:N:0:O:0	3,38,0,120	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	123	187	22	20	0.7398373983739838	0.9946524064171123	A:0:C:0:G:0:T:91:N:0:O:32	A:0:C:1:G:0:T:186:N:0:O:0	38,70,53,53	63.216	1342.8	yes	.	.	.	mixed position	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	99	187	22	20	0.04040404040404041	0.0	A:0:C:0:G:82:T:4:N:0:O:13	A:0:C:0:G:187:T:0:N:0:O:0	0,56,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	190	22	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	0,52,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	190	22	20	0.03	0.0	A:0:C:91:G:0:T:3:N:0:O:6	A:0:C:190:G:0:T:0:N:0:O:0	0,50,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	190	22	20	0.031746031746031744	0.0	A:61:C:0:G:2:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	0,22,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	190	22	20	0.03	0.0	A:3:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:190:T:0:N:0:O:0	3,26,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	186	22	20	0.04716981132075472	0.0	A:0:C:100:G:0:T:5:N:0:O:1	A:0:C:186:G:0:T:0:N:0:O:0	0,78,5,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	196	22	20	0.022727272727272728	0.0	A:0:C:0:G:2:T:66:N:0:O:20	A:0:C:0:G:0:T:196:N:0:O:0	2,44,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	196	22	20	0.06	0.0	A:6:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:196:T:0:N:0:O:0	2,70,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	196	22	20	0.03571428571428571	0.0	A:0:C:81:G:0:T:3:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,69,3,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	196	22	20	0.020833333333333332	0.0	A:0:C:94:G:0:T:2:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,69,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	196	22	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:196:T:0:N:0:O:0	1,33,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	288	386	22	20	0.020833333333333332	0.0	A:6:C:0:G:274:T:0:N:0:O:8	A:0:C:0:G:384:T:1:N:0:O:1	6,123,0,165	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	4255	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	189	22	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:189:T:0:N:0:O:0	1,25,1,76	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	189	22	20	0.023622047244094488	0.0	A:3:C:0:G:0:T:96:N:0:O:28	A:0:C:1:G:0:T:188:N:0:O:0	0,57,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	197	22	20	0.022058823529411766	0.0	A:0:C:0:G:133:T:3:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	3,78,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	5300	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	186	22	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	2,42,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	191	22	20	0.1095890410958904	0.0	A:0:C:64:G:0:T:8:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,56,8,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	191	22	20	0.04285714285714286	0.0	A:0:C:3:G:0:T:66:N:0:O:1	A:0:C:0:G:0:T:191:N:0:O:0	1,54,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	191	22	20	0.020833333333333332	0.0	A:3:C:0:G:119:T:0:N:0:O:22	A:0:C:0:G:191:T:0:N:0:O:0	2,51,1,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	191	22	20	0.02654867256637168	0.0	A:109:C:0:G:3:T:0:N:0:O:1	A:191:C:0:G:0:T:0:N:0:O:0	2,61,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	194	22	20	0.025	0.0	A:3:C:0:G:111:T:0:N:0:O:6	A:0:C:0:G:194:T:0:N:0:O:0	3,42,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	194	22	20	0.06097560975609756	0.0	A:0:C:77:G:0:T:5:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,58,5,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	155	22	20	0.041666666666666664	0.0064516129032258064	A:0:C:90:G:0:T:4:N:0:O:2	A:0:C:154:G:0:T:1:N:0:O:0	0,53,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	6549	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	198	22	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:97:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:0	2,55,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	244	22	20	0.058823529411764705	0.004098360655737705	A:5:C:0:G:77:T:0:N:0:O:3	A:1:C:0:G:243:T:0:N:0:O:0	5,39,0,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	344	22	20	0.022222222222222223	0.0	A:0:C:175:G:0:T:4:N:0:O:1	A:1:C:343:G:0:T:0:N:0:O:0	0,128,4,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	6850	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	199	22	20	0.02830188679245283	0.0	A:3:C:0:G:101:T:0:N:0:O:2	A:0:C:0:G:199:T:0:N:0:O:0	2,44,1,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	199	22	20	0.036585365853658534	0.0	A:78:C:0:G:0:T:3:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	0,53,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	184	22	20	0.12121212121212122	0.0	A:8:C:1:G:57:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	8,17,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	184	22	20	0.07446808510638298	0.0	A:0:C:87:G:0:T:7:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	7,44,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	185	22	20	0.01639344262295082	0.0	A:0:C:98:G:0:T:2:N:0:O:22	A:0:C:184:G:0:T:0:N:0:O:1	0,97,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	194	22	20	0.02666666666666667	0.0	A:0:C:72:G:0:T:2:N:0:O:1	A:1:C:193:G:0:T:0:N:0:O:0	1,54,1,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	194	22	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:93:N:0:O:2	A:0:C:0:G:0:T:194:N:0:O:0	0,51,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	194	22	20	0.02654867256637168	0.0	A:110:C:3:G:0:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	3,46,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	194	22	20	0.04424778761061947	0.0	A:108:C:0:G:5:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	5,40,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	194	22	20	0.02702702702702703	0.0	A:0:C:3:G:0:T:107:N:0:O:1	A:0:C:0:G:0:T:194:N:0:O:0	0,69,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	186	22	20	0.02608695652173913	0.0	A:0:C:3:G:0:T:112:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	0,69,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	196	22	20	0.03260869565217391	0.0	A:89:C:0:G:3:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	3,47,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	197	22	20	0.025	0.0	A:3:C:0:G:117:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	3,56,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	197	22	20	0.040983606557377046	0.0	A:0:C:5:G:0:T:117:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,79,5,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	8851	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	180	22	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:179:T:1:N:0:O:0	1,52,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	180	22	20	0.05970149253731343	0.0	A:4:C:0:G:60:T:0:N:0:O:3	A:0:C:0:G:180:T:0:N:0:O:0	4,7,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	198	22	20	0.03816793893129771	0.0	A:0:C:0:G:124:T:5:N:0:O:2	A:1:C:0:G:197:T:0:N:0:O:0	0,75,5,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	262	384	22	20	0.030534351145038167	0.0	A:0:C:253:G:0:T:8:N:0:O:1	A:1:C:383:G:0:T:0:N:0:O:0	0,149,8,113	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	384	22	20	0.027624309392265192	0.0	A:0:C:169:G:0:T:5:N:0:O:7	A:0:C:384:G:0:T:0:N:0:O:0	0,150,5,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	187	22	20	0.01639344262295082	0.0	A:0:C:121:G:0:T:3:N:0:O:59	A:0:C:186:G:0:T:0:N:0:O:1	3,120,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	185	22	20	0.041666666666666664	0.0	A:0:C:3:G:0:T:69:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	3,57,0,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	190	22	20	0.0273972602739726	0.0	A:2:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	2,18,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	190	22	20	0.021052631578947368	0.0	A:0:C:85:G:1:T:2:N:0:O:7	A:0:C:190:G:0:T:0:N:0:O:0	2,32,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	10202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	157	22	20	0.025974025974025976	0.006369426751592357	A:0:C:67:G:0:T:2:N:0:O:8	A:0:C:156:G:0:T:1:N:0:O:0	1,54,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	157	22	20	0.036585365853658534	0.0	A:3:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	2,23,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	188	22	20	0.03361344537815126	0.0	A:115:C:0:G:4:T:0:N:0:O:0	A:188:C:0:G:0:T:0:N:0:O:0	4,32,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	193	22	20	0.0297029702970297	0.0	A:0:C:98:G:0:T:3:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,63,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	10916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	193	22	20	0.02608695652173913	0.0	A:3:C:0:G:110:T:0:N:0:O:2	A:0:C:0:G:193:T:0:N:0:O:0	3,42,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	194	22	20	0.037037037037037035	0.0	A:5:C:119:G:0:T:0:N:0:O:11	A:0:C:194:G:0:T:0:N:0:O:0	5,59,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	11053	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	183	22	20	0.024390243902439025	0.0	A:3:C:0:G:116:T:0:N:0:O:4	A:0:C:0:G:183:T:0:N:0:O:0	3,85,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	183	22	20	0.02127659574468085	0.0	A:0:C:0:G:2:T:92:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	2,64,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	72	183	22	20	0.041666666666666664	0.0	A:0:C:0:G:67:T:3:N:0:O:2	A:0:C:0:G:183:T:0:N:0:O:0	3,36,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	11248	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	183	22	20	0.023622047244094488	0.0	A:3:C:0:G:124:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	3,91,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	11445	T	A	T	16	ignore low frequency variant	Pass	False	False	True	122	180	22	20	0.02459016393442623	0.0	A:3:C:0:G:0:T:118:N:0:O:1	A:0:C:0:G:0:T:180:N:0:O:0	0,90,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	186	22	20	0.02040816326530612	0.0	A:48:C:0:G:1:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	0,36,1,13	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	12070	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	186	22	20	0.021739130434782608	0.0	A:0:C:0:G:89:T:2:N:0:O:1	A:0:C:0:G:186:T:0:N:0:O:0	0,48,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	183	22	20	0.024390243902439025	0.0	A:2:C:0:G:64:T:0:N:0:O:16	A:0:C:0:G:183:T:0:N:0:O:0	2,65,0,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	183	22	20	0.024691358024691357	0.01639344262295082	A:79:C:0:G:2:T:0:N:0:O:0	A:180:C:0:G:3:T:0:N:0:O:0	2,47,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	200	361	22	20	0.025	0.0	A:0:C:0:G:5:T:194:N:0:O:1	A:0:C:0:G:0:T:361:N:0:O:0	0,108,5,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	199	363	22	20	0.020100502512562814	0.0	A:4:C:0:G:194:T:0:N:0:O:1	A:0:C:0:G:363:T:0:N:0:O:0	3,69,1,130	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	181	22	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:90:N:0:O:9	A:0:C:0:G:0:T:181:N:0:O:0	0,26,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12600	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	181	22	20	0.041666666666666664	0.0	A:5:C:0:G:114:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	5,39,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	181	22	20	0.13829787234042554	0.0	A:0:C:79:G:0:T:13:N:0:O:2	A:0:C:181:G:0:T:0:N:0:O:0	0,49,13,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	190	22	20	0.019801980198019802	0.0	A:98:C:0:G:2:T:0:N:0:O:1	A:190:C:0:G:0:T:0:N:0:O:0	2,34,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	190	22	20	0.02727272727272727	0.0	A:104:C:0:G:3:T:0:N:0:O:3	A:190:C:0:G:0:T:0:N:0:O:0	3,26,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	171	22	20	0.03355704697986577	0.0	A:0:C:131:G:0:T:5:N:0:O:13	A:1:C:169:G:0:T:0:N:0:O:1	0,81,5,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	170	22	20	0.03296703296703297	0.0	A:6:C:0:G:171:T:0:N:0:O:5	A:0:C:0:G:169:T:1:N:0:O:0	6,64,0,118	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	161	170	22	20	0.018633540372670808	0.0	A:147:C:0:G:3:T:0:N:0:O:11	A:170:C:0:G:0:T:0:N:0:O:0	3,52,0,109	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	194	22	20	0.031578947368421054	0.0	A:92:C:0:G:3:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	2,41,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	193	22	20	0.11666666666666667	0.0	A:1:C:52:G:0:T:7:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	1,49,6,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	193	22	20	0.027777777777777776	0.0	A:3:C:0:G:96:T:0:N:0:O:9	A:0:C:0:G:193:T:0:N:0:O:0	3,41,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13541	C	G	C	16	ignore low frequency variant	Pass	False	False	True	141	196	22	20	0.02127659574468085	0.0	A:0:C:117:G:3:T:0:N:0:O:21	A:0:C:194:G:0:T:0:N:0:O:2	1,62,2,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	192	22	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:192:N:0:O:0	1,48,1,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13568	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	194	22	20	0.03418803418803419	0.0	A:0:C:113:G:0:T:4:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,59,4,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	167	22	20	0.02040816326530612	0.0	A:2:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:167:T:0:N:0:O:0	2,37,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	13869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	167	22	20	0.02	0.0	A:95:C:0:G:2:T:0:N:0:O:3	A:167:C:0:G:0:T:0:N:0:O:0	1,34,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	184	22	20	0.02631578947368421	0.0	A:110:C:1:G:3:T:0:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	3,61,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	184	22	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	2,40,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	201	22	20	0.029411764705882353	0.004975124378109453	A:0:C:119:G:0:T:4:N:0:O:13	A:0:C:199:G:0:T:1:N:0:O:1	0,73,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	113	200	22	20	1.0	0.99	A:0:C:0:G:0:T:113:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:2	59,59,54,54	333.397	1436.5	yes	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	199	22	20	0.03125	0.0	A:3:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	3,59,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	199	22	20	0.03260869565217391	0.0	A:3:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	3,58,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	199	22	20	0.024793388429752067	0.0	A:115:C:0:G:3:T:1:N:0:O:2	A:199:C:0:G:0:T:0:N:0:O:0	3,93,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	178	22	20	0.02127659574468085	0.0	A:90:C:0:G:1:T:2:N:0:O:1	A:178:C:0:G:0:T:0:N:0:O:0	2,33,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	178	22	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	3,33,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	178	22	20	0.05	0.0	A:0:C:4:G:0:T:73:N:0:O:3	A:0:C:0:G:0:T:178:N:0:O:0	0,71,4,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	365	22	20	0.01990049751243781	0.0	A:0:C:184:G:0:T:4:N:0:O:13	A:0:C:365:G:0:T:0:N:0:O:0	0,163,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	190	22	20	0.02608695652173913	0.0	A:0:C:112:G:0:T:3:N:0:O:0	A:0:C:190:G:0:T:0:N:0:O:0	0,78,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	15930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	198	22	20	0.03278688524590164	0.0	A:1:C:4:G:0:T:117:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,50,4,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	198	22	20	0.05063291139240506	0.0	A:0:C:73:G:0:T:4:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,43,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	198	22	20	0.024096385542168676	0.0	A:0:C:80:G:0:T:2:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,57,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	200	22	20	0.031578947368421054	0.0	A:0:C:0:G:3:T:90:N:0:O:2	A:1:C:0:G:0:T:199:N:0:O:0	3,32,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	200	22	20	0.02631578947368421	0.005	A:0:C:0:G:111:T:3:N:0:O:0	A:0:C:0:G:199:T:1:N:0:O:0	0,47,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	200	22	20	0.043478260869565216	0.0	A:0:C:0:G:109:T:5:N:0:O:1	A:0:C:0:G:200:T:0:N:0:O:0	5,55,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	16718	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	210	22	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:210:T:0:N:0:O:0	2,24,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	208	22	20	0.04	0.0	A:4:C:0:G:93:T:0:N:0:O:3	A:0:C:0:G:207:T:1:N:0:O:0	4,26,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	16999	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	193	22	20	0.026785714285714284	0.0	A:109:C:0:G:3:T:0:N:0:O:0	A:193:C:0:G:0:T:0:N:0:O:0	3,37,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	185	367	22	20	0.021621621621621623	0.0	A:4:C:0:G:163:T:0:N:0:O:18	A:0:C:0:G:367:T:0:N:0:O:0	4,45,0,140	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	193	360	22	20	0.031088082901554404	0.0	A:186:C:0:G:6:T:0:N:0:O:1	A:360:C:0:G:0:T:0:N:0:O:0	6,82,0,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17135	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	179	22	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	1,73,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	179	22	20	0.030303030303030304	0.0	A:2:C:0:G:63:T:0:N:0:O:1	A:0:C:0:G:179:T:0:N:0:O:0	2,11,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	179	22	20	0.02666666666666667	0.0	A:72:C:0:G:2:T:0:N:0:O:1	A:179:C:0:G:0:T:0:N:0:O:0	2,17,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	179	22	20	0.02666666666666667	0.0	A:2:C:0:G:0:T:71:N:0:O:2	A:0:C:0:G:0:T:179:N:0:O:0	2,18,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	179	22	20	0.029411764705882353	0.0	A:99:C:0:G:3:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	3,51,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	169	22	20	0.09411764705882353	0.0	A:0:C:77:G:0:T:8:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,50,8,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	169	22	20	0.030534351145038167	0.0	A:4:C:0:G:127:T:0:N:0:O:0	A:0:C:0:G:168:T:1:N:0:O:0	4,44,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	169	22	20	0.021505376344086023	0.0	A:0:C:91:G:0:T:2:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,45,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	169	22	20	0.025210084033613446	0.0	A:112:C:0:G:0:T:3:N:0:O:4	A:169:C:0:G:0:T:0:N:0:O:0	0,52,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	223	345	22	20	0.026905829596412557	0.0	A:0:C:203:G:0:T:6:N:0:O:14	A:0:C:345:G:0:T:0:N:0:O:0	0,126,6,97	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	183	22	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:183:G:0:T:0:N:0:O:0	0,60,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	183	22	20	0.02564102564102564	0.0	A:0:C:105:G:0:T:3:N:0:O:9	A:1:C:182:G:0:T:0:N:0:O:0	0,77,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	183	22	20	0.022988505747126436	0.0	A:2:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	2,28,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	18060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	176	22	20	0.019230769230769232	0.0	A:0:C:139:G:0:T:3:N:0:O:14	A:0:C:175:G:0:T:0:N:0:O:1	0,55,3,101	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	188	22	20	0.043478260869565216	0.0	A:41:C:0:G:0:T:2:N:0:O:3	A:188:C:0:G:0:T:0:N:0:O:0	0,25,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	19194	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	183	22	20	0.02158273381294964	0.0	A:3:C:0:G:132:T:0:N:0:O:4	A:0:C:0:G:183:T:0:N:0:O:0	0,72,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	265	22	20	0.034482758620689655	0.0	A:111:C:0:G:4:T:0:N:0:O:1	A:265:C:0:G:0:T:0:N:0:O:0	4,48,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	265	22	20	0.034782608695652174	0.0	A:4:C:0:G:110:T:0:N:0:O:1	A:0:C:0:G:265:T:0:N:0:O:0	4,43,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	264	22	20	0.19117647058823528	0.0	A:0:C:54:G:0:T:13:N:0:O:1	A:0:C:264:G:0:T:0:N:0:O:0	0,41,13,27	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	197	22	20	0.026785714285714284	0.0	A:0:C:106:G:0:T:3:N:0:O:3	A:1:C:196:G:0:T:0:N:0:O:0	1,81,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	393	22	20	0.026455026455026454	0.0	A:5:C:0:G:184:T:0:N:0:O:0	A:0:C:0:G:393:T:0:N:0:O:0	5,82,0,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	20593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	198	22	20	0.025	0.0	A:117:C:0:G:3:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	3,96,0,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	20615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	198	22	20	0.02586206896551724	0.0	A:3:C:0:G:111:T:0:N:0:O:2	A:0:C:0:G:198:T:0:N:0:O:0	3,91,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	20635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	198	22	20	0.02459016393442623	0.0	A:3:C:0:G:115:T:0:N:0:O:4	A:0:C:0:G:198:T:0:N:0:O:0	3,92,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	198	22	20	0.03508771929824561	0.0	A:0:C:0:G:4:T:110:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	4,89,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	178	22	20	0.024390243902439025	0.0	A:3:C:0:G:119:T:1:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	3,38,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21054	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	178	22	20	0.02	0.0	A:0:C:97:G:0:T:2:N:0:O:1	A:0:C:178:G:0:T:0:N:0:O:0	1,43,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	178	22	20	0.02158273381294964	0.0056179775280898875	A:3:C:0:G:125:T:0:N:0:O:11	A:1:C:0:G:177:T:0:N:0:O:0	2,40,1,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	189	22	20	0.12380952380952381	0.0	A:0:C:0:G:81:T:13:N:0:O:11	A:0:C:0:G:189:T:0:N:0:O:0	0,79,13,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	252	22	20	0.031007751937984496	0.0	A:0:C:123:G:0:T:4:N:0:O:2	A:0:C:252:G:0:T:0:N:0:O:0	0,82,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	193	22	20	0.028037383177570093	0.0	A:0:C:102:G:0:T:3:N:0:O:2	A:0:C:193:G:0:T:0:N:0:O:0	0,58,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	193	22	20	0.020618556701030927	0.0	A:95:C:0:G:0:T:2:N:0:O:0	A:193:C:0:G:0:T:0:N:0:O:0	2,26,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	193	22	20	0.05263157894736842	0.0	A:90:C:0:G:5:T:0:N:0:O:0	A:193:C:0:G:0:T:0:N:0:O:0	5,26,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	193	22	20	0.04918032786885246	0.0	A:6:C:0:G:115:T:0:N:0:O:1	A:0:C:0:G:192:T:1:N:0:O:0	6,51,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	190	22	20	0.04819277108433735	0.0	A:0:C:76:G:0:T:4:N:0:O:3	A:0:C:190:G:0:T:0:N:0:O:0	4,28,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	190	22	20	0.01834862385321101	0.0	A:0:C:95:G:0:T:2:N:0:O:12	A:1:C:189:G:0:T:0:N:0:O:0	0,88,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	136	186	22	20	0.022058823529411766	0.0	A:0:C:0:G:3:T:133:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	3,65,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	198	22	20	0.0380952380952381	0.0	A:0:C:0:G:4:T:99:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:0	4,37,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	166	22	20	0.056074766355140186	0.0	A:6:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:166:T:0:N:0:O:0	6,42,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	22676	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	166	22	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:166:T:0:N:0:O:0	3,45,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	131	186	22	20	0.9312977099236641	0.9946236559139785	A:0:C:0:G:122:T:0:N:0:O:9	A:0:C:0:G:185:T:0:N:0:O:1	50,59,72,72	64.466	1569.3	yes	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	196	22	20	0.03636363636363636	0.0	A:49:C:1:G:2:T:0:N:0:O:3	A:196:C:0:G:0:T:0:N:0:O:0	2,34,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	193	22	20	0.03125	0.0	A:3:C:0:G:87:T:0:N:0:O:6	A:0:C:0:G:192:T:0:N:0:O:1	3,76,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	193	22	20	0.038834951456310676	0.0	A:99:C:0:G:4:T:0:N:0:O:0	A:193:C:0:G:0:T:0:N:0:O:0	4,89,0,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	23696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	196	22	20	0.022222222222222223	0.0	A:129:C:0:G:3:T:0:N:0:O:3	A:196:C:0:G:0:T:0:N:0:O:0	3,120,0,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	23842	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	182	22	20	0.026845637583892617	0.0	A:0:C:4:G:0:T:140:N:0:O:5	A:0:C:0:G:0:T:182:N:0:O:0	0,72,4,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	182	22	20	0.10256410256410256	0.0	A:0:C:105:G:0:T:12:N:0:O:0	A:0:C:182:G:0:T:0:N:0:O:0	0,77,12,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	182	22	20	0.04938271604938271	0.0	A:4:C:0:G:0:T:77:N:0:O:0	A:0:C:0:G:0:T:182:N:0:O:0	3,17,1,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	182	22	20	0.06299212598425197	0.0	A:8:C:0:G:119:T:0:N:0:O:0	A:0:C:0:G:181:T:1:N:0:O:0	8,30,0,97	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24108	T	C	T	16	ignore low frequency variant	Pass	False	False	True	251	343	22	20	0.03187250996015936	0.0	A:0:C:8:G:0:T:242:N:0:O:1	A:0:C:0:G:0:T:343:N:0:O:0	0,140,8,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	168	22	20	0.0547945205479452	0.0	A:0:C:60:G:0:T:4:N:0:O:9	A:0:C:168:G:0:T:0:N:0:O:0	0,61,4,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	168	22	20	0.05714285714285714	0.0	A:6:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:168:T:0:N:0:O:0	6,24,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	168	22	20	0.030303030303030304	0.0	A:3:C:0:G:93:T:0:N:0:O:3	A:0:C:0:G:168:T:0:N:0:O:0	3,18,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	168	22	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:107:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	3,28,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	168	22	20	0.02459016393442623	0.0	A:3:C:0:G:118:T:0:N:0:O:1	A:0:C:0:G:168:T:0:N:0:O:0	2,46,1,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24600	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	194	22	20	0.02112676056338028	0.0	A:0:C:3:G:0:T:138:N:0:O:1	A:0:C:0:G:0:T:194:N:0:O:0	0,73,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	194	22	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	2,58,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	194	22	20	0.049019607843137254	0.0	A:0:C:91:G:0:T:5:N:0:O:6	A:1:C:193:G:0:T:0:N:0:O:0	0,96,5,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	190	22	20	0.030303030303030304	0.0	A:0:C:0:G:3:T:96:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	0,71,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	84	190	22	20	0.047619047619047616	0.0	A:0:C:4:G:0:T:80:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	4,36,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	185	22	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:87:N:0:O:1	A:0:C:0:G:0:T:185:N:0:O:0	0,34,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	185	22	20	0.031914893617021274	0.0	A:0:C:91:G:0:T:3:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,36,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25487	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	185	22	20	0.024390243902439025	0.0	A:3:C:120:G:0:T:0:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,32,3,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	117	185	22	20	1.0	1.0	A:0:C:0:G:0:T:117:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	26,26,91,91	210.0	1931.7	yes	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	25602	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	185	22	20	0.025210084033613446	0.0	A:113:C:0:G:3:T:0:N:0:O:3	A:185:C:0:G:0:T:0:N:0:O:0	3,37,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	190	22	20	0.021505376344086023	0.0	A:2:C:1:G:86:T:0:N:0:O:4	A:0:C:0:G:189:T:1:N:0:O:0	2,42,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	190	22	20	0.022388059701492536	0.005263157894736842	A:3:C:90:G:0:T:0:N:0:O:41	A:1:C:189:G:0:T:0:N:0:O:0	3,66,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	190	22	20	0.041666666666666664	0.0	A:67:C:3:G:0:T:0:N:0:O:2	A:189:C:0:G:1:T:0:N:0:O:0	3,44,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	190	22	20	0.047619047619047616	0.0	A:0:C:100:G:0:T:5:N:0:O:0	A:1:C:189:G:0:T:0:N:0:O:0	0,79,5,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	190	22	20	0.0196078431372549	0.0	A:97:C:0:G:0:T:2:N:0:O:3	A:190:C:0:G:0:T:0:N:0:O:0	0,80,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	189	22	20	0.023255813953488372	0.0	A:84:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,36,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	190	22	20	0.02631578947368421	0.0	A:0:C:73:G:0:T:2:N:0:O:1	A:0:C:190:G:0:T:0:N:0:O:0	1,51,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	190	22	20	0.027777777777777776	0.0	A:70:C:2:G:0:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	2,24,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	190	22	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	2,43,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	204	22	20	0.025423728813559324	0.0	A:114:C:0:G:3:T:0:N:0:O:1	A:204:C:0:G:0:T:0:N:0:O:0	3,60,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	212	375	22	20	0.02358490566037736	0.0	A:5:C:0:G:198:T:0:N:0:O:9	A:0:C:0:G:375:T:0:N:0:O:0	5,77,0,135	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	190	22	20	0.030927835051546393	0.005263157894736842	A:0:C:3:G:0:T:93:N:0:O:1	A:0:C:1:G:0:T:189:N:0:O:0	1,58,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26309	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	191	22	20	0.02197802197802198	0.0	A:0:C:88:G:0:T:2:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,53,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	191	22	20	0.023255813953488372	0.0	A:2:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	2,37,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	191	22	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,66,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	191	22	20	0.015789473684210527	0.0	A:2:C:129:G:0:T:3:N:0:O:56	A:0:C:191:G:0:T:0:N:0:O:0	0,105,3,85	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	191	22	20	0.0379746835443038	0.0	A:0:C:3:G:0:T:76:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	1,51,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	191	22	20	0.03	0.0	A:0:C:97:G:0:T:3:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,63,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	191	22	20	0.025	0.0	A:2:C:0:G:78:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	2,22,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	191	384	22	20	0.041884816753926704	0.0	A:1:C:180:G:0:T:8:N:0:O:2	A:0:C:384:G:0:T:0:N:0:O:0	0,168,8,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	214	384	22	20	0.0514018691588785	0.0	A:0:C:11:G:0:T:203:N:0:O:0	A:0:C:0:G:0:T:384:N:0:O:0	0,165,11,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	194	22	20	0.05102040816326531	0.0	A:0:C:5:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,49,5,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	194	22	20	0.02702702702702703	0.0	A:0:C:3:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,83,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	194	22	20	0.14492753623188406	0.0	A:10:C:0:G:59:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	10,18,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	194	22	20	0.04040404040404041	0.0	A:0:C:95:G:0:T:4:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,80,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	191	22	20	0.04	0.0	A:4:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	3,50,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	170	22	20	0.05319148936170213	0.0	A:5:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:169:T:1:N:0:O:0	5,20,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	170	22	20	0.13432835820895522	0.0	A:0:C:56:G:0:T:9:N:0:O:2	A:0:C:170:G:0:T:0:N:0:O:0	0,50,9,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	170	22	20	0.034482758620689655	0.0	A:0:C:82:G:1:T:3:N:0:O:1	A:0:C:170:G:0:T:0:N:0:O:0	0,51,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	27305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	187	22	20	0.025210084033613446	0.0	A:0:C:3:G:0:T:116:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	0,68,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	187	22	20	0.02040816326530612	0.0	A:0:C:135:G:0:T:3:N:0:O:9	A:0:C:187:G:0:T:0:N:0:O:0	0,71,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	187	22	20	0.02564102564102564	0.0	A:113:C:0:G:3:T:0:N:0:O:1	A:187:C:0:G:0:T:0:N:0:O:0	3,44,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	187	22	20	0.027522935779816515	0.0	A:3:C:0:G:106:T:0:N:0:O:0	A:0:C:0:G:187:T:0:N:0:O:0	3,43,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	28178	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	181	22	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	28194	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	181	22	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:0:C:181:G:0:T:0:N:0:O:0	0,55,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	180	22	20	0.024691358024691357	0.0	A:0:C:74:G:0:T:2:N:0:O:5	A:0:C:180:G:0:T:0:N:0:O:0	0,20,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	28471	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	192	22	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	0,62,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	192	22	20	0.029411764705882353	0.0	A:3:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:190:T:2:N:0:O:0	0,59,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	216	22	20	0.046511627906976744	0.0	A:0:C:40:G:0:T:2:N:0:O:1	A:0:C:216:G:0:T:0:N:0:O:0	0,14,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	28867	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	216	22	20	0.014705882352941176	0.0	A:0:C:1:G:0:T:39:N:0:O:28	A:0:C:0:G:0:T:216:N:0:O:0	0,45,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	216	22	20	0.043478260869565216	0.0	A:5:C:0:G:110:T:0:N:0:O:0	A:0:C:0:G:216:T:0:N:0:O:0	5,6,0,109	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	99	358	22	20	0.13131313131313133	0.0	A:0:C:79:G:0:T:13:N:0:O:7	A:0:C:358:G:0:T:0:N:0:O:0	0,84,13,15	.	249.8	no	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29023	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	358	22	20	0.019801980198019802	0.0	A:1:C:2:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:358:N:0:O:0	0,76,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	191	22	20	0.023529411764705882	0.0	A:2:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	1,42,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	191	22	20	0.02127659574468085	0.010471204188481676	A:0:C:88:G:0:T:2:N:0:O:4	A:0:C:189:G:0:T:2:N:0:O:0	0,38,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	191	22	20	0.02040816326530612	0.010471204188481676	A:95:C:0:G:2:T:0:N:0:O:1	A:189:C:0:G:2:T:0:N:0:O:0	0,33,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	191	22	20	0.04819277108433735	0.0	A:0:C:4:G:0:T:76:N:0:O:3	A:0:C:0:G:0:T:191:N:0:O:0	0,53,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	200	22	20	0.023529411764705882	0.0	A:82:C:0:G:2:T:0:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	0,38,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	202	22	20	0.02631578947368421	0.0	A:74:C:0:G:2:T:0:N:0:O:0	A:202:C:0:G:0:T:0:N:0:O:0	2,26,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	100	193	22	20	0.02	0.0	A:0:C:95:G:2:T:0:N:0:O:3	A:0:C:193:G:0:T:0:N:0:O:0	2,34,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00010	artic-pipeline	NB09	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00010	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	84	22	20	0.0547945205479452	0.0	A:0:C:67:G:0:T:4:N:0:O:2	A:0:C:84:G:0:T:0:N:0:O:0	0,34,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	66	84	22	20	0.9545454545454546	1.0	A:0:C:0:G:1:T:63:N:0:O:2	A:0:C:0:G:0:T:84:N:0:O:0	22,24,41,42	209.237	1471.6	yes	.	.	.	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	302	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	84	22	20	0.03225806451612903	0.0	A:0:C:59:G:0:T:2:N:0:O:1	A:0:C:84:G:0:T:0:N:0:O:0	1,17,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	316	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	77	22	20	0.023809523809523808	0.0	A:0:C:2:G:0:T:81:N:0:O:1	A:0:C:0:G:0:T:77:N:0:O:0	1,48,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	342	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	84	22	20	0.02631578947368421	0.0	A:2:C:1:G:0:T:72:N:0:O:1	A:0:C:0:G:0:T:84:N:0:O:0	2,42,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	170	22	20	0.025210084033613446	0.0	A:116:C:0:G:3:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	3,50,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	652	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	155	22	20	0.02459016393442623	0.0	A:114:C:0:G:3:T:0:N:0:O:5	A:155:C:0:G:0:T:0:N:0:O:0	2,59,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	653	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	155	22	20	0.02586206896551724	0.0	A:3:C:0:G:112:T:0:N:0:O:1	A:0:C:0:G:155:T:0:N:0:O:0	3,49,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	114	22	20	0.022988505747126436	0.008771929824561403	A:2:C:0:G:83:T:0:N:0:O:2	A:1:C:0:G:113:T:0:N:0:O:0	2,35,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	148	22	20	1.0	1.0	A:0:C:0:G:0:T:140:N:0:O:0	A:0:C:0:G:0:T:148:N:0:O:0	73,73,67,67	350.0	1422.0	yes	.	.	.	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	148	22	20	0.06976744186046512	0.0	A:0:C:74:G:0:T:6:N:0:O:6	A:2:C:146:G:0:T:0:N:0:O:0	0,45,6,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	207	22	20	0.08695652173913043	0.004830917874396135	A:0:C:102:G:0:T:10:N:0:O:3	A:0:C:206:G:0:T:1:N:0:O:0	0,31,10,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	1498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	207	22	20	0.026785714285714284	0.0	A:0:C:109:G:0:T:3:N:0:O:0	A:0:C:207:G:0:T:0:N:0:O:0	0,31,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	207	22	20	0.04672897196261682	0.0	A:0:C:5:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:207:N:0:O:0	0,32,5,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	283	301	22	20	0.02120141342756184	0.0	A:0:C:256:G:0:T:6:N:0:O:21	A:1:C:300:G:0:T:0:N:0:O:0	0,101,6,182	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	155	22	20	0.024390243902439025	0.0	A:2:C:0:G:74:T:0:N:0:O:6	A:0:C:0:G:155:T:0:N:0:O:0	2,17,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	155	22	20	0.018404907975460124	0.0	A:3:C:0:G:135:T:0:N:0:O:25	A:0:C:0:G:155:T:0:N:0:O:0	2,75,1,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	173	22	20	0.0375	0.0	A:3:C:0:G:76:T:0:N:0:O:1	A:0:C:0:G:173:T:0:N:0:O:0	3,42,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	173	22	20	0.02564102564102564	0.0	A:76:C:2:G:0:T:0:N:0:O:0	A:173:C:0:G:0:T:0:N:0:O:0	0,40,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	173	22	20	0.03305785123966942	0.0	A:4:C:0:G:114:T:0:N:0:O:3	A:0:C:0:G:173:T:0:N:0:O:0	4,46,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	173	22	20	0.07142857142857142	0.0	A:7:C:0:G:89:T:0:N:0:O:2	A:0:C:0:G:173:T:0:N:0:O:0	7,24,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	2398	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	175	22	20	0.021505376344086023	0.0	A:2:C:0:G:90:T:0:N:0:O:1	A:0:C:0:G:175:T:0:N:0:O:0	2,29,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2536	C	T	C	16	ignore low frequency variant	Pass	False	False	True	289	328	22	20	0.020761245674740483	0.01524390243902439	A:0:C:278:G:0:T:6:N:0:O:5	A:1:C:322:G:0:T:5:N:0:O:0	3,152,3,137	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	2616	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	179	22	20	0.025423728813559324	0.0	A:3:C:0:G:114:T:0:N:0:O:1	A:0:C:0:G:179:T:0:N:0:O:0	2,61,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	117	179	22	20	0.02564102564102564	0.0	A:114:C:3:G:0:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	3,68,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	179	22	20	0.02127659574468085	0.0	A:0:C:91:G:0:T:2:N:0:O:1	A:0:C:179:G:0:T:0:N:0:O:0	0,84,2,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	154	22	20	0.02631578947368421	0.0	A:0:C:3:G:0:T:111:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	3,37,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	120	154	22	20	0.775	1.0	A:0:C:0:G:0:T:93:N:0:O:27	A:0:C:0:G:0:T:154:N:0:O:0	42,69,51,51	202.453	1366.3	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	154	22	20	0.030927835051546393	0.0	A:0:C:3:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	0,48,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	154	22	20	0.03418803418803419	0.006493506493506494	A:0:C:0:G:109:T:4:N:0:O:4	A:0:C:0:G:153:T:1:N:0:O:0	0,47,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	148	22	20	0.03260869565217391	0.0	A:0:C:3:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:148:N:0:O:0	0,42,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3293	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	148	22	20	0.0234375	0.0	A:3:C:123:G:0:T:0:N:0:O:2	A:0:C:148:G:0:T:0:N:0:O:0	0,47,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3365	C	A	C	16	ignore low frequency variant	Pass	False	False	True	87	148	22	20	0.022988505747126436	0.0	A:2:C:79:G:0:T:1:N:0:O:5	A:0:C:148:G:0:T:0:N:0:O:0	0,41,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	148	22	20	0.043010752688172046	0.0	A:0:C:88:G:0:T:4:N:0:O:1	A:0:C:148:G:0:T:0:N:0:O:0	0,34,4,59	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	146	22	20	0.03076923076923077	0.0	A:63:C:0:G:2:T:0:N:0:O:0	A:146:C:0:G:0:T:0:N:0:O:0	2,18,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	149	22	20	0.09411764705882353	0.0	A:0:C:77:G:0:T:8:N:0:O:0	A:0:C:149:G:0:T:0:N:0:O:0	0,58,8,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	162	22	20	0.024096385542168676	0.0	A:0:C:0:G:2:T:65:N:0:O:16	A:0:C:0:G:0:T:162:N:0:O:0	1,45,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	162	22	20	0.025423728813559324	0.0	A:3:C:0:G:115:T:0:N:0:O:0	A:0:C:0:G:162:T:0:N:0:O:0	1,84,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	287	327	22	20	0.020905923344947737	0.0	A:6:C:0:G:264:T:0:N:0:O:17	A:0:C:0:G:326:T:0:N:0:O:1	6,129,0,158	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	164	22	20	0.043010752688172046	0.0	A:88:C:0:G:4:T:0:N:0:O:1	A:164:C:0:G:0:T:0:N:0:O:0	4,24,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	163	22	20	0.02197802197802198	0.0	A:89:C:0:G:0:T:2:N:0:O:0	A:163:C:0:G:0:T:0:N:0:O:0	0,31,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	343	22	20	0.034653465346534656	0.0029154518950437317	A:0:C:0:G:189:T:7:N:0:O:6	A:0:C:0:G:342:T:1:N:0:O:0	0,106,7,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	343	22	20	0.031746031746031744	0.0	A:4:C:0:G:122:T:0:N:0:O:0	A:0:C:0:G:340:T:3:N:0:O:0	0,100,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	179	22	20	0.03007518796992481	0.0	A:124:C:0:G:0:T:4:N:0:O:5	A:179:C:0:G:0:T:0:N:0:O:0	0,54,4,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4505	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	179	22	20	0.021897810218978103	0.00558659217877095	A:3:C:0:G:127:T:0:N:0:O:7	A:1:C:0:G:177:T:1:N:0:O:0	0,32,3,105	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	148	159	22	20	0.02702702702702703	0.0	A:0:C:0:G:4:T:138:N:0:O:6	A:0:C:0:G:0:T:159:N:0:O:0	0,73,4,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	180	22	20	0.11627906976744186	0.0	A:0:C:75:G:0:T:10:N:0:O:1	A:0:C:180:G:0:T:0:N:0:O:0	0,62,10,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	180	22	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:93:N:0:O:6	A:0:C:0:G:0:T:180:N:0:O:0	0,47,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	5968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	184	22	20	0.02112676056338028	0.0	A:3:C:0:G:134:T:0:N:0:O:5	A:0:C:0:G:184:T:0:N:0:O:0	3,69,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	184	22	20	0.02857142857142857	0.0	A:0:C:101:G:0:T:3:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,57,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	184	22	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,66,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	184	22	20	0.032	0.0	A:4:C:0:G:121:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	4,50,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6231	C	T	C	16	ignore low frequency variant	Pass	False	False	True	243	265	22	20	0.0205761316872428	0.0	A:0:C:233:G:0:T:5:N:0:O:5	A:0:C:265:G:0:T:0:N:0:O:0	0,128,5,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	89	22	20	0.05154639175257732	0.0	A:2:C:86:G:1:T:5:N:0:O:3	A:0:C:89:G:0:T:0:N:0:O:0	0,59,5,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	89	22	20	0.023255813953488372	0.0	A:2:C:0:G:81:T:0:N:0:O:3	A:0:C:0:G:88:T:1:N:0:O:0	2,21,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	89	22	20	0.024793388429752067	0.0	A:3:C:0:G:117:T:0:N:0:O:1	A:0:C:0:G:89:T:0:N:0:O:0	1,45,2,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6626	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	185	22	20	0.02654867256637168	0.0	A:108:C:3:G:1:T:0:N:0:O:1	A:185:C:0:G:0:T:0:N:0:O:0	0,53,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6629	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	185	22	20	0.03278688524590164	0.0	A:0:C:112:G:0:T:4:N:0:O:6	A:2:C:183:G:0:T:0:N:0:O:0	0,59,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	185	22	20	0.03636363636363636	0.0	A:4:C:0:G:105:T:0:N:0:O:1	A:0:C:0:G:185:T:0:N:0:O:0	4,47,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	184	22	20	0.021052631578947368	0.0	A:2:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	184	22	20	0.029411764705882353	0.0	A:0:C:0:G:131:T:4:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	2,77,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	184	22	20	0.031914893617021274	0.0	A:91:C:0:G:0:T:3:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	0,74,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	78	136	22	20	0.02564102564102564	0.0	A:0:C:0:G:2:T:75:N:0:O:1	A:0:C:0:G:0:T:136:N:0:O:0	1,39,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	138	22	20	0.034482758620689655	0.0	A:0:C:82:G:0:T:3:N:0:O:2	A:3:C:135:G:0:T:0:N:0:O:0	0,55,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	7399	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	138	22	20	0.024193548387096774	0.0	A:121:C:3:G:0:T:0:N:0:O:0	A:138:C:0:G:0:T:0:N:0:O:0	3,65,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	138	22	20	0.03896103896103896	0.0	A:3:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:138:T:0:N:0:O:0	3,18,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	7595	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	138	22	20	0.02040816326530612	0.0	A:2:C:0:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:138:N:0:O:0	2,56,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	189	22	20	0.025974025974025976	0.0	A:0:C:68:G:1:T:2:N:0:O:6	A:0:C:189:G:0:T:0:N:0:O:0	0,45,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	118	194	22	20	0.03389830508474576	0.0	A:114:C:4:G:0:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	4,37,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	194	22	20	0.025	0.0	A:117:C:0:G:3:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	3,33,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	194	22	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:100:N:0:O:1	A:0:C:0:G:0:T:194:N:0:O:0	0,51,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7998	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	142	22	20	0.024193548387096774	0.0	A:0:C:120:G:0:T:3:N:0:O:1	A:0:C:142:G:0:T:0:N:0:O:0	0,69,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	7999	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	144	22	20	0.02564102564102564	0.0	A:0:C:3:G:0:T:112:N:0:O:2	A:0:C:0:G:0:T:144:N:0:O:0	0,64,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	145	22	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:145:C:0:G:0:T:0:N:0:O:0	3,42,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	8084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	190	145	22	20	0.015789473684210527	0.0	A:3:C:0:G:136:T:0:N:0:O:51	A:0:C:0:G:145:T:0:N:0:O:0	3,75,0,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	203	22	20	0.03333333333333333	0.0	A:0:C:4:G:0:T:116:N:0:O:0	A:0:C:0:G:0:T:203:N:0:O:0	0,74,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	170	22	20	0.02857142857142857	0.0	A:0:C:68:G:0:T:2:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	1,12,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	170	22	20	0.0821917808219178	0.0	A:6:C:1:G:65:T:0:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	6,17,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	171	22	20	0.02197802197802198	0.0	A:0:C:89:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,36,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	171	22	20	0.052083333333333336	0.0	A:0:C:89:G:0:T:5:N:0:O:2	A:0:C:171:G:0:T:0:N:0:O:0	0,34,5,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	171	22	20	0.064	0.0	A:0:C:0:G:117:T:8:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	0,39,8,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	109	22	20	0.015384615384615385	0.0	A:0:C:132:G:0:T:3:N:0:O:60	A:0:C:108:G:0:T:0:N:0:O:1	3,139,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	107	22	20	0.037037037037037035	0.0	A:0:C:3:G:0:T:78:N:0:O:0	A:0:C:0:G:0:T:107:N:0:O:0	3,68,0,13	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	108	22	20	0.025210084033613446	0.0	A:0:C:116:G:0:T:3:N:0:O:0	A:0:C:108:G:0:T:0:N:0:O:0	0,85,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	146	108	22	20	0.02054794520547945	0.0	A:3:C:126:G:0:T:0:N:0:O:17	A:0:C:108:G:0:T:0:N:0:O:0	0,100,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	108	22	20	0.02830188679245283	0.0	A:0:C:97:G:1:T:3:N:0:O:5	A:0:C:108:G:0:T:0:N:0:O:0	0,89,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9953	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	176	22	20	0.036036036036036036	0.0	A:0:C:0:G:107:T:4:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:1	4,56,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	176	22	20	0.04838709677419355	0.0	A:3:C:0:G:59:T:0:N:0:O:0	A:0:C:0:G:176:T:0:N:0:O:0	3,18,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	176	22	20	0.03614457831325301	0.0	A:1:C:75:G:0:T:3:N:0:O:4	A:0:C:176:G:0:T:0:N:0:O:0	3,34,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	120	22	20	0.03225806451612903	0.0	A:3:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:120:T:0:N:0:O:0	3,34,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10283	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	120	22	20	0.0234375	0.0	A:0:C:0:G:124:T:3:N:0:O:1	A:0:C:0:G:120:T:0:N:0:O:0	0,86,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10285	T	G	T	16	ignore low frequency variant	Pass	False	False	True	152	120	22	20	0.019736842105263157	0.0	A:0:C:0:G:3:T:142:N:0:O:7	A:0:C:0:G:0:T:120:N:0:O:0	0,97,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10286	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	120	22	20	0.02564102564102564	0.0	A:114:C:0:G:3:T:0:N:0:O:0	A:120:C:0:G:0:T:0:N:0:O:0	0,69,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	120	22	20	0.0425531914893617	0.0	A:4:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:120:T:0:N:0:O:0	4,38,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	136	22	20	0.07339449541284404	0.0	A:0:C:101:G:0:T:8:N:0:O:0	A:0:C:136:G:0:T:0:N:0:O:0	0,52,8,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	136	22	20	0.026785714285714284	0.04411764705882353	A:0:C:109:G:0:T:3:N:0:O:0	A:0:C:130:G:0:T:6:N:0:O:0	2,44,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	136	22	20	0.024193548387096774	0.0	A:120:C:0:G:3:T:0:N:0:O:1	A:136:C:0:G:0:T:0:N:0:O:0	3,41,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	10858	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	158	22	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:158:C:0:G:0:T:0:N:0:O:0	0,42,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	105	22	20	0.02912621359223301	0.0	A:0:C:0:G:3:T:99:N:0:O:1	A:0:C:0:G:0:T:105:N:0:O:0	3,69,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	11448	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	157	22	20	0.022988505747126436	0.0	A:83:C:0:G:2:T:0:N:0:O:2	A:157:C:0:G:0:T:0:N:0:O:0	2,55,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	11490	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	157	22	20	0.04477611940298507	0.0	A:0:C:63:G:0:T:3:N:0:O:1	A:0:C:156:G:1:T:0:N:0:O:0	0,50,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	157	22	20	0.022727272727272728	0.0	A:84:C:0:G:0:T:2:N:0:O:2	A:157:C:0:G:0:T:0:N:0:O:0	2,49,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	163	22	20	0.06097560975609756	0.0	A:0:C:77:G:0:T:5:N:0:O:0	A:0:C:163:G:0:T:0:N:0:O:0	0,68,5,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	226	130	22	20	0.022123893805309734	0.0	A:0:C:0:G:139:T:5:N:0:O:82	A:0:C:0:G:130:T:0:N:0:O:0	0,57,5,169	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	130	22	20	0.08064516129032258	0.0	A:57:C:0:G:5:T:0:N:0:O:0	A:130:C:0:G:0:T:0:N:0:O:0	0,30,5,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	131	22	20	0.02197802197802198	0.0	A:0:C:72:G:0:T:2:N:0:O:17	A:2:C:128:G:0:T:0:N:0:O:1	0,48,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	130	22	20	0.022900763358778626	0.0	A:3:C:0:G:100:T:0:N:0:O:28	A:0:C:0:G:130:T:0:N:0:O:0	0,103,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	218	183	22	20	0.022935779816513763	0.0	A:0:C:0:G:5:T:211:N:0:O:2	A:0:C:0:G:0:T:183:N:0:O:0	0,135,5,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	83	22	20	0.03529411764705882	0.0	A:0:C:82:G:0:T:3:N:0:O:0	A:0:C:83:G:0:T:0:N:0:O:0	0,59,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	84	22	20	0.03	0.0	A:95:C:0:G:3:T:0:N:0:O:2	A:84:C:0:G:0:T:0:N:0:O:0	3,29,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	84	22	20	0.03125	0.0	A:4:C:0:G:120:T:0:N:0:O:4	A:0:C:0:G:84:T:0:N:0:O:0	4,26,0,102	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	84	22	20	0.025423728813559324	0.0	A:113:C:0:G:3:T:0:N:0:O:2	A:84:C:0:G:0:T:0:N:0:O:0	3,18,0,100	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	91	22	20	0.021897810218978103	0.0	A:0:C:126:G:0:T:3:N:0:O:8	A:0:C:91:G:0:T:0:N:0:O:0	0,76,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	170	91	22	20	0.029411764705882353	0.0	A:5:C:0:G:156:T:0:N:0:O:9	A:0:C:0:G:91:T:0:N:0:O:0	5,80,0,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	146	91	22	20	0.0273972602739726	0.0	A:133:C:0:G:4:T:0:N:0:O:9	A:91:C:0:G:0:T:0:N:0:O:0	4,64,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	180	22	20	0.15625	0.0	A:0:C:54:G:0:T:10:N:0:O:0	A:2:C:178:G:0:T:0:N:0:O:0	0,50,10,14	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	180	22	20	0.02654867256637168	0.0	A:3:C:0:G:101:T:0:N:0:O:9	A:0:C:0:G:179:T:1:N:0:O:0	3,30,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	180	22	20	0.020833333333333332	0.0	A:0:C:93:G:0:T:2:N:0:O:1	A:0:C:180:G:0:T:0:N:0:O:0	1,42,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	80	22	20	0.04032258064516129	0.0	A:5:C:0:G:119:T:0:N:0:O:0	A:0:C:0:G:80:T:0:N:0:O:0	5,46,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	107	22	20	0.02631578947368421	0.0	A:110:C:0:G:3:T:0:N:0:O:1	A:107:C:0:G:0:T:0:N:0:O:0	3,53,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	107	22	20	0.04081632653061224	0.0	A:4:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:107:T:0:N:0:O:0	4,35,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	162	22	20	0.03787878787878788	0.0	A:0:C:111:G:0:T:5:N:0:O:16	A:0:C:162:G:0:T:0:N:0:O:0	0,69,5,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14368	T	A	T	16	ignore low frequency variant	Pass	False	False	True	139	162	22	20	0.02158273381294964	0.0	A:3:C:0:G:0:T:135:N:0:O:1	A:0:C:0:G:0:T:162:N:0:O:0	0,65,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	105	162	22	20	1.0	1.0	A:0:C:0:G:0:T:105:N:0:O:0	A:0:C:0:G:0:T:162:N:0:O:0	43,43,62,62	269.443	1416.9	yes	.	.	.	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	162	22	20	0.02608695652173913	0.0	A:0:C:111:G:0:T:3:N:0:O:1	A:1:C:161:G:0:T:0:N:0:O:0	0,67,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	165	22	20	0.02040816326530612	0.0	A:96:C:0:G:0:T:2:N:0:O:0	A:165:C:0:G:0:T:0:N:0:O:0	2,61,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	125	22	20	0.024193548387096774	0.0	A:0:C:121:G:0:T:3:N:0:O:0	A:1:C:124:G:0:T:0:N:0:O:0	0,77,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14970	T	G	T	16	ignore low frequency variant	Pass	False	False	True	129	125	22	20	0.023255813953488372	0.0	A:0:C:0:G:3:T:114:N:0:O:12	A:0:C:0:G:0:T:125:N:0:O:0	3,68,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	125	22	20	0.02040816326530612	0.0	A:95:C:0:G:0:T:2:N:0:O:1	A:125:C:0:G:0:T:0:N:0:O:0	2,31,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	15011	A	C	A	16	ignore low frequency variant	Pass	False	False	True	134	125	22	20	0.03731343283582089	0.0	A:129:C:5:G:0:T:0:N:0:O:0	A:125:C:0:G:0:T:0:N:0:O:0	5,67,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	15070	C	G	C	16	ignore low frequency variant	Pass	False	False	True	133	125	22	20	0.022556390977443608	0.0	A:0:C:124:G:3:T:0:N:0:O:6	A:0:C:125:G:0:T:0:N:0:O:0	3,73,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	125	22	20	0.03296703296703297	0.0	A:0:C:3:G:0:T:86:N:0:O:2	A:0:C:0:G:0:T:125:N:0:O:0	0,78,3,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	138	22	20	0.02727272727272727	0.0	A:0:C:106:G:0:T:3:N:0:O:1	A:0:C:138:G:0:T:0:N:0:O:0	0,73,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	15493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	138	22	20	0.023076923076923078	0.0	A:3:C:0:G:126:T:0:N:0:O:1	A:0:C:0:G:138:T:0:N:0:O:0	3,67,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	185	22	20	0.06578947368421052	0.0	A:0:C:69:G:0:T:5:N:0:O:2	A:0:C:185:G:0:T:0:N:0:O:0	0,35,5,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	185	22	20	0.03361344537815126	0.0	A:4:C:0:G:108:T:0:N:0:O:7	A:0:C:0:G:184:T:1:N:0:O:0	3,34,1,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	185	22	20	0.03125	0.0	A:0:C:92:G:0:T:3:N:0:O:1	A:0:C:185:G:0:T:0:N:0:O:0	0,55,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	178	22	20	0.05263157894736842	0.0	A:0:C:90:G:0:T:5:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	0,63,5,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	178	22	20	0.04081632653061224	0.0	A:0:C:94:G:0:T:4:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	1,53,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	114	178	22	20	0.02631578947368421	0.0	A:0:C:110:G:3:T:0:N:0:O:1	A:0:C:178:G:0:T:0:N:0:O:0	3,44,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	183	22	20	0.031746031746031744	0.00546448087431694	A:0:C:0:G:119:T:4:N:0:O:3	A:0:C:0:G:182:T:1:N:0:O:0	4,55,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16587	T	A	T	16	ignore low frequency variant	Pass	False	False	True	139	183	22	20	0.02158273381294964	0.0	A:3:C:0:G:0:T:134:N:0:O:2	A:0:C:0:G:0:T:183:N:0:O:0	2,63,1,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	183	22	20	0.04807692307692308	0.0	A:5:C:0:G:96:T:0:N:0:O:3	A:0:C:0:G:183:T:0:N:0:O:0	5,24,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	183	22	20	0.0196078431372549	0.0	A:0:C:97:G:0:T:2:N:0:O:3	A:0:C:183:G:0:T:0:N:0:O:0	1,63,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	152	22	20	0.046511627906976744	0.0	A:0:C:4:G:0:T:82:N:0:O:0	A:0:C:0:G:0:T:152:N:0:O:0	0,31,4,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	152	22	20	0.022222222222222223	0.0	A:0:C:0:G:2:T:85:N:0:O:3	A:0:C:0:G:0:T:152:N:0:O:0	0,32,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	152	22	20	0.024691358024691357	0.0	A:79:C:2:G:0:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	2,22,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	91	22	20	0.058823529411764705	0.0	A:4:C:0:G:64:T:0:N:0:O:0	A:0:C:0:G:91:T:0:N:0:O:0	4,15,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	91	22	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:91:C:0:G:0:T:0:N:0:O:0	2,49,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	85	22	20	0.05555555555555555	0.0	A:0:C:84:G:0:T:5:N:0:O:1	A:0:C:85:G:0:T:0:N:0:O:0	0,58,5,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	17533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	85	22	20	0.061224489795918366	0.058823529411764705	A:9:C:0:G:137:T:0:N:0:O:1	A:5:C:0:G:80:T:0:N:0:O:0	3,63,6,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	85	22	20	0.024	0.0	A:3:C:0:G:122:T:0:N:0:O:0	A:0:C:0:G:85:T:0:N:0:O:0	2,38,1,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	85	22	20	0.031914893617021274	0.0	A:0:C:90:G:0:T:3:N:0:O:1	A:0:C:85:G:0:T:0:N:0:O:0	0,54,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	210	239	22	20	0.023809523809523808	0.0	A:0:C:200:G:0:T:5:N:0:O:5	A:1:C:237:G:0:T:0:N:0:O:1	0,114,5,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	176	22	20	0.025	0.0	A:0:C:78:G:0:T:2:N:0:O:0	A:0:C:176:G:0:T:0:N:0:O:0	0,39,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	182	22	20	0.020134228187919462	0.0	A:0:C:145:G:0:T:3:N:0:O:1	A:0:C:182:G:0:T:0:N:0:O:0	0,92,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	182	22	20	0.04	0.0	A:0:C:1:G:4:T:95:N:0:O:0	A:0:C:0:G:0:T:182:N:0:O:0	3,41,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	182	22	20	0.02027027027027027	0.0	A:0:C:144:G:0:T:3:N:0:O:1	A:0:C:182:G:0:T:0:N:0:O:0	0,95,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	99	22	20	0.03409090909090909	0.0	A:3:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:98:T:1:N:0:O:0	3,12,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	19029	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	104	22	20	0.04054054054054054	0.04807692307692308	A:0:C:141:G:0:T:6:N:0:O:1	A:0:C:99:G:0:T:5:N:0:O:0	4,57,2,91	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	19065	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	104	22	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:104:N:0:O:0	0,53,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	230	22	20	0.05128205128205128	0.0	A:111:C:0:G:6:T:0:N:0:O:0	A:230:C:0:G:0:T:0:N:0:O:0	5,57,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	230	22	20	0.1388888888888889	0.0	A:0:C:61:G:1:T:10:N:0:O:0	A:0:C:230:G:0:T:0:N:0:O:0	0,53,10,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	19980	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	174	22	20	0.019801980198019802	0.005747126436781609	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:1:G:0:T:173:N:0:O:0	0,48,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	174	22	20	0.02727272727272727	0.0	A:0:C:106:G:0:T:3:N:0:O:1	A:0:C:174:G:0:T:0:N:0:O:0	1,51,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	186	22	20	0.02247191011235955	0.0	A:2:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	2,51,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	20668	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	164	22	20	0.021897810218978103	0.0	A:3:C:0:G:133:T:0:N:0:O:1	A:0:C:0:G:164:T:0:N:0:O:0	3,83,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	20719	C	T	C	16	ignore low frequency variant	Pass	False	False	True	179	164	22	20	0.027932960893854747	0.018292682926829267	A:0:C:171:G:0:T:5:N:0:O:3	A:0:C:161:G:0:T:3:N:0:O:0	3,104,2,75	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	165	164	22	20	0.030303030303030304	0.0	A:160:C:0:G:5:T:0:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	5,81,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	164	22	20	0.04878048780487805	0.0	A:6:C:0:G:117:T:0:N:0:O:0	A:0:C:0:G:164:T:0:N:0:O:0	6,56,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	164	22	20	0.03496503496503497	0.0	A:0:C:128:G:0:T:5:N:0:O:10	A:1:C:163:G:0:T:0:N:0:O:0	5,75,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	177	22	20	0.10784313725490197	0.005649717514124294	A:1:C:0:G:80:T:11:N:0:O:10	A:0:C:0:G:176:T:1:N:0:O:0	0,68,11,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21150	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	178	22	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:178:C:0:G:0:T:0:N:0:O:0	1,50,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	240	22	20	0.030303030303030304	0.0	A:3:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:237:T:3:N:0:O:0	3,33,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	165	22	20	0.024390243902439025	0.0	A:0:C:80:G:0:T:2:N:0:O:0	A:0:C:165:G:0:T:0:N:0:O:0	0,48,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	165	22	20	0.020833333333333332	0.0	A:93:C:0:G:0:T:2:N:0:O:1	A:165:C:0:G:0:T:0:N:0:O:0	2,27,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	165	22	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:165:C:0:G:0:T:0:N:0:O:0	2,23,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	165	22	20	0.03361344537815126	0.0	A:4:C:0:G:112:T:0:N:0:O:3	A:0:C:0:G:164:T:1:N:0:O:0	4,46,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	126	22	20	0.060240963855421686	0.0	A:0:C:76:G:0:T:5:N:0:O:2	A:0:C:126:G:0:T:0:N:0:O:0	4,25,1,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	182	22	20	0.028368794326241134	0.0	A:4:C:0:G:137:T:0:N:0:O:0	A:0:C:0:G:182:T:0:N:0:O:0	4,74,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	181	22	20	0.04878048780487805	0.0055248618784530384	A:0:C:0:G:6:T:116:N:0:O:1	A:0:C:0:G:1:T:180:N:0:O:0	6,45,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	22518	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	83	22	20	0.02	0.0	A:2:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:83:T:0:N:0:O:0	2,43,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	22686	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	102	22	20	0.01990049751243781	0.00980392156862745	A:0:C:195:G:0:T:4:N:0:O:2	A:0:C:101:G:0:T:1:N:0:O:0	3,79,1,122	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	146	140	22	20	0.02054794520547945	0.0	A:0:C:0:G:139:T:3:N:0:O:4	A:0:C:0:G:140:T:0:N:0:O:0	0,74,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	22956	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	140	22	20	0.02586206896551724	0.0	A:113:C:0:G:0:T:3:N:0:O:0	A:140:C:0:G:0:T:0:N:0:O:0	0,61,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	22988	G	C	G	16	ignore low frequency variant	Pass	False	False	True	140	140	22	20	0.02857142857142857	0.0	A:0:C:4:G:136:T:0:N:0:O:0	A:1:C:0:G:139:T:0:N:0:O:0	4,66,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	22989	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	140	22	20	0.02666666666666667	0.0	A:4:C:0:G:146:T:0:N:0:O:0	A:0:C:0:G:140:T:0:N:0:O:0	3,77,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	140	22	20	0.021897810218978103	0.0	A:0:C:3:G:0:T:133:N:0:O:1	A:0:C:0:G:0:T:140:N:0:O:0	0,93,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23113	T	A	T	16	ignore low frequency variant	Pass	False	False	True	146	140	22	20	0.02054794520547945	0.0	A:3:C:0:G:0:T:139:N:0:O:4	A:0:C:0:G:0:T:140:N:0:O:0	3,96,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	130	121	22	20	0.9461538461538461	1.0	A:0:C:0:G:123:T:0:N:0:O:7	A:0:C:0:G:121:T:0:N:0:O:0	80,87,43,43	70.0	1635.7	yes	.	.	.	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	188	22	20	0.025423728813559324	0.0	A:0:C:112:G:0:T:3:N:0:O:3	A:0:C:188:G:0:T:0:N:0:O:0	0,57,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	186	22	20	0.03	0.0	A:0:C:3:G:0:T:96:N:0:O:1	A:0:C:0:G:0:T:186:N:0:O:0	0,48,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	188	22	20	0.021052631578947368	0.0	A:0:C:91:G:0:T:2:N:0:O:2	A:0:C:188:G:0:T:0:N:0:O:0	0,55,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	189	22	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:1	2,37,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	117	22	20	0.23214285714285715	0.0	A:0:C:85:G:0:T:26:N:0:O:1	A:0:C:117:G:0:T:0:N:0:O:0	0,61,26,51	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	117	22	20	0.02857142857142857	0.017094017094017096	A:0:C:3:G:0:T:102:N:0:O:0	A:0:C:2:G:0:T:115:N:0:O:0	0,55,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	117	22	20	0.022222222222222223	0.0	A:2:C:0:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:117:N:0:O:0	1,11,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	117	22	20	0.07216494845360824	0.0	A:0:C:89:G:0:T:7:N:0:O:1	A:0:C:117:G:0:T:0:N:0:O:0	0,56,7,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	103	22	20	0.05084745762711865	0.0	A:0:C:56:G:0:T:3:N:0:O:0	A:0:C:103:G:0:T:0:N:0:O:0	0,34,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	103	22	20	0.038461538461538464	0.0	A:0:C:43:G:1:T:2:N:0:O:6	A:0:C:103:G:0:T:0:N:0:O:0	0,44,2,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	103	22	20	0.03389830508474576	0.0	A:4:C:0:G:114:T:0:N:0:O:0	A:0:C:0:G:103:T:0:N:0:O:0	4,20,0,98	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24310	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	103	22	20	0.03361344537815126	0.0	A:0:C:108:G:0:T:4:N:0:O:7	A:0:C:103:G:0:T:0:N:0:O:0	0,48,4,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	144	151	22	20	0.027777777777777776	0.0	A:4:C:137:G:0:T:3:N:0:O:0	A:0:C:151:G:0:T:0:N:0:O:0	4,87,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	177	151	22	20	0.022598870056497175	0.0	A:164:C:0:G:0:T:4:N:0:O:9	A:151:C:0:G:0:T:0:N:0:O:0	4,130,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	151	22	20	0.0423728813559322	0.0	A:0:C:111:G:0:T:5:N:0:O:2	A:2:C:149:G:0:T:0:N:0:O:0	0,106,5,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24926	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	86	22	20	0.02	0.0	A:1:C:0:G:97:T:2:N:0:O:0	A:0:C:0:G:86:T:0:N:0:O:0	1,66,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	149	128	22	20	0.020134228187919462	0.0	A:0:C:0:G:3:T:145:N:0:O:1	A:0:C:0:G:0:T:128:N:0:O:0	3,54,0,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	128	22	20	0.024	0.0078125	A:0:C:113:G:0:T:3:N:0:O:9	A:1:C:126:G:0:T:1:N:0:O:0	2,71,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25535	T	C	T	16	ignore low frequency variant	Pass	False	False	True	158	128	22	20	0.02531645569620253	0.0078125	A:0:C:4:G:0:T:154:N:0:O:0	A:1:C:1:G:0:T:126:N:0:O:0	0,80,4,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	128	22	20	0.021505376344086023	0.0	A:0:C:88:G:0:T:2:N:0:O:3	A:0:C:128:G:0:T:0:N:0:O:0	0,78,2,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	126	22	20	0.030303030303030304	0.0	A:0:C:0:G:3:T:96:N:0:O:0	A:0:C:0:G:0:T:126:N:0:O:0	3,28,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	156	128	22	20	0.9935897435897436	1.0	A:0:C:0:G:1:T:155:N:0:O:0	A:0:C:0:G:0:T:128:N:0:O:0	61,61,94,95	210.0	2487.1	yes	.	.	.	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	176	22	20	0.023809523809523808	0.0	A:2:C:1:G:78:T:0:N:0:O:3	A:0:C:0:G:176:T:0:N:0:O:0	2,40,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	176	22	20	0.02586206896551724	0.0	A:108:C:0:G:3:T:0:N:0:O:5	A:176:C:0:G:0:T:0:N:0:O:0	3,66,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	176	22	20	0.02247191011235955	0.0	A:86:C:0:G:2:T:0:N:0:O:1	A:176:C:0:G:0:T:0:N:0:O:0	2,44,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	176	22	20	0.030927835051546393	0.0	A:0:C:91:G:0:T:3:N:0:O:3	A:0:C:176:G:0:T:0:N:0:O:0	2,69,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	176	22	20	0.05	0.0	A:75:C:4:G:0:T:0:N:0:O:1	A:176:C:0:G:0:T:0:N:0:O:0	4,38,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25892	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	176	22	20	0.02666666666666667	0.0	A:0:C:0:G:2:T:72:N:0:O:1	A:0:C:0:G:0:T:176:N:0:O:0	2,35,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	176	22	20	0.038461538461538464	0.0	A:4:C:0:G:99:T:0:N:0:O:1	A:0:C:0:G:176:T:0:N:0:O:0	4,59,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	161	22	20	0.034782608695652174	0.0	A:110:C:0:G:4:T:0:N:0:O:1	A:161:C:0:G:0:T:0:N:0:O:0	4,58,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26029	C	A	C	16	ignore low frequency variant	Pass	False	False	True	143	161	22	20	0.027972027972027972	0.006211180124223602	A:4:C:138:G:0:T:0:N:0:O:1	A:1:C:160:G:0:T:0:N:0:O:0	2,87,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	26132	A	C	A	16	ignore low frequency variant	Pass	False	False	True	88	161	22	20	0.022727272727272728	0.0	A:86:C:2:G:0:T:0:N:0:O:0	A:161:C:0:G:0:T:0:N:0:O:0	1,68,1,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	155	22	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:155:T:0:N:0:O:0	2,40,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	155	22	20	0.019801980198019802	0.0	A:2:C:0:G:97:T:0:N:0:O:2	A:0:C:0:G:154:T:1:N:0:O:0	2,29,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	260	287	22	20	0.023076923076923078	0.0	A:0:C:254:G:0:T:6:N:0:O:0	A:0:C:287:G:0:T:0:N:0:O:0	0,223,6,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	311	286	22	20	0.028938906752411574	0.0	A:0:C:9:G:0:T:302:N:0:O:0	A:0:C:0:G:0:T:286:N:0:O:0	0,232,9,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	148	22	20	0.020134228187919462	0.0	A:144:C:0:G:3:T:0:N:0:O:2	A:148:C:0:G:0:T:0:N:0:O:0	3,107,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	149	22	20	0.19387755102040816	0.0	A:19:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:149:T:0:N:0:O:0	19,32,0,66	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	185	149	22	20	0.03783783783783784	0.0	A:0:C:176:G:0:T:7:N:0:O:2	A:0:C:149:G:0:T:0:N:0:O:0	0,161,7,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	145	22	20	0.03205128205128205	0.0	A:151:C:0:G:5:T:0:N:0:O:0	A:144:C:0:G:0:T:0:N:0:O:1	4,102,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	306	271	22	20	0.0196078431372549	0.0	A:0:C:284:G:0:T:6:N:0:O:16	A:0:C:271:G:0:T:0:N:0:O:0	0,246,6,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	126	22	20	0.0380952380952381	0.0	A:98:C:0:G:4:T:0:N:0:O:3	A:126:C:0:G:0:T:0:N:0:O:0	4,37,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	126	22	20	0.07142857142857142	0.0	A:0:C:91:G:0:T:7:N:0:O:0	A:0:C:126:G:0:T:0:N:0:O:0	0,67,7,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	27224	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	121	22	20	0.020618556701030927	0.0	A:95:C:0:G:2:T:0:N:0:O:0	A:121:C:0:G:0:T:0:N:0:O:0	2,24,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	27407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	121	22	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:109:N:0:O:1	A:0:C:0:G:0:T:121:N:0:O:0	1,65,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	27457	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	122	22	20	0.022388059701492536	0.0	A:3:C:0:G:130:T:0:N:0:O:1	A:0:C:0:G:122:T:0:N:0:O:0	3,53,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	146	22	20	0.02	0.0	A:2:C:98:G:0:T:0:N:0:O:0	A:0:C:146:G:0:T:0:N:0:O:0	2,67,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	28215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	67	22	20	0.02531645569620253	0.0	A:0:C:2:G:0:T:77:N:0:O:0	A:0:C:0:G:0:T:67:N:0:O:0	2,51,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	67	22	20	0.02	0.0	A:2:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:67:T:0:N:0:O:0	2,60,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	132	22	20	0.02127659574468085	0.0	A:0:C:91:G:0:T:2:N:0:O:1	A:0:C:132:G:0:T:0:N:0:O:0	1,53,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	158	22	20	0.030303030303030304	0.0	A:0:C:93:G:0:T:3:N:0:O:3	A:0:C:158:G:0:T:0:N:0:O:0	0,29,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	167	22	20	0.04	0.0	A:5:C:0:G:119:T:0:N:0:O:1	A:0:C:0:G:167:T:0:N:0:O:0	5,9,0,116	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	167	22	20	0.020833333333333332	0.0	A:0:C:94:G:0:T:2:N:0:O:0	A:0:C:167:G:0:T:0:N:0:O:0	0,27,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	28926	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	167	22	20	0.03225806451612903	0.0	A:0:C:90:G:0:T:3:N:0:O:0	A:0:C:167:G:0:T:0:N:0:O:0	0,27,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29020	A	G	A	16	ignore low frequency variant	Pass	False	False	True	155	260	22	20	0.025806451612903226	0.0	A:147:C:0:G:4:T:0:N:0:O:4	A:260:C:0:G:0:T:0:N:0:O:0	0,112,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	264	22	20	0.07936507936507936	0.0	A:0:C:114:G:0:T:10:N:0:O:2	A:0:C:264:G:0:T:0:N:0:O:0	0,106,10,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	92	156	22	20	0.021739130434782608	0.0	A:0:C:2:G:90:T:0:N:0:O:0	A:0:C:0:G:156:T:0:N:0:O:0	2,47,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29272	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	156	22	20	0.023809523809523808	0.019230769230769232	A:0:C:120:G:0:T:3:N:0:O:3	A:0:C:153:G:0:T:3:N:0:O:0	1,71,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	171	22	20	0.046511627906976744	0.0	A:82:C:0:G:4:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	0,52,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	172	22	20	0.02727272727272727	0.0	A:0:C:106:G:0:T:3:N:0:O:1	A:0:C:172:G:0:T:0:N:0:O:0	0,68,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	172	22	20	0.022988505747126436	0.0	A:84:C:0:G:2:T:0:N:0:O:1	A:172:C:0:G:0:T:0:N:0:O:0	2,22,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	172	22	20	0.05154639175257732	0.0	A:5:C:0:G:79:T:0:N:0:O:13	A:0:C:0:G:172:T:0:N:0:O:0	5,26,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	29701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	185	22	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:185:T:0:N:0:O:0	2,62,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00015	artic-pipeline	NB11	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00015	artic-pipeline	NB11	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	197	22	20	0.05714285714285714	0.0	A:0:C:66:G:0:T:4:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,38,4,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	197	22	20	0.07407407407407407	0.0	A:4:C:0:G:50:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	4,11,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	151	401	22	20	0.026490066225165563	0.0	A:0:C:147:G:0:T:4:N:0:O:0	A:0:C:401:G:0:T:0:N:0:O:0	0,97,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	602	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	364	22	20	0.02097902097902098	0.02197802197802198	A:3:C:0:G:136:T:0:N:0:O:4	A:8:C:0:G:356:T:0:N:0:O:0	2,36,1,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	938	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	207	22	20	0.03007518796992481	0.028985507246376812	A:128:C:0:G:4:T:0:N:0:O:1	A:201:C:0:G:6:T:0:N:0:O:0	1,48,3,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	197	22	20	0.03333333333333333	0.0	A:0:C:3:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,49,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	197	22	20	0.05555555555555555	0.0	A:0:C:94:G:0:T:6:N:0:O:8	A:1:C:196:G:0:T:0:N:0:O:0	0,53,6,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	197	22	20	0.042105263157894736	0.005076142131979695	A:4:C:0:G:90:T:0:N:0:O:1	A:1:C:0:G:194:T:2:N:0:O:0	4,36,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	238	397	22	20	0.02100840336134454	0.0	A:5:C:0:G:232:T:0:N:0:O:1	A:0:C:0:G:397:T:0:N:0:O:0	5,96,0,142	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	283	22	20	0.034482758620689655	0.0	A:1:C:111:G:0:T:4:N:0:O:0	A:0:C:283:G:0:T:0:N:0:O:0	0,51,4,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	283	22	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:103:N:0:O:0	A:0:C:0:G:0:T:283:N:0:O:0	0,48,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	198	22	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	2,14,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	201	22	20	0.0673076923076923	0.0	A:0:C:7:G:0:T:93:N:0:O:4	A:0:C:0:G:0:T:201:N:0:O:0	0,60,7,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	1780	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	201	22	20	0.022727272727272728	0.0	A:0:C:126:G:0:T:3:N:0:O:3	A:0:C:201:G:0:T:0:N:0:O:0	1,67,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	202	22	20	0.07291666666666667	0.0	A:7:C:0:G:87:T:0:N:0:O:2	A:0:C:0:G:202:T:0:N:0:O:0	7,26,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	2480	A	G	G	17	accept high frequency variant	Pass	False	True	True	88	200	22	20	0.9204545454545454	1.0	A:1:C:0:G:81:T:0:N:0:O:6	A:0:C:0:G:200:T:0:N:0:O:0	25,32,56,56	348.474	1531.6	yes	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	2558	C	T	T	17	accept high frequency variant	Pass	False	True	True	272	398	22	20	0.9816176470588235	1.0	A:0:C:5:G:0:T:267:N:0:O:0	A:0:C:0:G:0:T:398:N:0:O:0	92,93,175,179	69.237	1386.0	yes	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	209	22	20	0.02247191011235955	0.0	A:0:C:84:G:0:T:2:N:0:O:3	A:0:C:209:G:0:T:0:N:0:O:0	0,64,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	208	22	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:208:N:0:O:0	0,58,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	199	22	20	0.023529411764705882	0.0	A:83:C:2:G:0:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,25,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3058	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	199	22	20	0.0425531914893617	0.04522613065326633	A:135:C:0:G:6:T:0:N:0:O:0	A:190:C:0:G:9:T:0:N:0:O:0	3,40,3,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	110	199	22	20	0.05454545454545454	0.0	A:0:C:0:G:91:T:6:N:0:O:13	A:0:C:0:G:199:T:0:N:0:O:0	0,48,6,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	3181	A	T	A	16	ignore low frequency variant	Pass	False	False	True	285	399	22	20	0.02456140350877193	0.017543859649122806	A:278:C:0:G:0:T:7:N:0:O:0	A:392:C:0:G:0:T:7:N:0:O:0	1,93,6,192	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	200	22	20	0.0423728813559322	0.0	A:0:C:5:G:0:T:113:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	0,65,5,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	200	22	20	0.02608695652173913	0.0	A:112:C:0:G:0:T:3:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	0,66,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3369	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	200	22	20	0.0234375	0.0	A:0:C:124:G:0:T:3:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	1,58,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	200	22	20	0.030927835051546393	0.0	A:0:C:93:G:0:T:3:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,47,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	200	22	20	0.020689655172413793	0.0	A:142:C:0:G:3:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	3,54,0,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	200	22	20	0.08571428571428572	0.0	A:0:C:96:G:0:T:9:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,86,9,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	199	22	20	0.0379746835443038	0.0	A:0:C:0:G:3:T:60:N:0:O:16	A:0:C:0:G:0:T:199:N:0:O:0	0,36,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	199	22	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	0,74,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	199	22	20	0.03571428571428571	0.020100502512562814	A:135:C:0:G:5:T:0:N:0:O:0	A:195:C:0:G:4:T:0:N:0:O:0	5,71,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4003	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	199	22	20	0.048	0.04020100502512563	A:0:C:6:G:0:T:117:N:0:O:2	A:0:C:8:G:0:T:191:N:0:O:0	5,71,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	282	403	22	20	0.02127659574468085	0.0	A:6:C:0:G:257:T:0:N:0:O:19	A:0:C:0:G:403:T:0:N:0:O:0	6,132,0,150	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4179	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	204	22	20	0.05	0.024509803921568627	A:75:C:0:G:4:T:0:N:0:O:1	A:199:C:0:G:5:T:0:N:0:O:0	2,30,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4205	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	204	22	20	0.023529411764705882	0.0	A:0:C:0:G:83:T:2:N:0:O:0	A:0:C:0:G:204:T:0:N:0:O:0	1,31,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	204	22	20	0.019417475728155338	0.0	A:0:C:97:G:0:T:2:N:0:O:4	A:0:C:204:G:0:T:0:N:0:O:0	0,44,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	211	403	22	20	0.02843601895734597	0.0024813895781637717	A:0:C:0:G:195:T:6:N:0:O:10	A:0:C:0:G:402:T:1:N:0:O:0	0,143,6,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	200	403	22	20	0.03	0.0024813895781637717	A:0:C:0:G:171:T:6:N:0:O:23	A:0:C:0:G:402:T:1:N:0:O:0	0,149,6,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	200	22	20	0.023076923076923078	0.0	A:0:C:0:G:127:T:3:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,87,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	4912	A	C	C	17	accept high frequency variant	Pass	False	True	True	162	200	22	20	0.9876543209876543	1.0	A:1:C:160:G:0:T:0:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	116,118,44,44	206.227	2471.1	yes	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	153	201	22	20	0.026143790849673203	0.0	A:4:C:0:G:0:T:137:N:0:O:12	A:0:C:0:G:0:T:201:N:0:O:0	2,82,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	5436	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	199	22	20	0.02	0.0	A:145:C:0:G:3:T:0:N:0:O:2	A:199:C:0:G:0:T:0:N:0:O:0	3,70,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	199	22	20	0.021739130434782608	0.0	A:3:C:0:G:134:T:0:N:0:O:1	A:0:C:0:G:198:T:1:N:0:O:0	0,71,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	5704	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	108	22	20	0.046153846153846156	0.037037037037037035	A:0:C:0:G:123:T:6:N:0:O:1	A:0:C:0:G:104:T:4:N:0:O:0	4,63,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	108	22	20	0.09523809523809523	0.0	A:0:C:54:G:0:T:6:N:0:O:3	A:0:C:108:G:0:T:0:N:0:O:0	0,49,6,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	5739	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	108	22	20	0.031578947368421054	0.0	A:3:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:108:T:0:N:0:O:0	3,49,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	5853	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	89	22	20	0.021052631578947368	0.0	A:2:C:0:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:89:N:0:O:0	2,35,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	198	22	20	0.04032258064516129	0.0	A:0:C:119:G:0:T:5:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,61,5,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	198	22	20	0.14457831325301204	0.0	A:0:C:71:G:0:T:12:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,56,12,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	200	22	20	0.0449438202247191	0.0	A:0:C:85:G:0:T:4:N:0:O:0	A:1:C:199:G:0:T:0:N:0:O:0	0,53,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6589	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	199	22	20	0.023622047244094488	0.0	A:3:C:0:G:117:T:0:N:0:O:7	A:0:C:0:G:199:T:0:N:0:O:0	1,56,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	199	22	20	0.025210084033613446	0.0	A:0:C:115:G:0:T:3:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,77,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	199	22	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	2,42,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	211	397	22	20	0.023696682464454975	0.0	A:0:C:201:G:0:T:5:N:0:O:5	A:0:C:397:G:0:T:0:N:0:O:0	0,136,5,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	6992	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	200	22	20	0.05	0.055	A:0:C:0:G:6:T:112:N:0:O:2	A:0:C:0:G:11:T:189:N:0:O:0	4,56,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	198	22	20	0.05952380952380952	0.0	A:77:C:0:G:0:T:5:N:0:O:2	A:198:C:0:G:0:T:0:N:0:O:0	0,52,5,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	197	22	20	0.04597701149425287	0.0	A:0:C:82:G:0:T:4:N:0:O:1	A:0:C:197:G:0:T:0:N:0:O:0	0,58,4,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	7451	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	197	22	20	0.078125	0.050761421319796954	A:118:C:0:G:10:T:0:N:0:O:0	A:187:C:0:G:10:T:0:N:0:O:0	5,59,5,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	7557	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	197	22	20	0.02459016393442623	0.0	A:3:C:0:G:107:T:0:N:0:O:12	A:0:C:0:G:197:T:0:N:0:O:0	3,65,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	200	22	20	0.022727272727272728	0.0	A:129:C:0:G:0:T:3:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	3,52,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	7872	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	199	22	20	0.043478260869565216	0.06030150753768844	A:0:C:6:G:0:T:132:N:0:O:0	A:0:C:12:G:0:T:187:N:0:O:0	4,58,2,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	8092	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	199	22	20	0.09036144578313253	0.09547738693467336	A:0:C:133:G:0:T:15:N:0:O:18	A:0:C:180:G:0:T:19:N:0:O:0	9,82,6,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	315	22	20	0.05555555555555555	0.0	A:68:C:0:G:4:T:0:N:0:O:0	A:315:C:0:G:0:T:0:N:0:O:0	4,24,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	315	22	20	0.02830188679245283	0.0	A:3:C:0:G:100:T:0:N:0:O:3	A:0:C:0:G:315:T:0:N:0:O:0	3,34,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	8880	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	121	22	20	0.022727272727272728	0.008264462809917356	A:0:C:86:G:0:T:2:N:0:O:0	A:0:C:120:G:0:T:1:N:0:O:0	0,50,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	111	22	20	0.09230769230769231	0.0	A:6:C:0:G:58:T:0:N:0:O:1	A:0:C:0:G:111:T:0:N:0:O:0	6,9,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	98	22	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:98:N:0:O:0	2,43,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	200	22	20	0.019417475728155338	0.0	A:2:C:0:G:0:T:96:N:0:O:5	A:0:C:0:G:0:T:200:N:0:O:0	2,38,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9226	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	200	22	20	0.028368794326241134	0.005	A:0:C:137:G:0:T:4:N:0:O:0	A:0:C:199:G:0:T:1:N:0:O:0	0,67,4,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	176	22	20	0.02702702702702703	0.0	A:0:C:107:G:0:T:3:N:0:O:1	A:0:C:176:G:0:T:0:N:0:O:0	0,59,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	9248	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	176	22	20	0.11764705882352941	0.08522727272727272	A:16:C:0:G:119:T:0:N:0:O:1	A:15:C:0:G:161:T:0:N:0:O:0	6,59,10,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9381	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	176	22	20	0.072	0.08522727272727272	A:9:C:0:G:116:T:0:N:0:O:0	A:15:C:0:G:161:T:0:N:0:O:0	3,50,6,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	176	22	20	0.031007751937984496	0.011363636363636364	A:0:C:0:G:125:T:4:N:0:O:0	A:0:C:0:G:174:T:2:N:0:O:0	0,55,4,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	196	22	20	0.02717391304347826	0.0	A:0:C:123:G:0:T:5:N:0:O:56	A:0:C:196:G:0:T:0:N:0:O:0	5,141,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	196	22	20	0.025974025974025976	0.0	A:0:C:2:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	2,62,0,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	294	22	20	0.022222222222222223	0.0	A:2:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:294:T:0:N:0:O:0	2,33,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10066	A	G	A	3	illumina variant callers disagree	Alarm	False	False	True	102	254	22	20	0.06862745098039216	0.16141732283464566	A:95:C:0:G:7:T:0:N:0:O:0	A:213:C:0:G:41:T:0:N:0:O:0	5,66,2,36	.	.	maybe	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	200	22	20	0.027777777777777776	0.0	A:103:C:0:G:3:T:0:N:0:O:2	A:200:C:0:G:0:T:0:N:0:O:0	3,64,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	135	202	22	20	0.022222222222222223	0.0	A:3:C:0:G:0:T:130:N:0:O:2	A:0:C:0:G:0:T:202:N:0:O:0	0,64,3,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	202	22	20	0.03125	0.0	A:3:C:0:G:92:T:1:N:0:O:0	A:0:C:0:G:202:T:0:N:0:O:0	3,19,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	200	22	20	0.026785714285714284	0.0	A:0:C:108:G:0:T:3:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,80,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	200	22	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	2,48,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10572	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	200	22	20	0.02877697841726619	0.0	A:0:C:133:G:0:T:4:N:0:O:2	A:0:C:200:G:0:T:0:N:0:O:0	0,84,4,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	200	22	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:88:N:0:O:4	A:0:C:0:G:0:T:200:N:0:O:0	0,57,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10778	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	200	22	20	0.025210084033613446	0.0	A:0:C:116:G:0:T:3:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,56,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	200	22	20	0.06451612903225806	0.0	A:0:C:87:G:0:T:6:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,55,6,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	11083	G	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	44	188	22	20	0.5454545454545454	0.9042553191489362	A:1:C:0:G:1:T:24:N:0:O:18	A:0:C:0:G:0:T:170:N:0:O:18	11,31,13,13	33.176	686.8	yes	.	.	.	mixed position	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	294	22	20	0.02040816326530612	0.0	A:0:C:0:G:2:T:96:N:0:O:0	A:0:C:0:G:0:T:294:N:0:O:0	2,66,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	70	294	22	20	0.05714285714285714	0.0	A:0:C:0:G:64:T:4:N:0:O:2	A:0:C:0:G:294:T:0:N:0:O:0	4,35,0,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	11615	T	A	T	16	ignore low frequency variant	Pass	False	False	True	269	384	22	20	0.02973977695167286	0.0625	A:8:C:0:G:0:T:257:N:0:O:4	A:24:C:0:G:0:T:360:N:0:O:0	7,199,1,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	11616	G	T	G	16	ignore low frequency variant	Pass	False	False	True	273	384	22	20	0.03296703296703297	0.0625	A:0:C:0:G:261:T:9:N:0:O:3	A:0:C:0:G:360:T:24:N:0:O:0	7,204,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	200	22	20	0.0625	0.0	A:0:C:105:G:0:T:7:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,91,7,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	198	22	20	0.02857142857142857	0.0	A:67:C:0:G:2:T:1:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	1,45,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	200	22	20	0.017391304347826087	0.0	A:2:C:0:G:87:T:0:N:0:O:26	A:0:C:0:G:200:T:0:N:0:O:0	0,100,2,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12329	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	200	22	20	0.020202020202020204	0.0	A:95:C:0:G:2:T:0:N:0:O:2	A:200:C:0:G:0:T:0:N:0:O:0	2,42,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	200	22	20	0.02127659574468085	0.0	A:92:C:2:G:0:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	2,68,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12527	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	199	22	20	0.03076923076923077	0.0	A:126:C:0:G:4:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	4,69,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12622	A	C	A	16	ignore low frequency variant	Pass	False	False	True	133	199	22	20	0.022556390977443608	0.0	A:124:C:3:G:0:T:0:N:0:O:6	A:199:C:0:G:0:T:0:N:0:O:0	3,88,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	199	22	20	0.041666666666666664	0.0	A:0:C:90:G:0:T:4:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	0,74,4,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	199	22	20	0.027522935779816515	0.0	A:103:C:0:G:3:T:0:N:0:O:3	A:199:C:0:G:0:T:0:N:0:O:0	3,38,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	199	22	20	0.029197080291970802	0.0	A:4:C:0:G:125:T:0:N:0:O:8	A:0:C:0:G:199:T:0:N:0:O:0	4,44,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	199	22	20	0.03508771929824561	0.0	A:106:C:0:G:4:T:0:N:0:O:4	A:199:C:0:G:0:T:0:N:0:O:0	4,25,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	12981	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	199	22	20	0.023809523809523808	0.0	A:3:C:0:G:122:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	3,36,0,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	209	202	22	20	0.023923444976076555	0.0	A:5:C:1:G:0:T:190:N:0:O:13	A:0:C:0:G:0:T:202:N:0:O:0	5,149,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	210	202	22	20	0.01904761904761905	0.0	A:4:C:0:G:194:T:0:N:0:O:12	A:0:C:0:G:202:T:0:N:0:O:0	4,127,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	174	202	22	20	0.022988505747126436	0.0	A:152:C:0:G:4:T:1:N:0:O:17	A:202:C:0:G:0:T:0:N:0:O:0	4,93,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	265	22	20	0.06060606060606061	0.0	A:0:C:61:G:0:T:4:N:0:O:1	A:0:C:265:G:0:T:0:N:0:O:0	0,54,4,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	265	22	20	0.056074766355140186	0.0	A:6:C:0:G:92:T:0:N:0:O:9	A:0:C:0:G:265:T:0:N:0:O:0	6,46,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	265	22	20	0.035398230088495575	0.0	A:109:C:0:G:4:T:0:N:0:O:0	A:265:C:0:G:0:T:0:N:0:O:0	4,52,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	231	22	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:231:G:0:T:0:N:0:O:0	0,52,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	190	22	20	0.025806451612903226	0.0	A:4:C:0:G:127:T:0:N:0:O:24	A:0:C:0:G:190:T:0:N:0:O:0	4,87,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	186	22	20	0.02608695652173913	0.0	A:112:C:0:G:3:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	3,55,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	187	197	22	20	0.0213903743315508	0.0	A:4:C:0:G:173:T:0:N:0:O:10	A:0:C:0:G:197:T:0:N:0:O:0	4,62,0,125	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	198	22	20	0.026845637583892617	0.0	A:4:C:0:G:145:T:0:N:0:O:0	A:0:C:0:G:196:T:1:N:0:O:1	3,35,1,114	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	200	22	20	0.03773584905660377	0.0	A:4:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	4,34,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	14306	A	G	A	16	ignore low frequency variant	Pass	False	False	True	185	199	22	20	0.032432432432432434	0.020100502512562814	A:179:C:0:G:6:T:0:N:0:O:0	A:195:C:0:G:4:T:0:N:0:O:0	2,65,4,120	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	14490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	162	199	22	20	0.024691358024691357	0.0	A:4:C:0:G:158:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	4,45,0,117	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	200	22	20	0.038834951456310676	0.0	A:4:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	4,41,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	200	22	20	0.02586206896551724	0.0	A:111:C:0:G:3:T:0:N:0:O:2	A:200:C:0:G:0:T:0:N:0:O:0	3,66,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	14805	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	200	22	20	0.9927536231884058	1.0	A:0:C:1:G:0:T:137:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	75,76,62,62	275.463	1129.3	yes	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	14856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	200	22	20	0.06716417910447761	0.05	A:124:C:0:G:9:T:0:N:0:O:1	A:190:C:0:G:10:T:0:N:0:O:0	5,77,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	199	22	20	0.024390243902439025	0.0	A:0:C:3:G:0:T:118:N:0:O:2	A:0:C:0:G:0:T:199:N:0:O:0	0,78,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	201	22	20	0.02608695652173913	0.0	A:0:C:0:G:111:T:3:N:0:O:1	A:0:C:0:G:201:T:0:N:0:O:0	0,70,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	199	22	20	0.06666666666666667	0.0	A:0:C:84:G:0:T:6:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	1,54,5,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	199	22	20	0.0380952380952381	0.0	A:0:C:98:G:0:T:4:N:0:O:3	A:0:C:199:G:0:T:0:N:0:O:0	0,67,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	199	22	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:1:C:198:G:0:T:0:N:0:O:0	0,77,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	199	22	20	0.030303030303030304	0.0	A:95:C:1:G:0:T:3:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,58,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	197	22	20	0.030303030303030304	0.0	A:0:C:0:G:95:T:3:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	2,35,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16635	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	255	22	20	0.0375	0.0	A:0:C:0:G:3:T:74:N:0:O:3	A:0:C:0:G:0:T:255:N:0:O:0	0,23,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	255	22	20	0.02564102564102564	0.0	A:0:C:114:G:0:T:3:N:0:O:0	A:0:C:255:G:0:T:0:N:0:O:0	0,64,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	200	22	20	0.045871559633027525	0.0	A:5:C:0:G:101:T:0:N:0:O:3	A:0:C:0:G:200:T:0:N:0:O:0	5,28,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	200	22	20	0.041666666666666664	0.0	A:0:C:0:G:4:T:89:N:0:O:3	A:0:C:3:G:0:T:197:N:0:O:0	0,49,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	177	200	22	20	0.01694915254237288	0.0	A:3:C:0:G:138:T:0:N:0:O:36	A:0:C:0:G:200:T:0:N:0:O:0	0,70,3,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	16842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	200	22	20	0.05	0.05	A:95:C:0:G:5:T:0:N:0:O:0	A:190:C:0:G:10:T:0:N:0:O:0	2,28,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17010	C	A	A	17	accept high frequency variant	Pass	False	True	True	134	200	22	20	0.9850746268656716	1.0	A:132:C:1:G:0:T:0:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	42,43,90,91	279.237	1559.8	yes	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	200	22	20	0.020202020202020204	0.0	A:96:C:2:G:0:T:0:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	2,37,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	199	22	20	0.02631578947368421	0.0	A:0:C:73:G:0:T:2:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,66,2,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	199	22	20	0.03614457831325301	0.0	A:0:C:79:G:0:T:3:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,42,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17159	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	199	22	20	0.02654867256637168	0.0	A:0:C:110:G:0:T:3:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	0,62,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	199	22	20	0.02197802197802198	0.0	A:88:C:0:G:2:T:0:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	2,22,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	199	22	20	0.022727272727272728	0.0	A:2:C:0:G:0:T:84:N:0:O:2	A:0:C:0:G:0:T:199:N:0:O:0	2,22,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17449	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	197	22	20	0.02564102564102564	0.0	A:3:C:0:G:0:T:113:N:0:O:1	A:0:C:0:G:0:T:197:N:0:O:0	3,36,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	197	22	20	0.06716417910447761	0.04568527918781726	A:0:C:124:G:0:T:9:N:0:O:1	A:0:C:188:G:0:T:9:N:0:O:0	2,57,7,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	197	22	20	0.0392156862745098	0.0	A:0:C:96:G:0:T:4:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	0,64,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	197	22	20	0.05223880597014925	0.0	A:7:C:0:G:127:T:0:N:0:O:0	A:0:C:1:G:196:T:0:N:0:O:0	7,51,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	197	22	20	0.030303030303030304	0.0	A:0:C:95:G:0:T:3:N:0:O:1	A:0:C:197:G:0:T:0:N:0:O:0	0,55,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	197	22	20	0.032	0.0	A:0:C:116:G:0:T:4:N:0:O:5	A:0:C:197:G:0:T:0:N:0:O:0	0,59,4,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	131	197	22	20	0.030534351145038167	0.0	A:118:C:0:G:0:T:4:N:0:O:9	A:197:C:0:G:0:T:0:N:0:O:0	0,72,4,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	236	396	22	20	0.0211864406779661	0.0025252525252525255	A:0:C:220:G:0:T:5:N:0:O:11	A:1:C:394:G:0:T:1:N:0:O:0	0,124,5,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	312	22	20	0.07042253521126761	0.0	A:0:C:66:G:0:T:5:N:0:O:0	A:0:C:312:G:0:T:0:N:0:O:0	0,36,5,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	312	22	20	0.02912621359223301	0.0	A:87:C:0:G:0:T:3:N:0:O:13	A:312:C:0:G:0:T:0:N:0:O:0	0,38,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	312	22	20	0.0392156862745098	0.0	A:4:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:312:T:0:N:0:O:0	0,57,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	306	22	20	0.037383177570093455	0.0	A:0:C:101:G:0:T:4:N:0:O:2	A:0:C:306:G:0:T:0:N:0:O:0	0,51,4,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	277	22	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:277:T:0:N:0:O:0	2,14,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	18266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	199	22	20	0.02142857142857143	0.0	A:3:C:0:G:137:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	1,45,2,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	198	22	20	0.03333333333333333	0.0	A:0:C:116:G:0:T:4:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,62,4,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	202	22	20	0.021739130434782608	0.0	A:0:C:0:G:2:T:90:N:0:O:0	A:0:C:0:G:0:T:202:N:0:O:0	0,27,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	18487	A	C	A	16	ignore low frequency variant	Pass	False	False	True	127	257	22	20	0.023622047244094488	0.0	A:124:C:3:G:0:T:0:N:0:O:0	A:257:C:0:G:0:T:0:N:0:O:0	3,55,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	197	22	20	0.07291666666666667	0.0	A:7:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	7,19,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	18735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	197	22	20	0.01818181818181818	0.0	A:45:C:0:G:1:T:0:N:0:O:9	A:197:C:0:G:0:T:0:N:0:O:0	1,26,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	18915	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	197	22	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	1,62,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	200	22	20	0.03225806451612903	0.0	A:4:C:0:G:120:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	4,29,0,95	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	19303	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	199	22	20	0.04477611940298507	0.04020100502512563	A:128:C:0:G:6:T:0:N:0:O:0	A:191:C:0:G:8:T:0:N:0:O:0	4,68,2,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	199	22	20	0.17142857142857143	0.0	A:0:C:57:G:0:T:12:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,49,12,21	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	20489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	200	22	20	0.022727272727272728	0.0	A:2:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	2,57,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	20676	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	200	22	20	0.02564102564102564	0.0	A:149:C:0:G:4:T:0:N:0:O:3	A:200:C:0:G:0:T:0:N:0:O:0	4,78,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	200	22	20	0.027777777777777776	0.005	A:3:C:0:G:103:T:0:N:0:O:2	A:1:C:0:G:199:T:0:N:0:O:0	3,43,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	200	22	20	0.03361344537815126	0.0	A:1:C:107:G:0:T:4:N:0:O:7	A:0:C:200:G:0:T:0:N:0:O:0	3,60,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	200	22	20	0.1276595744680851	0.005	A:0:C:0:G:71:T:12:N:0:O:11	A:0:C:0:G:199:T:1:N:0:O:0	0,68,12,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	21186	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	287	22	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:287:T:0:N:0:O:0	0,61,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	62	287	22	20	0.04838709677419355	0.0	A:3:C:1:G:0:T:35:N:0:O:23	A:0:C:0:G:0:T:287:N:0:O:0	1,43,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	287	22	20	0.020202020202020204	0.0	A:2:C:93:G:0:T:2:N:0:O:2	A:0:C:287:G:0:T:0:N:0:O:0	0,57,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	202	22	20	0.020202020202020204	0.0	A:96:C:0:G:0:T:2:N:0:O:1	A:202:C:0:G:0:T:0:N:0:O:0	2,36,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	202	22	20	0.020202020202020204	0.0	A:96:C:0:G:2:T:0:N:0:O:1	A:202:C:0:G:0:T:0:N:0:O:0	2,34,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	21575	C	T	T	10	mixed variant with conflicting illumina support	Check	False	True	True	81	203	22	20	0.49382716049382713	1.0	A:0:C:2:G:0:T:40:N:0:O:39	A:0:C:0:G:0:T:203:N:0:O:0	5,45,35,36	18.379	1484.7	yes	.	.	.	mixed position	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	199	22	20	0.10112359550561797	0.0	A:0:C:78:G:0:T:9:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	8,27,1,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	22013	A	G	A	16	ignore low frequency variant	Pass	False	False	True	228	397	22	20	0.039473684210526314	0.04030226700251889	A:217:C:0:G:9:T:0:N:0:O:2	A:381:C:0:G:16:T:0:N:0:O:0	5,118,4,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	199	22	20	0.04081632653061224	0.0	A:0:C:0:G:4:T:94:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	4,43,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	200	22	20	0.022727272727272728	0.0	A:3:C:0:G:129:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,29,0,103	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	23129	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	199	22	20	0.03496503496503497	0.0	A:138:C:0:G:5:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	5,69,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	198	22	20	0.020833333333333332	0.0	A:93:C:0:G:2:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	2,34,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	198	22	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	2,35,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	198	22	20	0.09174311926605505	0.0	A:0:C:97:G:0:T:10:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,78,10,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	139	198	22	20	0.05755395683453238	0.0	A:131:C:0:G:0:T:8:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	8,73,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	198	22	20	0.1111111111111111	0.0	A:8:C:0:G:0:T:64:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	8,15,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	198	22	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	2,59,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	198	22	20	0.07142857142857142	0.0	A:6:C:0:G:75:T:2:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	5,19,1,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	198	22	20	0.02531645569620253	0.0	A:2:C:0:G:76:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	2,16,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	197	22	20	0.02531645569620253	0.0	A:0:C:75:G:0:T:2:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	0,61,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	197	22	20	0.034482758620689655	0.0	A:0:C:75:G:0:T:3:N:0:O:9	A:0:C:197:G:0:T:0:N:0:O:0	0,80,3,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	197	22	20	0.031496062992125984	0.0	A:0:C:4:G:0:T:123:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,67,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	197	22	20	0.07216494845360824	0.0	A:7:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	7,32,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	197	22	20	0.043478260869565216	0.0	A:4:C:0:G:82:T:0:N:0:O:6	A:0:C:0:G:197:T:0:N:0:O:0	4,26,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	199	22	20	0.023809523809523808	0.0	A:3:C:120:G:0:T:1:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	3,78,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24492	T	A	T	16	ignore low frequency variant	Pass	False	False	True	170	199	22	20	0.023529411764705882	0.020100502512562814	A:4:C:0:G:0:T:162:N:0:O:4	A:4:C:0:G:0:T:195:N:0:O:0	3,91,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24520	A	G	A	16	ignore low frequency variant	Pass	False	False	True	183	199	22	20	0.04371584699453552	0.020100502512562814	A:173:C:0:G:8:T:0:N:0:O:2	A:195:C:0:G:4:T:0:N:0:O:0	5,114,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	199	22	20	0.03875968992248062	0.0	A:0:C:121:G:0:T:5:N:0:O:3	A:0:C:199:G:0:T:0:N:0:O:0	0,106,5,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	199	22	20	0.02564102564102564	0.0	A:0:C:152:G:0:T:4:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	0,111,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	109	200	22	20	0.027522935779816515	0.0	A:104:C:3:G:0:T:1:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	3,67,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	199	22	20	0.02608695652173913	0.0	A:112:C:0:G:0:T:3:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,55,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25508	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	199	22	20	0.02112676056338028	0.0	A:0:C:138:G:0:T:3:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,78,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25613	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	199	22	20	0.023529411764705882	0.0	A:0:C:82:G:1:T:2:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	1,24,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	146	199	22	20	0.02054794520547945	0.0	A:3:C:132:G:0:T:0:N:0:O:11	A:0:C:199:G:0:T:0:N:0:O:0	3,80,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25642	C	T	C	16	ignore low frequency variant	Pass	False	False	True	256	379	22	20	0.01953125	0.0	A:0:C:240:G:0:T:5:N:0:O:11	A:0:C:379:G:0:T:0:N:0:O:0	1,175,4,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	190	22	20	0.02586206896551724	0.0	A:0:C:99:G:0:T:3:N:0:O:14	A:0:C:190:G:0:T:0:N:0:O:0	1,71,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25796	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	225	22	20	0.023809523809523808	0.0	A:0:C:69:G:0:T:2:N:0:O:13	A:0:C:225:G:0:T:0:N:0:O:0	2,33,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	230	22	20	0.015267175572519083	0.0	A:2:C:92:G:0:T:0:N:0:O:37	A:0:C:225:G:0:T:0:N:0:O:5	2,63,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	222	22	20	0.03529411764705882	0.0	A:78:C:3:G:0:T:0:N:0:O:4	A:222:C:0:G:0:T:0:N:0:O:0	2,51,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	225	22	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:225:G:0:T:0:N:0:O:0	0,76,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25854	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	213	22	20	0.08256880733944955	0.06572769953051644	A:0:C:98:G:0:T:9:N:0:O:2	A:0:C:199:G:0:T:14:N:0:O:0	6,68,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	182	22	20	0.028037383177570093	0.0	A:101:C:0:G:3:T:0:N:0:O:3	A:182:C:0:G:0:T:0:N:0:O:0	3,54,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	177	22	20	0.056818181818181816	0.0	A:82:C:0:G:5:T:0:N:0:O:1	A:177:C:0:G:0:T:0:N:0:O:0	5,43,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	177	22	20	0.034482758620689655	0.0	A:0:C:84:G:0:T:3:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	2,63,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	83	175	22	20	0.024096385542168676	0.0	A:80:C:2:G:0:T:0:N:0:O:1	A:175:C:0:G:0:T:0:N:0:O:0	2,30,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	128	22	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:128:T:0:N:0:O:0	2,44,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	212	332	22	20	0.02830188679245283	0.0	A:206:C:0:G:6:T:0:N:0:O:0	A:332:C:0:G:0:T:0:N:0:O:0	0,154,6,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	25971	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	205	22	20	0.021739130434782608	0.0	A:3:C:0:G:135:T:0:N:0:O:0	A:0:C:0:G:205:T:0:N:0:O:0	3,61,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26144	G	T	T	17	accept high frequency variant	Pass	False	True	True	145	241	22	20	0.993103448275862	1.0	A:0:C:0:G:1:T:144:N:0:O:0	A:0:C:0:G:0:T:241:N:0:O:0	78,79,66,66	270.692	2219.5	yes	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	26233	G	T	G	16	ignore low frequency variant	Pass	False	False	True	280	396	22	20	0.06428571428571428	0.06565656565656566	A:0:C:0:G:256:T:18:N:0:O:6	A:0:C:0:G:370:T:26:N:0:O:0	12,114,6,166	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	199	22	20	0.024793388429752067	0.0	A:0:C:88:G:0:T:3:N:0:O:30	A:0:C:199:G:0:T:0:N:0:O:0	0,70,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	199	22	20	0.09090909090909091	0.1306532663316583	A:0:C:88:G:0:T:9:N:0:O:2	A:0:C:173:G:0:T:26:N:0:O:0	2,46,7,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	200	22	20	0.02564102564102564	0.0	A:150:C:0:G:4:T:0:N:0:O:2	A:200:C:0:G:0:T:0:N:0:O:0	4,103,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	200	22	20	0.023952095808383235	0.0	A:0:C:161:G:0:T:4:N:0:O:2	A:0:C:200:G:0:T:0:N:0:O:0	4,107,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	200	22	20	0.13131313131313133	0.0	A:13:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:200:T:0:N:0:O:0	13,26,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	188	200	22	20	0.031914893617021274	0.0	A:0:C:181:G:0:T:6:N:0:O:1	A:1:C:199:G:0:T:0:N:0:O:0	0,154,6,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	194	22	20	0.021164021164021163	0.0	A:0:C:182:G:0:T:4:N:0:O:3	A:0:C:194:G:0:T:0:N:0:O:0	0,139,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	161	194	22	20	0.031055900621118012	0.0	A:155:C:0:G:5:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	5,104,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	217	22	20	0.04819277108433735	0.0	A:4:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:217:T:0:N:0:O:0	4,22,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	216	22	20	0.05128205128205128	0.0	A:0:C:74:G:0:T:4:N:0:O:0	A:0:C:216:G:0:T:0:N:0:O:0	0,64,4,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	216	22	20	0.049019607843137254	0.0	A:0:C:96:G:0:T:5:N:0:O:1	A:0:C:216:G:0:T:0:N:0:O:0	0,65,5,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27267	T	A	T	16	ignore low frequency variant	Pass	False	False	True	155	198	22	20	0.01935483870967742	0.0	A:3:C:0:G:0:T:139:N:0:O:13	A:0:C:1:G:0:T:197:N:0:O:0	0,79,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	198	22	20	0.02127659574468085	0.0	A:0:C:3:G:0:T:138:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,75,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	198	22	20	0.03076923076923077	0.0	A:0:C:4:G:0:T:126:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,66,4,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	198	22	20	0.022727272727272728	0.0	A:0:C:157:G:0:T:4:N:0:O:15	A:1:C:197:G:0:T:0:N:0:O:0	0,77,4,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	198	22	20	0.047244094488188976	0.0	A:6:C:0:G:119:T:0:N:0:O:2	A:0:C:0:G:198:T:0:N:0:O:0	6,43,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	216	396	22	20	0.023148148148148147	0.0	A:210:C:0:G:0:T:5:N:0:O:1	A:396:C:0:G:0:T:0:N:0:O:0	3,87,2,129	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	224	22	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:224:C:0:G:0:T:0:N:0:O:0	2,60,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	197	22	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	2,44,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	197	22	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	2,45,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	199	22	20	0.02197802197802198	0.0	A:2:C:0:G:0:T:88:N:0:O:1	A:0:C:1:G:0:T:198:N:0:O:0	0,33,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	199	22	20	0.04225352112676056	0.0	A:0:C:68:G:0:T:3:N:0:O:0	A:1:C:198:G:0:T:0:N:0:O:0	0,46,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	199	22	20	0.025	0.0	A:0:C:71:G:0:T:2:N:0:O:7	A:0:C:199:G:0:T:0:N:0:O:0	0,23,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	199	22	20	0.02631578947368421	0.0	A:0:C:110:G:0:T:3:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,43,3,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28725	C	T	C	16	ignore low frequency variant	Pass	False	False	True	277	384	22	20	0.02527075812274368	0.0	A:0:C:263:G:0:T:7:N:0:O:7	A:0:C:384:G:0:T:0:N:0:O:0	0,113,7,164	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	332	22	20	0.029411764705882353	0.0	A:0:C:66:G:0:T:2:N:0:O:0	A:0:C:332:G:0:T:0:N:0:O:0	0,19,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	355	22	20	0.024691358024691357	0.0	A:0:C:2:G:0:T:78:N:0:O:1	A:0:C:0:G:0:T:355:N:0:O:0	0,20,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	345	22	20	0.028169014084507043	0.0	A:0:C:61:G:0:T:2:N:0:O:8	A:0:C:345:G:0:T:0:N:0:O:0	0,18,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	28976	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	215	22	20	0.06870229007633588	0.06046511627906977	A:9:C:0:G:0:T:122:N:0:O:0	A:13:C:0:G:0:T:202:N:0:O:0	3,22,6,109	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29021	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	395	22	20	0.022222222222222223	0.0	A:0:C:3:G:0:T:119:N:0:O:13	A:0:C:0:G:0:T:395:N:0:O:0	0,81,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	395	22	20	0.07339449541284404	0.0	A:0:C:96:G:0:T:8:N:0:O:5	A:0:C:395:G:0:T:0:N:0:O:0	0,80,8,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	200	22	20	0.031578947368421054	0.005	A:3:C:0:G:90:T:0:N:0:O:2	A:1:C:0:G:199:T:0:N:0:O:0	3,5,0,90	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29135	G	C	G	16	ignore low frequency variant	Pass	False	False	True	118	268	22	20	0.03389830508474576	0.048507462686567165	A:0:C:4:G:114:T:0:N:0:O:0	A:0:C:13:G:255:T:0:N:0:O:0	1,51,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29387	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	201	22	20	0.02127659574468085	0.0	A:92:C:2:G:0:T:0:N:0:O:0	A:201:C:0:G:0:T:0:N:0:O:0	2,39,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	201	22	20	0.022988505747126436	0.0	A:85:C:0:G:2:T:0:N:0:O:0	A:201:C:0:G:0:T:0:N:0:O:0	2,35,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	135	201	22	20	0.022222222222222223	0.0	A:131:C:3:G:0:T:0:N:0:O:1	A:200:C:0:G:1:T:0:N:0:O:0	0,67,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29604	T	C	T	16	ignore low frequency variant	Pass	False	False	True	254	50	22	20	0.07086614173228346	0.0	A:0:C:18:G:0:T:235:N:0:O:1	A:0:C:0:G:0:T:50:N:0:O:0	9,128,9,126	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	235	74	22	20	0.02553191489361702	0.0	A:228:C:0:G:6:T:0:N:0:O:1	A:74:C:0:G:0:T:0:N:0:O:0	6,99,0,136	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00022	artic-pipeline	NB06	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00022	artic-pipeline	NB06	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	193	22	20	0.04	0.0	A:0:C:71:G:0:T:3:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,27,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	447	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	329	22	20	0.02586206896551724	0.0	A:0:C:0:G:3:T:111:N:0:O:2	A:0:C:0:G:0:T:329:N:0:O:0	0,40,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	334	22	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:86:N:0:O:2	A:0:C:0:G:0:T:334:N:0:O:0	1,16,1,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	345	22	20	0.02040816326530612	0.0	A:2:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:345:T:0:N:0:O:0	2,30,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	92	345	22	20	0.967391304347826	1.0	A:89:C:0:G:0:T:0:N:0:O:3	A:345:C:0:G:0:T:0:N:0:O:0	23,26,66,66	70.0	2625.9	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	522	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	342	22	20	0.025210084033613446	0.0	A:0:C:3:G:1:T:115:N:0:O:0	A:0:C:0:G:0:T:342:N:0:O:0	0,53,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	198	22	20	0.027777777777777776	0.0	A:3:C:0:G:104:T:0:N:0:O:1	A:0:C:0:G:196:T:2:N:0:O:0	3,67,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	199	22	20	0.024	0.005025125628140704	A:3:C:121:G:0:T:0:N:0:O:1	A:1:C:196:G:0:T:1:N:0:O:1	3,79,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	198	22	20	0.039603960396039604	0.0	A:0:C:92:G:0:T:4:N:0:O:5	A:2:C:196:G:0:T:0:N:0:O:0	2,65,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	198	22	20	0.02	0.0	A:2:C:0:G:91:T:0:N:0:O:7	A:0:C:0:G:197:T:1:N:0:O:0	2,56,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1288	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	388	22	20	0.0273972602739726	0.0	A:0:C:139:G:0:T:4:N:0:O:3	A:0:C:388:G:0:T:0:N:0:O:0	0,76,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	196	22	20	0.022727272727272728	0.0	A:3:C:0:G:126:T:0:N:0:O:3	A:0:C:0:G:196:T:0:N:0:O:0	3,39,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	334	22	20	0.045454545454545456	0.0	A:0:C:104:G:0:T:5:N:0:O:1	A:2:C:332:G:0:T:0:N:0:O:0	0,47,5,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	147	186	22	20	0.02040816326530612	0.0	A:3:C:104:G:0:T:0:N:0:O:40	A:0:C:186:G:0:T:0:N:0:O:0	3,76,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	186	22	20	0.024096385542168676	0.0	A:0:C:2:G:0:T:81:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	0,43,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	186	22	20	0.02	0.0	A:0:C:0:G:98:T:2:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	1,54,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	193	22	20	0.05660377358490566	0.0	A:6:C:0:G:98:T:0:N:0:O:2	A:0:C:0:G:191:T:2:N:0:O:0	6,21,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	219	22	20	0.030927835051546393	0.0	A:3:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:218:T:1:N:0:O:0	2,43,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	196	22	20	0.02097902097902098	0.0	A:0:C:3:G:0:T:137:N:0:O:3	A:0:C:0:G:0:T:196:N:0:O:0	0,110,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	196	22	20	0.024	0.0	A:3:C:0:G:121:T:0:N:0:O:1	A:0:C:0:G:194:T:2:N:0:O:0	3,78,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	196	22	20	0.023076923076923078	0.0	A:0:C:127:G:0:T:3:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,99,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	196	22	20	0.05785123966942149	0.0	A:114:C:0:G:7:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	7,67,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	63	182	22	20	0.047619047619047616	0.0	A:60:C:3:G:0:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	0,20,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	182	22	20	0.026785714285714284	0.0	A:1:C:99:G:0:T:3:N:0:O:9	A:0:C:182:G:0:T:0:N:0:O:0	1,47,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	2914	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	182	22	20	0.019801980198019802	0.0	A:2:C:0:G:97:T:1:N:0:O:1	A:0:C:0:G:182:T:0:N:0:O:0	2,40,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	232	361	22	20	0.9956896551724138	1.0	A:0:C:1:G:0:T:231:N:0:O:0	A:0:C:0:G:0:T:361:N:0:O:0	80,81,151,151	255.849	813.9	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	191	22	20	0.056818181818181816	0.0	A:0:C:5:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,39,5,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	191	22	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	0,39,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	191	22	20	0.03	0.0	A:0:C:94:G:0:T:3:N:0:O:3	A:0:C:191:G:0:T:0:N:0:O:0	0,38,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	191	22	20	0.022222222222222223	0.0	A:132:C:0:G:3:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	3,31,0,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	192	22	20	0.0641025641025641	0.0	A:0:C:72:G:0:T:5:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	0,57,5,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3656	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	192	22	20	0.023809523809523808	0.0	A:0:C:80:G:0:T:2:N:0:O:2	A:0:C:192:G:0:T:0:N:0:O:0	0,59,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	176	22	20	0.03488372093023256	0.0	A:0:C:0:G:3:T:63:N:0:O:20	A:0:C:0:G:0:T:176:N:0:O:0	0,46,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	177	22	20	0.04807692307692308	0.0	A:5:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:177:T:0:N:0:O:0	0,61,5,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	132	177	22	20	0.022727272727272728	0.0	A:3:C:1:G:0:T:122:N:0:O:6	A:0:C:0:G:0:T:177:N:0:O:0	1,59,2,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	393	22	20	0.023952095808383235	0.0	A:0:C:154:G:0:T:4:N:0:O:9	A:1:C:392:G:0:T:0:N:0:O:0	0,75,4,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	204	22	20	0.030303030303030304	0.0	A:121:C:0:G:0:T:4:N:0:O:7	A:204:C:0:G:0:T:0:N:0:O:0	0,76,4,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	4642	G	T	G	16	ignore low frequency variant	Pass	False	False	True	147	203	22	20	0.02040816326530612	0.0	A:0:C:0:G:144:T:3:N:0:O:0	A:0:C:0:G:203:T:0:N:0:O:0	1,83,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	164	183	22	20	0.024390243902439025	0.0	A:0:C:0:G:4:T:152:N:0:O:8	A:0:C:0:G:0:T:183:N:0:O:0	0,97,4,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	183	22	20	0.03333333333333333	0.0	A:0:C:166:G:0:T:6:N:0:O:8	A:1:C:182:G:0:T:0:N:0:O:0	0,106,6,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5138	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	189	22	20	0.02040816326530612	0.0	A:2:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:189:T:0:N:0:O:0	2,24,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	189	22	20	0.0297029702970297	0.005291005291005291	A:0:C:0:G:95:T:3:N:0:O:3	A:1:C:0:G:187:T:1:N:0:O:0	3,39,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5229	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	189	22	20	0.029850746268656716	0.0	A:65:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	0,32,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	188	22	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:188:N:0:O:0	0,68,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	179	22	20	0.023809523809523808	0.0	A:119:C:0:G:3:T:0:N:0:O:4	A:179:C:0:G:0:T:0:N:0:O:0	3,47,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5389	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	179	22	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,56,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	180	22	20	0.024193548387096774	0.0	A:3:C:0:G:119:T:0:N:0:O:2	A:0:C:0:G:179:T:1:N:0:O:0	3,50,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	190	22	20	0.13043478260869565	0.0	A:0:C:60:G:0:T:9:N:0:O:0	A:0:C:190:G:0:T:0:N:0:O:0	0,47,9,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	190	22	20	0.023809523809523808	0.0	A:3:C:0:G:114:T:0:N:0:O:9	A:0:C:0:G:190:T:0:N:0:O:0	3,45,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	130	190	22	20	0.9923076923076923	1.0	A:0:C:0:G:0:T:129:N:0:O:1	A:0:C:0:G:0:T:190:N:0:O:0	58,59,71,71	140.0	1196.2	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	190	22	20	0.07407407407407407	0.0	A:0:C:75:G:0:T:6:N:0:O:0	A:1:C:189:G:0:T:0:N:0:O:0	0,59,6,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	138	22	20	0.043478260869565216	0.007246376811594203	A:0:C:86:G:0:T:4:N:0:O:2	A:0:C:137:G:0:T:1:N:0:O:0	0,54,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	138	22	20	0.06086956521739131	0.0	A:0:C:108:G:0:T:7:N:0:O:0	A:0:C:138:G:0:T:0:N:0:O:0	0,56,7,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	6427	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	138	22	20	0.03	0.0	A:3:C:1:G:0:T:85:N:0:O:11	A:0:C:0:G:0:T:138:N:0:O:0	2,34,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	193	22	20	0.025210084033613446	0.0	A:0:C:112:G:0:T:3:N:0:O:4	A:0:C:193:G:0:T:0:N:0:O:0	0,92,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	195	22	20	0.02247191011235955	0.0	A:2:C:0:G:86:T:1:N:0:O:0	A:0:C:0:G:194:T:1:N:0:O:0	2,33,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	195	22	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:87:N:0:O:1	A:0:C:0:G:0:T:195:N:0:O:0	1,37,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	161	22	20	0.025974025974025976	0.0	A:0:C:0:G:2:T:75:N:0:O:0	A:0:C:0:G:0:T:161:N:0:O:0	1,36,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	177	22	20	0.023529411764705882	0.0	A:0:C:79:G:0:T:2:N:0:O:4	A:1:C:176:G:0:T:0:N:0:O:0	0,59,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	177	22	20	0.14705882352941177	0.0	A:10:C:0:G:57:T:0:N:0:O:1	A:0:C:0:G:176:T:1:N:0:O:0	10,18,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	7492	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	177	22	20	0.02608695652173913	0.005649717514124294	A:0:C:3:G:0:T:111:N:0:O:1	A:0:C:1:G:0:T:176:N:0:O:0	2,61,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	7615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	177	22	20	0.021052631578947368	0.0	A:2:C:0:G:90:T:0:N:0:O:3	A:0:C:0:G:176:T:1:N:0:O:0	0,64,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	193	22	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:193:N:0:O:0	0,45,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	185	22	20	0.02040816326530612	0.0	A:95:C:2:G:0:T:0:N:0:O:1	A:185:C:0:G:0:T:0:N:0:O:0	0,52,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	201	22	20	0.04065040650406504	0.0	A:0:C:5:G:0:T:118:N:0:O:0	A:1:C:0:G:0:T:200:N:0:O:0	0,81,5,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	8715	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	178	22	20	0.020618556701030927	0.0	A:0:C:94:G:0:T:2:N:0:O:1	A:0:C:178:G:0:T:0:N:0:O:0	2,52,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	8718	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	178	22	20	0.029411764705882353	0.0	A:2:C:0:G:66:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	1,56,1,12	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	128	178	22	20	0.984375	1.0	A:0:C:1:G:0:T:126:N:0:O:1	A:0:C:0:G:0:T:178:N:0:O:0	60,60,66,68	274.466	1080.1	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	178	22	20	0.05333333333333334	0.0	A:4:C:0:G:70:T:0:N:0:O:1	A:0:C:0:G:178:T:0:N:0:O:0	4,14,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	9010	G	T	G	16	ignore low frequency variant	Pass	False	False	True	144	167	22	20	0.020833333333333332	0.0	A:0:C:0:G:139:T:3:N:0:O:2	A:0:C:0:G:167:T:0:N:0:O:0	0,59,3,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	9141	G	C	G	16	ignore low frequency variant	Pass	False	False	True	140	167	22	20	0.02142857142857143	0.0	A:0:C:3:G:132:T:0:N:0:O:5	A:0:C:0:G:167:T:0:N:0:O:0	0,51,3,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	193	22	20	0.038834951456310676	0.0	A:4:C:0:G:98:T:1:N:0:O:0	A:0:C:0:G:192:T:0:N:0:O:1	3,43,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	193	22	20	0.05454545454545454	0.0	A:3:C:0:G:52:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	3,19,0,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	193	22	20	0.022988505747126436	0.0	A:1:C:77:G:0:T:2:N:0:O:7	A:0:C:193:G:0:T:0:N:0:O:0	2,35,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	166	22	20	0.03333333333333333	0.0	A:3:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:1	3,28,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	10321	T	A	T	16	ignore low frequency variant	Pass	False	False	True	113	166	22	20	0.017699115044247787	0.0	A:2:C:0:G:0:T:98:N:0:O:13	A:0:C:0:G:0:T:166:N:0:O:0	2,57,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	184	22	20	0.056074766355140186	0.0	A:0:C:99:G:0:T:6:N:0:O:2	A:0:C:184:G:0:T:0:N:0:O:0	0,48,6,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	195	22	20	0.0425531914893617	0.0	A:0:C:90:G:0:T:4:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,62,4,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	10900	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	195	22	20	0.024390243902439025	0.0	A:3:C:0:G:120:T:0:N:0:O:0	A:0:C:0:G:194:T:1:N:0:O:0	3,53,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	194	22	20	0.02631578947368421	0.0	A:0:C:0:G:3:T:104:N:0:O:7	A:0:C:0:G:0:T:194:N:0:O:0	0,60,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	11671	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	196	22	20	0.02564102564102564	0.0	A:0:C:76:G:0:T:2:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	2,32,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	185	22	20	0.03076923076923077	0.0	A:62:C:0:G:2:T:0:N:0:O:1	A:185:C:0:G:0:T:0:N:0:O:0	0,39,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	185	22	20	0.03669724770642202	0.0	A:0:C:79:G:0:T:4:N:0:O:26	A:0:C:185:G:0:T:0:N:0:O:0	0,74,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	192	22	20	0.0425531914893617	0.0	A:4:C:0:G:68:T:0:N:0:O:22	A:0:C:0:G:192:T:0:N:0:O:0	0,71,4,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	192	22	20	0.02	0.0	A:2:C:0:G:92:T:0:N:0:O:6	A:0:C:0:G:192:T:0:N:0:O:0	2,41,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	12478	G	A	A	13	new position validated by illumina	Pass	False	True	True	149	179	22	20	0.9731543624161074	1.0	A:145:C:0:G:1:T:0:N:0:O:3	A:179:C:0:G:0:T:0:N:0:O:0	85,89,60,60	350.0	1141.5	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	179	22	20	0.02830188679245283	0.0	A:0:C:101:G:0:T:3:N:0:O:2	A:1:C:178:G:0:T:0:N:0:O:0	0,80,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	191	22	20	0.041237113402061855	0.0	A:4:C:0:G:90:T:0:N:0:O:3	A:0:C:0:G:188:T:3:N:0:O:0	0,29,4,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	191	22	20	0.04597701149425287	0.0	A:0:C:82:G:0:T:4:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,43,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	188	22	20	0.024793388429752067	0.0	A:3:C:0:G:118:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	3,35,0,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	188	22	20	0.02608695652173913	0.0	A:0:C:106:G:0:T:3:N:0:O:6	A:1:C:187:G:0:T:0:N:0:O:0	0,59,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	189	22	20	0.03496503496503497	0.0	A:125:C:0:G:5:T:0:N:0:O:13	A:188:C:0:G:0:T:0:N:0:O:1	5,45,0,98	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13405	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	194	22	20	0.02857142857142857	0.0	A:0:C:102:G:0:T:3:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,62,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	194	22	20	0.06896551724137931	0.0	A:0:C:53:G:0:T:4:N:0:O:1	A:0:C:194:G:0:T:0:N:0:O:0	0,49,4,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13482	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	194	22	20	0.028985507246376812	0.0	A:67:C:0:G:2:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	0,38,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	194	22	20	0.037383177570093455	0.0	A:4:C:0:G:93:T:0:N:0:O:10	A:0:C:0:G:194:T:0:N:0:O:0	4,41,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13568	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	194	22	20	0.026785714285714284	0.0	A:0:C:109:G:0:T:3:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,61,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	194	22	20	0.0234375	0.0	A:3:C:115:G:0:T:0:N:0:O:10	A:0:C:194:G:0:T:0:N:0:O:0	2,63,1,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	147	22	20	0.04672897196261682	0.0	A:5:C:0:G:100:T:1:N:0:O:1	A:0:C:0:G:144:T:3:N:0:O:0	5,54,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	181	22	20	0.023622047244094488	0.0	A:124:C:0:G:3:T:0:N:0:O:0	A:181:C:0:G:0:T:0:N:0:O:0	3,69,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	181	22	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	2,39,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	14166	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	181	22	20	0.022900763358778626	0.0	A:3:C:0:G:126:T:0:N:0:O:2	A:0:C:0:G:181:T:0:N:0:O:0	3,76,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14217	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	181	22	20	0.0196078431372549	0.0	A:0:C:2:G:0:T:98:N:0:O:2	A:0:C:0:G:0:T:181:N:0:O:0	0,82,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	204	22	20	0.03225806451612903	0.0	A:0:C:105:G:0:T:4:N:0:O:15	A:2:C:202:G:0:T:0:N:0:O:0	0,55,4,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	204	22	20	0.020833333333333332	0.0	A:2:C:93:G:0:T:0:N:0:O:1	A:0:C:204:G:0:T:0:N:0:O:0	0,52,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14540	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	204	22	20	0.022058823529411766	0.0	A:3:C:0:G:124:T:0:N:0:O:9	A:0:C:0:G:204:T:0:N:0:O:0	3,44,0,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	194	22	20	0.05319148936170213	0.0	A:5:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	5,61,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	194	22	20	0.0425531914893617	0.0	A:4:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:192:T:2:N:0:O:0	4,61,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	180	22	20	0.02564102564102564	0.0	A:0:C:113:G:0:T:3:N:0:O:1	A:0:C:180:G:0:T:0:N:0:O:0	0,72,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15011	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	180	22	20	0.0234375	0.0	A:125:C:3:G:0:T:0:N:0:O:0	A:180:C:0:G:0:T:0:N:0:O:0	3,60,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	180	22	20	0.030303030303030304	0.0	A:3:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:180:T:0:N:0:O:0	3,33,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	180	22	20	0.03260869565217391	0.0	A:0:C:3:G:0:T:87:N:0:O:2	A:0:C:0:G:0:T:180:N:0:O:0	0,72,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	370	22	20	0.0213903743315508	0.0	A:0:C:165:G:0:T:4:N:0:O:18	A:4:C:366:G:0:T:0:N:0:O:0	0,161,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	197	22	20	0.029411764705882353	0.0	A:0:C:98:G:0:T:3:N:0:O:1	A:2:C:195:G:0:T:0:N:0:O:0	0,66,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	199	22	20	0.027972027972027972	0.0	A:4:C:0:G:139:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	4,86,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15664	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	199	22	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:1:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	1,59,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	64	197	22	20	0.03125	0.0	A:2:C:0:G:0:T:56:N:0:O:6	A:0:C:0:G:0:T:197:N:0:O:0	1,28,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	197	22	20	0.0945945945945946	0.0	A:0:C:67:G:0:T:7:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,30,7,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	197	22	20	0.03409090909090909	0.0	A:0:C:84:G:0:T:3:N:0:O:1	A:0:C:197:G:0:T:0:N:0:O:0	0,40,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	16179	A	C	A	16	ignore low frequency variant	Pass	False	False	True	228	385	22	20	0.021929824561403508	0.0	A:223:C:5:G:0:T:0:N:0:O:0	A:385:C:0:G:0:T:0:N:0:O:0	5,63,0,165	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	200	22	20	0.029411764705882353	0.0	A:3:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,40,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	16718	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	212	22	20	0.022222222222222223	0.0	A:2:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:212:T:0:N:0:O:0	2,25,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	212	22	20	0.1134020618556701	0.0	A:11:C:0:G:83:T:0:N:0:O:3	A:0:C:0:G:212:T:0:N:0:O:0	11,31,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	16824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	190	22	20	0.021505376344086023	0.0	A:82:C:0:G:2:T:0:N:0:O:9	A:190:C:0:G:0:T:0:N:0:O:0	1,23,1,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	190	22	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	0,46,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	190	22	20	0.0425531914893617	0.0	A:0:C:0:G:4:T:89:N:0:O:1	A:0:C:3:G:0:T:187:N:0:O:0	0,49,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	190	22	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	1,28,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	190	22	20	0.03125	0.0	A:60:C:2:G:0:T:0:N:0:O:2	A:190:C:0:G:0:T:0:N:0:O:0	2,24,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	195	354	22	20	0.020512820512820513	0.002824858757062147	A:189:C:0:G:4:T:0:N:0:O:2	A:353:C:0:G:1:T:0:N:0:O:0	4,71,0,124	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17144	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	177	22	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:177:T:0:N:0:O:0	2,54,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	177	22	20	0.0273972602739726	0.0	A:2:C:0:G:70:T:0:N:0:O:1	A:0:C:0:G:177:T:0:N:0:O:0	2,8,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	177	22	20	0.024096385542168676	0.0	A:77:C:0:G:2:T:0:N:0:O:4	A:177:C:0:G:0:T:0:N:0:O:0	2,16,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	178	22	20	0.025	0.0	A:2:C:0:G:0:T:73:N:0:O:5	A:0:C:0:G:0:T:177:N:0:O:1	2,19,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	171	22	20	0.025	0.0	A:0:C:115:G:0:T:3:N:0:O:2	A:0:C:171:G:0:T:0:N:0:O:0	0,84,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	171	22	20	0.028985507246376812	0.0	A:4:C:0:G:134:T:0:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	4,60,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	171	22	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	2,59,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	171	22	20	0.06504065040650407	0.0	A:0:C:115:G:0:T:8:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,76,8,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	171	22	20	0.02142857142857143	0.0	A:0:C:132:G:0:T:3:N:0:O:5	A:0:C:171:G:0:T:0:N:0:O:0	0,77,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	249	355	22	20	0.060240963855421686	0.0	A:0:C:224:G:0:T:15:N:0:O:10	A:2:C:353:G:0:T:0:N:0:O:0	0,135,15,114	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	187	22	20	0.07246376811594203	0.0	A:0:C:64:G:0:T:5:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,37,5,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	187	22	20	0.034782608695652174	0.0	A:100:C:0:G:0:T:4:N:0:O:11	A:187:C:0:G:0:T:0:N:0:O:0	0,38,4,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	187	22	20	0.037383177570093455	0.0	A:4:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:186:T:1:N:0:O:0	0,51,4,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	194	22	20	0.027777777777777776	0.0	A:0:C:174:G:0:T:5:N:0:O:1	A:0:C:194:G:0:T:0:N:0:O:0	0,92,5,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	174	197	22	20	0.034482758620689655	0.0	A:0:C:167:G:0:T:6:N:0:O:1	A:0:C:197:G:0:T:0:N:0:O:0	0,95,6,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	18516	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	214	22	20	0.02142857142857143	0.0	A:3:C:0:G:136:T:0:N:0:O:1	A:0:C:0:G:213:T:1:N:0:O:0	0,95,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	190	22	20	0.031914893617021274	0.0	A:90:C:0:G:3:T:0:N:0:O:1	A:190:C:0:G:0:T:0:N:0:O:0	3,42,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	190	22	20	0.028846153846153848	0.0	A:3:C:0:G:99:T:0:N:0:O:2	A:0:C:0:G:187:T:3:N:0:O:0	3,43,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	117	189	22	20	0.9743589743589743	1.0	A:0:C:114:G:0:T:3:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	67,70,47,47	272.247	1550.3	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	19071	T	C	T	16	ignore low frequency variant	Pass	False	False	True	190	191	22	20	0.021052631578947368	0.0	A:0:C:4:G:0:T:184:N:0:O:2	A:0:C:0:G:0:T:191:N:0:O:0	0,104,4,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	191	22	20	0.03680981595092025	0.0	A:6:C:0:G:151:T:0:N:0:O:6	A:0:C:0:G:189:T:2:N:0:O:0	6,48,0,115	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	214	22	20	0.023622047244094488	0.0	A:0:C:124:G:0:T:3:N:0:O:0	A:0:C:214:G:0:T:0:N:0:O:0	0,56,3,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	192	22	20	0.04285714285714286	0.0	A:0:C:67:G:0:T:3:N:0:O:0	A:1:C:191:G:0:T:0:N:0:O:0	0,46,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	19488	C	T	T	7	mixed illumina variant	Check	False	True	True	113	190	22	20	0.7522123893805309	0.7052631578947368	A:0:C:28:G:0:T:85:N:0:O:0	A:0:C:56:G:0:T:134:N:0:O:0	34,49,51,64	17.576	740.8	mixed	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	177	157	22	20	0.01694915254237288	0.0	A:3:C:0:G:0:T:134:N:0:O:40	A:0:C:0:G:0:T:157:N:0:O:0	0,51,3,126	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	157	22	20	0.030612244897959183	0.0	A:95:C:0:G:0:T:3:N:0:O:0	A:157:C:0:G:0:T:0:N:0:O:0	0,44,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	277	22	20	0.042105263157894736	0.0	A:0:C:91:G:0:T:4:N:0:O:0	A:6:C:271:G:0:T:0:N:0:O:0	0,42,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	20940	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	180	22	20	0.02	0.0	A:0:C:0:G:97:T:2:N:0:O:1	A:0:C:0:G:180:T:0:N:0:O:0	2,50,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	180	22	20	0.0603448275862069	0.0	A:7:C:0:G:108:T:0:N:0:O:1	A:0:C:0:G:180:T:0:N:0:O:0	7,45,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	144	22	20	0.16304347826086957	0.0	A:0:C:0:G:66:T:15:N:0:O:11	A:0:C:0:G:144:T:0:N:0:O:0	0,62,15,30	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21231	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	282	22	20	0.02654867256637168	0.0	A:110:C:0:G:3:T:0:N:0:O:0	A:282:C:0:G:0:T:0:N:0:O:0	3,33,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	57	216	22	20	0.017543859649122806	0.0	A:0:C:1:G:0:T:39:N:0:O:17	A:0:C:0:G:0:T:216:N:0:O:0	0,32,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	191	22	20	0.022988505747126436	0.0	A:0:C:84:G:0:T:2:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,54,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	190	22	20	0.05263157894736842	0.0	A:90:C:0:G:5:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	5,19,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	191	22	20	0.04201680672268908	0.0	A:5:C:0:G:113:T:0:N:0:O:1	A:0:C:0:G:191:T:0:N:0:O:0	5,43,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	168	22	20	0.061855670103092786	0.0	A:0:C:83:G:0:T:6:N:0:O:8	A:0:C:168:G:0:T:0:N:0:O:0	5,35,1,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	21891	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	168	22	20	0.022058823529411766	0.0	A:3:C:0:G:0:T:133:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	0,83,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	157	196	22	20	0.050955414012738856	0.0	A:0:C:0:G:8:T:149:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	7,91,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	227	202	22	20	0.030837004405286344	0.0	A:0:C:7:G:0:T:219:N:0:O:1	A:0:C:0:G:0:T:202:N:0:O:0	1,119,6,108	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	208	173	22	20	0.02403846153846154	0.0	A:5:C:0:G:203:T:0:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	5,39,0,169	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	247	185	22	20	0.016194331983805668	0.0	A:0:C:196:G:0:T:4:N:0:O:47	A:1:C:184:G:0:T:0:N:0:O:0	1,136,3,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23299	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	189	22	20	0.02631578947368421	0.0	A:111:C:0:G:0:T:3:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	3,60,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	197	22	20	0.018691588785046728	0.0	A:2:C:0:G:93:T:0:N:0:O:12	A:0:C:0:G:195:T:1:N:0:O:1	2,40,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	186	22	20	0.18181818181818182	0.0	A:0:C:90:G:0:T:20:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,71,20,39	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	186	22	20	0.05511811023622047	0.0	A:0:C:7:G:0:T:120:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	0,72,7,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	152	186	22	20	0.02631578947368421	0.0	A:148:C:0:G:0:T:4:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	4,66,0,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	185	22	20	0.04597701149425287	0.0	A:4:C:0:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	4,14,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	186	22	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:89:N:0:O:3	A:0:C:0:G:1:T:185:N:0:O:0	1,12,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	186	22	20	1.0	1.0	A:0:C:0:G:0:T:138:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	60,60,78,78	210.0	722.2	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	186	22	20	0.024193548387096774	0.0	A:3:C:0:G:119:T:1:N:0:O:1	A:0:C:0:G:184:T:2:N:0:O:0	3,37,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	186	22	20	0.05	0.0	A:0:C:76:G:0:T:4:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,60,4,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	186	22	20	0.035398230088495575	0.0	A:0:C:109:G:0:T:4:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,60,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	178	22	20	0.05555555555555555	0.0	A:6:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:176:T:2:N:0:O:0	6,23,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	178	22	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	2,10,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24661	A	G	A	16	ignore low frequency variant	Pass	False	False	True	180	196	22	20	0.022222222222222223	0.0	A:176:C:0:G:4:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	4,70,0,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	196	22	20	0.036036036036036036	0.00510204081632653	A:0:C:101:G:0:T:4:N:0:O:6	A:1:C:194:G:0:T:1:N:0:O:0	0,102,4,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	196	22	20	0.02040816326530612	0.0	A:0:C:92:G:0:T:2:N:0:O:4	A:1:C:195:G:0:T:0:N:0:O:0	0,92,2,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	183	22	20	0.02112676056338028	0.0	A:3:C:0:G:116:T:0:N:0:O:23	A:0:C:0:G:182:T:0:N:0:O:1	3,112,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	181	22	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:181:C:0:G:0:T:0:N:0:O:0	2,71,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	182	22	20	0.024691358024691357	0.0	A:2:C:0:G:78:T:0:N:0:O:1	A:0:C:0:G:182:T:0:N:0:O:0	1,59,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	65	182	22	20	0.046153846153846156	0.0	A:0:C:3:G:0:T:62:N:0:O:0	A:0:C:0:G:0:T:182:N:0:O:0	2,47,1,18	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	189	22	20	0.030927835051546393	0.0	A:93:C:3:G:0:T:0:N:0:O:1	A:189:C:0:G:0:T:0:N:0:O:0	3,43,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	193	22	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:3:C:190:G:0:T:0:N:0:O:0	0,45,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	193	22	20	0.058333333333333334	0.10362694300518134	A:0:C:0:G:109:T:7:N:0:O:4	A:0:C:0:G:173:T:20:N:0:O:0	3,36,4,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25515	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	193	22	20	0.02127659574468085	0.0	A:0:C:91:G:0:T:2:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	1,39,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	184	22	20	0.03125	0.0	A:3:C:0:G:90:T:0:N:0:O:3	A:0:C:0:G:184:T:0:N:0:O:0	3,31,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25766	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	184	22	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:184:N:0:O:0	0,51,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	185	22	20	0.023529411764705882	0.0	A:83:C:2:G:0:T:0:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:1	1,40,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	184	22	20	0.030927835051546393	0.0	A:0:C:94:G:0:T:3:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,61,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	184	22	20	0.02564102564102564	0.0	A:0:C:2:G:0:T:75:N:0:O:1	A:0:C:0:G:0:T:184:N:0:O:0	0,51,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	184	22	20	0.02564102564102564	0.0	A:113:C:0:G:3:T:0:N:0:O:1	A:184:C:0:G:0:T:0:N:0:O:0	3,49,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	184	22	20	0.030612244897959183	0.0	A:92:C:0:G:3:T:0:N:0:O:3	A:184:C:0:G:0:T:0:N:0:O:0	3,28,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	201	372	22	20	0.03482587064676617	0.0	A:193:C:0:G:7:T:0:N:0:O:1	A:372:C:0:G:0:T:0:N:0:O:0	0,144,7,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	190	22	20	0.028846153846153848	0.0	A:0:C:100:G:0:T:3:N:0:O:1	A:1:C:189:G:0:T:0:N:0:O:0	0,69,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	190	22	20	0.02247191011235955	0.0	A:2:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:188:T:2:N:0:O:0	2,27,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	202	379	22	20	0.04950495049504951	0.0	A:0:C:191:G:0:T:10:N:0:O:1	A:3:C:376:G:0:T:0:N:0:O:0	0,159,10,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	234	382	22	20	0.042735042735042736	0.0	A:0:C:10:G:0:T:223:N:0:O:1	A:0:C:0:G:0:T:382:N:0:O:0	0,164,10,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	197	22	20	0.027777777777777776	0.0	A:104:C:0:G:3:T:0:N:0:O:1	A:197:C:0:G:0:T:0:N:0:O:0	3,52,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	198	22	20	0.03225806451612903	0.0	A:0:C:3:G:0:T:88:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:0	0,41,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	198	22	20	0.02702702702702703	0.0	A:0:C:3:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,73,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	198	22	20	0.10256410256410256	0.0	A:8:C:0:G:70:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	8,12,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	128	198	22	20	0.9921875	0.98989898989899	A:0:C:127:G:0:T:0:N:0:O:1	A:2:C:196:G:0:T:0:N:0:O:0	76,77,51,51	280.0	1460.6	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	198	22	20	0.028846153846153848	0.0	A:0:C:99:G:0:T:3:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,75,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	179	22	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:179:C:0:G:0:T:0:N:0:O:0	2,29,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	179	22	20	0.047619047619047616	0.0	A:4:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	4,14,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	179	22	20	0.06172839506172839	0.0	A:0:C:75:G:0:T:5:N:0:O:1	A:0:C:179:G:0:T:0:N:0:O:0	0,50,5,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	157	22	20	0.027522935779816515	0.0	A:3:C:0:G:104:T:0:N:0:O:2	A:0:C:0:G:156:T:1:N:0:O:0	3,21,0,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27512	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	199	22	20	0.025210084033613446	0.0	A:115:C:0:G:3:T:0:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	3,61,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27540	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	199	22	20	0.042735042735042736	0.0	A:111:C:0:G:5:T:0:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	5,60,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27792	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	196	22	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	1,51,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	27889	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	180	22	20	0.020618556701030927	0.0	A:0:C:93:G:0:T:2:N:0:O:2	A:0:C:180:G:0:T:0:N:0:O:0	0,39,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	125	179	22	20	0.992	1.0	A:0:C:124:G:0:T:0:N:0:O:1	A:0:C:179:G:0:T:0:N:0:O:0	74,75,50,50	70.0	1756.1	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	254	341	22	20	0.9881889763779528	0.9824046920821115	A:0:C:251:G:0:T:2:N:0:O:1	A:6:C:335:G:0:T:0:N:0:O:0	143,144,108,110	198.823	1453.0	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	175	22	20	0.018867924528301886	0.0	A:0:C:2:G:0:T:97:N:0:O:7	A:0:C:0:G:0:T:175:N:0:O:0	0,62,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	178	22	20	0.041237113402061855	0.0	A:92:C:1:G:4:T:0:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	4,49,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	312	22	20	0.041666666666666664	0.0	A:0:C:45:G:0:T:2:N:0:O:1	A:2:C:310:G:0:T:0:N:0:O:0	0,12,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	313	22	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:99:N:0:O:0	A:0:C:0:G:0:T:313:N:0:O:0	0,17,3,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	123	313	22	20	0.991869918699187	1.0	A:0:C:0:G:122:T:0:N:0:O:1	A:0:C:0:G:313:T:0:N:0:O:0	18,19,104,104	51.994	1604.4	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	28923	C	T	N	18	ambiguous base in consensus	Check	False	False	False	89	313	22	20	0.06741573033707865	0.0	A:0:C:83:G:0:T:6:N:0:O:0	A:0:C:313:G:0:T:0:N:0:O:0	0,16,6,73	.	48.0	no	.	.	mismatch(n+s)	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	311	22	20	0.02531645569620253	0.0	A:0:C:74:G:0:T:2:N:0:O:3	A:0:C:311:G:0:T:0:N:0:O:0	0,10,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	311	22	20	0.03488372093023256	0.0	A:0:C:3:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:311:N:0:O:0	0,11,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	376	22	20	0.0784313725490196	0.0	A:0:C:92:G:0:T:8:N:0:O:2	A:1:C:375:G:0:T:0:N:0:O:0	0,86,8,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	29199	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	201	22	20	0.024096385542168676	0.0	A:0:C:81:G:0:T:2:N:0:O:0	A:0:C:201:G:0:T:0:N:0:O:0	2,47,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	94	201	22	20	0.031914893617021274	0.0	A:0:C:3:G:91:T:0:N:0:O:0	A:0:C:0:G:200:T:1:N:0:O:0	3,47,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	195	22	20	0.02127659574468085	0.0	A:90:C:0:G:2:T:0:N:0:O:2	A:195:C:0:G:0:T:0:N:0:O:0	0,40,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	196	22	20	0.041666666666666664	0.0	A:92:C:0:G:4:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	3,30,1,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	196	22	20	0.02877697841726619	0.0	A:4:C:0:G:134:T:0:N:0:O:1	A:0:C:0:G:196:T:0:N:0:O:0	3,51,1,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00031	artic-pipeline	NB02	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	107	194	22	20	0.8691588785046729	1.0	A:0:C:0:G:93:T:1:N:0:O:13	A:0:C:0:G:194:T:0:N:0:O:0	25,39,68,68	245.184	1018.2	yes	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	299	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	6696	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	157	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00031	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	139	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	159	22	20	0.03333333333333333	0.0	A:0:C:58:G:0:T:2:N:0:O:0	A:0:C:159:G:0:T:0:N:0:O:0	0,35,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	193	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	164	22	20	0.020833333333333332	0.0	A:0:C:47:G:0:T:1:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	0,29,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	160	22	20	0.05714285714285714	0.0	A:2:C:0:G:30:T:0:N:0:O:3	A:0:C:0:G:160:T:0:N:0:O:0	2,10,0,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	341	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	158	22	20	0.020833333333333332	0.0	A:1:C:0:G:45:T:0:N:0:O:2	A:0:C:0:G:158:T:0:N:0:O:0	1,27,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	320	22	20	0.022857142857142857	0.0	A:0:C:171:G:0:T:4:N:0:O:0	A:0:C:320:G:0:T:0:N:0:O:0	0,129,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	608	C	A	C	16	ignore low frequency variant	Pass	False	False	True	148	176	22	20	0.02027027027027027	0.0	A:3:C:143:G:0:T:0:N:0:O:2	A:0:C:176:G:0:T:0:N:0:O:0	0,72,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	162	22	20	0.03529411764705882	0.006172839506172839	A:0:C:82:G:0:T:3:N:0:O:0	A:1:C:160:G:0:T:1:N:0:O:0	3,57,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	162	22	20	0.06315789473684211	0.0	A:0:C:84:G:0:T:6:N:0:O:5	A:1:C:161:G:0:T:0:N:0:O:0	0,47,6,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	162	22	20	0.05	0.0	A:4:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:162:T:0:N:0:O:0	4,26,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	249	307	22	20	0.0321285140562249	0.0	A:8:C:0:G:239:T:0:N:0:O:2	A:0:C:0:G:307:T:0:N:0:O:0	7,75,1,174	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	209	22	20	0.032520325203252036	0.0	A:0:C:117:G:0:T:4:N:0:O:2	A:0:C:209:G:0:T:0:N:0:O:0	0,36,4,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	203	22	20	0.031496062992125984	0.0	A:4:C:0:G:122:T:0:N:0:O:1	A:0:C:0:G:203:T:0:N:0:O:0	1,31,3,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1618	T	G	T	16	ignore low frequency variant	Pass	False	False	True	259	306	22	20	0.023166023166023165	0.0	A:0:C:0:G:6:T:246:N:0:O:7	A:0:C:0:G:0:T:306:N:0:O:0	0,100,6,159	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	146	22	20	0.03260869565217391	0.0	A:3:C:0:G:85:T:0:N:0:O:4	A:0:C:0:G:145:T:1:N:0:O:0	3,14,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	146	22	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:88:N:0:O:4	A:0:C:0:G:0:T:146:N:0:O:0	0,50,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	167	22	20	0.021739130434782608	0.0	A:89:C:2:G:0:T:0:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	0,60,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	168	22	20	0.07692307692307693	0.0	A:7:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:167:T:1:N:0:O:0	7,25,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	188	22	20	0.02608695652173913	0.0	A:112:C:3:G:0:T:0:N:0:O:0	A:188:C:0:G:0:T:0:N:0:O:0	3,47,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2480	A	G	G	17	accept high frequency variant	Pass	False	True	True	92	188	22	20	0.8586956521739131	1.0	A:0:C:0:G:79:T:0:N:0:O:13	A:0:C:0:G:188:T:0:N:0:O:0	38,51,41,41	342.453	1326.9	yes	.	.	.	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	2558	C	T	T	17	accept high frequency variant	Pass	False	True	True	319	340	22	20	0.9937304075235109	1.0	A:0:C:2:G:0:T:317:N:0:O:0	A:0:C:0:G:0:T:340:N:0:O:0	177,179,140,140	346.227	1652.8	yes	.	.	.	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	2625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	181	22	20	0.033112582781456956	0.0	A:5:C:0:G:146:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	5,83,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	2626	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	181	22	20	0.026143790849673203	0.0	A:4:C:0:G:148:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	4,85,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	157	181	22	20	0.03821656050955414	0.0	A:150:C:6:G:0:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	6,98,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	176	181	22	20	0.022727272727272728	0.0	A:4:C:0:G:166:T:0:N:0:O:6	A:0:C:0:G:181:T:0:N:0:O:0	4,110,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	181	22	20	0.02857142857142857	0.0	A:0:C:135:G:0:T:4:N:0:O:1	A:0:C:181:G:0:T:0:N:0:O:0	0,120,4,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2886	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	132	22	20	0.02459016393442623	0.0	A:0:C:3:G:0:T:118:N:0:O:1	A:0:C:0:G:0:T:132:N:0:O:0	0,58,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	68	132	22	20	0.04411764705882353	0.0	A:65:C:3:G:0:T:0:N:0:O:0	A:132:C:0:G:0:T:0:N:0:O:0	0,26,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	132	22	20	0.02459016393442623	0.0	A:1:C:112:G:0:T:3:N:0:O:6	A:0:C:132:G:0:T:0:N:0:O:0	0,41,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	132	22	20	0.02459016393442623	0.0	A:0:C:3:G:0:T:118:N:0:O:1	A:0:C:0:G:0:T:132:N:0:O:0	3,52,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	132	22	20	0.037037037037037035	0.0	A:0:C:4:G:0:T:101:N:0:O:3	A:0:C:0:G:0:T:132:N:0:O:0	0,57,4,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	132	22	20	0.029411764705882353	0.007575757575757576	A:4:C:132:G:0:T:0:N:0:O:0	A:1:C:131:G:0:T:0:N:0:O:0	0,58,4,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	132	22	20	0.02608695652173913	0.0	A:0:C:3:G:0:T:112:N:0:O:0	A:0:C:0:G:0:T:132:N:0:O:0	0,57,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	132	22	20	0.02608695652173913	0.007575757575757576	A:0:C:0:G:101:T:3:N:0:O:11	A:0:C:0:G:131:T:1:N:0:O:0	0,67,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	165	22	20	0.06796116504854369	0.0	A:0:C:7:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	0,66,7,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	165	22	20	0.030303030303030304	0.0	A:0:C:95:G:0:T:3:N:0:O:1	A:0:C:165:G:0:T:0:N:0:O:0	0,51,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	165	22	20	0.020202020202020204	0.0	A:0:C:94:G:0:T:2:N:0:O:3	A:0:C:165:G:0:T:0:N:0:O:0	0,46,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	165	22	20	0.07368421052631578	0.0	A:0:C:87:G:0:T:7:N:0:O:1	A:0:C:165:G:0:T:0:N:0:O:0	0,71,7,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	119	22	20	0.04504504504504504	0.0	A:5:C:1:G:102:T:0:N:0:O:3	A:0:C:0:G:119:T:0:N:0:O:0	0,78,5,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	119	22	20	0.031914893617021274	0.0	A:0:C:91:G:0:T:3:N:0:O:0	A:0:C:119:G:0:T:0:N:0:O:0	0,79,3,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	259	258	22	20	0.03088803088803089	0.0	A:249:C:0:G:8:T:0:N:0:O:2	A:258:C:0:G:0:T:0:N:0:O:0	8,114,0,145	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	300	258	22	20	0.03333333333333333	0.0	A:10:C:0:G:260:T:0:N:0:O:30	A:0:C:0:G:258:T:0:N:0:O:0	9,153,1,147	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	139	22	20	0.020618556701030927	0.0	A:94:C:0:G:2:T:0:N:0:O:1	A:139:C:0:G:0:T:0:N:0:O:0	2,31,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	139	22	20	0.031578947368421054	0.0	A:0:C:91:G:0:T:3:N:0:O:1	A:0:C:139:G:0:T:0:N:0:O:0	0,44,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	183	22	20	0.022058823529411766	0.0	A:0:C:3:G:0:T:133:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,85,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	183	22	20	0.03773584905660377	0.0	A:4:C:0:G:99:T:0:N:0:O:3	A:0:C:0:G:183:T:0:N:0:O:0	4,45,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	183	22	20	0.02459016393442623	0.0	A:3:C:0:G:115:T:0:N:0:O:4	A:0:C:0:G:183:T:0:N:0:O:0	3,61,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	140	22	20	0.023622047244094488	0.0	A:0:C:121:G:0:T:3:N:0:O:3	A:0:C:140:G:0:T:0:N:0:O:0	0,104,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	151	140	22	20	0.019867549668874173	0.0	A:0:C:0:G:3:T:146:N:0:O:2	A:0:C:1:G:0:T:139:N:0:O:0	0,96,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	185	140	22	20	0.021621621621621623	0.0	A:0:C:160:G:0:T:4:N:0:O:21	A:0:C:140:G:0:T:0:N:0:O:0	1,105,3,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	139	22	20	0.021897810218978103	0.0	A:128:C:0:G:3:T:0:N:0:O:6	A:139:C:0:G:0:T:0:N:0:O:0	3,83,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	5441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	139	22	20	0.033707865168539325	0.0	A:3:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:139:T:0:N:0:O:0	3,43,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	5442	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	139	22	20	0.021739130434782608	0.0	A:2:C:0:G:88:T:0:N:0:O:2	A:0:C:0:G:139:T:0:N:0:O:0	2,42,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	5624	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	169	22	20	0.02	0.0	A:0:C:0:G:2:T:97:N:0:O:1	A:0:C:0:G:0:T:169:N:0:O:0	0,39,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	169	22	20	0.07792207792207792	0.0	A:0:C:71:G:0:T:6:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,62,6,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	5812	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	168	22	20	0.02040816326530612	0.005952380952380952	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:167:G:0:T:1:N:0:O:0	0,31,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	168	22	20	0.02459016393442623	0.0	A:0:C:115:G:0:T:3:N:0:O:4	A:0:C:168:G:0:T:0:N:0:O:0	0,75,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	168	22	20	0.0761904761904762	0.0	A:0:C:95:G:0:T:8:N:0:O:2	A:0:C:168:G:0:T:0:N:0:O:0	1,71,7,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	184	22	20	0.02158273381294964	0.0	A:0:C:129:G:0:T:3:N:0:O:7	A:0:C:184:G:0:T:0:N:0:O:0	0,64,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	184	22	20	0.028037383177570093	0.0	A:3:C:0:G:103:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	3,37,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	6890	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	183	22	20	0.025423728813559324	0.0	A:3:C:0:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	2,54,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	183	22	20	0.023809523809523808	0.0	A:79:C:0:G:0:T:2:N:0:O:3	A:183:C:0:G:0:T:0:N:0:O:0	0,59,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	102	22	20	0.03260869565217391	0.0	A:0:C:86:G:0:T:3:N:0:O:3	A:0:C:102:G:0:T:0:N:0:O:0	0,69,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	102	22	20	0.02702702702702703	0.0	A:0:C:106:G:0:T:3:N:0:O:2	A:0:C:102:G:0:T:0:N:0:O:0	3,60,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	103	22	20	0.017094017094017096	0.0	A:0:C:92:G:0:T:2:N:0:O:23	A:0:C:102:G:0:T:0:N:0:O:1	0,98,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	194	22	20	0.02631578947368421	0.0	A:111:C:0:G:3:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	3,33,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	195	22	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:99:N:0:O:2	A:0:C:0:G:0:T:195:N:0:O:0	0,58,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	130	195	22	20	0.023076923076923078	0.0	A:127:C:0:G:0:T:3:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	3,52,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	208	22	20	0.022727272727272728	0.0	A:86:C:0:G:2:T:0:N:0:O:0	A:208:C:0:G:0:T:0:N:0:O:0	2,38,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	208	22	20	0.036036036036036036	0.0	A:4:C:0:G:105:T:0:N:0:O:2	A:0:C:0:G:208:T:0:N:0:O:0	4,43,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	207	22	20	0.039603960396039604	0.0	A:0:C:4:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:207:N:0:O:0	0,67,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	8887	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	163	22	20	0.025	0.006134969325153374	A:76:C:0:G:0:T:2:N:0:O:2	A:162:C:0:G:0:T:1:N:0:O:0	2,16,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	163	22	20	0.11290322580645161	0.006134969325153374	A:7:C:0:G:55:T:0:N:0:O:0	A:1:C:0:G:162:T:0:N:0:O:0	7,8,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	159	22	20	0.05737704918032787	0.0	A:0:C:0:G:114:T:7:N:0:O:1	A:0:C:0:G:159:T:0:N:0:O:0	0,49,7,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	122	160	22	20	0.02459016393442623	0.0	A:3:C:0:G:0:T:119:N:0:O:0	A:0:C:0:G:0:T:160:N:0:O:0	0,47,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	9584	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	79	22	20	0.024793388429752067	0.0	A:3:C:0:G:112:T:0:N:0:O:6	A:0:C:0:G:79:T:0:N:0:O:0	3,77,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	9587	A	T	A	16	ignore low frequency variant	Pass	False	False	True	77	79	22	20	0.03896103896103896	0.0	A:72:C:1:G:0:T:3:N:0:O:1	A:79:C:0:G:0:T:0:N:0:O:0	3,30,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	155	22	20	0.05454545454545454	0.0	A:3:C:0:G:52:T:0:N:0:O:0	A:0:C:0:G:155:T:0:N:0:O:0	3,16,0,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	156	22	20	0.0375	0.0	A:0:C:69:G:0:T:3:N:0:O:8	A:0:C:155:G:0:T:0:N:0:O:1	3,33,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	95	22	20	0.03225806451612903	0.0	A:3:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:95:T:0:N:0:O:0	3,18,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	125	22	20	0.049019607843137254	0.0	A:0:C:95:G:0:T:5:N:0:O:2	A:0:C:125:G:0:T:0:N:0:O:0	0,52,5,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	125	22	20	0.02631578947368421	0.0	A:109:C:0:G:3:T:0:N:0:O:2	A:124:C:0:G:0:T:1:N:0:O:0	3,30,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	163	22	20	0.019230769230769232	0.0	A:0:C:2:G:0:T:93:N:0:O:9	A:0:C:0:G:0:T:163:N:0:O:0	0,67,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	163	22	20	0.049019607843137254	0.0	A:0:C:97:G:0:T:5:N:0:O:0	A:0:C:163:G:0:T:0:N:0:O:0	0,58,5,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	11083	G	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	57	147	22	20	0.5789473684210527	0.8163265306122449	A:0:C:0:G:1:T:33:N:0:O:23	A:0:C:0:G:0:T:120:N:0:O:27	14,38,19,19	33.434	712.8	yes	.	.	.	mixed position	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	156	22	20	0.02040816326530612	0.0	A:0:C:0:G:2:T:95:N:0:O:1	A:0:C:0:G:0:T:156:N:0:O:0	2,68,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	58	157	22	20	0.05172413793103448	0.0	A:0:C:0:G:55:T:3:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	3,25,0,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	11480	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	95	22	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:95:N:0:O:1	A:0:C:0:G:0:T:95:N:0:O:0	0,56,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	162	22	20	0.04819277108433735	0.0	A:0:C:78:G:0:T:4:N:0:O:1	A:0:C:162:G:0:T:0:N:0:O:0	0,69,4,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	11733	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	162	22	20	0.0273972602739726	0.0	A:2:C:0:G:0:T:67:N:0:O:4	A:0:C:0:G:0:T:162:N:0:O:0	2,40,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	162	22	20	0.020618556701030927	0.0	A:94:C:0:G:0:T:2:N:0:O:1	A:162:C:0:G:0:T:0:N:0:O:0	2,63,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	139	22	20	0.03278688524590164	0.0	A:4:C:0:G:91:T:0:N:0:O:27	A:0:C:0:G:139:T:0:N:0:O:0	0,97,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	139	22	20	0.025	0.0	A:0:C:117:G:0:T:3:N:0:O:0	A:0:C:139:G:0:T:0:N:0:O:0	3,62,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	140	22	20	0.02459016393442623	0.0	A:0:C:116:G:0:T:3:N:0:O:3	A:1:C:138:G:0:T:0:N:0:O:1	3,61,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	139	22	20	0.02857142857142857	0.0	A:3:C:0:G:97:T:0:N:0:O:5	A:0:C:0:G:138:T:1:N:0:O:0	3,42,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	231	263	22	20	0.025974025974025976	0.0	A:6:C:0:G:225:T:0:N:0:O:0	A:0:C:0:G:263:T:0:N:0:O:0	6,97,0,134	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12513	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	139	22	20	0.018867924528301886	0.0	A:0:C:95:G:0:T:2:N:0:O:9	A:0:C:139:G:0:T:0:N:0:O:0	0,38,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	139	22	20	0.05747126436781609	0.0	A:0:C:79:G:0:T:5:N:0:O:3	A:0:C:139:G:0:T:0:N:0:O:0	0,59,5,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	109	22	20	0.0196078431372549	0.0	A:0:C:97:G:0:T:2:N:0:O:3	A:0:C:109:G:0:T:0:N:0:O:0	0,28,2,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	109	22	20	0.025210084033613446	0.0	A:1:C:3:G:0:T:102:N:0:O:13	A:0:C:0:G:0:T:109:N:0:O:0	0,52,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	109	22	20	0.024193548387096774	0.0	A:3:C:0:G:120:T:0:N:0:O:1	A:0:C:0:G:108:T:1:N:0:O:0	3,25,0,99	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	109	22	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:109:G:0:T:0:N:0:O:0	0,37,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13225	C	T	C	16	ignore low frequency variant	Pass	False	False	True	164	93	22	20	0.018292682926829267	0.0	A:0:C:145:G:0:T:3:N:0:O:16	A:0:C:92:G:0:T:0:N:0:O:1	1,77,2,87	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	13385	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	144	22	20	0.02631578947368421	0.0	A:3:C:0:G:110:T:0:N:0:O:1	A:0:C:0:G:144:T:0:N:0:O:0	1,44,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13471	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	144	22	20	0.02877697841726619	0.0	A:0:C:0:G:131:T:4:N:0:O:4	A:0:C:0:G:144:T:0:N:0:O:0	0,60,4,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	144	22	20	0.1111111111111111	0.0	A:1:C:46:G:0:T:6:N:0:O:1	A:1:C:143:G:0:T:0:N:0:O:0	0,43,6,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13482	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	144	22	20	0.038461538461538464	0.0	A:73:C:0:G:3:T:0:N:0:O:2	A:144:C:0:G:0:T:0:N:0:O:0	0,41,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	144	22	20	0.03614457831325301	0.0	A:77:C:0:G:3:T:0:N:0:O:3	A:144:C:0:G:0:T:0:N:0:O:0	0,49,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	144	22	20	0.028169014084507043	0.0	A:0:C:69:G:0:T:2:N:0:O:0	A:0:C:144:G:0:T:0:N:0:O:0	0,38,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	96	22	20	0.024793388429752067	0.0	A:0:C:118:G:0:T:3:N:0:O:0	A:0:C:96:G:0:T:0:N:0:O:0	0,57,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	96	22	20	0.043859649122807015	0.010416666666666666	A:5:C:0:G:107:T:0:N:0:O:2	A:1:C:0:G:95:T:0:N:0:O:0	5,29,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	97	22	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:97:T:0:N:0:O:0	2,21,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	196	22	20	0.021739130434782608	0.0	A:0:C:118:G:0:T:3:N:0:O:17	A:0:C:196:G:0:T:0:N:0:O:0	0,76,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	137	22	20	0.03333333333333333	0.0	A:87:C:0:G:0:T:3:N:0:O:0	A:137:C:0:G:0:T:0:N:0:O:0	3,55,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	14805	C	T	T	17	accept high frequency variant	Pass	False	True	True	131	137	22	20	0.9923664122137404	1.0	A:0:C:1:G:0:T:130:N:0:O:0	A:0:C:0:G:0:T:137:N:0:O:0	98,98,32,33	66.227	1369.6	yes	.	.	.	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	166	22	20	0.019801980198019802	0.0	A:0:C:98:G:0:T:2:N:0:O:1	A:0:C:166:G:0:T:0:N:0:O:0	0,79,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	123	214	22	20	0.032520325203252036	0.0	A:0:C:0:G:118:T:4:N:0:O:1	A:0:C:0:G:214:T:0:N:0:O:0	0,83,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	15810	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	214	22	20	0.024242424242424242	0.0514018691588785	A:1:C:160:G:0:T:4:N:0:O:0	A:0:C:203:G:0:T:11:N:0:O:0	3,106,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	169	22	20	0.06329113924050633	0.0	A:0:C:74:G:0:T:5:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,42,5,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	16093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	169	22	20	0.038834951456310676	0.0	A:0:C:4:G:0:T:99:N:0:O:0	A:0:C:0:G:0:T:169:N:0:O:0	4,48,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16094	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	169	22	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:93:N:0:O:2	A:0:C:0:G:0:T:169:N:0:O:0	2,51,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	169	22	20	0.020833333333333332	0.0	A:0:C:90:G:0:T:2:N:0:O:4	A:1:C:168:G:0:T:0:N:0:O:0	0,60,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	16179	A	C	A	16	ignore low frequency variant	Pass	False	False	True	236	337	22	20	0.0211864406779661	0.0	A:230:C:5:G:0:T:0:N:0:O:1	A:337:C:0:G:0:T:0:N:0:O:0	5,94,0,142	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	173	22	20	0.022222222222222223	0.0	A:0:C:87:G:1:T:2:N:0:O:0	A:1:C:172:G:0:T:0:N:0:O:0	0,59,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16697	T	G	T	16	ignore low frequency variant	Pass	False	False	True	124	193	22	20	0.024193548387096774	0.0	A:0:C:0:G:3:T:121:N:0:O:0	A:0:C:0:G:0:T:193:N:0:O:0	3,61,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	193	22	20	0.038834951456310676	0.0	A:4:C:0:G:97:T:0:N:0:O:2	A:0:C:0:G:191:T:2:N:0:O:0	4,30,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	193	22	20	0.019230769230769232	0.0	A:96:C:0:G:2:T:0:N:0:O:6	A:193:C:0:G:0:T:0:N:0:O:0	2,37,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	192	22	20	0.02040816326530612	0.0	A:1:C:91:G:0:T:2:N:0:O:4	A:0:C:192:G:0:T:0:N:0:O:0	0,59,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	155	22	20	0.02912621359223301	0.0	A:0:C:0:G:3:T:95:N:0:O:5	A:0:C:1:G:0:T:154:N:0:O:0	0,33,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	155	22	20	0.030612244897959183	0.0	A:95:C:0:G:3:T:0:N:0:O:0	A:155:C:0:G:0:T:0:N:0:O:0	0,20,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	155	22	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:155:G:0:T:0:N:0:O:0	1,35,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	96	22	20	0.029411764705882353	0.0	A:2:C:0:G:64:T:0:N:0:O:2	A:0:C:0:G:96:T:0:N:0:O:0	2,11,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	96	22	20	0.0379746835443038	0.0	A:75:C:0:G:3:T:0:N:0:O:1	A:96:C:0:G:0:T:0:N:0:O:0	3,17,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	97	22	20	0.025974025974025976	0.0	A:2:C:0:G:0:T:72:N:0:O:3	A:0:C:0:G:0:T:96:N:0:O:1	2,17,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	96	22	20	0.02912621359223301	0.0	A:100:C:3:G:0:T:0:N:0:O:0	A:96:C:0:G:0:T:0:N:0:O:0	3,50,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	96	22	20	0.05	0.0	A:0:C:95:G:0:T:5:N:0:O:0	A:0:C:96:G:0:T:0:N:0:O:0	0,67,5,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	96	22	20	0.056074766355140186	0.0	A:6:C:0:G:100:T:0:N:0:O:1	A:0:C:0:G:96:T:0:N:0:O:0	6,44,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	96	22	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:96:G:0:T:0:N:0:O:0	0,60,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	237	204	22	20	0.04219409282700422	0.0	A:0:C:212:G:0:T:10:N:0:O:15	A:0:C:204:G:0:T:0:N:0:O:0	0,150,10,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	129	22	20	0.039473684210526314	0.0	A:0:C:71:G:1:T:3:N:0:O:1	A:0:C:129:G:0:T:0:N:0:O:0	1,47,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	129	22	20	0.02857142857142857	0.007751937984496124	A:91:C:0:G:0:T:3:N:0:O:11	A:128:C:0:G:0:T:1:N:0:O:0	0,49,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	129	22	20	0.044642857142857144	0.0	A:5:C:0:G:106:T:0:N:0:O:1	A:0:C:0:G:129:T:0:N:0:O:0	0,65,5,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	129	22	20	0.027777777777777776	0.0	A:3:C:0:G:105:T:0:N:0:O:0	A:0:C:0:G:129:T:0:N:0:O:0	3,43,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	233	194	22	20	0.02145922746781116	0.0	A:5:C:0:G:228:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	5,102,0,131	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	147	79	22	20	0.02040816326530612	0.0	A:3:C:0:G:0:T:120:N:0:O:24	A:0:C:0:G:0:T:79:N:0:O:0	2,59,1,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	18247	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	79	22	20	0.02631578947368421	0.0379746835443038	A:0:C:110:G:0:T:3:N:0:O:1	A:0:C:76:G:0:T:3:N:0:O:0	3,60,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	183	22	20	0.035398230088495575	0.0	A:0:C:0:G:4:T:108:N:0:O:1	A:0:C:0:G:0:T:183:N:0:O:0	4,43,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	18508	C	T	T	17	accept high frequency variant	Pass	False	True	True	163	184	22	20	0.9079754601226994	0.9728260869565217	A:0:C:7:G:0:T:148:N:0:O:8	A:0:C:5:G:0:T:179:N:0:O:0	80,91,68,72	70.0	1911.0	yes	.	.	.	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	127	22	20	0.05194805194805195	0.0	A:4:C:0:G:72:T:0:N:0:O:1	A:0:C:0:G:126:T:0:N:0:O:1	4,25,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	137	22	20	0.026143790849673203	0.0	A:4:C:0:G:148:T:0:N:0:O:1	A:0:C:0:G:136:T:1:N:0:O:0	4,38,0,115	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	214	22	20	0.13095238095238096	0.0	A:0:C:73:G:0:T:11:N:0:O:0	A:0:C:214:G:0:T:0:N:0:O:0	0,60,11,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	115	22	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:100:N:0:O:3	A:0:C:0:G:0:T:115:N:0:O:0	0,44,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	182	22	20	0.02830188679245283	0.0	A:0:C:103:G:0:T:3:N:0:O:0	A:0:C:182:G:0:T:0:N:0:O:0	0,50,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	182	22	20	0.03418803418803419	0.0	A:112:C:0:G:4:T:0:N:0:O:1	A:182:C:0:G:0:T:0:N:0:O:0	3,39,1,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	20069	G	T	G	16	ignore low frequency variant	Pass	False	False	True	148	182	22	20	0.02027027027027027	0.0	A:0:C:0:G:141:T:3:N:0:O:4	A:0:C:0:G:182:T:0:N:0:O:0	2,65,1,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	168	22	20	0.019230769230769232	0.0	A:98:C:0:G:2:T:0:N:0:O:4	A:167:C:0:G:0:T:0:N:0:O:1	2,52,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	20370	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	168	22	20	0.024390243902439025	0.0	A:119:C:0:G:3:T:0:N:0:O:1	A:168:C:0:G:0:T:0:N:0:O:0	3,70,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	125	22	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:125:G:0:T:0:N:0:O:0	0,34,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	125	22	20	0.025423728813559324	0.0	A:3:C:0:G:115:T:0:N:0:O:0	A:0:C:0:G:125:T:0:N:0:O:0	3,36,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	124	22	20	0.02666666666666667	0.008064516129032258	A:0:C:1:G:2:T:72:N:0:O:0	A:0:C:0:G:1:T:123:N:0:O:0	1,7,1,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	172	22	20	0.1	0.005813953488372093	A:0:C:0:G:83:T:10:N:0:O:7	A:0:C:0:G:171:T:1:N:0:O:0	1,65,9,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	172	22	20	0.025	0.0	A:2:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:171:T:1:N:0:O:0	0,57,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	195	22	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,50,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	197	22	20	0.02459016393442623	0.0	A:0:C:119:G:0:T:3:N:0:O:0	A:1:C:196:G:0:T:0:N:0:O:0	0,59,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	301	22	20	0.01875	0.0	A:1:C:139:G:0:T:3:N:0:O:17	A:0:C:301:G:0:T:0:N:0:O:0	0,108,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	129	22	20	0.03	0.0	A:96:C:0:G:3:T:0:N:0:O:1	A:128:C:0:G:0:T:1:N:0:O:0	3,29,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	129	22	20	0.023622047244094488	0.0	A:3:C:0:G:120:T:0:N:0:O:4	A:0:C:0:G:128:T:1:N:0:O:0	3,55,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	125	22	20	0.025	0.0	A:117:C:0:G:3:T:0:N:0:O:0	A:125:C:0:G:0:T:0:N:0:O:0	3,58,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	216	22	20	0.027210884353741496	0.0	A:4:C:0:G:142:T:0:N:0:O:1	A:0:C:0:G:216:T:0:N:0:O:0	4,76,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	150	216	22	20	0.02666666666666667	0.0	A:0:C:0:G:4:T:145:N:0:O:1	A:0:C:0:G:0:T:216:N:0:O:0	4,68,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	216	22	20	0.02185792349726776	0.0	A:0:C:179:G:0:T:4:N:0:O:0	A:1:C:215:G:0:T:0:N:0:O:0	0,132,4,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	127	22	20	0.038834951456310676	0.0	A:0:C:0:G:4:T:98:N:0:O:1	A:0:C:0:G:0:T:127:N:0:O:0	4,37,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	22522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	127	22	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:0:C:127:G:0:T:0:N:0:O:0	2,33,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	124	22	20	0.02	0.0	A:3:C:0:G:147:T:0:N:0:O:0	A:0:C:0:G:124:T:0:N:0:O:0	3,51,0,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	22663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	124	22	20	0.019736842105263157	0.0	A:0:C:142:G:0:T:3:N:0:O:7	A:0:C:124:G:0:T:0:N:0:O:0	3,36,0,116	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23088	G	A	G	16	ignore low frequency variant	Pass	False	False	True	173	134	22	20	0.017341040462427744	0.0	A:3:C:0:G:147:T:0:N:0:O:23	A:0:C:0:G:134:T:0:N:0:O:0	3,69,0,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23237	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	149	22	20	0.03305785123966942	0.0	A:0:C:4:G:0:T:117:N:0:O:0	A:0:C:0:G:0:T:149:N:0:O:0	0,58,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23422	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	150	22	20	0.02142857142857143	0.0	A:0:C:137:G:0:T:3:N:0:O:0	A:1:C:149:G:0:T:0:N:0:O:0	3,56,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	175	22	20	0.041666666666666664	0.0	A:4:C:0:G:87:T:0:N:0:O:5	A:0:C:0:G:173:T:1:N:0:O:1	4,26,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	183	22	20	0.02	0.0	A:97:C:1:G:2:T:0:N:0:O:0	A:182:C:0:G:0:T:1:N:0:O:0	2,41,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23660	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	183	22	20	0.02459016393442623	0.0	A:0:C:0:G:117:T:3:N:0:O:2	A:0:C:0:G:183:T:0:N:0:O:0	0,51,3,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	123	22	20	0.14035087719298245	0.0	A:0:C:96:G:0:T:16:N:0:O:2	A:0:C:123:G:0:T:0:N:0:O:0	0,65,16,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	123	22	20	0.03278688524590164	0.0	A:0:C:118:G:0:T:4:N:0:O:0	A:0:C:123:G:0:T:0:N:0:O:0	3,46,1,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	123	22	20	0.025974025974025976	0.0	A:2:C:0:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:123:N:0:O:0	2,14,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	123	22	20	0.07142857142857142	0.0	A:0:C:78:G:0:T:6:N:0:O:0	A:0:C:123:G:0:T:0:N:0:O:0	0,57,6,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	118	22	20	0.030303030303030304	0.0	A:0:C:64:G:0:T:2:N:0:O:0	A:0:C:118:G:0:T:0:N:0:O:0	0,50,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	118	22	20	0.07042253521126761	0.0	A:0:C:61:G:0:T:5:N:0:O:5	A:0:C:118:G:0:T:0:N:0:O:0	0,61,5,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	118	22	20	0.04716981132075472	0.0	A:5:C:0:G:99:T:0:N:0:O:2	A:0:C:0:G:118:T:0:N:0:O:0	5,35,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	118	22	20	0.050505050505050504	0.0	A:5:C:0:G:92:T:0:N:0:O:2	A:0:C:0:G:118:T:0:N:0:O:0	5,23,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	167	22	20	0.03597122302158273	0.0	A:0:C:133:G:0:T:5:N:0:O:1	A:1:C:166:G:0:T:0:N:0:O:0	0,106,5,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	104	22	20	0.0425531914893617	0.0	A:4:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:104:T:0:N:0:O:0	0,49,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	104	22	20	0.05217391304347826	0.0	A:0:C:0:G:6:T:108:N:0:O:1	A:0:C:0:G:0:T:104:N:0:O:0	0,67,6,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	83	104	22	20	0.024096385542168676	0.0	A:0:C:2:G:0:T:81:N:0:O:0	A:0:C:0:G:0:T:104:N:0:O:0	2,30,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	147	22	20	0.02631578947368421	0.0	A:111:C:0:G:0:T:3:N:0:O:0	A:147:C:0:G:0:T:0:N:0:O:0	3,61,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	148	22	20	0.02531645569620253	0.0	A:0:C:75:G:0:T:2:N:0:O:2	A:0:C:148:G:0:T:0:N:0:O:0	0,67,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	145	22	20	0.020202020202020204	0.0	A:0:C:0:G:2:T:93:N:0:O:4	A:0:C:0:G:0:T:145:N:0:O:0	2,44,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	147	22	20	0.022727272727272728	0.0	A:3:C:119:G:0:T:0:N:0:O:10	A:0:C:147:G:0:T:0:N:0:O:0	3,66,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	150	22	20	0.027777777777777776	0.0	A:2:C:0:G:70:T:0:N:0:O:0	A:0:C:0:G:150:T:0:N:0:O:0	2,26,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	150	22	20	0.03125	0.0	A:60:C:2:G:0:T:0:N:0:O:2	A:150:C:0:G:0:T:0:N:0:O:0	1,36,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	150	22	20	0.028846153846153848	0.0	A:98:C:0:G:3:T:0:N:0:O:3	A:150:C:0:G:0:T:0:N:0:O:0	3,50,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	150	22	20	0.02702702702702703	0.0	A:71:C:2:G:0:T:0:N:0:O:1	A:150:C:0:G:0:T:0:N:0:O:0	2,23,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	150	22	20	0.031578947368421054	0.0	A:3:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:150:T:0:N:0:O:0	3,46,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	218	291	22	20	0.03211009174311927	0.003436426116838488	A:211:C:0:G:7:T:0:N:0:O:0	A:290:C:0:G:1:T:0:N:0:O:0	0,169,7,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26144	G	T	T	17	accept high frequency variant	Pass	False	True	True	166	176	22	20	0.9819277108433735	1.0	A:0:C:0:G:1:T:163:N:0:O:2	A:0:C:0:G:0:T:176:N:0:O:0	85,88,78,78	350.0	2612.3	yes	.	.	.	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	163	22	20	0.021739130434782608	0.0	A:0:C:105:G:0:T:3:N:0:O:30	A:0:C:162:G:0:T:0:N:0:O:1	1,112,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	161	22	20	0.03125	0.0	A:0:C:3:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:161:N:0:O:0	1,63,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	162	22	20	0.022222222222222223	0.0	A:0:C:130:G:0:T:3:N:0:O:2	A:0:C:162:G:0:T:0:N:0:O:0	1,89,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	162	22	20	0.02247191011235955	0.0	A:0:C:87:G:0:T:2:N:0:O:0	A:0:C:162:G:0:T:0:N:0:O:0	1,41,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	162	22	20	0.06818181818181818	0.0	A:6:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:161:T:1:N:0:O:0	6,33,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	220	294	22	20	0.07727272727272727	0.0	A:0:C:202:G:0:T:17:N:0:O:1	A:1:C:293:G:0:T:0:N:0:O:0	0,193,17,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	256	303	22	20	0.0546875	0.0	A:0:C:14:G:0:T:242:N:0:O:0	A:0:C:0:G:0:T:303:N:0:O:0	0,197,14,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	172	22	20	0.09803921568627451	0.0	A:10:C:0:G:90:T:0:N:0:O:2	A:0:C:0:G:172:T:0:N:0:O:0	10,21,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	172	22	20	0.031496062992125984	0.0	A:0:C:123:G:0:T:4:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	0,102,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	175	22	20	0.022058823529411766	0.0	A:3:C:0:G:133:T:0:N:0:O:0	A:0:C:0:G:170:T:1:N:0:O:4	3,66,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	119	22	20	0.02	0.0	A:0:C:2:G:0:T:93:N:0:O:5	A:0:C:0:G:0:T:119:N:0:O:0	0,69,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	119	22	20	0.023255813953488372	0.0	A:2:C:0:G:82:T:0:N:0:O:2	A:0:C:0:G:119:T:0:N:0:O:0	2,25,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	119	22	20	0.08791208791208792	0.0	A:0:C:83:G:0:T:8:N:0:O:0	A:0:C:119:G:0:T:0:N:0:O:0	0,72,8,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	119	22	20	0.020833333333333332	0.0	A:0:C:92:G:1:T:2:N:0:O:1	A:0:C:119:G:0:T:0:N:0:O:0	0,68,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	150	22	20	0.02127659574468085	0.0	A:87:C:0:G:2:T:0:N:0:O:5	A:150:C:0:G:0:T:0:N:0:O:0	2,42,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	105	22	20	0.030612244897959183	0.0	A:3:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:105:T:0:N:0:O:0	2,44,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	88	22	20	0.02586206896551724	0.0	A:0:C:3:G:0:T:111:N:0:O:2	A:0:C:0:G:0:T:88:N:0:O:0	3,78,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28300	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	88	22	20	0.030612244897959183	0.0	A:3:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:88:T:0:N:0:O:0	3,41,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28302	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	88	22	20	0.021739130434782608	0.0	A:2:C:0:G:87:T:0:N:0:O:3	A:0:C:0:G:88:T:0:N:0:O:0	2,26,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28471	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	164	22	20	0.024096385542168676	0.0	A:0:C:78:G:0:T:2:N:0:O:3	A:0:C:164:G:0:T:0:N:0:O:0	1,46,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	164	22	20	0.02654867256637168	0.012195121951219513	A:1:C:0:G:108:T:3:N:0:O:1	A:0:C:0:G:162:T:2:N:0:O:0	0,23,3,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	164	22	20	0.023255813953488372	0.0	A:0:C:0:G:124:T:3:N:0:O:2	A:0:C:0:G:164:T:0:N:0:O:0	0,40,3,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	171	164	22	20	0.029239766081871343	0.0	A:0:C:1:G:5:T:122:N:0:O:43	A:0:C:0:G:0:T:164:N:0:O:0	0,49,5,122	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	164	22	20	0.022727272727272728	0.0	A:2:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:164:T:0:N:0:O:0	0,47,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	164	22	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:1:C:163:G:0:T:0:N:0:O:0	0,37,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	164	22	20	0.04424778761061947	0.0	A:0:C:104:G:0:T:5:N:0:O:4	A:0:C:164:G:0:T:0:N:0:O:0	0,44,5,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28725	C	T	C	16	ignore low frequency variant	Pass	False	False	True	240	327	22	20	0.025	0.0	A:0:C:231:G:0:T:6:N:0:O:3	A:0:C:327:G:0:T:0:N:0:O:0	0,76,6,164	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00032	artic-pipeline	NB03	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	169	22	20	0.029411764705882353	0.0	A:0:C:98:G:0:T:3:N:0:O:1	A:1:C:168:G:0:T:0:N:0:O:0	0,25,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	169	22	20	0.03	0.0	A:0:C:95:G:0:T:3:N:0:O:2	A:1:C:168:G:0:T:0:N:0:O:0	0,26,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	170	22	20	0.03278688524590164	0.0	A:4:C:0:G:114:T:0:N:0:O:4	A:0:C:0:G:170:T:0:N:0:O:0	4,13,0,109	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	170	22	20	0.023529411764705882	0.0	A:0:C:80:G:0:T:2:N:0:O:3	A:0:C:170:G:0:T:0:N:0:O:0	0,21,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	170	22	20	0.03	0.0	A:0:C:3:G:0:T:96:N:0:O:1	A:0:C:0:G:0:T:170:N:0:O:0	0,22,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	102	322	22	20	0.08823529411764706	0.0	A:0:C:93:G:0:T:9:N:0:O:0	A:0:C:322:G:0:T:0:N:0:O:0	0,86,9,16	.	80.5	no	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00032	artic-pipeline	NB03	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	227	G	A	N	1	near depth threshold	Alarm	False	False	False	26	150	22	20	0.07692307692307693	0.0	A:2:C:0:G:18:T:1:N:0:O:5	A:0:C:0:G:150:T:0:N:0:O:0	2,18,0,8	.	144.8	no	depth near threshold	.	mismatch(n+s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	62	147	22	20	0.9193548387096774	1.0	A:0:C:0:G:0:T:57:N:0:O:5	A:0:C:0:G:0:T:147:N:0:O:0	48,53,9,9	66.227	1660.7	yes	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	243	T	A	T	16	ignore low frequency variant	Pass	False	False	True	43	147	22	20	0.023255813953488372	0.0	A:1:C:0:G:0:T:40:N:0:O:2	A:0:C:0:G:0:T:147:N:0:O:0	1,33,0,10	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	147	22	20	0.02531645569620253	0.0	A:2:C:0:G:75:T:1:N:0:O:1	A:0:C:0:G:147:T:0:N:0:O:0	2,70,0,9	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	295	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	147	22	20	0.02	0.0	A:1:C:0:G:46:T:0:N:0:O:3	A:0:C:0:G:147:T:0:N:0:O:0	1,36,0,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	35	147	22	20	0.05714285714285714	0.0	A:2:C:0:G:0:T:27:N:0:O:6	A:0:C:0:G:0:T:147:N:0:O:0	2,27,0,8	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	147	22	20	0.06666666666666667	0.0	A:0:C:24:G:0:T:2:N:0:O:4	A:0:C:147:G:0:T:0:N:0:O:0	2,20,0,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	484	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	233	22	20	0.022900763358778626	0.0	A:0:C:3:G:0:T:128:N:0:O:0	A:0:C:0:G:0:T:233:N:0:O:0	0,71,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1027	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	148	22	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:148:N:0:O:0	0,58,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	139	148	22	20	0.9928057553956835	1.0	A:0:C:0:G:0:T:138:N:0:O:1	A:0:C:0:G:0:T:148:N:0:O:0	65,66,73,73	70.0	1531.6	yes	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	148	22	20	0.10752688172043011	0.0	A:0:C:72:G:0:T:10:N:0:O:11	A:1:C:147:G:0:T:0:N:0:O:0	0,36,10,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	148	22	20	0.0273972602739726	0.0	A:4:C:0:G:112:T:0:N:0:O:30	A:0:C:0:G:148:T:0:N:0:O:0	1,46,3,100	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	148	22	20	0.03409090909090909	0.0	A:84:C:0:G:3:T:0:N:0:O:1	A:148:C:0:G:0:T:0:N:0:O:0	1,40,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	148	22	20	0.018867924528301886	0.0	A:0:C:96:G:0:T:2:N:0:O:8	A:1:C:147:G:0:T:0:N:0:O:0	1,49,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	209	22	20	0.026785714285714284	0.0	A:0:C:106:G:0:T:3:N:0:O:3	A:3:C:206:G:0:T:0:N:0:O:0	0,43,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	208	22	20	0.025423728813559324	0.0	A:0:C:115:G:0:T:3:N:0:O:0	A:3:C:205:G:0:T:0:N:0:O:0	0,44,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	205	22	20	0.03418803418803419	0.0	A:0:C:4:G:0:T:113:N:0:O:0	A:0:C:0:G:0:T:205:N:0:O:0	0,43,4,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1581	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	177	22	20	0.024793388429752067	0.0	A:0:C:3:G:0:T:118:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,37,3,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	139	22	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:139:N:0:O:0	1,35,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	139	22	20	0.03225806451612903	0.0	A:2:C:0:G:59:T:0:N:0:O:1	A:0:C:0:G:139:T:0:N:0:O:0	1,42,1,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	139	22	20	0.05434782608695652	0.0	A:0:C:5:G:0:T:83:N:0:O:4	A:0:C:0:G:0:T:139:N:0:O:0	0,45,5,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	1779	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	139	22	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:139:G:0:T:0:N:0:O:0	0,40,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	138	22	20	0.03571428571428571	0.0	A:54:C:0:G:2:T:0:N:0:O:0	A:138:C:0:G:0:T:0:N:0:O:0	2,15,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	2121	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	179	22	20	0.03968253968253968	0.0	A:0:C:121:G:0:T:5:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	0,59,5,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	179	22	20	0.09473684210526316	0.0	A:9:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:178:T:1:N:0:O:0	9,26,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	183	22	20	0.023809523809523808	0.0	A:2:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:181:T:2:N:0:O:0	0,14,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	2670	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	190	22	20	0.022222222222222223	0.0	A:0:C:3:G:0:T:131:N:0:O:1	A:0:C:0:G:0:T:190:N:0:O:0	0,71,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	190	22	20	0.03125	0.0	A:123:C:0:G:4:T:0:N:0:O:1	A:190:C:0:G:0:T:0:N:0:O:0	4,50,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	190	22	20	0.023255813953488372	0.0	A:124:C:0:G:3:T:0:N:0:O:2	A:190:C:0:G:0:T:0:N:0:O:0	3,61,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	152	22	20	0.02666666666666667	0.0	A:73:C:2:G:0:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	0,29,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	131	152	22	20	0.7709923664122137	0.9868421052631579	A:0:C:0:G:0:T:101:N:0:O:30	A:0:C:1:G:0:T:150:N:0:O:1	52,82,49,49	66.227	1518.0	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	101	152	22	20	0.0297029702970297	0.0	A:0:C:0:G:88:T:3:N:0:O:10	A:0:C:0:G:152:T:0:N:0:O:0	0,62,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	164	22	20	0.04040404040404041	0.0	A:0:C:4:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,59,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	164	22	20	0.030303030303030304	0.0	A:121:C:0:G:4:T:0:N:0:O:7	A:164:C:0:G:0:T:0:N:0:O:0	4,40,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	164	22	20	0.04950495049504951	0.0	A:96:C:0:G:5:T:0:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	0,57,5,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	164	22	20	0.038834951456310676	0.0	A:99:C:0:G:0:T:4:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	0,61,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	164	22	20	0.02727272727272727	0.0	A:0:C:107:G:0:T:3:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	0,56,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	164	22	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	0,45,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	164	22	20	0.029850746268656716	0.0	A:64:C:0:G:2:T:0:N:0:O:1	A:164:C:0:G:0:T:0:N:0:O:0	1,22,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	178	22	20	0.1	0.0	A:0:C:80:G:0:T:9:N:0:O:1	A:0:C:178:G:0:T:0:N:0:O:0	0,52,9,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3606	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	178	22	20	0.025210084033613446	0.0	A:3:C:0:G:112:T:0:N:0:O:4	A:0:C:0:G:178:T:0:N:0:O:0	3,46,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	178	22	20	0.025974025974025976	0.0	A:2:C:0:G:75:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	2,35,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	132	22	20	0.02564102564102564	0.0	A:3:C:0:G:113:T:0:N:0:O:1	A:0:C:0:G:131:T:1:N:0:O:0	0,88,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	132	22	20	0.030303030303030304	0.0	A:3:C:0:G:92:T:0:N:0:O:4	A:0:C:0:G:131:T:1:N:0:O:0	3,51,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	132	22	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:132:T:0:N:0:O:0	1,52,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	132	22	20	0.0234375	0.0	A:0:C:121:G:0:T:3:N:0:O:4	A:0:C:132:G:0:T:0:N:0:O:0	1,98,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	234	295	22	20	0.021367521367521368	0.0	A:229:C:0:G:5:T:0:N:0:O:0	A:295:C:0:G:0:T:0:N:0:O:0	5,119,0,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	285	295	22	20	0.02456140350877193	0.0	A:7:C:0:G:253:T:0:N:0:O:25	A:0:C:0:G:294:T:1:N:0:O:0	7,171,0,114	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4179	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	163	22	20	0.02702702702702703	0.0	A:72:C:0:G:2:T:0:N:0:O:0	A:163:C:0:G:0:T:0:N:0:O:0	1,32,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	162	22	20	0.028846153846153848	0.0	A:101:C:0:G:3:T:0:N:0:O:0	A:162:C:0:G:0:T:0:N:0:O:0	3,43,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4207	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	162	22	20	0.023529411764705882	0.0	A:2:C:0:G:76:T:0:N:0:O:7	A:0:C:0:G:162:T:0:N:0:O:0	1,18,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	194	361	22	20	0.020618556701030927	0.008310249307479225	A:0:C:0:G:179:T:4:N:0:O:11	A:0:C:0:G:358:T:3:N:0:O:0	0,153,4,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	156	142	22	20	0.02564102564102564	0.0	A:0:C:0:G:4:T:148:N:0:O:4	A:0:C:0:G:0:T:142:N:0:O:0	0,95,4,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	165	22	20	0.027522935779816515	0.0	A:0:C:106:G:0:T:3:N:0:O:0	A:0:C:165:G:0:T:0:N:0:O:0	0,61,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5141	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	165	22	20	0.025	0.0	A:113:C:0:G:0:T:3:N:0:O:4	A:165:C:0:G:0:T:0:N:0:O:0	2,40,1,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	165	22	20	0.03669724770642202	0.0	A:0:C:0:G:102:T:4:N:0:O:3	A:0:C:0:G:165:T:0:N:0:O:0	4,41,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	163	22	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:163:N:0:O:0	0,67,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	182	22	20	0.09876543209876543	0.0	A:0:C:72:G:0:T:8:N:0:O:1	A:1:C:181:G:0:T:0:N:0:O:0	0,56,8,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	182	22	20	0.1038961038961039	0.005494505494505495	A:0:C:8:G:0:T:69:N:0:O:0	A:0:C:1:G:0:T:181:N:0:O:0	0,52,8,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	171	22	20	0.03759398496240601	0.0	A:5:C:0:G:127:T:0:N:0:O:1	A:0:C:0:G:171:T:0:N:0:O:0	5,37,0,96	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	171	22	20	0.0449438202247191	0.0	A:0:C:74:G:0:T:4:N:0:O:11	A:0:C:171:G:0:T:0:N:0:O:0	0,68,4,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	171	22	20	0.019801980198019802	0.0	A:0:C:97:G:0:T:2:N:0:O:2	A:1:C:170:G:0:T:0:N:0:O:0	0,49,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	171	22	20	0.056179775280898875	0.0	A:0:C:82:G:0:T:5:N:0:O:2	A:1:C:170:G:0:T:0:N:0:O:0	0,54,5,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	101	22	20	0.04819277108433735	0.0	A:0:C:77:G:0:T:4:N:0:O:2	A:0:C:101:G:0:T:0:N:0:O:0	0,44,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	176	22	20	0.023622047244094488	0.0	A:119:C:0:G:3:T:0:N:0:O:5	A:176:C:0:G:0:T:0:N:0:O:0	3,52,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	176	22	20	0.0297029702970297	0.0	A:3:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:175:T:1:N:0:O:0	3,39,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	191	22	20	0.025	0.0	A:75:C:1:G:0:T:2:N:0:O:2	A:191:C:0:G:0:T:0:N:0:O:0	0,57,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	7225	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	123	22	20	0.023255813953488372	0.0	A:0:C:2:G:0:T:84:N:0:O:0	A:0:C:0:G:0:T:123:N:0:O:0	2,41,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	134	22	20	0.045454545454545456	0.0	A:3:C:0:G:62:T:0:N:0:O:1	A:0:C:0:G:134:T:0:N:0:O:0	3,19,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	119	184	22	20	0.025210084033613446	0.0	A:116:C:3:G:0:T:0:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	3,43,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	8024	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	153	22	20	0.030534351145038167	0.013071895424836602	A:4:C:0:G:126:T:0:N:0:O:1	A:2:C:0:G:151:T:0:N:0:O:0	3,62,1,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	153	22	20	0.03508771929824561	0.0	A:110:C:0:G:4:T:0:N:0:O:0	A:153:C:0:G:0:T:0:N:0:O:0	4,38,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	153	22	20	0.02459016393442623	0.0	A:0:C:3:G:0:T:119:N:0:O:0	A:0:C:0:G:0:T:153:N:0:O:0	0,69,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	199	22	20	0.021052631578947368	0.0	A:93:C:0:G:2:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,42,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	181	22	20	0.029850746268656716	0.0	A:2:C:0:G:64:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	2,2,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	127	22	20	0.03508771929824561	0.0	A:4:C:0:G:0:T:100:N:0:O:10	A:0:C:0:G:0:T:127:N:0:O:0	3,64,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	147	22	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:0:N:0:O:1	A:147:C:0:G:0:T:0:N:0:O:0	2,24,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	147	22	20	0.023622047244094488	0.006802721088435374	A:0:C:0:G:123:T:3:N:0:O:1	A:0:C:0:G:146:T:1:N:0:O:0	0,53,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	178	243	22	20	0.0449438202247191	0.0	A:0:C:167:G:0:T:8:N:0:O:3	A:1:C:242:G:0:T:0:N:0:O:0	0,126,8,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	96	22	20	0.02631578947368421	0.0	A:0:C:107:G:0:T:3:N:0:O:4	A:0:C:96:G:0:T:0:N:0:O:0	0,71,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9714	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	96	22	20	0.02040816326530612	0.0	A:2:C:87:G:1:T:1:N:0:O:7	A:0:C:96:G:0:T:0:N:0:O:0	2,68,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	153	266	22	20	0.032679738562091505	0.0	A:0:C:5:G:0:T:147:N:0:O:1	A:0:C:0:G:0:T:266:N:0:O:0	1,64,4,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	175	22	20	0.034482758620689655	0.0	A:2:C:0:G:56:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	2,18,0,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	175	22	20	0.02564102564102564	0.0	A:0:C:71:G:0:T:2:N:0:O:5	A:0:C:175:G:0:T:0:N:0:O:0	2,25,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	153	22	20	0.042735042735042736	0.0	A:0:C:112:G:0:T:5:N:0:O:0	A:0:C:153:G:0:T:0:N:0:O:0	0,51,5,66	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	10523	G	C	C	17	accept high frequency variant	Pass	False	True	True	91	152	22	20	0.9560439560439561	1.0	A:0:C:87:G:2:T:1:N:0:O:1	A:0:C:152:G:0:T:0:N:0:O:0	47,48,40,43	200.206	854.5	yes	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	10527	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	152	22	20	0.015625	0.0	A:0:C:97:G:0:T:2:N:0:O:29	A:1:C:151:G:0:T:0:N:0:O:0	1,64,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	153	22	20	0.025	0.0	A:116:C:0:G:3:T:0:N:0:O:1	A:153:C:0:G:0:T:0:N:0:O:0	3,38,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	169	22	20	0.038834951456310676	0.0	A:0:C:98:G:1:T:4:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,57,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	169	22	20	0.03571428571428571	0.0	A:0:C:0:G:4:T:105:N:0:O:3	A:0:C:0:G:0:T:169:N:0:O:0	0,51,4,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	11075	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	112	22	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:44:N:0:O:0	A:0:C:0:G:0:T:112:N:0:O:0	1,13,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	11453	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	125	22	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:125:T:0:N:0:O:0	2,53,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	125	22	20	0.021505376344086023	0.0	A:89:C:0:G:0:T:2:N:0:O:2	A:125:C:0:G:0:T:0:N:0:O:0	2,53,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	169	22	20	0.1348314606741573	0.0	A:0:C:75:G:0:T:12:N:0:O:2	A:0:C:169:G:0:T:0:N:0:O:0	0,63,12,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	11819	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	169	22	20	0.02531645569620253	0.0	A:0:C:2:G:0:T:75:N:0:O:2	A:0:C:0:G:0:T:169:N:0:O:0	2,52,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	12119	C	T	T	13	new position validated by illumina	Pass	True	True	True	115	143	22	20	0.9739130434782609	1.0	A:0:C:0:G:0:T:112:N:0:O:3	A:0:C:0:G:0:T:143:N:0:O:0	45,48,67,67	210.0	1110.2	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	12554	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	157	22	20	0.028037383177570093	0.0	A:3:C:0:G:99:T:0:N:0:O:5	A:0:C:0:G:157:T:0:N:0:O:0	1,27,2,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	158	22	20	0.15217391304347827	0.0	A:0:C:76:G:0:T:14:N:0:O:2	A:1:C:157:G:0:T:0:N:0:O:0	0,53,14,39	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	116	22	20	0.044642857142857144	0.0	A:104:C:0:G:5:T:0:N:0:O:3	A:116:C:0:G:0:T:0:N:0:O:0	5,41,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	116	22	20	0.02830188679245283	0.0	A:101:C:0:G:3:T:0:N:0:O:2	A:116:C:0:G:0:T:0:N:0:O:0	3,38,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	116	22	20	0.03937007874015748	0.0	A:5:C:0:G:116:T:0:N:0:O:6	A:0:C:0:G:116:T:0:N:0:O:0	4,40,1,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	116	22	20	0.04	0.0	A:0:C:96:G:0:T:4:N:0:O:0	A:2:C:114:G:0:T:0:N:0:O:0	0,55,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	116	22	20	0.02040816326530612	0.0	A:2:C:0:G:94:T:0:N:0:O:2	A:0:C:0:G:116:T:0:N:0:O:0	2,27,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13218	A	C	A	16	ignore low frequency variant	Pass	False	False	True	149	117	22	20	0.026845637583892617	0.0	A:142:C:4:G:1:T:0:N:0:O:2	A:117:C:0:G:0:T:0:N:0:O:0	4,41,0,108	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	180	22	20	0.07575757575757576	0.0	A:0:C:59:G:0:T:5:N:0:O:2	A:0:C:180:G:0:T:0:N:0:O:0	0,57,5,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	180	22	20	0.045871559633027525	0.0	A:5:C:0:G:93:T:0:N:0:O:11	A:0:C:0:G:178:T:2:N:0:O:0	5,41,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	179	22	20	0.02857142857142857	0.0	A:0:C:0:G:3:T:101:N:0:O:1	A:0:C:0:G:0:T:179:N:0:O:0	0,63,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	180	22	20	0.03418803418803419	0.0	A:0:C:112:G:0:T:4:N:0:O:1	A:1:C:179:G:0:T:0:N:0:O:0	2,62,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	116	22	20	0.025	0.0	A:115:C:0:G:3:T:0:N:0:O:2	A:116:C:0:G:0:T:0:N:0:O:0	0,48,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	98	22	20	0.06	0.0	A:6:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:98:T:0:N:0:O:0	6,37,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	103	210	22	20	0.9902912621359223	1.0	A:0:C:0:G:0:T:102:N:0:O:1	A:0:C:0:G:0:T:210:N:0:O:0	41,42,61,61	332.659	1277.9	yes	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	14697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	169	22	20	0.0234375	0.0	A:0:C:122:G:0:T:3:N:0:O:3	A:1:C:168:G:0:T:0:N:0:O:0	0,77,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	168	22	20	0.02857142857142857	0.0	A:101:C:0:G:0:T:3:N:0:O:1	A:168:C:0:G:0:T:0:N:0:O:0	3,51,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	14734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	168	22	20	0.0234375	0.0	A:3:C:0:G:124:T:0:N:0:O:1	A:0:C:0:G:168:T:0:N:0:O:0	3,71,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	143	22	20	0.058823529411764705	0.0	A:0:C:5:G:0:T:77:N:0:O:3	A:0:C:0:G:0:T:143:N:0:O:0	0,67,5,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	15267	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	142	22	20	0.024096385542168676	0.007042253521126761	A:78:C:0:G:2:T:0:N:0:O:3	A:141:C:0:G:1:T:0:N:0:O:0	0,26,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	15673	T	G	T	16	ignore low frequency variant	Pass	False	False	True	144	210	22	20	0.020833333333333332	0.0	A:0:C:0:G:3:T:141:N:0:O:0	A:0:C:0:G:0:T:210:N:0:O:0	3,108,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	15768	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	210	22	20	0.022388059701492536	0.0	A:3:C:0:G:131:T:0:N:0:O:0	A:0:C:0:G:209:T:1:N:0:O:0	2,104,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	159	22	20	0.036585365853658534	0.0	A:0:C:78:G:0:T:3:N:0:O:1	A:0:C:159:G:0:T:0:N:0:O:0	0,45,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	159	22	20	0.043478260869565216	0.0	A:0:C:110:G:0:T:5:N:0:O:0	A:0:C:159:G:0:T:0:N:0:O:0	0,65,5,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	180	22	20	0.038834951456310676	0.0	A:98:C:0:G:0:T:4:N:0:O:1	A:180:C:0:G:0:T:0:N:0:O:0	4,55,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	110	180	22	20	0.02727272727272727	0.0	A:0:C:106:G:3:T:0:N:0:O:1	A:0:C:180:G:0:T:0:N:0:O:0	3,56,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	184	22	20	0.028846153846153848	0.0	A:0:C:0:G:100:T:3:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	3,45,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	184	22	20	0.0392156862745098	0.0	A:4:C:0:G:94:T:0:N:0:O:4	A:0:C:0:G:183:T:1:N:0:O:0	4,30,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	184	22	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	2,68,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	184	22	20	0.02631578947368421	0.0	A:0:C:107:G:0:T:3:N:0:O:4	A:0:C:184:G:0:T:0:N:0:O:0	0,70,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	151	22	20	0.02912621359223301	0.0	A:0:C:0:G:3:T:100:N:0:O:0	A:0:C:1:G:0:T:150:N:0:O:0	0,46,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	174	151	22	20	0.017241379310344827	0.0	A:3:C:0:G:131:T:2:N:0:O:38	A:0:C:0:G:151:T:0:N:0:O:0	0,68,3,106	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	151	22	20	0.04081632653061224	0.0	A:94:C:0:G:4:T:0:N:0:O:0	A:151:C:0:G:0:T:0:N:0:O:0	0,28,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	152	22	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:0:C:152:G:0:T:0:N:0:O:0	0,44,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	191	213	22	20	0.02617801047120419	0.0	A:186:C:0:G:5:T:0:N:0:O:0	A:213:C:0:G:0:T:0:N:0:O:0	5,62,0,129	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	116	22	20	0.03614457831325301	0.0	A:0:C:77:G:0:T:3:N:0:O:3	A:0:C:116:G:0:T:0:N:0:O:0	0,52,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	116	22	20	0.03225806451612903	0.0	A:4:C:0:G:120:T:0:N:0:O:0	A:0:C:0:G:116:T:0:N:0:O:0	4,36,0,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	116	22	20	0.022222222222222223	0.0	A:0:C:88:G:0:T:2:N:0:O:0	A:0:C:116:G:0:T:0:N:0:O:0	0,46,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	116	22	20	0.03278688524590164	0.0	A:0:C:113:G:0:T:4:N:0:O:5	A:0:C:116:G:0:T:0:N:0:O:0	0,52,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17722	G	T	G	16	ignore low frequency variant	Pass	False	False	True	273	285	22	20	0.02197802197802198	0.021052631578947368	A:0:C:0:G:266:T:6:N:0:O:1	A:0:C:0:G:279:T:6:N:0:O:0	2,108,4,165	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	223	269	22	20	0.03587443946188341	0.0	A:0:C:201:G:0:T:8:N:0:O:14	A:1:C:268:G:0:T:0:N:0:O:0	1,114,7,109	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	169	22	20	0.025	0.0	A:0:C:78:G:0:T:2:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,38,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	17972	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	169	22	20	0.022900763358778626	0.0	A:3:C:0:G:126:T:0:N:0:O:2	A:0:C:0:G:169:T:0:N:0:O:0	3,53,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	251	275	22	20	0.0199203187250996	0.0	A:5:C:0:G:244:T:0:N:0:O:2	A:0:C:0:G:275:T:0:N:0:O:0	5,84,0,167	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18086	C	A	A	13	new position validated by illumina	Pass	False	True	True	148	108	22	20	0.9864864864864865	1.0	A:146:C:1:G:0:T:0:N:0:O:1	A:108:C:0:G:0:T:0:N:0:O:0	63,64,83,84	70.0	1677.0	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	189	22	20	0.027586206896551724	0.0	A:0:C:141:G:0:T:4:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,79,4,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	190	22	20	0.027210884353741496	0.0	A:0:C:142:G:0:T:4:N:0:O:1	A:0:C:190:G:0:T:0:N:0:O:0	0,88,4,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18367	G	A	G	16	ignore low frequency variant	Pass	False	False	True	166	190	22	20	0.024096385542168676	0.0	A:4:C:0:G:162:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	4,84,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	190	22	20	0.05405405405405406	0.0	A:0:C:0:G:6:T:105:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	5,45,1,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	190	22	20	0.025157232704402517	0.0	A:4:C:0:G:151:T:0:N:0:O:4	A:0:C:0:G:190:T:0:N:0:O:0	4,61,0,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	136	22	20	0.08536585365853659	0.0	A:7:C:0:G:74:T:0:N:0:O:1	A:0:C:0:G:136:T:0:N:0:O:0	7,25,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	19018	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	155	22	20	0.02097902097902098	0.0	A:0:C:139:G:0:T:3:N:0:O:1	A:1:C:154:G:0:T:0:N:0:O:0	0,80,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	155	22	20	0.032520325203252036	0.0	A:4:C:0:G:118:T:0:N:0:O:1	A:0:C:0:G:154:T:1:N:0:O:0	4,32,0,91	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	253	22	20	0.17391304347826086	0.0	A:0:C:57:G:0:T:12:N:0:O:0	A:1:C:252:G:0:T:0:N:0:O:0	0,45,12,24	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	176	106	22	20	0.017045454545454544	0.0	A:3:C:0:G:0:T:137:N:0:O:36	A:0:C:0:G:0:T:106:N:0:O:0	1,64,2,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	19982	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	182	22	20	0.02112676056338028	0.0	A:0:C:3:G:0:T:139:N:0:O:0	A:0:C:0:G:0:T:182:N:0:O:0	0,51,3,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	180	22	20	0.024096385542168676	0.0	A:0:C:0:G:2:T:79:N:0:O:2	A:0:C:0:G:0:T:180:N:0:O:0	0,30,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	20134	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	182	22	20	0.020833333333333332	0.0	A:2:C:0:G:88:T:0:N:0:O:6	A:0:C:0:G:181:T:1:N:0:O:0	2,48,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	20307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	180	22	20	0.024793388429752067	0.0	A:0:C:118:G:0:T:3:N:0:O:0	A:0:C:180:G:0:T:0:N:0:O:0	0,89,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	182	22	20	0.04040404040404041	0.0	A:94:C:0:G:4:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:1	4,59,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	174	22	20	0.043859649122807015	0.0	A:5:C:0:G:109:T:0:N:0:O:0	A:0:C:0:G:174:T:0:N:0:O:0	5,29,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	186	22	20	0.14563106796116504	0.0	A:0:C:0:G:78:T:15:N:0:O:10	A:0:C:0:G:186:T:0:N:0:O:0	0,65,15,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	280	22	20	0.030612244897959183	0.0	A:0:C:95:G:0:T:3:N:0:O:0	A:0:C:280:G:0:T:0:N:0:O:0	0,55,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	253	22	20	0.02631578947368421	0.0	A:2:C:0:G:0:T:42:N:0:O:32	A:0:C:0:G:0:T:253:N:0:O:0	2,58,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	247	22	20	0.022727272727272728	0.0	A:0:C:86:G:0:T:2:N:0:O:0	A:5:C:242:G:0:T:0:N:0:O:0	0,52,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	170	333	22	20	0.023529411764705882	0.0	A:4:C:0:G:166:T:0:N:0:O:0	A:0:C:0:G:330:T:3:N:0:O:0	4,87,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	154	22	20	0.02127659574468085	0.0	A:0:C:91:G:0:T:2:N:0:O:1	A:0:C:154:G:0:T:0:N:0:O:0	0,64,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	154	22	20	0.022988505747126436	0.0	A:85:C:0:G:2:T:0:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	2,27,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	154	22	20	0.03508771929824561	0.0	A:4:C:0:G:110:T:0:N:0:O:0	A:0:C:0:G:154:T:0:N:0:O:0	4,53,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	129	22	20	0.09411764705882353	0.0	A:0:C:75:G:0:T:8:N:0:O:2	A:2:C:127:G:0:T:0:N:0:O:0	7,25,1,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	175	130	22	20	0.017142857142857144	0.0	A:116:C:0:G:0:T:3:N:0:O:56	A:130:C:0:G:0:T:0:N:0:O:0	0,113,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	21955	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	130	22	20	0.02	0.0	A:2:C:0:G:1:T:97:N:0:O:0	A:0:C:0:G:0:T:130:N:0:O:0	0,49,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	50	22	20	0.05172413793103448	0.0	A:51:C:0:G:3:T:0:N:0:O:4	A:50:C:0:G:0:T:0:N:0:O:0	2,34,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	68	50	22	20	0.04411764705882353	0.0	A:0:C:0:G:3:T:65:N:0:O:0	A:0:C:0:G:0:T:50:N:0:O:0	3,18,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	148	22	20	0.033112582781456956	0.0	A:5:C:0:G:146:T:0:N:0:O:0	A:0:C:0:G:148:T:0:N:0:O:0	5,45,0,106	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	22809	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	148	22	20	0.02127659574468085	0.006756756756756757	A:3:C:0:G:119:T:0:N:0:O:19	A:1:C:0:G:147:T:0:N:0:O:0	0,109,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	154	22	20	0.03361344537815126	0.0	A:0:C:4:G:0:T:111:N:0:O:4	A:0:C:0:G:0:T:154:N:0:O:0	0,74,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	128	148	22	20	0.921875	1.0	A:0:C:0:G:118:T:0:N:0:O:10	A:0:C:0:G:148:T:0:N:0:O:0	50,60,68,68	275.463	1574.2	yes	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	189	22	20	0.03571428571428571	0.0	A:4:C:0:G:96:T:0:N:0:O:12	A:0:C:0:G:185:T:2:N:0:O:2	4,31,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	139	22	20	0.09900990099009901	0.0	A:0:C:90:G:0:T:10:N:0:O:1	A:0:C:139:G:0:T:0:N:0:O:0	0,66,10,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	139	22	20	0.024390243902439025	0.0	A:0:C:2:G:0:T:80:N:0:O:0	A:0:C:0:G:0:T:139:N:0:O:0	1,8,1,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	23996	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	138	22	20	0.02459016393442623	0.0	A:3:C:119:G:0:T:0:N:0:O:0	A:0:C:138:G:0:T:0:N:0:O:0	1,62,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	139	22	20	0.058823529411764705	0.0	A:0:C:80:G:0:T:5:N:0:O:0	A:0:C:139:G:0:T:0:N:0:O:0	0,59,5,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	135	22	20	0.024691358024691357	0.0	A:0:C:78:G:0:T:2:N:0:O:1	A:1:C:134:G:0:T:0:N:0:O:0	0,54,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	135	22	20	0.05154639175257732	0.0	A:5:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:135:T:0:N:0:O:0	5,25,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	135	22	20	0.03225806451612903	0.0	A:3:C:0:G:88:T:0:N:0:O:2	A:0:C:0:G:135:T:0:N:0:O:0	3,17,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24337	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	135	22	20	0.02459016393442623	0.0	A:0:C:119:G:0:T:3:N:0:O:0	A:0:C:135:G:0:T:0:N:0:O:0	0,54,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	165	22	20	0.02054794520547945	0.0	A:3:C:137:G:0:T:3:N:0:O:3	A:0:C:165:G:0:T:0:N:0:O:0	0,71,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24656	T	A	T	16	ignore low frequency variant	Pass	False	False	True	153	165	22	20	0.0196078431372549	0.0	A:3:C:0:G:0:T:147:N:0:O:3	A:0:C:0:G:0:T:165:N:0:O:0	2,94,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	112	22	20	0.03333333333333333	0.0	A:3:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:112:T:0:N:0:O:0	0,55,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	112	22	20	0.043478260869565216	0.0	A:0:C:0:G:5:T:110:N:0:O:0	A:0:C:0:G:0:T:112:N:0:O:0	0,79,5,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	112	22	20	0.025210084033613446	0.0	A:0:C:116:G:0:T:3:N:0:O:0	A:0:C:112:G:0:T:0:N:0:O:0	0,82,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	69	112	22	20	0.028985507246376812	0.0	A:0:C:2:G:0:T:67:N:0:O:0	A:0:C:0:G:0:T:112:N:0:O:0	1,36,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	25132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	146	22	20	0.025210084033613446	0.0	A:0:C:114:G:0:T:3:N:0:O:2	A:0:C:146:G:0:T:0:N:0:O:0	0,59,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	114	146	22	20	0.03508771929824561	0.0	A:110:C:4:G:0:T:0:N:0:O:0	A:146:C:0:G:0:T:0:N:0:O:0	3,51,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25362	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	158	22	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:158:T:0:N:0:O:0	2,21,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	158	22	20	0.03333333333333333	0.0	A:116:C:0:G:0:T:4:N:0:O:0	A:158:C:0:G:0:T:0:N:0:O:0	4,52,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25509	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	158	22	20	0.025423728813559324	0.0	A:0:C:114:G:0:T:3:N:0:O:1	A:1:C:157:G:0:T:0:N:0:O:0	0,58,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25546	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	158	22	20	0.03305785123966942	0.03164556962025317	A:0:C:116:G:0:T:4:N:0:O:1	A:0:C:153:G:0:T:5:N:0:O:0	1,62,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	158	22	20	0.02	0.0	A:0:C:1:G:2:T:96:N:0:O:1	A:0:C:0:G:0:T:158:N:0:O:0	2,36,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	119	158	22	20	1.0	1.0	A:0:C:0:G:0:T:119:N:0:O:0	A:0:C:0:G:0:T:158:N:0:O:0	43,43,76,76	420.0	2000.0	yes	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	171	22	20	0.03125	0.0	A:2:C:0:G:62:T:0:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	2,20,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	171	22	20	0.046153846153846156	0.0	A:3:C:2:G:59:T:0:N:0:O:1	A:0:C:0:G:171:T:0:N:0:O:0	3,20,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	171	22	20	0.020202020202020204	0.0	A:0:C:89:G:0:T:2:N:0:O:8	A:0:C:171:G:0:T:0:N:0:O:0	2,60,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	172	22	20	0.0390625	0.0	A:5:C:94:G:0:T:0:N:0:O:29	A:0:C:171:G:0:T:0:N:0:O:1	5,68,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	171	22	20	0.06172839506172839	0.0	A:73:C:5:G:0:T:0:N:0:O:3	A:171:C:0:G:0:T:0:N:0:O:0	3,43,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	171	22	20	0.0423728813559322	0.0	A:0:C:112:G:0:T:5:N:0:O:1	A:0:C:171:G:0:T:0:N:0:O:0	0,84,5,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	171	22	20	0.0379746835443038	0.0	A:74:C:0:G:3:T:0:N:0:O:2	A:171:C:0:G:0:T:0:N:0:O:0	3,37,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	79	171	22	20	0.02531645569620253	0.0	A:76:C:2:G:0:T:0:N:0:O:1	A:171:C:0:G:0:T:0:N:0:O:0	2,30,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26348	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	178	22	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	1,56,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	177	22	20	0.027777777777777776	0.0	A:0:C:2:G:0:T:70:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,52,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	178	22	20	0.033707865168539325	0.0	A:3:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	3,42,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	241	351	22	20	0.04564315352697095	0.002849002849002849	A:0:C:228:G:0:T:11:N:0:O:2	A:2:C:348:G:0:T:1:N:0:O:0	0,207,11,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	263	354	22	20	0.022813688212927757	0.0	A:0:C:6:G:0:T:257:N:0:O:0	A:0:C:0:G:0:T:354:N:0:O:0	0,216,6,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	184	22	20	0.033112582781456956	0.0	A:141:C:0:G:5:T:0:N:0:O:5	A:184:C:0:G:0:T:0:N:0:O:0	5,98,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	184	22	20	0.023622047244094488	0.0	A:0:C:121:G:0:T:3:N:0:O:3	A:0:C:184:G:0:T:0:N:0:O:0	3,81,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	184	22	20	0.16666666666666666	0.0	A:16:C:0:G:79:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	16,29,0,67	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	184	22	20	0.034482758620689655	0.0	A:0:C:139:G:0:T:5:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,124,5,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	180	22	20	0.02097902097902098	0.0	A:137:C:0:G:3:T:1:N:0:O:2	A:179:C:0:G:0:T:0:N:0:O:1	3,83,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	163	22	20	0.14457831325301204	0.0	A:0:C:71:G:0:T:12:N:0:O:0	A:0:C:163:G:0:T:0:N:0:O:0	0,55,12,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	163	22	20	0.034482758620689655	0.0	A:0:C:83:G:0:T:3:N:0:O:1	A:0:C:163:G:0:T:0:N:0:O:0	0,57,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27224	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	124	22	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:124:C:0:G:0:T:0:N:0:O:0	2,25,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	124	22	20	0.02564102564102564	0.0	A:0:C:3:G:0:T:114:N:0:O:0	A:0:C:0:G:0:T:124:N:0:O:0	0,63,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	124	22	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:106:N:0:O:1	A:0:C:0:G:0:T:124:N:0:O:0	0,60,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	124	22	20	0.02054794520547945	0.0	A:0:C:134:G:0:T:3:N:0:O:9	A:1:C:123:G:0:T:0:N:0:O:0	0,66,3,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	182	22	20	0.02830188679245283	0.0	A:103:C:0:G:3:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	3,48,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	89	22	20	0.02912621359223301	0.0	A:3:C:0:G:100:T:0:N:0:O:0	A:0:C:0:G:88:T:1:N:0:O:0	3,40,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	89	22	20	0.027522935779816515	0.0	A:106:C:0:G:3:T:0:N:0:O:0	A:89:C:0:G:0:T:0:N:0:O:0	3,44,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	89	22	20	0.02727272727272727	0.0	A:0:C:103:G:0:T:3:N:0:O:4	A:0:C:89:G:0:T:0:N:0:O:0	0,80,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28122	G	A	G	16	ignore low frequency variant	Pass	False	False	True	199	186	22	20	0.02512562814070352	0.0	A:5:C:0:G:193:T:0:N:0:O:1	A:0:C:0:G:186:T:0:N:0:O:0	5,88,0,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	97	22	20	0.019230769230769232	0.0	A:2:C:96:G:0:T:0:N:0:O:6	A:0:C:97:G:0:T:0:N:0:O:0	1,64,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	99	22	20	0.028985507246376812	0.0	A:62:C:0:G:2:T:0:N:0:O:5	A:98:C:0:G:0:T:0:N:0:O:1	2,14,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	164	167	22	20	0.018292682926829267	0.0	A:0:C:0:G:3:T:126:N:0:O:35	A:0:C:0:G:0:T:167:N:0:O:0	0,60,3,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	167	22	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:167:T:0:N:0:O:0	0,58,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	167	22	20	0.02654867256637168	0.0	A:0:C:110:G:0:T:3:N:0:O:0	A:0:C:167:G:0:T:0:N:0:O:0	0,51,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	167	22	20	0.030303030303030304	0.0	A:0:C:122:G:0:T:4:N:0:O:6	A:0:C:167:G:0:T:0:N:0:O:0	0,62,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	229	22	20	0.02702702702702703	0.0	A:0:C:72:G:0:T:2:N:0:O:0	A:0:C:229:G:0:T:0:N:0:O:0	0,33,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	229	22	20	0.07079646017699115	0.0	A:8:C:0:G:105:T:0:N:0:O:0	A:0:C:0:G:229:T:0:N:0:O:0	8,16,0,97	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	308	22	20	0.04201680672268908	0.0	A:0:C:111:G:0:T:5:N:0:O:3	A:0:C:308:G:0:T:0:N:0:O:0	0,109,5,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	177	22	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:176:T:1:N:0:O:0	2,55,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	177	22	20	0.04807692307692308	0.0	A:0:C:5:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:177:N:0:O:0	0,67,5,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	177	22	20	0.03333333333333333	0.0	A:0:C:3:G:0:T:84:N:0:O:3	A:0:C:0:G:0:T:177:N:0:O:0	0,66,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	194	22	20	0.02	0.005154639175257732	A:96:C:0:G:2:T:0:N:0:O:2	A:193:C:0:G:1:T:0:N:0:O:0	1,49,1,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	200	22	20	0.04081632653061224	0.0	A:94:C:0:G:4:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	3,32,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	200	22	20	0.02	0.0	A:3:C:0:G:143:T:0:N:0:O:4	A:0:C:0:G:199:T:1:N:0:O:0	3,61,0,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	157	199	22	20	0.03184713375796178	0.0	A:151:C:5:G:0:T:0:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	0,71,5,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	29497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	200	22	20	0.02142857142857143	0.0	A:137:C:0:G:3:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	3,55,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00033	artic-pipeline	NB07	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00033	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	22	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	67	178	38	20	0.9552238805970149	0.9943820224719101	A:0:C:0:G:0:T:64:N:0:O:3	A:1:C:0:G:0:T:177:N:0:O:0	30,33,34,34	70.0	1292.4	yes	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	178	38	20	0.04081632653061224	0.0	A:2:C:0:G:0:T:45:N:0:O:2	A:0:C:0:G:0:T:178:N:0:O:0	2,13,0,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	178	38	20	0.0425531914893617	0.0	A:0:C:42:G:0:T:2:N:0:O:3	A:0:C:178:G:0:T:0:N:0:O:0	2,12,0,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	608	C	A	C	16	ignore low frequency variant	Pass	False	False	True	139	219	38	20	0.02158273381294964	0.0	A:3:C:135:G:0:T:0:N:0:O:1	A:0:C:219:G:0:T:0:N:0:O:0	0,61,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	778	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	164	38	20	0.02127659574468085	0.0	A:2:C:0:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,48,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	164	38	20	0.03409090909090909	0.0	A:3:C:0:G:83:T:0:N:0:O:2	A:0:C:0:G:162:T:2:N:0:O:0	0,32,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	818	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	164	38	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,49,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	144	169	38	20	1.0	1.0	A:0:C:0:G:0:T:144:N:0:O:0	A:0:C:0:G:0:T:169:N:0:O:0	106,106,38,38	70.0	1635.1	yes	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	169	38	20	0.023076923076923078	0.0	A:3:C:124:G:0:T:1:N:0:O:2	A:0:C:169:G:0:T:0:N:0:O:0	3,91,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	169	38	20	0.02054794520547945	0.0	A:130:C:0:G:0:T:3:N:0:O:13	A:169:C:0:G:0:T:0:N:0:O:0	3,110,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	169	38	20	0.031578947368421054	0.0	A:0:C:86:G:0:T:3:N:0:O:6	A:0:C:169:G:0:T:0:N:0:O:0	0,70,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	169	38	20	0.024193548387096774	0.0	A:3:C:0:G:96:T:0:N:0:O:25	A:0:C:0:G:169:T:0:N:0:O:0	3,76,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	169	38	20	0.02127659574468085	0.0	A:1:C:0:G:40:T:0:N:0:O:6	A:0:C:0:G:169:T:0:N:0:O:0	1,14,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	169	38	20	0.046511627906976744	0.0	A:4:C:0:G:71:T:0:N:0:O:11	A:0:C:0:G:169:T:0:N:0:O:0	4,50,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	169	38	20	0.030303030303030304	0.0	A:2:C:0:G:63:T:0:N:0:O:1	A:0:C:0:G:169:T:0:N:0:O:0	2,31,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	233	325	38	20	0.02575107296137339	0.0	A:6:C:1:G:226:T:0:N:0:O:0	A:0:C:0:G:325:T:0:N:0:O:0	5,100,1,133	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1405	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	245	38	20	0.022900763358778626	0.0	A:0:C:3:G:1:T:116:N:0:O:11	A:0:C:0:G:0:T:245:N:0:O:0	0,37,3,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	245	38	20	0.04	0.0	A:0:C:95:G:0:T:4:N:0:O:1	A:0:C:245:G:0:T:0:N:0:O:0	0,38,4,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1546	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	195	38	20	0.02702702702702703	0.0	A:0:C:3:G:0:T:107:N:0:O:1	A:0:C:0:G:0:T:195:N:0:O:0	0,28,3,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	166	38	20	0.0196078431372549	0.0	A:0:C:2:G:0:T:97:N:0:O:3	A:0:C:0:G:0:T:166:N:0:O:0	0,60,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	166	38	20	0.022222222222222223	0.0	A:3:C:0:G:132:T:0:N:0:O:0	A:0:C:0:G:166:T:0:N:0:O:0	0,58,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	165	38	20	0.025423728813559324	0.0	A:115:C:0:G:3:T:0:N:0:O:0	A:165:C:0:G:0:T:0:N:0:O:0	0,57,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	167	38	20	0.02158273381294964	0.0	A:0:C:135:G:0:T:3:N:0:O:1	A:0:C:167:G:0:T:0:N:0:O:0	0,75,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	167	38	20	0.02586206896551724	0.0	A:0:C:3:G:0:T:112:N:0:O:1	A:0:C:0:G:0:T:167:N:0:O:0	0,54,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	168	38	20	0.023809523809523808	0.0	A:81:C:2:G:0:T:0:N:0:O:1	A:168:C:0:G:0:T:0:N:0:O:0	0,51,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	168	38	20	0.041237113402061855	0.0	A:4:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:168:T:0:N:0:O:0	4,16,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	2234	T	G	T	16	ignore low frequency variant	Pass	False	False	True	284	341	38	20	0.03169014084507042	0.0	A:0:C:0:G:9:T:236:N:0:O:39	A:0:C:0:G:0:T:341:N:0:O:0	4,86,5,198	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2235	G	A	G	16	ignore low frequency variant	Pass	False	False	True	162	342	38	20	0.07407407407407407	0.0	A:12:C:0:G:149:T:0:N:0:O:1	A:0:C:1:G:340:T:1:N:0:O:0	6,76,6,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2236	T	A	T	16	ignore low frequency variant	Pass	False	False	True	180	341	38	20	0.05	0.0	A:9:C:0:G:3:T:168:N:0:O:0	A:0:C:0:G:0:T:341:N:0:O:0	3,93,6,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2340	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	183	38	20	0.027777777777777776	0.0	A:0:C:101:G:0:T:3:N:0:O:4	A:0:C:183:G:0:T:0:N:0:O:0	0,38,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	183	38	20	0.03305785123966942	0.0	A:117:C:0:G:4:T:0:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	4,46,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	2886	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	169	38	20	0.023255813953488372	0.0	A:0:C:3:G:0:T:122:N:0:O:4	A:0:C:0:G:0:T:169:N:0:O:0	0,49,3,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	129	169	38	20	0.7209302325581395	1.0	A:0:C:0:G:0:T:93:N:0:O:36	A:0:C:0:G:0:T:169:N:0:O:0	30,66,63,63	195.05	1379.2	yes	.	.	.	mixed position	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	3040	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	169	38	20	0.026785714285714284	0.0	A:3:C:107:G:0:T:0:N:0:O:2	A:0:C:169:G:0:T:0:N:0:O:0	0,46,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	169	38	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:88:N:0:O:5	A:0:C:0:G:0:T:169:N:0:O:0	0,42,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	105	169	38	20	0.05714285714285714	0.005917159763313609	A:0:C:0:G:88:T:6:N:0:O:11	A:0:C:0:G:168:T:1:N:0:O:0	0,49,6,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	173	38	20	0.03614457831325301	0.0	A:0:C:3:G:0:T:80:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,42,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	173	38	20	0.05747126436781609	0.0	A:0:C:79:G:0:T:5:N:0:O:3	A:0:C:173:G:0:T:0:N:0:O:0	0,37,5,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	175	38	20	0.1134020618556701	0.0	A:0:C:86:G:0:T:11:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,60,11,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3721	T	C	T	16	ignore low frequency variant	Pass	False	False	True	148	175	38	20	0.02027027027027027	0.0	A:0:C:3:G:0:T:145:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,65,3,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	178	38	20	0.046511627906976744	0.0	A:4:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	0,47,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	178	38	20	0.07936507936507936	0.0	A:0:C:58:G:0:T:5:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	0,42,5,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	178	38	20	0.05263157894736842	0.0	A:0:C:72:G:0:T:4:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	0,42,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	4158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	176	38	20	0.13761467889908258	0.07386363636363637	A:0:C:94:G:0:T:15:N:0:O:0	A:0:C:163:G:0:T:13:N:0:O:0	10,34,5,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	176	38	20	0.02197802197802198	0.0	A:89:C:2:G:0:T:0:N:0:O:0	A:174:C:0:G:0:T:2:N:0:O:0	2,17,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	176	38	20	0.021739130434782608	0.0	A:0:C:43:G:0:T:1:N:0:O:2	A:0:C:176:G:0:T:0:N:0:O:0	0,31,1,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	176	38	20	0.020618556701030927	0.011363636363636364	A:94:C:0:G:2:T:0:N:0:O:1	A:174:C:0:G:2:T:0:N:0:O:0	0,28,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	186	365	38	20	0.03225806451612903	0.0	A:0:C:0:G:176:T:6:N:0:O:4	A:1:C:0:G:364:T:0:N:0:O:0	0,114,6,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	365	38	20	0.019230769230769232	0.0	A:1:C:96:G:0:T:2:N:0:O:5	A:0:C:365:G:0:T:0:N:0:O:0	0,55,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	4486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	189	38	20	0.024096385542168676	0.0	A:2:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	2,41,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	4578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	189	38	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:74:N:0:O:15	A:0:C:0:G:0:T:189:N:0:O:0	2,36,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	184	38	20	0.032	0.0	A:0:C:0:G:4:T:113:N:0:O:8	A:0:C:1:G:0:T:183:N:0:O:0	0,84,4,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5100	C	A	N	18	ambiguous base in consensus	Check	False	False	False	57	193	38	20	0.017543859649122806	0.0	A:1:C:37:G:0:T:0:N:0:O:19	A:0:C:193:G:0:T:0:N:0:O:0	0,51,1,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	193	38	20	0.041237113402061855	0.0	A:0:C:93:G:0:T:4:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,30,4,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	177	38	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	3,60,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	177	38	20	0.031914893617021274	0.0	A:3:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:177:T:0:N:0:O:0	0,47,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	187	38	20	0.07894736842105263	0.0	A:0:C:70:G:0:T:6:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,62,6,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	187	38	20	0.024390243902439025	0.0	A:0:C:2:G:0:T:76:N:0:O:4	A:0:C:0:G:0:T:187:N:0:O:0	0,59,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	187	38	20	0.022388059701492536	0.0	A:3:C:0:G:118:T:0:N:0:O:13	A:0:C:0:G:187:T:0:N:0:O:0	1,59,2,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	186	38	20	0.02564102564102564	0.0	A:0:C:65:G:0:T:2:N:0:O:11	A:0:C:186:G:0:T:0:N:0:O:0	0,64,2,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	186	38	20	0.028037383177570093	0.0	A:0:C:99:G:0:T:3:N:0:O:5	A:1:C:185:G:0:T:0:N:0:O:0	0,50,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	186	38	20	0.1744186046511628	0.0	A:0:C:70:G:0:T:15:N:0:O:1	A:0:C:186:G:0:T:0:N:0:O:0	0,47,15,39	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	114	38	20	0.030612244897959183	0.0	A:0:C:94:G:0:T:3:N:0:O:1	A:0:C:114:G:0:T:0:N:0:O:0	0,65,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	114	38	20	0.034482758620689655	0.0	A:0:C:111:G:0:T:4:N:0:O:1	A:0:C:114:G:0:T:0:N:0:O:0	0,66,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	114	38	20	0.024096385542168676	0.0	A:0:C:0:G:81:T:2:N:0:O:0	A:0:C:0:G:114:T:0:N:0:O:0	0,18,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	114	38	20	0.02912621359223301	0.0	A:0:C:3:G:0:T:100:N:0:O:0	A:0:C:0:G:0:T:114:N:0:O:0	0,61,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	114	38	20	0.03529411764705882	0.0	A:3:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:114:T:0:N:0:O:0	3,31,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	194	38	20	0.020202020202020204	0.0	A:0:C:94:G:0:T:2:N:0:O:3	A:0:C:194:G:0:T:0:N:0:O:0	0,48,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	243	38	20	0.03669724770642202	0.0	A:4:C:0:G:102:T:0:N:0:O:3	A:0:C:0:G:243:T:0:N:0:O:0	4,24,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6784	T	A	T	16	ignore low frequency variant	Pass	False	False	True	190	228	38	20	0.021052631578947368	0.0	A:4:C:0:G:0:T:186:N:0:O:0	A:0:C:0:G:0:T:228:N:0:O:0	0,70,4,120	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	185	228	38	20	0.021621621621621623	0.0	A:170:C:0:G:4:T:2:N:0:O:9	A:228:C:0:G:0:T:0:N:0:O:0	4,51,0,134	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	168	227	38	20	0.05357142857142857	0.0	A:0:C:151:G:0:T:9:N:0:O:8	A:0:C:227:G:0:T:0:N:0:O:0	0,87,9,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	207	38	20	0.022727272727272728	0.0	A:2:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:207:T:0:N:0:O:0	2,17,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	6894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	207	38	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:207:T:0:N:0:O:0	2,13,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	207	38	20	0.022727272727272728	0.0	A:0:C:86:G:0:T:2:N:0:O:0	A:1:C:206:G:0:T:0:N:0:O:0	0,44,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	68	197	38	20	0.04411764705882353	0.0	A:61:C:0:G:0:T:3:N:0:O:4	A:197:C:0:G:0:T:0:N:0:O:0	0,50,3,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	7269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	163	38	20	0.024793388429752067	0.0	A:0:C:118:G:0:T:3:N:0:O:0	A:0:C:163:G:0:T:0:N:0:O:0	1,84,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	173	38	20	0.07317073170731707	0.0	A:6:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:173:T:0:N:0:O:0	6,21,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	173	38	20	0.03614457831325301	0.0	A:1:C:79:G:0:T:3:N:0:O:0	A:0:C:173:G:0:T:0:N:0:O:0	3,26,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	201	38	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:201:C:0:G:0:T:0:N:0:O:0	2,57,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	202	38	20	0.03225806451612903	0.0	A:0:C:4:G:0:T:120:N:0:O:0	A:0:C:0:G:0:T:202:N:0:O:0	0,82,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	172	38	20	0.020833333333333332	0.0	A:0:C:91:G:0:T:2:N:0:O:3	A:0:C:172:G:0:T:0:N:0:O:0	0,51,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	172	38	20	0.04411764705882353	0.0	A:3:C:0:G:64:T:0:N:0:O:1	A:0:C:0:G:172:T:0:N:0:O:0	3,3,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	192	38	20	0.02666666666666667	0.0	A:0:C:69:G:0:T:2:N:0:O:4	A:0:C:192:G:0:T:0:N:0:O:0	0,31,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	185	38	20	0.0273972602739726	0.0	A:0:C:2:G:0:T:71:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	2,48,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	185	38	20	0.02040816326530612	0.0	A:0:C:90:G:0:T:2:N:0:O:6	A:0:C:185:G:0:T:0:N:0:O:0	0,76,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	177	38	20	0.034482758620689655	0.0	A:2:C:0:G:55:T:0:N:0:O:1	A:0:C:0:G:177:T:0:N:0:O:0	2,10,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	177	38	20	0.027777777777777776	0.0	A:0:C:64:G:0:T:2:N:0:O:6	A:1:C:176:G:0:T:0:N:0:O:0	2,16,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10011	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	177	38	20	0.02608695652173913	0.0	A:0:C:3:G:0:T:111:N:0:O:1	A:0:C:0:G:0:T:177:N:0:O:0	0,59,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10305	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	132	38	20	0.022727272727272728	0.0	A:85:C:0:G:1:T:2:N:0:O:0	A:132:C:0:G:0:T:0:N:0:O:0	2,55,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	132	38	20	0.027777777777777776	0.0	A:2:C:0:G:69:T:0:N:0:O:1	A:0:C:0:G:132:T:0:N:0:O:0	2,37,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	176	38	20	0.039603960396039604	0.0	A:0:C:93:G:0:T:4:N:0:O:4	A:0:C:176:G:0:T:0:N:0:O:0	0,65,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	176	38	20	0.036036036036036036	0.0	A:0:C:107:G:0:T:4:N:0:O:0	A:0:C:176:G:0:T:0:N:0:O:0	0,62,4,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	176	38	20	0.023809523809523808	0.0	A:123:C:0:G:3:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	3,51,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	176	38	20	0.0423728813559322	0.0	A:113:C:0:G:5:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	5,46,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	176	38	20	0.024096385542168676	0.0	A:0:C:2:G:0:T:81:N:0:O:0	A:0:C:0:G:0:T:176:N:0:O:0	1,49,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	176	38	20	0.03418803418803419	0.005681818181818182	A:0:C:0:G:112:T:4:N:0:O:1	A:0:C:0:G:175:T:1:N:0:O:0	4,60,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	182	38	20	0.0898876404494382	0.0	A:0:C:79:G:0:T:8:N:0:O:2	A:0:C:182:G:0:T:0:N:0:O:0	0,57,8,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	182	38	20	0.021052631578947368	0.0	A:2:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:182:T:0:N:0:O:0	2,18,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	180	38	20	0.046296296296296294	0.0	A:0:C:0:G:5:T:100:N:0:O:3	A:0:C:0:G:0:T:180:N:0:O:0	0,53,5,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	182	38	20	0.02459016393442623	0.0	A:3:C:113:G:0:T:0:N:0:O:6	A:0:C:182:G:0:T:0:N:0:O:0	3,53,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11081	T	G	T	1	near depth threshold	Alarm	False	False	True	33	147	38	20	0.030303030303030304	0.0	A:0:C:0:G:1:T:31:N:0:O:1	A:0:C:0:G:0:T:147:N:0:O:0	1,16,0,17	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11332	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	353	38	20	0.026490066225165563	0.0	A:146:C:0:G:4:T:0:N:0:O:1	A:353:C:0:G:0:T:0:N:0:O:0	4,81,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11386	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	189	38	20	0.02631578947368421	0.0	A:70:C:0:G:2:T:0:N:0:O:4	A:189:C:0:G:0:T:0:N:0:O:0	2,34,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11395	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	189	38	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,52,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	189	38	20	0.02247191011235955	0.0	A:87:C:0:G:0:T:2:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,60,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	189	38	20	0.042105263157894736	0.0	A:91:C:0:G:4:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	4,57,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11703	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	189	38	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,59,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11733	T	A	T	16	ignore low frequency variant	Pass	False	False	True	53	189	38	20	0.03773584905660377	0.0	A:2:C:0:G:0:T:50:N:0:O:1	A:0:C:0:G:0:T:189:N:0:O:0	2,22,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11747	C	G	C	16	ignore low frequency variant	Pass	False	False	True	97	189	38	20	0.020618556701030927	0.0	A:0:C:95:G:2:T:0:N:0:O:0	A:0:C:188:G:0:T:1:N:0:O:0	2,64,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	189	38	20	0.023255813953488372	0.0	A:83:C:0:G:1:T:2:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,54,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	179	175	38	20	0.01675977653631285	0.0	A:1:C:0:G:112:T:3:N:0:O:63	A:0:C:0:G:175:T:0:N:0:O:0	1,58,2,121	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	175	38	20	0.07407407407407407	0.0	A:50:C:0:G:4:T:0:N:0:O:0	A:175:C:0:G:0:T:0:N:0:O:0	2,37,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	175	38	20	0.03409090909090909	0.0	A:0:C:0:G:85:T:3:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	0,34,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	176	38	20	0.025974025974025976	0.0	A:0:C:59:G:0:T:2:N:0:O:16	A:0:C:175:G:0:T:0:N:0:O:1	0,58,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	197	354	38	20	0.030456852791878174	0.0	A:0:C:190:G:0:T:6:N:0:O:1	A:0:C:354:G:0:T:0:N:0:O:0	0,98,6,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	179	38	20	0.02197802197802198	0.0	A:87:C:0:G:2:T:0:N:0:O:2	A:179:C:0:G:0:T:0:N:0:O:0	2,45,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	179	38	20	0.034482758620689655	0.0	A:3:C:0:G:67:T:0:N:0:O:17	A:0:C:0:G:179:T:0:N:0:O:0	0,66,3,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	159	38	20	0.054945054945054944	0.0	A:0:C:84:G:0:T:5:N:0:O:2	A:0:C:159:G:0:T:0:N:0:O:0	0,67,5,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	172	38	20	0.025423728813559324	0.0	A:3:C:0:G:0:T:113:N:0:O:2	A:0:C:0:G:0:T:172:N:0:O:0	3,47,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	172	38	20	0.03418803418803419	0.0	A:4:C:0:G:108:T:0:N:0:O:5	A:0:C:0:G:172:T:0:N:0:O:0	4,35,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	172	38	20	0.018691588785046728	0.0	A:97:C:0:G:2:T:0:N:0:O:8	A:172:C:0:G:0:T:0:N:0:O:0	2,28,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	172	38	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	0,45,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13117	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	145	38	20	0.022388059701492536	0.0	A:131:C:0:G:3:T:0:N:0:O:0	A:145:C:0:G:0:T:0:N:0:O:0	3,69,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	145	38	20	0.022556390977443608	0.0	A:3:C:0:G:124:T:0:N:0:O:6	A:0:C:0:G:145:T:0:N:0:O:0	3,65,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	170	38	20	0.02857142857142857	0.0	A:2:C:0:G:67:T:0:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	1,37,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	169	38	20	0.022222222222222223	0.0	A:2:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:168:T:1:N:0:O:0	2,41,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	169	38	20	0.031746031746031744	0.0	A:0:C:61:G:0:T:2:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,58,2,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13484	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	169	38	20	0.0273972602739726	0.0	A:2:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:169:T:0:N:0:O:0	2,53,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13486	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	169	38	20	0.023255813953488372	0.0	A:1:C:0:G:83:T:2:N:0:O:0	A:0:C:0:G:169:T:0:N:0:O:0	2,55,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	169	38	20	0.041237113402061855	0.0	A:4:C:0:G:83:T:0:N:0:O:10	A:0:C:0:G:169:T:0:N:0:O:0	4,44,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	169	38	20	0.029411764705882353	0.0	A:0:C:66:G:0:T:2:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,47,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	171	38	20	0.02197802197802198	0.0	A:0:C:89:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,50,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	140	170	38	20	0.02142857142857143	0.0	A:3:C:0:G:0:T:113:N:0:O:24	A:0:C:0:G:0:T:170:N:0:O:0	1,72,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	153	38	20	0.024390243902439025	0.0	A:2:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:153:T:0:N:0:O:0	2,30,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	153	38	20	0.02459016393442623	0.0	A:3:C:0:G:116:T:0:N:0:O:3	A:0:C:0:G:152:T:1:N:0:O:0	3,57,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	171	38	20	0.03225806451612903	0.0	A:3:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	3,29,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	111	191	38	20	0.990990990990991	1.0	A:0:C:0:G:0:T:110:N:0:O:1	A:0:C:0:G:0:T:191:N:0:O:0	62,63,48,48	324.952	1416.8	yes	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	191	38	20	0.0297029702970297	0.0	A:3:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:191:T:0:N:0:O:0	3,38,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	194	38	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	2,51,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.029411764705882353	0.005154639175257732	A:96:C:0:G:3:T:0:N:0:O:3	A:193:C:0:G:1:T:0:N:0:O:0	3,75,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	60	169	38	20	0.08333333333333333	0.0	A:0:C:5:G:0:T:54:N:0:O:1	A:0:C:0:G:0:T:169:N:0:O:0	0,47,5,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	169	38	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:169:N:0:O:0	1,30,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	342	38	20	0.024096385542168676	0.0	A:0:C:138:G:0:T:4:N:0:O:24	A:0:C:342:G:0:T:0:N:0:O:0	0,128,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	15288	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	178	38	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:0	0,50,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	178	38	20	0.04054054054054054	0.0	A:3:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	3,17,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15360	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	178	38	20	0.03	0.0	A:0:C:95:G:0:T:3:N:0:O:2	A:0:C:178:G:0:T:0:N:0:O:0	3,27,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15616	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	194	38	20	0.024390243902439025	0.0	A:117:C:0:G:3:T:0:N:0:O:3	A:194:C:0:G:0:T:0:N:0:O:0	3,65,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15617	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	194	38	20	0.023076923076923078	0.0	A:3:C:0:G:126:T:0:N:0:O:1	A:0:C:0:G:193:T:1:N:0:O:0	3,66,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	194	38	20	0.027777777777777776	0.0	A:0:C:0:G:104:T:3:N:0:O:1	A:0:C:0:G:194:T:0:N:0:O:0	0,73,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	195	38	20	0.06153846153846154	0.0	A:0:C:61:G:0:T:4:N:0:O:0	A:1:C:194:G:0:T:0:N:0:O:0	0,27,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	16000	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	195	38	20	0.0449438202247191	0.0	A:0:C:82:G:0:T:4:N:0:O:3	A:0:C:195:G:0:T:0:N:0:O:0	0,8,4,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	195	38	20	0.05	0.0	A:0:C:75:G:0:T:4:N:0:O:1	A:0:C:195:G:0:T:0:N:0:O:0	0,37,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	16309	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	195	38	20	0.022556390977443608	0.0	A:0:C:3:G:0:T:128:N:0:O:2	A:0:C:0:G:0:T:195:N:0:O:0	1,82,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	193	38	20	0.028037383177570093	0.0	A:0:C:0:G:101:T:3:N:0:O:3	A:0:C:0:G:193:T:0:N:0:O:0	2,57,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	195	38	20	0.034482758620689655	0.0	A:0:C:112:G:0:T:4:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,85,4,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	193	38	20	0.06593406593406594	0.0051813471502590676	A:6:C:0:G:82:T:0:N:0:O:3	A:1:C:0:G:192:T:0:N:0:O:0	6,33,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	175	38	20	0.0625	0.0	A:0:C:5:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,25,5,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	175	38	20	0.05063291139240506	0.0	A:0:C:0:G:4:T:75:N:0:O:0	A:0:C:2:G:0:T:173:N:0:O:0	0,26,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16837	G	T	G	16	ignore low frequency variant	Pass	False	False	True	170	176	38	20	0.029411764705882353	0.0	A:0:C:0:G:128:T:5:N:0:O:37	A:0:C:0:G:175:T:0:N:0:O:1	1,38,4,132	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	174	38	20	0.054945054945054944	0.0	A:86:C:0:G:5:T:0:N:0:O:0	A:174:C:0:G:0:T:0:N:0:O:0	0,15,5,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	175	38	20	0.020202020202020204	0.0	A:0:C:89:G:0:T:2:N:0:O:8	A:0:C:175:G:0:T:0:N:0:O:0	0,29,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	175	38	20	0.025	0.0	A:76:C:0:G:2:T:0:N:0:O:2	A:175:C:0:G:0:T:0:N:0:O:0	0,17,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17192	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	158	38	20	0.022727272727272728	0.0	A:83:C:0:G:0:T:2:N:0:O:3	A:157:C:1:G:0:T:0:N:0:O:0	2,31,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	158	38	20	0.04477611940298507	0.0	A:3:C:0:G:63:T:0:N:0:O:1	A:0:C:0:G:158:T:0:N:0:O:0	3,12,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	158	38	20	0.06060606060606061	0.0	A:4:C:0:G:61:T:0:N:0:O:1	A:0:C:0:G:158:T:0:N:0:O:0	4,11,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	158	38	20	0.02631578947368421	0.0	A:2:C:0:G:0:T:68:N:0:O:6	A:0:C:0:G:0:T:158:N:0:O:0	2,24,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	143	38	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:143:T:0:N:0:O:0	1,24,1,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	143	38	20	0.036585365853658534	0.0	A:0:C:75:G:0:T:3:N:0:O:4	A:0:C:143:G:0:T:0:N:0:O:0	0,42,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	143	38	20	0.05042016806722689	0.0	A:6:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:143:T:0:N:0:O:0	6,28,0,91	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	215	323	38	20	0.03255813953488372	0.0	A:0:C:194:G:0:T:7:N:0:O:14	A:1:C:322:G:0:T:0:N:0:O:0	0,75,7,140	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	187	38	20	0.16129032258064516	0.0	A:0:C:52:G:0:T:10:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,20,10,42	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	187	38	20	0.0784313725490196	0.0	A:84:C:0:G:0:T:8:N:0:O:10	A:187:C:0:G:0:T:0:N:0:O:0	0,23,8,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	187	38	20	0.10526315789473684	0.0	A:10:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:187:T:0:N:0:O:0	0,29,10,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	187	38	20	0.022222222222222223	0.0	A:0:C:78:G:0:T:2:N:0:O:10	A:0:C:187:G:0:T:0:N:0:O:0	0,37,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	155	38	20	0.023622047244094488	0.0064516129032258064	A:0:C:3:G:0:T:123:N:0:O:1	A:0:C:1:G:0:T:154:N:0:O:0	0,48,3,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18158	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	156	38	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:156:N:0:O:0	0,48,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18245	A	T	A	16	ignore low frequency variant	Pass	False	False	True	153	156	38	20	0.0196078431372549	0.0	A:140:C:0:G:1:T:3:N:0:O:9	A:156:C:0:G:0:T:0:N:0:O:0	2,43,1,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	197	346	38	20	0.030456852791878174	0.0	A:6:C:0:G:188:T:0:N:0:O:3	A:0:C:0:G:346:T:0:N:0:O:0	6,13,0,184	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	194	38	20	0.040983606557377046	0.0	A:0:C:116:G:0:T:5:N:0:O:1	A:0:C:194:G:0:T:0:N:0:O:0	0,65,5,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18365	T	C	T	16	ignore low frequency variant	Pass	False	False	True	152	194	38	20	0.019736842105263157	0.0	A:0:C:3:G:0:T:146:N:0:O:3	A:0:C:0:G:0:T:194:N:0:O:0	0,77,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	152	194	38	20	0.019736842105263157	0.0	A:1:C:0:G:146:T:3:N:0:O:2	A:0:C:0:G:194:T:0:N:0:O:0	0,80,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18516	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	194	38	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:194:T:0:N:0:O:0	0,78,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	163	38	20	0.023255813953488372	0.0	A:83:C:0:G:2:T:0:N:0:O:1	A:163:C:0:G:0:T:0:N:0:O:0	2,30,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	163	38	20	0.021505376344086023	0.0	A:2:C:0:G:90:T:0:N:0:O:1	A:0:C:0:G:163:T:0:N:0:O:0	2,32,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18731	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	163	38	20	0.02127659574468085	0.0	A:2:C:0:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:163:N:0:O:0	2,34,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	163	38	20	0.028169014084507043	0.0	A:2:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:163:T:0:N:0:O:0	2,16,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	163	38	20	0.021739130434782608	0.0	A:43:C:0:G:0:T:1:N:0:O:2	A:163:C:0:G:0:T:0:N:0:O:0	0,21,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	170	38	20	0.06837606837606838	0.0	A:8:C:0:G:105:T:0:N:0:O:4	A:0:C:0:G:169:T:1:N:0:O:0	8,28,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	238	38	20	0.037037037037037035	0.004201680672268907	A:104:C:0:G:4:T:0:N:0:O:0	A:237:C:0:G:1:T:0:N:0:O:0	4,51,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	19377	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	238	38	20	0.023255813953488372	0.0	A:3:C:0:G:0:T:126:N:0:O:0	A:0:C:0:G:0:T:238:N:0:O:0	2,62,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	237	38	20	0.16666666666666666	0.0	A:0:C:65:G:0:T:13:N:0:O:0	A:0:C:237:G:0:T:0:N:0:O:0	0,55,13,23	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	19653	T	A	T	16	ignore low frequency variant	Pass	False	False	True	135	136	38	20	0.022222222222222223	0.0	A:3:C:0:G:0:T:126:N:0:O:6	A:0:C:0:G:0:T:136:N:0:O:0	3,79,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	154	136	38	20	0.032467532467532464	0.0	A:5:C:1:G:0:T:126:N:0:O:22	A:0:C:0:G:0:T:136:N:0:O:0	1,77,4,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	136	38	20	0.045871559633027525	0.0	A:104:C:0:G:0:T:5:N:0:O:0	A:136:C:0:G:0:T:0:N:0:O:0	1,70,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	189	38	20	0.047619047619047616	0.0	A:0:C:98:G:0:T:5:N:0:O:2	A:1:C:188:G:0:T:0:N:0:O:0	0,36,5,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	189	38	20	0.02608695652173913	0.0	A:0:C:101:G:0:T:3:N:0:O:11	A:0:C:189:G:0:T:0:N:0:O:0	0,42,3,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20263	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	198	38	20	0.01904761904761905	0.0	A:2:C:0:G:97:T:0:N:0:O:6	A:0:C:0:G:198:T:0:N:0:O:0	2,61,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	198	38	20	0.03614457831325301	0.0	A:78:C:0:G:3:T:0:N:0:O:2	A:198:C:0:G:0:T:0:N:0:O:0	3,34,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	20463	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	198	38	20	0.023622047244094488	0.0	A:124:C:0:G:3:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	3,86,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	184	38	20	0.021164021164021163	0.0	A:4:C:0:G:181:T:0:N:0:O:4	A:0:C:0:G:183:T:0:N:0:O:1	4,98,0,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	184	38	20	0.022222222222222223	0.0	A:0:C:126:G:0:T:3:N:0:O:6	A:0:C:184:G:0:T:0:N:0:O:0	3,72,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20886	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	184	38	20	0.025210084033613446	0.0	A:112:C:0:G:3:T:0:N:0:O:4	A:184:C:0:G:0:T:0:N:0:O:0	2,30,1,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20905	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	184	38	20	0.02608695652173913	0.0	A:3:C:0:G:111:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	3,28,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20923	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	184	38	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:90:N:0:O:0	A:1:C:0:G:0:T:183:N:0:O:0	0,47,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	184	38	20	0.03614457831325301	0.0	A:3:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	3,11,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	184	38	20	0.042735042735042736	0.0	A:5:C:0:G:112:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	5,36,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21028	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	184	38	20	0.020689655172413793	0.0	A:3:C:0:G:0:T:130:N:0:O:12	A:0:C:0:G:0:T:184:N:0:O:0	0,46,3,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21029	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	184	38	20	0.024	0.0	A:0:C:0:G:122:T:3:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	0,46,3,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	194	38	20	0.14736842105263157	0.0	A:0:C:0:G:74:T:14:N:0:O:7	A:0:C:0:G:194:T:0:N:0:O:0	0,60,14,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	267	38	20	0.028037383177570093	0.0	A:0:C:104:G:0:T:3:N:0:O:0	A:0:C:267:G:0:T:0:N:0:O:0	0,58,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	267	38	20	0.025974025974025976	0.0	A:2:C:0:G:74:T:0:N:0:O:1	A:0:C:0:G:266:T:1:N:0:O:0	2,61,0,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	61	266	38	20	0.03278688524590164	0.0	A:2:C:1:G:0:T:41:N:0:O:17	A:0:C:0:G:0:T:265:N:0:O:1	2,41,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	189	38	20	0.023809523809523808	0.0	A:0:C:82:G:0:T:2:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,45,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	189	38	20	0.05102040816326531	0.0	A:93:C:0:G:5:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	5,25,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	189	38	20	0.041666666666666664	0.0	A:5:C:0:G:113:T:0:N:0:O:2	A:0:C:0:G:189:T:0:N:0:O:0	5,43,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	190	38	20	0.04285714285714286	0.0	A:0:C:66:G:0:T:3:N:0:O:1	A:0:C:189:G:1:T:0:N:0:O:0	0,45,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	21736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	165	38	20	0.017964071856287425	0.0	A:0:C:144:G:0:T:3:N:0:O:20	A:0:C:165:G:0:T:0:N:0:O:0	0,79,3,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	165	38	20	0.13	0.0	A:0:C:84:G:0:T:13:N:0:O:3	A:1:C:164:G:0:T:0:N:0:O:0	12,23,1,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	165	38	20	0.020618556701030927	0.0	A:0:C:92:G:0:T:2:N:0:O:3	A:0:C:165:G:0:T:0:N:0:O:0	0,74,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	165	38	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	0,72,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	21964	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	165	38	20	0.017699115044247787	0.0	A:97:C:0:G:0:T:2:N:0:O:14	A:165:C:0:G:0:T:0:N:0:O:0	0,84,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22121	A	C	A	16	ignore low frequency variant	Pass	False	False	True	158	177	38	20	0.03164556962025317	0.0	A:153:C:5:G:0:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	5,118,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	177	38	20	0.03773584905660377	0.0	A:0:C:0:G:4:T:101:N:0:O:1	A:0:C:0:G:0:T:177:N:0:O:0	4,51,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	161	177	38	20	0.024844720496894408	0.0	A:0:C:156:G:0:T:4:N:0:O:1	A:0:C:177:G:0:T:0:N:0:O:0	0,121,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	140	38	20	0.030303030303030304	0.0	A:3:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:140:T:0:N:0:O:0	1,41,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22508	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	138	38	20	0.0196078431372549	0.0	A:2:C:0:G:0:T:96:N:0:O:4	A:0:C:0:G:0:T:138:N:0:O:0	2,68,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	138	38	20	0.033707865168539325	0.0	A:0:C:0:G:3:T:85:N:0:O:1	A:1:C:0:G:0:T:137:N:0:O:0	3,20,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	165	38	20	0.03669724770642202	0.0	A:4:C:0:G:105:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	4,39,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	151	183	38	20	0.019867549668874173	0.0	A:0:C:0:G:146:T:3:N:0:O:2	A:0:C:0:G:183:T:0:N:0:O:0	2,83,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	138	179	38	20	0.8840579710144928	1.0	A:0:C:0:G:122:T:0:N:0:O:16	A:0:C:0:G:179:T:0:N:0:O:0	52,68,70,70	140.0	1765.1	yes	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	190	38	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:100:N:0:O:1	A:0:C:0:G:0:T:190:N:0:O:0	0,59,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	194	38	20	0.043010752688172046	0.0	A:0:C:89:G:0:T:4:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,67,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	194	38	20	0.021505376344086023	0.0	A:90:C:0:G:2:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	2,37,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	149	38	20	0.24489795918367346	0.0	A:0:C:74:G:0:T:24:N:0:O:0	A:1:C:148:G:0:T:0:N:0:O:0	0,61,24,37	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	149	38	20	0.03636363636363636	0.040268456375838924	A:0:C:4:G:0:T:106:N:0:O:0	A:0:C:6:G:0:T:143:N:0:O:0	0,61,4,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	166	149	38	20	0.024096385542168676	0.0	A:162:C:0:G:0:T:4:N:0:O:0	A:149:C:0:G:0:T:0:N:0:O:0	4,65,0,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	106	149	38	20	0.03773584905660377	0.0	A:4:C:0:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:149:N:0:O:0	4,20,0,86	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	149	38	20	0.04597701149425287	0.0	A:0:C:82:G:0:T:4:N:0:O:1	A:0:C:149:G:0:T:0:N:0:O:0	0,55,4,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24108	T	C	T	16	ignore low frequency variant	Pass	False	False	True	223	292	38	20	0.03139013452914798	0.0	A:0:C:7:G:0:T:215:N:0:O:1	A:0:C:0:G:0:T:292:N:0:O:0	0,119,7,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24233	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	159	38	20	0.02830188679245283	0.0	A:3:C:0:G:98:T:0:N:0:O:5	A:0:C:0:G:159:T:0:N:0:O:0	3,30,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	159	38	20	0.06060606060606061	0.0	A:0:C:56:G:1:T:4:N:0:O:5	A:0:C:159:G:0:T:0:N:0:O:0	0,59,4,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	159	38	20	0.08490566037735849	0.0	A:9:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:159:T:0:N:0:O:0	9,28,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	159	38	20	0.05263157894736842	0.0	A:5:C:0:G:87:T:0:N:0:O:3	A:0:C:0:G:159:T:0:N:0:O:0	5,17,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	159	38	20	0.023809523809523808	0.0	A:120:C:0:G:3:T:0:N:0:O:3	A:159:C:0:G:0:T:0:N:0:O:0	3,50,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	138	186	38	20	0.028985507246376812	0.0	A:4:C:133:G:0:T:1:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	4,53,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	153	186	38	20	0.026143790849673203	0.0	A:140:C:0:G:0:T:4:N:0:O:9	A:186:C:0:G:0:T:0:N:0:O:0	4,82,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	186	38	20	0.02857142857142857	0.0	A:0:C:61:G:0:T:2:N:0:O:7	A:0:C:186:G:0:T:0:N:0:O:0	0,66,2,4	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	173	38	20	0.023255813953488372	0.0	A:2:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	0,50,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	173	38	20	0.02631578947368421	0.0	A:0:C:0:G:3:T:111:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,76,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25160	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	170	38	20	0.03076923076923077	0.0	A:0:C:126:G:0:T:4:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,81,4,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	112	170	38	20	0.026785714285714284	0.0	A:108:C:3:G:1:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	3,62,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	170	38	20	0.024390243902439025	0.0	A:119:C:0:G:3:T:0:N:0:O:1	A:170:C:0:G:0:T:0:N:0:O:0	2,74,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	171	38	20	0.04	0.0	A:0:C:42:G:0:T:2:N:0:O:6	A:0:C:170:G:0:T:0:N:0:O:1	0,28,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	127	170	38	20	1.0	1.0	A:0:C:0:G:0:T:127:N:0:O:0	A:0:C:0:G:0:T:170:N:0:O:0	23,23,104,104	280.0	1915.3	yes	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	25699	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	181	38	20	0.020202020202020204	0.0	A:2:C:1:G:83:T:0:N:0:O:13	A:0:C:0:G:181:T:0:N:0:O:0	2,45,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	181	38	20	0.02	0.0	A:0:C:93:G:0:T:2:N:0:O:5	A:1:C:180:G:0:T:0:N:0:O:0	0,64,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	181	38	20	0.023529411764705882	0.0	A:2:C:0:G:82:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	2,35,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	181	38	20	0.017094017094017096	0.0	A:2:C:80:G:0:T:0:N:0:O:35	A:0:C:181:G:0:T:0:N:0:O:0	2,51,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	181	38	20	0.04	0.0	A:72:C:3:G:0:T:0:N:0:O:0	A:181:C:0:G:0:T:0:N:0:O:0	2,50,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	181	38	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:181:G:0:T:0:N:0:O:0	0,71,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	181	38	20	0.019417475728155338	0.0055248618784530384	A:93:C:0:G:0:T:2:N:0:O:8	A:180:C:0:G:0:T:1:N:0:O:0	0,84,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	181	38	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	0,67,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	181	38	20	0.02	0.0	A:2:C:0:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	2,55,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	181	38	20	0.04040404040404041	0.0	A:92:C:0:G:4:T:0:N:0:O:3	A:181:C:0:G:0:T:0:N:0:O:0	4,49,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	181	38	20	0.07142857142857142	0.0	A:76:C:0:G:6:T:0:N:0:O:2	A:181:C:0:G:0:T:0:N:0:O:0	6,35,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	181	38	20	0.03409090909090909	0.0	A:0:C:85:G:0:T:3:N:0:O:0	A:0:C:181:G:0:T:0:N:0:O:0	2,57,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	181	38	20	0.03125	0.0	A:3:C:0:G:91:T:0:N:0:O:2	A:0:C:0:G:181:T:0:N:0:O:0	3,45,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	364	38	20	0.02040816326530612	0.0	A:192:C:0:G:4:T:0:N:0:O:0	A:364:C:0:G:0:T:0:N:0:O:0	0,145,4,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	184	38	20	0.016	0.0	A:0:C:89:G:0:T:2:N:0:O:34	A:0:C:184:G:0:T:0:N:0:O:0	0,96,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	171	185	38	20	0.029239766081871343	0.0	A:0:C:115:G:0:T:5:N:0:O:51	A:0:C:184:G:0:T:0:N:0:O:1	0,97,5,74	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	183	38	20	0.028985507246376812	0.0	A:0:C:2:G:0:T:67:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,45,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	184	38	20	0.023529411764705882	0.0	A:0:C:83:G:0:T:2:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	2,28,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	184	38	20	0.0379746835443038	0.0	A:0:C:76:G:0:T:3:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,57,3,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	184	38	20	0.05555555555555555	0.0	A:5:C:0:G:84:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	5,27,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	359	38	20	0.045454545454545456	0.0	A:0:C:168:G:0:T:8:N:0:O:0	A:1:C:358:G:0:T:0:N:0:O:0	0,156,8,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	213	361	38	20	0.03286384976525822	0.0	A:0:C:7:G:0:T:206:N:0:O:0	A:0:C:0:G:0:T:361:N:0:O:0	0,162,7,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26561	T	A	T	16	ignore low frequency variant	Pass	False	False	True	207	359	38	20	0.014492753623188406	0.0	A:3:C:0:G:1:T:138:N:0:O:65	A:0:C:0:G:0:T:358:N:0:O:1	2,82,1,125	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	183	38	20	0.024	0.0	A:0:C:3:G:0:T:122:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,83,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	183	38	20	0.1111111111111111	0.0	A:9:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	9,20,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	183	38	20	0.046296296296296294	0.0	A:0:C:102:G:0:T:5:N:0:O:1	A:0:C:183:G:0:T:0:N:0:O:0	0,84,5,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	176	38	20	0.030303030303030304	0.0	A:3:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:176:T:0:N:0:O:0	3,48,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	145	38	20	0.029411764705882353	0.0	A:98:C:0:G:3:T:0:N:0:O:1	A:145:C:0:G:0:T:0:N:0:O:0	3,47,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	146	38	20	0.022988505747126436	0.0	A:2:C:0:G:84:T:0:N:0:O:1	A:0:C:0:G:146:T:0:N:0:O:0	2,30,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	145	38	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:145:G:0:T:0:N:0:O:0	0,75,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27154	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	145	38	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:145:G:0:T:0:N:0:O:0	2,32,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	186	38	20	0.02158273381294964	0.0	A:0:C:133:G:0:T:3:N:0:O:3	A:0:C:186:G:0:T:0:N:0:O:0	0,96,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	186	38	20	0.06578947368421052	0.0	A:5:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	5,32,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	186	38	20	0.03225806451612903	0.0	A:90:C:0:G:3:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	3,39,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	27840	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	159	38	20	0.02586206896551724	0.0	A:0:C:0:G:3:T:110:N:0:O:3	A:0:C:0:G:0:T:159:N:0:O:0	1,61,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	159	38	20	0.038834951456310676	0.0	A:0:C:95:G:0:T:4:N:0:O:4	A:0:C:159:G:0:T:0:N:0:O:0	0,73,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28402	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	160	38	20	0.020618556701030927	0.0	A:94:C:0:G:2:T:0:N:0:O:1	A:160:C:0:G:0:T:0:N:0:O:0	2,68,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28404	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	160	38	20	0.030612244897959183	0.00625	A:0:C:0:G:92:T:3:N:0:O:3	A:0:C:0:G:159:T:1:N:0:O:0	3,68,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	175	38	20	0.022988505747126436	0.0	A:0:C:0:G:85:T:2:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	0,39,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	151	175	38	20	0.019867549668874173	0.0	A:0:C:0:G:3:T:115:N:0:O:33	A:0:C:0:G:0:T:175:N:0:O:0	0,81,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	175	38	20	0.04054054054054054	0.0	A:0:C:66:G:0:T:3:N:0:O:5	A:1:C:174:G:0:T:0:N:0:O:0	0,46,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	172	38	20	0.028037383177570093	0.0	A:0:C:102:G:0:T:3:N:0:O:2	A:0:C:172:G:0:T:0:N:0:O:0	0,33,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	172	38	20	0.037037037037037035	0.0	A:0:C:101:G:0:T:4:N:0:O:3	A:0:C:172:G:0:T:0:N:0:O:0	0,37,4,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28881	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	175	38	20	0.02631578947368421	0.0	A:2:C:0:G:73:T:0:N:0:O:1	A:0:C:0:G:174:T:1:N:0:O:0	2,19,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	175	38	20	0.049019607843137254	0.0	A:5:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	5,5,0,97	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	175	38	20	0.03333333333333333	0.0	A:0:C:87:G:0:T:3:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,27,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	339	38	20	0.032520325203252036	0.0	A:0:C:117:G:0:T:4:N:0:O:2	A:0:C:339:G:0:T:0:N:0:O:0	0,113,4,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	29023	T	G	T	16	ignore low frequency variant	Pass	False	False	True	133	341	38	20	0.022556390977443608	0.0	A:0:C:0:G:3:T:130:N:0:O:0	A:1:C:0:G:0:T:340:N:0:O:0	0,110,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	29123	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	190	38	20	0.02857142857142857	0.0	A:3:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	3,47,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	29195	G	C	G	16	ignore low frequency variant	Pass	False	False	True	100	190	38	20	0.02	0.0	A:0:C:2:G:85:T:1:N:0:O:12	A:0:C:0:G:190:T:0:N:0:O:0	2,33,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	94	190	38	20	0.02127659574468085	0.0	A:0:C:90:G:2:T:0:N:0:O:2	A:0:C:190:G:0:T:0:N:0:O:0	1,51,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	194	38	20	0.02702702702702703	0.0	A:103:C:0:G:3:T:0:N:0:O:5	A:194:C:0:G:0:T:0:N:0:O:0	2,22,1,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	138	194	38	20	0.028985507246376812	0.0	A:130:C:4:G:0:T:0:N:0:O:4	A:194:C:0:G:0:T:0:N:0:O:0	0,50,4,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00016	artic-pipeline	NB01	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	5099	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00016	artic-pipeline	NB01	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	76	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	0	38	20	0.038461538461538464	0.0	A:0:C:2:G:0:T:48:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,30,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	45	0	38	20	0.022222222222222223	0.0	A:0:C:44:G:0:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,29,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	114	G	A	G	16	ignore low frequency variant	Pass	False	False	True	56	0	38	20	0.03571428571428571	0.0	A:2:C:0:G:54:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,25,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	224	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	0	38	20	0.02127659574468085	0.0	A:0:C:1:G:0:T:45:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,19,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	227	G	A	G	1	near depth threshold	Alarm	False	False	True	37	0	38	20	0.05405405405405406	0.0	A:2:C:0:G:30:T:0:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	2,13,0,24	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	52	0	38	20	0.9807692307692307	0.0	A:0:C:0:G:0:T:51:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	24,25,27,27	140.0	1334.2	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	306	T	A	T	1	near depth threshold	Alarm	False	False	True	43	0	38	20	0.023255813953488372	0.0	A:1:C:0:G:0:T:39:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	1,13,0,30	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	307	C	T	C	1	near depth threshold	Alarm	False	False	True	42	0	38	20	0.023809523809523808	0.0	A:0:C:37:G:0:T:1:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	1,10,0,32	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	0	38	20	0.027972027972027972	0.0	A:0:C:137:G:0:T:4:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,90,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	0	38	20	0.02912621359223301	0.0	A:0:C:3:G:0:T:100:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,42,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	494	C	G	C	16	ignore low frequency variant	Pass	False	False	True	129	0	38	20	0.023255813953488372	0.0	A:0:C:124:G:3:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,46,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	818	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	0	38	20	0.0297029702970297	0.0	A:0:C:3:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,50,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	822	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	0	38	20	0.022222222222222223	0.0	A:0:C:3:G:0:T:131:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	1,57,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	0	38	20	1.0	0.0	A:0:C:0:G:0:T:140:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	87,87,53,53	210.0	1631.2	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	0	38	20	0.020833333333333332	0.0	A:1:C:84:G:0:T:2:N:0:O:9	A:0:C:0:G:0:T:0:N:0:O:0	0,50,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	0	38	20	0.024096385542168676	0.0	A:2:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,34,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	1810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	0	38	20	0.0390625	0.0	A:123:C:0:G:5:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,45,4,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	0	38	20	0.037037037037037035	0.0	A:2:C:0:G:52:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,34,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	0	38	20	0.020202020202020204	0.0	A:0:C:97:G:0:T:2:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	0	38	20	0.03636363636363636	0.0	A:4:C:0:G:105:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,36,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2408	G	C	G	16	ignore low frequency variant	Pass	False	False	True	110	0	38	20	0.02727272727272727	0.0	A:1:C:3:G:106:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,31,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	0	38	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,64,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	0	38	20	0.022988505747126436	0.0	A:0:C:83:G:0:T:2:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,53,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	116	0	38	20	0.02586206896551724	0.0	A:112:C:3:G:0:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,58,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	0	38	20	0.02830188679245283	0.0	A:103:C:0:G:3:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,39,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	0	38	20	0.03007518796992481	0.0	A:4:C:0:G:125:T:0:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	4,66,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	0	38	20	0.03409090909090909	0.0	A:0:C:80:G:0:T:3:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	0,76,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	62	0	38	20	0.03225806451612903	0.0	A:60:C:2:G:0:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,18,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	0	38	20	0.02608695652173913	0.0	A:0:C:3:G:0:T:112:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,47,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	132	0	38	20	0.7727272727272727	0.0	A:0:C:0:G:1:T:102:N:0:O:29	A:0:C:0:G:0:T:0:N:0:O:0	57,86,45,46	343.216	1547.9	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	0	38	20	0.02608695652173913	0.0	A:0:C:3:G:0:T:110:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,66,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	0	38	20	0.025210084033613446	0.0	A:0:C:3:G:0:T:115:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,64,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.01904761904761905	0.0	A:0:C:0:G:94:T:2:N:0:O:9	A:0:C:0:G:0:T:0:N:0:O:0	0,63,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	0	38	20	0.08139534883720931	0.0	A:0:C:7:G:0:T:79:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,43,7,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	0	38	20	0.022988505747126436	0.0	A:2:C:0:G:0:T:84:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,40,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	0	38	20	0.02247191011235955	0.0	A:0:C:84:G:0:T:2:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	0,34,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	0	38	20	0.02727272727272727	0.0	A:3:C:0:G:107:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,24,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	0	38	20	0.03773584905660377	0.0	A:0:C:102:G:0:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,84,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	0	38	20	0.025	0.0	A:116:C:0:G:3:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,53,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	4202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	0	38	20	0.019736842105263157	0.0	A:0:C:146:G:1:T:3:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,43,3,109	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	4301	C	A	C	16	ignore low frequency variant	Pass	False	False	True	64	0	38	20	0.03125	0.0	A:2:C:54:G:0:T:0:N:0:O:8	A:0:C:0:G:0:T:0:N:0:O:0	0,47,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	4471	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	0	38	20	0.027522935779816515	0.0	A:104:C:0:G:3:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,60,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	4612	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	0	38	20	0.030303030303030304	0.0	A:94:C:0:G:3:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,52,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5084	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	0	38	20	0.03333333333333333	0.0	A:115:C:0:G:0:T:4:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,73,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	151	0	38	20	0.026490066225165563	0.0	A:4:C:0:G:0:T:136:N:0:O:11	A:0:C:0:G:0:T:0:N:0:O:0	2,93,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	0	38	20	0.02631578947368421	0.0	A:73:C:0:G:0:T:2:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,23,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	0	38	20	0.030927835051546393	0.0	A:0:C:0:G:92:T:3:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,45,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	154	0	38	20	0.025974025974025976	0.0	A:0:C:4:G:0:T:150:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,91,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	162	0	38	20	0.024691358024691357	0.0	A:158:C:0:G:4:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,62,0,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	0	38	20	0.025210084033613446	0.0	A:3:C:0:G:113:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	3,41,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	0	38	20	0.03773584905660377	0.0	A:6:C:0:G:153:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,85,5,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	0	38	20	0.032679738562091505	0.0	A:5:C:0:G:147:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,83,5,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	0	38	20	0.022388059701492536	0.0	A:3:C:0:G:115:T:0:N:0:O:16	A:0:C:0:G:0:T:0:N:0:O:0	3,45,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	0	38	20	0.050505050505050504	0.0	A:0:C:92:G:0:T:5:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,72,5,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	0	38	20	0.031746031746031744	0.0	A:0:C:61:G:0:T:2:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,42,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	0	38	20	0.038461538461538464	0.0	A:50:C:0:G:2:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,33,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	0	38	20	0.029850746268656716	0.0	A:2:C:0:G:65:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,33,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6427	T	A	T	16	ignore low frequency variant	Pass	False	False	True	55	0	38	20	0.05454545454545454	0.0	A:3:C:0:G:0:T:48:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	2,27,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	0	38	20	0.023076923076923078	0.0	A:3:C:0:G:125:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,62,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	235	0	38	20	0.02553191489361702	0.0	A:211:C:1:G:6:T:1:N:0:O:16	A:0:C:0:G:0:T:0:N:0:O:0	6,100,0,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	0	38	20	0.02702702702702703	0.0	A:2:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,16,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	0	38	20	0.0297029702970297	0.0	A:0:C:98:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,61,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	7401	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	0	38	20	0.024193548387096774	0.0	A:0:C:121:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,68,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	7468	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	0	38	20	0.0196078431372549	0.0	A:97:C:0:G:2:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	1,50,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	0	38	20	0.04225352112676056	0.0	A:3:C:0:G:66:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,13,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	0	38	20	0.05405405405405406	0.0	A:0:C:6:G:0:T:105:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,51,6,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	109	0	38	20	0.027522935779816515	0.0	A:106:C:3:G:0:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,70,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	8377	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	0	38	20	0.021739130434782608	0.0	A:89:C:2:G:0:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,39,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	0	38	20	0.04310344827586207	0.0	A:0:C:5:G:0:T:111:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,60,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	8628	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	0	38	20	0.02666666666666667	0.0	A:70:C:0:G:1:T:2:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,34,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	0	38	20	0.020618556701030927	0.0	A:2:C:0:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,34,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	0	38	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	1,34,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9106	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	0	38	20	0.022058823529411766	0.0	A:0:C:3:G:0:T:132:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,66,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	0	38	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.047619047619047616	0.0	A:0:C:99:G:0:T:5:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,59,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	0	38	20	0.03076923076923077	0.0	A:0:C:0:G:125:T:4:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,67,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9429	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	0	38	20	0.02564102564102564	0.0	A:3:C:0:G:0:T:114:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,59,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9430	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	0	38	20	0.023809523809523808	0.0	A:0:C:119:G:0:T:3:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,66,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	282	0	38	20	0.024822695035460994	0.0	A:0:C:269:G:0:T:7:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	0,148,7,134	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	161	0	38	20	0.024844720496894408	0.0	A:0:C:157:G:0:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,145,4,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	0	38	20	0.027777777777777776	0.0	A:104:C:0:G:3:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,45,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10170	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	0	38	20	0.035398230088495575	0.0	A:4:C:106:G:0:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	4,71,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	0	38	20	0.02531645569620253	0.0	A:2:C:0:G:76:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,41,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	0	38	20	0.028169014084507043	0.0	A:2:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,31,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	0	38	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:87:N:0:O:8	A:0:C:0:G:0:T:0:N:0:O:0	0,59,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	0	38	20	0.03636363636363636	0.0	A:0:C:106:G:0:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,68,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	0	38	20	0.028846153846153848	0.0	A:100:C:0:G:3:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,43,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	0	38	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:94:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,52,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	0	38	20	0.03296703296703297	0.0	A:0:C:88:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,61,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	0	38	20	0.024390243902439025	0.0	A:0:C:0:G:3:T:115:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	0,60,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	10995	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	0	38	20	0.025423728813559324	0.0	A:110:C:0:G:3:T:1:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	3,46,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	0	38	20	0.020833333333333332	0.0	A:0:C:0:G:2:T:92:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	1,57,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	70	0	38	20	0.04285714285714286	0.0	A:0:C:1:G:65:T:3:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,29,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	11332	A	G	A	16	ignore low frequency variant	Pass	False	False	True	188	0	38	20	0.0425531914893617	0.0	A:178:C:0:G:8:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	8,121,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	11654	T	C	T	16	ignore low frequency variant	Pass	False	False	True	211	0	38	20	0.06635071090047394	0.0	A:0:C:14:G:0:T:196:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	10,164,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	11754	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	0	38	20	0.020618556701030927	0.0	A:2:C:92:G:0:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	2,54,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	0	38	20	0.030303030303030304	0.0	A:64:C:0:G:2:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,37,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	0	38	20	0.02197802197802198	0.0	A:0:C:70:G:0:T:2:N:0:O:19	A:0:C:0:G:0:T:0:N:0:O:0	0,68,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	173	0	38	20	0.028901734104046242	0.0	A:5:C:0:G:159:T:0:N:0:O:9	A:0:C:0:G:0:T:0:N:0:O:0	4,49,1,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	0	38	20	0.022222222222222223	0.0	A:3:C:0:G:101:T:0:N:0:O:31	A:0:C:0:G:0:T:0:N:0:O:0	0,108,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	0	38	20	0.03773584905660377	0.0	A:4:C:0:G:98:T:0:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	4,44,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	217	0	38	20	0.03225806451612903	0.0	A:7:C:0:G:210:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	7,90,0,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	0	38	20	0.02197802197802198	0.0	A:84:C:0:G:2:T:0:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	2,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	0	38	20	0.02564102564102564	0.0	A:0:C:76:G:0:T:2:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,61,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12772	A	G	A	16	ignore low frequency variant	Pass	False	False	True	225	0	38	20	0.022222222222222223	0.0	A:217:C:0:G:5:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	5,61,0,164	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	0	38	20	0.021739130434782608	0.0	A:0:C:3:G:0:T:133:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,59,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	0	38	20	0.022556390977443608	0.0	A:127:C:0:G:3:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	3,37,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	162	0	38	20	0.024691358024691357	0.0	A:4:C:0:G:0:T:155:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	4,55,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	0	38	20	0.021897810218978103	0.0	A:3:C:0:G:134:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,29,0,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	12975	T	C	T	16	ignore low frequency variant	Pass	False	False	True	148	0	38	20	0.02027027027027027	0.0	A:0:C:3:G:0:T:143:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,64,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	0	38	20	0.03225806451612903	0.0	A:0:C:119:G:0:T:4:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,62,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13100	G	A	N	2	allele in negative control	Alarm	False	False	False	72	0	38	20	0.027777777777777776	0.0	A:2:C:0:G:69:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,22,0,50	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13117	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	0	38	20	0.03418803418803419	0.0	A:113:C:0:G:4:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,62,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	0	38	20	0.023076923076923078	0.0	A:3:C:0:G:118:T:0:N:0:O:9	A:0:C:0:G:0:T:0:N:0:O:0	3,70,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	0	38	20	0.027522935779816515	0.0	A:89:C:0:G:3:T:0:N:0:O:17	A:0:C:0:G:0:T:0:N:0:O:0	3,56,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13475	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	0	38	20	0.031746031746031744	0.0	A:2:C:1:G:59:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	1,41,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	0	38	20	0.06896551724137931	0.0	A:1:C:53:G:0:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,52,4,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	0	38	20	0.02	0.0	A:2:C:0:G:92:T:0:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	2,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	0	38	20	0.019801980198019802	0.0	A:0:C:0:G:2:T:97:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,47,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	0	38	20	0.024	0.0	A:3:C:113:G:0:T:0:N:0:O:9	A:0:C:0:G:0:T:0:N:0:O:0	3,62,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.02857142857142857	0.0	A:1:C:3:G:0:T:96:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	3,34,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	13973	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	0	38	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:94:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	3,32,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	0	38	20	0.027522935779816515	0.0	A:3:C:0:G:106:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,36,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	0	38	20	0.022900763358778626	0.0	A:0:C:111:G:0:T:3:N:0:O:17	A:0:C:0:G:0:T:0:N:0:O:0	0,54,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14289	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	0	38	20	0.02608695652173913	0.0	A:0:C:0:G:3:T:111:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,53,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14394	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	0	38	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:90:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	1,47,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	92	0	38	20	1.0	0.0	A:0:C:0:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	31,31,61,61	322.815	1396.1	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	0	38	20	0.028037383177570093	0.0	A:103:C:0:G:3:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,20,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	0	38	20	0.039603960396039604	0.0	A:4:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	4,69,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	0	38	20	0.02197802197802198	0.0	A:2:C:0:G:88:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,60,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	0	38	20	0.038461538461538464	0.0	A:98:C:0:G:4:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	4,84,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14731	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	0	38	20	0.022058823529411766	0.0	A:3:C:0:G:127:T:0:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	3,108,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14844	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	0	38	20	0.03361344537815126	0.0	A:114:C:0:G:4:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	4,86,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14960	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	0	38	20	0.021897810218978103	0.0	A:134:C:0:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,72,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	14961	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	0	38	20	0.020689655172413793	0.0	A:0:C:3:G:0:T:136:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	0,76,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	15049	C	T	T	14	new position at high frequency	Pass	False	True	True	125	0	38	20	1.0	0.0	A:0:C:0:G:0:T:125:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	60,60,65,65	205.463	1519.0	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	0	38	20	0.02912621359223301	0.0	A:3:C:0:G:98:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,35,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	0	38	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:85:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,77,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	15146	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	0	38	20	0.02608695652173913	0.0	A:3:C:0:G:112:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,42,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	0	38	20	0.022727272727272728	0.0	A:0:C:156:G:0:T:4:N:0:O:16	A:0:C:0:G:0:T:0:N:0:O:0	0,146,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	15869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	0	38	20	0.024193548387096774	0.0	A:121:C:0:G:3:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,55,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	15955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	0	38	20	0.03125	0.0	A:2:C:0:G:62:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,54,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16001	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	0	38	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,17,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	0	38	20	0.03773584905660377	0.0	A:0:C:98:G:0:T:4:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,61,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	0	38	20	0.025	0.0	A:0:C:76:G:0:T:2:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,48,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	0	38	20	0.04807692307692308	0.0	A:99:C:0:G:0:T:5:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	5,34,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	117	0	38	20	0.042735042735042736	0.0	A:0:C:111:G:5:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	5,31,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16506	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.01904761904761905	0.0	A:2:C:0:G:0:T:97:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	2,31,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	0	38	20	0.06956521739130435	0.0	A:0:C:0:G:105:T:8:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	6,50,2,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	0	38	20	0.02586206896551724	0.0	A:0:C:113:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,63,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.02857142857142857	0.0	A:3:C:0:G:100:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,24,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16757	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	0	38	20	0.021897810218978103	0.0	A:0:C:134:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,62,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	0	38	20	0.028846153846153848	0.0	A:3:C:0:G:96:T:0:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	3,12,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	0	38	20	0.023255813953488372	0.0	A:0:C:2:G:0:T:84:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,42,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	0	38	20	0.047619047619047616	0.0	A:0:C:0:G:4:T:79:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,42,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16943	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	0	38	20	0.04	0.0	A:0:C:0:G:48:T:2:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,30,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	16949	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	0	38	20	0.03488372093023256	0.0	A:0:C:81:G:0:T:3:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,34,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	197	0	38	20	0.030456852791878174	0.0	A:191:C:0:G:6:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	6,61,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.02857142857142857	0.0	A:102:C:0:G:3:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,39,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17394	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	0	38	20	0.023255813953488372	0.0	A:3:C:0:G:0:T:126:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,70,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17491	C	A	C	16	ignore low frequency variant	Pass	False	False	True	181	0	38	20	0.022099447513812154	0.0	A:4:C:177:G:0:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,83,1,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	152	0	38	20	0.07236842105263158	0.0	A:11:C:0:G:141:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	11,64,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	0	38	20	0.03076923076923077	0.0	A:0:C:126:G:0:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,83,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	235	0	38	20	0.03404255319148936	0.0	A:0:C:216:G:0:T:8:N:0:O:11	A:0:C:0:G:0:T:0:N:0:O:0	0,138,8,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17845	C	T	C	1	near depth threshold	Alarm	False	False	True	45	0	38	20	0.044444444444444446	0.0	A:0:C:43:G:0:T:2:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,25,2,20	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	0	38	20	0.03225806451612903	0.0	A:54:C:0:G:0:T:2:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	0,26,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	0	38	20	0.02631578947368421	0.0	A:2:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,41,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17873	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	0	38	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,48,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	0	38	20	0.07575757575757576	0.0	A:5:C:0:G:61:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	5,23,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	0	38	20	0.04918032786885246	0.0	A:54:C:0:G:3:T:0:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	3,23,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	0	38	20	0.038461538461538464	0.0	A:2:C:0:G:49:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,18,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	0	38	20	0.021739130434782608	0.0	A:4:C:0:G:177:T:1:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,13,1,171	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	0	38	20	0.028037383177570093	0.0	A:0:C:104:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,56,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	0	38	20	0.024390243902439025	0.0	A:0:C:0:G:2:T:79:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	1,31,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	18558	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	0	38	20	0.023622047244094488	0.0	A:122:C:0:G:3:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,54,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	18570	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	0	38	20	0.03571428571428571	0.0	A:0:C:54:G:0:T:2:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,53,2,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	0	38	20	0.022988505747126436	0.0	A:85:C:0:G:2:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,27,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	0	38	20	0.05555555555555555	0.0	A:4:C:0:G:66:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	4,17,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	0	38	20	0.02631578947368421	0.0	A:0:C:0:G:3:T:111:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,50,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	0	38	20	0.031496062992125984	0.0	A:4:C:0:G:118:T:0:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	4,25,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	19406	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	0	38	20	0.06474820143884892	0.0	A:9:C:0:G:121:T:0:N:0:O:9	A:0:C:0:G:0:T:0:N:0:O:0	3,60,6,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	0	38	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,54,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	0	38	20	0.09230769230769231	0.0	A:0:C:59:G:0:T:6:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,46,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	19862	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	0	38	20	0.028037383177570093	0.0	A:0:C:101:G:0:T:3:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	0,51,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	20012	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	0	38	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:99:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,38,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	20278	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	0	38	20	0.0196078431372549	0.0	A:0:C:0:G:98:T:2:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	1,61,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	0	38	20	0.02127659574468085	0.0	A:90:C:0:G:2:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	2,47,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	20635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	0	38	20	0.0196078431372549	0.0	A:3:C:0:G:145:T:0:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	3,71,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	20676	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	0	38	20	0.037037037037037035	0.0	A:128:C:0:G:5:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	5,63,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	20758	G	A	G	12	misc mixed variant	Check	False	False	True	162	0	38	20	0.2839506172839506	0.0	A:46:C:0:G:114:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	29,100,17,62	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	0	38	20	0.035398230088495575	0.0	A:4:C:0:G:107:T:1:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	4,49,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	0	38	20	0.0423728813559322	0.0	A:2:C:107:G:0:T:5:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	5,58,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	20988	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	0	38	20	0.21359223300970873	0.0	A:0:C:22:G:0:T:80:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	5,40,17,63	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	0	38	20	0.1322314049586777	0.0	A:0:C:0:G:92:T:16:N:0:O:13	A:0:C:0:G:0:T:0:N:0:O:0	0,81,16,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	0	38	20	0.02727272727272727	0.0	A:0:C:107:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,59,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	0	38	20	0.032520325203252036	0.0	A:4:C:0:G:119:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,56,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	0	38	20	0.04819277108433735	0.0	A:79:C:0:G:4:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	0	38	20	0.038461538461538464	0.0	A:4:C:0:G:97:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	4,40,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	0	38	20	0.061068702290076333	0.0	A:0:C:117:G:0:T:8:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	5,34,3,97	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	179	0	38	20	0.027932960893854747	0.0	A:114:C:0:G:0:T:5:N:0:O:60	A:0:C:0:G:0:T:0:N:0:O:0	0,126,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	0	38	20	0.02027027027027027	0.0	A:0:C:145:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,60,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	22029	A	G	A	1	near depth threshold	Alarm	False	False	True	34	0	38	20	0.029411764705882353	0.0	A:33:C:0:G:1:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,20,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22030	G	T	G	1	near depth threshold	Alarm	False	False	True	34	0	38	20	0.029411764705882353	0.0	A:0:C:0:G:31:T:1:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	1,19,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22079	C	T	C	1	near depth threshold	Alarm	False	False	True	31	0	38	20	0.03225806451612903	0.0	A:0:C:30:G:0:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,19,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22080	A	G	A	1	near depth threshold	Alarm	False	False	True	35	0	38	20	0.02857142857142857	0.0	A:34:C:0:G:1:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,21,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22099	T	G	T	1	near depth threshold	Alarm	False	False	True	36	0	38	20	0.027777777777777776	0.0	A:0:C:0:G:1:T:31:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,20,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22121	A	C	A	1	near depth threshold	Alarm	False	False	True	30	0	38	20	0.03333333333333333	0.0	A:29:C:1:G:0:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,19,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22125	A	T	A	1	near depth threshold	Alarm	False	False	True	32	0	38	20	0.03125	0.0	A:31:C:0:G:0:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,21,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22126	T	G	T	1	near depth threshold	Alarm	False	False	True	40	0	38	20	0.025	0.0	A:1:C:0:G:1:T:38:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,23,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22127	C	A	C	1	near depth threshold	Alarm	False	False	True	40	0	38	20	0.025	0.0	A:1:C:38:G:0:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,22,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22131	G	A	G	1	near depth threshold	Alarm	False	False	True	23	0	38	20	0.043478260869565216	0.0	A:1:C:0:G:22:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,12,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22132	G	A	G	1	near depth threshold	Alarm	False	False	True	27	0	38	20	0.037037037037037035	0.0	A:1:C:0:G:26:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,13,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	22133	G	A	G	1	near depth threshold	Alarm	False	False	True	26	0	38	20	0.038461538461538464	0.0	A:1:C:0:G:25:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,13,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22135	A	T	A	1	near depth threshold	Alarm	False	False	True	35	0	38	20	0.02857142857142857	0.0	A:34:C:0:G:0:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,18,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22165	T	C	T	1	near depth threshold	Alarm	False	False	True	43	0	38	20	0.023255813953488372	0.0	A:0:C:1:G:0:T:34:N:0:O:8	A:0:C:0:G:0:T:0:N:0:O:0	0,20,1,23	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22183	C	T	C	1	near depth threshold	Alarm	False	False	True	23	0	38	20	0.043478260869565216	0.0	A:0:C:22:G:0:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22209	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	0	38	20	0.02	0.0	A:0:C:1:G:0:T:38:N:0:O:11	A:0:C:0:G:0:T:0:N:0:O:0	1,27,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22210	C	T	C	1	near depth threshold	Alarm	False	False	True	24	0	38	20	0.041666666666666664	0.0	A:0:C:23:G:0:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,21,0,3	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22251	C	T	C	1	near depth threshold	Alarm	False	False	True	29	0	38	20	0.034482758620689655	0.0	A:0:C:28:G:0:T:1:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,22,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22300	A	G	A	1	near depth threshold	Alarm	False	False	True	42	0	38	20	0.023809523809523808	0.0	A:41:C:0:G:1:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,20,0,22	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22305	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	0	38	20	0.021739130434782608	0.0	A:44:C:0:G:0:T:1:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,23,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22552	T	C	T	16	ignore low frequency variant	Pass	False	False	True	185	0	38	20	0.021621621621621623	0.0	A:0:C:4:G:0:T:175:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	1,95,3,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	22864	A	G	A	16	ignore low frequency variant	Pass	False	False	True	299	0	38	20	0.020066889632107024	0.0	A:289:C:0:G:6:T:0:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	6,105,0,194	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	0	38	20	0.024096385542168676	0.0	A:81:C:0:G:2:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,55,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	0	38	20	0.02247191011235955	0.0	A:0:C:0:G:2:T:84:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	0,43,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	0	38	20	0.023809523809523808	0.0	A:0:C:123:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,73,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	141	0	38	20	0.9361702127659575	0.0	A:0:C:0:G:132:T:0:N:0:O:9	A:0:C:0:G:0:T:0:N:0:O:0	75,84,57,57	139.237	1812.8	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	23424	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	0	38	20	0.023809523809523808	0.0	A:0:C:123:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,68,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23426	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	0	38	20	0.03333333333333333	0.0	A:0:C:0:G:116:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,67,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	0	38	20	0.044642857142857144	0.0	A:5:C:0:G:94:T:0:N:0:O:13	A:0:C:0:G:0:T:0:N:0:O:0	5,29,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	0	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:92:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	0,52,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23598	A	C	A	16	ignore low frequency variant	Pass	False	False	True	111	0	38	20	0.02702702702702703	0.0	A:106:C:3:G:0:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,60,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23835	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	0	38	20	0.02040816326530612	0.0	A:3:C:0:G:110:T:0:N:0:O:34	A:0:C:0:G:0:T:0:N:0:O:0	3,72,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	0	38	20	0.16666666666666666	0.0	A:0:C:94:G:0:T:19:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,81,19,33	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	0	38	20	0.02654867256637168	0.0	A:1:C:3:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,78,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	0	38	20	0.0273972602739726	0.0	A:142:C:0:G:0:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,75,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	0	38	20	0.07246376811594203	0.0	A:5:C:0:G:0:T:64:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	5,16,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	0	38	20	0.03225806451612903	0.0	A:4:C:0:G:119:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	4,50,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	0	38	20	0.047619047619047616	0.0	A:0:C:80:G:0:T:4:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,70,4,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24229	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	0	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,57,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	0	38	20	0.03278688524590164	0.0	A:0:C:59:G:0:T:2:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,45,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	0	38	20	0.019230769230769232	0.0	A:47:C:0:G:1:T:0:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,45,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	0	38	20	0.04040404040404041	0.0	A:4:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,23,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	88	0	38	20	0.022727272727272728	0.0	A:86:C:2:G:0:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,50,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	0	38	20	0.028169014084507043	0.0	A:0:C:65:G:0:T:2:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,67,2,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	0	38	20	0.026785714285714284	0.0	A:0:C:0:G:3:T:108:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,77,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25061	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	0	38	20	0.02702702702702703	0.0	A:2:C:0:G:68:T:0:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	2,41,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	0	38	20	0.026785714285714284	0.0	A:108:C:0:G:3:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,73,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.02857142857142857	0.0	A:0:C:0:G:3:T:101:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,31,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25518	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	0	38	20	0.02702702702702703	0.0	A:0:C:3:G:0:T:105:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	0,53,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	0	38	20	0.024096385542168676	0.0	A:0:C:73:G:0:T:2:N:0:O:8	A:0:C:0:G:0:T:0:N:0:O:0	0,66,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	102	0	38	20	1.0	0.0	A:0:C:0:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	37,37,65,65	350.0	1912.2	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	0	38	20	0.015267175572519083	0.0	A:2:C:91:G:0:T:0:N:0:O:38	A:0:C:0:G:0:T:0:N:0:O:0	2,53,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	0	38	20	0.031914893617021274	0.0	A:0:C:91:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,60,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	0	38	20	0.03	0.0	A:96:C:0:G:3:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	0	38	20	0.06521739130434782	0.0	A:84:C:0:G:6:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	6,30,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	0	38	20	0.030303030303030304	0.0	A:3:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,34,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	177	0	38	20	0.02824858757062147	0.0	A:172:C:0:G:5:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,139,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	0	38	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,25,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26309	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	0	38	20	0.021739130434782608	0.0	A:0:C:87:G:0:T:2:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	1,53,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.02857142857142857	0.0	A:3:C:0:G:100:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	3,44,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	269	0	38	20	0.03345724907063197	0.0	A:0:C:259:G:0:T:9:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,232,9,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	294	0	38	20	0.04421768707482993	0.0	A:0:C:13:G:0:T:281:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,235,13,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	0	38	20	0.031496062992125984	0.0	A:0:C:122:G:0:T:4:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	4,89,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	0	38	20	0.12162162162162163	0.0	A:9:C:0:G:65:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	9,17,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	0	38	20	0.040983606557377046	0.0	A:5:C:0:G:117:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	5,76,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	0	38	20	0.031007751937984496	0.0	A:124:C:0:G:4:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	4,90,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	0	38	20	0.03260869565217391	0.0	A:0:C:3:G:0:T:85:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,60,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	0	38	20	0.02857142857142857	0.0	A:0:C:101:G:0:T:3:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,54,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	26992	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	0	38	20	0.10843373493975904	0.0	A:9:C:0:G:73:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	5,65,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	0	38	20	0.056818181818181816	0.0	A:5:C:0:G:82:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	5,22,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	0	38	20	0.036585365853658534	0.0	A:0:C:79:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,58,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	27418	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	0	38	20	0.02097902097902098	0.0	A:0:C:140:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,57,1,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	0	38	20	0.02727272727272727	0.0	A:3:C:0:G:107:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,27,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	0	38	20	0.021739130434782608	0.0	A:89:C:1:G:2:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,50,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	27746	G	T	T	14	new position at high frequency	Pass	False	True	True	112	0	38	20	0.9732142857142857	0.0	A:1:C:1:G:1:T:109:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	68,69,41,43	198.931	1564.6	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	0	38	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:90:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	0,63,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	0	38	20	0.036585365853658534	0.0	A:0:C:79:G:0:T:3:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,55,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	0	38	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,42,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	0	38	20	0.029411764705882353	0.0	A:3:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,77,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	0	38	20	0.025974025974025976	0.0	A:0:C:72:G:0:T:2:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	0,49,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	0	38	20	0.03333333333333333	0.0	A:86:C:0:G:3:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	3,32,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	0	38	20	0.06315789473684211	0.0	A:0:C:83:G:0:T:6:N:0:O:6	A:0:C:0:G:0:T:0:N:0:O:0	0,26,6,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	0	38	20	0.07575757575757576	0.0	A:0:C:60:G:0:T:5:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,25,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28863	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	0	38	20	0.0196078431372549	0.0	A:2:C:67:G:0:T:0:N:0:O:33	A:0:C:0:G:0:T:0:N:0:O:0	0,62,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	0	38	20	0.02830188679245283	0.0	A:3:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,5,0,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	0	38	20	0.05714285714285714	0.0	A:0:C:4:G:0:T:66:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	0,18,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	0	38	20	0.056451612903225805	0.0	A:0:C:113:G:0:T:7:N:0:O:4	A:0:C:0:G:0:T:0:N:0:O:0	0,111,7,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	0	38	20	0.03125	0.0	A:2:C:0:G:62:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	2,3,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	0	38	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:106:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,74,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	0	38	20	0.02564102564102564	0.0	A:3:C:0:G:114:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	3,55,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	103	0	38	20	0.038834951456310676	0.0	A:0:C:4:G:98:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	2,51,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	155	0	38	20	0.01935483870967742	0.0	A:147:C:0:G:3:T:0:N:0:O:5	A:0:C:0:G:0:T:0:N:0:O:0	0,95,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	0	38	20	0.03669724770642202	0.0	A:105:C:0:G:4:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	4,50,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	201	0	38	20	0.01990049751243781	0.0	A:4:C:0:G:194:T:0:N:0:O:3	A:0:C:0:G:0:T:0:N:0:O:0	4,104,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	148	0	38	20	0.02027027027027027	0.0	A:130:C:0:G:3:T:0:N:0:O:15	A:0:C:0:G:0:T:0:N:0:O:0	3,58,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	0	38	20	0.03731343283582089	0.0	A:5:C:0:G:104:T:0:N:0:O:25	A:0:C:0:G:0:T:0:N:0:O:0	5,38,0,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	200	0	38	20	0.02	0.0	A:194:C:4:G:0:T:0:N:0:O:2	A:0:C:0:G:0:T:0:N:0:O:0	0,116,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	163	0	38	20	0.03680981595092025	0.0	A:157:C:0:G:6:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	6,70,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29742	G	A	G	1	near depth threshold	Alarm	False	False	True	38	0	38	20	0.02631578947368421	0.0	A:1:C:0:G:37:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,19,0,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	29782	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	0	38	20	0.021739130434782608	0.0	A:44:C:0:G:1:T:0:N:0:O:1	A:0:C:0:G:0:T:0:N:0:O:0	0,19,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	0	38	20	0.02	0.0	A:49:C:0:G:1:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,28,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	29801	C	G	C	1	near depth threshold	Alarm	False	False	True	34	0	38	20	0.029411764705882353	0.0	A:0:C:33:G:1:T:0:N:0:O:0	A:0:C:0:G:0:T:0:N:0:O:0	1,10,0,24	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00018	artic-pipeline	NB02	MN908947.3	8782	C	N	N	19	ambiguous base at key position	Pass	.	False	False	30	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	17304	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00018	artic-pipeline	NB02	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	193	38	20	0.03278688524590164	0.0	A:0:C:58:G:0:T:2:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,37,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	65	193	38	20	0.015384615384615385	0.0051813471502590676	A:1:C:44:G:0:T:0:N:0:O:20	A:1:C:192:G:0:T:0:N:0:O:0	1,54,0,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	66	193	38	20	0.9393939393939394	1.0	A:0:C:0:G:0:T:62:N:0:O:4	A:0:C:0:G:0:T:193:N:0:O:0	20,24,42,42	70.0	1567.5	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	247	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	193	38	20	0.019230769230769232	0.0	A:1:C:0:G:49:T:0:N:0:O:2	A:0:C:0:G:193:T:0:N:0:O:0	1,20,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	193	38	20	0.02040816326530612	0.0	A:1:C:0:G:0:T:44:N:0:O:4	A:0:C:0:G:0:T:193:N:0:O:0	1,12,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	307	C	T	C	1	near depth threshold	Alarm	False	False	True	45	193	38	20	0.022222222222222223	0.0	A:0:C:41:G:0:T:1:N:0:O:3	A:0:C:193:G:0:T:0:N:0:O:0	1,7,0,38	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	332	G	T	G	16	ignore low frequency variant	Pass	False	False	True	80	193	38	20	0.025	0.0	A:0:C:0:G:77:T:2:N:0:O:1	A:0:C:0:G:193:T:0:N:0:O:0	2,50,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	610	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	312	38	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:312:C:0:G:0:T:0:N:0:O:0	3,49,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	835	C	G	C	16	ignore low frequency variant	Pass	False	False	True	91	262	38	20	0.04395604395604396	0.0	A:0:C:82:G:4:T:0:N:0:O:5	A:0:C:262:G:0:T:0:N:0:O:0	0,52,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	859	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	262	38	20	0.021505376344086023	0.0	A:0:C:0:G:2:T:88:N:0:O:3	A:0:C:0:G:0:T:262:N:0:O:0	0,54,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	192	38	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:90:N:0:O:0	A:0:C:0:G:0:T:192:N:0:O:0	0,49,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	1018	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	194	38	20	0.04081632653061224	0.0	A:4:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	4,45,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	194	38	20	0.024096385542168676	0.0	A:0:C:74:G:0:T:2:N:0:O:7	A:0:C:194:G:0:T:0:N:0:O:0	0,41,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	194	38	20	0.0547945205479452	0.0	A:4:C:0:G:68:T:0:N:0:O:1	A:0:C:0:G:194:T:0:N:0:O:0	4,21,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	298	38	20	0.06164383561643835	0.0	A:0:C:135:G:0:T:9:N:0:O:2	A:1:C:297:G:0:T:0:N:0:O:0	0,37,9,109	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	319	386	38	20	0.018808777429467086	0.0	A:0:C:289:G:0:T:6:N:0:O:24	A:0:C:386:G:0:T:0:N:0:O:0	0,84,6,235	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	1629	A	C	N	2	allele in negative control	Alarm	False	False	False	75	195	38	20	0.02666666666666667	0.0	A:72:C:2:G:0:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	1,40,1,35	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	1701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	195	38	20	0.02112676056338028	0.0	A:0:C:105:G:0:T:3:N:0:O:34	A:1:C:194:G:0:T:0:N:0:O:0	0,59,3,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	195	38	20	0.030303030303030304	0.0	A:1:C:3:G:0:T:92:N:0:O:3	A:0:C:0:G:0:T:195:N:0:O:0	0,44,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	193	38	20	0.022988505747126436	0.0	A:2:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	2,52,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	193	38	20	0.088	0.0	A:11:C:0:G:112:T:0:N:0:O:2	A:0:C:0:G:192:T:1:N:0:O:0	11,33,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	2501	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	199	38	20	0.028846153846153848	0.0	A:101:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,34,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	199	38	20	0.021739130434782608	0.0	A:2:C:0:G:87:T:1:N:0:O:2	A:0:C:0:G:199:T:0:N:0:O:0	2,18,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	2588	G	T	G	16	ignore low frequency variant	Pass	False	False	True	191	189	38	20	0.020942408376963352	0.0	A:0:C:0:G:179:T:4:N:0:O:8	A:0:C:0:G:189:T:0:N:0:O:0	4,138,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	154	189	38	20	0.025974025974025976	0.0	A:150:C:4:G:0:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	4,108,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	189	38	20	0.06666666666666667	0.0	A:112:C:0:G:8:T:0:N:0:O:0	A:188:C:0:G:0:T:1:N:0:O:0	8,68,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	62	195	38	20	0.03225806451612903	0.0	A:59:C:2:G:1:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	0,18,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	119	197	38	20	0.773109243697479	1.0	A:0:C:0:G:0:T:92:N:0:O:27	A:0:C:0:G:0:T:197:N:0:O:0	41,68,51,51	208.474	1360.9	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	197	38	20	0.04672897196261682	0.0	A:0:C:5:G:0:T:100:N:0:O:2	A:0:C:0:G:0:T:197:N:0:O:0	0,54,5,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	197	38	20	0.0380952380952381	0.0	A:0:C:0:G:87:T:4:N:0:O:14	A:0:C:0:G:197:T:0:N:0:O:0	0,58,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	196	38	20	0.04395604395604396	0.0	A:0:C:4:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,49,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	196	38	20	0.05102040816326531	0.0	A:0:C:90:G:0:T:5:N:0:O:3	A:0:C:196:G:0:T:0:N:0:O:0	0,48,5,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	196	38	20	0.020618556701030927	0.0	A:2:C:0:G:90:T:0:N:0:O:5	A:0:C:0:G:196:T:0:N:0:O:0	2,26,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	196	38	20	0.04225352112676056	0.0	A:68:C:0:G:3:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	1,27,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	196	38	20	0.031496062992125984	0.0	A:122:C:0:G:4:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	4,36,0,91	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	198	38	20	0.13592233009708737	0.0	A:0:C:88:G:0:T:14:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,73,14,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	3774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	198	38	20	0.024096385542168676	0.0	A:2:C:0:G:80:T:1:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	2,37,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	193	38	20	0.025974025974025976	0.0	A:0:C:68:G:0:T:2:N:0:O:7	A:0:C:193:G:0:T:0:N:0:O:0	0,58,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	193	38	20	0.020833333333333332	0.0	A:3:C:0:G:0:T:115:N:0:O:26	A:0:C:0:G:0:T:193:N:0:O:0	0,72,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	226	396	38	20	0.022123893805309734	0.0	A:0:C:0:G:202:T:5:N:0:O:19	A:0:C:0:G:396:T:0:N:0:O:0	0,151,5,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4371	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	396	38	20	0.02197802197802198	0.0	A:4:C:0:G:176:T:0:N:0:O:2	A:0:C:0:G:395:T:1:N:0:O:0	0,138,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	214	396	38	20	0.018691588785046728	0.0	A:0:C:0:G:184:T:4:N:0:O:26	A:0:C:0:G:396:T:0:N:0:O:0	0,157,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	179	396	38	20	0.027932960893854747	0.0	A:5:C:0:G:174:T:0:N:0:O:0	A:0:C:0:G:396:T:0:N:0:O:0	0,92,5,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	396	38	20	0.03875968992248062	0.0	A:0:C:119:G:0:T:5:N:0:O:5	A:0:C:396:G:0:T:0:N:0:O:0	0,71,5,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	203	38	20	0.02586206896551724	0.0	A:105:C:0:G:0:T:3:N:0:O:8	A:203:C:0:G:0:T:0:N:0:O:0	0,72,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4656	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	199	38	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:198:T:1:N:0:O:0	2,31,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	4668	C	T	C	16	ignore low frequency variant	Pass	False	False	True	255	393	38	20	0.0196078431372549	0.0	A:1:C:241:G:0:T:5:N:0:O:8	A:0:C:393:G:0:T:0:N:0:O:0	0,156,5,99	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	203	38	20	0.022222222222222223	0.0	A:0:C:163:G:0:T:4:N:0:O:13	A:0:C:202:G:0:T:0:N:0:O:1	0,104,4,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	195	38	20	0.03597122302158273	0.0	A:129:C:0:G:5:T:0:N:0:O:5	A:195:C:0:G:0:T:0:N:0:O:0	5,83,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	196	38	20	0.019801980198019802	0.0	A:2:C:0:G:97:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	2,58,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	196	38	20	0.025	0.0	A:3:C:0:G:115:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	3,67,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	196	38	20	0.02654867256637168	0.0	A:3:C:0:G:110:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	1,73,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	198	38	20	0.020833333333333332	0.0	A:0:C:94:G:0:T:2:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,58,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	198	38	20	0.1095890410958904	0.0	A:0:C:65:G:0:T:8:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,57,8,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	198	38	20	0.019417475728155338	0.0	A:0:C:2:G:0:T:97:N:0:O:4	A:0:C:0:G:0:T:198:N:0:O:0	0,47,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	5866	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	198	38	20	0.031007751937984496	0.0	A:0:C:120:G:0:T:4:N:0:O:5	A:0:C:198:G:0:T:0:N:0:O:0	0,66,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	198	38	20	0.09615384615384616	0.0	A:0:C:94:G:0:T:10:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,73,10,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	272	378	38	20	0.025735294117647058	0.0	A:7:C:0:G:254:T:0:N:0:O:11	A:0:C:0:G:378:T:0:N:0:O:0	7,133,0,139	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	181	38	20	0.034482758620689655	0.0	A:0:C:84:G:0:T:3:N:0:O:0	A:0:C:181:G:0:T:0:N:0:O:0	0,62,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	181	38	20	0.029411764705882353	0.0	A:3:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:180:T:1:N:0:O:0	0,48,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6589	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	169	38	20	0.023529411764705882	0.0	A:2:C:0:G:75:T:0:N:0:O:8	A:0:C:0:G:169:T:0:N:0:O:0	2,34,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6626	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	170	38	20	0.025	0.0	A:74:C:0:G:2:T:0:N:0:O:4	A:170:C:0:G:0:T:0:N:0:O:0	2,43,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6630	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	171	38	20	0.028985507246376812	0.0	A:0:C:2:G:0:T:67:N:0:O:0	A:0:C:0:G:0:T:171:N:0:O:0	1,33,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	171	38	20	0.024691358024691357	0.0	A:78:C:0:G:2:T:0:N:0:O:1	A:171:C:0:G:0:T:0:N:0:O:0	2,39,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	171	38	20	0.0379746835443038	0.0	A:0:C:75:G:0:T:3:N:0:O:1	A:0:C:171:G:0:T:0:N:0:O:0	0,50,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	260	38	20	0.030303030303030304	0.0	A:120:C:0:G:4:T:1:N:0:O:7	A:260:C:0:G:0:T:0:N:0:O:0	4,62,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	259	38	20	0.032520325203252036	0.0	A:0:C:115:G:0:T:4:N:0:O:4	A:0:C:259:G:0:T:0:N:0:O:0	0,86,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6859	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	200	38	20	0.02531645569620253	0.0	A:77:C:0:G:2:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	2,28,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	200	38	20	0.03125	0.0	A:2:C:0:G:62:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	2,13,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	200	38	20	0.020833333333333332	0.01	A:0:C:0:G:92:T:2:N:0:O:2	A:0:C:0:G:198:T:2:N:0:O:0	0,46,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	7103	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	185	38	20	0.023809523809523808	0.0	A:121:C:0:G:3:T:0:N:0:O:2	A:185:C:0:G:0:T:0:N:0:O:0	3,85,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	7155	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	185	38	20	0.022388059701492536	0.0	A:0:C:123:G:0:T:3:N:0:O:8	A:0:C:185:G:0:T:0:N:0:O:0	0,95,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	185	38	20	0.024691358024691357	0.0	A:70:C:0:G:2:T:0:N:0:O:9	A:185:C:0:G:0:T:0:N:0:O:0	2,39,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	61	184	38	20	0.03278688524590164	0.0	A:0:C:0:G:2:T:59:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	2,29,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	198	38	20	0.025	0.0	A:0:C:76:G:0:T:2:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,64,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	198	38	20	0.02702702702702703	0.0	A:2:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	2,32,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	198	38	20	0.020833333333333332	0.0	A:2:C:0:G:92:T:0:N:0:O:2	A:0:C:0:G:198:T:0:N:0:O:0	2,52,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	200	38	20	0.025	0.0	A:0:C:75:G:0:T:2:N:0:O:3	A:0:C:200:G:0:T:0:N:0:O:0	0,57,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	200	38	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	0,59,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	197	38	20	0.023809523809523808	0.0	A:82:C:2:G:0:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	0,51,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	8142	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	197	38	20	0.02702702702702703	0.0	A:3:C:0:G:0:T:107:N:0:O:1	A:0:C:0:G:0:T:197:N:0:O:0	0,53,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	8143	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	197	38	20	0.03571428571428571	0.0	A:106:C:0:G:4:T:0:N:0:O:2	A:197:C:0:G:0:T:0:N:0:O:0	1,44,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	8379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	205	38	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:205:C:0:G:0:T:0:N:0:O:0	2,48,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	205	38	20	0.05263157894736842	0.0	A:0:C:6:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:205:N:0:O:0	0,66,6,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	192	38	20	0.027777777777777776	0.0	A:3:C:0:G:102:T:0:N:0:O:3	A:0:C:0:G:191:T:1:N:0:O:0	3,35,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	191	38	20	0.021739130434782608	0.0	A:2:C:0:G:0:T:90:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	2,40,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	9172	T	C	C	17	accept high frequency variant	Pass	False	True	True	119	192	38	20	1.0	1.0	A:0:C:119:G:0:T:0:N:0:O:0	A:0:C:192:G:0:T:0:N:0:O:0	51,51,68,68	558.474	1804.7	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	200	38	20	0.056074766355140186	0.0	A:0:C:101:G:0:T:6:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,50,6,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	200	38	20	0.031746031746031744	0.005	A:0:C:0:G:121:T:4:N:0:O:1	A:0:C:0:G:199:T:1:N:0:O:0	0,53,4,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	262	396	38	20	0.022900763358778626	0.0	A:0:C:256:G:0:T:6:N:0:O:0	A:0:C:396:G:0:T:0:N:0:O:0	1,135,5,127	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	9893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	192	38	20	0.02142857142857143	0.0	A:0:C:120:G:0:T:3:N:0:O:17	A:0:C:192:G:0:T:0:N:0:O:0	0,83,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	191	38	20	0.06930693069306931	0.0	A:0:C:91:G:0:T:7:N:0:O:3	A:0:C:191:G:0:T:0:N:0:O:0	0,57,7,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	10807	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	201	38	20	0.020202020202020204	0.0	A:95:C:2:G:0:T:0:N:0:O:2	A:201:C:0:G:0:T:0:N:0:O:0	0,60,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	10827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	201	38	20	0.02197802197802198	0.004975124378109453	A:2:C:0:G:89:T:0:N:0:O:0	A:1:C:0:G:200:T:0:N:0:O:0	1,54,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	201	38	20	0.034482758620689655	0.0	A:0:C:84:G:0:T:3:N:0:O:0	A:0:C:201:G:0:T:0:N:0:O:0	0,57,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	201	38	20	0.02564102564102564	0.004975124378109453	A:3:C:0:G:108:T:0:N:0:O:6	A:1:C:0:G:200:T:0:N:0:O:0	3,34,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	10948	A	G	G	13	new position validated by illumina	Pass	False	True	True	129	201	38	20	0.9224806201550387	1.0	A:0:C:0:G:119:T:0:N:0:O:10	A:0:C:0:G:201:T:0:N:0:O:0	53,63,66,66	133.216	1347.3	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	188	38	20	0.05154639175257732	0.0	A:0:C:0:G:5:T:92:N:0:O:0	A:0:C:0:G:0:T:188:N:0:O:0	5,69,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	62	190	38	20	0.06451612903225806	0.0	A:0:C:0:G:57:T:4:N:0:O:1	A:0:C:0:G:190:T:0:N:0:O:0	4,34,0,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11446	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	195	38	20	0.020618556701030927	0.0	A:92:C:0:G:0:T:2:N:0:O:3	A:195:C:0:G:0:T:0:N:0:O:0	0,64,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	195	38	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	2,47,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	195	38	20	0.020618556701030927	0.0	A:93:C:0:G:0:T:2:N:0:O:2	A:195:C:0:G:0:T:0:N:0:O:0	2,56,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	197	38	20	0.06666666666666667	0.0	A:0:C:70:G:0:T:5:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,66,5,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	79	199	38	20	0.02531645569620253	0.0	A:75:C:0:G:0:T:2:N:0:O:2	A:199:C:0:G:0:T:0:N:0:O:0	2,47,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	11996	A	T	A	1	near depth threshold	Alarm	False	False	True	32	197	38	20	0.03125	0.0	A:31:C:0:G:0:T:1:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	0,14,1,18	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	70	197	38	20	0.04285714285714286	0.0	A:0:C:0:G:67:T:3:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	0,22,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	390	38	20	0.02040816326530612	0.0	A:2:C:0:G:94:T:0:N:0:O:2	A:0:C:0:G:390:T:0:N:0:O:0	2,28,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12242	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	194	38	20	0.02040816326530612	0.0	A:0:C:48:G:0:T:1:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,31,1,18	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	195	38	20	0.015873015873015872	0.0	A:1:C:0:G:48:T:0:N:0:O:14	A:0:C:0:G:194:T:0:N:0:O:1	0,50,1,13	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	168	386	38	20	0.023809523809523808	0.0	A:1:C:0:G:4:T:163:N:0:O:0	A:0:C:0:G:0:T:386:N:0:O:0	0,101,4,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12453	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	389	38	20	0.02040816326530612	0.0	A:0:C:143:G:0:T:3:N:0:O:1	A:0:C:389:G:0:T:0:N:0:O:0	0,94,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	195	38	20	0.020202020202020204	0.0	A:2:C:95:G:0:T:0:N:0:O:2	A:0:C:195:G:0:T:0:N:0:O:0	0,52,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12527	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	195	38	20	0.02702702702702703	0.0	A:108:C:0:G:3:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	3,45,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	195	38	20	0.02564102564102564	0.0	A:72:C:0:G:2:T:0:N:0:O:4	A:195:C:0:G:0:T:0:N:0:O:0	2,35,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	195	38	20	0.022988505747126436	0.0	A:0:C:84:G:0:T:2:N:0:O:1	A:0:C:195:G:0:T:0:N:0:O:0	0,65,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12705	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	195	38	20	0.027522935779816515	0.0	A:0:C:3:G:0:T:106:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	0,66,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	197	38	20	0.019417475728155338	0.0	A:97:C:0:G:2:T:0:N:0:O:4	A:197:C:0:G:0:T:0:N:0:O:0	2,38,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	197	38	20	0.041666666666666664	0.005076142131979695	A:0:C:4:G:0:T:92:N:0:O:0	A:0:C:1:G:0:T:196:N:0:O:0	0,48,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	197	38	20	0.06666666666666667	0.0	A:8:C:0:G:107:T:0:N:0:O:5	A:0:C:0:G:197:T:0:N:0:O:0	8,42,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12963	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	197	38	20	0.028846153846153848	0.0	A:3:C:0:G:99:T:0:N:0:O:2	A:0:C:0:G:197:T:0:N:0:O:0	3,31,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	197	38	20	0.07766990291262135	0.0	A:93:C:0:G:8:T:0:N:0:O:2	A:197:C:0:G:0:T:0:N:0:O:0	8,32,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	197	38	20	0.044444444444444446	0.0	A:0:C:86:G:0:T:4:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,47,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	258	210	38	20	0.023255813953488372	0.0	A:0:C:250:G:0:T:6:N:0:O:2	A:0:C:210:G:0:T:0:N:0:O:0	3,81,3,177	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13424	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	187	38	20	0.019801980198019802	0.0	A:2:C:98:G:0:T:0:N:0:O:1	A:0:C:187:G:0:T:0:N:0:O:0	1,56,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13426	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	187	38	20	0.031746031746031744	0.0	A:0:C:60:G:1:T:2:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,22,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	187	38	20	0.19047619047619047	0.0	A:0:C:51:G:0:T:12:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,51,12,12	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	187	38	20	0.03773584905660377	0.0	A:4:C:0:G:98:T:0:N:0:O:4	A:0:C:0:G:187:T:0:N:0:O:0	4,31,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	187	38	20	0.02564102564102564	0.0	A:0:C:76:G:0:T:2:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,43,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	199	38	20	0.02531645569620253	0.0	A:0:C:72:G:0:T:2:N:0:O:5	A:0:C:199:G:0:T:0:N:0:O:0	0,9,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	199	38	20	0.019417475728155338	0.0	A:95:C:0:G:1:T:2:N:0:O:5	A:199:C:0:G:0:T:0:N:0:O:0	0,56,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	190	38	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	2,31,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	14176	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	190	38	20	0.024193548387096774	0.0	A:119:C:0:G:3:T:0:N:0:O:2	A:190:C:0:G:0:T:0:N:0:O:0	3,54,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	203	38	20	0.02097902097902098	0.0	A:0:C:120:G:0:T:3:N:0:O:20	A:0:C:201:G:0:T:0:N:0:O:2	0,77,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	99	201	38	20	1.0	1.0	A:0:C:0:G:0:T:99:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	47,47,52,52	343.703	1390.7	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	201	38	20	0.038461538461538464	0.0	A:4:C:0:G:100:T:0:N:0:O:0	A:0:C:0:G:201:T:0:N:0:O:0	4,32,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	198	38	20	0.03409090909090909	0.0	A:83:C:0:G:0:T:3:N:0:O:2	A:198:C:0:G:0:T:0:N:0:O:0	3,58,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	198	38	20	0.04424778761061947	0.0	A:102:C:0:G:5:T:0:N:0:O:6	A:198:C:0:G:0:T:0:N:0:O:0	5,88,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	196	38	20	0.037383177570093455	0.0	A:102:C:0:G:4:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	4,41,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	196	38	20	0.03389830508474576	0.0	A:4:C:0:G:114:T:0:N:0:O:0	A:0:C:0:G:195:T:1:N:0:O:0	4,39,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	196	38	20	0.03488372093023256	0.0	A:0:C:3:G:0:T:81:N:0:O:2	A:0:C:0:G:0:T:196:N:0:O:0	0,70,3,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	197	383	38	20	0.030456852791878174	0.0	A:0:C:173:G:0:T:6:N:0:O:18	A:0:C:383:G:0:T:0:N:0:O:0	0,164,6,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	15333	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	194	38	20	0.02564102564102564	0.0	A:114:C:0:G:3:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	3,49,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	194	38	20	0.020833333333333332	0.0	A:0:C:94:G:0:T:2:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,65,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	201	38	20	0.04081632653061224	0.0	A:6:C:0:G:140:T:0:N:0:O:1	A:0:C:0:G:200:T:1:N:0:O:0	6,97,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	15930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	202	38	20	0.05217391304347826	0.0	A:0:C:6:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:202:N:0:O:0	1,56,5,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	202	38	20	0.07142857142857142	0.0	A:1:C:64:G:0:T:5:N:0:O:0	A:0:C:202:G:0:T:0:N:0:O:0	0,36,5,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	202	38	20	0.031578947368421054	0.0	A:0:C:90:G:0:T:3:N:0:O:2	A:0:C:202:G:0:T:0:N:0:O:0	0,63,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	16658	C	T	T	17	accept high frequency variant	Pass	False	True	True	126	225	38	20	0.9841269841269841	1.0	A:0:C:1:G:0:T:124:N:0:O:1	A:0:C:0:G:0:T:225:N:0:O:0	67,67,57,59	70.0	1284.4	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	16713	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	221	38	20	0.02459016393442623	0.0	A:0:C:3:G:0:T:111:N:0:O:8	A:0:C:0:G:0:T:221:N:0:O:0	0,70,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	16717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	206	38	20	0.02127659574468085	0.0	A:90:C:0:G:2:T:0:N:0:O:2	A:206:C:0:G:0:T:0:N:0:O:0	2,37,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	16718	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	206	38	20	0.023809523809523808	0.0	A:2:C:0:G:81:T:0:N:0:O:1	A:0:C:0:G:205:T:1:N:0:O:0	2,22,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	203	38	20	0.05434782608695652	0.0	A:5:C:0:G:83:T:0:N:0:O:4	A:0:C:0:G:203:T:0:N:0:O:0	5,27,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	198	38	20	0.024390243902439025	0.0	A:0:C:3:G:0:T:119:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:0	0,71,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	196	38	20	0.025974025974025976	0.0	A:0:C:2:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,33,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	196	38	20	0.024096385542168676	0.00510204081632653	A:0:C:0:G:2:T:78:N:0:O:3	A:0:C:7:G:1:T:188:N:0:O:0	0,33,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17125	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	386	38	20	0.022598870056497175	0.0	A:0:C:172:G:0:T:4:N:0:O:1	A:2:C:384:G:0:T:0:N:0:O:0	1,104,3,73	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	17144	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	194	38	20	0.030303030303030304	0.0	A:2:C:0:G:64:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	2,39,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	194	38	20	0.05333333333333334	0.0	A:4:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	4,17,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	194	38	20	0.041666666666666664	0.0	A:3:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	3,15,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	194	38	20	0.0375	0.0	A:3:C:0:G:1:T:74:N:0:O:2	A:0:C:0:G:0:T:194:N:0:O:0	3,21,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	189	38	20	0.034482758620689655	0.005291005291005291	A:0:C:83:G:0:T:3:N:0:O:1	A:0:C:188:G:0:T:1:N:0:O:0	0,59,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	189	38	20	0.0625	0.0	A:7:C:0:G:105:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	7,43,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	189	38	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,55,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	189	38	20	0.029411764705882353	0.0	A:0:C:95:G:0:T:3:N:0:O:4	A:0:C:189:G:0:T:0:N:0:O:0	0,51,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	122	189	38	20	0.03278688524590164	0.0	A:109:C:0:G:0:T:4:N:0:O:9	A:189:C:0:G:0:T:0:N:0:O:0	0,72,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	215	380	38	20	0.027906976744186046	0.0	A:0:C:201:G:0:T:6:N:0:O:8	A:0:C:380:G:0:T:0:N:0:O:0	0,133,6,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	196	38	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:1	2,36,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	195	38	20	0.02	0.0	A:96:C:0:G:2:T:0:N:0:O:2	A:195:C:0:G:0:T:0:N:0:O:0	2,34,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	195	38	20	0.045454545454545456	0.0	A:4:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	4,26,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	18245	A	T	A	16	ignore low frequency variant	Pass	False	False	True	148	192	38	20	0.02027027027027027	0.0	A:127:C:0:G:0:T:3:N:0:O:18	A:192:C:0:G:0:T:0:N:0:O:0	2,82,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	198	38	20	0.02564102564102564	0.0	A:0:C:152:G:0:T:4:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,101,4,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	117	211	38	20	0.03418803418803419	0.0	A:0:C:0:G:4:T:112:N:0:O:1	A:0:C:0:G:0:T:211:N:0:O:0	4,46,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	18673	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	195	38	20	0.02727272727272727	0.0	A:106:C:0:G:3:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	2,57,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	195	38	20	0.046875	0.0	A:3:C:0:G:60:T:0:N:0:O:1	A:0:C:0:G:195:T:0:N:0:O:0	3,17,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	18832	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	195	38	20	0.024193548387096774	0.0	A:3:C:0:G:121:T:0:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	3,63,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	19101	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	196	38	20	0.025157232704402517	0.0	A:4:C:0:G:154:T:0:N:0:O:1	A:0:C:0:G:196:T:0:N:0:O:0	3,49,1,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	196	38	20	0.040268456375838924	0.0	A:6:C:0:G:141:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	6,36,0,113	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	200	38	20	0.08860759493670886	0.0	A:0:C:71:G:0:T:7:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,65,7,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	170	192	38	20	0.029411764705882353	0.0	A:5:C:0:G:0:T:134:N:0:O:31	A:0:C:0:G:0:T:192:N:0:O:0	0,60,5,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	192	38	20	0.04716981132075472	0.0	A:101:C:0:G:0:T:5:N:0:O:0	A:192:C:0:G:0:T:0:N:0:O:0	0,59,5,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	19824	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	192	38	20	0.02586206896551724	0.0	A:3:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:192:T:0:N:0:O:0	2,40,1,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	200	38	20	0.041237113402061855	0.0	A:0:C:92:G:0:T:4:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,45,4,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	200	38	20	0.04040404040404041	0.0	A:0:C:87:G:0:T:4:N:0:O:8	A:0:C:200:G:0:T:0:N:0:O:0	0,50,4,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	20395	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	199	38	20	0.02564102564102564	0.0	A:113:C:0:G:0:T:3:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	3,62,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	20615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	181	199	38	20	0.022099447513812154	0.0	A:4:C:0:G:171:T:0:N:0:O:6	A:0:C:0:G:199:T:0:N:0:O:0	4,118,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	20668	G	A	G	16	ignore low frequency variant	Pass	False	False	True	161	199	38	20	0.031055900621118012	0.0	A:5:C:0:G:153:T:0:N:0:O:3	A:0:C:0:G:199:T:0:N:0:O:0	5,117,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	196	38	20	0.02912621359223301	0.0	A:99:C:0:G:3:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	1,21,2,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	196	38	20	0.022058823529411766	0.02040816326530612	A:3:C:0:G:126:T:0:N:0:O:7	A:4:C:0:G:192:T:0:N:0:O:0	1,42,2,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	196	38	20	0.14444444444444443	0.0	A:0:C:0:G:66:T:13:N:0:O:11	A:0:C:0:G:196:T:0:N:0:O:0	0,62,13,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	269	38	20	0.02459016393442623	0.0	A:0:C:0:G:117:T:3:N:0:O:2	A:0:C:0:G:269:T:0:N:0:O:0	0,62,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	269	38	20	0.05154639175257732	0.0	A:0:C:89:G:0:T:5:N:0:O:3	A:0:C:269:G:0:T:0:N:0:O:0	0,53,5,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	269	38	20	0.029411764705882353	0.0	A:3:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:268:T:1:N:0:O:0	3,28,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	269	38	20	0.017241379310344827	0.0	A:0:C:1:G:0:T:36:N:0:O:21	A:0:C:0:G:0:T:269:N:0:O:0	1,39,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	199	38	20	0.02040816326530612	0.0	A:95:C:0:G:0:T:2:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	0,25,2,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	199	38	20	0.03125	0.0	A:93:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,21,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	199	38	20	0.024193548387096774	0.0	A:3:C:0:G:120:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	3,46,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	196	38	20	0.06944444444444445	0.0	A:0:C:66:G:0:T:5:N:0:O:1	A:0:C:196:G:0:T:0:N:0:O:0	4,21,1,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	196	38	20	0.02727272727272727	0.0	A:0:C:104:G:0:T:3:N:0:O:3	A:0:C:196:G:0:T:0:N:0:O:0	0,90,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	196	38	20	0.02912621359223301	0.0	A:0:C:3:G:0:T:100:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,86,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21814	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	196	38	20	0.02608695652173913	0.0	A:110:C:0:G:3:T:0:N:0:O:2	A:195:C:0:G:0:T:1:N:0:O:0	3,63,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	196	38	20	0.030927835051546393	0.0	A:94:C:0:G:3:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	3,41,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	191	38	20	0.04065040650406504	0.0	A:5:C:0:G:118:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	5,55,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	191	38	20	0.0234375	0.0	A:3:C:0:G:125:T:0:N:0:O:0	A:0:C:0:G:190:T:1:N:0:O:0	2,60,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	191	38	20	0.02459016393442623	0.0	A:0:C:119:G:0:T:3:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	3,111,0,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	191	38	20	0.037383177570093455	0.0	A:0:C:0:G:4:T:102:N:0:O:1	A:0:C:0:G:0:T:191:N:0:O:0	4,40,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	191	38	20	0.03184713375796178	0.0	A:0:C:150:G:0:T:5:N:0:O:2	A:0:C:191:G:0:T:0:N:0:O:0	0,119,5,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22429	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	274	38	20	0.023809523809523808	0.0	A:81:C:0:G:2:T:0:N:0:O:1	A:274:C:0:G:0:T:0:N:0:O:0	1,39,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22467	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	274	38	20	0.025	0.0	A:0:C:78:G:0:T:2:N:0:O:0	A:0:C:274:G:0:T:0:N:0:O:0	0,45,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	187	38	20	0.024390243902439025	0.0	A:0:C:77:G:0:T:2:N:0:O:3	A:0:C:187:G:0:T:0:N:0:O:0	2,12,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	187	38	20	0.037037037037037035	0.0	A:3:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:187:T:0:N:0:O:0	3,21,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	182	198	38	20	0.027472527472527472	0.0	A:0:C:0:G:5:T:147:N:0:O:30	A:0:C:0:G:0:T:198:N:0:O:0	0,116,5,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	22988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	198	38	20	0.02127659574468085	0.0	A:3:C:1:G:136:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	3,56,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	23401	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	197	38	20	0.02459016393442623	0.005076142131979695	A:3:C:0:G:118:T:0:N:0:O:1	A:1:C:0:G:196:T:0:N:0:O:0	3,50,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	197	38	20	0.9328358208955224	1.0	A:0:C:0:G:125:T:0:N:0:O:9	A:0:C:0:G:197:T:0:N:0:O:0	51,60,74,74	271.484	1665.9	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	200	38	20	0.020833333333333332	0.0	A:2:C:0:G:90:T:0:N:0:O:4	A:0:C:0:G:200:T:0:N:0:O:0	2,26,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	187	38	20	0.10852713178294573	0.0	A:0:C:115:G:0:T:14:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,95,14,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	187	38	20	0.020689655172413793	0.0053475935828877	A:0:C:3:G:1:T:141:N:0:O:0	A:0:C:1:G:0:T:186:N:0:O:0	0,98,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	191	187	38	20	0.03664921465968586	0.0	A:184:C:0:G:0:T:7:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	6,95,1,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	187	38	20	0.06862745098039216	0.0	A:7:C:0:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	6,21,1,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	187	38	20	0.028037383177570093	0.0	A:0:C:104:G:0:T:3:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,83,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24243	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	192	38	20	0.024691358024691357	0.0	A:2:C:0:G:1:T:74:N:0:O:4	A:0:C:0:G:0:T:192:N:0:O:0	0,65,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	192	38	20	0.025974025974025976	0.0	A:0:C:69:G:0:T:2:N:0:O:6	A:1:C:191:G:0:T:0:N:0:O:0	0,73,2,4	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	192	38	20	0.04950495049504951	0.0	A:5:C:0:G:94:T:0:N:0:O:2	A:0:C:0:G:192:T:0:N:0:O:0	5,31,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	192	38	20	0.030927835051546393	0.0	A:3:C:0:G:89:T:0:N:0:O:5	A:0:C:0:G:192:T:0:N:0:O:0	3,25,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	192	38	20	0.0196078431372549	0.0	A:2:C:0:G:94:T:0:N:0:O:6	A:0:C:0:G:192:T:0:N:0:O:0	0,60,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	198	38	20	0.023809523809523808	0.005050505050505051	A:3:C:121:G:0:T:0:N:0:O:2	A:1:C:197:G:0:T:0:N:0:O:0	3,83,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24569	A	G	A	16	ignore low frequency variant	Pass	False	False	True	164	196	38	20	0.024390243902439025	0.0	A:159:C:0:G:4:T:0:N:0:O:1	A:195:C:1:G:0:T:0:N:0:O:0	3,90,1,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	198	38	20	0.019736842105263157	0.0	A:0:C:147:G:0:T:3:N:0:O:2	A:1:C:197:G:0:T:0:N:0:O:0	0,114,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	198	38	20	0.03333333333333333	0.0	A:0:C:115:G:0:T:4:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,108,4,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	193	38	20	0.02040816326530612	0.0	A:3:C:0:G:128:T:0:N:0:O:16	A:0:C:0:G:193:T:0:N:0:O:0	3,70,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	193	38	20	0.06493506493506493	0.0	A:5:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	0,37,5,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	193	38	20	0.031578947368421054	0.0	A:1:C:0:G:3:T:91:N:0:O:0	A:0:C:0:G:0:T:193:N:0:O:0	0,58,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24928	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	193	38	20	0.022988505747126436	0.0	A:2:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	0,57,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24929	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	193	38	20	0.021505376344086023	0.0	A:2:C:1:G:0:T:89:N:0:O:1	A:0:C:0:G:0:T:193:N:0:O:0	0,54,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24959	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	193	38	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	3,48,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25125	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	196	38	20	0.028037383177570093	0.0	A:104:C:0:G:3:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	3,54,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	196	38	20	0.031578947368421054	0.0	A:92:C:3:G:0:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,48,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25460	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	194	38	20	0.02654867256637168	0.0	A:0:C:110:G:0:T:3:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	1,50,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	194	38	20	0.02	0.0	A:0:C:2:G:0:T:96:N:0:O:2	A:0:C:0:G:0:T:194:N:0:O:0	0,62,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	194	38	20	0.028037383177570093	0.0	A:103:C:0:G:0:T:3:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	3,47,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	194	38	20	0.018518518518518517	0.0	A:0:C:97:G:0:T:2:N:0:O:9	A:0:C:194:G:0:T:0:N:0:O:0	0,56,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25560	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	193	38	20	0.04	0.0	A:0:C:4:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:193:N:0:O:0	4,31,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25611	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	194	38	20	0.02127659574468085	0.0	A:0:C:90:G:0:T:2:N:0:O:2	A:0:C:194:G:0:T:0:N:0:O:0	0,72,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	120	196	38	20	0.03333333333333333	0.0	A:4:C:87:G:0:T:0:N:0:O:29	A:0:C:196:G:0:T:0:N:0:O:0	4,79,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	196	38	20	0.06097560975609756	0.0	A:75:C:5:G:0:T:0:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	3,56,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25876	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	196	38	20	0.020618556701030927	0.0	A:92:C:0:G:2:T:2:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	1,58,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	196	38	20	0.08536585365853659	0.0	A:73:C:0:G:7:T:0:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	7,43,0,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	196	38	20	0.022727272727272728	0.0	A:0:C:84:G:0:T:2:N:0:O:2	A:0:C:196:G:0:T:0:N:0:O:0	1,62,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	61	197	38	20	0.04918032786885246	0.0	A:57:C:3:G:0:T:0:N:0:O:1	A:197:C:0:G:0:T:0:N:0:O:0	3,20,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	195	38	20	0.023809523809523808	0.0	A:81:C:0:G:2:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	2,44,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	196	38	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,47,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	25960	A	G	A	16	ignore low frequency variant	Pass	False	False	True	237	396	38	20	0.02531645569620253	0.0	A:231:C:0:G:6:T:0:N:0:O:0	A:396:C:0:G:0:T:0:N:0:O:0	6,132,0,105	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	203	38	20	0.02564102564102564	0.0	A:112:C:0:G:3:T:0:N:0:O:2	A:203:C:0:G:0:T:0:N:0:O:0	3,55,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26206	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	194	38	20	0.024193548387096774	0.0	A:119:C:0:G:3:T:0:N:0:O:2	A:194:C:0:G:0:T:0:N:0:O:0	3,66,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	197	38	20	0.031496062992125984	0.0	A:0:C:92:G:0:T:4:N:0:O:31	A:0:C:197:G:0:T:0:N:0:O:0	0,107,4,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	197	38	20	0.12195121951219512	0.0	A:10:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	10,24,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	395	38	20	0.11666666666666667	0.0	A:0:C:159:G:0:T:21:N:0:O:0	A:1:C:394:G:0:T:0:N:0:O:0	0,138,21,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	207	395	38	20	0.05314009661835749	0.0	A:0:C:11:G:0:T:196:N:0:O:0	A:1:C:0:G:0:T:394:N:0:O:0	0,144,11,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26625	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	201	38	20	0.020618556701030927	0.0	A:0:C:92:G:0:T:2:N:0:O:3	A:1:C:200:G:0:T:0:N:0:O:0	0,54,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	201	38	20	0.02702702702702703	0.0	A:0:C:0:G:3:T:108:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	1,47,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	201	38	20	0.056179775280898875	0.0	A:5:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:201:T:0:N:0:O:0	5,7,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	26730	G	T	T	17	accept high frequency variant	Pass	True	True	True	114	201	38	20	0.7719298245614035	1.0	A:0:C:0:G:0:T:88:N:0:O:26	A:0:C:0:G:0:T:201:N:0:O:0	31,57,57,57	60.206	1604.7	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	201	38	20	0.046511627906976744	0.0	A:0:C:78:G:1:T:4:N:0:O:3	A:0:C:201:G:0:T:0:N:0:O:0	0,51,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27006	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	187	38	20	0.023809523809523808	0.0	A:81:C:0:G:2:T:0:N:0:O:1	A:187:C:0:G:0:T:0:N:0:O:0	1,25,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	187	38	20	0.030303030303030304	0.0	A:96:C:0:G:3:T:0:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	3,36,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	187	38	20	0.029850746268656716	0.0	A:2:C:0:G:65:T:0:N:0:O:0	A:0:C:0:G:186:T:1:N:0:O:0	2,12,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	187	38	20	0.05194805194805195	0.0	A:0:C:72:G:0:T:4:N:0:O:1	A:0:C:187:G:0:T:0:N:0:O:0	0,58,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27117	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	187	38	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:100:N:0:O:1	A:0:C:0:G:0:T:187:N:0:O:0	0,52,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27154	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	187	38	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	1,29,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27224	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	199	38	20	0.021052631578947368	0.0	A:93:C:0:G:2:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	2,22,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	199	38	20	0.025210084033613446	0.0	A:3:C:0:G:116:T:0:N:0:O:0	A:0:C:0:G:198:T:1:N:0:O:0	3,49,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	199	38	20	0.024	0.0	A:122:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,51,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27471	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	199	38	20	0.035398230088495575	0.0	A:1:C:4:G:0:T:107:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	1,55,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	194	38	20	0.022727272727272728	0.0	A:81:C:0:G:2:T:0:N:0:O:5	A:194:C:0:G:0:T:0:N:0:O:0	2,45,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.0196078431372549	0.005154639175257732	A:2:C:97:G:0:T:0:N:0:O:3	A:1:C:193:G:0:T:0:N:0:O:0	2,65,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	172	194	38	20	0.01744186046511628	0.0	A:121:C:0:G:0:T:3:N:0:O:48	A:194:C:0:G:0:T:0:N:0:O:0	3,128,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28167	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	194	38	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:193:T:1:N:0:O:0	0,55,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	193	38	20	0.024691358024691357	0.0	A:0:C:2:G:0:T:78:N:0:O:1	A:0:C:0:G:0:T:193:N:0:O:0	2,40,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28221	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	194	38	20	0.022222222222222223	0.0	A:2:C:0:G:84:T:0:N:0:O:4	A:0:C:0:G:194:T:0:N:0:O:0	2,24,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28400	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	194	38	20	0.02564102564102564	0.0	A:1:C:73:G:0:T:2:N:0:O:2	A:0:C:194:G:0:T:0:N:0:O:0	0,48,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	156	194	38	20	0.019230769230769232	0.0	A:0:C:0:G:3:T:119:N:0:O:34	A:0:C:0:G:0:T:194:N:0:O:0	0,46,3,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28613	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	194	38	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	0,46,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	194	38	20	0.04285714285714286	0.0	A:0:C:64:G:0:T:3:N:0:O:3	A:0:C:194:G:0:T:0:N:0:O:0	0,22,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28678	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	194	38	20	0.020202020202020204	0.0	A:0:C:2:G:1:T:96:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,41,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	280	38	20	0.023809523809523808	0.0	A:81:C:0:G:2:T:0:N:0:O:1	A:280:C:0:G:0:T:0:N:0:O:0	2,19,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	282	38	20	0.03333333333333333	0.0	A:0:C:85:G:0:T:3:N:0:O:2	A:0:C:282:G:0:T:0:N:0:O:0	0,30,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28788	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	282	38	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:282:C:0:G:0:T:0:N:0:O:0	2,30,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	288	38	20	0.030303030303030304	0.0	A:1:C:62:G:0:T:2:N:0:O:1	A:0:C:288:G:0:T:0:N:0:O:0	0,29,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	119	288	38	20	1.0	0.9930555555555556	A:119:C:0:G:0:T:0:N:0:O:0	A:286:C:0:G:0:T:0:N:0:O:2	27,27,92,92	186.919	2396.7	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	115	288	38	20	1.0	0.9930555555555556	A:115:C:0:G:0:T:0:N:0:O:0	A:286:C:0:G:0:T:0:N:0:O:2	24,24,91,91	186.919	2396.7	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	107	288	38	20	1.0	0.9930555555555556	A:0:C:107:G:0:T:0:N:0:O:0	A:0:C:286:G:0:T:0:N:0:O:2	19,19,88,88	186.919	2396.7	yes	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	386	38	20	0.12149532710280374	0.0	A:0:C:89:G:0:T:13:N:0:O:5	A:1:C:385:G:0:T:0:N:0:O:0	0,91,13,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	85	199	38	20	0.023529411764705882	0.0	A:0:C:83:G:2:T:0:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	2,35,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	99	199	38	20	0.020202020202020204	0.0	A:0:C:2:G:96:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	1,35,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	199	38	20	0.023255813953488372	0.0	A:0:C:2:G:0:T:82:N:0:O:2	A:0:C:0:G:0:T:199:N:0:O:0	0,52,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	29272	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	199	38	20	0.05504587155963303	0.04522613065326633	A:0:C:103:G:0:T:6:N:0:O:0	A:0:C:190:G:0:T:9:N:0:O:0	2,47,4,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	29378	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	196	38	20	0.02127659574468085	0.0	A:92:C:2:G:0:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	0,45,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	196	38	20	0.04	0.0	A:94:C:0:G:4:T:0:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	0,43,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	138	196	38	20	0.021739130434782608	0.0	A:134:C:3:G:0:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	0,51,3,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00020	artic-pipeline	NB03	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00020	artic-pipeline	NB03	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	84	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	165	38	20	0.03076923076923077	0.0	A:0:C:60:G:0:T:2:N:0:O:3	A:2:C:163:G:0:T:0:N:0:O:0	0,43,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	85	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	165	38	20	0.034482758620689655	0.0	A:0:C:2:G:0:T:55:N:0:O:1	A:0:C:0:G:0:T:165:N:0:O:0	0,39,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	185	G	A	G	1	near depth threshold	Alarm	False	False	True	45	207	38	20	0.022222222222222223	0.0	A:1:C:0:G:43:T:0:N:0:O:1	A:0:C:0:G:207:T:0:N:0:O:0	1,31,0,14	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	40	191	38	20	0.95	0.9895287958115183	A:0:C:0:G:0:T:38:N:0:O:2	A:0:C:0:G:0:T:189:N:0:O:2	21,23,17,17	202.247	1293.4	yes	depth near threshold	.	.	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	283	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	191	38	20	0.021739130434782608	0.0	A:1:C:0:G:0:T:45:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	1,30,0,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	191	38	20	0.021739130434782608	0.0	A:45:C:0:G:1:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	1,28,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	305	G	A	G	1	near depth threshold	Alarm	False	False	True	38	191	38	20	0.02631578947368421	0.0	A:1:C:0:G:37:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	1,26,0,12	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	314	A	C	A	16	ignore low frequency variant	Pass	False	False	True	49	191	38	20	0.02040816326530612	0.0	A:48:C:1:G:0:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	0,27,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	336	G	A	G	1	near depth threshold	Alarm	False	False	True	43	188	38	20	0.023255813953488372	0.0	A:1:C:0:G:42:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	1,38,0,5	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	280	38	20	0.027777777777777776	0.0	A:0:C:140:G:0:T:4:N:0:O:0	A:2:C:278:G:0:T:0:N:0:O:0	0,111,4,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	610	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	231	38	20	0.027972027972027972	0.0	A:138:C:0:G:4:T:0:N:0:O:1	A:231:C:0:G:0:T:0:N:0:O:0	4,44,0,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	166	38	20	0.02857142857142857	0.0	A:0:C:3:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:166:N:0:O:0	0,35,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	143	196	38	20	1.0	1.0	A:0:C:0:G:0:T:143:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	82,82,61,61	420.0	1471.3	yes	.	.	.	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	1070	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	196	38	20	0.02	0.0	A:2:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	2,50,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	196	38	20	0.023529411764705882	0.0	A:0:C:83:G:0:T:2:N:0:O:0	A:1:C:195:G:0:T:0:N:0:O:0	1,49,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	197	38	20	0.02112676056338028	0.0	A:3:C:0:G:110:T:0:N:0:O:29	A:0:C:0:G:196:T:0:N:0:O:1	2,68,1,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1189	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	196	38	20	0.020202020202020204	0.0	A:97:C:2:G:0:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,41,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	178	38	20	0.0875	0.0	A:7:C:0:G:73:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	7,24,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1288	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	319	38	20	0.02702702702702703	0.003134796238244514	A:0:C:106:G:0:T:3:N:0:O:2	A:0:C:318:G:0:T:1:N:0:O:0	0,61,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	315	38	20	0.050505050505050504	0.0031746031746031746	A:0:C:94:G:0:T:5:N:0:O:0	A:3:C:311:G:0:T:1:N:0:O:0	1,45,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1441	C	A	C	16	ignore low frequency variant	Pass	False	False	True	120	315	38	20	0.03333333333333333	0.006349206349206349	A:4:C:115:G:0:T:0:N:0:O:1	A:2:C:313:G:0:T:0:N:0:O:0	3,41,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	144	191	38	20	0.020833333333333332	0.0	A:0:C:3:G:0:T:126:N:0:O:15	A:0:C:0:G:0:T:191:N:0:O:0	0,65,3,79	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	221	38	20	0.03571428571428571	0.0	A:0:C:76:G:0:T:3:N:0:O:5	A:0:C:221:G:0:T:0:N:0:O:0	0,22,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1629	A	C	N	2	allele in negative control	Alarm	False	False	False	76	221	38	20	0.039473684210526314	0.0	A:70:C:3:G:0:T:0:N:0:O:3	A:221:C:0:G:0:T:0:N:0:O:0	0,50,3,26	.	.	no	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	232	38	20	0.02197802197802198	0.0	A:2:C:0:G:83:T:0:N:0:O:6	A:0:C:0:G:229:T:3:N:0:O:0	2,15,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1636	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	232	38	20	0.020833333333333332	0.0	A:2:C:0:G:91:T:0:N:0:O:3	A:0:C:0:G:232:T:0:N:0:O:0	1,16,1,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	255	38	20	0.024390243902439025	0.0	A:0:C:2:G:0:T:79:N:0:O:1	A:0:C:0:G:0:T:255:N:0:O:0	1,40,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	255	38	20	0.02040816326530612	0.00784313725490196	A:0:C:0:G:96:T:2:N:0:O:0	A:0:C:0:G:253:T:2:N:0:O:0	0,53,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	1778	T	C	N	2	allele in negative control	Alarm	False	False	False	88	255	38	20	0.045454545454545456	0.0	A:0:C:4:G:0:T:81:N:0:O:3	A:0:C:0:G:0:T:255:N:0:O:0	0,46,4,42	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	177	38	20	0.025423728813559324	0.0	A:0:C:114:G:0:T:3:N:0:O:1	A:0:C:177:G:0:T:0:N:0:O:0	0,61,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2168	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	176	38	20	0.023622047244094488	0.0	A:0:C:3:G:0:T:124:N:0:O:0	A:0:C:0:G:0:T:176:N:0:O:0	0,65,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	171	38	20	0.019801980198019802	0.0	A:2:C:0:G:93:T:0:N:0:O:6	A:0:C:0:G:171:T:0:N:0:O:0	2,25,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	171	38	20	0.08139534883720931	0.0	A:7:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:170:T:1:N:0:O:0	7,15,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	2292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	181	38	20	0.025	0.0	A:116:C:0:G:3:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	3,41,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	178	38	20	0.03260869565217391	0.0	A:3:C:0:G:88:T:0:N:0:O:1	A:0:C:0:G:177:T:1:N:0:O:0	0,16,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	200	38	20	0.023255813953488372	0.0	A:124:C:0:G:3:T:0:N:0:O:2	A:200:C:0:G:0:T:0:N:0:O:0	3,52,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	184	38	20	0.033707865168539325	0.0	A:0:C:82:G:0:T:3:N:0:O:4	A:1:C:183:G:0:T:0:N:0:O:0	0,69,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	184	38	20	0.030303030303030304	0.0	A:0:C:95:G:0:T:3:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,62,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	182	38	20	0.0297029702970297	0.0	A:0:C:3:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:182:N:0:O:0	0,64,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	123	172	38	20	0.7317073170731707	1.0	A:0:C:0:G:0:T:90:N:0:O:33	A:0:C:0:G:0:T:172:N:0:O:0	43,76,47,47	54.765	1398.9	yes	.	.	.	mixed position	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	3132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	171	38	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	0,43,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	163	38	20	0.05405405405405406	0.006134969325153374	A:0:C:0:G:99:T:6:N:0:O:6	A:0:C:0:G:162:T:1:N:0:O:0	0,57,6,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	205	38	20	0.023529411764705882	0.0	A:0:C:2:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:205:N:0:O:0	0,49,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	205	38	20	0.03	0.0	A:96:C:0:G:3:T:1:N:0:O:0	A:205:C:0:G:0:T:0:N:0:O:0	0,51,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	205	38	20	0.0392156862745098	0.0	A:98:C:0:G:0:T:4:N:0:O:0	A:205:C:0:G:0:T:0:N:0:O:0	0,52,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3364	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	205	38	20	0.021505376344086023	0.0	A:89:C:0:G:0:T:2:N:0:O:2	A:205:C:0:G:0:T:0:N:0:O:0	0,51,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	205	38	20	0.02247191011235955	0.0	A:1:C:84:G:0:T:2:N:0:O:2	A:0:C:205:G:0:T:0:N:0:O:0	0,42,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	205	38	20	0.03333333333333333	0.0	A:0:C:86:G:0:T:3:N:0:O:1	A:0:C:205:G:0:T:0:N:0:O:0	0,30,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	196	38	20	0.061855670103092786	0.0	A:0:C:90:G:0:T:6:N:0:O:1	A:1:C:195:G:0:T:0:N:0:O:0	0,81,6,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3553	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	199	38	20	0.026785714285714284	0.0	A:109:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,54,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	203	38	20	0.019417475728155338	0.0	A:2:C:0:G:98:T:0:N:0:O:3	A:0:C:0:G:203:T:0:N:0:O:0	2,46,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	174	38	20	0.04081632653061224	0.0	A:4:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:171:T:3:N:0:O:0	0,72,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	245	370	38	20	0.02040816326530612	0.0	A:240:C:0:G:5:T:0:N:0:O:0	A:370:C:0:G:0:T:0:N:0:O:0	5,89,0,156	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	292	371	38	20	0.02054794520547945	0.0	A:6:C:0:G:264:T:0:N:0:O:22	A:0:C:0:G:370:T:0:N:0:O:1	6,131,0,161	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4255	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	231	38	20	0.03125	0.0	A:3:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:230:T:1:N:0:O:0	3,26,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	231	38	20	0.017857142857142856	0.0	A:2:C:0:G:1:T:83:N:0:O:26	A:0:C:0:G:0:T:231:N:0:O:0	0,56,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	196	435	38	20	0.02040816326530612	0.006896551724137931	A:0:C:0:G:186:T:4:N:0:O:6	A:0:C:0:G:432:T:3:N:0:O:0	0,129,4,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	441	38	20	0.02040816326530612	0.0	A:0:C:139:G:0:T:3:N:0:O:5	A:0:C:441:G:0:T:0:N:0:O:0	0,73,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4427	T	G	T	16	ignore low frequency variant	Pass	False	False	True	124	217	38	20	0.008064516129032258	0.0	A:0:C:0:G:1:T:123:N:0:O:0	A:0:C:0:G:0:T:217:N:0:O:0	0,70,1,54	14.691	.	no	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	217	38	20	0.05172413793103448	0.0	A:100:C:0:G:0:T:6:N:0:O:10	A:217:C:0:G:0:T:0:N:0:O:0	0,70,6,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4841	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	231	38	20	0.027522935779816515	0.0	A:3:C:0:G:83:T:0:N:0:O:23	A:0:C:0:G:230:T:1:N:0:O:0	3,60,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	224	38	20	0.03125	0.0	A:0:C:118:G:0:T:4:N:0:O:6	A:1:C:223:G:0:T:0:N:0:O:0	0,111,4,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4946	T	C	T	16	ignore low frequency variant	Pass	False	False	True	150	222	38	20	0.02	0.0	A:0:C:3:G:0:T:147:N:0:O:0	A:0:C:0:G:0:T:222:N:0:O:0	0,118,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	222	38	20	0.04216867469879518	0.0	A:0:C:148:G:0:T:7:N:0:O:11	A:1:C:221:G:0:T:0:N:0:O:0	0,119,7,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	196	38	20	0.03529411764705882	0.0	A:81:C:0:G:0:T:3:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	3,31,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	5473	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	198	38	20	0.022556390977443608	0.005050505050505051	A:0:C:3:G:0:T:127:N:0:O:3	A:0:C:1:G:0:T:197:N:0:O:0	3,68,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	198	38	20	0.024793388429752067	0.0	A:3:C:0:G:118:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	3,59,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	212	38	20	0.09722222222222222	0.0	A:0:C:64:G:0:T:7:N:0:O:1	A:0:C:212:G:0:T:0:N:0:O:0	0,60,7,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	212	38	20	0.023529411764705882	0.0	A:0:C:2:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:212:N:0:O:0	0,67,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	5935	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	175	38	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:175:C:0:G:0:T:0:N:0:O:0	2,15,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	176	38	20	0.024793388429752067	0.0	A:3:C:0:G:112:T:0:N:0:O:6	A:0:C:0:G:176:T:0:N:0:O:0	3,37,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	184	38	20	0.11764705882352941	0.0	A:0:C:75:G:0:T:10:N:0:O:0	A:1:C:183:G:0:T:0:N:0:O:0	0,58,10,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	184	38	20	0.021897810218978103	0.0	A:0:C:132:G:0:T:3:N:0:O:2	A:2:C:182:G:0:T:0:N:0:O:0	3,70,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	6706	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	185	38	20	0.02	0.0	A:0:C:91:G:0:T:2:N:0:O:7	A:1:C:184:G:0:T:0:N:0:O:0	1,52,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	185	38	20	0.0380952380952381	0.0	A:4:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:185:T:0:N:0:O:0	4,39,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	201	338	38	20	0.029850746268656716	0.0	A:185:C:0:G:6:T:1:N:0:O:9	A:338:C:0:G:0:T:0:N:0:O:0	6,65,0,136	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	338	38	20	0.030612244897959183	0.0029585798816568047	A:0:C:174:G:0:T:6:N:0:O:16	A:0:C:337:G:0:T:1:N:0:O:0	0,116,6,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	6806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	213	339	38	20	0.028169014084507043	0.0	A:207:C:0:G:6:T:0:N:0:O:0	A:339:C:0:G:0:T:0:N:0:O:0	6,81,0,132	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	7031	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	180	38	20	0.021052631578947368	0.0	A:93:C:2:G:0:T:0:N:0:O:0	A:180:C:0:G:0:T:0:N:0:O:0	0,56,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	180	38	20	0.0375	0.0	A:77:C:0:G:0:T:3:N:0:O:0	A:180:C:0:G:0:T:0:N:0:O:0	0,59,3,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	157	38	20	0.027777777777777776	0.0	A:0:C:68:G:0:T:2:N:0:O:2	A:0:C:157:G:0:T:0:N:0:O:0	0,49,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	160	38	20	0.10465116279069768	0.0	A:9:C:0:G:76:T:0:N:0:O:1	A:0:C:0:G:159:T:1:N:0:O:0	9,20,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	7605	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	160	38	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:96:N:0:O:5	A:0:C:0:G:0:T:160:N:0:O:0	1,65,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	8186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	240	38	20	0.022388059701492536	0.0	A:0:C:3:G:0:T:131:N:0:O:0	A:0:C:0:G:0:T:240:N:0:O:0	0,52,3,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	221	38	20	0.03333333333333333	0.0	A:0:C:4:G:0:T:116:N:0:O:0	A:0:C:0:G:0:T:221:N:0:O:0	0,58,4,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	195	38	20	0.05555555555555555	0.0	A:0:C:6:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	0,65,6,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	8612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	188	38	20	0.02040816326530612	0.0	A:2:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	0,27,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	8628	A	T	A	16	ignore low frequency variant	Pass	False	False	True	153	349	38	20	0.026143790849673203	0.0	A:147:C:0:G:1:T:4:N:0:O:1	A:349:C:0:G:0:T:0:N:0:O:0	2,70,2,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	159	38	20	0.07575757575757576	0.0	A:5:C:0:G:60:T:0:N:0:O:1	A:0:C:0:G:159:T:0:N:0:O:0	5,7,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	218	38	20	0.040983606557377046	0.0	A:5:C:0:G:102:T:0:N:0:O:15	A:0:C:0:G:214:T:4:N:0:O:0	5,51,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	218	38	20	0.03418803418803419	0.0	A:4:C:0:G:0:T:104:N:0:O:9	A:0:C:0:G:0:T:218:N:0:O:0	1,61,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	219	38	20	0.031007751937984496	0.0	A:4:C:0:G:125:T:0:N:0:O:0	A:0:C:0:G:218:T:1:N:0:O:0	4,58,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	182	38	20	0.023809523809523808	0.01098901098901099	A:0:C:0:G:122:T:3:N:0:O:1	A:0:C:0:G:180:T:2:N:0:O:0	0,59,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	317	38	20	0.022388059701492536	0.0	A:1:C:127:G:0:T:3:N:0:O:3	A:0:C:317:G:0:T:0:N:0:O:0	0,109,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	160	38	20	0.020833333333333332	0.0	A:0:C:119:G:0:T:4:N:0:O:69	A:0:C:158:G:0:T:0:N:0:O:2	3,103,1,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	156	38	20	0.05084745762711865	0.0	A:0:C:3:G:0:T:56:N:0:O:0	A:0:C:0:G:0:T:156:N:0:O:0	3,32,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	158	38	20	0.027777777777777776	0.0	A:0:C:98:G:0:T:3:N:0:O:7	A:2:C:156:G:0:T:0:N:0:O:0	0,64,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	9893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	224	38	20	0.022556390977443608	0.0	A:0:C:111:G:0:T:3:N:0:O:19	A:1:C:223:G:0:T:0:N:0:O:0	0,61,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	10375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	217	38	20	0.022900763358778626	0.0	A:127:C:0:G:3:T:0:N:0:O:1	A:217:C:0:G:0:T:0:N:0:O:0	3,65,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	186	38	20	0.027777777777777776	0.0	A:0:C:102:G:0:T:3:N:0:O:3	A:0:C:186:G:0:T:0:N:0:O:0	0,72,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	194	38	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	2,35,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.0392156862745098	0.0	A:98:C:0:G:4:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	4,42,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	198	38	20	0.05555555555555555	0.005050505050505051	A:0:C:84:G:0:T:5:N:0:O:1	A:1:C:196:G:0:T:1:N:0:O:0	0,57,5,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	10858	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	198	38	20	0.021052631578947368	0.0	A:93:C:0:G:2:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	0,33,2,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	197	38	20	0.02727272727272727	0.0	A:0:C:0:G:3:T:101:N:0:O:6	A:0:C:0:G:0:T:197:N:0:O:0	0,54,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	198	38	20	0.03731343283582089	0.0	A:5:C:121:G:0:T:0:N:0:O:8	A:0:C:198:G:0:T:0:N:0:O:0	4,52,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	11049	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	173	38	20	0.025	0.0	A:0:C:0:G:2:T:77:N:0:O:1	A:0:C:0:G:0:T:173:N:0:O:0	2,50,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	11050	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	174	38	20	0.024691358024691357	0.0	A:0:C:78:G:0:T:2:N:0:O:1	A:0:C:174:G:0:T:0:N:0:O:0	2,50,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	61	199	38	20	0.06557377049180328	0.0	A:0:C:0:G:57:T:4:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	4,34,0,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	11332	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	296	38	20	0.026490066225165563	0.0	A:143:C:0:G:4:T:0:N:0:O:4	A:296:C:0:G:0:T:0:N:0:O:0	3,101,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	171	38	20	0.02912621359223301	0.0	A:100:C:0:G:0:T:3:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	3,76,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	163	38	20	0.04310344827586207	0.0	A:109:C:0:G:0:T:5:N:0:O:2	A:163:C:0:G:0:T:0:N:0:O:0	5,80,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	151	38	20	0.02631578947368421	0.0	A:3:C:0:G:88:T:0:N:0:O:23	A:0:C:0:G:150:T:1:N:0:O:0	0,91,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	151	38	20	0.03296703296703297	0.0	A:88:C:3:G:0:T:0:N:0:O:0	A:150:C:0:G:1:T:0:N:0:O:0	3,60,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	218	229	38	20	0.03211009174311927	0.0	A:0:C:0:G:7:T:208:N:0:O:3	A:0:C:0:G:0:T:229:N:0:O:0	0,108,7,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12554	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	180	38	20	0.02	0.0	A:2:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:179:T:1:N:0:O:0	0,26,2,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12559	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	180	38	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:180:G:0:T:0:N:0:O:0	0,6,2,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	180	38	20	0.15384615384615385	0.0	A:0:C:54:G:0:T:10:N:0:O:1	A:0:C:180:G:0:T:0:N:0:O:0	0,30,10,35	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	158	38	20	0.041666666666666664	0.0	A:88:C:0:G:4:T:0:N:0:O:4	A:158:C:0:G:0:T:0:N:0:O:0	4,29,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	158	38	20	0.028846153846153848	0.0	A:0:C:98:G:0:T:3:N:0:O:3	A:0:C:158:G:0:T:0:N:0:O:0	0,37,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	158	38	20	0.030534351145038167	0.0	A:4:C:0:G:122:T:0:N:0:O:5	A:0:C:0:G:158:T:0:N:0:O:0	4,47,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	158	38	20	0.04504504504504504	0.0	A:106:C:0:G:5:T:0:N:0:O:0	A:158:C:0:G:0:T:0:N:0:O:0	5,33,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	187	38	20	0.02054794520547945	0.0	A:0:C:135:G:0:T:3:N:0:O:8	A:0:C:187:G:0:T:0:N:0:O:0	0,95,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13378	C	T	C	16	ignore low frequency variant	Pass	False	False	True	235	329	38	20	0.09787234042553192	0.00303951367781155	A:0:C:210:G:0:T:23:N:0:O:2	A:2:C:326:G:0:T:1:N:0:O:0	0,176,23,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	13408	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	236	38	20	0.02197802197802198	0.0	A:2:C:0:G:0:T:88:N:0:O:1	A:0:C:0:G:0:T:236:N:0:O:0	0,49,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	291	38	20	0.04918032786885246	0.0	A:0:C:57:G:0:T:3:N:0:O:1	A:0:C:291:G:0:T:0:N:0:O:0	0,56,3,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13482	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	291	38	20	0.03076923076923077	0.0	A:62:C:0:G:2:T:0:N:0:O:1	A:291:C:0:G:0:T:0:N:0:O:0	0,42,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	291	38	20	0.024691358024691357	0.0	A:77:C:0:G:2:T:0:N:0:O:2	A:291:C:0:G:0:T:0:N:0:O:0	0,59,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	291	38	20	0.11764705882352941	0.0	A:10:C:0:G:67:T:0:N:0:O:8	A:0:C:0:G:290:T:1:N:0:O:0	10,29,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13519	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	291	38	20	0.020202020202020204	0.0	A:95:C:0:G:2:T:0:N:0:O:2	A:291:C:0:G:0:T:0:N:0:O:0	2,44,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13584	C	T	C	1	near depth threshold	Alarm	False	False	True	41	257	38	20	0.024390243902439025	0.0	A:0:C:40:G:0:T:1:N:0:O:0	A:2:C:255:G:0:T:0:N:0:O:0	0,28,1,13	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	215	38	20	0.032520325203252036	0.0	A:4:C:112:G:0:T:0:N:0:O:7	A:0:C:215:G:0:T:0:N:0:O:0	4,72,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	213	38	20	0.018867924528301886	0.0	A:3:C:0:G:127:T:0:N:0:O:29	A:0:C:0:G:210:T:2:N:0:O:1	3,81,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	207	38	20	0.027522935779816515	0.0	A:106:C:0:G:3:T:0:N:0:O:0	A:207:C:0:G:0:T:0:N:0:O:0	3,62,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13644	T	C	T	16	ignore low frequency variant	Pass	False	False	True	299	394	38	20	0.020066889632107024	0.0025380710659898475	A:0:C:6:G:0:T:289:N:0:O:4	A:0:C:1:G:0:T:393:N:0:O:0	0,146,6,153	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	188	318	38	20	0.02127659574468085	0.0	A:4:C:0:G:181:T:0:N:0:O:3	A:0:C:0:G:318:T:0:N:0:O:0	4,59,0,129	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	318	38	20	0.05555555555555555	0.0	A:8:C:0:G:136:T:0:N:0:O:0	A:0:C:0:G:317:T:1:N:0:O:0	8,44,0,100	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	155	318	38	20	0.025806451612903226	0.0031446540880503146	A:0:C:4:G:0:T:148:N:0:O:3	A:0:C:1:G:0:T:317:N:0:O:0	0,88,4,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	296	38	20	0.02564102564102564	0.0033783783783783786	A:113:C:0:G:3:T:0:N:0:O:1	A:295:C:0:G:1:T:0:N:0:O:0	1,54,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	197	38	20	0.05434782608695652	0.0	A:5:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	5,27,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	197	38	20	0.020618556701030927	0.0	A:0:C:0:G:95:T:2:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	2,29,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	14134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	197	38	20	0.02830188679245283	0.0	A:0:C:101:G:0:T:3:N:0:O:2	A:2:C:195:G:0:T:0:N:0:O:0	2,50,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	233	38	20	0.02586206896551724	0.0	A:3:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:232:T:1:N:0:O:0	3,48,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	96	233	38	20	0.9479166666666666	1.0	A:0:C:2:G:0:T:91:N:0:O:3	A:0:C:0:G:0:T:233:N:0:O:0	38,43,53,53	414.466	1350.2	yes	.	.	.	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	244	38	20	0.0380952380952381	0.0	A:4:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:243:T:1:N:0:O:0	4,54,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	14708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	244	38	20	0.024	0.0	A:0:C:118:G:0:T:3:N:0:O:4	A:0:C:244:G:0:T:0:N:0:O:0	0,81,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	14715	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	244	38	20	0.023076923076923078	0.0	A:0:C:3:G:0:T:117:N:0:O:10	A:0:C:0:G:0:T:244:N:0:O:0	2,74,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	14728	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	244	38	20	0.020202020202020204	0.0	A:96:C:0:G:0:T:2:N:0:O:1	A:244:C:0:G:0:T:0:N:0:O:0	1,61,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	217	38	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:217:T:0:N:0:O:0	2,32,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	325	38	20	0.02	0.0	A:0:C:189:G:0:T:4:N:0:O:7	A:4:C:321:G:0:T:0:N:0:O:0	0,164,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	15321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	198	38	20	0.022388059701492536	0.0	A:0:C:3:G:0:T:129:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:0	0,79,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	220	38	20	0.05263157894736842	0.0	A:0:C:72:G:0:T:4:N:0:O:0	A:0:C:219:G:0:T:0:N:0:O:1	0,46,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	219	38	20	0.02197802197802198	0.0	A:0:C:87:G:1:T:2:N:0:O:1	A:0:C:219:G:0:T:0:N:0:O:0	0,59,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	16325	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	186	38	20	0.02564102564102564	0.0	A:0:C:0:G:113:T:3:N:0:O:1	A:0:C:0:G:185:T:0:N:0:O:1	3,65,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	201	38	20	0.027777777777777776	0.0	A:0:C:0:G:105:T:3:N:0:O:0	A:0:C:0:G:201:T:0:N:0:O:0	2,39,1,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	247	38	20	0.02857142857142857	0.0	A:0:C:101:G:0:T:3:N:0:O:1	A:1:C:246:G:0:T:0:N:0:O:0	0,59,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16739	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	194	38	20	0.022058823529411766	0.0	A:133:C:0:G:3:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	3,51,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	171	38	20	0.020202020202020204	0.0	A:0:C:88:G:0:T:2:N:0:O:9	A:0:C:171:G:0:T:0:N:0:O:0	0,58,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16833	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	242	38	20	0.016304347826086956	0.0	A:0:C:129:G:0:T:3:N:0:O:52	A:1:C:241:G:0:T:0:N:0:O:0	0,31,3,153	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	243	38	20	0.024390243902439025	0.0	A:0:C:2:G:0:T:80:N:0:O:0	A:0:C:0:G:0:T:243:N:0:O:0	0,28,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	244	38	20	0.06976744186046512	0.0	A:0:C:0:G:6:T:78:N:0:O:2	A:0:C:5:G:0:T:239:N:0:O:0	0,29,6,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16837	G	T	G	16	ignore low frequency variant	Pass	False	False	True	152	244	38	20	0.03289473684210526	0.012295081967213115	A:4:C:0:G:120:T:5:N:0:O:23	A:0:C:0:G:241:T:3:N:0:O:0	0,36,5,116	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	244	38	20	0.0673076923076923	0.0	A:97:C:0:G:7:T:0:N:0:O:0	A:244:C:0:G:0:T:0:N:0:O:0	0,19,7,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	250	38	20	0.05	0.0	A:76:C:4:G:0:T:0:N:0:O:0	A:249:C:0:G:1:T:0:N:0:O:0	4,22,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17120	T	C	T	16	ignore low frequency variant	Pass	False	False	True	176	251	38	20	0.028409090909090908	0.0	A:0:C:5:G:0:T:170:N:0:O:1	A:0:C:0:G:0:T:251:N:0:O:0	1,45,4,131	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	170	38	20	0.03389830508474576	0.0	A:0:C:57:G:0:T:2:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,47,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	190	38	20	0.029411764705882353	0.0	A:97:C:0:G:3:T:0:N:0:O:2	A:189:C:0:G:0:T:0:N:0:O:1	3,12,0,90	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	188	38	20	0.03225806451612903	0.0	A:3:C:0:G:0:T:89:N:0:O:1	A:0:C:0:G:0:T:188:N:0:O:0	3,13,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	210	38	20	0.031914893617021274	0.0	A:0:C:88:G:0:T:3:N:0:O:3	A:0:C:210:G:0:T:0:N:0:O:0	0,61,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	210	38	20	0.026845637583892617	0.0	A:4:C:0:G:144:T:0:N:0:O:1	A:0:C:0:G:210:T:0:N:0:O:0	3,44,1,105	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	210	38	20	0.03	0.0	A:0:C:97:G:0:T:3:N:0:O:0	A:0:C:210:G:0:T:0:N:0:O:0	0,54,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	210	38	20	0.031007751937984496	0.0	A:0:C:122:G:0:T:4:N:0:O:3	A:2:C:208:G:0:T:0:N:0:O:0	0,53,4,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	173	210	38	20	0.023121387283236993	0.0	A:4:C:0:G:0:T:152:N:0:O:17	A:0:C:0:G:0:T:210:N:0:O:0	2,54,2,119	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	145	210	38	20	0.020689655172413793	0.0	A:130:C:0:G:0:T:3:N:0:O:12	A:210:C:0:G:0:T:0:N:0:O:0	0,70,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	228	320	38	20	0.021929824561403508	0.0	A:1:C:212:G:0:T:5:N:0:O:10	A:3:C:317:G:0:T:0:N:0:O:0	0,123,5,105	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	196	38	20	0.0297029702970297	0.0	A:3:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	0,61,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	196	38	20	0.019417475728155338	0.0	A:0:C:93:G:0:T:2:N:0:O:8	A:0:C:196:G:0:T:0:N:0:O:0	0,72,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	194	38	20	0.031914893617021274	0.0	A:3:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	3,34,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	194	38	20	0.03260869565217391	0.0	A:83:C:0:G:3:T:0:N:0:O:6	A:194:C:0:G:0:T:0:N:0:O:0	3,33,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	194	38	20	0.036585365853658534	0.0	A:3:C:0:G:78:T:0:N:0:O:1	A:0:C:0:G:193:T:1:N:0:O:0	3,27,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	244	295	38	20	0.02459016393442623	0.0	A:6:C:0:G:236:T:0:N:0:O:2	A:0:C:0:G:294:T:1:N:0:O:0	6,112,0,132	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18083	T	C	T	16	ignore low frequency variant	Pass	False	False	True	147	168	38	20	0.02040816326530612	0.0	A:0:C:3:G:0:T:144:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	1,71,2,76	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	18177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	168	38	20	0.027972027972027972	0.0	A:0:C:4:G:0:T:133:N:0:O:6	A:0:C:0:G:0:T:168:N:0:O:0	3,73,1,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	164	282	38	20	0.03048780487804878	0.0	A:5:C:0:G:159:T:0:N:0:O:0	A:0:C:0:G:280:T:2:N:0:O:0	5,14,0,150	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	168	38	20	0.049586776859504134	0.0	A:0:C:115:G:0:T:6:N:0:O:0	A:0:C:168:G:0:T:0:N:0:O:0	0,68,6,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	184	38	20	0.02040816326530612	0.0	A:0:C:1:G:2:T:95:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	2,32,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18374	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	187	38	20	0.020134228187919462	0.0	A:0:C:144:G:0:T:3:N:0:O:2	A:0:C:187:G:0:T:0:N:0:O:0	0,71,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	158	38	20	0.01818181818181818	0.0	A:1:C:0:G:45:T:0:N:0:O:9	A:0:C:0:G:155:T:3:N:0:O:0	0,37,1,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18735	A	T	A	1	near depth threshold	Alarm	False	False	True	37	158	38	20	0.02702702702702703	0.0	A:34:C:0:G:0:T:1:N:0:O:2	A:158:C:0:G:0:T:0:N:0:O:0	0,16,1,21	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	158	38	20	0.02631578947368421	0.0	A:0:C:2:G:0:T:74:N:0:O:0	A:0:C:0:G:0:T:158:N:0:O:0	0,45,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	19071	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	221	38	20	0.037037037037037035	0.004524886877828055	A:1:C:4:G:0:T:103:N:0:O:0	A:0:C:1:G:0:T:220:N:0:O:0	0,56,4,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	221	38	20	0.04424778761061947	0.0	A:5:C:0:G:105:T:0:N:0:O:3	A:0:C:0:G:220:T:1:N:0:O:0	5,21,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	19477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	239	38	20	0.03488372093023256	0.0	A:3:C:0:G:81:T:0:N:0:O:2	A:0:C:0:G:238:T:1:N:0:O:0	3,32,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	226	38	20	0.14634146341463414	0.0	A:0:C:70:G:0:T:12:N:0:O:0	A:0:C:226:G:0:T:0:N:0:O:0	1,56,11,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	19724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	222	38	20	0.023255813953488372	0.0	A:0:C:3:G:0:T:126:N:0:O:0	A:0:C:0:G:0:T:222:N:0:O:0	0,64,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	222	38	20	0.01904761904761905	0.0	A:0:C:2:G:0:T:98:N:0:O:5	A:0:C:0:G:0:T:222:N:0:O:0	0,55,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	19833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	222	38	20	0.022727272727272728	0.0	A:126:C:0:G:3:T:0:N:0:O:3	A:222:C:0:G:0:T:0:N:0:O:0	3,55,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	207	38	20	0.031578947368421054	0.0	A:0:C:90:G:0:T:3:N:0:O:2	A:2:C:205:G:0:T:0:N:0:O:0	0,56,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	183	355	38	20	0.03278688524590164	0.0028169014084507044	A:6:C:0:G:175:T:0:N:0:O:2	A:1:C:0:G:354:T:0:N:0:O:0	6,55,0,128	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	193	38	20	0.02	0.0	A:0:C:0:G:2:T:97:N:0:O:1	A:0:C:0:G:0:T:193:N:0:O:0	2,47,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	207	38	20	0.031746031746031744	0.0	A:4:C:0:G:114:T:0:N:0:O:8	A:0:C:0:G:207:T:0:N:0:O:0	4,78,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	207	38	20	0.021505376344086023	0.0	A:88:C:0:G:2:T:0:N:0:O:3	A:207:C:0:G:0:T:0:N:0:O:0	2,35,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	20676	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	192	38	20	0.022556390977443608	0.0	A:127:C:0:G:3:T:0:N:0:O:3	A:191:C:0:G:0:T:1:N:0:O:0	3,89,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	178	38	20	0.0707070707070707	0.0	A:7:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:177:T:1:N:0:O:0	7,60,0,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	176	38	20	0.059322033898305086	0.0	A:0:C:103:G:0:T:7:N:0:O:8	A:1:C:175:G:0:T:0:N:0:O:0	7,80,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	20993	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	234	38	20	0.02142857142857143	0.0	A:0:C:3:G:0:T:137:N:0:O:0	A:0:C:0:G:0:T:234:N:0:O:0	0,49,3,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	234	38	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:234:C:0:G:0:T:0:N:0:O:0	0,20,2,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	107	38	20	0.12087912087912088	0.0	A:0:C:0:G:72:T:11:N:0:O:8	A:0:C:0:G:107:T:0:N:0:O:0	1,67,10,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	171	38	20	0.03260869565217391	0.0	A:0:C:89:G:0:T:3:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,56,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	189	38	20	0.027777777777777776	0.0	A:2:C:0:G:70:T:0:N:0:O:0	A:0:C:0:G:188:T:1:N:0:O:0	2,58,0,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	154	38	20	0.04	0.0	A:0:C:2:G:0:T:28:N:0:O:20	A:0:C:0:G:0:T:154:N:0:O:0	0,40,2,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	190	38	20	0.023529411764705882	0.0	A:0:C:82:G:0:T:2:N:0:O:1	A:0:C:190:G:0:T:0:N:0:O:0	0,56,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	191	38	20	0.023255813953488372	0.0	A:84:C:0:G:2:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	2,22,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	191	38	20	0.0423728813559322	0.0	A:5:C:0:G:108:T:0:N:0:O:5	A:0:C:0:G:191:T:0:N:0:O:0	5,51,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21452	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	191	38	20	0.023809523809523808	0.005235602094240838	A:3:C:0:G:123:T:0:N:0:O:0	A:1:C:0:G:189:T:1:N:0:O:0	2,62,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	191	38	20	0.022988505747126436	0.0	A:85:C:2:G:0:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	2,46,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21631	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	191	38	20	0.020618556701030927	0.0	A:95:C:2:G:0:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	0,57,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	172	38	20	0.05154639175257732	0.0	A:0:C:87:G:0:T:5:N:0:O:5	A:1:C:171:G:0:T:0:N:0:O:0	2,21,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	172	38	20	0.01834862385321101	0.0	A:0:C:96:G:0:T:2:N:0:O:11	A:1:C:171:G:0:T:0:N:0:O:0	0,74,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	172	38	20	0.02127659574468085	0.005813953488372093	A:0:C:2:G:0:T:92:N:0:O:0	A:0:C:1:G:0:T:171:N:0:O:0	0,70,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	172	38	20	0.02097902097902098	0.0	A:98:C:0:G:0:T:3:N:0:O:42	A:172:C:0:G:0:T:0:N:0:O:0	0,96,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	198	38	20	0.043478260869565216	0.0	A:0:C:0:G:5:T:110:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	5,58,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	218	38	20	0.034782608695652174	0.0	A:4:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:218:T:0:N:0:O:0	4,27,0,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	22713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	218	38	20	0.01948051948051948	0.0	A:0:C:146:G:0:T:3:N:0:O:5	A:2:C:216:G:0:T:0:N:0:O:0	0,62,3,92	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	23305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	164	38	20	0.02564102564102564	0.0	A:114:C:0:G:3:T:0:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	3,67,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	129	164	38	20	0.9224806201550387	1.0	A:0:C:0:G:119:T:0:N:0:O:10	A:0:C:0:G:164:T:0:N:0:O:0	75,85,44,44	60.786	1619.9	yes	.	.	.	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	197	38	20	0.02631578947368421	0.0	A:109:C:0:G:3:T:0:N:0:O:2	A:197:C:0:G:0:T:0:N:0:O:0	3,37,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	198	38	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:1	2,38,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23598	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	200	38	20	0.04	0.0	A:95:C:4:G:0:T:0:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	0,60,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	200	38	20	0.03	0.0	A:0:C:96:G:0:T:3:N:0:O:1	A:1:C:199:G:0:T:0:N:0:O:0	0,67,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	200	38	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	1,30,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	203	38	20	0.05555555555555555	0.0	A:0:C:100:G:0:T:6:N:0:O:2	A:0:C:203:G:0:T:0:N:0:O:0	0,90,6,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	139	203	38	20	0.04316546762589928	0.0	A:133:C:0:G:0:T:6:N:0:O:0	A:203:C:0:G:0:T:0:N:0:O:0	6,89,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	203	38	20	0.08860759493670886	0.0	A:7:C:0:G:0:T:72:N:0:O:0	A:0:C:0:G:0:T:203:N:0:O:0	7,41,0,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	205	38	20	0.06329113924050633	0.0	A:5:C:0:G:73:T:0:N:0:O:1	A:0:C:0:G:205:T:0:N:0:O:0	5,30,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	203	38	20	0.04285714285714286	0.0	A:3:C:0:G:67:T:0:N:0:O:0	A:0:C:0:G:202:T:1:N:0:O:0	2,23,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	199	38	20	0.030612244897959183	0.0	A:0:C:94:G:0:T:3:N:0:O:1	A:1:C:198:G:0:T:0:N:0:O:0	0,84,3,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	263	247	38	20	0.06463878326996197	0.10121457489878542	A:0:C:243:G:0:T:17:N:0:O:3	A:5:C:217:G:0:T:25:N:0:O:0	8,136,9,127	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	165	38	20	0.045454545454545456	0.0	A:0:C:58:G:0:T:3:N:0:O:5	A:0:C:165:G:0:T:0:N:0:O:0	0,56,3,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	165	38	20	0.08653846153846154	0.0	A:9:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:165:T:0:N:0:O:0	9,30,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	165	38	20	0.049019607843137254	0.0	A:5:C:0:G:91:T:0:N:0:O:6	A:0:C:0:G:165:T:0:N:0:O:0	5,26,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25105	A	T	A	16	ignore low frequency variant	Pass	False	False	True	69	176	38	20	0.028985507246376812	0.005681818181818182	A:67:C:0:G:0:T:2:N:0:O:0	A:175:C:0:G:0:T:1:N:0:O:0	1,30,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	176	38	20	0.025210084033613446	0.0	A:113:C:0:G:3:T:0:N:0:O:3	A:176:C:0:G:0:T:0:N:0:O:0	3,68,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25387	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	239	38	20	0.03937007874015748	0.0	A:5:C:0:G:121:T:0:N:0:O:1	A:0:C:0:G:236:T:3:N:0:O:0	5,34,0,93	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	239	38	20	0.038461538461538464	0.0	A:125:C:0:G:5:T:0:N:0:O:0	A:239:C:0:G:0:T:0:N:0:O:0	5,36,0,94	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25411	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	239	38	20	0.020134228187919462	0.008368200836820083	A:144:C:0:G:3:T:0:N:0:O:2	A:237:C:0:G:2:T:0:N:0:O:0	3,61,0,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25553	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	239	38	20	0.023809523809523808	0.0	A:0:C:80:G:0:T:2:N:0:O:2	A:0:C:239:G:0:T:0:N:0:O:0	0,25,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	239	38	20	0.021052631578947368	0.0	A:0:C:0:G:78:T:2:N:0:O:15	A:1:C:0:G:238:T:0:N:0:O:0	2,39,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	238	38	20	0.021505376344086023	0.0	A:0:C:0:G:2:T:91:N:0:O:0	A:0:C:0:G:0:T:238:N:0:O:0	2,36,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	131	239	38	20	0.9923664122137404	1.0	A:0:C:0:G:0:T:130:N:0:O:1	A:0:C:0:G:0:T:239:N:0:O:0	43,44,87,87	280.0	2157.9	yes	.	.	.	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	219	38	20	0.04395604395604396	0.0	A:4:C:0:G:85:T:0:N:0:O:2	A:0:C:0:G:219:T:0:N:0:O:0	4,32,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	220	38	20	0.025	0.0	A:2:C:0:G:76:T:0:N:0:O:2	A:0:C:0:G:220:T:0:N:0:O:0	1,23,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	143	221	38	20	0.027972027972027972	0.0	A:4:C:99:G:0:T:0:N:0:O:40	A:0:C:220:G:0:T:0:N:0:O:1	4,67,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	68	220	38	20	0.07352941176470588	0.0	A:61:C:5:G:0:T:0:N:0:O:2	A:220:C:0:G:0:T:0:N:0:O:0	2,31,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25809	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	220	38	20	0.020833333333333332	0.0	A:92:C:0:G:2:T:0:N:0:O:2	A:220:C:0:G:0:T:0:N:0:O:0	2,52,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	220	38	20	0.0425531914893617	0.0	A:0:C:90:G:0:T:4:N:0:O:0	A:0:C:220:G:0:T:0:N:0:O:0	0,62,4,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	217	38	20	0.021505376344086023	0.0	A:80:C:1:G:1:T:2:N:0:O:9	A:217:C:0:G:0:T:0:N:0:O:0	0,75,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	217	38	20	0.023076923076923078	0.0	A:0:C:120:G:0:T:3:N:0:O:7	A:3:C:214:G:0:T:0:N:0:O:0	1,69,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	216	38	20	0.05504587155963303	0.0	A:100:C:0:G:6:T:0:N:0:O:3	A:216:C:0:G:0:T:0:N:0:O:0	6,50,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	216	38	20	0.025	0.0	A:0:C:78:G:0:T:2:N:0:O:0	A:1:C:215:G:0:T:0:N:0:O:0	1,45,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	178	38	20	0.0625	0.0	A:6:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:178:T:0:N:0:O:0	6,41,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	224	304	38	20	0.022321428571428572	0.0	A:219:C:0:G:5:T:0:N:0:O:0	A:304:C:0:G:0:T:0:N:0:O:0	1,181,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	168	38	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:168:T:0:N:0:O:0	2,53,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	168	38	20	0.04597701149425287	0.011904761904761904	A:0:C:4:G:0:T:83:N:0:O:0	A:0:C:2:G:0:T:166:N:0:O:0	1,63,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	163	38	20	0.029411764705882353	0.0	A:3:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:163:T:0:N:0:O:0	2,60,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	277	276	38	20	0.036101083032490974	0.0	A:0:C:265:G:0:T:10:N:0:O:2	A:3:C:273:G:0:T:0:N:0:O:0	0,237,10,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	301	279	38	20	0.023255813953488372	0.0	A:0:C:7:G:0:T:293:N:0:O:1	A:0:C:0:G:0:T:279:N:0:O:0	0,242,7,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	170	38	20	0.019736842105263157	0.0	A:0:C:145:G:0:T:3:N:0:O:4	A:1:C:169:G:0:T:0:N:0:O:0	3,87,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	173	38	20	0.11926605504587157	0.0	A:13:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	13,22,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	170	38	20	0.027210884353741496	0.0	A:4:C:0:G:141:T:0:N:0:O:2	A:0:C:0:G:170:T:0:N:0:O:0	3,71,1,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	167	170	38	20	0.03592814371257485	0.0	A:6:C:0:G:161:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	6,83,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	154	172	38	20	0.025974025974025976	0.0	A:149:C:0:G:4:T:1:N:0:O:0	A:172:C:0:G:0:T:0:N:0:O:0	4,88,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	26892	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	186	38	20	0.03389830508474576	0.016129032258064516	A:0:C:108:G:0:T:4:N:0:O:6	A:0:C:183:G:0:T:3:N:0:O:0	1,37,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	190	38	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	2,35,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	190	38	20	0.07865168539325842	0.0	A:0:C:82:G:0:T:7:N:0:O:0	A:0:C:190:G:0:T:0:N:0:O:0	0,55,7,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	256	38	20	0.022900763358778626	0.0	A:0:C:3:G:0:T:128:N:0:O:0	A:0:C:0:G:0:T:256:N:0:O:0	0,63,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	185	38	20	0.025974025974025976	0.0	A:72:C:0:G:2:T:0:N:0:O:3	A:185:C:0:G:0:T:0:N:0:O:0	2,36,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	202	38	20	0.0410958904109589	0.0	A:70:C:0:G:3:T:0:N:0:O:0	A:202:C:0:G:0:T:0:N:0:O:0	3,45,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	202	38	20	0.052083333333333336	0.0	A:5:C:87:G:0:T:0:N:0:O:4	A:0:C:202:G:0:T:0:N:0:O:0	5,62,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	173	202	38	20	0.028901734104046242	0.0	A:125:C:0:G:0:T:5:N:0:O:43	A:202:C:0:G:0:T:0:N:0:O:0	5,130,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	202	38	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:202:C:0:G:0:T:0:N:0:O:0	2,55,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	171	168	38	20	0.017543859649122806	0.0	A:0:C:0:G:3:T:124:N:0:O:44	A:1:C:0:G:0:T:167:N:0:O:0	0,61,3,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	168	38	20	0.024691358024691357	0.0	A:2:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:167:T:1:N:0:O:0	0,54,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	167	38	20	0.0380952380952381	0.0	A:0:C:4:G:0:T:101:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	0,54,4,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	240	38	20	0.08247422680412371	0.0	A:0:C:82:G:0:T:8:N:0:O:7	A:0:C:240:G:0:T:0:N:0:O:0	0,26,8,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	259	38	20	0.03508771929824561	0.0	A:4:C:0:G:109:T:0:N:0:O:1	A:0:C:0:G:258:T:1:N:0:O:0	4,5,0,109	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	258	38	20	0.02912621359223301	0.0	A:0:C:100:G:0:T:3:N:0:O:0	A:0:C:258:G:0:T:0:N:0:O:0	0,19,3,84	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	259	38	20	0.034482758620689655	0.0	A:0:C:51:G:0:T:2:N:0:O:5	A:0:C:258:G:0:T:0:N:0:O:1	0,12,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	289	38	20	0.11650485436893204	0.0	A:0:C:87:G:0:T:12:N:0:O:4	A:3:C:286:G:0:T:0:N:0:O:0	0,84,12,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	180	294	38	20	0.022222222222222223	0.0	A:0:C:4:G:0:T:175:N:0:O:1	A:0:C:0:G:0:T:294:N:0:O:0	0,73,4,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	188	38	20	0.027777777777777776	0.0	A:0:C:3:G:0:T:104:N:0:O:1	A:0:C:0:G:0:T:188:N:0:O:0	0,54,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29271	A	C	A	16	ignore low frequency variant	Pass	False	False	True	76	188	38	20	0.02631578947368421	0.0	A:73:C:2:G:0:T:0:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:0	0,48,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	210	38	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:210:C:0:G:0:T:0:N:0:O:0	2,32,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	211	38	20	0.020689655172413793	0.0	A:3:C:0:G:140:T:0:N:0:O:2	A:0:C:0:G:211:T:0:N:0:O:0	3,61,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29744	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	125	38	20	0.02247191011235955	0.0	A:2:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:125:T:0:N:0:O:0	0,28,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	29810	G	A	G	3	illumina variant callers disagree	Alarm	False	False	True	90	132	38	20	0.24444444444444444	0.15151515151515152	A:22:C:0:G:67:T:0:N:0:O:1	A:20:C:0:G:112:T:0:N:0:O:0	13,56,9,34	.	.	maybe	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00023	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00023	artic-pipeline	NB05	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	194	38	20	0.036585365853658534	0.0	A:3:C:1:G:0:T:71:N:0:O:7	A:0:C:0:G:0:T:194:N:0:O:0	0,36,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	194	38	20	0.024691358024691357	0.0	A:79:C:0:G:2:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	2,24,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	63	194	38	20	0.9365079365079365	0.9948453608247423	A:0:C:0:G:0:T:59:N:0:O:4	A:0:C:0:G:0:T:193:N:0:O:1	15,19,44,44	331.243	1577.1	yes	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	391	38	20	0.019801980198019802	0.0	A:0:C:0:G:194:T:4:N:0:O:4	A:0:C:0:G:391:T:0:N:0:O:0	0,81,4,121	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	570	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	198	38	20	0.02142857142857143	0.0	A:136:C:0:G:3:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	3,49,0,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	198	38	20	0.022222222222222223	0.0	A:0:C:0:G:131:T:3:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	0,54,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	776	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	194	38	20	0.02247191011235955	0.0	A:0:C:83:G:0:T:2:N:0:O:4	A:0:C:194:G:0:T:0:N:0:O:0	0,51,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.029411764705882353	0.0	A:98:C:0:G:3:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	3,37,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	802	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	194	38	20	0.021897810218978103	0.0	A:115:C:0:G:3:T:0:N:0:O:19	A:194:C:0:G:0:T:0:N:0:O:0	1,71,2,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	194	38	20	0.025	0.0	A:2:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:194:T:0:N:0:O:0	1,32,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	838	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.0196078431372549	0.0	A:0:C:0:G:2:T:97:N:0:O:3	A:0:C:0:G:0:T:194:N:0:O:0	0,66,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	843	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	194	38	20	0.03	0.0	A:0:C:97:G:0:T:3:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,46,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	194	38	20	0.0379746835443038	0.0	A:3:C:0:G:73:T:0:N:0:O:3	A:0:C:0:G:194:T:0:N:0:O:0	3,26,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1018	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	196	38	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	2,52,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	143	196	38	20	1.0	1.0	A:0:C:0:G:0:T:143:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	93,93,50,50	70.0	1429.5	yes	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	196	38	20	0.03731343283582089	0.0	A:5:C:123:G:0:T:0:N:0:O:6	A:0:C:196:G:0:T:0:N:0:O:0	5,81,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	196	38	20	0.02857142857142857	0.0	A:129:C:0:G:0:T:4:N:0:O:7	A:196:C:0:G:0:T:0:N:0:O:0	4,94,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	196	38	20	0.06329113924050633	0.0	A:0:C:68:G:0:T:5:N:0:O:6	A:0:C:196:G:0:T:0:N:0:O:0	0,41,5,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	196	38	20	0.022222222222222223	0.0	A:2:C:0:G:82:T:0:N:0:O:6	A:0:C:0:G:194:T:2:N:0:O:0	2,40,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1178	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	196	38	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,36,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	204	375	38	20	0.024509803921568627	0.0	A:5:C:0:G:197:T:1:N:0:O:1	A:0:C:0:G:375:T:0:N:0:O:0	3,69,2,135	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	225	376	38	20	0.03111111111111111	0.0	A:7:C:0:G:216:T:0:N:0:O:2	A:0:C:0:G:376:T:0:N:0:O:0	6,90,1,135	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	201	38	20	0.04081632653061224	0.0	A:0:C:92:G:0:T:4:N:0:O:2	A:2:C:199:G:0:T:0:N:0:O:0	0,37,4,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1474	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	201	38	20	0.03669724770642202	0.0	A:0:C:4:G:0:T:105:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	0,29,4,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	195	38	20	0.023529411764705882	0.0	A:81:C:0:G:0:T:2:N:0:O:2	A:195:C:0:G:0:T:0:N:0:O:0	0,58,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1778	T	C	N	2	allele in negative control	Alarm	False	False	False	89	195	38	20	0.033707865168539325	0.0	A:0:C:3:G:0:T:84:N:0:O:2	A:0:C:0:G:0:T:195:N:0:O:0	0,54,3,35	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	1779	C	T	N	2	allele in negative control	Alarm	False	False	False	97	195	38	20	0.030927835051546393	0.0	A:0:C:94:G:0:T:3:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,56,3,41	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	193	38	20	0.029411764705882353	0.0	A:2:C:0:G:66:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	2,30,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	193	38	20	0.03278688524590164	0.0	A:4:C:0:G:117:T:0:N:0:O:1	A:0:C:0:G:193:T:0:N:0:O:0	4,47,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	2441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	197	38	20	0.026785714285714284	0.005076142131979695	A:3:C:0:G:104:T:0:N:0:O:5	A:1:C:0:G:196:T:0:N:0:O:0	3,32,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	2461	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	197	38	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:92:N:0:O:2	A:0:C:0:G:0:T:197:N:0:O:0	0,41,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	183	38	20	0.030534351145038167	0.0	A:127:C:0:G:4:T:0:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	4,54,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	2910	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	156	38	20	0.022556390977443608	0.0	A:3:C:124:G:0:T:0:N:0:O:6	A:0:C:156:G:0:T:0:N:0:O:0	3,37,0,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	156	38	20	0.025	0.0	A:0:C:3:G:0:T:117:N:0:O:0	A:0:C:0:G:0:T:156:N:0:O:0	3,36,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	116	156	38	20	0.7586206896551724	0.9935897435897436	A:0:C:0:G:0:T:88:N:0:O:28	A:0:C:0:G:0:T:155:N:0:O:1	31,59,57,57	209.237	1310.5	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	156	38	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:98:N:0:O:5	A:0:C:0:G:0:T:156:N:0:O:0	0,47,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	100	156	38	20	0.07	0.0	A:0:C:0:G:81:T:7:N:0:O:12	A:0:C:0:G:156:T:0:N:0:O:0	0,51,7,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	184	38	20	0.052083333333333336	0.0	A:0:C:5:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	0,49,5,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	184	38	20	0.029197080291970802	0.0	A:125:C:0:G:4:T:0:N:0:O:8	A:184:C:0:G:0:T:0:N:0:O:0	4,35,0,102	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	184	38	20	0.03296703296703297	0.0	A:3:C:0:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	0,44,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	184	38	20	0.02608695652173913	0.0	A:112:C:0:G:3:T:0:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	0,48,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	184	38	20	0.019417475728155338	0.0	A:0:C:98:G:0:T:2:N:0:O:3	A:0:C:184:G:0:T:0:N:0:O:0	0,54,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	184	38	20	0.030303030303030304	0.0	A:0:C:95:G:0:T:3:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,38,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	189	38	20	0.060240963855421686	0.0	A:0:C:78:G:0:T:5:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,71,5,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	189	38	20	0.0410958904109589	0.0	A:3:C:0:G:70:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	3,41,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3777	C	G	C	16	ignore low frequency variant	Pass	False	False	True	100	189	38	20	0.02	0.0	A:0:C:97:G:2:T:0:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	2,59,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	162	38	20	0.023255813953488372	0.0	A:0:C:0:G:2:T:64:N:0:O:20	A:0:C:0:G:0:T:162:N:0:O:0	1,38,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	166	38	20	0.05714285714285714	0.0	A:0:C:66:G:0:T:4:N:0:O:0	A:0:C:166:G:0:T:0:N:0:O:0	0,63,4,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	166	38	20	0.03488372093023256	0.0	A:0:C:83:G:0:T:3:N:0:O:0	A:0:C:166:G:0:T:0:N:0:O:0	0,63,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	246	352	38	20	0.02032520325203252	0.0	A:240:C:0:G:5:T:0:N:0:O:1	A:352:C:0:G:0:T:0:N:0:O:0	5,94,0,152	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	4170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	187	38	20	0.02	0.0	A:0:C:93:G:0:T:2:N:0:O:5	A:0:C:187:G:0:T:0:N:0:O:0	0,49,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	4207	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	187	38	20	0.023529411764705882	0.0	A:2:C:0:G:78:T:0:N:0:O:5	A:0:C:0:G:186:T:0:N:0:O:1	0,12,2,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	4231	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	187	38	20	0.025423728813559324	0.0	A:113:C:0:G:3:T:0:N:0:O:2	A:187:C:0:G:0:T:0:N:0:O:0	3,45,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	4232	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	187	38	20	0.02459016393442623	0.0	A:3:C:0:G:119:T:0:N:0:O:0	A:0:C:0:G:187:T:0:N:0:O:0	3,46,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	378	38	20	0.024	0.0	A:0:C:120:G:0:T:3:N:0:O:2	A:0:C:378:G:0:T:0:N:0:O:0	0,59,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	4783	A	C	A	16	ignore low frequency variant	Pass	False	False	True	142	173	38	20	0.02112676056338028	0.0	A:134:C:3:G:0:T:0:N:0:O:5	A:173:C:0:G:0:T:0:N:0:O:0	3,88,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5141	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	199	38	20	0.019417475728155338	0.0	A:98:C:0:G:0:T:2:N:0:O:3	A:199:C:0:G:0:T:0:N:0:O:0	1,42,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	199	38	20	0.02912621359223301	0.0	A:0:C:0:G:97:T:3:N:0:O:3	A:0:C:0:G:199:T:0:N:0:O:0	1,48,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	177	38	20	0.0380952380952381	0.0	A:4:C:0:G:100:T:0:N:0:O:1	A:0:C:0:G:177:T:0:N:0:O:0	2,65,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5672	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	195	38	20	0.022058823529411766	0.005128205128205128	A:0:C:133:G:0:T:3:N:0:O:0	A:0:C:194:G:0:T:1:N:0:O:0	2,78,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	195	38	20	0.07058823529411765	0.0	A:0:C:77:G:0:T:6:N:0:O:2	A:0:C:195:G:0:T:0:N:0:O:0	1,67,5,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	195	38	20	0.02702702702702703	0.0	A:1:C:2:G:0:T:71:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	0,61,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	192	38	20	0.0196078431372549	0.0	A:0:C:2:G:0:T:98:N:0:O:2	A:0:C:0:G:0:T:192:N:0:O:0	2,55,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	193	38	20	0.018691588785046728	0.0	A:0:C:86:G:0:T:2:N:0:O:19	A:0:C:193:G:0:T:0:N:0:O:0	0,81,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	193	38	20	0.11392405063291139	0.0	A:0:C:69:G:0:T:9:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,56,9,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	193	38	20	0.026785714285714284	0.0	A:0:C:3:G:0:T:98:N:0:O:11	A:0:C:0:G:0:T:193:N:0:O:0	0,37,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	193	38	20	0.02608695652173913	0.0	A:0:C:112:G:0:T:3:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	1,52,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	146	38	20	0.0392156862745098	0.02054794520547945	A:0:C:96:G:0:T:4:N:0:O:2	A:0:C:143:G:0:T:3:N:0:O:0	0,60,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	146	38	20	0.032	0.0	A:0:C:120:G:0:T:4:N:0:O:1	A:0:C:146:G:0:T:0:N:0:O:0	0,60,4,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	146	38	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:146:T:0:N:0:O:0	2,39,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	192	38	20	0.03125	0.0	A:93:C:0:G:3:T:0:N:0:O:0	A:192:C:0:G:0:T:0:N:0:O:0	3,41,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6616	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	192	38	20	0.024793388429752067	0.0	A:116:C:0:G:3:T:0:N:0:O:2	A:192:C:0:G:0:T:0:N:0:O:0	2,64,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	192	38	20	0.03	0.0	A:3:C:0:G:94:T:0:N:0:O:3	A:0:C:0:G:192:T:0:N:0:O:0	3,46,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	378	38	20	0.025	0.0	A:0:C:189:G:0:T:5:N:0:O:6	A:1:C:377:G:0:T:0:N:0:O:0	0,138,5,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	191	38	20	0.021052631578947368	0.0	A:2:C:0:G:92:T:1:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	2,27,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	6890	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	191	38	20	0.02	0.0	A:2:C:0:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,43,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	191	38	20	0.020202020202020204	0.0	A:0:C:96:G:0:T:2:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,58,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	191	38	20	0.02531645569620253	0.0	A:77:C:0:G:2:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	0,50,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	191	38	20	0.0410958904109589	0.0	A:68:C:0:G:0:T:3:N:0:O:2	A:191:C:0:G:0:T:0:N:0:O:0	0,54,3,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7178	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	131	38	20	0.022222222222222223	0.0	A:3:C:0:G:129:T:0:N:0:O:3	A:0:C:0:G:131:T:0:N:0:O:0	3,90,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	131	38	20	0.034482758620689655	0.0	A:78:C:0:G:3:T:0:N:0:O:6	A:131:C:0:G:0:T:0:N:0:O:0	3,44,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7287	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	131	38	20	0.037037037037037035	0.0	A:0:C:4:G:0:T:103:N:0:O:1	A:0:C:0:G:0:T:131:N:0:O:0	4,72,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7288	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	131	38	20	0.036036036036036036	0.0	A:0:C:4:G:0:T:106:N:0:O:1	A:0:C:0:G:0:T:131:N:0:O:0	4,80,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7289	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	131	38	20	0.02586206896551724	0.0	A:3:C:0:G:112:T:0:N:0:O:1	A:0:C:0:G:130:T:1:N:0:O:0	3,78,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	183	38	20	0.03571428571428571	0.0	A:3:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	3,33,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	194	38	20	0.03571428571428571	0.0	A:0:C:4:G:0:T:107:N:0:O:1	A:0:C:0:G:0:T:194:N:0:O:0	0,74,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	194	38	20	0.02631578947368421	0.0	A:111:C:0:G:3:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	3,47,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	192	38	20	0.03571428571428571	0.0	A:108:C:0:G:4:T:0:N:0:O:0	A:192:C:0:G:0:T:0:N:0:O:0	4,37,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	8255	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	192	38	20	0.028037383177570093	0.0	A:3:C:0:G:101:T:0:N:0:O:3	A:0:C:0:G:192:T:0:N:0:O:0	3,36,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	8379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	203	38	20	0.0379746835443038	0.0	A:76:C:0:G:3:T:0:N:0:O:0	A:203:C:0:G:0:T:0:N:0:O:0	3,26,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	8381	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	203	38	20	0.024691358024691357	0.0	A:78:C:0:G:2:T:0:N:0:O:1	A:203:C:0:G:0:T:0:N:0:O:0	1,26,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	8841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	184	38	20	0.0364963503649635	0.021739130434782608	A:0:C:127:G:0:T:5:N:0:O:5	A:0:C:180:G:0:T:4:N:0:O:0	3,87,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	184	38	20	0.09615384615384616	0.005434782608695652	A:5:C:1:G:45:T:0:N:0:O:1	A:1:C:0:G:183:T:0:N:0:O:0	5,10,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	180	38	20	0.049019607843137254	0.0	A:5:C:0:G:0:T:90:N:0:O:7	A:0:C:0:G:0:T:180:N:0:O:0	4,41,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	180	38	20	0.02564102564102564	0.0	A:3:C:0:G:114:T:0:N:0:O:0	A:0:C:0:G:180:T:0:N:0:O:0	3,50,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	175	38	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,53,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	9286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	175	38	20	0.025	0.0	A:0:C:116:G:0:T:3:N:0:O:1	A:0:C:175:G:0:T:0:N:0:O:0	1,49,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	175	38	20	0.03260869565217391	0.0	A:0:C:87:G:0:T:3:N:0:O:2	A:0:C:175:G:0:T:0:N:0:O:0	0,44,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	9479	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	175	38	20	0.038461538461538464	0.0	A:1:C:0:G:98:T:4:N:0:O:1	A:0:C:0:G:175:T:0:N:0:O:0	0,43,4,61	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	154	38	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:154:T:0:N:0:O:0	2,28,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	9920	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	154	38	20	0.02040816326530612	0.0	A:0:C:0:G:95:T:2:N:0:O:1	A:0:C:0:G:154:T:0:N:0:O:0	2,36,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	154	38	20	0.06779661016949153	0.0	A:4:C:0:G:55:T:0:N:0:O:0	A:0:C:0:G:154:T:0:N:0:O:0	4,15,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	154	38	20	0.06578947368421052	0.0	A:0:C:65:G:0:T:5:N:0:O:6	A:0:C:154:G:0:T:0:N:0:O:0	5,26,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	136	38	20	0.025	0.0	A:3:C:0:G:0:T:115:N:0:O:2	A:0:C:0:G:0:T:136:N:0:O:0	0,53,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	136	38	20	0.02830188679245283	0.0	A:3:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:136:T:0:N:0:O:0	3,25,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10319	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	136	38	20	0.02197802197802198	0.0	A:0:C:85:G:0:T:2:N:0:O:4	A:0:C:136:G:0:T:0:N:0:O:0	0,43,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	187	38	20	0.04040404040404041	0.0	A:0:C:95:G:0:T:4:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,53,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	187	38	20	0.041237113402061855	0.0	A:93:C:0:G:4:T:0:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	4,36,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	199	38	20	0.02040816326530612	0.0	A:2:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	0,63,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	199	38	20	0.022222222222222223	0.0	A:0:C:88:G:0:T:2:N:0:O:0	A:1:C:198:G:0:T:0:N:0:O:0	0,67,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	198	38	20	0.02654867256637168	0.0	A:0:C:0:G:3:T:108:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:0	0,59,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	11021	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	196	38	20	0.021052631578947368	0.0	A:92:C:0:G:0:T:2:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	1,46,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	11100	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	189	38	20	0.023809523809523808	0.0	A:1:C:2:G:0:T:81:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	2,69,0,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	11103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	190	38	20	0.01935483870967742	0.005263157894736842	A:0:C:126:G:0:T:3:N:0:O:26	A:0:C:189:G:0:T:1:N:0:O:0	2,105,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	11183	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	190	38	20	0.022988505747126436	0.0	A:0:C:0:G:2:T:85:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	2,53,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.09803921568627451	0.0	A:0:C:90:G:0:T:10:N:0:O:2	A:0:C:194:G:0:T:0:N:0:O:0	0,77,10,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	179	38	20	0.0425531914893617	0.0	A:44:C:0:G:2:T:0:N:0:O:1	A:179:C:0:G:0:T:0:N:0:O:0	1,28,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	11996	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	180	38	20	0.02040816326530612	0.005555555555555556	A:48:C:0:G:0:T:1:N:0:O:0	A:179:C:0:G:0:T:1:N:0:O:0	0,26,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	180	38	20	0.0410958904109589	0.0	A:0:C:69:G:0:T:3:N:0:O:1	A:1:C:179:G:0:T:0:N:0:O:0	2,34,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12236	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	166	38	20	0.02531645569620253	0.0	A:0:C:2:G:0:T:77:N:0:O:0	A:0:C:0:G:0:T:166:N:0:O:0	0,42,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	166	38	20	0.022222222222222223	0.0	A:88:C:0:G:2:T:0:N:0:O:0	A:166:C:0:G:0:T:0:N:0:O:0	2,47,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12264	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	166	38	20	0.0273972602739726	0.0	A:69:C:0:G:2:T:0:N:0:O:2	A:166:C:0:G:0:T:0:N:0:O:0	2,46,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	166	38	20	0.038461538461538464	0.0	A:3:C:0:G:61:T:0:N:0:O:14	A:0:C:0:G:165:T:1:N:0:O:0	0,65,3,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	185	342	38	20	0.021621621621621623	0.0	A:4:C:0:G:180:T:0:N:0:O:1	A:0:C:0:G:342:T:0:N:0:O:0	4,81,0,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	183	38	20	0.020833333333333332	0.0	A:92:C:0:G:2:T:0:N:0:O:2	A:183:C:0:G:0:T:0:N:0:O:0	2,49,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	183	38	20	0.03529411764705882	0.0	A:0:C:80:G:0:T:3:N:0:O:2	A:0:C:183:G:0:T:0:N:0:O:0	0,68,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	184	38	20	0.046296296296296294	0.0	A:98:C:0:G:5:T:0:N:0:O:5	A:184:C:0:G:0:T:0:N:0:O:0	5,32,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	184	38	20	0.019801980198019802	0.0	A:96:C:0:G:2:T:0:N:0:O:3	A:184:C:0:G:0:T:0:N:0:O:0	2,20,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	184	38	20	0.02830188679245283	0.0	A:0:C:103:G:0:T:3:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,51,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	199	38	20	0.02054794520547945	0.010050251256281407	A:0:C:143:G:0:T:3:N:0:O:0	A:0:C:197:G:0:T:2:N:0:O:0	1,60,2,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	152	199	38	20	0.02631578947368421	0.0	A:4:C:0:G:0:T:143:N:0:O:5	A:0:C:0:G:0:T:199:N:0:O:0	4,81,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13414	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	184	38	20	0.020833333333333332	0.0	A:0:C:0:G:2:T:93:N:0:O:1	A:0:C:0:G:0:T:184:N:0:O:0	0,63,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	182	38	20	0.09259259259259259	0.0	A:0:C:47:G:0:T:5:N:0:O:2	A:0:C:182:G:0:T:0:N:0:O:0	0,47,5,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	182	38	20	0.08247422680412371	0.0	A:8:C:0:G:84:T:0:N:0:O:5	A:0:C:0:G:182:T:0:N:0:O:0	8,29,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13583	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	184	38	20	0.017543859649122806	0.0	A:0:C:2:G:0:T:97:N:0:O:15	A:0:C:0:G:0:T:184:N:0:O:0	0,77,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	184	38	20	0.03773584905660377	0.0	A:1:C:50:G:0:T:2:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,30,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	157	38	20	0.03361344537815126	0.0	A:0:C:115:G:0:T:4:N:0:O:0	A:0:C:157:G:0:T:0:N:0:O:0	0,72,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	157	38	20	0.05063291139240506	0.0	A:4:C:0:G:75:T:0:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	4,23,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	157	38	20	0.024096385542168676	0.0	A:81:C:0:G:2:T:0:N:0:O:0	A:157:C:0:G:0:T:0:N:0:O:0	0,54,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	13990	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	176	38	20	0.019230769230769232	0.0	A:0:C:97:G:0:T:2:N:0:O:5	A:0:C:176:G:0:T:0:N:0:O:0	0,57,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	176	38	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:176:T:0:N:0:O:0	2,33,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	213	38	20	0.027972027972027972	0.0	A:0:C:119:G:0:T:4:N:0:O:20	A:0:C:213:G:0:T:0:N:0:O:0	0,69,4,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14289	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	213	38	20	0.024793388429752067	0.0	A:0:C:0:G:3:T:117:N:0:O:1	A:1:C:0:G:0:T:212:N:0:O:0	0,66,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	98	213	38	20	0.9795918367346939	1.0	A:0:C:1:G:0:T:96:N:0:O:1	A:0:C:0:G:0:T:213:N:0:O:0	47,49,49,49	404.16	1315.6	yes	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	213	38	20	0.038834951456310676	0.0	A:4:C:98:G:0:T:0:N:0:O:1	A:0:C:213:G:0:T:0:N:0:O:0	0,61,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	213	38	20	0.02857142857142857	0.0	A:0:C:101:G:0:T:3:N:0:O:1	A:0:C:213:G:0:T:0:N:0:O:0	0,59,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	193	38	20	0.024193548387096774	0.0	A:0:C:120:G:0:T:3:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,92,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	194	38	20	0.030612244897959183	0.0	A:3:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	3,56,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	194	38	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:193:T:1:N:0:O:0	2,48,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	194	38	20	0.02197802197802198	0.0	A:86:C:0:G:0:T:2:N:0:O:3	A:194:C:0:G:0:T:0:N:0:O:0	2,54,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	15273	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	185	38	20	0.022222222222222223	0.0	A:3:C:132:G:0:T:0:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,71,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	15355	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	185	38	20	0.023809523809523808	0.0	A:3:C:0:G:123:T:0:N:0:O:0	A:0:C:0:G:185:T:0:N:0:O:0	0,63,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	205	38	20	0.038461538461538464	0.0	A:1:C:0:G:99:T:4:N:0:O:0	A:0:C:0:G:205:T:0:N:0:O:0	0,62,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	15904	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	175	38	20	0.023809523809523808	0.0	A:3:C:121:G:0:T:0:N:0:O:2	A:0:C:175:G:0:T:0:N:0:O:0	0,47,3,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	15930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	175	38	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,45,3,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	175	38	20	0.07894736842105263	0.0	A:0:C:70:G:0:T:6:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,37,6,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	193	38	20	0.028037383177570093	0.0	A:0:C:0:G:3:T:96:N:0:O:8	A:0:C:0:G:0:T:193:N:0:O:0	2,43,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	196	38	20	0.052083333333333336	0.00510204081632653	A:1:C:0:G:90:T:5:N:0:O:0	A:0:C:0:G:195:T:1:N:0:O:0	0,35,5,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	196	38	20	0.027522935779816515	0.0	A:0:C:0:G:101:T:3:N:0:O:5	A:0:C:0:G:196:T:0:N:0:O:0	1,53,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	196	38	20	0.0297029702970297	0.0	A:0:C:98:G:0:T:3:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,71,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	196	38	20	0.06	0.0	A:6:C:0:G:89:T:0:N:0:O:5	A:0:C:0:G:196:T:0:N:0:O:0	6,34,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	196	38	20	0.028846153846153848	0.0	A:97:C:0:G:3:T:0:N:0:O:4	A:196:C:0:G:0:T:0:N:0:O:0	3,43,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	192	38	20	0.036585365853658534	0.010416666666666666	A:78:C:0:G:3:T:0:N:0:O:1	A:190:C:0:G:2:T:0:N:0:O:0	2,25,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	179	351	38	20	0.0223463687150838	0.0	A:175:C:0:G:4:T:0:N:0:O:0	A:351:C:0:G:0:T:0:N:0:O:0	4,58,0,121	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	183	38	20	0.029850746268656716	0.0	A:2:C:0:G:65:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	2,14,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	183	38	20	0.047619047619047616	0.0	A:76:C:0:G:4:T:0:N:0:O:4	A:183:C:0:G:0:T:0:N:0:O:0	4,23,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	183	38	20	0.03896103896103896	0.0	A:3:C:0:G:0:T:72:N:0:O:2	A:0:C:0:G:0:T:183:N:0:O:0	3,19,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	183	38	20	0.037037037037037035	0.0	A:1:C:72:G:0:T:3:N:0:O:5	A:0:C:183:G:0:T:0:N:0:O:0	2,34,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	166	38	20	0.022222222222222223	0.006024096385542169	A:2:C:0:G:87:T:0:N:0:O:1	A:1:C:0:G:165:T:0:N:0:O:0	2,33,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	166	38	20	0.0425531914893617	0.0	A:0:C:88:G:0:T:4:N:0:O:2	A:0:C:166:G:0:T:0:N:0:O:0	0,69,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	166	38	20	0.07627118644067797	0.0	A:9:C:0:G:109:T:0:N:0:O:0	A:0:C:0:G:166:T:0:N:0:O:0	9,50,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	166	38	20	0.021505376344086023	0.0	A:0:C:91:G:0:T:2:N:0:O:0	A:0:C:166:G:0:T:0:N:0:O:0	0,54,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17616	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	166	38	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:166:T:0:N:0:O:0	2,48,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	166	38	20	0.029411764705882353	0.0	A:0:C:99:G:0:T:3:N:0:O:0	A:0:C:166:G:0:T:0:N:0:O:0	0,59,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	166	38	20	0.03773584905660377	0.0	A:92:C:0:G:0:T:4:N:0:O:10	A:166:C:0:G:0:T:0:N:0:O:0	0,71,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	346	38	20	0.029850746268656716	0.0	A:0:C:192:G:0:T:6:N:0:O:3	A:0:C:346:G:0:T:0:N:0:O:0	0,128,6,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	187	38	20	0.028169014084507043	0.0	A:0:C:69:G:0:T:2:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,43,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	187	38	20	0.028037383177570093	0.0	A:3:C:0:G:104:T:0:N:0:O:0	A:0:C:0:G:187:T:0:N:0:O:0	0,61,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	187	38	20	0.025974025974025976	0.0	A:2:C:0:G:75:T:0:N:0:O:0	A:0:C:0:G:187:T:0:N:0:O:0	2,28,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	18099	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	161	38	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:89:N:0:O:1	A:0:C:0:G:0:T:161:N:0:O:0	0,52,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	194	38	20	0.05384615384615385	0.0	A:0:C:122:G:0:T:7:N:0:O:1	A:0:C:194:G:0:T:0:N:0:O:0	0,72,7,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	194	38	20	0.04477611940298507	0.0	A:0:C:127:G:0:T:6:N:0:O:1	A:0:C:194:G:0:T:0:N:0:O:0	0,77,6,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	175	38	20	0.07352941176470588	0.0	A:5:C:0:G:63:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	5,16,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	18735	A	T	A	1	near depth threshold	Alarm	False	False	True	44	175	38	20	0.022727272727272728	0.0	A:38:C:0:G:0:T:1:N:0:O:5	A:175:C:0:G:0:T:0:N:0:O:0	1,22,0,22	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	191	38	20	0.036231884057971016	0.0	A:5:C:0:G:130:T:0:N:0:O:3	A:0:C:0:G:191:T:0:N:0:O:0	5,28,0,110	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	197	38	20	0.1	0.0	A:0:C:71:G:0:T:8:N:0:O:1	A:0:C:197:G:0:T:0:N:0:O:0	0,65,8,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	19563	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	196	38	20	0.024691358024691357	0.0	A:2:C:0:G:78:T:1:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	2,28,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	19565	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	196	38	20	0.021739130434782608	0.0	A:0:C:0:G:90:T:2:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	2,39,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20024	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	197	38	20	0.022222222222222223	0.0	A:3:C:0:G:131:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	3,57,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	197	38	20	0.037037037037037035	0.0	A:103:C:0:G:4:T:0:N:0:O:1	A:197:C:0:G:0:T:0:N:0:O:0	3,40,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20069	G	T	G	16	ignore low frequency variant	Pass	False	False	True	146	197	38	20	0.02054794520547945	0.0	A:0:C:0:G:140:T:3:N:0:O:3	A:0:C:0:G:197:T:0:N:0:O:0	3,67,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	192	38	20	0.04854368932038835	0.0	A:0:C:0:G:5:T:98:N:0:O:0	A:0:C:0:G:0:T:192:N:0:O:0	5,71,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20263	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	192	38	20	0.018867924528301886	0.0	A:2:C:0:G:91:T:0:N:0:O:13	A:0:C:0:G:192:T:0:N:0:O:0	2,69,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	192	38	20	0.023622047244094488	0.0	A:3:C:0:G:120:T:0:N:0:O:4	A:0:C:0:G:191:T:0:N:0:O:1	3,98,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	192	38	20	0.03409090909090909	0.0	A:83:C:0:G:3:T:0:N:0:O:2	A:192:C:0:G:0:T:0:N:0:O:0	3,53,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	20410	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	192	38	20	0.023809523809523808	0.005208333333333333	A:0:C:0:G:123:T:3:N:0:O:0	A:0:C:0:G:191:T:1:N:0:O:0	3,89,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	167	186	38	20	0.023952095808383235	0.0	A:4:C:162:G:0:T:0:N:0:O:1	A:0:C:186:G:0:T:0:N:0:O:0	0,97,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	186	38	20	0.027522935779816515	0.0	A:3:C:0:G:105:T:0:N:0:O:1	A:0:C:0:G:186:T:0:N:0:O:0	3,38,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	186	38	20	0.04065040650406504	0.0	A:0:C:111:G:0:T:5:N:0:O:7	A:0:C:186:G:0:T:0:N:0:O:0	4,52,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	189	38	20	0.07	0.0	A:0:C:0:G:81:T:7:N:0:O:12	A:0:C:0:G:189:T:0:N:0:O:0	0,71,7,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	190	38	20	0.032	0.0	A:0:C:121:G:0:T:4:N:0:O:0	A:1:C:189:G:0:T:0:N:0:O:0	0,66,4,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	190	38	20	0.029411764705882353	0.0	A:0:C:2:G:0:T:46:N:0:O:20	A:0:C:0:G:0:T:190:N:0:O:0	0,41,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21386	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	190	38	20	0.021897810218978103	0.0	A:0:C:131:G:0:T:3:N:0:O:3	A:0:C:190:G:0:T:0:N:0:O:0	0,68,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21421	A	G	A	16	ignore low frequency variant	Pass	False	False	True	232	374	38	20	0.017241379310344827	0.0	A:190:C:0:G:4:T:0:N:0:O:38	A:373:C:0:G:0:T:0:N:0:O:1	4,123,0,109	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	183	38	20	0.04597701149425287	0.0	A:0:C:83:G:0:T:4:N:0:O:0	A:0:C:183:G:0:T:0:N:0:O:0	1,52,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	180	38	20	0.11688311688311688	0.0	A:0:C:67:G:0:T:9:N:0:O:1	A:0:C:180:G:0:T:0:N:0:O:0	6,20,3,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	180	38	20	0.03125	0.0	A:0:C:3:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:180:N:0:O:0	0,82,3,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21790	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	180	38	20	0.022556390977443608	0.0	A:0:C:3:G:0:T:114:N:0:O:16	A:0:C:0:G:0:T:180:N:0:O:0	0,95,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	21955	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	180	38	20	0.025	0.0	A:3:C:0:G:0:T:116:N:0:O:1	A:0:C:1:G:0:T:179:N:0:O:0	1,69,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	188	38	20	0.02027027027027027	0.0	A:3:C:0:G:145:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	3,93,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	151	188	38	20	0.046357615894039736	0.0	A:0:C:0:G:7:T:144:N:0:O:0	A:0:C:0:G:0:T:188:N:0:O:0	7,75,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	22663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	126	38	20	0.02054794520547945	0.0	A:0:C:141:G:0:T:3:N:0:O:2	A:1:C:125:G:0:T:0:N:0:O:0	3,16,0,130	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	184	38	20	0.020689655172413793	0.0	A:0:C:3:G:0:T:142:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	0,87,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	125	199	38	20	0.928	1.0	A:0:C:0:G:116:T:0:N:0:O:9	A:0:C:0:G:199:T:0:N:0:O:0	71,80,45,45	349.237	1468.3	yes	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	194	38	20	0.024390243902439025	0.0	A:3:C:0:G:114:T:0:N:0:O:6	A:0:C:0:G:193:T:0:N:0:O:1	3,57,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	194	38	20	0.020202020202020204	0.0	A:2:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:193:T:0:N:0:O:1	2,47,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23692	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	201	38	20	0.02459016393442623	0.0	A:0:C:118:G:0:T:3:N:0:O:1	A:0:C:201:G:0:T:0:N:0:O:0	1,68,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	201	38	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:113:N:0:O:2	A:0:C:0:G:0:T:201:N:0:O:0	0,70,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	172	38	20	0.14754098360655737	0.0	A:0:C:104:G:0:T:18:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	0,82,18,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	172	38	20	0.03424657534246575	0.0	A:141:C:0:G:0:T:5:N:0:O:0	A:172:C:0:G:0:T:0:N:0:O:0	5,84,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	172	38	20	0.06578947368421052	0.0	A:5:C:0:G:0:T:71:N:0:O:0	A:0:C:1:G:0:T:171:N:0:O:0	5,27,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	172	38	20	0.03333333333333333	0.0	A:3:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:172:T:0:N:0:O:0	3,19,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	172	38	20	0.021739130434782608	0.0	A:2:C:0:G:88:T:1:N:0:O:1	A:0:C:0:G:172:T:0:N:0:O:0	2,25,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	24095	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	172	38	20	0.11304347826086956	0.06395348837209303	A:0:C:0:G:102:T:13:N:0:O:0	A:0:C:0:G:161:T:11:N:0:O:0	11,66,2,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	181	38	20	0.09900990099009901	0.0	A:10:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	10,29,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	181	38	20	0.0425531914893617	0.0	A:4:C:0:G:85:T:0:N:0:O:5	A:0:C:0:G:181:T:0:N:0:O:0	4,22,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	193	38	20	0.0440251572327044	0.0	A:0:C:152:G:0:T:7:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,129,7,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	24966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	174	38	20	0.02631578947368421	0.0	A:111:C:0:G:3:T:0:N:0:O:0	A:174:C:0:G:0:T:0:N:0:O:0	3,85,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	24985	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	175	38	20	0.022988505747126436	0.0	A:2:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	2,55,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25061	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	172	38	20	0.024096385542168676	0.0	A:2:C:0:G:79:T:0:N:0:O:2	A:0:C:0:G:172:T:0:N:0:O:0	2,33,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25125	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	172	38	20	0.05660377358490566	0.0	A:100:C:0:G:6:T:0:N:0:O:0	A:172:C:0:G:0:T:0:N:0:O:0	6,58,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25297	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	172	38	20	0.14393939393939395	0.14534883720930233	A:19:C:0:G:113:T:0:N:0:O:0	A:25:C:0:G:146:T:1:N:0:O:0	12,86,7,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	189	38	20	0.02702702702702703	0.0	A:0:C:0:G:3:T:108:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	3,29,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	189	38	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:89:N:0:O:2	A:0:C:0:G:0:T:189:N:0:O:0	0,55,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	189	38	20	0.030303030303030304	0.0	A:96:C:0:G:0:T:3:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	3,43,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25509	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	189	38	20	0.025423728813559324	0.0	A:0:C:112:G:0:T:3:N:0:O:3	A:0:C:189:G:0:T:0:N:0:O:0	0,60,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	189	38	20	0.022988505747126436	0.0	A:0:C:0:G:2:T:84:N:0:O:1	A:0:C:0:G:0:T:189:N:0:O:0	2,23,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	107	189	38	20	1.0	1.0	A:0:C:0:G:0:T:107:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	35,35,72,72	420.0	1938.7	yes	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	196	38	20	0.02	0.00510204081632653	A:0:C:92:G:0:T:2:N:0:O:6	A:0:C:195:G:0:T:1:N:0:O:0	1,56,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	196	38	20	0.0641025641025641	0.0	A:73:C:5:G:0:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	1,40,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25809	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	196	38	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,53,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	196	38	20	0.03	0.0	A:0:C:97:G:0:T:3:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,62,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25863	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	196	38	20	0.02702702702702703	0.00510204081632653	A:0:C:3:G:0:T:108:N:0:O:0	A:0:C:1:G:0:T:195:N:0:O:0	0,66,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	196	38	20	0.037383177570093455	0.0	A:102:C:0:G:4:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	4,50,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	196	38	20	0.03225806451612903	0.0	A:83:C:0:G:3:T:0:N:0:O:7	A:196:C:0:G:0:T:0:N:0:O:0	3,30,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25885	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	196	38	20	0.021739130434782608	0.0	A:2:C:0:G:0:T:89:N:0:O:1	A:0:C:0:G:0:T:196:N:0:O:0	2,48,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	196	38	20	0.058823529411764705	0.0	A:0:C:79:G:0:T:5:N:0:O:1	A:0:C:196:G:0:T:0:N:0:O:0	5,50,0,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	73	196	38	20	0.0273972602739726	0.0	A:70:C:2:G:0:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	2,20,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	196	38	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:196:T:0:N:0:O:0	2,48,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	196	38	20	0.03333333333333333	0.0	A:3:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	3,35,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	197	38	20	0.023255813953488372	0.0	A:0:C:124:G:0:T:3:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	2,73,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	197	38	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:91:N:0:O:4	A:0:C:0:G:0:T:197:N:0:O:0	1,63,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	193	38	20	0.026785714285714284	0.0	A:0:C:80:G:0:T:3:N:0:O:29	A:0:C:191:G:0:T:0:N:0:O:2	0,60,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26309	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	191	38	20	0.029411764705882353	0.0	A:0:C:64:G:0:T:2:N:0:O:2	A:0:C:191:G:0:T:0:N:0:O:0	0,27,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	191	38	20	0.03389830508474576	0.0	A:0:C:2:G:0:T:56:N:0:O:1	A:0:C:0:G:0:T:191:N:0:O:0	0,23,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	191	38	20	0.02654867256637168	0.0	A:3:C:0:G:109:T:0:N:0:O:1	A:0:C:0:G:191:T:0:N:0:O:0	1,31,2,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26521	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	191	38	20	0.019801980198019802	0.0	A:2:C:97:G:0:T:0:N:0:O:2	A:0:C:191:G:0:T:0:N:0:O:0	0,38,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	191	38	20	0.07058823529411765	0.0	A:0:C:79:G:0:T:6:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,41,6,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	191	38	20	0.023809523809523808	0.0	A:3:C:0:G:119:T:0:N:0:O:4	A:0:C:0:G:191:T:0:N:0:O:0	3,26,0,100	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	364	38	20	0.08333333333333333	0.0	A:0:C:141:G:0:T:13:N:0:O:2	A:1:C:363:G:0:T:0:N:0:O:0	0,108,13,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	199	368	38	20	0.06532663316582915	0.0	A:0:C:13:G:0:T:185:N:0:O:1	A:0:C:0:G:0:T:368:N:0:O:0	0,111,13,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26600	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	189	38	20	0.022988505747126436	0.0	A:0:C:84:G:0:T:2:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	2,44,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	189	38	20	0.043478260869565216	0.005291005291005291	A:0:C:86:G:0:T:4:N:0:O:2	A:0:C:188:G:0:T:1:N:0:O:0	3,43,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	189	38	20	0.0449438202247191	0.0	A:0:C:4:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	1,33,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	189	38	20	0.06172839506172839	0.0	A:5:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:189:T:0:N:0:O:0	5,10,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	189	38	20	0.0425531914893617	0.0	A:0:C:89:G:0:T:4:N:0:O:1	A:1:C:188:G:0:T:0:N:0:O:0	0,62,4,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	181	38	20	0.020202020202020204	0.0	A:0:C:95:G:0:T:2:N:0:O:2	A:0:C:181:G:0:T:0:N:0:O:0	0,62,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26825	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	189	38	20	0.023622047244094488	0.0	A:123:C:0:G:3:T:0:N:0:O:1	A:189:C:0:G:0:T:0:N:0:O:0	3,58,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	156	38	20	0.02197802197802198	0.0	A:88:C:0:G:0:T:2:N:0:O:1	A:156:C:0:G:0:T:0:N:0:O:0	2,55,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	156	38	20	0.020618556701030927	0.0	A:81:C:0:G:2:T:0:N:0:O:14	A:156:C:0:G:0:T:0:N:0:O:0	2,44,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	157	38	20	0.025	0.0	A:77:C:0:G:2:T:0:N:0:O:1	A:157:C:0:G:0:T:0:N:0:O:0	2,27,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	157	38	20	0.029411764705882353	0.0	A:2:C:0:G:65:T:1:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	2,19,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27098	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	157	38	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:157:N:0:O:0	0,46,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	157	38	20	0.039473684210526314	0.0	A:0:C:73:G:0:T:3:N:0:O:0	A:0:C:157:G:0:T:0:N:0:O:0	0,64,3,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	176	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:96:N:0:O:1	A:1:C:0:G:0:T:175:N:0:O:0	1,43,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	176	38	20	0.022222222222222223	0.0	A:0:C:124:G:0:T:3:N:0:O:8	A:0:C:176:G:0:T:0:N:0:O:0	1,58,2,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27438	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	176	38	20	0.021505376344086023	0.0	A:2:C:0:G:0:T:89:N:0:O:2	A:0:C:0:G:0:T:176:N:0:O:0	0,36,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	186	38	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	2,40,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	168	38	20	0.05154639175257732	0.0	A:5:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:168:T:0:N:0:O:0	5,51,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	168	38	20	0.05102040816326531	0.0	A:93:C:0:G:5:T:0:N:0:O:0	A:168:C:0:G:0:T:0:N:0:O:0	5,51,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	148	38	20	0.02197802197802198	0.0	A:2:C:80:G:0:T:2:N:0:O:7	A:0:C:148:G:0:T:0:N:0:O:0	0,65,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28402	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	148	38	20	0.022727272727272728	0.0	A:86:C:0:G:2:T:0:N:0:O:0	A:148:C:0:G:0:T:0:N:0:O:0	2,57,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	71	148	38	20	0.028169014084507043	0.0	A:64:C:0:G:0:T:2:N:0:O:5	A:148:C:0:G:0:T:0:N:0:O:0	2,20,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	148	38	20	0.05357142857142857	0.0	A:0:C:49:G:0:T:3:N:0:O:4	A:1:C:147:G:0:T:0:N:0:O:0	1,27,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	192	38	20	0.022727272727272728	0.0	A:2:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:192:T:0:N:0:O:0	2,38,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	192	38	20	0.020689655172413793	0.0	A:0:C:136:G:0:T:3:N:0:O:6	A:0:C:192:G:0:T:0:N:0:O:0	1,103,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	189	38	20	0.030927835051546393	0.0	A:1:C:90:G:1:T:3:N:0:O:2	A:0:C:189:G:0:T:0:N:0:O:0	0,35,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28824	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	189	38	20	0.029411764705882353	0.0	A:0:C:64:G:0:T:2:N:0:O:2	A:0:C:189:G:0:T:0:N:0:O:0	0,36,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28881	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	189	38	20	0.02531645569620253	0.0	A:2:C:0:G:77:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	2,17,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	189	38	20	0.02857142857142857	0.0	A:3:C:0:G:100:T:0:N:0:O:2	A:0:C:0:G:189:T:0:N:0:O:0	3,12,0,93	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	189	38	20	0.028169014084507043	0.0	A:0:C:63:G:0:T:2:N:0:O:6	A:0:C:189:G:0:T:0:N:0:O:0	0,27,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	380	38	20	0.11382113821138211	0.002631578947368421	A:0:C:107:G:0:T:14:N:0:O:2	A:0:C:379:G:0:T:1:N:0:O:0	0,87,14,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	199	38	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	0,46,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29194	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	199	38	20	0.021505376344086023	0.0	A:0:C:0:G:2:T:91:N:0:O:0	A:1:C:0:G:0:T:198:N:0:O:0	1,27,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29195	G	C	G	16	ignore low frequency variant	Pass	False	False	True	102	199	38	20	0.0196078431372549	0.0	A:0:C:2:G:89:T:0:N:0:O:11	A:0:C:0:G:199:T:0:N:0:O:0	1,22,1,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29220	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	199	38	20	0.03076923076923077	0.005025125628140704	A:2:C:0:G:63:T:0:N:0:O:0	A:1:C:0:G:197:T:1:N:0:O:0	0,37,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	199	38	20	0.024390243902439025	0.0	A:3:C:120:G:0:T:0:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	3,49,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	198	38	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	1,26,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	199	38	20	0.019867549668874173	0.0	A:3:C:0:G:147:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	2,57,1,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	199	38	20	0.02586206896551724	0.0	A:3:C:0:G:98:T:0:N:0:O:15	A:0:C:0:G:198:T:1:N:0:O:0	3,24,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	29789	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	191	38	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,46,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00024	artic-pipeline	NB06	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00024	artic-pipeline	NB06	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	227	G	A	G	1	near depth threshold	Alarm	False	False	True	27	157	38	20	0.1111111111111111	0.0	A:3:C:0:G:20:T:0:N:0:O:4	A:0:C:0:G:157:T:0:N:0:O:0	3,11,0,16	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	59	152	38	20	0.8983050847457628	1.0	A:0:C:0:G:0:T:53:N:0:O:6	A:0:C:0:G:0:T:152:N:0:O:0	39,45,14,14	342.453	1268.7	yes	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	152	38	20	0.05	0.0	A:54:C:0:G:3:T:0:N:0:O:3	A:152:C:0:G:0:T:0:N:0:O:0	3,43,0,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	302	C	T	C	1	near depth threshold	Alarm	False	False	True	43	152	38	20	0.046511627906976744	0.039473684210526314	A:0:C:41:G:0:T:2:N:0:O:0	A:0:C:146:G:0:T:6:N:0:O:0	1,23,1,20	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	152	38	20	0.02127659574468085	0.0	A:1:C:0:G:0:T:36:N:0:O:10	A:0:C:0:G:0:T:152:N:0:O:0	1,27,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	307	C	T	C	1	near depth threshold	Alarm	False	False	True	34	152	38	20	0.058823529411764705	0.0	A:0:C:29:G:0:T:2:N:0:O:3	A:2:C:150:G:0:T:0:N:0:O:0	2,14,0,20	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	187	298	38	20	0.0213903743315508	0.010067114093959731	A:1:C:0:G:178:T:4:N:0:O:4	A:0:C:0:G:295:T:3:N:0:O:0	1,110,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	449	C	G	C	16	ignore low frequency variant	Pass	False	False	True	116	296	38	20	0.02586206896551724	0.0	A:0:C:112:G:3:T:0:N:0:O:1	A:0:C:296:G:0:T:0:N:0:O:0	0,60,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	301	38	20	0.03669724770642202	0.0	A:105:C:0:G:4:T:0:N:0:O:0	A:301:C:0:G:0:T:0:N:0:O:0	4,30,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	818	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	167	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:96:N:0:O:1	A:0:C:0:G:0:T:167:N:0:O:0	0,52,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	142	165	38	20	1.0	1.0	A:0:C:0:G:0:T:142:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	75,75,67,67	210.0	1371.9	yes	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	166	38	20	0.021897810218978103	0.018072289156626505	A:3:C:130:G:0:T:0:N:0:O:4	A:3:C:163:G:0:T:0:N:0:O:0	3,68,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	166	38	20	0.03296703296703297	0.0	A:0:C:80:G:0:T:3:N:0:O:8	A:0:C:166:G:0:T:0:N:0:O:0	1,40,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	157	168	38	20	0.01910828025477707	0.0	A:3:C:0:G:118:T:0:N:0:O:36	A:0:C:0:G:166:T:0:N:0:O:2	1,70,2,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	164	38	20	0.024096385542168676	0.0	A:81:C:0:G:2:T:0:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	0,38,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	166	38	20	0.023809523809523808	0.0	A:2:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:165:T:1:N:0:O:0	2,25,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	183	38	20	0.021739130434782608	0.0	A:3:C:0:G:132:T:0:N:0:O:3	A:0:C:0:G:181:T:2:N:0:O:0	3,34,0,104	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	1338	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	188	38	20	0.024793388429752067	0.0	A:3:C:0:G:117:T:0:N:0:O:1	A:0:C:0:G:187:T:1:N:0:O:0	3,29,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	309	38	20	0.02830188679245283	0.006472491909385114	A:0:C:102:G:0:T:3:N:0:O:1	A:4:C:303:G:0:T:2:N:0:O:0	0,46,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	309	38	20	0.022727272727272728	0.0	A:0:C:0:G:128:T:3:N:0:O:1	A:0:C:0:G:309:T:0:N:0:O:0	0,41,3,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	308	38	20	0.03418803418803419	0.006493506493506494	A:0:C:113:G:0:T:4:N:0:O:0	A:2:C:304:G:0:T:2:N:0:O:0	2,50,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	161	38	20	0.020618556701030927	0.0	A:0:C:94:G:0:T:2:N:0:O:1	A:3:C:158:G:0:T:0:N:0:O:0	0,23,2,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1629	A	C	N	2	allele in negative control	Alarm	False	False	False	79	161	38	20	0.02531645569620253	0.0	A:74:C:2:G:0:T:0:N:0:O:3	A:161:C:0:G:0:T:0:N:0:O:0	1,47,1,32	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1769	A	T	A	16	ignore low frequency variant	Pass	False	False	True	141	161	38	20	0.02127659574468085	0.006211180124223602	A:137:C:0:G:0:T:3:N:0:O:1	A:160:C:0:G:0:T:1:N:0:O:0	0,51,3,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	1917	C	T	T	17	accept high frequency variant	Pass	False	True	True	277	323	38	20	0.9855595667870036	1.0	A:0:C:2:G:0:T:273:N:0:O:2	A:0:C:0:G:0:T:323:N:0:O:0	97,99,176,178	70.0	1486.5	yes	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	184	38	20	0.05102040816326531	0.0	A:5:C:0:G:92:T:1:N:0:O:0	A:0:C:0:G:181:T:3:N:0:O:0	5,9,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	169	38	20	0.03225806451612903	0.0	A:3:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:166:T:3:N:0:O:0	3,42,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	2467	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	171	38	20	0.023255813953488372	0.011695906432748537	A:126:C:0:G:3:T:0:N:0:O:0	A:169:C:0:G:2:T:0:N:0:O:0	1,57,2,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	117	171	38	20	0.03418803418803419	0.0	A:113:C:4:G:0:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	4,42,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	225	38	20	0.034482758620689655	0.0	A:112:C:0:G:4:T:0:N:0:O:0	A:225:C:0:G:0:T:0:N:0:O:0	4,40,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	154	38	20	0.03896103896103896	0.0	A:74:C:3:G:0:T:0:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	0,34,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	154	38	20	0.024793388429752067	0.0	A:2:C:106:G:0:T:3:N:0:O:10	A:0:C:154:G:0:T:0:N:0:O:0	0,40,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	154	38	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:99:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	2,42,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	2928	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	154	38	20	0.024390243902439025	0.0	A:120:C:0:G:3:T:0:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	3,47,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	128	154	38	20	0.7890625	1.0	A:0:C:0:G:0:T:101:N:0:O:27	A:0:C:0:G:0:T:154:N:0:O:0	51,78,50,50	64.466	1445.3	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	154	38	20	0.045454545454545456	0.0	A:6:C:126:G:0:T:0:N:0:O:0	A:0:C:154:G:0:T:0:N:0:O:0	0,59,6,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	154	38	20	0.08256880733944955	0.0	A:0:C:9:G:0:T:100:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	0,60,9,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	154	38	20	0.03125	0.0	A:115:C:1:G:4:T:0:N:0:O:8	A:154:C:0:G:0:T:0:N:0:O:0	4,29,0,99	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	154	38	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	0,46,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	154	38	20	0.023809523809523808	0.0	A:0:C:82:G:0:T:2:N:0:O:0	A:0:C:154:G:0:T:0:N:0:O:0	0,39,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	154	38	20	0.02564102564102564	0.0	A:0:C:74:G:0:T:2:N:0:O:2	A:0:C:154:G:0:T:0:N:0:O:0	0,29,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	176	38	20	0.0625	0.0	A:0:C:89:G:0:T:6:N:0:O:1	A:0:C:176:G:0:T:0:N:0:O:0	0,61,6,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3580	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	176	38	20	0.02727272727272727	0.0	A:106:C:0:G:0:T:3:N:0:O:1	A:176:C:0:G:0:T:0:N:0:O:0	1,56,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3656	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	177	38	20	0.022727272727272728	0.0	A:0:C:83:G:0:T:2:N:0:O:3	A:1:C:176:G:0:T:0:N:0:O:0	0,66,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3745	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	177	38	20	0.021897810218978103	0.011299435028248588	A:0:C:3:G:0:T:131:N:0:O:3	A:0:C:2:G:0:T:175:N:0:O:0	2,67,1,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	177	38	20	0.02097902097902098	0.005649717514124294	A:0:C:139:G:0:T:3:N:0:O:1	A:3:C:173:G:0:T:1:N:0:O:0	1,73,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	3866	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	162	38	20	0.020134228187919462	0.006172839506172839	A:0:C:124:G:0:T:3:N:0:O:22	A:0:C:160:G:0:T:1:N:0:O:1	3,93,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	161	38	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:161:G:0:T:0:N:0:O:0	0,73,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	4006	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	161	38	20	0.022388059701492536	0.006211180124223602	A:0:C:0:G:131:T:3:N:0:O:0	A:0:C:0:G:160:T:1:N:0:O:0	2,76,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	175	38	20	0.03125	0.0	A:0:C:88:G:1:T:3:N:0:O:4	A:0:C:175:G:0:T:0:N:0:O:0	0,43,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4270	T	A	T	16	ignore low frequency variant	Pass	False	False	True	137	175	38	20	0.021897810218978103	0.005714285714285714	A:3:C:0:G:0:T:131:N:0:O:3	A:1:C:0:G:0:T:174:N:0:O:0	1,53,2,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	175	38	20	0.03389830508474576	0.0	A:0:C:53:G:0:T:2:N:0:O:4	A:0:C:175:G:0:T:0:N:0:O:0	0,40,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	116	175	38	20	0.017241379310344827	0.0	A:2:C:0:G:0:T:84:N:0:O:30	A:0:C:1:G:0:T:174:N:0:O:0	0,58,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	207	351	38	20	0.01932367149758454	0.002849002849002849	A:0:C:0:G:192:T:4:N:0:O:11	A:0:C:0:G:350:T:1:N:0:O:0	0,143,4,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4427	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	174	38	20	0.015151515151515152	0.0	A:1:C:0:G:2:T:129:N:0:O:0	A:0:C:0:G:0:T:174:N:0:O:0	1,76,1,56	11.118	.	no	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4687	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	147	38	20	0.022058823529411766	0.0	A:133:C:0:G:3:T:0:N:0:O:0	A:147:C:0:G:0:T:0:N:0:O:0	3,60,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	4963	G	C	G	16	ignore low frequency variant	Pass	False	False	True	163	147	38	20	0.04294478527607362	0.006802721088435374	A:0:C:7:G:156:T:0:N:0:O:0	A:0:C:1:G:144:T:2:N:0:O:0	6,103,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5057	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	184	38	20	0.023809523809523808	0.010869565217391304	A:0:C:3:G:0:T:121:N:0:O:2	A:0:C:2:G:0:T:182:N:0:O:0	1,79,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	184	38	20	0.039473684210526314	0.005434782608695652	A:72:C:0:G:0:T:3:N:0:O:1	A:183:C:0:G:0:T:1:N:0:O:0	3,22,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	184	38	20	0.023255813953488372	0.0	A:0:C:83:G:0:T:2:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	2,30,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	184	38	20	0.023809523809523808	0.010869565217391304	A:0:C:122:G:0:T:3:N:0:O:1	A:0:C:182:G:0:T:2:N:0:O:0	3,74,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	5258	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	184	38	20	0.032	0.005434782608695652	A:118:C:0:G:4:T:0:N:0:O:3	A:183:C:0:G:1:T:0:N:0:O:0	4,67,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	181	38	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:181:N:0:O:0	0,73,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	157	38	20	0.03205128205128205	0.0	A:146:C:0:G:5:T:0:N:0:O:5	A:157:C:0:G:0:T:0:N:0:O:0	5,87,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	157	38	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:157:T:0:N:0:O:0	2,46,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	151	38	20	0.021505376344086023	0.0	A:91:C:2:G:0:T:0:N:0:O:0	A:151:C:0:G:0:T:0:N:0:O:0	2,39,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5526	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	157	38	20	0.02158273381294964	0.0	A:0:C:135:G:0:T:3:N:0:O:1	A:0:C:157:G:0:T:0:N:0:O:0	0,81,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	251	38	20	0.02830188679245283	0.00398406374501992	A:0:C:101:G:0:T:3:N:0:O:2	A:0:C:250:G:0:T:1:N:0:O:0	1,74,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	251	38	20	0.02564102564102564	0.0	A:0:C:75:G:0:T:2:N:0:O:1	A:1:C:250:G:0:T:0:N:0:O:0	0,72,2,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	251	38	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:88:N:0:O:1	A:0:C:0:G:0:T:251:N:0:O:0	0,78,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5787	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	251	38	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:251:G:0:T:0:N:0:O:0	0,75,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	243	38	20	0.045454545454545456	0.0	A:0:C:5:G:0:T:105:N:0:O:0	A:0:C:0:G:0:T:243:N:0:O:0	5,79,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5852	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	242	38	20	0.042735042735042736	0.0	A:111:C:0:G:0:T:5:N:0:O:1	A:242:C:0:G:0:T:0:N:0:O:0	5,82,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	189	38	20	0.034482758620689655	0.015873015873015872	A:112:C:0:G:4:T:0:N:0:O:0	A:186:C:0:G:3:T:0:N:0:O:0	2,83,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	176	38	20	0.031746031746031744	0.0	A:4:C:0:G:119:T:0:N:0:O:3	A:0:C:0:G:176:T:0:N:0:O:0	4,46,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	176	38	20	0.023809523809523808	0.0	A:0:C:121:G:0:T:3:N:0:O:2	A:2:C:174:G:0:T:0:N:0:O:0	0,75,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6069	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	176	38	20	0.022222222222222223	0.011363636363636364	A:0:C:3:G:0:T:132:N:0:O:0	A:0:C:2:G:0:T:174:N:0:O:0	2,56,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	176	38	20	0.06818181818181818	0.0	A:0:C:81:G:0:T:6:N:0:O:1	A:0:C:176:G:0:T:0:N:0:O:0	0,67,6,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	176	38	20	0.031496062992125984	0.0	A:0:C:123:G:0:T:4:N:0:O:0	A:2:C:174:G:0:T:0:N:0:O:0	3,72,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	123	38	20	0.05434782608695652	0.008130081300813009	A:0:C:87:G:0:T:5:N:0:O:0	A:0:C:122:G:0:T:1:N:0:O:0	0,58,5,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	123	38	20	0.034782608695652174	0.008130081300813009	A:0:C:109:G:0:T:4:N:0:O:2	A:0:C:122:G:0:T:1:N:0:O:0	0,60,4,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6307	G	T	G	16	ignore low frequency variant	Pass	False	False	True	51	123	38	20	0.0196078431372549	0.008130081300813009	A:0:C:0:G:49:T:1:N:0:O:1	A:0:C:0:G:122:T:1:N:0:O:0	1,17,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6317	C	A	C	16	ignore low frequency variant	Pass	False	False	True	118	123	38	20	0.025423728813559324	0.0	A:3:C:115:G:0:T:0:N:0:O:0	A:0:C:123:G:0:T:0:N:0:O:0	0,65,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6330	C	A	C	16	ignore low frequency variant	Pass	False	False	True	142	123	38	20	0.02112676056338028	0.0	A:3:C:136:G:0:T:0:N:0:O:3	A:0:C:123:G:0:T:0:N:0:O:0	1,68,2,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	180	38	20	0.025423728813559324	0.0	A:0:C:101:G:0:T:3:N:0:O:14	A:2:C:178:G:0:T:0:N:0:O:0	2,44,1,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	180	38	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:180:N:0:O:0	0,50,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	180	38	20	0.02830188679245283	0.0	A:3:C:0:G:101:T:0:N:0:O:2	A:0:C:0:G:179:T:1:N:0:O:0	3,36,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	185	38	20	0.027522935779816515	0.0	A:3:C:0:G:105:T:0:N:0:O:1	A:0:C:0:G:183:T:2:N:0:O:0	2,25,1,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	185	38	20	0.02857142857142857	0.0	A:0:C:101:G:0:T:3:N:0:O:1	A:0:C:185:G:0:T:0:N:0:O:0	0,55,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	7029	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	185	38	20	0.042105263157894736	0.005405405405405406	A:0:C:91:G:0:T:4:N:0:O:0	A:1:C:183:G:0:T:1:N:0:O:0	0,51,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	7030	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	185	38	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:86:N:0:O:10	A:0:C:0:G:0:T:185:N:0:O:0	0,49,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	69	184	38	20	0.043478260869565216	0.0	A:66:C:0:G:0:T:3:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	0,47,3,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	7247	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	169	38	20	0.022727272727272728	0.011834319526627219	A:0:C:0:G:2:T:86:N:0:O:0	A:0:C:0:G:2:T:167:N:0:O:0	1,42,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	145	38	20	0.03529411764705882	0.0	A:3:C:0:G:81:T:0:N:0:O:1	A:0:C:0:G:144:T:1:N:0:O:0	3,25,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	7712	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	181	38	20	0.0196078431372549	0.011049723756906077	A:0:C:98:G:0:T:2:N:0:O:2	A:0:C:179:G:0:T:2:N:0:O:0	1,50,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	161	38	20	0.025210084033613446	0.0	A:0:C:108:G:0:T:3:N:0:O:8	A:0:C:161:G:0:T:0:N:0:O:0	2,59,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	161	38	20	0.022727272727272728	0.0	A:129:C:0:G:3:T:0:N:0:O:0	A:161:C:0:G:0:T:0:N:0:O:0	3,58,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8255	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	161	38	20	0.02830188679245283	0.0	A:3:C:0:G:101:T:0:N:0:O:2	A:0:C:0:G:161:T:0:N:0:O:0	3,39,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	219	38	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:219:C:0:G:0:T:0:N:0:O:0	2,34,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	219	38	20	0.03571428571428571	0.0	A:81:C:0:G:3:T:0:N:0:O:0	A:219:C:0:G:0:T:0:N:0:O:0	3,30,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	220	38	20	0.03571428571428571	0.0	A:4:C:0:G:106:T:0:N:0:O:2	A:0:C:0:G:220:T:0:N:0:O:0	4,35,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	201	38	20	0.034782608695652174	0.0	A:0:C:4:G:0:T:111:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	0,57,4,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8597	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	197	38	20	0.024193548387096774	0.01015228426395939	A:0:C:118:G:0:T:3:N:0:O:3	A:0:C:195:G:0:T:2:N:0:O:0	0,55,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	194	38	20	0.023076923076923078	0.005154639175257732	A:0:C:3:G:0:T:127:N:0:O:0	A:0:C:1:G:0:T:193:N:0:O:0	3,62,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8697	C	T	T	13	new position validated by illumina	Pass	False	True	True	135	251	38	20	1.0	1.0	A:0:C:0:G:0:T:135:N:0:O:0	A:0:C:0:G:0:T:251:N:0:O:0	69,69,66,66	70.0	1634.0	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8832	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	255	38	20	0.04032258064516129	0.011764705882352941	A:0:C:119:G:0:T:5:N:0:O:0	A:0:C:252:G:0:T:3:N:0:O:0	1,51,4,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	8887	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	217	38	20	0.0273972602739726	0.009216589861751152	A:69:C:0:G:0:T:2:N:0:O:2	A:215:C:0:G:0:T:2:N:0:O:0	1,11,1,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9015	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	132	38	20	0.02857142857142857	0.0	A:0:C:136:G:0:T:4:N:0:O:0	A:0:C:132:G:0:T:0:N:0:O:0	3,77,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	131	38	20	0.03571428571428571	0.0	A:4:C:0:G:0:T:99:N:0:O:9	A:0:C:0:G:0:T:131:N:0:O:0	4,51,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9034	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	132	38	20	0.020134228187919462	0.007575757575757576	A:146:C:0:G:3:T:0:N:0:O:0	A:131:C:0:G:1:T:0:N:0:O:0	3,70,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	9104	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	132	38	20	0.05042016806722689	0.030303030303030304	A:113:C:0:G:0:T:6:N:0:O:0	A:128:C:0:G:0:T:4:N:0:O:0	2,52,4,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	132	38	20	0.022556390977443608	0.0	A:3:C:0:G:130:T:0:N:0:O:0	A:0:C:0:G:131:T:1:N:0:O:0	3,56,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	132	38	20	0.025806451612903226	0.015151515151515152	A:0:C:149:G:0:T:4:N:0:O:2	A:0:C:130:G:0:T:2:N:0:O:0	1,73,3,82	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	9195	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	132	38	20	0.02040816326530612	0.007575757575757576	A:0:C:143:G:0:T:3:N:0:O:1	A:0:C:131:G:0:T:1:N:0:O:0	2,84,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	149	38	20	0.030612244897959183	0.0	A:95:C:0:G:3:T:0:N:0:O:0	A:149:C:0:G:0:T:0:N:0:O:0	3,27,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	149	38	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:149:G:0:T:0:N:0:O:0	0,52,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	149	38	20	0.023622047244094488	0.006711409395973154	A:0:C:0:G:124:T:3:N:0:O:0	A:0:C:0:G:148:T:1:N:0:O:0	0,51,3,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9856	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	185	38	20	0.02564102564102564	0.005405405405405406	A:3:C:0:G:113:T:0:N:0:O:1	A:1:C:0:G:183:T:1:N:0:O:0	1,66,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	299	38	20	0.04838709677419355	0.0	A:3:C:0:G:59:T:0:N:0:O:0	A:0:C:0:G:299:T:0:N:0:O:0	3,15,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	301	38	20	0.021052631578947368	0.0	A:0:C:84:G:0:T:2:N:0:O:9	A:0:C:299:G:0:T:0:N:0:O:2	2,32,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	10277	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	174	38	20	0.0273972602739726	0.005747126436781609	A:0:C:142:G:0:T:4:N:0:O:0	A:0:C:173:G:0:T:1:N:0:O:0	3,96,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	10351	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	174	38	20	0.022388059701492536	0.0	A:0:C:3:G:0:T:129:N:0:O:2	A:0:C:0:G:0:T:174:N:0:O:0	2,88,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	169	38	20	0.03669724770642202	0.0	A:0:C:104:G:0:T:4:N:0:O:1	A:0:C:169:G:0:T:0:N:0:O:0	0,51,4,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	10459	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	169	38	20	0.0234375	0.01775147928994083	A:0:C:3:G:0:T:125:N:0:O:0	A:0:C:3:G:0:T:166:N:0:O:0	0,47,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	10476	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	169	38	20	0.025210084033613446	0.0	A:0:C:3:G:0:T:114:N:0:O:2	A:0:C:0:G:0:T:169:N:0:O:0	0,47,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	10827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	188	38	20	0.022222222222222223	0.0	A:2:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:185:T:3:N:0:O:0	0,46,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	188	38	20	0.02247191011235955	0.0	A:0:C:87:G:0:T:2:N:0:O:0	A:4:C:184:G:0:T:0:N:0:O:0	0,52,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	190	38	20	0.026785714285714284	0.0	A:0:C:0:G:3:T:105:N:0:O:4	A:1:C:0:G:0:T:185:N:0:O:4	0,45,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11081	T	G	T	1	near depth threshold	Alarm	False	False	True	39	136	38	20	0.02564102564102564	0.0	A:0:C:0:G:1:T:38:N:0:O:0	A:0:C:0:G:0:T:136:N:0:O:0	1,12,0,27	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	143	38	20	0.03571428571428571	0.0	A:0:C:0:G:4:T:106:N:0:O:2	A:0:C:0:G:0:T:143:N:0:O:0	4,63,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	73	143	38	20	0.0410958904109589	0.0	A:0:C:0:G:70:T:3:N:0:O:0	A:0:C:0:G:143:T:0:N:0:O:0	3,28,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	122	38	20	0.025210084033613446	0.0	A:116:C:0:G:3:T:0:N:0:O:0	A:122:C:0:G:0:T:0:N:0:O:0	3,60,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11658	G	T	G	16	ignore low frequency variant	Pass	False	False	True	255	281	38	20	0.0196078431372549	0.0	A:0:C:0:G:236:T:5:N:0:O:14	A:0:C:0:G:281:T:0:N:0:O:0	4,168,1,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	171	38	20	0.05102040816326531	0.0	A:0:C:93:G:0:T:5:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,82,5,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11721	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	171	38	20	0.018518518518518517	0.0	A:98:C:0:G:2:T:0:N:0:O:8	A:171:C:0:G:0:T:0:N:0:O:0	2,77,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11732	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	171	38	20	0.02631578947368421	0.0	A:72:C:0:G:2:T:0:N:0:O:2	A:171:C:0:G:0:T:0:N:0:O:0	1,49,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11740	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	171	38	20	0.022988505747126436	0.0	A:85:C:2:G:0:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	2,69,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	171	38	20	0.038834951456310676	0.0	A:97:C:0:G:1:T:4:N:0:O:1	A:170:C:0:G:1:T:0:N:0:O:0	4,84,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11752	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	171	38	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:2:C:169:G:0:T:0:N:0:O:0	1,63,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	217	157	38	20	0.018433179723502304	0.01910828025477707	A:1:C:0:G:134:T:4:N:0:O:78	A:0:C:0:G:154:T:3:N:0:O:0	0,66,4,151	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	157	38	20	0.06060606060606061	0.0	A:62:C:0:G:4:T:0:N:0:O:0	A:157:C:0:G:0:T:0:N:0:O:0	0,39,4,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	12098	G	C	G	16	ignore low frequency variant	Pass	False	False	True	139	157	38	20	0.02158273381294964	0.0	A:0:C:3:G:134:T:0:N:0:O:2	A:0:C:0:G:157:T:0:N:0:O:0	3,54,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	155	38	20	0.04504504504504504	0.0	A:5:C:0:G:80:T:0:N:0:O:26	A:0:C:0:G:154:T:1:N:0:O:0	0,86,5,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12270	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	155	38	20	0.021505376344086023	0.0	A:90:C:0:G:2:T:0:N:0:O:1	A:155:C:0:G:0:T:0:N:0:O:0	2,48,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12361	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	155	38	20	0.031496062992125984	0.0	A:0:C:0:G:123:T:4:N:0:O:0	A:0:C:0:G:155:T:0:N:0:O:0	2,67,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12374	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	155	38	20	0.02040816326530612	0.0	A:0:C:93:G:0:T:2:N:0:O:3	A:0:C:155:G:0:T:0:N:0:O:0	0,51,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	155	38	20	0.040983606557377046	0.0	A:112:C:0:G:5:T:0:N:0:O:5	A:155:C:0:G:0:T:0:N:0:O:0	5,56,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	155	38	20	0.057692307692307696	0.0	A:6:C:0:G:94:T:0:N:0:O:4	A:0:C:0:G:154:T:1:N:0:O:0	6,36,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12452	C	A	C	16	ignore low frequency variant	Pass	False	False	True	191	264	38	20	0.020942408376963352	0.0	A:4:C:178:G:1:T:0:N:0:O:8	A:0:C:263:G:1:T:0:N:0:O:0	0,102,4,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	133	38	20	0.09195402298850575	0.0	A:0:C:78:G:0:T:8:N:0:O:1	A:0:C:133:G:0:T:0:N:0:O:0	0,47,8,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	136	38	20	0.0196078431372549	0.0	A:98:C:0:G:2:T:0:N:0:O:2	A:136:C:0:G:0:T:0:N:0:O:0	1,31,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	136	38	20	0.06060606060606061	0.007352941176470588	A:0:C:92:G:0:T:6:N:0:O:1	A:0:C:135:G:0:T:1:N:0:O:0	3,49,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13166	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	157	38	20	0.024193548387096774	0.006369426751592357	A:0:C:121:G:0:T:3:N:0:O:0	A:0:C:156:G:0:T:1:N:0:O:0	0,36,3,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	157	38	20	0.022058823529411766	0.0	A:0:C:128:G:0:T:3:N:0:O:5	A:2:C:155:G:0:T:0:N:0:O:0	0,82,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	158	38	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:99:N:0:O:8	A:0:C:0:G:0:T:158:N:0:O:0	1,46,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	274	38	20	0.05970149253731343	0.0	A:0:C:63:G:0:T:4:N:0:O:0	A:0:C:274:G:0:T:0:N:0:O:0	0,60,4,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13484	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	274	38	20	0.023529411764705882	0.0	A:2:C:0:G:82:T:1:N:0:O:0	A:0:C:0:G:274:T:0:N:0:O:0	2,63,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	274	38	20	0.037037037037037035	0.0	A:4:C:0:G:93:T:0:N:0:O:11	A:0:C:0:G:273:T:1:N:0:O:0	4,50,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13643	C	T	C	16	ignore low frequency variant	Pass	False	False	True	305	305	38	20	0.022950819672131147	0.0	A:0:C:287:G:0:T:7:N:0:O:11	A:5:C:300:G:0:T:0:N:0:O:0	0,179,7,126	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	138	38	20	0.03424657534246575	0.0	A:5:C:0:G:141:T:0:N:0:O:0	A:0:C:0:G:137:T:1:N:0:O:0	5,51,0,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	116	38	20	0.024793388429752067	0.0	A:117:C:0:G:3:T:0:N:0:O:1	A:116:C:0:G:0:T:0:N:0:O:0	3,64,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	203	38	20	0.03676470588235294	0.0	A:0:C:118:G:0:T:5:N:0:O:13	A:0:C:203:G:0:T:0:N:0:O:0	0,78,5,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	203	38	20	0.03571428571428571	0.0049261083743842365	A:0:C:107:G:0:T:4:N:0:O:1	A:0:C:202:G:0:T:1:N:0:O:0	0,80,4,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	100	203	38	20	0.99	1.0	A:0:C:0:G:0:T:99:N:0:O:1	A:0:C:0:G:0:T:203:N:0:O:0	49,50,50,50	196.015	1473.9	yes	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	203	38	20	0.0297029702970297	0.0	A:3:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:200:T:3:N:0:O:0	3,32,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14607	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	167	38	20	0.02857142857142857	0.0	A:101:C:0:G:3:T:0:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	3,67,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14608	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	168	38	20	0.02459016393442623	0.0	A:3:C:0:G:119:T:0:N:0:O:0	A:0:C:0:G:167:T:1:N:0:O:0	3,67,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14630	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	168	38	20	0.0234375	0.011904761904761904	A:0:C:123:G:0:T:3:N:0:O:2	A:4:C:162:G:0:T:2:N:0:O:0	2,82,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	140	38	20	0.02857142857142857	0.0	A:0:C:3:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:140:N:0:O:0	0,61,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	140	38	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:140:C:0:G:0:T:0:N:0:O:0	2,51,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	140	38	20	0.0234375	0.0	A:0:C:125:G:0:T:3:N:0:O:0	A:0:C:140:G:0:T:0:N:0:O:0	0,83,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14970	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	140	38	20	0.024	0.0	A:0:C:0:G:3:T:111:N:0:O:11	A:0:C:0:G:0:T:140:N:0:O:0	3,77,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	140	38	20	0.023809523809523808	0.0	A:82:C:0:G:0:T:2:N:0:O:0	A:139:C:0:G:1:T:0:N:0:O:0	2,30,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	171	38	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,63,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	15422	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	171	38	20	0.04040404040404041	0.0	A:93:C:4:G:1:T:0:N:0:O:1	A:171:C:0:G:0:T:0:N:0:O:0	4,55,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	15540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	185	38	20	0.03355704697986577	0.005405405405405406	A:0:C:140:G:0:T:5:N:0:O:4	A:0:C:184:G:0:T:1:N:0:O:0	5,89,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	180	38	20	0.04225352112676056	0.0	A:0:C:68:G:0:T:3:N:0:O:0	A:4:C:176:G:0:T:0:N:0:O:0	0,35,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	15955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	180	38	20	0.0273972602739726	0.0	A:2:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:180:T:0:N:0:O:0	1,57,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	185	38	20	0.03260869565217391	0.005405405405405406	A:1:C:87:G:0:T:3:N:0:O:1	A:0:C:184:G:0:T:1:N:0:O:0	0,60,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	185	38	20	0.03614457831325301	0.0	A:80:C:0:G:0:T:3:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	3,36,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	98	185	38	20	0.030612244897959183	0.0	A:0:C:94:G:3:T:0:N:0:O:1	A:0:C:185:G:0:T:0:N:0:O:0	3,33,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	189	38	20	0.022988505747126436	0.0	A:0:C:0:G:2:T:82:N:0:O:3	A:0:C:0:G:0:T:189:N:0:O:0	2,30,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	190	38	20	0.030612244897959183	0.005263157894736842	A:0:C:0:G:95:T:3:N:0:O:0	A:0:C:0:G:189:T:1:N:0:O:0	1,29,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	191	38	20	0.02727272727272727	0.0	A:0:C:0:G:104:T:3:N:0:O:3	A:0:C:0:G:191:T:0:N:0:O:0	3,44,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	193	38	20	0.05660377358490566	0.0	A:6:C:0:G:96:T:0:N:0:O:4	A:0:C:0:G:188:T:5:N:0:O:0	6,31,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16768	C	G	C	16	ignore low frequency variant	Pass	False	False	True	110	172	38	20	0.01818181818181818	0.0	A:1:C:97:G:2:T:0:N:0:O:10	A:3:C:169:G:0:T:0:N:0:O:0	0,68,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	164	38	20	0.06451612903225806	0.0	A:0:C:0:G:6:T:85:N:0:O:2	A:0:C:0:G:0:T:164:N:0:O:0	0,26,6,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16837	G	T	G	16	ignore low frequency variant	Pass	False	False	True	159	164	38	20	0.025157232704402517	0.006097560975609756	A:2:C:0:G:123:T:4:N:0:O:30	A:0:C:0:G:163:T:1:N:0:O:0	0,37,4,122	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	164	38	20	0.0594059405940594	0.0	A:95:C:0:G:6:T:0:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	0,14,6,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	103	38	20	0.022727272727272728	0.0	A:84:C:0:G:2:T:0:N:0:O:2	A:103:C:0:G:0:T:0:N:0:O:0	0,63,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	103	38	20	0.03296703296703297	0.0	A:0:C:84:G:1:T:3:N:0:O:3	A:0:C:103:G:0:T:0:N:0:O:0	0,76,3,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	103	38	20	0.03076923076923077	0.0	A:2:C:0:G:63:T:0:N:0:O:0	A:0:C:0:G:103:T:0:N:0:O:0	2,9,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	103	38	20	0.024390243902439025	0.0	A:2:C:1:G:0:T:78:N:0:O:1	A:0:C:0:G:0:T:103:N:0:O:0	2,23,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	103	38	20	0.037383177570093455	0.0	A:103:C:0:G:4:T:0:N:0:O:0	A:103:C:0:G:0:T:0:N:0:O:0	4,51,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17231	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	103	38	20	0.017857142857142856	0.0	A:2:C:0:G:95:T:0:N:0:O:15	A:0:C:0:G:103:T:0:N:0:O:0	2,51,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17244	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	103	38	20	0.039603960396039604	0.0	A:97:C:4:G:0:T:0:N:0:O:0	A:103:C:0:G:0:T:0:N:0:O:0	3,38,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17257	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	103	38	20	0.0234375	0.0	A:3:C:0:G:123:T:0:N:0:O:2	A:0:C:0:G:103:T:0:N:0:O:0	3,64,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	134	38	20	0.030927835051546393	0.0	A:3:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:134:T:0:N:0:O:0	3,34,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	134	38	20	0.0547945205479452	0.007462686567164179	A:0:C:67:G:0:T:4:N:0:O:2	A:0:C:133:G:0:T:1:N:0:O:0	1,45,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	17488	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	134	38	20	0.022556390977443608	0.007462686567164179	A:1:C:0:G:128:T:3:N:0:O:1	A:0:C:0:G:133:T:1:N:0:O:0	0,58,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	134	38	20	0.049586776859504134	0.0	A:6:C:0:G:115:T:0:N:0:O:0	A:0:C:0:G:134:T:0:N:0:O:0	6,44,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	134	38	20	0.020202020202020204	0.007462686567164179	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:1:G:0:T:133:N:0:O:0	0,58,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	302	38	20	0.030303030303030304	0.0	A:0:C:183:G:0:T:6:N:0:O:9	A:1:C:301:G:0:T:0:N:0:O:0	0,112,6,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	202	38	20	0.0410958904109589	0.0	A:0:C:69:G:0:T:3:N:0:O:1	A:0:C:202:G:0:T:0:N:0:O:0	0,44,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	202	38	20	0.026785714285714284	0.0	A:3:C:0:G:108:T:0:N:0:O:1	A:0:C:0:G:201:T:1:N:0:O:0	0,68,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17860	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	202	38	20	0.022727272727272728	0.0	A:3:C:0:G:129:T:0:N:0:O:0	A:0:C:0:G:199:T:3:N:0:O:0	2,69,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	198	38	20	0.020618556701030927	0.0	A:90:C:0:G:2:T:0:N:0:O:5	A:198:C:0:G:0:T:0:N:0:O:0	2,38,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	197	38	20	0.02531645569620253	0.0	A:2:C:0:G:77:T:0:N:0:O:0	A:0:C:0:G:195:T:2:N:0:O:0	2,26,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	252	305	38	20	0.023809523809523808	0.0	A:6:C:0:G:244:T:0:N:0:O:2	A:0:C:0:G:305:T:0:N:0:O:0	6,90,0,162	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	171	38	20	0.02054794520547945	0.0	A:0:C:141:G:0:T:3:N:0:O:2	A:0:C:171:G:0:T:0:N:0:O:0	0,76,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	18358	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	173	38	20	0.032520325203252036	0.0	A:0:C:4:G:0:T:118:N:0:O:1	A:0:C:0:G:0:T:173:N:0:O:0	4,60,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	18421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	174	38	20	0.020833333333333332	0.034482758620689655	A:0:C:141:G:0:T:3:N:0:O:0	A:0:C:168:G:0:T:6:N:0:O:0	1,64,2,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	174	38	20	0.02586206896551724	0.0	A:0:C:113:G:0:T:3:N:0:O:0	A:2:C:172:G:0:T:0:N:0:O:0	0,73,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	18486	C	T	C	16	ignore low frequency variant	Pass	False	False	True	151	174	38	20	0.026490066225165563	0.034482758620689655	A:0:C:146:G:0:T:4:N:0:O:1	A:1:C:167:G:0:T:6:N:0:O:0	2,76,2,75	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	18585	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	174	38	20	0.020833333333333332	0.034482758620689655	A:138:C:0:G:0:T:3:N:0:O:3	A:166:C:0:G:2:T:6:N:0:O:0	1,60,2,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	19041	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	140	38	20	0.0364963503649635	0.02857142857142857	A:1:C:131:G:0:T:5:N:0:O:0	A:1:C:135:G:0:T:4:N:0:O:0	3,43,2,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	140	38	20	0.03225806451612903	0.0	A:4:C:0:G:119:T:0:N:0:O:1	A:0:C:0:G:139:T:1:N:0:O:0	4,21,0,103	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	19193	G	T	G	16	ignore low frequency variant	Pass	False	False	True	146	140	38	20	0.02054794520547945	0.0	A:0:C:0:G:143:T:3:N:0:O:0	A:0:C:0:G:140:T:0:N:0:O:0	2,43,1,103	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	19477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	254	38	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:253:T:1:N:0:O:0	2,30,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	254	38	20	0.16883116883116883	0.0	A:0:C:63:G:0:T:13:N:0:O:1	A:2:C:252:G:0:T:0:N:0:O:0	0,55,13,22	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	19675	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	133	38	20	0.023076923076923078	0.0	A:3:C:124:G:0:T:0:N:0:O:3	A:0:C:133:G:0:T:0:N:0:O:0	0,51,3,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	133	38	20	0.02830188679245283	0.0	A:102:C:0:G:0:T:3:N:0:O:1	A:133:C:0:G:0:T:0:N:0:O:0	0,46,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	19760	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	133	38	20	0.022388059701492536	0.007518796992481203	A:3:C:131:G:0:T:0:N:0:O:0	A:1:C:132:G:0:T:0:N:0:O:0	0,56,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	181	38	20	0.056074766355140186	0.0	A:0:C:100:G:0:T:6:N:0:O:1	A:1:C:180:G:0:T:0:N:0:O:0	0,44,6,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	192	38	20	0.030612244897959183	0.0	A:92:C:0:G:3:T:0:N:0:O:3	A:192:C:0:G:0:T:0:N:0:O:0	3,47,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	172	38	20	0.037383177570093455	0.0	A:0:C:100:G:0:T:4:N:0:O:3	A:0:C:172:G:0:T:0:N:0:O:0	4,51,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	20923	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	191	38	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:90:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,42,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	187	38	20	0.11607142857142858	0.0	A:0:C:0:G:88:T:13:N:0:O:11	A:0:C:0:G:187:T:0:N:0:O:0	0,71,13,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21150	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	187	38	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	1,48,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	297	38	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:297:G:0:T:0:N:0:O:0	0,50,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21248	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	297	38	20	0.028037383177570093	0.003367003367003367	A:0:C:3:G:0:T:104:N:0:O:0	A:0:C:1:G:0:T:296:N:0:O:0	0,50,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	253	38	20	0.02040816326530612	0.0	A:1:C:0:G:0:T:31:N:0:O:17	A:0:C:0:G:0:T:253:N:0:O:0	0,31,1,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	336	38	20	0.032679738562091505	0.0	A:5:C:0:G:145:T:3:N:0:O:0	A:0:C:0:G:331:T:5:N:0:O:0	4,80,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	167	38	20	0.03225806451612903	0.0	A:89:C:0:G:3:T:0:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	3,32,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	167	38	20	0.057692307692307696	0.0	A:6:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:164:T:3:N:0:O:0	6,40,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21491	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	166	38	20	0.02459016393442623	0.006024096385542169	A:0:C:0:G:119:T:3:N:0:O:0	A:0:C:0:G:165:T:1:N:0:O:0	2,66,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	167	38	20	0.019801980198019802	0.0	A:98:C:2:G:0:T:0:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	2,61,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	159	38	20	0.12941176470588237	0.0	A:0:C:66:G:0:T:11:N:0:O:8	A:3:C:156:G:0:T:0:N:0:O:0	9,33,2,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21814	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	159	38	20	0.023076923076923078	0.0	A:127:C:0:G:3:T:0:N:0:O:0	A:159:C:0:G:0:T:0:N:0:O:0	3,67,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	149	159	38	20	0.013422818791946308	0.0	A:98:C:0:G:0:T:2:N:0:O:49	A:159:C:0:G:0:T:0:N:0:O:0	0,113,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	159	38	20	0.029411764705882353	0.0	A:99:C:0:G:3:T:0:N:0:O:0	A:159:C:0:G:0:T:0:N:0:O:0	3,42,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	200	38	20	0.03225806451612903	0.005	A:4:C:0:G:120:T:0:N:0:O:0	A:1:C:0:G:197:T:2:N:0:O:0	4,88,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	200	38	20	0.03773584905660377	0.0	A:0:C:0:G:4:T:102:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	4,50,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22326	C	T	C	1	near depth threshold	Alarm	False	False	True	30	33	38	20	0.03333333333333333	0.030303030303030304	A:0:C:27:G:0:T:1:N:0:O:2	A:0:C:32:G:0:T:1:N:0:O:0	0,20,1,10	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	22348	T	G	T	1	near depth threshold	Alarm	False	False	True	37	33	38	20	0.02702702702702703	0.0	A:0:C:0:G:1:T:36:N:0:O:0	A:0:C:0:G:0:T:33:N:0:O:0	0,20,1,17	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22350	C	T	C	1	near depth threshold	Alarm	False	False	True	31	34	38	20	0.03225806451612903	0.0	A:0:C:29:G:0:T:1:N:0:O:1	A:0:C:34:G:0:T:0:N:0:O:0	0,13,1,18	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22387	T	C	T	1	near depth threshold	Alarm	False	False	True	42	50	38	20	0.023809523809523808	0.0	A:0:C:1:G:0:T:41:N:0:O:0	A:0:C:0:G:0:T:50:N:0:O:0	0,19,1,23	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	50	38	20	0.02127659574468085	0.0	A:0:C:46:G:0:T:1:N:0:O:0	A:0:C:50:G:0:T:0:N:0:O:0	0,22,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22433	T	C	T	1	near depth threshold	Alarm	False	False	True	42	50	38	20	0.023809523809523808	0.0	A:0:C:1:G:0:T:41:N:0:O:0	A:0:C:0:G:0:T:50:N:0:O:0	0,22,1,20	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22446	C	T	C	1	near depth threshold	Alarm	False	False	True	29	50	38	20	0.034482758620689655	0.0	A:0:C:28:G:0:T:1:N:0:O:0	A:0:C:50:G:0:T:0:N:0:O:0	0,16,1,13	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22469	T	C	T	1	near depth threshold	Alarm	False	False	True	33	50	38	20	0.030303030303030304	0.0	A:0:C:1:G:0:T:32:N:0:O:0	A:0:C:0:G:0:T:50:N:0:O:0	0,17,1,16	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22499	T	C	T	1	near depth threshold	Alarm	False	False	True	39	50	38	20	0.05128205128205128	0.0	A:0:C:2:G:0:T:37:N:0:O:0	A:0:C:0:G:0:T:50:N:0:O:0	0,17,2,22	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22513	C	T	C	1	near depth threshold	Alarm	False	False	True	36	49	38	20	0.05555555555555555	0.0	A:0:C:34:G:0:T:2:N:0:O:0	A:0:C:49:G:0:T:0:N:0:O:0	1,13,1,23	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22521	T	G	T	1	near depth threshold	Alarm	False	False	True	35	49	38	20	0.02857142857142857	0.0	A:0:C:0:G:1:T:33:N:0:O:1	A:0:C:0:G:0:T:49:N:0:O:0	1,8,0,27	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22527	C	A	C	1	near depth threshold	Alarm	False	False	True	41	48	38	20	0.024390243902439025	0.020833333333333332	A:1:C:40:G:0:T:0:N:0:O:0	A:1:C:47:G:0:T:0:N:0:O:0	1,19,0,22	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	159	38	20	0.027522935779816515	0.0	A:3:C:0:G:105:T:1:N:0:O:0	A:0:C:0:G:159:T:0:N:0:O:0	3,30,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	159	38	20	0.027522935779816515	0.0	A:3:C:0:G:104:T:0:N:0:O:2	A:0:C:0:G:159:T:0:N:0:O:0	3,21,0,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	22988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	153	38	20	0.022388059701492536	0.006535947712418301	A:3:C:1:G:130:T:0:N:0:O:0	A:1:C:0:G:152:T:0:N:0:O:0	3,59,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	133	163	38	20	0.9699248120300752	1.0	A:0:C:0:G:129:T:0:N:0:O:4	A:0:C:0:G:163:T:0:N:0:O:0	63,67,66,66	70.0	1607.9	yes	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	198	38	20	0.03636363636363636	0.0	A:104:C:2:G:4:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	4,37,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	23679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	198	38	20	0.05319148936170213	0.0	A:0:C:88:G:0:T:5:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	2,38,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	23685	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	198	38	20	0.02586206896551724	0.0	A:0:C:108:G:0:T:3:N:0:O:5	A:2:C:196:G:0:T:0:N:0:O:0	0,61,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	179	38	20	0.08791208791208792	0.0	A:0:C:83:G:0:T:8:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	0,58,8,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	179	38	20	0.050505050505050504	0.0	A:0:C:5:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,59,5,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24026	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	179	38	20	0.021739130434782608	0.0	A:0:C:122:G:0:T:3:N:0:O:13	A:0:C:179:G:0:T:0:N:0:O:0	1,57,2,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	179	38	20	0.04081632653061224	0.0	A:4:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:178:T:1:N:0:O:0	4,16,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24243	T	A	T	16	ignore low frequency variant	Pass	False	False	True	70	144	38	20	0.02857142857142857	0.0	A:2:C:0:G:0:T:64:N:0:O:4	A:0:C:0:G:0:T:144:N:0:O:0	0,52,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	144	38	20	0.046875	0.0	A:59:C:0:G:3:T:0:N:0:O:2	A:144:C:0:G:0:T:0:N:0:O:0	0,47,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	144	38	20	0.0380952380952381	0.0	A:4:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:142:T:2:N:0:O:0	4,28,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	144	38	20	0.04	0.0	A:4:C:0:G:93:T:0:N:0:O:3	A:0:C:0:G:144:T:0:N:0:O:0	4,25,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24278	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	144	38	20	0.02040816326530612	0.0	A:1:C:1:G:2:T:93:N:0:O:1	A:0:C:0:G:0:T:144:N:0:O:0	2,23,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	144	38	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:106:N:0:O:1	A:0:C:0:G:0:T:144:N:0:O:0	3,33,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	182	38	20	0.046296296296296294	0.0	A:2:C:101:G:0:T:5:N:0:O:0	A:1:C:181:G:0:T:0:N:0:O:0	0,48,5,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	182	38	20	0.020134228187919462	0.0	A:0:C:3:G:0:T:146:N:0:O:0	A:0:C:0:G:0:T:182:N:0:O:0	0,82,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24509	C	T	C	16	ignore low frequency variant	Pass	False	False	True	164	182	38	20	0.024390243902439025	0.005494505494505495	A:0:C:159:G:0:T:4:N:0:O:1	A:0:C:181:G:0:T:1:N:0:O:0	2,77,2,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	182	38	20	0.031914893617021274	0.0	A:91:C:0:G:3:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	1,37,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	182	38	20	0.022388059701492536	0.0	A:0:C:128:G:0:T:3:N:0:O:3	A:1:C:181:G:0:T:0:N:0:O:0	0,76,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	182	38	20	0.07207207207207207	0.005494505494505495	A:0:C:102:G:0:T:8:N:0:O:1	A:0:C:181:G:0:T:1:N:0:O:0	2,80,6,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24868	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	114	38	20	0.023809523809523808	0.0	A:3:C:0:G:107:T:0:N:0:O:16	A:0:C:0:G:114:T:0:N:0:O:0	3,77,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24904	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	114	38	20	0.027777777777777776	0.008771929824561403	A:0:C:138:G:0:T:4:N:0:O:2	A:3:C:110:G:0:T:1:N:0:O:0	1,94,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	114	38	20	0.03614457831325301	0.0	A:3:C:0:G:79:T:0:N:0:O:1	A:0:C:0:G:114:T:0:N:0:O:0	0,53,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	114	38	20	0.02654867256637168	0.0	A:110:C:0:G:3:T:0:N:0:O:0	A:114:C:0:G:0:T:0:N:0:O:0	3,65,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	78	114	38	20	0.038461538461538464	0.0	A:0:C:3:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:114:N:0:O:0	3,45,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	25060	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	151	38	20	0.03225806451612903	0.0	A:87:C:0:G:0:T:3:N:0:O:3	A:151:C:0:G:0:T:0:N:0:O:0	0,35,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25125	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	151	38	20	0.024390243902439025	0.0	A:119:C:0:G:3:T:0:N:0:O:1	A:151:C:0:G:0:T:0:N:0:O:0	3,63,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25460	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	170	38	20	0.024390243902439025	0.0	A:0:C:118:G:0:T:3:N:0:O:2	A:0:C:170:G:0:T:0:N:0:O:0	1,49,2,74	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	25499	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	170	38	20	0.02654867256637168	0.0	A:0:C:106:G:0:T:3:N:0:O:4	A:2:C:168:G:0:T:0:N:0:O:0	0,60,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	170	38	20	0.04424778761061947	0.0	A:0:C:98:G:0:T:5:N:0:O:10	A:2:C:168:G:0:T:0:N:0:O:0	2,44,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	124	170	38	20	0.9919354838709677	1.0	A:1:C:0:G:0:T:123:N:0:O:0	A:0:C:0:G:0:T:170:N:0:O:0	44,44,79,80	350.0	2043.6	yes	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	25602	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	170	38	20	0.021505376344086023	0.0	A:90:C:0:G:2:T:0:N:0:O:1	A:170:C:0:G:0:T:0:N:0:O:0	2,29,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	170	38	20	0.030303030303030304	0.0058823529411764705	A:4:C:117:G:0:T:0:N:0:O:11	A:1:C:169:G:0:T:0:N:0:O:0	4,63,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	188	38	20	0.03571428571428571	0.0	A:0:C:97:G:0:T:4:N:0:O:11	A:2:C:186:G:0:T:0:N:0:O:0	2,62,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	188	38	20	0.020134228187919462	0.005319148936170213	A:0:C:137:G:0:T:3:N:0:O:9	A:0:C:187:G:0:T:1:N:0:O:0	1,86,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	25720	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	188	38	20	0.023255813953488372	0.015957446808510637	A:0:C:0:G:125:T:3:N:0:O:1	A:0:C:0:G:185:T:3:N:0:O:0	3,70,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	188	38	20	0.020202020202020204	0.010638297872340425	A:0:C:91:G:0:T:2:N:0:O:6	A:1:C:185:G:0:T:2:N:0:O:0	2,81,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	188	38	20	0.02197802197802198	0.0	A:2:C:0:G:88:T:0:N:0:O:1	A:0:C:0:G:188:T:0:N:0:O:0	2,31,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	190	38	20	0.015267175572519083	0.005263157894736842	A:2:C:95:G:0:T:0:N:0:O:34	A:1:C:187:G:0:T:0:N:0:O:2	1,64,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	188	38	20	0.02666666666666667	0.0	A:71:C:2:G:0:T:0:N:0:O:2	A:188:C:0:G:0:T:0:N:0:O:0	0,35,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	188	38	20	0.030612244897959183	0.0	A:0:C:95:G:0:T:3:N:0:O:0	A:0:C:188:G:0:T:0:N:0:O:0	0,68,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	188	38	20	0.026785714285714284	0.0	A:106:C:0:G:3:T:0:N:0:O:3	A:188:C:0:G:0:T:0:N:0:O:0	3,53,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	188	38	20	0.05405405405405406	0.0	A:101:C:0:G:6:T:0:N:0:O:4	A:188:C:0:G:0:T:0:N:0:O:0	6,50,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	188	38	20	0.021052631578947368	0.0	A:90:C:0:G:2:T:0:N:0:O:3	A:188:C:0:G:0:T:0:N:0:O:0	2,34,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	79	188	38	20	0.0379746835443038	0.0	A:76:C:3:G:0:T:0:N:0:O:0	A:188:C:0:G:0:T:0:N:0:O:0	3,22,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	188	38	20	0.04395604395604396	0.0	A:4:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	4,35,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	219	336	38	20	0.0228310502283105	0.0	A:214:C:0:G:5:T:0:N:0:O:0	A:336:C:0:G:0:T:0:N:0:O:0	0,156,5,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26004	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	176	38	20	0.023622047244094488	0.0	A:0:C:123:G:0:T:3:N:0:O:1	A:0:C:176:G:0:T:0:N:0:O:0	2,64,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	179	38	20	0.02054794520547945	0.0	A:0:C:143:G:0:T:3:N:0:O:0	A:1:C:178:G:0:T:0:N:0:O:0	3,70,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26413	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	183	38	20	0.02702702702702703	0.0	A:2:C:0:G:0:T:72:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,50,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	183	38	20	0.02	0.0	A:2:C:0:G:96:T:1:N:0:O:1	A:0:C:0:G:182:T:1:N:0:O:0	2,58,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	236	337	38	20	0.025423728813559324	0.0	A:0:C:229:G:0:T:6:N:0:O:1	A:1:C:335:G:0:T:0:N:0:O:1	0,211,6,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	164	38	20	0.043795620437956206	0.0	A:128:C:0:G:6:T:0:N:0:O:3	A:164:C:0:G:0:T:0:N:0:O:0	6,92,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	166	38	20	0.024390243902439025	0.0	A:79:C:0:G:0:T:2:N:0:O:1	A:165:C:0:G:0:T:0:N:0:O:1	2,28,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	166	38	20	0.13513513513513514	0.0	A:10:C:0:G:64:T:0:N:0:O:0	A:0:C:0:G:165:T:1:N:0:O:0	10,21,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	173	38	20	0.023809523809523808	0.0	A:3:C:0:G:123:T:0:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	3,52,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	173	38	20	0.02857142857142857	0.0	A:100:C:0:G:3:T:0:N:0:O:2	A:173:C:0:G:0:T:0:N:0:O:0	3,36,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	173	38	20	0.05319148936170213	0.0	A:5:C:0:G:87:T:0:N:0:O:2	A:0:C:0:G:173:T:0:N:0:O:0	5,26,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	173	38	20	0.06172839506172839	0.0	A:0:C:76:G:0:T:5:N:0:O:0	A:0:C:173:G:0:T:0:N:0:O:0	0,65,5,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	173	38	20	0.03296703296703297	0.0	A:0:C:85:G:1:T:3:N:0:O:2	A:1:C:172:G:0:T:0:N:0:O:0	0,63,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27154	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	173	38	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:1:C:172:G:0:T:0:N:0:O:0	2,28,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27360	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	138	38	20	0.020689655172413793	0.021739130434782608	A:0:C:3:G:0:T:140:N:0:O:2	A:0:C:3:G:0:T:135:N:0:O:0	2,62,1,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27434	C	T	T	17	accept high frequency variant	Pass	False	True	True	123	138	38	20	0.967479674796748	0.9130434782608695	A:0:C:3:G:0:T:119:N:0:O:1	A:0:C:9:G:0:T:126:N:0:O:3	56,59,63,64	209.237	1280.7	yes	.	.	.	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	138	38	20	0.02631578947368421	0.0	A:3:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:138:T:0:N:0:O:0	3,32,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	190	38	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	2,39,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	27759	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	190	38	20	0.02097902097902098	0.0	A:140:C:0:G:3:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	3,72,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	103	38	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:103:T:0:N:0:O:0	2,39,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28172	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	119	38	20	0.02608695652173913	0.008403361344537815	A:3:C:1:G:0:T:109:N:0:O:2	A:1:C:0:G:0:T:118:N:0:O:0	2,68,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	119	38	20	0.027777777777777776	0.0	A:0:C:70:G:0:T:2:N:0:O:0	A:4:C:115:G:0:T:0:N:0:O:0	0,54,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	159	38	20	0.031914893617021274	0.0	A:3:C:0:G:90:T:1:N:0:O:0	A:0:C:0:G:157:T:2:N:0:O:0	3,25,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	164	161	38	20	0.024390243902439025	0.0	A:1:C:0:G:4:T:122:N:0:O:37	A:0:C:0:G:0:T:159:N:0:O:2	0,63,4,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	159	38	20	0.07446808510638298	0.0	A:7:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:158:T:1:N:0:O:0	0,61,7,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	159	38	20	0.022988505747126436	0.0	A:0:C:83:G:0:T:2:N:0:O:2	A:0:C:159:G:0:T:0:N:0:O:0	0,43,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	159	38	20	0.02608695652173913	0.0	A:0:C:112:G:0:T:3:N:0:O:0	A:0:C:159:G:0:T:0:N:0:O:0	0,51,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28759	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	177	38	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,25,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	287	38	20	0.07352941176470588	0.0	A:0:C:63:G:0:T:5:N:0:O:0	A:0:C:287:G:0:T:0:N:0:O:0	0,20,5,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28863	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	288	38	20	0.021505376344086023	0.0	A:0:C:65:G:1:T:2:N:0:O:25	A:2:C:286:G:0:T:0:N:0:O:0	0,52,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00025	artic-pipeline	NB07	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	287	38	20	0.022988505747126436	0.0	A:0:C:74:G:0:T:2:N:0:O:11	A:1:C:286:G:0:T:0:N:0:O:0	0,22,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	287	38	20	0.025	0.0	A:0:C:2:G:0:T:78:N:0:O:0	A:0:C:0:G:0:T:287:N:0:O:0	0,21,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	287	38	20	0.02857142857142857	0.0	A:0:C:102:G:0:T:3:N:0:O:0	A:0:C:287:G:0:T:0:N:0:O:0	0,24,3,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	128	324	38	20	0.0546875	0.0	A:0:C:117:G:0:T:7:N:0:O:4	A:1:C:323:G:0:T:0:N:0:O:0	0,118,7,10	.	101.1	no	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	184	327	38	20	0.021739130434782608	0.0	A:0:C:4:G:0:T:177:N:0:O:3	A:0:C:0:G:0:T:327:N:0:O:0	0,104,4,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	178	38	20	0.02	0.0	A:1:C:0:G:48:T:0:N:0:O:1	A:0:C:0:G:178:T:0:N:0:O:0	1,3,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29111	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	181	38	20	0.024	0.0	A:3:C:0:G:119:T:0:N:0:O:3	A:0:C:0:G:177:T:1:N:0:O:3	3,70,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	101	178	38	20	0.0297029702970297	0.0	A:1:C:3:G:97:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	2,58,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	248	207	38	20	0.03225806451612903	0.0	A:239:C:0:G:8:T:0:N:0:O:1	A:207:C:0:G:0:T:0:N:0:O:0	8,100,0,148	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	97	194	38	20	0.020618556701030927	0.0	A:0:C:2:G:86:T:0:N:0:O:9	A:0:C:0:G:193:T:0:N:0:O:1	2,33,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	89	190	38	20	0.033707865168539325	0.0	A:0:C:86:G:3:T:0:N:0:O:0	A:0:C:190:G:0:T:0:N:0:O:0	3,24,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00025	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	110	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	200	38	20	0.018867924528301886	0.0	A:0:C:48:G:0:T:1:N:0:O:4	A:0:C:200:G:0:T:0:N:0:O:0	0,19,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	62	200	38	20	0.967741935483871	1.0	A:0:C:0:G:0:T:60:N:0:O:2	A:0:C:0:G:0:T:200:N:0:O:0	31,33,29,29	69.237	1470.5	yes	.	.	.	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	306	T	A	T	1	near depth threshold	Alarm	False	False	True	44	200	38	20	0.045454545454545456	0.0	A:2:C:0:G:0:T:40:N:0:O:2	A:0:C:0:G:0:T:200:N:0:O:0	2,12,0,32	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	307	C	T	C	1	near depth threshold	Alarm	False	False	True	39	200	38	20	0.02564102564102564	0.0	A:0:C:38:G:0:T:1:N:0:O:0	A:1:C:199:G:0:T:0:N:0:O:0	1,7,0,32	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	393	38	20	0.022058823529411766	0.0	A:131:C:0:G:3:T:0:N:0:O:2	A:393:C:0:G:0:T:0:N:0:O:0	3,25,0,111	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	380	38	20	0.022388059701492536	0.005263157894736842	A:3:C:126:G:0:T:0:N:0:O:5	A:2:C:378:G:0:T:0:N:0:O:0	3,84,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	381	38	20	0.05263157894736842	0.0	A:0:C:81:G:0:T:5:N:0:O:9	A:0:C:381:G:0:T:0:N:0:O:0	0,54,5,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	381	38	20	0.02158273381294964	0.0	A:3:C:0:G:104:T:0:N:0:O:32	A:0:C:0:G:381:T:0:N:0:O:0	3,84,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	381	38	20	0.036585365853658534	0.0026246719160104987	A:78:C:0:G:3:T:0:N:0:O:1	A:380:C:0:G:1:T:0:N:0:O:0	3,49,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	381	38	20	0.04	0.0	A:2:C:0:G:46:T:0:N:0:O:2	A:0:C:0:G:381:T:0:N:0:O:0	2,8,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	381	38	20	0.02040816326530612	0.0	A:2:C:0:G:88:T:0:N:0:O:8	A:0:C:0:G:379:T:2:N:0:O:0	2,50,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	380	38	20	0.03260869565217391	0.0	A:0:C:3:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:380:N:0:O:0	0,69,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	201	330	38	20	0.024875621890547265	0.0	A:5:C:0:G:196:T:0:N:0:O:0	A:0:C:0:G:330:T:0:N:0:O:0	4,80,1,121	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1349	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	141	38	20	0.022556390977443608	0.0	A:3:C:120:G:0:T:0:N:0:O:10	A:0:C:140:G:0:T:0:N:0:O:1	1,56,2,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	334	38	20	0.024	0.0	A:0:C:120:G:0:T:3:N:0:O:2	A:0:C:334:G:0:T:0:N:0:O:0	0,59,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	202	38	20	0.03333333333333333	0.0	A:54:C:0:G:2:T:0:N:0:O:4	A:202:C:0:G:0:T:0:N:0:O:0	0,26,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	202	38	20	0.025	0.0	A:2:C:0:G:73:T:0:N:0:O:5	A:0:C:0:G:202:T:0:N:0:O:0	1,12,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	380	38	20	0.0297029702970297	0.0	A:0:C:3:G:0:T:96:N:0:O:2	A:0:C:0:G:0:T:380:N:0:O:0	0,54,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	198	38	20	0.02027027027027027	0.0	A:3:C:0:G:133:T:0:N:0:O:12	A:0:C:0:G:198:T:0:N:0:O:0	3,36,0,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	198	38	20	0.056910569105691054	0.0	A:7:C:0:G:114:T:0:N:0:O:2	A:0:C:0:G:198:T:0:N:0:O:0	7,25,0,98	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	117	369	38	20	0.9914529914529915	0.997289972899729	A:0:C:0:G:0:T:116:N:0:O:1	A:0:C:0:G:0:T:368:N:0:O:1	39,40,77,77	280.0	1198.3	yes	.	.	.	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	439	38	20	0.03546099290780142	0.0	A:136:C:0:G:5:T:0:N:0:O:0	A:439:C:0:G:0:T:0:N:0:O:0	5,51,0,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	259	38	20	0.038461538461538464	0.0	A:7:C:0:G:170:T:0:N:0:O:5	A:0:C:0:G:259:T:0:N:0:O:0	6,94,1,88	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	158	259	38	20	0.02531645569620253	0.0	A:152:C:0:G:4:T:0:N:0:O:2	A:259:C:0:G:0:T:0:N:0:O:0	4,78,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	73	206	38	20	0.0547945205479452	0.0	A:69:C:4:G:0:T:0:N:0:O:0	A:206:C:0:G:0:T:0:N:0:O:0	0,21,4,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	225	38	20	0.03225806451612903	0.0	A:0:C:113:G:1:T:4:N:0:O:6	A:0:C:224:G:0:T:0:N:0:O:1	0,32,4,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	115	349	38	20	0.7565217391304347	0.997134670487106	A:1:C:0:G:0:T:87:N:0:O:27	A:0:C:0:G:0:T:348:N:0:O:1	34,61,53,54	466.505	1414.9	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	202	38	20	0.030303030303030304	0.0	A:4:C:128:G:0:T:0:N:0:O:0	A:0:C:202:G:0:T:0:N:0:O:0	0,42,4,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	200	38	20	0.05825242718446602	0.0	A:0:C:6:G:0:T:96:N:0:O:1	A:0:C:0:G:0:T:200:N:0:O:0	0,41,6,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	101	200	38	20	0.04950495049504951	0.0	A:0:C:0:G:83:T:5:N:0:O:13	A:0:C:0:G:200:T:0:N:0:O:0	0,51,5,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	311	38	20	0.03614457831325301	0.0	A:0:C:3:G:0:T:80:N:0:O:0	A:1:C:0:G:0:T:310:N:0:O:0	0,38,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	311	38	20	0.04081632653061224	0.0	A:93:C:0:G:4:T:1:N:0:O:0	A:311:C:0:G:0:T:0:N:0:O:0	0,32,4,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	311	38	20	0.020833333333333332	0.0	A:94:C:0:G:0:T:2:N:0:O:0	A:311:C:0:G:0:T:0:N:0:O:0	0,34,2,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	311	38	20	0.030612244897959183	0.0	A:0:C:91:G:0:T:3:N:0:O:4	A:0:C:311:G:0:T:0:N:0:O:0	0,36,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	309	38	20	0.024691358024691357	0.003236245954692557	A:0:C:77:G:0:T:2:N:0:O:2	A:0:C:308:G:0:T:1:N:0:O:0	0,22,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	197	38	20	0.12048192771084337	0.0	A:0:C:73:G:0:T:10:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,56,10,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	199	38	20	0.0423728813559322	0.0	A:5:C:0:G:111:T:0:N:0:O:2	A:0:C:0:G:198:T:1:N:0:O:0	0,93,5,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	358	38	20	0.02	0.0	A:2:C:0:G:92:T:0:N:0:O:6	A:0:C:0:G:356:T:1:N:0:O:1	2,57,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	358	38	20	0.04504504504504504	0.0	A:0:C:105:G:0:T:5:N:0:O:1	A:0:C:358:G:0:T:0:N:0:O:0	0,93,5,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	4061	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	358	38	20	0.02830188679245283	0.0	A:3:C:0:G:101:T:0:N:0:O:2	A:0:C:0:G:357:T:1:N:0:O:0	3,63,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	235	201	38	20	0.029787234042553193	0.0	A:227:C:0:G:7:T:0:N:0:O:1	A:201:C:0:G:0:T:0:N:0:O:0	6,111,1,124	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	278	201	38	20	0.02877697841726619	0.0	A:8:C:0:G:252:T:0:N:0:O:18	A:0:C:0:G:201:T:0:N:0:O:0	8,156,0,122	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	345	38	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:1:N:0:O:0	A:345:C:0:G:0:T:0:N:0:O:0	2,27,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	345	38	20	0.03125	0.002898550724637681	A:0:C:92:G:0:T:3:N:0:O:1	A:5:C:339:G:0:T:1:N:0:O:0	0,40,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	342	38	20	0.0375	0.0	A:0:C:3:G:0:T:77:N:0:O:0	A:0:C:0:G:0:T:342:N:0:O:0	1,45,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	219	374	38	20	0.0319634703196347	0.0	A:1:C:0:G:201:T:7:N:0:O:10	A:0:C:0:G:374:T:0:N:0:O:0	0,131,7,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	500	38	20	0.02564102564102564	0.0	A:0:C:145:G:0:T:4:N:0:O:7	A:0:C:500:G:0:T:0:N:0:O:0	0,56,4,100	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	148	378	38	20	0.02027027027027027	0.0	A:3:C:0:G:0:T:135:N:0:O:10	A:0:C:0:G:0:T:378:N:0:O:0	0,74,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	378	38	20	0.034482758620689655	0.0	A:84:C:0:G:0:T:3:N:0:O:0	A:378:C:0:G:0:T:0:N:0:O:0	3,24,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	378	38	20	0.03260869565217391	0.007936507936507936	A:0:C:89:G:0:T:3:N:0:O:0	A:0:C:375:G:0:T:3:N:0:O:0	3,28,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	378	38	20	0.04672897196261682	0.007936507936507936	A:0:C:0:G:98:T:5:N:0:O:4	A:0:C:0:G:375:T:3:N:0:O:0	5,44,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	312	38	20	0.022900763358778626	0.0	A:124:C:0:G:3:T:0:N:0:O:4	A:312:C:0:G:0:T:0:N:0:O:0	3,77,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5389	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	312	38	20	0.027522935779816515	0.0	A:0:C:3:G:0:T:104:N:0:O:2	A:0:C:0:G:0:T:312:N:0:O:0	1,75,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	312	38	20	0.024096385542168676	0.0	A:2:C:0:G:80:T:0:N:0:O:1	A:0:C:0:G:311:T:1:N:0:O:0	2,39,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	312	38	20	0.02564102564102564	0.0	A:76:C:2:G:0:T:0:N:0:O:0	A:312:C:0:G:0:T:0:N:0:O:0	2,36,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	205	38	20	0.03278688524590164	0.0	A:4:C:0:G:117:T:0:N:0:O:1	A:0:C:0:G:205:T:0:N:0:O:0	4,72,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	371	38	20	0.13636363636363635	0.0	A:0:C:76:G:0:T:12:N:0:O:0	A:0:C:371:G:0:T:0:N:0:O:0	0,66,12,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	371	38	20	0.02531645569620253	0.0	A:0:C:2:G:0:T:77:N:0:O:0	A:0:C:0:G:0:T:371:N:0:O:0	0,58,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5795	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	371	38	20	0.025423728813559324	0.0026954177897574125	A:115:C:0:G:3:T:0:N:0:O:0	A:370:C:0:G:1:T:0:N:0:O:0	3,55,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	196	38	20	0.025210084033613446	0.0	A:3:C:0:G:113:T:0:N:0:O:3	A:0:C:0:G:195:T:1:N:0:O:0	3,28,0,91	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	200	38	20	0.02702702702702703	0.0	A:0:C:106:G:0:T:3:N:0:O:2	A:0:C:200:G:0:T:0:N:0:O:0	2,39,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	391	38	20	0.02608695652173913	0.0	A:0:C:110:G:0:T:3:N:0:O:2	A:0:C:391:G:0:T:0:N:0:O:0	0,54,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	391	38	20	0.10714285714285714	0.0	A:0:C:74:G:0:T:9:N:0:O:1	A:0:C:391:G:0:T:0:N:0:O:0	0,53,9,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	388	38	20	0.02459016393442623	0.0	A:0:C:119:G:0:T:3:N:0:O:0	A:0:C:388:G:0:T:0:N:0:O:0	1,55,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	209	38	20	0.06896551724137931	0.0	A:0:C:81:G:0:T:6:N:0:O:0	A:0:C:209:G:0:T:0:N:0:O:0	1,59,5,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6261	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	216	38	20	0.02040816326530612	0.0	A:96:C:0:G:0:T:2:N:0:O:0	A:216:C:0:G:0:T:0:N:0:O:0	0,61,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6317	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	220	38	20	0.021052631578947368	0.0	A:2:C:92:G:0:T:1:N:0:O:0	A:0:C:220:G:0:T:0:N:0:O:0	0,53,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	371	38	20	0.030927835051546393	0.0	A:0:C:94:G:0:T:3:N:0:O:0	A:0:C:371:G:0:T:0:N:0:O:0	0,59,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	370	38	20	0.03529411764705882	0.0	A:3:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:370:T:0:N:0:O:0	3,30,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	177	349	38	20	0.02824858757062147	0.0	A:163:C:0:G:5:T:3:N:0:O:6	A:349:C:0:G:0:T:0:N:0:O:0	5,64,0,113	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	348	38	20	0.04891304347826087	0.0028735632183908046	A:0:C:164:G:0:T:9:N:0:O:11	A:0:C:347:G:0:T:1:N:0:O:0	0,108,9,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	343	38	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:342:T:1:N:0:O:0	2,24,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	343	38	20	0.03409090909090909	0.0	A:0:C:84:G:0:T:3:N:0:O:1	A:1:C:342:G:0:T:0:N:0:O:0	0,46,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7031	A	C	A	16	ignore low frequency variant	Pass	False	False	True	62	200	38	20	0.03225806451612903	0.0	A:60:C:2:G:0:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	0,37,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	61	200	38	20	0.08196721311475409	0.0	A:52:C:0:G:0:T:5:N:0:O:4	A:200:C:0:G:0:T:0:N:0:O:0	1,40,4,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	290	38	20	0.03529411764705882	0.0	A:76:C:0:G:3:T:0:N:0:O:6	A:290:C:0:G:0:T:0:N:0:O:0	3,30,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	288	38	20	0.05194805194805195	0.0	A:0:C:0:G:4:T:72:N:0:O:1	A:1:C:0:G:0:T:287:N:0:O:0	3,26,1,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	353	38	20	0.06097560975609756	0.0	A:5:C:0:G:75:T:0:N:0:O:2	A:0:C:0:G:353:T:0:N:0:O:0	5,17,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	353	38	20	0.03	0.0	A:3:C:0:G:94:T:0:N:0:O:3	A:0:C:0:G:350:T:3:N:0:O:0	3,33,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	353	38	20	0.023255813953488372	0.0	A:2:C:0:G:82:T:0:N:0:O:2	A:0:C:0:G:353:T:0:N:0:O:0	2,27,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	353	38	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:353:G:0:T:0:N:0:O:0	2,30,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	131	362	38	20	0.022900763358778626	0.0027624309392265192	A:127:C:0:G:0:T:3:N:0:O:1	A:361:C:0:G:0:T:1:N:0:O:0	3,70,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	395	38	20	0.025974025974025976	0.0	A:75:C:2:G:0:T:0:N:0:O:0	A:394:C:0:G:1:T:0:N:0:O:0	0,46,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	396	38	20	0.03	0.0	A:0:C:3:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:396:N:0:O:0	0,55,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	206	38	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:206:N:0:O:0	0,59,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	377	38	20	0.034482758620689655	0.0	A:83:C:0:G:3:T:0:N:0:O:1	A:377:C:0:G:0:T:0:N:0:O:0	3,26,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	198	38	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:101:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,52,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	8760	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	372	38	20	0.024793388429752067	0.0	A:0:C:117:G:0:T:3:N:0:O:1	A:0:C:372:G:0:T:0:N:0:O:0	0,71,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	53	246	38	20	0.09433962264150944	0.0	A:5:C:1:G:44:T:0:N:0:O:3	A:0:C:0:G:246:T:0:N:0:O:0	5,10,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	198	38	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,64,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	265	195	38	20	0.026415094339622643	0.0	A:0:C:254:G:0:T:7:N:0:O:4	A:0:C:195:G:0:T:0:N:0:O:0	0,138,7,127	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	9809	A	T	A	16	ignore low frequency variant	Pass	False	False	True	222	393	38	20	0.02252252252252252	0.0	A:217:C:0:G:0:T:5:N:0:O:0	A:393:C:0:G:0:T:0:N:0:O:0	5,89,0,133	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	9810	C	G	C	16	ignore low frequency variant	Pass	False	False	True	245	393	38	20	0.02040816326530612	0.0	A:0:C:240:G:5:T:0:N:0:O:0	A:0:C:393:G:0:T:0:N:0:O:0	5,123,0,122	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	376	38	20	0.0297029702970297	0.0	A:3:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:376:T:0:N:0:O:0	3,29,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	9920	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	376	38	20	0.02830188679245283	0.0	A:0:C:0:G:103:T:3:N:0:O:0	A:0:C:0:G:376:T:0:N:0:O:0	3,39,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	376	38	20	0.03333333333333333	0.0	A:2:C:0:G:58:T:0:N:0:O:0	A:0:C:0:G:376:T:0:N:0:O:0	2,10,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	377	38	20	0.039473684210526314	0.0	A:0:C:67:G:0:T:3:N:0:O:6	A:0:C:376:G:0:T:0:N:0:O:1	3,18,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	9973	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	376	38	20	0.02564102564102564	0.0	A:3:C:0:G:113:T:0:N:0:O:1	A:0:C:0:G:376:T:0:N:0:O:0	3,47,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	108	196	38	20	0.027777777777777776	0.0	A:3:C:0:G:0:T:105:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,65,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	10260	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	371	38	20	0.021052631578947368	0.0	A:92:C:0:G:2:T:1:N:0:O:0	A:371:C:0:G:0:T:0:N:0:O:0	2,31,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	371	38	20	0.06382978723404255	0.0	A:6:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:370:T:1:N:0:O:0	5,28,1,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	387	38	20	0.025	0.0	A:116:C:0:G:3:T:0:N:0:O:1	A:387:C:0:G:0:T:0:N:0:O:0	3,45,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	388	38	20	0.022727272727272728	0.0	A:0:C:2:G:0:T:86:N:0:O:0	A:0:C:0:G:0:T:388:N:0:O:0	1,48,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	282	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:91:N:0:O:6	A:0:C:0:G:0:T:282:N:0:O:0	0,63,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	11075	T	C	T	1	near depth threshold	Alarm	False	False	True	27	188	38	20	0.037037037037037035	0.0	A:0:C:1:G:0:T:26:N:0:O:0	A:0:C:0:G:0:T:188:N:0:O:0	1,16,0,11	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	391	38	20	0.036585365853658534	0.0	A:0:C:0:G:3:T:79:N:0:O:0	A:0:C:0:G:0:T:391:N:0:O:0	3,60,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	67	393	38	20	0.04477611940298507	0.0	A:0:C:0:G:63:T:3:N:0:O:1	A:0:C:0:G:393:T:0:N:0:O:0	3,44,0,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	11555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	357	38	20	0.02127659574468085	0.0056022408963585435	A:1:C:0:G:85:T:2:N:0:O:6	A:0:C:0:G:355:T:2:N:0:O:0	1,55,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	197	38	20	0.02830188679245283	0.0	A:0:C:100:G:0:T:3:N:0:O:3	A:0:C:197:G:0:T:0:N:0:O:0	0,80,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	11674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	198	38	20	0.018691588785046728	0.0	A:0:C:97:G:0:T:2:N:0:O:8	A:0:C:197:G:0:T:0:N:0:O:1	0,71,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	11732	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	197	38	20	0.029411764705882353	0.0	A:66:C:0:G:2:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	2,36,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	11747	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	197	38	20	0.02857142857142857	0.0	A:0:C:100:G:0:T:3:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	1,69,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	197	38	20	0.021052631578947368	0.0	A:93:C:0:G:0:T:2:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	2,62,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	578	38	20	0.02459016393442623	0.0	A:3:C:0:G:118:T:0:N:0:O:1	A:0:C:0:G:578:T:0:N:0:O:0	2,37,1,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	361	38	20	0.02564102564102564	0.0	A:76:C:0:G:2:T:0:N:0:O:0	A:361:C:0:G:0:T:0:N:0:O:0	2,39,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	361	38	20	0.045454545454545456	0.002770083102493075	A:4:C:0:G:65:T:0:N:0:O:19	A:1:C:0:G:359:T:0:N:0:O:1	0,69,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	361	38	20	0.036585365853658534	0.0	A:0:C:79:G:0:T:3:N:0:O:0	A:0:C:361:G:0:T:0:N:0:O:0	3,43,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	361	38	20	0.024691358024691357	0.002770083102493075	A:1:C:78:G:0:T:2:N:0:O:0	A:0:C:360:G:0:T:1:N:0:O:0	2,42,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	200	38	20	0.028169014084507043	0.0	A:1:C:64:G:0:T:2:N:0:O:4	A:0:C:200:G:0:T:0:N:0:O:0	0,47,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	199	38	20	0.025	0.0	A:73:C:0:G:2:T:0:N:0:O:5	A:199:C:0:G:0:T:0:N:0:O:0	2,44,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	199	38	20	0.0392156862745098	0.0	A:2:C:0:G:46:T:0:N:0:O:3	A:0:C:0:G:199:T:0:N:0:O:0	2,18,0,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	178	392	38	20	0.028089887640449437	0.0	A:5:C:0:G:172:T:0:N:0:O:1	A:0:C:0:G:392:T:0:N:0:O:0	5,83,0,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	328	38	20	0.053763440860215055	0.0	A:0:C:86:G:0:T:5:N:0:O:2	A:0:C:328:G:0:T:0:N:0:O:0	0,74,5,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	377	38	20	0.027777777777777776	0.0	A:98:C:0:G:3:T:0:N:0:O:7	A:377:C:0:G:0:T:0:N:0:O:0	3,37,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	377	38	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:377:C:0:G:0:T:0:N:0:O:0	2,38,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	377	38	20	0.028037383177570093	0.0	A:3:C:0:G:104:T:0:N:0:O:0	A:0:C:0:G:377:T:0:N:0:O:0	3,33,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	377	38	20	0.0625	0.0	A:7:C:0:G:103:T:0:N:0:O:2	A:0:C:0:G:376:T:1:N:0:O:0	7,38,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12963	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	377	38	20	0.020202020202020204	0.0	A:2:C:0:G:95:T:0:N:0:O:2	A:0:C:0:G:376:T:1:N:0:O:0	2,30,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	377	38	20	0.0707070707070707	0.0	A:90:C:0:G:7:T:0:N:0:O:2	A:376:C:0:G:0:T:1:N:0:O:0	7,28,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	196	38	20	0.025	0.0	A:2:C:0:G:76:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	2,25,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	346	38	20	0.027777777777777776	0.0	A:0:C:138:G:0:T:4:N:0:O:2	A:0:C:346:G:0:T:0:N:0:O:0	0,64,4,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	345	38	20	0.021505376344086023	0.002898550724637681	A:0:C:180:G:0:T:4:N:0:O:2	A:1:C:343:G:0:T:1:N:0:O:0	1,52,3,134	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	222	345	38	20	0.02252252252252252	0.0	A:5:C:0:G:214:T:0:N:0:O:3	A:0:C:0:G:344:T:1:N:0:O:0	5,55,0,167	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13405	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	392	38	20	0.021505376344086023	0.0	A:0:C:91:G:0:T:2:N:0:O:0	A:0:C:392:G:0:T:0:N:0:O:0	0,53,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	394	38	20	0.07692307692307693	0.0	A:0:C:47:G:0:T:4:N:0:O:1	A:0:C:394:G:0:T:0:N:0:O:0	0,47,4,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	394	38	20	0.022727272727272728	0.0	A:2:C:0:G:78:T:0:N:0:O:8	A:0:C:0:G:394:T:0:N:0:O:0	2,29,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	395	38	20	0.020833333333333332	0.0	A:0:C:46:G:0:T:1:N:0:O:1	A:2:C:392:G:1:T:0:N:0:O:0	0,20,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	121	396	38	20	0.01652892561983471	0.0	A:2:C:0:G:0:T:95:N:0:O:24	A:0:C:0:G:0:T:395:N:0:O:1	1,50,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	288	38	20	0.034782608695652174	0.0	A:4:C:0:G:104:T:0:N:0:O:7	A:0:C:0:G:288:T:0:N:0:O:0	4,38,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	290	38	20	0.022222222222222223	0.0	A:2:C:0:G:86:T:0:N:0:O:2	A:0:C:0:G:290:T:0:N:0:O:0	2,29,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	13943	A	C	A	16	ignore low frequency variant	Pass	False	False	True	123	191	38	20	0.024390243902439025	0.0	A:117:C:3:G:0:T:0:N:0:O:3	A:191:C:0:G:0:T:0:N:0:O:0	0,55,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	377	38	20	0.030612244897959183	0.0	A:3:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:377:T:0:N:0:O:0	3,27,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	200	38	20	0.018072289156626505	0.0	A:0:C:129:G:0:T:3:N:0:O:34	A:0:C:199:G:0:T:0:N:0:O:1	0,79,3,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	109	370	38	20	1.0	0.9945945945945946	A:0:C:0:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:368:N:0:O:2	50,50,59,59	404.185	1491.4	yes	.	.	.	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	371	38	20	0.025423728813559324	0.0	A:0:C:115:G:0:T:3:N:0:O:0	A:0:C:371:G:0:T:0:N:0:O:0	0,69,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	14573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	226	403	38	20	0.02654867256637168	0.0024813895781637717	A:0:C:219:G:0:T:6:N:0:O:1	A:0:C:402:G:0:T:1:N:0:O:0	0,149,6,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	198	38	20	0.025	0.0	A:0:C:117:G:0:T:3:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,86,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	355	38	20	0.0380952380952381	0.0	A:4:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:355:T:0:N:0:O:0	4,55,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	14824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	355	38	20	0.024193548387096774	0.0	A:121:C:0:G:3:T:0:N:0:O:0	A:355:C:0:G:0:T:0:N:0:O:0	3,73,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	374	38	20	0.047619047619047616	0.0	A:0:C:3:G:0:T:58:N:0:O:2	A:0:C:0:G:0:T:374:N:0:O:0	0,55,3,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	383	38	20	0.022222222222222223	0.0	A:0:C:87:G:0:T:2:N:0:O:1	A:0:C:383:G:0:T:0:N:0:O:0	0,58,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	386	38	20	0.024	0.0	A:0:C:0:G:122:T:3:N:0:O:0	A:1:C:0:G:385:T:0:N:0:O:0	0,83,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	15930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	357	38	20	0.023809523809523808	0.0	A:0:C:3:G:0:T:123:N:0:O:0	A:0:C:0:G:0:T:357:N:0:O:0	0,53,3,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	358	38	20	0.047619047619047616	0.0	A:1:C:3:G:0:T:45:N:0:O:14	A:0:C:0:G:0:T:358:N:0:O:0	0,39,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	15951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	358	38	20	0.07142857142857142	0.0	A:0:C:51:G:0:T:4:N:0:O:1	A:0:C:358:G:0:T:0:N:0:O:0	0,21,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	358	38	20	0.13636363636363635	0.0	A:0:C:56:G:0:T:9:N:0:O:1	A:3:C:355:G:0:T:0:N:0:O:0	0,33,9,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	16000	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	358	38	20	0.029411764705882353	0.0	A:0:C:59:G:0:T:2:N:0:O:7	A:0:C:358:G:0:T:0:N:0:O:0	0,9,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	357	38	20	0.026785714285714284	0.0	A:3:C:0:G:100:T:0:N:0:O:9	A:0:C:0:G:357:T:0:N:0:O:0	2,30,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	357	38	20	0.06521739130434782	0.0	A:0:C:85:G:0:T:6:N:0:O:1	A:0:C:357:G:0:T:0:N:0:O:0	0,56,6,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	376	38	20	0.046511627906976744	0.0	A:0:C:81:G:0:T:4:N:0:O:1	A:1:C:375:G:0:T:0:N:0:O:0	0,45,4,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	182	38	20	0.0297029702970297	0.0	A:3:C:0:G:97:T:1:N:0:O:0	A:0:C:0:G:180:T:2:N:0:O:0	3,47,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	182	38	20	0.04716981132075472	0.005494505494505495	A:0:C:0:G:96:T:5:N:0:O:5	A:0:C:0:G:181:T:1:N:0:O:0	3,60,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	118	38	20	0.02	0.0	A:94:C:0:G:2:T:0:N:0:O:4	A:118:C:0:G:0:T:0:N:0:O:0	2,39,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	198	38	20	0.02531645569620253	0.0	A:2:C:0:G:73:T:0:N:0:O:4	A:0:C:0:G:198:T:0:N:0:O:0	2,8,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	202	38	20	0.043478260869565216	0.0	A:0:C:0:G:4:T:88:N:0:O:0	A:0:C:3:G:0:T:199:N:0:O:0	0,52,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	201	38	20	0.023809523809523808	0.0	A:82:C:0:G:2:T:0:N:0:O:0	A:201:C:0:G:0:T:0:N:0:O:0	0,30,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	374	38	20	0.022222222222222223	0.0	A:86:C:0:G:2:T:0:N:0:O:2	A:374:C:0:G:0:T:0:N:0:O:0	2,24,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17234	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	374	38	20	0.02631578947368421	0.0	A:0:C:0:G:3:T:111:N:0:O:0	A:0:C:0:G:0:T:374:N:0:O:0	3,53,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	203	38	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:203:G:0:T:0:N:0:O:0	1,48,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	379	38	20	0.06896551724137931	0.0	A:1:C:79:G:0:T:6:N:0:O:1	A:0:C:379:G:0:T:0:N:0:O:0	0,53,6,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	382	38	20	0.05357142857142857	0.0	A:6:C:0:G:106:T:0:N:0:O:0	A:0:C:0:G:382:T:0:N:0:O:0	6,37,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	382	38	20	0.019230769230769232	0.0	A:0:C:98:G:0:T:2:N:0:O:4	A:1:C:381:G:0:T:0:N:0:O:0	0,48,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	393	38	20	0.02	0.0	A:0:C:195:G:0:T:4:N:0:O:1	A:1:C:392:G:0:T:0:N:0:O:0	3,113,1,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	392	38	20	0.022598870056497175	0.0	A:0:C:169:G:0:T:4:N:0:O:4	A:0:C:392:G:0:T:0:N:0:O:0	2,109,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	213	392	38	20	0.028169014084507043	0.0	A:0:C:197:G:0:T:6:N:0:O:10	A:0:C:392:G:0:T:0:N:0:O:0	0,127,6,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	375	38	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:375:T:0:N:0:O:0	0,65,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	375	38	20	0.028037383177570093	0.0	A:0:C:101:G:0:T:3:N:0:O:3	A:0:C:375:G:0:T:0:N:0:O:0	0,82,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	17972	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	370	38	20	0.03278688524590164	0.0	A:4:C:0:G:117:T:0:N:0:O:1	A:0:C:1:G:369:T:0:N:0:O:0	4,62,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	236	383	38	20	0.0211864406779661	0.0	A:5:C:0:G:228:T:0:N:0:O:3	A:0:C:0:G:383:T:0:N:0:O:0	5,102,0,134	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18099	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	362	38	20	0.02631578947368421	0.0	A:0:C:3:G:0:T:107:N:0:O:4	A:0:C:0:G:0:T:362:N:0:O:0	0,62,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	198	38	20	0.02185792349726776	0.0	A:0:C:179:G:0:T:4:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,83,4,100	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18467	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	395	38	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:395:T:0:N:0:O:0	1,78,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18634	G	T	G	16	ignore low frequency variant	Pass	False	False	True	248	394	38	20	0.03225806451612903	0.0	A:0:C:0:G:239:T:8:N:0:O:1	A:0:C:0:G:394:T:0:N:0:O:0	0,141,8,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	343	38	20	0.03260869565217391	0.0029154518950437317	A:88:C:0:G:3:T:0:N:0:O:1	A:342:C:0:G:1:T:0:N:0:O:0	3,46,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	346	38	20	0.02912621359223301	0.0	A:3:C:0:G:99:T:0:N:0:O:1	A:0:C:0:G:344:T:2:N:0:O:0	3,48,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	387	38	20	0.04285714285714286	0.0	A:3:C:0:G:66:T:0:N:0:O:1	A:0:C:0:G:385:T:2:N:0:O:0	3,27,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	18878	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	387	38	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:387:N:0:O:0	0,39,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	327	38	20	0.024	0.0	A:0:C:122:G:0:T:3:N:0:O:0	A:1:C:326:G:0:T:0:N:0:O:0	0,64,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	19484	C	T	N	18	ambiguous base in consensus	Check	False	False	False	73	303	38	20	0.1917808219178082	0.0	A:0:C:59:G:0:T:14:N:0:O:0	A:0:C:303:G:0:T:0:N:0:O:0	0,48,14,25	.	55.4	no	.	.	mismatch(n+s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	157	353	38	20	0.01910828025477707	0.0	A:3:C:0:G:0:T:130:N:0:O:24	A:0:C:0:G:0:T:353:N:0:O:0	0,90,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	353	38	20	0.026785714285714284	0.0	A:108:C:1:G:0:T:3:N:0:O:0	A:353:C:0:G:0:T:0:N:0:O:0	0,72,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	279	38	20	0.030303030303030304	0.0	A:0:C:0:G:3:T:96:N:0:O:0	A:0:C:0:G:0:T:279:N:0:O:0	0,33,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	295	38	20	0.030303030303030304	0.0	A:0:C:96:G:0:T:3:N:0:O:0	A:0:C:295:G:0:T:0:N:0:O:0	0,34,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	20593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	176	385	38	20	0.022727272727272728	0.0	A:171:C:0:G:4:T:0:N:0:O:1	A:385:C:0:G:0:T:0:N:0:O:0	4,111,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	20714	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	390	38	20	0.02040816326530612	0.0	A:4:C:0:G:190:T:0:N:0:O:2	A:0:C:0:G:390:T:0:N:0:O:0	4,126,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	167	390	38	20	0.03592814371257485	0.0	A:161:C:0:G:6:T:0:N:0:O:0	A:390:C:0:G:0:T:0:N:0:O:0	6,96,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	375	38	20	0.03389830508474576	0.0	A:4:C:0:G:114:T:0:N:0:O:0	A:0:C:0:G:375:T:0:N:0:O:0	4,31,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21092	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	195	38	20	0.01904761904761905	0.0	A:0:C:97:G:0:T:2:N:0:O:6	A:0:C:195:G:0:T:0:N:0:O:0	0,44,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	93	38	20	0.09375	0.0	A:0:C:0:G:77:T:9:N:0:O:10	A:0:C:0:G:93:T:0:N:0:O:0	0,63,9,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	164	38	20	0.043010752688172046	0.0	A:0:C:89:G:0:T:4:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	0,48,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	128	38	20	0.021505376344086023	0.0	A:0:C:91:G:0:T:2:N:0:O:0	A:1:C:127:G:0:T:0:N:0:O:0	0,48,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	191	38	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,48,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	326	38	20	0.030612244897959183	0.0	A:95:C:0:G:3:T:0:N:0:O:0	A:326:C:0:G:0:T:0:N:0:O:0	3,27,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	326	38	20	0.03305785123966942	0.0	A:4:C:0:G:115:T:0:N:0:O:2	A:0:C:0:G:325:T:1:N:0:O:0	4,43,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21508	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	328	38	20	0.02	0.0	A:2:C:0:G:88:T:0:N:0:O:10	A:0:C:0:G:327:T:0:N:0:O:1	2,17,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	338	38	20	0.07792207792207792	0.0	A:0:C:65:G:0:T:6:N:0:O:6	A:0:C:338:G:0:T:0:N:0:O:0	4,21,2,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	343	38	20	0.030303030303030304	0.0	A:0:C:3:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:343:N:0:O:0	0,74,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	343	38	20	0.03225806451612903	0.0	A:85:C:0:G:0:T:4:N:0:O:35	A:343:C:0:G:0:T:0:N:0:O:0	0,95,4,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	366	38	20	0.05042016806722689	0.0	A:0:C:0:G:6:T:113:N:0:O:0	A:0:C:0:G:0:T:366:N:0:O:0	6,54,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	56	38	20	0.04040404040404041	0.0	A:0:C:0:G:4:T:92:N:0:O:3	A:0:C:0:G:0:T:56:N:0:O:0	4,41,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	22809	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	353	38	20	0.03305785123966942	0.0	A:4:C:0:G:104:T:0:N:0:O:13	A:0:C:0:G:352:T:0:N:0:O:1	0,90,4,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	400	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:94:N:0:O:3	A:0:C:0:G:0:T:400:N:0:O:0	0,61,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	388	38	20	0.0273972602739726	0.0	A:71:C:0:G:2:T:0:N:0:O:0	A:388:C:0:G:0:T:0:N:0:O:0	0,39,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	392	38	20	0.02564102564102564	0.0	A:114:C:0:G:3:T:0:N:0:O:0	A:392:C:0:G:0:T:0:N:0:O:0	3,45,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	128	348	38	20	0.9375	1.0	A:0:C:0:G:120:T:0:N:0:O:8	A:0:C:0:G:348:T:0:N:0:O:0	64,72,56,56	273.703	1701.9	yes	.	.	.	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	210	38	20	0.029411764705882353	0.0	A:99:C:0:G:3:T:0:N:0:O:0	A:210:C:0:G:0:T:0:N:0:O:0	3,39,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	358	38	20	0.04	0.0	A:4:C:0:G:90:T:0:N:0:O:6	A:0:C:0:G:358:T:0:N:0:O:0	4,37,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	359	38	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:358:C:0:G:0:T:0:N:0:O:1	2,46,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23586	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	377	38	20	0.02608695652173913	0.0	A:110:C:0:G:3:T:0:N:0:O:2	A:377:C:0:G:0:T:0:N:0:O:0	3,57,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	377	38	20	0.038834951456310676	0.0	A:98:C:0:G:4:T:0:N:0:O:1	A:377:C:0:G:0:T:0:N:0:O:0	4,49,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	354	38	20	0.10989010989010989	0.0	A:0:C:79:G:0:T:10:N:0:O:2	A:0:C:354:G:0:T:0:N:0:O:0	0,67,10,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	356	38	20	0.023529411764705882	0.0	A:2:C:0:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:356:N:0:O:0	1,19,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	357	38	20	0.046296296296296294	0.0028011204481792717	A:5:C:0:G:102:T:0:N:0:O:1	A:1:C:0:G:355:T:1:N:0:O:0	5,22,0,86	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	196	38	20	0.09195402298850575	0.0	A:0:C:79:G:0:T:8:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,62,8,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24239	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	383	38	20	0.020618556701030927	0.0	A:0:C:0:G:93:T:2:N:0:O:2	A:0:C:0:G:383:T:0:N:0:O:0	0,58,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	383	38	20	0.03896103896103896	0.0	A:0:C:74:G:0:T:3:N:0:O:0	A:0:C:383:G:0:T:0:N:0:O:0	0,53,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24241	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	383	38	20	0.02631578947368421	0.0	A:72:C:0:G:2:T:0:N:0:O:2	A:383:C:0:G:0:T:0:N:0:O:0	1,49,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	384	38	20	0.08695652173913043	0.0	A:0:C:58:G:0:T:6:N:0:O:5	A:0:C:383:G:0:T:0:N:0:O:1	0,56,6,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	383	38	20	0.08737864077669903	0.0	A:9:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:382:T:1:N:0:O:0	9,24,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	383	38	20	0.041666666666666664	0.0	A:4:C:0:G:89:T:0:N:0:O:3	A:0:C:0:G:383:T:0:N:0:O:0	4,18,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	202	38	20	0.018867924528301886	0.0	A:2:C:0:G:98:T:0:N:0:O:6	A:0:C:0:G:201:T:0:N:0:O:1	1,52,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	366	38	20	0.020202020202020204	0.0	A:0:C:97:G:0:T:2:N:0:O:0	A:0:C:366:G:0:T:0:N:0:O:0	0,75,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	67	366	38	20	0.07462686567164178	0.0	A:0:C:5:G:0:T:61:N:0:O:1	A:0:C:0:G:0:T:366:N:0:O:0	5,38,0,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	199	38	20	0.02040816326530612	0.0	A:96:C:2:G:0:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	2,50,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	396	38	20	0.0625	0.0	A:90:C:0:G:0:T:6:N:0:O:0	A:396:C:0:G:0:T:0:N:0:O:0	6,43,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	396	38	20	0.02727272727272727	0.0	A:107:C:0:G:3:T:0:N:0:O:0	A:396:C:0:G:0:T:0:N:0:O:0	3,41,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	396	38	20	0.021739130434782608	0.0	A:0:C:0:G:75:T:2:N:0:O:15	A:0:C:0:G:394:T:0:N:0:O:2	1,52,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	107	391	38	20	1.0	1.0	A:0:C:0:G:0:T:107:N:0:O:0	A:0:C:0:G:0:T:391:N:0:O:0	42,42,65,65	280.0	2051.6	yes	.	.	.	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	25673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	199	38	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:93:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	0,65,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	199	38	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,65,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	372	38	20	0.031578947368421054	0.0	A:3:C:0:G:89:T:0:N:0:O:3	A:0:C:0:G:371:T:1:N:0:O:0	3,36,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	372	38	20	0.019417475728155338	0.0	A:97:C:0:G:0:T:2:N:0:O:4	A:372:C:0:G:0:T:0:N:0:O:0	0,79,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	372	38	20	0.027777777777777776	0.0	A:102:C:0:G:3:T:0:N:0:O:3	A:372:C:0:G:0:T:0:N:0:O:0	3,49,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	372	38	20	0.04395604395604396	0.0	A:86:C:0:G:4:T:0:N:0:O:1	A:371:C:0:G:0:T:1:N:0:O:0	4,37,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	372	38	20	0.03225806451612903	0.0	A:0:C:89:G:0:T:3:N:0:O:1	A:0:C:372:G:0:T:0:N:0:O:0	2,57,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	199	38	20	0.052083333333333336	0.0	A:5:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	5,43,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	207	38	20	0.03125	0.0	A:122:C:0:G:4:T:0:N:0:O:2	A:207:C:0:G:0:T:0:N:0:O:0	3,64,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26029	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	399	38	20	0.03389830508474576	0.0	A:0:C:114:G:0:T:4:N:0:O:0	A:0:C:399:G:0:T:0:N:0:O:0	0,73,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	142	402	38	20	0.028169014084507043	0.0024875621890547263	A:4:C:132:G:0:T:0:N:0:O:6	A:1:C:400:G:0:T:0:N:0:O:1	4,79,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26233	G	T	T	13	new position validated by illumina	Pass	False	True	True	285	389	38	20	0.9964912280701754	1.0	A:0:C:0:G:0:T:284:N:0:O:1	A:0:C:0:G:0:T:389:N:0:O:0	177,178,107,107	209.237	1411.8	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26314	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	375	38	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:375:T:0:N:0:O:0	2,89,0,6	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	199	377	38	20	0.01507537688442211	0.0	A:0:C:136:G:0:T:3:N:0:O:60	A:0:C:377:G:0:T:0:N:0:O:0	0,134,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	377	38	20	0.03529411764705882	0.0	A:0:C:3:G:0:T:82:N:0:O:0	A:0:C:0:G:0:T:377:N:0:O:0	0,72,3,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	377	38	20	0.025	0.0	A:0:C:77:G:0:T:2:N:0:O:1	A:1:C:376:G:0:T:0:N:0:O:0	1,42,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	197	38	20	0.033707865168539325	0.0	A:3:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	3,46,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	197	38	20	0.046153846153846156	0.0	A:3:C:0:G:62:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	3,24,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	222	396	38	20	0.04954954954954955	0.0	A:0:C:211:G:0:T:11:N:0:O:0	A:0:C:396:G:0:T:0:N:0:O:0	0,179,11,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	250	395	38	20	0.044	0.0	A:0:C:11:G:0:T:239:N:0:O:0	A:0:C:0:G:0:T:395:N:0:O:0	0,186,11,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	216	38	20	0.031578947368421054	0.0	A:0:C:90:G:0:T:3:N:0:O:2	A:0:C:216:G:0:T:0:N:0:O:0	3,45,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	26607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	217	38	20	0.024390243902439025	0.0	A:0:C:114:G:0:T:3:N:0:O:6	A:0:C:217:G:0:T:0:N:0:O:0	0,63,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	382	38	20	0.028037383177570093	0.0	A:0:C:3:G:0:T:104:N:0:O:0	A:0:C:0:G:0:T:382:N:0:O:0	0,69,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	382	38	20	0.06329113924050633	0.0	A:5:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:382:T:0:N:0:O:0	5,12,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	382	38	20	0.031578947368421054	0.0	A:0:C:90:G:0:T:3:N:0:O:2	A:2:C:380:G:0:T:0:N:0:O:0	0,68,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	178	393	38	20	0.02247191011235955	0.0	A:0:C:165:G:0:T:4:N:0:O:9	A:1:C:392:G:0:T:0:N:0:O:0	0,145,4,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	373	38	20	0.046511627906976744	0.0	A:4:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:373:T:0:N:0:O:0	4,20,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	372	38	20	0.04918032786885246	0.0	A:0:C:57:G:0:T:3:N:0:O:1	A:0:C:372:G:0:T:0:N:0:O:0	0,50,3,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	372	38	20	0.057971014492753624	0.0	A:0:C:64:G:0:T:4:N:0:O:1	A:0:C:372:G:0:T:0:N:0:O:0	0,53,4,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27240	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	300	38	20	0.02586206896551724	0.0033333333333333335	A:0:C:0:G:107:T:3:N:0:O:6	A:0:C:0:G:299:T:1:N:0:O:0	0,51,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	200	38	20	0.0375	0.0	A:3:C:0:G:77:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,19,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27485	T	A	T	16	ignore low frequency variant	Pass	False	False	True	299	383	38	20	0.020066889632107024	0.0	A:6:C:0:G:0:T:223:N:0:O:70	A:0:C:0:G:0:T:382:N:0:O:1	3,194,3,105	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	362	38	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:362:C:0:G:0:T:0:N:0:O:0	2,43,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27877	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	365	38	20	0.0234375	0.0	A:3:C:0:G:125:T:0:N:0:O:0	A:0:C:0:G:365:T:0:N:0:O:0	2,75,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	367	38	20	0.028846153846153848	0.0	A:3:C:0:G:101:T:0:N:0:O:0	A:0:C:1:G:364:T:2:N:0:O:0	3,42,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	367	38	20	0.02830188679245283	0.0	A:103:C:0:G:3:T:0:N:0:O:0	A:367:C:0:G:0:T:0:N:0:O:0	3,44,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	190	38	20	0.024691358024691357	0.0	A:0:C:2:G:0:T:79:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	2,51,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28150	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	190	38	20	0.024390243902439025	0.0	A:2:C:0:G:0:T:80:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	2,50,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28151	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	190	38	20	0.02666666666666667	0.0	A:0:C:2:G:0:T:73:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	2,49,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	379	38	20	0.024691358024691357	0.0	A:0:C:79:G:0:T:2:N:0:O:0	A:0:C:379:G:0:T:0:N:0:O:0	0,55,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28320	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	379	38	20	0.0380952380952381	0.0	A:0:C:101:G:0:T:4:N:0:O:0	A:0:C:379:G:0:T:0:N:0:O:0	0,56,4,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	198	38	20	0.020618556701030927	0.0	A:2:C:86:G:0:T:1:N:0:O:8	A:0:C:198:G:0:T:0:N:0:O:0	2,59,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	196	38	20	0.04838709677419355	0.0	A:0:C:55:G:0:T:3:N:0:O:4	A:2:C:194:G:0:T:0:N:0:O:0	0,25,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	310	38	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:310:G:0:T:0:N:0:O:0	0,23,2,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	310	38	20	0.020833333333333332	0.0	A:2:C:0:G:92:T:2:N:0:O:0	A:0:C:0:G:310:T:0:N:0:O:0	0,22,2,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	310	38	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:310:T:0:N:0:O:0	0,57,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	276	38	20	0.02631578947368421	0.0	A:0:C:101:G:0:T:3:N:0:O:10	A:0:C:276:G:0:T:0:N:0:O:0	0,62,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28688	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	180	38	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:180:N:0:O:0	1,42,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	28718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	299	38	20	0.023529411764705882	0.0	A:0:C:165:G:0:T:4:N:0:O:1	A:2:C:297:G:0:T:0:N:0:O:0	0,58,4,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	207	38	20	0.03409090909090909	0.0	A:0:C:84:G:0:T:3:N:0:O:1	A:0:C:207:G:0:T:0:N:0:O:0	0,11,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	215	38	20	0.075	0.0	A:0:C:70:G:0:T:6:N:0:O:4	A:0:C:215:G:0:T:0:N:0:O:0	0,14,6,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28824	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	282	38	20	0.02	0.0	A:0:C:48:G:0:T:1:N:0:O:1	A:0:C:282:G:0:T:0:N:0:O:0	1,18,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	287	38	20	0.031914893617021274	0.0	A:0:C:91:G:0:T:3:N:0:O:0	A:0:C:287:G:0:T:0:N:0:O:0	0,12,3,82	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	277	38	20	0.02857142857142857	0.0	A:0:C:64:G:0:T:2:N:0:O:4	A:0:C:277:G:0:T:0:N:0:O:0	0,9,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	329	38	20	0.07432432432432433	0.0	A:0:C:135:G:0:T:11:N:0:O:2	A:1:C:328:G:0:T:0:N:0:O:0	0,84,11,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29055	A	C	A	1	near depth threshold	Alarm	False	False	True	39	196	38	20	0.02564102564102564	0.0	A:38:C:1:G:0:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	0,7,1,32	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29056	A	G	A	1	near depth threshold	Alarm	False	False	True	31	196	38	20	0.03225806451612903	0.0	A:30:C:0:G:1:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	0,0,1,31	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29194	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	391	38	20	0.025	0.0	A:0:C:0:G:2:T:76:N:0:O:2	A:0:C:1:G:0:T:390:N:0:O:0	2,35,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29195	G	C	G	16	ignore low frequency variant	Pass	False	False	True	95	391	38	20	0.021052631578947368	0.0	A:0:C:2:G:79:T:0:N:0:O:14	A:0:C:0:G:391:T:0:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	80	391	38	20	0.025	0.0	A:0:C:2:G:77:T:0:N:0:O:1	A:0:C:0:G:391:T:0:N:0:O:0	1,39,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	283	38	20	0.02631578947368421	0.0	A:0:C:2:G:0:T:74:N:0:O:0	A:0:C:0:G:0:T:283:N:0:O:0	0,58,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29389	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.020202020202020204	0.0	A:92:C:0:G:2:T:0:N:0:O:5	A:197:C:0:G:0:T:0:N:0:O:0	2,55,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	197	38	20	0.037037037037037035	0.0	A:78:C:0:G:3:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	3,39,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	199	38	20	0.02097902097902098	0.0	A:3:C:0:G:136:T:0:N:0:O:4	A:0:C:0:G:199:T:0:N:0:O:0	3,77,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	198	38	20	0.029411764705882353	0.0	A:3:C:0:G:76:T:0:N:0:O:23	A:0:C:0:G:198:T:0:N:0:O:0	3,34,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	199	38	20	0.020833333333333332	0.0	A:141:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,76,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	260	220	38	20	0.023076923076923078	0.0	A:252:C:1:G:6:T:0:N:0:O:1	A:220:C:0:G:0:T:0:N:0:O:0	6,119,0,141	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	29679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	108	38	20	0.02054794520547945	0.0	A:0:C:140:G:0:T:3:N:0:O:3	A:0:C:108:G:0:T:0:N:0:O:0	0,78,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00026	artic-pipeline	NB08	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00026	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	141	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	65	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	176	38	20	0.020833333333333332	0.0	A:0:C:1:G:0:T:46:N:0:O:1	A:0:C:0:G:0:T:176:N:0:O:0	0,18,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	66	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	176	38	20	0.043478260869565216	0.0	A:0:C:44:G:0:T:2:N:0:O:0	A:1:C:175:G:0:T:0:N:0:O:0	0,20,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	39	178	38	20	0.05128205128205128	0.0	A:0:C:37:G:0:T:2:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	0,20,2,19	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	104	T	C	T	1	near depth threshold	Alarm	False	False	True	45	179	38	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:44:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,18,1,27	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	181	38	20	0.02127659574468085	0.0	A:44:C:0:G:1:T:0:N:0:O:2	A:181:C:0:G:0:T:0:N:0:O:0	1,16,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	114	G	A	G	1	near depth threshold	Alarm	False	False	True	42	181	38	20	0.023809523809523808	0.0	A:1:C:0:G:40:T:0:N:0:O:1	A:0:C:0:G:180:T:1:N:0:O:0	1,19,0,23	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	131	A	G	A	1	near depth threshold	Alarm	False	False	True	43	186	38	20	0.023255813953488372	0.0	A:42:C:0:G:1:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	1,18,0,25	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	132	A	T	A	1	near depth threshold	Alarm	False	False	True	42	187	38	20	0.023809523809523808	0.0	A:41:C:0:G:0:T:1:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	0,18,1,24	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	134	T	C	T	1	near depth threshold	Alarm	False	False	True	43	187	38	20	0.023255813953488372	0.0	A:0:C:1:G:0:T:42:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	0,20,1,23	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	181	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	190	38	20	0.021739130434782608	0.0	A:0:C:1:G:0:T:45:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	0,26,1,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	42	178	38	20	0.9285714285714286	1.0	A:0:C:0:G:0:T:39:N:0:O:3	A:0:C:0:G:0:T:178:N:0:O:0	15,18,24,24	209.237	1570.4	yes	depth near threshold	.	.	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	307	C	T	C	1	near depth threshold	Alarm	False	False	True	29	178	38	20	0.034482758620689655	0.0	A:0:C:25:G:0:T:1:N:0:O:3	A:0:C:178:G:0:T:0:N:0:O:0	1,5,0,24	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	341	38	20	0.038461538461538464	0.0	A:0:C:150:G:0:T:6:N:0:O:0	A:0:C:341:G:0:T:0:N:0:O:0	0,101,6,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	457	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	316	38	20	0.020202020202020204	0.0	A:0:C:0:G:2:T:94:N:0:O:3	A:0:C:0:G:0:T:316:N:0:O:0	1,14,1,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	244	38	20	0.038461538461538464	0.0	A:4:C:0:G:100:T:0:N:0:O:0	A:0:C:0:G:244:T:0:N:0:O:0	0,56,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	818	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	290	38	20	0.04040404040404041	0.0	A:0:C:4:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:290:N:0:O:0	0,49,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	186	38	20	0.9927536231884058	1.0	A:0:C:0:G:0:T:137:N:0:O:1	A:0:C:0:G:0:T:186:N:0:O:0	84,85,53,53	210.0	1548.4	yes	.	.	.	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	186	38	20	0.031578947368421054	0.0	A:0:C:83:G:0:T:3:N:0:O:9	A:1:C:185:G:0:T:0:N:0:O:0	0,48,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	186	38	20	0.023255813953488372	0.0	A:84:C:0:G:2:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	2,47,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1143	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	186	38	20	0.02040816326530612	0.0	A:2:C:0:G:0:T:77:N:0:O:19	A:0:C:0:G:0:T:186:N:0:O:0	2,49,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	186	38	20	0.023076923076923078	0.0	A:0:C:124:G:0:T:3:N:0:O:3	A:1:C:185:G:0:T:0:N:0:O:0	0,92,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	1196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	186	38	20	0.021739130434782608	0.0	A:3:C:0:G:134:T:0:N:0:O:1	A:0:C:0:G:186:T:0:N:0:O:0	3,88,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	186	38	20	0.0759493670886076	0.0	A:6:C:0:G:72:T:0:N:0:O:1	A:0:C:0:G:185:T:1:N:0:O:0	6,29,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1288	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	368	38	20	0.0196078431372549	0.0	A:0:C:146:G:0:T:3:N:0:O:4	A:1:C:367:G:0:T:0:N:0:O:0	0,76,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	367	38	20	0.07272727272727272	0.0	A:0:C:100:G:0:T:8:N:0:O:2	A:1:C:366:G:0:T:0:N:0:O:0	0,48,8,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	179	38	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:87:N:0:O:5	A:0:C:0:G:0:T:179:N:0:O:0	0,52,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	1885	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	179	38	20	0.02608695652173913	0.0	A:0:C:3:G:0:T:112:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,57,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	186	38	20	0.05555555555555555	0.0	A:6:C:0:G:97:T:0:N:0:O:5	A:0:C:0:G:184:T:2:N:0:O:0	6,29,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	2235	G	A	G	16	ignore low frequency variant	Pass	False	False	True	183	334	38	20	0.02185792349726776	0.0	A:4:C:0:G:177:T:1:N:0:O:1	A:0:C:0:G:334:T:0:N:0:O:0	1,109,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	2236	T	G	T	16	ignore low frequency variant	Pass	False	False	True	197	332	38	20	0.02030456852791878	0.0	A:0:C:0:G:4:T:191:N:0:O:2	A:0:C:1:G:0:T:331:N:0:O:0	0,123,4,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	172	38	20	0.0234375	0.0	A:0:C:3:G:0:T:123:N:0:O:2	A:0:C:0:G:0:T:172:N:0:O:0	0,90,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	187	38	20	0.022900763358778626	0.0	A:3:C:0:G:128:T:0:N:0:O:0	A:0:C:0:G:187:T:0:N:0:O:0	3,62,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	2625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	187	38	20	0.030534351145038167	0.0053475935828877	A:4:C:0:G:127:T:0:N:0:O:0	A:1:C:0:G:186:T:0:N:0:O:0	4,61,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	188	38	20	0.024793388429752067	0.0	A:118:C:0:G:3:T:0:N:0:O:0	A:188:C:0:G:0:T:0:N:0:O:0	3,53,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	171	38	20	0.026785714285714284	0.0	A:0:C:108:G:0:T:3:N:0:O:1	A:0:C:171:G:0:T:0:N:0:O:0	0,101,3,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	176	38	20	0.023529411764705882	0.0	A:83:C:2:G:0:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	0,40,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	125	176	38	20	0.696	1.0	A:0:C:0:G:1:T:87:N:0:O:37	A:0:C:0:G:0:T:176:N:0:O:0	46,84,41,41	56.449	1456.7	yes	.	.	.	mixed position	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	176	38	20	0.04672897196261682	0.0	A:1:C:0:G:88:T:5:N:0:O:13	A:0:C:0:G:176:T:0:N:0:O:0	1,57,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	168	38	20	0.061855670103092786	0.0	A:0:C:6:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	0,53,6,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	168	38	20	0.023809523809523808	0.0	A:82:C:2:G:0:T:0:N:0:O:0	A:168:C:0:G:0:T:0:N:0:O:0	0,44,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	168	38	20	0.041666666666666664	0.0	A:0:C:88:G:0:T:4:N:0:O:4	A:0:C:168:G:0:T:0:N:0:O:0	0,43,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	168	38	20	0.02564102564102564	0.0	A:76:C:0:G:2:T:0:N:0:O:0	A:168:C:0:G:0:T:0:N:0:O:0	1,26,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3420	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	168	38	20	0.023255813953488372	0.0	A:3:C:0:G:0:T:108:N:0:O:18	A:0:C:0:G:0:T:168:N:0:O:0	1,51,2,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	187	38	20	0.05319148936170213	0.0	A:0:C:89:G:0:T:5:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	1,73,4,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	187	38	20	0.02531645569620253	0.0	A:2:C:0:G:77:T:0:N:0:O:0	A:0:C:0:G:187:T:0:N:0:O:0	2,43,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	186	38	20	0.02459016393442623	0.0	A:3:C:0:G:118:T:0:N:0:O:1	A:0:C:0:G:186:T:0:N:0:O:0	3,60,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	156	38	20	0.043010752688172046	0.0	A:4:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:154:T:2:N:0:O:0	0,55,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	156	38	20	0.024096385542168676	0.00641025641025641	A:0:C:81:G:0:T:2:N:0:O:0	A:0:C:155:G:0:T:1:N:0:O:0	0,55,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	3975	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	156	38	20	0.022222222222222223	0.0	A:129:C:0:G:3:T:0:N:0:O:3	A:156:C:0:G:0:T:0:N:0:O:0	3,61,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	156	38	20	0.02702702702702703	0.0	A:3:C:0:G:106:T:0:N:0:O:2	A:0:C:0:G:156:T:0:N:0:O:0	2,39,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	321	38	20	0.022727272727272728	0.0	A:0:C:126:G:0:T:3:N:0:O:3	A:0:C:321:G:0:T:0:N:0:O:0	0,74,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	193	38	20	0.02654867256637168	0.0	A:104:C:0:G:0:T:3:N:0:O:6	A:193:C:0:G:0:T:0:N:0:O:0	0,72,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	155	38	20	0.035211267605633804	0.0	A:0:C:0:G:137:T:5:N:0:O:0	A:0:C:0:G:155:T:0:N:0:O:0	5,79,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5028	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	183	38	20	0.019417475728155338	0.0	A:0:C:2:G:0:T:98:N:0:O:3	A:0:C:0:G:0:T:183:N:0:O:0	2,51,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	189	38	20	0.022222222222222223	0.0	A:88:C:0:G:0:T:2:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,26,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	189	38	20	0.021052631578947368	0.005291005291005291	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:188:G:0:T:1:N:0:O:0	2,32,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5262	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	188	38	20	0.027777777777777776	0.0	A:1:C:67:G:0:T:2:N:0:O:2	A:0:C:188:G:0:T:0:N:0:O:0	1,63,1,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5501	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	171	38	20	0.020618556701030927	0.0	A:94:C:0:G:2:T:0:N:0:O:1	A:171:C:0:G:0:T:0:N:0:O:0	1,44,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	172	38	20	0.02564102564102564	0.0	A:3:C:0:G:113:T:1:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	3,63,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	172	38	20	0.020202020202020204	0.0	A:2:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:172:T:0:N:0:O:0	2,61,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	183	38	20	0.09333333333333334	0.0	A:0:C:67:G:1:T:7:N:0:O:0	A:0:C:183:G:0:T:0:N:0:O:0	0,54,7,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	183	38	20	0.02564102564102564	0.0	A:0:C:2:G:0:T:74:N:0:O:2	A:0:C:0:G:0:T:183:N:0:O:0	0,42,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	183	38	20	0.03636363636363636	0.0	A:0:C:4:G:0:T:103:N:0:O:3	A:0:C:0:G:0:T:183:N:0:O:0	3,52,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5852	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	183	38	20	0.0196078431372549	0.0	A:98:C:0:G:0:T:2:N:0:O:2	A:183:C:0:G:0:T:0:N:0:O:0	2,47,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	166	38	20	0.024793388429752067	0.0	A:3:C:0:G:110:T:0:N:0:O:8	A:0:C:0:G:166:T:0:N:0:O:0	3,37,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	223	38	20	0.02531645569620253	0.0	A:0:C:77:G:0:T:2:N:0:O:0	A:0:C:223:G:0:T:0:N:0:O:0	0,58,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	122	38	20	0.024096385542168676	0.0	A:81:C:0:G:2:T:0:N:0:O:0	A:122:C:0:G:0:T:0:N:0:O:0	2,42,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	122	38	20	0.02608695652173913	0.0	A:0:C:112:G:0:T:3:N:0:O:0	A:0:C:122:G:0:T:0:N:0:O:0	0,61,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6427	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	122	38	20	0.038461538461538464	0.0	A:1:C:3:G:0:T:70:N:0:O:4	A:0:C:0:G:0:T:122:N:0:O:0	0,23,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	6565	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	176	38	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	2,42,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	177	38	20	0.03488372093023256	0.0	A:0:C:0:G:3:T:82:N:0:O:1	A:0:C:0:G:0:T:177:N:0:O:0	0,47,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	178	38	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	2,49,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6706	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	178	38	20	0.027522935779816515	0.0	A:0:C:101:G:0:T:3:N:0:O:5	A:0:C:178:G:0:T:0:N:0:O:0	2,62,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	177	38	20	0.037037037037037035	0.0	A:4:C:0:G:100:T:0:N:0:O:4	A:0:C:0:G:177:T:0:N:0:O:0	4,44,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	193	295	38	20	0.031088082901554404	0.003389830508474576	A:180:C:0:G:6:T:0:N:0:O:7	A:294:C:0:G:1:T:0:N:0:O:0	6,73,0,120	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	186	38	20	0.03125	0.0	A:0:C:93:G:0:T:3:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,56,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7030	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	184	38	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:91:N:0:O:5	A:0:C:0:G:0:T:184:N:0:O:0	1,49,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	185	38	20	0.05555555555555555	0.0	A:67:C:0:G:0:T:4:N:0:O:1	A:185:C:0:G:0:T:0:N:0:O:0	0,54,4,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	152	38	20	0.021505376344086023	0.0	A:87:C:0:G:2:T:1:N:0:O:3	A:152:C:0:G:0:T:0:N:0:O:0	2,43,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	152	38	20	0.022222222222222223	0.0	A:2:C:0:G:86:T:0:N:0:O:2	A:0:C:0:G:151:T:1:N:0:O:0	2,51,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	162	38	20	0.10666666666666667	0.0	A:8:C:0:G:65:T:1:N:0:O:1	A:0:C:0:G:162:T:0:N:0:O:0	8,18,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	162	38	20	0.02247191011235955	0.0	A:2:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:161:T:1:N:0:O:0	2,28,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	110	187	38	20	0.02727272727272727	0.0	A:106:C:3:G:0:T:0:N:0:O:1	A:187:C:0:G:0:T:0:N:0:O:0	3,37,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	7864	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	187	38	20	0.024	0.0	A:122:C:0:G:3:T:0:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	2,53,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	176	38	20	0.024793388429752067	0.0	A:3:C:0:G:116:T:0:N:0:O:2	A:0:C:0:G:175:T:1:N:0:O:0	3,60,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8182	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	176	38	20	0.023076923076923078	0.0	A:123:C:0:G:3:T:0:N:0:O:4	A:176:C:0:G:0:T:0:N:0:O:0	3,70,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	176	38	20	0.02158273381294964	0.0	A:0:C:0:G:134:T:3:N:0:O:2	A:0:C:0:G:175:T:0:N:0:O:1	3,73,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8321	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	185	38	20	0.019417475728155338	0.0	A:0:C:98:G:0:T:2:N:0:O:3	A:0:C:185:G:0:T:0:N:0:O:0	0,58,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	217	38	20	0.05	0.0	A:76:C:0:G:4:T:0:N:0:O:0	A:217:C:0:G:0:T:0:N:0:O:0	4,44,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	218	38	20	0.02586206896551724	0.0	A:3:C:0:G:107:T:0:N:0:O:6	A:0:C:0:G:218:T:0:N:0:O:0	3,55,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	194	38	20	0.043478260869565216	0.0	A:0:C:5:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,70,5,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8628	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	343	38	20	0.020833333333333332	0.0	A:137:C:0:G:3:T:3:N:0:O:1	A:343:C:0:G:0:T:0:N:0:O:0	1,63,2,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8854	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	181	38	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	0,47,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	181	38	20	0.05333333333333334	0.0	A:4:C:0:G:69:T:0:N:0:O:2	A:0:C:0:G:181:T:0:N:0:O:0	4,8,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	164	38	20	0.0425531914893617	0.0	A:4:C:0:G:0:T:84:N:0:O:6	A:0:C:0:G:0:T:164:N:0:O:0	4,32,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	164	38	20	0.024691358024691357	0.0	A:0:C:76:G:0:T:2:N:0:O:3	A:0:C:164:G:0:T:0:N:0:O:0	0,14,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	180	38	20	0.03	0.0	A:0:C:97:G:0:T:3:N:0:O:0	A:0:C:180:G:0:T:0:N:0:O:0	0,65,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	180	38	20	0.03787878787878788	0.0	A:0:C:0:G:126:T:5:N:0:O:1	A:0:C:0:G:180:T:0:N:0:O:0	0,68,5,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9509	A	G	A	16	ignore low frequency variant	Pass	False	False	True	195	297	38	20	0.020512820512820513	0.0	A:191:C:0:G:4:T:0:N:0:O:0	A:297:C:0:G:0:T:0:N:0:O:0	4,96,0,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	122	38	20	0.020618556701030927	0.0	A:0:C:129:G:0:T:4:N:0:O:61	A:0:C:121:G:0:T:0:N:0:O:1	3,156,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	120	38	20	0.02666666666666667	0.0	A:0:C:2:G:0:T:73:N:0:O:0	A:0:C:0:G:0:T:120:N:0:O:0	1,66,1,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	121	38	20	0.02727272727272727	0.0	A:0:C:106:G:0:T:3:N:0:O:1	A:0:C:121:G:0:T:0:N:0:O:0	0,82,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9714	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	121	38	20	0.0196078431372549	0.0	A:2:C:87:G:0:T:0:N:0:O:13	A:0:C:121:G:0:T:0:N:0:O:0	2,90,0,12	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	186	38	20	0.05263157894736842	0.0	A:3:C:0:G:54:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	3,13,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	186	38	20	0.04	0.0	A:0:C:69:G:0:T:3:N:0:O:3	A:0:C:186:G:0:T:0:N:0:O:0	3,22,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	138	38	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:138:T:0:N:0:O:0	2,21,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	162	38	20	0.039603960396039604	0.0	A:0:C:97:G:0:T:4:N:0:O:0	A:0:C:162:G:0:T:0:N:0:O:0	0,55,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	170	38	20	0.02654867256637168	0.0	A:0:C:0:G:110:T:3:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	3,55,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	203	38	20	0.031914893617021274	0.0	A:0:C:3:G:0:T:86:N:0:O:5	A:0:C:0:G:0:T:203:N:0:O:0	0,52,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	219	38	20	0.024390243902439025	0.0	A:0:C:80:G:0:T:2:N:0:O:0	A:0:C:219:G:0:T:0:N:0:O:0	0,52,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	217	38	20	0.03508771929824561	0.0	A:0:C:0:G:4:T:103:N:0:O:7	A:0:C:0:G:0:T:217:N:0:O:0	0,54,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	172	38	20	0.0392156862745098	0.0	A:0:C:0:G:4:T:98:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	3,63,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	73	172	38	20	0.0410958904109589	0.0	A:0:C:0:G:68:T:3:N:0:O:2	A:0:C:0:G:172:T:0:N:0:O:0	3,25,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	139	38	20	0.019801980198019802	0.0	A:96:C:0:G:0:T:2:N:0:O:3	A:139:C:0:G:0:T:0:N:0:O:0	2,73,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	204	185	38	20	0.0196078431372549	0.0	A:1:C:0:G:132:T:4:N:0:O:67	A:0:C:0:G:184:T:0:N:0:O:1	0,74,4,130	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	183	38	20	0.05333333333333334	0.0	A:69:C:0:G:4:T:1:N:0:O:1	A:183:C:0:G:0:T:0:N:0:O:0	0,50,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	12101	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	184	38	20	0.024193548387096774	0.0	A:0:C:3:G:0:T:121:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	1,56,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	175	38	20	0.017857142857142856	0.005714285714285714	A:2:C:0:G:86:T:0:N:0:O:24	A:1:C:0:G:172:T:2:N:0:O:0	0,87,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12383	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	175	38	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,70,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	175	38	20	0.019417475728155338	0.0	A:2:C:0:G:96:T:0:N:0:O:5	A:0:C:0:G:173:T:2:N:0:O:0	2,46,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	170	38	20	0.031578947368421054	0.0058823529411764705	A:3:C:91:G:0:T:0:N:0:O:1	A:1:C:169:G:0:T:0:N:0:O:0	0,58,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12527	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	170	38	20	0.023809523809523808	0.0	A:122:C:0:G:3:T:0:N:0:O:1	A:170:C:0:G:0:T:0:N:0:O:0	3,56,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12588	T	G	T	16	ignore low frequency variant	Pass	False	False	True	131	170	38	20	0.022900763358778626	0.0	A:0:C:0:G:3:T:128:N:0:O:0	A:0:C:0:G:0:T:170:N:0:O:0	3,62,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	170	38	20	0.06060606060606061	0.0	A:0:C:91:G:0:T:6:N:0:O:2	A:0:C:170:G:0:T:0:N:0:O:0	0,77,6,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	170	38	20	0.019230769230769232	0.0	A:95:C:0:G:2:T:1:N:0:O:6	A:170:C:0:G:0:T:0:N:0:O:0	2,29,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12847	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	170	38	20	0.019230769230769232	0.0	A:2:C:0:G:0:T:98:N:0:O:4	A:0:C:1:G:0:T:169:N:0:O:0	0,51,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	170	38	20	0.024793388429752067	0.0	A:3:C:0:G:115:T:0:N:0:O:3	A:0:C:0:G:170:T:0:N:0:O:0	3,31,0,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	170	38	20	0.028985507246376812	0.0	A:4:C:0:G:127:T:0:N:0:O:7	A:0:C:0:G:170:T:0:N:0:O:0	4,50,0,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	170	38	20	0.038834951456310676	0.0	A:0:C:99:G:0:T:4:N:0:O:0	A:1:C:169:G:0:T:0:N:0:O:0	0,50,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13124	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	157	38	20	0.024096385542168676	0.006369426751592357	A:0:C:0:G:80:T:2:N:0:O:1	A:0:C:0:G:156:T:1:N:0:O:0	1,46,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	144	157	38	20	0.020833333333333332	0.0	A:3:C:3:G:0:T:125:N:0:O:13	A:0:C:0:G:0:T:157:N:0:O:0	2,83,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	161	157	38	20	0.037267080745341616	0.0	A:6:C:0:G:147:T:0:N:0:O:8	A:0:C:0:G:157:T:0:N:0:O:0	6,65,0,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	157	38	20	0.043478260869565216	0.0	A:118:C:0:G:6:T:0:N:0:O:14	A:157:C:0:G:0:T:0:N:0:O:0	6,52,0,86	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13405	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	174	38	20	0.03389830508474576	0.0	A:0:C:114:G:0:T:4:N:0:O:0	A:0:C:174:G:0:T:0:N:0:O:0	1,68,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	174	38	20	0.04918032786885246	0.0	A:0:C:58:G:0:T:3:N:0:O:0	A:0:C:174:G:0:T:0:N:0:O:0	0,55,3,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	174	38	20	0.07	0.0	A:7:C:0:G:86:T:0:N:0:O:7	A:0:C:0:G:174:T:0:N:0:O:0	7,40,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	123	38	20	0.029850746268656716	0.0	A:4:C:0:G:123:T:0:N:0:O:7	A:0:C:0:G:122:T:0:N:0:O:1	4,63,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	123	38	20	0.022058823529411766	0.0	A:3:C:0:G:130:T:0:N:0:O:3	A:0:C:0:G:120:T:3:N:0:O:0	3,67,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	166	38	20	0.019417475728155338	0.0	A:0:C:2:G:0:T:97:N:0:O:4	A:0:C:0:G:0:T:166:N:0:O:0	2,32,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	13973	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	166	38	20	0.0196078431372549	0.0	A:0:C:2:G:0:T:96:N:0:O:4	A:0:C:0:G:0:T:166:N:0:O:0	2,33,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	200	38	20	0.02702702702702703	0.0	A:0:C:118:G:0:T:4:N:0:O:26	A:0:C:200:G:0:T:0:N:0:O:0	0,65,4,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	200	38	20	0.025210084033613446	0.0	A:0:C:116:G:0:T:3:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,62,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	94	200	38	20	1.0	1.0	A:0:C:0:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	48,48,46,46	327.867	1293.2	yes	.	.	.	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	200	38	20	0.02040816326530612	0.0	A:2:C:93:G:0:T:0:N:0:O:3	A:0:C:199:G:1:T:0:N:0:O:0	0,65,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	200	38	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:199:G:1:T:0:N:0:O:0	0,65,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14545	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	200	38	20	0.03773584905660377	0.0	A:102:C:0:G:0:T:4:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	4,39,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	187	38	20	0.026785714285714284	0.0	A:0:C:109:G:0:T:3:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	1,82,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14715	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	187	38	20	0.024	0.0	A:0:C:3:G:0:T:110:N:0:O:12	A:0:C:0:G:0:T:187:N:0:O:0	3,71,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	187	38	20	0.04938271604938271	0.0	A:77:C:0:G:0:T:4:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	4,41,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14729	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	187	38	20	0.03333333333333333	0.0	A:113:C:0:G:4:T:0:N:0:O:3	A:187:C:0:G:0:T:0:N:0:O:0	4,76,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	188	38	20	0.019736842105263157	0.0	A:0:C:128:G:0:T:3:N:0:O:21	A:0:C:187:G:0:T:0:N:0:O:1	0,94,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	15273	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	193	38	20	0.022900763358778626	0.0	A:3:C:127:G:0:T:0:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,81,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	165	38	20	0.08450704225352113	0.0	A:0:C:65:G:0:T:6:N:0:O:0	A:0:C:165:G:0:T:0:N:0:O:0	0,38,6,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	16179	A	C	A	16	ignore low frequency variant	Pass	False	False	True	232	323	38	20	0.02586206896551724	0.0	A:226:C:6:G:0:T:0:N:0:O:0	A:323:C:0:G:0:T:0:N:0:O:0	6,113,0,119	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	179	38	20	0.02608695652173913	0.0	A:112:C:0:G:3:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	3,67,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	196	38	20	0.01834862385321101	0.0	A:0:C:0:G:2:T:98:N:0:O:9	A:0:C:0:G:0:T:196:N:0:O:0	1,27,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	198	38	20	0.02857142857142857	0.005050505050505051	A:0:C:0:G:102:T:3:N:0:O:0	A:0:C:0:G:197:T:1:N:0:O:0	2,37,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	184	38	20	0.05319148936170213	0.0	A:5:C:0:G:83:T:0:N:0:O:6	A:0:C:0:G:183:T:1:N:0:O:0	5,15,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	185	38	20	0.021739130434782608	0.0	A:0:C:0:G:89:T:2:N:0:O:1	A:0:C:0:G:185:T:0:N:0:O:0	2,17,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	185	38	20	0.04040404040404041	0.0	A:0:C:0:G:4:T:94:N:0:O:1	A:0:C:0:G:0:T:185:N:0:O:0	0,53,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	185	38	20	0.03125	0.0	A:93:C:0:G:3:T:0:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	1,34,2,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	16848	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	185	38	20	0.03333333333333333	0.0	A:0:C:116:G:0:T:4:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	1,42,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	185	38	20	0.027777777777777776	0.0	A:70:C:2:G:0:T:0:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	2,32,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	169	341	38	20	0.023668639053254437	0.0	A:4:C:0:G:144:T:0:N:0:O:21	A:0:C:0:G:338:T:3:N:0:O:0	4,38,0,131	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17194	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	164	38	20	0.029411764705882353	0.0	A:65:C:0:G:2:T:0:N:0:O:1	A:164:C:0:G:0:T:0:N:0:O:0	2,19,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	164	38	20	0.025974025974025976	0.0	A:70:C:0:G:2:T:0:N:0:O:5	A:164:C:0:G:0:T:0:N:0:O:0	2,25,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	164	38	20	0.03	0.0	A:96:C:0:G:3:T:0:N:0:O:1	A:164:C:0:G:0:T:0:N:0:O:0	3,57,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	172	38	20	0.025974025974025976	0.0	A:0:C:72:G:0:T:2:N:0:O:3	A:0:C:172:G:0:T:0:N:0:O:0	0,44,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	17488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	172	38	20	0.02142857142857143	0.0	A:3:C:0:G:133:T:0:N:0:O:4	A:0:C:0:G:171:T:1:N:0:O:0	3,47,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17552	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	172	38	20	0.056179775280898875	0.0	A:5:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:170:T:2:N:0:O:0	0,43,5,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	172	38	20	0.02586206896551724	0.0	A:3:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	3,31,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	172	38	20	0.034482758620689655	0.0	A:0:C:83:G:0:T:3:N:0:O:1	A:0:C:172:G:0:T:0:N:0:O:0	0,42,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	172	38	20	0.03225806451612903	0.0	A:88:C:0:G:0:T:3:N:0:O:2	A:172:C:0:G:0:T:0:N:0:O:0	0,46,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17667	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	172	38	20	0.030303030303030304	0.0	A:3:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:172:T:0:N:0:O:0	3,44,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17704	A	G	A	16	ignore low frequency variant	Pass	False	False	True	200	343	38	20	0.025	0.0	A:190:C:0:G:5:T:0:N:0:O:5	A:343:C:0:G:0:T:0:N:0:O:0	5,59,0,141	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17705	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	343	38	20	0.026041666666666668	0.0	A:5:C:0:G:186:T:0:N:0:O:1	A:0:C:0:G:343:T:0:N:0:O:0	5,61,0,131	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	181	38	20	0.019801980198019802	0.0	A:95:C:0:G:2:T:0:N:0:O:4	A:181:C:0:G:0:T:0:N:0:O:0	2,36,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	181	38	20	0.022727272727272728	0.0055248618784530384	A:2:C:0:G:86:T:0:N:0:O:0	A:1:C:0:G:180:T:0:N:0:O:0	2,27,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	235	333	38	20	0.029787234042553193	0.0	A:7:C:0:G:228:T:0:N:0:O:0	A:0:C:0:G:333:T:0:N:0:O:0	6,92,1,143	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	177	320	38	20	0.022598870056497175	0.0	A:4:C:0:G:170:T:1:N:0:O:2	A:0:C:0:G:319:T:1:N:0:O:0	4,32,0,145	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	178	38	20	0.027777777777777776	0.0	A:0:C:140:G:0:T:4:N:0:O:0	A:1:C:177:G:0:T:0:N:0:O:0	0,88,4,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	209	38	20	0.04081632653061224	0.0	A:0:C:0:G:4:T:93:N:0:O:1	A:0:C:0:G:0:T:209:N:0:O:0	2,30,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	176	38	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	2,41,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	176	38	20	0.06557377049180328	0.0	A:4:C:0:G:56:T:0:N:0:O:1	A:0:C:0:G:176:T:0:N:0:O:0	4,20,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	18851	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	177	38	20	0.032	0.005649717514124294	A:4:C:0:G:120:T:0:N:0:O:1	A:1:C:0:G:176:T:0:N:0:O:0	2,73,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	181	38	20	0.020833333333333332	0.0	A:0:C:140:G:0:T:3:N:0:O:1	A:0:C:181:G:0:T:0:N:0:O:0	0,61,3,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	181	38	20	0.022058823529411766	0.0	A:3:C:0:G:128:T:0:N:0:O:5	A:0:C:0:G:181:T:0:N:0:O:0	3,29,0,107	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	349	38	20	0.04950495049504951	0.0	A:95:C:0:G:5:T:0:N:0:O:1	A:349:C:0:G:0:T:0:N:0:O:0	4,41,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	351	38	20	0.03125	0.002849002849002849	A:0:C:123:G:0:T:4:N:0:O:1	A:1:C:349:G:0:T:1:N:0:O:0	0,75,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	349	38	20	0.10666666666666667	0.0	A:0:C:67:G:0:T:8:N:0:O:0	A:0:C:349:G:0:T:0:N:0:O:0	0,57,8,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	19935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	197	38	20	0.027522935779816515	0.0	A:0:C:3:G:0:T:104:N:0:O:2	A:0:C:0:G:0:T:197:N:0:O:0	0,69,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	288	38	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:288:N:0:O:0	2,52,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	20181	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	185	38	20	0.027522935779816515	0.0	A:106:C:0:G:3:T:0:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	3,53,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	331	38	20	0.026455026455026454	0.0	A:5:C:0:G:181:T:0:N:0:O:3	A:0:C:0:G:330:T:1:N:0:O:0	5,74,0,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	184	38	20	0.024193548387096774	0.0	A:116:C:0:G:3:T:0:N:0:O:5	A:184:C:0:G:0:T:0:N:0:O:0	3,93,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	20680	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	184	38	20	0.03773584905660377	0.0	A:4:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:183:T:1:N:0:O:0	3,73,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	20686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	184	38	20	0.020833333333333332	0.0	A:2:C:0:G:91:T:2:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	2,70,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	20687	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	184	38	20	0.020618556701030927	0.0	A:1:C:92:G:0:T:2:N:0:O:2	A:0:C:184:G:0:T:0:N:0:O:0	0,72,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	182	38	20	0.025423728813559324	0.0	A:115:C:0:G:3:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	3,79,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	183	38	20	0.025	0.0	A:3:C:0:G:117:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	3,27,0,93	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	190	38	20	0.16279069767441862	0.005263157894736842	A:0:C:0:G:66:T:14:N:0:O:6	A:0:C:0:G:189:T:1:N:0:O:0	0,57,14,29	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	60	282	38	20	0.05	0.0	A:3:C:1:G:0:T:38:N:0:O:18	A:0:C:0:G:0:T:282:N:0:O:0	1,34,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	368	38	20	0.02097902097902098	0.0	A:0:C:126:G:0:T:3:N:0:O:14	A:3:C:365:G:0:T:0:N:0:O:0	0,88,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	183	38	20	0.024390243902439025	0.0	A:0:C:80:G:0:T:2:N:0:O:0	A:0:C:183:G:0:T:0:N:0:O:0	0,46,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	183	38	20	0.021505376344086023	0.0	A:91:C:0:G:0:T:2:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	1,26,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	183	38	20	0.041666666666666664	0.0	A:91:C:0:G:4:T:0:N:0:O:1	A:183:C:0:G:0:T:0:N:0:O:0	4,27,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	183	38	20	0.0423728813559322	0.0	A:5:C:0:G:111:T:0:N:0:O:2	A:0:C:0:G:181:T:2:N:0:O:0	5,42,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	168	38	20	0.16049382716049382	0.0	A:0:C:59:G:0:T:13:N:0:O:9	A:0:C:168:G:0:T:0:N:0:O:0	11,32,2,49	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	173	38	20	0.02857142857142857	0.0	A:0:C:95:G:0:T:3:N:0:O:7	A:0:C:173:G:0:T:0:N:0:O:0	0,82,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	173	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,77,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21794	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	173	38	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:173:C:0:G:0:T:0:N:0:O:0	2,43,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	21954	G	C	G	16	ignore low frequency variant	Pass	False	False	True	123	171	38	20	0.024390243902439025	0.0	A:0:C:3:G:119:T:0:N:0:O:1	A:0:C:0:G:171:T:0:N:0:O:0	1,77,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	139	185	38	20	0.02158273381294964	0.0	A:0:C:0:G:3:T:136:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	2,57,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	22494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	104	38	20	0.03896103896103896	0.0	A:3:C:0:G:70:T:0:N:0:O:4	A:0:C:0:G:103:T:1:N:0:O:0	1,29,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	68	99	38	20	0.029411764705882353	0.0	A:0:C:0:G:2:T:65:N:0:O:1	A:0:C:0:G:0:T:99:N:0:O:0	2,17,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	143	38	20	0.031007751937984496	0.0	A:4:C:0:G:124:T:0:N:0:O:1	A:0:C:0:G:143:T:0:N:0:O:0	4,45,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	143	38	20	0.032520325203252036	0.0	A:4:C:0:G:118:T:0:N:0:O:1	A:0:C:0:G:143:T:0:N:0:O:0	4,31,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	22864	A	G	A	16	ignore low frequency variant	Pass	False	False	True	291	280	38	20	0.024054982817869417	0.0	A:282:C:0:G:7:T:0:N:0:O:2	A:280:C:0:G:0:T:0:N:0:O:0	7,116,0,175	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	174	38	20	0.020689655172413793	0.0	A:0:C:0:G:141:T:3:N:0:O:1	A:0:C:0:G:174:T:0:N:0:O:0	2,84,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23039	C	G	C	16	ignore low frequency variant	Pass	False	False	True	177	174	38	20	0.02824858757062147	0.0	A:0:C:171:G:5:T:0:N:0:O:1	A:0:C:173:G:0:T:1:N:0:O:0	3,108,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	189	38	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	0,49,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	204	38	20	0.023809523809523808	0.0	A:121:C:0:G:3:T:0:N:0:O:2	A:204:C:0:G:0:T:0:N:0:O:0	3,58,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23401	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	204	38	20	0.022900763358778626	0.004901960784313725	A:1:C:0:G:127:T:3:N:0:O:0	A:0:C:0:G:203:T:1:N:0:O:0	2,70,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	137	204	38	20	0.9051094890510949	1.0	A:0:C:0:G:124:T:0:N:0:O:13	A:0:C:0:G:204:T:0:N:0:O:0	67,80,57,57	70.0	1646.2	yes	.	.	.	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	191	38	20	0.023809523809523808	0.0	A:3:C:0:G:114:T:0:N:0:O:9	A:0:C:0:G:191:T:0:N:0:O:0	3,86,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	191	38	20	0.03669724770642202	0.0	A:105:C:0:G:4:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	4,86,0,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	157	38	20	0.22727272727272727	0.0	A:0:C:68:G:0:T:20:N:0:O:0	A:0:C:157:G:0:T:0:N:0:O:0	0,52,20,36	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	157	38	20	0.036036036036036036	0.012738853503184714	A:0:C:4:G:0:T:107:N:0:O:0	A:0:C:2:G:0:T:155:N:0:O:0	0,58,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	154	157	38	20	0.032467532467532464	0.0	A:149:C:0:G:0:T:5:N:0:O:0	A:157:C:0:G:0:T:0:N:0:O:0	4,58,1,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	157	38	20	0.05319148936170213	0.0	A:5:C:1:G:0:T:87:N:0:O:1	A:0:C:1:G:0:T:156:N:0:O:0	4,13,1,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	157	38	20	0.08108108108108109	0.0	A:0:C:67:G:0:T:6:N:0:O:1	A:0:C:157:G:0:T:0:N:0:O:0	0,53,6,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24199	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	177	38	20	0.023809523809523808	0.0	A:2:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:177:T:0:N:0:O:0	2,20,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	177	38	20	0.07575757575757576	0.0	A:0:C:56:G:0:T:5:N:0:O:5	A:0:C:177:G:0:T:0:N:0:O:0	0,56,5,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	177	38	20	0.08108108108108109	0.0	A:9:C:0:G:101:T:0:N:0:O:1	A:0:C:0:G:176:T:1:N:0:O:0	9,28,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	177	38	20	0.0380952380952381	0.0	A:4:C:0:G:95:T:0:N:0:O:6	A:0:C:0:G:177:T:0:N:0:O:0	4,22,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24278	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	177	38	20	0.021052631578947368	0.0	A:2:C:0:G:1:T:92:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	2,14,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	188	38	20	0.024793388429752067	0.0	A:0:C:118:G:0:T:3:N:0:O:0	A:0:C:188:G:0:T:0:N:0:O:0	0,72,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24602	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	188	38	20	0.025423728813559324	0.0	A:111:C:0:G:3:T:0:N:0:O:4	A:188:C:0:G:0:T:0:N:0:O:0	3,64,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24603	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	188	38	20	0.023809523809523808	0.0	A:3:C:0:G:122:T:0:N:0:O:1	A:0:C:0:G:188:T:0:N:0:O:0	3,58,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24618	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	188	38	20	0.021739130434782608	0.0	A:3:C:0:G:134:T:0:N:0:O:1	A:0:C:0:G:188:T:0:N:0:O:0	3,71,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24661	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	188	38	20	0.023622047244094488	0.0	A:122:C:0:G:3:T:1:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:0	3,61,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24821	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	166	38	20	0.019417475728155338	0.0	A:2:C:0:G:95:T:0:N:0:O:6	A:0:C:0:G:166:T:0:N:0:O:0	2,71,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	166	38	20	0.02127659574468085	0.0	A:2:C:0:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:166:N:0:O:0	1,57,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25160	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	172	38	20	0.021897810218978103	0.0	A:0:C:133:G:0:T:3:N:0:O:1	A:0:C:172:G:0:T:0:N:0:O:0	0,79,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	114	172	38	20	0.03508771929824561	0.0	A:109:C:4:G:0:T:0:N:0:O:1	A:172:C:0:G:0:T:0:N:0:O:0	4,56,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	207	38	20	0.03296703296703297	0.0	A:0:C:3:G:0:T:86:N:0:O:2	A:0:C:0:G:0:T:207:N:0:O:0	0,36,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	207	38	20	0.05952380952380952	0.0	A:0:C:79:G:0:T:5:N:0:O:0	A:0:C:207:G:0:T:0:N:0:O:0	0,35,5,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25499	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	207	38	20	0.020618556701030927	0.004830917874396135	A:0:C:91:G:2:T:2:N:0:O:2	A:1:C:205:G:0:T:1:N:0:O:0	0,40,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	124	200	38	20	1.0	1.0	A:0:C:0:G:0:T:124:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	27,27,97,97	210.0	1855.8	yes	.	.	.	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	25688	C	A	C	16	ignore low frequency variant	Pass	False	False	True	119	184	38	20	0.03361344537815126	0.05434782608695652	A:4:C:115:G:0:T:0:N:0:O:0	A:10:C:174:G:0:T:0:N:0:O:0	3,62,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	185	38	20	0.036036036036036036	0.0	A:0:C:93:G:0:T:4:N:0:O:14	A:0:C:184:G:0:T:0:N:0:O:1	1,69,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	184	38	20	0.03571428571428571	0.0	A:3:C:0:G:80:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	3,29,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	184	38	20	0.030303030303030304	0.0	A:4:C:91:G:0:T:0:N:0:O:37	A:0:C:183:G:0:T:1:N:0:O:0	4,57,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	184	38	20	0.03225806451612903	0.0	A:82:C:0:G:0:T:3:N:0:O:8	A:184:C:0:G:0:T:0:N:0:O:0	0,77,3,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	184	38	20	0.02	0.0	A:0:C:97:G:0:T:2:N:0:O:1	A:1:C:183:G:0:T:0:N:0:O:0	2,60,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	184	38	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:183:T:1:N:0:O:0	3,45,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	322	38	20	0.023255813953488372	0.0	A:0:C:83:G:0:T:2:N:0:O:1	A:0:C:322:G:0:T:0:N:0:O:0	0,53,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	322	38	20	0.020618556701030927	0.003105590062111801	A:2:C:0:G:95:T:0:N:0:O:0	A:1:C:0:G:319:T:2:N:0:O:0	2,26,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26274	T	C	T	16	ignore low frequency variant	Pass	False	False	True	238	333	38	20	0.02100840336134454	0.0	A:1:C:5:G:0:T:230:N:0:O:2	A:0:C:0:G:0:T:333:N:0:O:0	0,129,5,109	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	177	38	20	0.03409090909090909	0.0	A:0:C:3:G:0:T:84:N:0:O:1	A:0:C:0:G:0:T:177:N:0:O:0	0,56,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	177	38	20	0.023255813953488372	0.0	A:0:C:122:G:0:T:3:N:0:O:4	A:0:C:177:G:0:T:0:N:0:O:0	0,77,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	177	38	20	0.022222222222222223	0.0	A:0:C:88:G:0:T:2:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	0,64,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	177	38	20	0.02824858757062147	0.0	A:0:C:115:G:0:T:5:N:0:O:57	A:1:C:176:G:0:T:0:N:0:O:0	0,106,5,71	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	177	38	20	0.07352941176470588	0.0	A:0:C:5:G:0:T:63:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,40,5,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26505	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	177	38	20	0.023622047244094488	0.0	A:0:C:0:G:124:T:3:N:0:O:0	A:0:C:0:G:177:T:0:N:0:O:0	1,71,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	177	38	20	0.03	0.005649717514124294	A:3:C:0:G:96:T:0:N:0:O:1	A:1:C:0:G:176:T:0:N:0:O:0	3,32,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	203	348	38	20	0.06403940886699508	0.0	A:0:C:189:G:0:T:13:N:0:O:1	A:1:C:347:G:0:T:0:N:0:O:0	0,166,13,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	229	353	38	20	0.048034934497816595	0.0	A:0:C:11:G:0:T:218:N:0:O:0	A:0:C:0:G:0:T:353:N:0:O:0	0,167,11,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26571	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	182	38	20	0.02877697841726619	0.0	A:0:C:128:G:0:T:4:N:0:O:7	A:1:C:180:G:0:T:0:N:0:O:1	0,78,4,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26608	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	182	38	20	0.03	0.0	A:3:C:2:G:0:T:91:N:0:O:4	A:0:C:4:G:0:T:178:N:0:O:0	3,43,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	182	38	20	0.1111111111111111	0.0	A:10:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:182:T:0:N:0:O:0	10,17,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	182	38	20	0.09174311926605505	0.005494505494505495	A:0:C:97:G:1:T:10:N:0:O:1	A:3:C:178:G:0:T:1:N:0:O:0	1,84,9,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	158	38	20	0.02666666666666667	0.0	A:2:C:0:G:72:T:0:N:0:O:1	A:0:C:0:G:158:T:0:N:0:O:0	2,13,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	158	38	20	0.04054054054054054	0.0	A:0:C:71:G:0:T:3:N:0:O:0	A:0:C:158:G:0:T:0:N:0:O:0	0,55,3,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	188	38	20	0.03529411764705882	0.0	A:80:C:0:G:3:T:0:N:0:O:2	A:188:C:0:G:0:T:0:N:0:O:0	3,34,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28400	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	167	38	20	0.023255813953488372	0.0	A:0:C:77:G:0:T:2:N:0:O:7	A:0:C:167:G:0:T:0:N:0:O:0	0,46,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	167	38	20	0.021739130434782608	0.0	A:89:C:0:G:0:T:2:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	2,11,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28444	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	173	38	20	0.024390243902439025	0.0	A:0:C:2:G:0:T:75:N:0:O:5	A:0:C:0:G:0:T:173:N:0:O:0	1,49,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	267	38	20	0.06818181818181818	0.0	A:6:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:266:T:1:N:0:O:0	0,58,6,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	267	38	20	0.023809523809523808	0.0	A:0:C:79:G:0:T:2:N:0:O:3	A:0:C:267:G:0:T:0:N:0:O:0	0,38,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	264	38	20	0.04878048780487805	0.05303030303030303	A:0:C:115:G:0:T:6:N:0:O:2	A:0:C:250:G:0:T:14:N:0:O:0	2,44,4,79	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	28725	C	T	C	16	ignore low frequency variant	Pass	False	False	True	248	327	38	20	0.03225806451612903	0.0	A:0:C:234:G:0:T:8:N:0:O:6	A:1:C:326:G:0:T:0:N:0:O:0	0,76,8,172	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	303	38	20	0.01904761904761905	0.0	A:0:C:96:G:0:T:2:N:0:O:7	A:1:C:302:G:0:T:0:N:0:O:0	0,19,2,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	307	38	20	0.02040816326530612	0.0	A:0:C:47:G:0:T:1:N:0:O:1	A:1:C:306:G:0:T:0:N:0:O:0	0,16,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	307	38	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:307:N:0:O:0	0,14,2,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	306	38	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:1:C:305:G:0:T:0:N:0:O:0	0,13,2,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	87	319	38	20	0.10344827586206896	0.0	A:0:C:76:G:0:T:9:N:0:O:2	A:1:C:318:G:0:T:0:N:0:O:0	0,75,9,12	.	205.3	no	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29131	T	G	T	16	ignore low frequency variant	Pass	False	False	True	135	276	38	20	0.022222222222222223	0.0	A:0:C:0:G:3:T:113:N:0:O:19	A:0:C:0:G:0:T:276:N:0:O:0	0,53,3,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	279	38	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:279:N:0:O:0	0,57,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	280	38	20	0.018018018018018018	0.0	A:2:C:1:G:94:T:0:N:0:O:14	A:0:C:0:G:279:T:0:N:0:O:1	1,30,1,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	244	38	20	0.028985507246376812	0.0	A:0:C:2:G:0:T:65:N:0:O:2	A:0:C:0:G:0:T:244:N:0:O:0	0,48,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	204	38	20	0.03896103896103896	0.004901960784313725	A:73:C:0:G:3:T:0:N:0:O:1	A:203:C:0:G:1:T:0:N:0:O:0	2,21,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	205	38	20	0.02962962962962963	0.0	A:4:C:0:G:129:T:0:N:0:O:2	A:0:C:0:G:205:T:0:N:0:O:0	3,46,1,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	205	38	20	0.03361344537815126	0.0	A:0:C:114:G:0:T:4:N:0:O:1	A:0:C:205:G:0:T:0:N:0:O:0	0,60,4,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	133	205	38	20	0.03759398496240601	0.0	A:125:C:5:G:0:T:0:N:0:O:3	A:205:C:0:G:0:T:0:N:0:O:0	0,56,5,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	29701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	182	38	20	0.041237113402061855	0.0	A:4:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:182:T:0:N:0:O:0	3,61,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00028	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00028	artic-pipeline	NB09	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	72	G	A	G	1	near depth threshold	Alarm	False	False	True	42	199	38	20	0.047619047619047616	0.0	A:2:C:0:G:39:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	2,30,0,12	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	73	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	199	38	20	0.0425531914893617	0.0	A:45:C:0:G:2:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	2,34,0,13	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	101	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	199	38	20	0.021739130434782608	0.0	A:1:C:0:G:44:T:0:N:0:O:1	A:0:C:0:G:199:T:0:N:0:O:0	1,38,0,8	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	167	G	A	G	1	near depth threshold	Alarm	False	False	True	30	213	38	20	0.03333333333333333	0.0	A:1:C:0:G:27:T:0:N:0:O:2	A:0:C:0:G:213:T:0:N:0:O:0	0,20,1,10	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	175	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	213	38	20	0.021739130434782608	0.0	A:1:C:0:G:0:T:45:N:0:O:0	A:0:C:0:G:0:T:213:N:0:O:0	1,40,0,6	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	188	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	213	38	20	0.020833333333333332	0.0	A:1:C:0:G:47:T:0:N:0:O:0	A:0:C:0:G:213:T:0:N:0:O:0	1,39,0,9	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	36	199	38	20	0.9444444444444444	1.0	A:0:C:0:G:0:T:34:N:0:O:2	A:0:C:0:G:0:T:199:N:0:O:0	26,28,8,8	69.237	1420.7	yes	depth near threshold	.	.	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	245	C	A	C	16	ignore low frequency variant	Pass	False	False	True	48	199	38	20	0.020833333333333332	0.005025125628140704	A:1:C:46:G:0:T:0:N:0:O:1	A:1:C:198:G:0:T:0:N:0:O:0	1,39,0,9	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	247	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	199	38	20	0.021739130434782608	0.0	A:1:C:0:G:45:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	1,37,0,9	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	300	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	199	38	20	0.02127659574468085	0.0	A:1:C:43:G:0:T:0:N:0:O:3	A:0:C:199:G:0:T:0:N:0:O:0	1,39,0,8	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	192	399	38	20	0.020833333333333332	0.0	A:0:C:0:G:186:T:4:N:0:O:2	A:0:C:0:G:399:T:0:N:0:O:0	1,109,3,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	171	399	38	20	0.04093567251461988	0.0	A:0:C:163:G:0:T:7:N:0:O:1	A:0:C:399:G:0:T:0:N:0:O:0	0,124,7,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	374	38	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:374:T:0:N:0:O:0	2,57,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	304	38	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:302:T:2:N:0:O:0	1,28,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	303	38	20	0.02127659574468085	0.0	A:0:C:90:G:0:T:2:N:0:O:2	A:0:C:303:G:0:T:0:N:0:O:0	0,43,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	303	38	20	0.022727272727272728	0.0	A:0:C:85:G:0:T:2:N:0:O:1	A:0:C:303:G:0:T:0:N:0:O:0	0,41,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	859	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	304	38	20	0.02040816326530612	0.0	A:0:C:0:G:2:T:93:N:0:O:3	A:0:C:0:G:0:T:304:N:0:O:0	0,48,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	293	38	20	0.024096385542168676	0.0	A:2:C:0:G:81:T:0:N:0:O:0	A:0:C:1:G:290:T:2:N:0:O:0	2,11,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	199	38	20	0.0297029702970297	0.0	A:0:C:91:G:0:T:3:N:0:O:7	A:0:C:199:G:0:T:0:N:0:O:0	0,55,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	200	38	20	0.02097902097902098	0.0	A:3:C:0:G:110:T:0:N:0:O:30	A:0:C:0:G:199:T:0:N:0:O:1	2,57,1,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	198	38	20	0.04597701149425287	0.0	A:83:C:0:G:4:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	2,41,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	199	38	20	0.019417475728155338	0.0	A:2:C:0:G:91:T:0:N:0:O:10	A:0:C:0:G:198:T:1:N:0:O:0	2,35,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	199	38	20	0.033707865168539325	0.0	A:3:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:198:T:1:N:0:O:0	3,25,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	325	38	20	0.07	0.0	A:0:C:92:G:0:T:7:N:0:O:1	A:3:C:322:G:0:T:0:N:0:O:0	0,47,7,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	317	38	20	0.026785714285714284	0.0	A:3:C:0:G:107:T:0:N:0:O:2	A:0:C:0:G:316:T:1:N:0:O:0	1,41,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1546	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	205	38	20	0.02586206896551724	0.0	A:1:C:3:G:0:T:108:N:0:O:4	A:0:C:0:G:0:T:205:N:0:O:0	0,42,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	197	38	20	0.024096385542168676	0.0	A:0:C:76:G:0:T:2:N:0:O:5	A:0:C:197:G:0:T:0:N:0:O:0	0,26,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1629	A	C	N	2	allele in negative control	Alarm	False	False	False	77	196	38	20	0.025974025974025976	0.0	A:72:C:2:G:0:T:0:N:0:O:3	A:196:C:0:G:0:T:0:N:0:O:0	0,42,2,35	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	197	38	20	0.03125	0.0	A:3:C:0:G:89:T:0:N:0:O:4	A:0:C:0:G:197:T:0:N:0:O:0	3,11,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1742	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	197	38	20	0.023255813953488372	0.0	A:3:C:0:G:124:T:0:N:0:O:2	A:0:C:0:G:197:T:0:N:0:O:0	3,47,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	197	38	20	0.03	0.0	A:0:C:3:G:0:T:95:N:0:O:2	A:0:C:0:G:0:T:197:N:0:O:0	0,49,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	1913	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	394	38	20	0.02072538860103627	0.0	A:0:C:189:G:0:T:4:N:0:O:0	A:2:C:392:G:0:T:0:N:0:O:0	1,86,3,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	2091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	199	38	20	0.09929078014184398	0.09547738693467336	A:0:C:125:G:0:T:14:N:0:O:2	A:0:C:180:G:0:T:19:N:0:O:0	4,63,10,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	2204	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	199	38	20	0.02702702702702703	0.005025125628140704	A:4:C:0:G:139:T:0:N:0:O:5	A:1:C:0:G:197:T:1:N:0:O:0	2,53,2,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	2304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	238	38	20	0.017857142857142856	0.0	A:91:C:0:G:0:T:2:N:0:O:19	A:238:C:0:G:0:T:0:N:0:O:0	0,74,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	121	239	38	20	1.0	0.99581589958159	A:0:C:0:G:0:T:121:N:0:O:0	A:0:C:0:G:0:T:238:N:0:O:1	48,48,73,73	69.237	1407.2	yes	.	.	.	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	194	38	20	0.03125	0.0	A:3:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	3,19,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	195	38	20	0.028368794326241134	0.0	A:137:C:0:G:4:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	4,60,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	195	38	20	0.03333333333333333	0.0	A:1:C:109:G:0:T:4:N:0:O:6	A:0:C:195:G:0:T:0:N:0:O:0	0,107,4,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	120	193	38	20	0.725	1.0	A:0:C:0:G:0:T:87:N:0:O:33	A:0:C:0:G:0:T:193:N:0:O:0	46,79,41,41	59.694	1416.2	yes	.	.	.	mixed position	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	193	38	20	0.07377049180327869	0.0	A:0:C:0:G:104:T:9:N:0:O:9	A:0:C:0:G:193:T:0:N:0:O:0	0,62,9,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	199	38	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,49,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	199	38	20	0.06	0.0	A:0:C:94:G:0:T:6:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	0,80,6,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	3774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	199	38	20	0.023529411764705882	0.0	A:2:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	2,48,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	74	190	38	20	0.02702702702702703	0.0	A:0:C:0:G:2:T:61:N:0:O:11	A:0:C:0:G:0:T:190:N:0:O:0	0,41,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	190	38	20	0.02702702702702703	0.0	A:3:C:0:G:107:T:0:N:0:O:1	A:0:C:0:G:190:T:0:N:0:O:0	0,88,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	3856	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	191	38	20	0.02040816326530612	0.0	A:2:C:0:G:93:T:0:N:0:O:3	A:0:C:0:G:190:T:0:N:0:O:1	1,60,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	123	190	38	20	0.024390243902439025	0.0	A:3:C:0:G:0:T:113:N:0:O:7	A:0:C:0:G:0:T:190:N:0:O:0	3,78,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	4104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	257	370	38	20	0.0311284046692607	0.002702702702702703	A:248:C:0:G:8:T:0:N:0:O:1	A:369:C:0:G:1:T:0:N:0:O:0	7,119,1,138	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	310	370	38	20	0.035483870967741936	0.0	A:11:C:0:G:262:T:0:N:0:O:37	A:0:C:0:G:369:T:1:N:0:O:0	11,168,0,142	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	202	38	20	0.04878048780487805	0.0	A:110:C:0:G:1:T:6:N:0:O:6	A:202:C:0:G:0:T:0:N:0:O:0	0,70,6,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	4486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	202	38	20	0.02040816326530612	0.0	A:2:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:201:T:1:N:0:O:0	2,42,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	194	38	20	0.027210884353741496	0.0	A:0:C:132:G:0:T:4:N:0:O:11	A:1:C:192:G:0:T:0:N:0:O:1	0,100,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	4948	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	192	38	20	0.022727272727272728	0.0	A:0:C:3:G:0:T:129:N:0:O:0	A:0:C:0:G:0:T:192:N:0:O:0	0,99,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	150	198	38	20	0.02	0.0	A:3:C:0:G:0:T:134:N:0:O:13	A:0:C:0:G:0:T:198:N:0:O:0	0,86,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	197	38	20	0.0423728813559322	0.0	A:5:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	0,59,5,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	197	38	20	0.03669724770642202	0.005076142131979695	A:4:C:0:G:105:T:0:N:0:O:0	A:1:C:0:G:194:T:2:N:0:O:0	0,49,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5622	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	198	38	20	0.019801980198019802	0.0	A:0:C:95:G:0:T:2:N:0:O:4	A:0:C:198:G:0:T:0:N:0:O:0	2,41,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	198	38	20	0.1038961038961039	0.0	A:0:C:69:G:0:T:8:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,60,8,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	197	38	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:94:N:0:O:1	A:0:C:0:G:0:T:197:N:0:O:0	2,50,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	198	38	20	0.024193548387096774	0.0	A:3:C:0:G:112:T:0:N:0:O:9	A:0:C:0:G:198:T:0:N:0:O:0	0,52,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	198	38	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	0,59,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	197	38	20	0.03759398496240601	0.0	A:5:C:0:G:121:T:0:N:0:O:7	A:0:C:0:G:196:T:1:N:0:O:0	5,58,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	197	38	20	0.026785714285714284	0.0	A:0:C:107:G:0:T:3:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	1,63,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	197	38	20	0.07142857142857142	0.0	A:0:C:78:G:0:T:6:N:0:O:0	A:1:C:196:G:0:T:0:N:0:O:0	0,67,6,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	197	38	20	0.02564102564102564	0.0	A:3:C:0:G:113:T:0:N:0:O:1	A:0:C:0:G:196:T:1:N:0:O:0	3,48,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	198	38	20	0.037037037037037035	0.0	A:0:C:4:G:0:T:96:N:0:O:8	A:0:C:0:G:0:T:198:N:0:O:0	4,42,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	186	38	20	0.03409090909090909	0.005376344086021506	A:0:C:84:G:1:T:3:N:0:O:0	A:1:C:184:G:0:T:1:N:0:O:0	0,48,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6534	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	200	38	20	0.023622047244094488	0.0	A:0:C:3:G:1:T:123:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	0,75,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	200	38	20	0.030303030303030304	0.0	A:0:C:96:G:0:T:3:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,69,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	200	38	20	0.02040816326530612	0.0	A:0:C:0:G:2:T:94:N:0:O:2	A:0:C:0:G:0:T:200:N:0:O:0	0,61,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	201	38	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:98:N:0:O:5	A:0:C:0:G:0:T:200:N:0:O:1	0,65,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	200	38	20	0.030612244897959183	0.0	A:3:C:0:G:93:T:0:N:0:O:2	A:0:C:0:G:200:T:0:N:0:O:0	3,40,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	203	396	38	20	0.029556650246305417	0.0025252525252525255	A:0:C:187:G:0:T:6:N:0:O:10	A:0:C:395:G:0:T:1:N:0:O:0	0,124,6,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	196	38	20	0.038461538461538464	0.00510204081632653	A:3:C:0:G:75:T:0:N:0:O:0	A:1:C:0:G:195:T:0:N:0:O:0	3,21,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	197	38	20	0.032	0.0	A:0:C:0:G:118:T:4:N:0:O:3	A:0:C:0:G:197:T:0:N:0:O:0	2,62,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	197	38	20	0.024096385542168676	0.0	A:81:C:0:G:0:T:2:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	0,63,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	173	38	20	0.0297029702970297	0.0	A:90:C:0:G:3:T:0:N:0:O:8	A:173:C:0:G:0:T:0:N:0:O:0	3,35,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	199	38	20	0.10752688172043011	0.0	A:10:C:0:G:79:T:1:N:0:O:3	A:0:C:0:G:198:T:1:N:0:O:0	10,29,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	199	38	20	0.020202020202020204	0.0	A:2:C:0:G:95:T:0:N:0:O:2	A:0:C:0:G:199:T:0:N:0:O:0	2,34,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	197	38	20	0.03278688524590164	0.0	A:0:C:56:G:0:T:2:N:0:O:3	A:0:C:197:G:0:T:0:N:0:O:0	0,35,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	7817	C	T	C	1	near depth threshold	Alarm	False	False	True	45	197	38	20	0.022222222222222223	0.0	A:0:C:44:G:0:T:1:N:0:O:0	A:1:C:196:G:0:T:0:N:0:O:0	0,40,1,5	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	110	200	38	20	0.02727272727272727	0.0	A:105:C:3:G:0:T:0:N:0:O:2	A:200:C:0:G:0:T:0:N:0:O:0	0,66,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	202	38	20	0.043478260869565216	0.0	A:0:C:5:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:202:N:0:O:0	0,61,5,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	8880	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	197	38	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	1,55,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	197	38	20	0.03278688524590164	0.0	A:2:C:0:G:59:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	2,5,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	198	38	20	0.0707070707070707	0.0	A:7:C:0:G:0:T:85:N:0:O:7	A:0:C:0:G:0:T:198:N:0:O:0	7,43,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	194	38	20	0.02702702702702703	0.0	A:0:C:106:G:0:T:3:N:0:O:2	A:0:C:194:G:0:T:0:N:0:O:0	0,59,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	194	38	20	0.0375	0.0	A:0:C:68:G:0:T:3:N:0:O:9	A:0:C:194:G:0:T:0:N:0:O:0	0,21,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	194	38	20	0.03125	0.0	A:0:C:0:G:124:T:4:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	0,60,4,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	177	38	20	0.027777777777777776	0.0	A:0:C:2:G:0:T:70:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	2,64,0,8	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	9666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	177	38	20	0.022556390977443608	0.0	A:0:C:122:G:0:T:3:N:0:O:8	A:0:C:177:G:0:T:0:N:0:O:0	0,110,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	9891	C	T	C	7	mixed illumina variant	Check	False	False	True	139	188	38	20	0.5107913669064749	0.4574468085106383	A:0:C:67:G:0:T:71:N:0:O:1	A:0:C:102:G:0:T:86:N:0:O:0	39,79,32,60	7.244	.	mixed	.	.	mismatch(m+s)	mixed position	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	188	38	20	0.04918032786885246	0.0	A:3:C:0:G:56:T:1:N:0:O:1	A:0:C:0:G:188:T:0:N:0:O:0	3,19,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	188	38	20	0.04878048780487805	0.0	A:0:C:69:G:0:T:4:N:0:O:9	A:0:C:188:G:0:T:0:N:0:O:0	4,32,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	10028	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	188	38	20	0.025423728813559324	0.0	A:114:C:0:G:3:T:0:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:0	3,55,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	189	38	20	0.041666666666666664	0.0	A:4:C:0:G:90:T:0:N:0:O:2	A:0:C:0:G:188:T:1:N:0:O:0	4,35,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	189	38	20	0.03225806451612903	0.0	A:3:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	3,32,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	198	38	20	0.03571428571428571	0.0	A:0:C:107:G:0:T:4:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,74,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	10474	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	198	38	20	0.025423728813559324	0.0	A:0:C:115:G:0:T:3:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	3,72,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	198	38	20	0.02830188679245283	0.0	A:103:C:0:G:3:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	3,49,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	201	38	20	0.024096385542168676	0.0	A:0:C:81:G:0:T:2:N:0:O:0	A:0:C:200:G:1:T:0:N:0:O:0	0,53,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	10936	T	G	N	2	allele in negative control	Alarm	False	False	False	105	200	38	20	0.02857142857142857	0.0	A:0:C:0:G:3:T:97:N:0:O:5	A:0:C:1:G:0:T:199:N:0:O:0	0,47,3,58	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	11104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	194	38	20	0.028037383177570093	0.0	A:0:C:3:G:0:T:104:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	2,85,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	196	38	20	0.021739130434782608	0.0	A:0:C:0:G:2:T:90:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	2,66,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	63	196	38	20	0.031746031746031744	0.0	A:0:C:0:G:60:T:2:N:0:O:1	A:0:C:0:G:196:T:0:N:0:O:0	2,31,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	11332	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	387	38	20	0.020833333333333332	0.002583979328165375	A:140:C:0:G:3:T:0:N:0:O:1	A:386:C:0:G:1:T:0:N:0:O:0	3,88,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	193	38	20	0.028846153846153848	0.0	A:99:C:0:G:0:T:3:N:0:O:2	A:193:C:0:G:0:T:0:N:0:O:0	3,79,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	193	38	20	0.07920792079207921	0.0	A:0:C:93:G:0:T:8:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,80,8,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	195	38	20	0.03278688524590164	0.0	A:59:C:0:G:2:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	0,44,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	197	38	20	0.04807692307692308	0.0	A:0:C:77:G:0:T:5:N:0:O:22	A:0:C:197:G:0:T:0:N:0:O:0	0,76,5,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	194	38	20	0.01904761904761905	0.0	A:2:C:0:G:78:T:0:N:0:O:25	A:0:C:0:G:194:T:0:N:0:O:0	1,92,1,13	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	194	38	20	0.023529411764705882	0.0	A:83:C:2:G:0:T:0:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	2,60,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.029411764705882353	0.0	A:95:C:0:G:3:T:0:N:0:O:4	A:194:C:0:G:0:T:0:N:0:O:0	3,49,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	194	38	20	0.033707865168539325	0.0	A:3:C:0:G:80:T:0:N:0:O:6	A:0:C:0:G:194:T:0:N:0:O:0	3,37,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12452	C	A	C	16	ignore low frequency variant	Pass	False	False	True	196	389	38	20	0.02040816326530612	0.0	A:4:C:190:G:0:T:0:N:0:O:2	A:0:C:389:G:0:T:0:N:0:O:0	0,114,4,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12453	C	T	C	16	ignore low frequency variant	Pass	False	False	True	205	389	38	20	0.024390243902439025	0.0	A:0:C:200:G:0:T:5:N:0:O:0	A:1:C:388:G:0:T:0:N:0:O:0	0,133,5,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12527	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	199	38	20	0.025	0.0	A:117:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,51,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	199	38	20	0.024691358024691357	0.0	A:76:C:0:G:2:T:2:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	1,29,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	199	38	20	0.060240963855421686	0.0	A:0:C:76:G:0:T:5:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	0,68,5,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12833	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	197	38	20	0.019801980198019802	0.0	A:2:C:0:G:96:T:0:N:0:O:3	A:0:C:0:G:196:T:1:N:0:O:0	2,47,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	197	38	20	0.038834951456310676	0.0	A:94:C:0:G:4:T:1:N:0:O:4	A:197:C:0:G:0:T:0:N:0:O:0	4,40,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	197	38	20	0.0297029702970297	0.0	A:0:C:98:G:0:T:3:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	1,46,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	197	38	20	0.0743801652892562	0.0	A:9:C:0:G:108:T:0:N:0:O:4	A:0:C:0:G:196:T:1:N:0:O:0	9,47,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	197	38	20	0.05660377358490566	0.0	A:94:C:0:G:6:T:0:N:0:O:6	A:197:C:0:G:0:T:0:N:0:O:0	6,39,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	197	38	20	0.031578947368421054	0.0	A:0:C:92:G:0:T:3:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,60,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	194	38	20	0.033707865168539325	0.0	A:0:C:83:G:0:T:3:N:0:O:3	A:1:C:193:G:0:T:0:N:0:O:0	0,45,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	191	38	20	0.10526315789473684	0.0	A:0:C:51:G:0:T:6:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,48,6,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	191	38	20	0.01834862385321101	0.0	A:2:C:0:G:97:T:0:N:0:O:10	A:0:C:0:G:191:T:0:N:0:O:0	2,41,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	192	38	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:192:G:0:T:0:N:0:O:0	0,55,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	192	38	20	0.020833333333333332	0.0	A:3:C:0:G:0:T:110:N:0:O:31	A:0:C:0:G:0:T:192:N:0:O:0	0,70,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	192	38	20	0.02054794520547945	0.0	A:3:C:0:G:122:T:0:N:0:O:21	A:0:C:0:G:192:T:0:N:0:O:0	3,72,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	192	38	20	0.02727272727272727	0.0	A:107:C:0:G:3:T:0:N:0:O:0	A:192:C:0:G:0:T:0:N:0:O:0	3,44,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	188	38	20	0.043478260869565216	0.0	A:5:C:0:G:109:T:0:N:0:O:1	A:0:C:0:G:187:T:1:N:0:O:0	5,36,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	197	38	20	0.02857142857142857	0.0	A:3:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	3,32,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	14315	A	T	A	16	ignore low frequency variant	Pass	False	False	True	129	202	38	20	0.023255813953488372	0.0	A:125:C:0:G:0:T:3:N:0:O:1	A:202:C:0:G:0:T:0:N:0:O:0	0,66,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	202	38	20	0.02608695652173913	0.0	A:0:C:111:G:0:T:3:N:0:O:1	A:1:C:201:G:0:T:0:N:0:O:0	0,71,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	110	202	38	20	0.9727272727272728	0.995049504950495	A:0:C:2:G:0:T:107:N:0:O:1	A:0:C:0:G:0:T:201:N:0:O:1	53,55,54,55	404.052	1357.8	yes	.	.	.	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	14433	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	201	38	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:201:C:0:G:0:T:0:N:0:O:0	2,51,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	197	38	20	0.042105263157894736	0.0	A:4:C:0:G:90:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	4,53,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	197	38	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	2,51,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.030303030303030304	0.0	A:95:C:0:G:3:T:0:N:0:O:1	A:197:C:0:G:0:T:0:N:0:O:0	3,71,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	190	38	20	0.020202020202020204	0.0	A:96:C:0:G:2:T:0:N:0:O:1	A:190:C:0:G:0:T:0:N:0:O:0	1,42,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	190	38	20	0.04672897196261682	0.0	A:5:C:0:G:101:T:0:N:0:O:1	A:0:C:0:G:190:T:0:N:0:O:0	5,37,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	190	38	20	0.0273972602739726	0.0	A:0:C:2:G:0:T:70:N:0:O:1	A:0:C:0:G:0:T:190:N:0:O:0	0,65,2,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15222	C	T	C	16	ignore low frequency variant	Pass	False	False	True	182	383	38	20	0.03296703296703297	0.0	A:0:C:166:G:0:T:6:N:0:O:10	A:0:C:383:G:0:T:0:N:0:O:0	0,151,6,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	15330	T	A	T	16	ignore low frequency variant	Pass	False	False	True	133	197	38	20	0.022556390977443608	0.0	A:3:C:0:G:0:T:127:N:0:O:3	A:0:C:0:G:0:T:197:N:0:O:0	0,74,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	198	38	20	0.022988505747126436	0.0	A:0:C:0:G:85:T:2:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	0,61,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15693	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	198	38	20	0.023809523809523808	0.0	A:123:C:0:G:3:T:0:N:0:O:0	A:197:C:0:G:0:T:1:N:0:O:0	3,69,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	196	38	20	0.019230769230769232	0.0	A:0:C:1:G:0:T:43:N:0:O:8	A:0:C:0:G:0:T:196:N:0:O:0	0,29,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	196	38	20	0.02	0.0	A:0:C:49:G:0:T:1:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,19,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	196	38	20	0.08695652173913043	0.0	A:0:C:63:G:0:T:6:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,40,6,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	197	38	20	0.043010752688172046	0.0	A:0:C:87:G:0:T:4:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	0,59,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	16268	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	196	38	20	0.02654867256637168	0.0	A:108:C:0:G:3:T:0:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	3,51,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16506	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	196	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:94:N:0:O:3	A:0:C:0:G:0:T:196:N:0:O:0	1,25,1,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	197	38	20	0.02608695652173913	0.0	A:0:C:0:G:109:T:3:N:0:O:3	A:0:C:0:G:197:T:0:N:0:O:0	2,46,1,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	211	38	20	0.03389830508474576	0.0	A:0:C:113:G:0:T:4:N:0:O:1	A:1:C:210:G:0:T:0:N:0:O:0	0,60,4,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	205	38	20	0.02912621359223301	0.0	A:3:C:0:G:97:T:0:N:0:O:3	A:0:C:0:G:204:T:1:N:0:O:0	3,20,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16822	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	195	38	20	0.02531645569620253	0.0	A:2:C:0:G:72:T:0:N:0:O:5	A:0:C:0:G:193:T:2:N:0:O:0	0,21,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16823	G	T	G	16	ignore low frequency variant	Pass	False	False	True	49	195	38	20	0.02040816326530612	0.0	A:0:C:0:G:45:T:1:N:0:O:3	A:0:C:0:G:195:T:0:N:0:O:0	0,14,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	195	38	20	0.01904761904761905	0.0	A:2:C:0:G:97:T:0:N:0:O:6	A:0:C:0:G:195:T:0:N:0:O:0	2,10,0,95	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	194	38	20	0.047619047619047616	0.0	A:0:C:0:G:4:T:80:N:0:O:0	A:0:C:2:G:0:T:192:N:0:O:0	0,31,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	195	38	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	0,14,2,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	195	38	20	0.02040816326530612	0.0	A:0:C:89:G:0:T:2:N:0:O:7	A:0:C:195:G:0:T:0:N:0:O:0	0,34,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	16950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	195	38	20	0.02702702702702703	0.0	A:0:C:2:G:0:T:72:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	0,27,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	195	38	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:194:T:1:N:0:O:0	2,8,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	195	38	20	0.021505376344086023	0.0	A:88:C:0:G:2:T:0:N:0:O:3	A:195:C:0:G:0:T:0:N:0:O:0	2,9,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	195	38	20	0.023529411764705882	0.0	A:2:C:0:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	2,9,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	198	38	20	0.0379746835443038	0.005050505050505051	A:0:C:76:G:0:T:3:N:0:O:0	A:0:C:197:G:0:T:1:N:0:O:0	0,59,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	17552	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	198	38	20	0.02247191011235955	0.0	A:2:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:197:T:1:N:0:O:0	0,53,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	198	38	20	0.03636363636363636	0.0	A:4:C:1:G:105:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	4,39,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	198	38	20	0.047058823529411764	0.0	A:0:C:81:G:0:T:4:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,53,4,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	198	38	20	0.02564102564102564	0.0	A:106:C:0:G:0:T:3:N:0:O:8	A:198:C:0:G:0:T:0:N:0:O:0	0,66,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	199	388	38	20	0.020100502512562814	0.0	A:0:C:187:G:0:T:4:N:0:O:8	A:1:C:386:G:0:T:0:N:0:O:1	0,123,4,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.030303030303030304	0.0	A:94:C:0:G:3:T:0:N:0:O:2	A:197:C:0:G:0:T:0:N:0:O:0	3,36,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	197	38	20	0.043478260869565216	0.0	A:4:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	4,32,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	198	38	20	0.04032258064516129	0.0	A:0:C:118:G:0:T:5:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,63,5,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	198	38	20	0.0273972602739726	0.0	A:0:C:141:G:0:T:4:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,83,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	258	38	20	0.034482758620689655	0.0	A:0:C:0:G:138:T:5:N:0:O:2	A:0:C:0:G:258:T:0:N:0:O:0	0,77,5,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	18634	G	T	G	16	ignore low frequency variant	Pass	False	False	True	229	388	38	20	0.021834061135371178	0.0	A:1:C:0:G:222:T:5:N:0:O:1	A:0:C:0:G:388:T:0:N:0:O:0	0,126,5,103	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	198	38	20	0.02197802197802198	0.0	A:88:C:0:G:2:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	2,36,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	198	38	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:196:T:2:N:0:O:0	2,35,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	198	38	20	0.02857142857142857	0.0	A:2:C:0:G:68:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	2,14,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	19332	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	266	38	20	0.02	0.0	A:0:C:0:G:2:T:97:N:0:O:1	A:0:C:0:G:0:T:266:N:0:O:0	0,39,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	19410	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	269	38	20	0.025	0.0	A:117:C:0:G:3:T:0:N:0:O:0	A:268:C:0:G:0:T:1:N:0:O:0	2,54,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	269	38	20	0.11428571428571428	0.0	A:0:C:60:G:0:T:8:N:0:O:2	A:0:C:269:G:0:T:0:N:0:O:0	0,51,8,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	19653	T	A	T	16	ignore low frequency variant	Pass	False	False	True	140	192	38	20	0.02142857142857143	0.0	A:3:C:0:G:0:T:131:N:0:O:6	A:0:C:0:G:0:T:192:N:0:O:0	3,82,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	192	38	20	0.030303030303030304	0.0	A:0:C:3:G:0:T:94:N:0:O:2	A:0:C:0:G:0:T:192:N:0:O:0	0,61,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	193	38	20	0.03	0.0	A:0:C:0:G:3:T:92:N:0:O:5	A:0:C:0:G:0:T:193:N:0:O:0	0,34,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	198	38	20	0.0196078431372549	0.0	A:0:C:97:G:0:T:2:N:0:O:3	A:0:C:198:G:0:T:0:N:0:O:0	0,50,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	20383	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	196	38	20	0.03508771929824561	0.0	A:4:C:0:G:110:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	4,53,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	194	38	20	0.020134228187919462	0.0	A:3:C:0:G:138:T:0:N:0:O:8	A:0:C:0:G:193:T:1:N:0:O:0	3,81,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	188	38	20	0.05084745762711865	0.0	A:6:C:0:G:112:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	6,33,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	191	38	20	0.13953488372093023	0.0	A:0:C:0:G:70:T:12:N:0:O:4	A:0:C:0:G:191:T:0:N:0:O:0	0,55,12,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	318	38	20	0.02830188679245283	0.0	A:3:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:318:T:0:N:0:O:0	3,35,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	388	38	20	0.020134228187919462	0.0	A:3:C:0:G:146:T:0:N:0:O:0	A:0:C:0:G:388:T:0:N:0:O:0	3,80,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	196	38	20	0.03333333333333333	0.0	A:0:C:87:G:0:T:3:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,60,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	196	38	20	0.02586206896551724	0.0	A:3:C:0:G:109:T:0:N:0:O:4	A:0:C:0:G:196:T:0:N:0:O:0	3,52,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	190	38	20	0.08860759493670886	0.0	A:0:C:69:G:0:T:7:N:0:O:3	A:0:C:190:G:0:T:0:N:0:O:0	7,28,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	126	192	38	20	0.015873015873015872	0.0	A:86:C:0:G:0:T:2:N:0:O:38	A:190:C:0:G:0:T:0:N:0:O:2	0,96,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	164	192	38	20	0.03048780487804878	0.0	A:159:C:0:G:0:T:5:N:0:O:0	A:192:C:0:G:0:T:0:N:0:O:0	4,67,1,97	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	22388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	125	38	20	0.023809523809523808	0.0	A:0:C:121:G:0:T:3:N:0:O:2	A:1:C:124:G:0:T:0:N:0:O:0	0,71,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	124	38	20	0.024691358024691357	0.0	A:0:C:0:G:2:T:78:N:0:O:1	A:0:C:0:G:0:T:124:N:0:O:0	2,17,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	195	272	38	20	0.020512820512820513	0.0	A:0:C:4:G:0:T:191:N:0:O:0	A:0:C:0:G:0:T:272:N:0:O:0	1,118,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	22647	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	186	38	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:114:N:0:O:1	A:0:C:0:G:0:T:186:N:0:O:0	0,71,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	186	38	20	0.025210084033613446	0.0	A:3:C:0:G:116:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	3,25,0,94	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	22922	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	198	38	20	0.020689655172413793	0.0	A:141:C:0:G:3:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	2,59,1,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	133	199	38	20	0.9323308270676691	1.0	A:0:C:0:G:124:T:0:N:0:O:9	A:0:C:0:G:199:T:0:N:0:O:0	77,86,47,47	339.694	1610.5	yes	.	.	.	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	23426	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	200	38	20	0.02608695652173913	0.0	A:0:C:0:G:112:T:3:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,73,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	198	38	20	0.022222222222222223	0.0	A:88:C:0:G:2:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	2,21,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	198	38	20	0.11827956989247312	0.0	A:0:C:82:G:0:T:11:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,64,11,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	198	38	20	0.05	0.005050505050505051	A:0:C:5:G:0:T:94:N:0:O:1	A:0:C:1:G:0:T:197:N:0:O:0	0,64,5,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	23897	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	198	38	20	0.018691588785046728	0.005050505050505051	A:2:C:96:G:0:T:1:N:0:O:8	A:1:C:197:G:0:T:0:N:0:O:0	2,64,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	198	38	20	0.028985507246376812	0.0	A:2:C:0:G:0:T:67:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	2,15,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	198	38	20	0.10869565217391304	0.0	A:10:C:0:G:81:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	10,19,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	198	38	20	0.043478260869565216	0.0	A:0:C:87:G:0:T:4:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,64,4,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	196	38	20	0.03773584905660377	0.0	A:4:C:0:G:101:T:0:N:0:O:1	A:0:C:0:G:195:T:1:N:0:O:0	4,25,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	201	38	20	0.028846153846153848	0.004975124378109453	A:3:C:100:G:0:T:1:N:0:O:0	A:1:C:200:G:0:T:0:N:0:O:0	3,52,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	201	38	20	0.02912621359223301	0.0	A:0:C:98:G:0:T:3:N:0:O:2	A:1:C:200:G:0:T:0:N:0:O:0	0,69,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	199	38	20	0.04195804195804196	0.0	A:6:C:0:G:119:T:0:N:0:O:18	A:0:C:0:G:197:T:1:N:0:O:1	6,72,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	197	38	20	0.035398230088495575	0.0	A:109:C:0:G:4:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	4,47,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	198	38	20	0.020833333333333332	0.0	A:2:C:0:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	1,38,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	198	38	20	0.0234375	0.0	A:124:C:0:G:3:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	3,58,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	198	38	20	0.041666666666666664	0.0	A:4:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	0,53,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25499	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	198	38	20	0.031578947368421054	0.005050505050505051	A:0:C:92:G:0:T:3:N:0:O:0	A:1:C:196:G:0:T:1:N:0:O:0	0,44,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	197	38	20	0.021052631578947368	0.0	A:0:C:0:G:79:T:2:N:0:O:14	A:0:C:0:G:196:T:0:N:0:O:1	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	195	38	20	0.03296703296703297	0.0	A:0:C:0:G:3:T:87:N:0:O:1	A:0:C:0:G:0:T:195:N:0:O:0	3,28,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	116	198	38	20	1.0	1.0	A:0:C:0:G:0:T:116:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	37,37,79,79	490.0	1851.5	yes	.	.	.	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	25696	G	C	G	16	ignore low frequency variant	Pass	False	False	True	94	189	38	20	0.02127659574468085	0.0	A:0:C:2:G:91:T:0:N:0:O:1	A:0:C:0:G:188:T:1:N:0:O:0	2,51,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	189	38	20	0.05555555555555555	0.0	A:68:C:4:G:0:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	1,48,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	189	38	20	0.02857142857142857	0.0	A:0:C:101:G:0:T:3:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	0,85,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	189	38	20	0.028037383177570093	0.0	A:104:C:0:G:3:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	3,67,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	189	38	20	0.029850746268656716	0.0	A:65:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,32,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	189	38	20	0.029411764705882353	0.0	A:3:C:0:G:97:T:0:N:0:O:2	A:0:C:0:G:189:T:0:N:0:O:0	3,61,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26154	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	296	38	20	0.020202020202020204	0.0	A:90:C:0:G:2:T:0:N:0:O:7	A:295:C:0:G:0:T:0:N:0:O:1	2,47,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26233	G	T	T	13	new position validated by illumina	Pass	False	True	True	263	379	38	20	1.0	0.9973614775725593	A:0:C:0:G:0:T:263:N:0:O:0	A:0:C:1:G:0:T:378:N:0:O:0	152,152,111,111	140.0	1586.7	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	189	38	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:189:T:0:N:0:O:0	2,40,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	189	38	20	0.047058823529411764	0.0	A:4:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	4,28,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	384	38	20	0.07428571428571429	0.0	A:0:C:162:G:0:T:13:N:0:O:0	A:1:C:383:G:0:T:0:N:0:O:0	0,139,13,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	202	385	38	20	0.0594059405940594	0.0	A:0:C:12:G:0:T:190:N:0:O:0	A:0:C:0:G:0:T:385:N:0:O:0	0,147,12,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.020202020202020204	0.0	A:94:C:0:G:2:T:0:N:0:O:3	A:197:C:0:G:0:T:0:N:0:O:0	2,41,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	197	38	20	0.03333333333333333	0.005076142131979695	A:1:C:3:G:0:T:86:N:0:O:0	A:0:C:1:G:0:T:196:N:0:O:0	0,31,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26670	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	197	38	20	0.02127659574468085	0.0	A:89:C:0:G:0:T:2:N:0:O:3	A:197:C:0:G:0:T:0:N:0:O:0	0,54,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	197	38	20	0.05747126436781609	0.0	A:5:C:0:G:81:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	5,15,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.020202020202020204	0.0	A:0:C:93:G:0:T:2:N:0:O:4	A:1:C:196:G:0:T:0:N:0:O:0	0,71,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	186	38	20	0.02631578947368421	0.0	A:3:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	3,43,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26910	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	192	38	20	0.021052631578947368	0.005208333333333333	A:85:C:0:G:0:T:2:N:0:O:8	A:191:C:0:G:0:T:1:N:0:O:0	2,44,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	192	38	20	0.03260869565217391	0.0	A:0:C:88:G:0:T:3:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	3,24,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	192	38	20	0.017094017094017096	0.0	A:96:C:0:G:2:T:0:N:0:O:19	A:192:C:0:G:0:T:0:N:0:O:0	2,44,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	192	38	20	0.023529411764705882	0.0	A:2:C:0:G:82:T:0:N:0:O:1	A:0:C:0:G:192:T:0:N:0:O:0	2,24,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	192	38	20	0.09302325581395349	0.0	A:0:C:77:G:0:T:8:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	0,64,8,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	27205	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	195	38	20	0.024793388429752067	0.0	A:0:C:3:G:0:T:118:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	0,63,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	196	38	20	0.02912621359223301	0.0	A:99:C:0:G:3:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	3,40,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	201	38	20	0.02247191011235955	0.0	A:82:C:0:G:2:T:0:N:0:O:5	A:201:C:0:G:0:T:0:N:0:O:0	2,40,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	192	38	20	0.02631578947368421	0.0	A:2:C:0:G:0:T:72:N:0:O:2	A:0:C:0:G:0:T:190:N:0:O:2	0,27,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	193	38	20	0.021739130434782608	0.0	A:87:C:0:G:1:T:2:N:0:O:2	A:191:C:0:G:0:T:0:N:0:O:2	2,31,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	192	38	20	0.03614457831325301	0.0	A:0:C:80:G:0:T:3:N:0:O:0	A:0:C:192:G:0:T:0:N:0:O:0	0,52,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	193	38	20	0.02197802197802198	0.0	A:2:C:83:G:0:T:0:N:0:O:6	A:0:C:193:G:0:T:0:N:0:O:0	2,55,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	211	38	20	0.020618556701030927	0.0	A:0:C:93:G:0:T:2:N:0:O:2	A:0:C:211:G:0:T:0:N:0:O:0	0,28,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	211	38	20	0.02197802197802198	0.0	A:2:C:0:G:87:T:2:N:0:O:0	A:0:C:0:G:211:T:0:N:0:O:0	0,25,2,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	212	38	20	0.041666666666666664	0.0	A:4:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:211:T:1:N:0:O:0	0,61,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	212	38	20	0.02666666666666667	0.0	A:0:C:71:G:0:T:2:N:0:O:2	A:1:C:211:G:0:T:0:N:0:O:0	0,36,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	212	38	20	0.03418803418803419	0.0	A:0:C:109:G:0:T:4:N:0:O:4	A:0:C:212:G:0:T:0:N:0:O:0	0,60,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28676	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	213	38	20	0.02702702702702703	0.0	A:108:C:0:G:3:T:0:N:0:O:0	A:213:C:0:G:0:T:0:N:0:O:0	3,49,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	190	38	20	0.04504504504504504	0.0	A:106:C:0:G:5:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	5,35,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	317	38	20	0.034482758620689655	0.0	A:0:C:82:G:0:T:3:N:0:O:2	A:1:C:316:G:0:T:0:N:0:O:0	0,31,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	320	38	20	0.03389830508474576	0.0	A:0:C:55:G:0:T:2:N:0:O:2	A:0:C:320:G:0:T:0:N:0:O:0	0,28,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	320	38	20	0.02912621359223301	0.0	A:3:C:0:G:99:T:0:N:0:O:1	A:0:C:0:G:320:T:0:N:0:O:0	3,6,0,97	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	319	38	20	0.08	0.003134796238244514	A:0:C:62:G:0:T:6:N:0:O:7	A:0:C:318:G:0:T:1:N:0:O:0	0,20,6,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	380	38	20	0.0782608695652174	0.0	A:0:C:103:G:0:T:9:N:0:O:3	A:0:C:380:G:0:T:0:N:0:O:0	0,102,9,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29056	A	T	A	1	near depth threshold	Alarm	False	False	True	34	199	38	20	0.029411764705882353	0.0	A:33:C:0:G:0:T:1:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	1,1,0,33	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29109	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	211	38	20	0.0196078431372549	0.004739336492890996	A:2:C:96:G:0:T:0:N:0:O:4	A:1:C:210:G:0:T:0:N:0:O:0	2,41,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29170	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	211	38	20	0.020618556701030927	0.0	A:94:C:0:G:2:T:0:N:0:O:1	A:211:C:0:G:0:T:0:N:0:O:0	2,53,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	94	211	38	20	0.02127659574468085	0.0	A:0:C:92:G:2:T:0:N:0:O:0	A:0:C:211:G:0:T:0:N:0:O:0	1,50,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	92	211	38	20	0.021739130434782608	0.0	A:0:C:2:G:89:T:0:N:0:O:1	A:1:C:0:G:210:T:0:N:0:O:0	1,40,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	199	38	20	0.037383177570093455	0.0	A:4:C:0:G:91:T:0:N:0:O:12	A:0:C:0:G:198:T:1:N:0:O:0	4,27,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	104	207	38	20	0.019230769230769232	0.0	A:0:C:2:G:97:T:0:N:0:O:5	A:0:C:0:G:202:T:0:N:0:O:5	1,33,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00029	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00029	artic-pipeline	NB10	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	198	38	20	0.028169014084507043	0.0	A:0:C:68:G:0:T:2:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,32,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	100	C	G	C	16	ignore low frequency variant	Pass	False	False	True	68	198	38	20	0.014705882352941176	0.0	A:0:C:48:G:1:T:0:N:0:O:19	A:0:C:197:G:0:T:1:N:0:O:0	0,53,1,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	198	38	20	0.028985507246376812	0.0	A:2:C:0:G:65:T:0:N:0:O:2	A:0:C:0:G:198:T:0:N:0:O:0	2,9,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	198	38	20	0.02040816326530612	0.0	A:2:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	2,38,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	198	38	20	0.039473684210526314	0.0	A:3:C:0:G:0:T:67:N:0:O:6	A:0:C:0:G:0:T:198:N:0:O:0	3,18,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	89	389	38	20	1.0	1.0	A:89:C:0:G:0:T:0:N:0:O:0	A:389:C:0:G:0:T:0:N:0:O:0	36,36,53,53	70.0	2651.6	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	652	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	200	38	20	0.03278688524590164	0.0	A:109:C:0:G:4:T:0:N:0:O:9	A:200:C:0:G:0:T:0:N:0:O:0	4,68,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	654	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	200	38	20	0.034482758620689655	0.0	A:3:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,32,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	670	T	A	T	16	ignore low frequency variant	Pass	False	False	True	203	389	38	20	0.024630541871921183	0.0	A:5:C:0:G:0:T:198:N:0:O:0	A:0:C:0:G:0:T:389:N:0:O:0	5,88,0,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	717	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	192	38	20	0.02459016393442623	0.0	A:0:C:116:G:0:T:3:N:0:O:3	A:0:C:192:G:0:T:0:N:0:O:0	0,55,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	337	38	20	0.02608695652173913	0.0	A:112:C:0:G:3:T:0:N:0:O:0	A:337:C:0:G:0:T:0:N:0:O:0	3,49,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	831	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	338	38	20	0.020202020202020204	0.0	A:96:C:0:G:2:T:1:N:0:O:0	A:338:C:0:G:0:T:0:N:0:O:0	2,37,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	338	38	20	0.02247191011235955	0.0	A:2:C:0:G:80:T:0:N:0:O:7	A:0:C:0:G:338:T:0:N:0:O:0	2,30,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	191	38	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:88:N:0:O:1	A:0:C:0:G:0:T:191:N:0:O:0	0,62,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	196	38	20	0.01904761904761905	0.0	A:0:C:93:G:0:T:2:N:0:O:10	A:2:C:194:G:0:T:0:N:0:O:0	0,55,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	196	38	20	0.04938271604938271	0.0	A:4:C:0:G:75:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	4,31,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	195	388	38	20	0.02564102564102564	0.0	A:5:C:0:G:189:T:0:N:0:O:1	A:0:C:0:G:388:T:0:N:0:O:0	5,55,0,140	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	373	38	20	0.07368421052631578	0.0	A:0:C:88:G:0:T:7:N:0:O:0	A:0:C:373:G:0:T:0:N:0:O:0	0,27,7,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	371	38	20	0.034482758620689655	0.0	A:0:C:3:G:0:T:84:N:0:O:0	A:0:C:0:G:0:T:371:N:0:O:0	0,25,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	260	396	38	20	0.019230769230769232	0.0	A:0:C:245:G:0:T:5:N:0:O:10	A:0:C:396:G:0:T:0:N:0:O:0	0,78,5,182	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	1656	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	199	38	20	0.023809523809523808	0.0	A:0:C:3:G:0:T:123:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,53,3,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	199	38	20	0.0297029702970297	0.0	A:0:C:3:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	0,47,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	199	38	20	0.05084745762711865	0.0	A:56:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	1,19,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1885	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	199	38	20	0.020618556701030927	0.005025125628140704	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:1:G:0:T:198:N:0:O:0	0,44,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	1912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	391	38	20	0.020202020202020204	0.03580562659846547	A:0:C:192:G:0:T:4:N:0:O:2	A:0:C:377:G:0:T:14:N:0:O:0	4,80,0,118	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	2121	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	253	38	20	0.020618556701030927	0.0	A:0:C:92:G:0:T:2:N:0:O:3	A:0:C:253:G:0:T:0:N:0:O:0	0,47,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	199	38	20	0.043010752688172046	0.005025125628140704	A:4:C:0:G:88:T:0:N:0:O:1	A:1:C:0:G:198:T:0:N:0:O:0	4,17,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	347	38	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:347:T:0:N:0:O:0	1,52,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	197	38	20	0.023076923076923078	0.0	A:0:C:3:G:0:T:124:N:0:O:3	A:0:C:0:G:0:T:197:N:0:O:0	0,87,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	314	38	20	0.024390243902439025	0.0	A:120:C:0:G:3:T:0:N:0:O:0	A:314:C:0:G:0:T:0:N:0:O:0	3,48,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	68	197	38	20	0.029411764705882353	0.0	A:65:C:2:G:1:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	1,20,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	197	38	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,50,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3158	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	197	38	20	0.02197802197802198	0.0	A:88:C:0:G:2:T:0:N:0:O:1	A:197:C:0:G:0:T:0:N:0:O:0	1,50,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	230	393	38	20	0.9869565217391304	0.9974554707379135	A:0:C:1:G:0:T:227:N:0:O:2	A:1:C:0:G:0:T:392:N:0:O:0	57,59,170,171	401.175	798.2	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	199	38	20	0.12048192771084337	0.0	A:0:C:10:G:0:T:73:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,28,10,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	198	38	20	0.0375	0.0	A:77:C:0:G:3:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	0,21,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	198	38	20	0.0375	0.0	A:77:C:0:G:0:T:3:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	0,22,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	199	38	20	0.02666666666666667	0.0	A:0:C:71:G:0:T:2:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	0,18,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	198	38	20	0.11494252873563218	0.0	A:0:C:77:G:0:T:10:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,67,10,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3721	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	198	38	20	0.022727272727272728	0.0	A:0:C:3:G:0:T:129:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,73,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	197	38	20	0.0410958904109589	0.0	A:0:C:0:G:3:T:60:N:0:O:10	A:0:C:0:G:0:T:197:N:0:O:0	1,30,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.030303030303030304	0.0	A:3:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:196:T:1:N:0:O:0	0,66,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	197	38	20	0.028169014084507043	0.0	A:0:C:69:G:0:T:2:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,56,2,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	197	38	20	0.0375	0.0	A:0:C:77:G:0:T:3:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,58,3,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	199	38	20	0.019230769230769232	0.0	A:0:C:45:G:0:T:1:N:0:O:6	A:0:C:199:G:0:T:0:N:0:O:0	0,35,1,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	113	200	38	20	0.017699115044247787	0.0	A:2:C:0:G:0:T:88:N:0:O:23	A:0:C:0:G:0:T:199:N:0:O:1	1,48,1,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	401	38	20	0.030612244897959183	0.0	A:6:C:1:G:188:T:0:N:0:O:1	A:0:C:0:G:400:T:1:N:0:O:0	0,80,6,116	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	401	38	20	0.025806451612903226	0.0024937655860349127	A:0:C:143:G:1:T:4:N:0:O:7	A:0:C:400:G:0:T:1:N:0:O:0	0,67,4,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	4875	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	200	38	20	0.020689655172413793	0.0	A:142:C:0:G:3:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	2,47,1,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	199	38	20	0.023622047244094488	0.0	A:0:C:0:G:3:T:121:N:0:O:3	A:0:C:0:G:0:T:199:N:0:O:0	0,57,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	202	38	20	0.025974025974025976	0.0	A:0:C:133:G:0:T:4:N:0:O:17	A:0:C:200:G:0:T:0:N:0:O:2	0,59,4,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	5145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	200	38	20	0.02	0.0	A:0:C:2:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:200:N:0:O:0	1,47,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	199	38	20	0.02040816326530612	0.0	A:2:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	2,41,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	277	38	20	0.04	0.0	A:0:C:71:G:0:T:3:N:0:O:1	A:0:C:277:G:0:T:0:N:0:O:0	0,64,3,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	5824	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	277	38	20	0.02	0.0	A:0:C:2:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:277:N:0:O:0	2,58,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	273	38	20	0.03260869565217391	0.0	A:0:C:75:G:0:T:3:N:0:O:14	A:2:C:271:G:0:T:0:N:0:O:0	0,66,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	134	272	38	20	0.9328358208955224	1.0	A:0:C:2:G:1:T:125:N:0:O:6	A:0:C:0:G:0:T:272:N:0:O:0	45,53,80,81	69.237	1129.7	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	274	38	20	0.1518987341772152	0.0	A:0:C:67:G:0:T:12:N:0:O:0	A:0:C:274:G:0:T:0:N:0:O:0	0,51,12,28	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	197	38	20	0.07446808510638298	0.005076142131979695	A:1:C:85:G:1:T:7:N:0:O:0	A:0:C:196:G:0:T:1:N:0:O:0	0,48,7,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	197	38	20	0.037383177570093455	0.0	A:0:C:4:G:0:T:103:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,50,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6386	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,50,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	280	38	20	0.025	0.0	A:0:C:116:G:0:T:3:N:0:O:1	A:0:C:280:G:0:T:0:N:0:O:0	0,72,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	270	38	20	0.01932367149758454	0.0	A:0:C:185:G:0:T:4:N:0:O:18	A:0:C:270:G:0:T:0:N:0:O:0	0,121,4,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	220	267	38	20	0.022727272727272728	0.0	A:213:C:0:G:5:T:0:N:0:O:2	A:267:C:0:G:0:T:0:N:0:O:0	5,82,0,138	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	242	38	20	0.03333333333333333	0.0	A:3:C:0:G:86:T:1:N:0:O:0	A:0:C:0:G:242:T:0:N:0:O:0	3,25,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	7031	A	C	A	16	ignore low frequency variant	Pass	False	False	True	67	201	38	20	0.029850746268656716	0.0	A:65:C:2:G:0:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:1	0,48,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	63	201	38	20	0.06349206349206349	0.0	A:59:C:0:G:0:T:4:N:0:O:0	A:201:C:0:G:0:T:0:N:0:O:0	0,49,4,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	194	38	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	2,52,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	7399	A	C	A	16	ignore low frequency variant	Pass	False	False	True	116	198	38	20	0.034482758620689655	0.0	A:111:C:4:G:0:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	4,53,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	198	38	20	0.056179775280898875	0.0	A:5:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:197:T:1:N:0:O:0	5,21,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	7615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	198	38	20	0.03409090909090909	0.0	A:3:C:0:G:83:T:0:N:0:O:2	A:0:C:0:G:197:T:1:N:0:O:0	0,61,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	199	38	20	0.032520325203252036	0.0	A:119:C:0:G:0:T:4:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	3,46,1,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	199	38	20	0.052083333333333336	0.0	A:0:C:5:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,54,5,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	197	38	20	0.03296703296703297	0.0	A:88:C:3:G:0:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	0,51,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	197	38	20	0.02564102564102564	0.0	A:0:C:3:G:0:T:114:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,55,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	197	38	20	0.020689655172413793	0.0	A:0:C:0:G:133:T:3:N:0:O:9	A:0:C:0:G:197:T:0:N:0:O:0	3,70,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	228	38	20	0.05263157894736842	0.0	A:72:C:0:G:4:T:0:N:0:O:0	A:228:C:0:G:0:T:0:N:0:O:0	4,32,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	231	38	20	0.034782608695652174	0.0	A:4:C:0:G:106:T:0:N:0:O:5	A:0:C:0:G:231:T:0:N:0:O:0	4,41,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	232	38	20	0.02564102564102564	0.0	A:114:C:0:G:3:T:0:N:0:O:0	A:232:C:0:G:0:T:0:N:0:O:0	3,47,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	260	38	20	0.025423728813559324	0.0	A:0:C:112:G:0:T:3:N:0:O:3	A:0:C:260:G:0:T:0:N:0:O:0	0,74,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	129	260	38	20	1.0	1.0	A:0:C:0:G:0:T:129:N:0:O:0	A:0:C:0:G:0:T:260:N:0:O:0	63,63,66,66	194.494	1184.5	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	233	38	20	0.034482758620689655	0.0	A:2:C:0:G:55:T:0:N:0:O:1	A:0:C:0:G:233:T:0:N:0:O:0	2,7,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	195	38	20	0.03418803418803419	0.0	A:4:C:0:G:0:T:104:N:0:O:9	A:0:C:0:G:0:T:195:N:0:O:0	4,65,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	198	38	20	0.041666666666666664	0.010101010101010102	A:0:C:0:G:114:T:5:N:0:O:1	A:0:C:0:G:196:T:2:N:0:O:0	0,52,5,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	9457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	198	38	20	0.022727272727272728	0.005050505050505051	A:0:C:3:G:0:T:128:N:0:O:1	A:0:C:1:G:0:T:197:N:0:O:0	0,49,3,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10147	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	188	38	20	0.03305785123966942	0.0	A:4:C:0:G:116:T:0:N:0:O:1	A:0:C:0:G:188:T:0:N:0:O:0	4,52,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	106	188	38	20	0.02830188679245283	0.0	A:3:C:1:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:188:N:0:O:0	0,55,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	188	38	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	1,21,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	218	376	38	20	0.027522935779816515	0.0	A:6:C:0:G:211:T:1:N:0:O:0	A:0:C:0:G:376:T:0:N:0:O:0	6,51,0,167	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	193	38	20	0.0594059405940594	0.0	A:0:C:95:G:0:T:6:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,31,6,70	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	279	38	20	0.024	0.0	A:121:C:0:G:3:T:0:N:0:O:1	A:279:C:0:G:0:T:0:N:0:O:0	3,19,0,106	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10599	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	278	38	20	0.023622047244094488	0.0	A:124:C:0:G:3:T:0:N:0:O:0	A:278:C:0:G:0:T:0:N:0:O:0	0,31,3,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	206	387	38	20	0.03398058252427184	0.0	A:0:C:7:G:0:T:195:N:0:O:4	A:0:C:0:G:0:T:387:N:0:O:0	0,92,7,114	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	258	38	20	0.03260869565217391	0.0	A:0:C:88:G:0:T:3:N:0:O:1	A:0:C:258:G:0:T:0:N:0:O:0	0,65,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	10946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	255	38	20	0.019801980198019802	0.0	A:98:C:0:G:2:T:0:N:0:O:1	A:255:C:0:G:0:T:0:N:0:O:0	2,44,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11053	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	195	38	20	0.024793388429752067	0.0	A:3:C:0:G:115:T:0:N:0:O:3	A:0:C:0:G:195:T:0:N:0:O:0	3,67,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11079	T	G	T	1	near depth threshold	Alarm	False	False	True	32	184	38	20	0.03125	0.0	A:0:C:0:G:1:T:31:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	1,13,0,19	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11081	T	A	T	1	near depth threshold	Alarm	False	False	True	33	184	38	20	0.030303030303030304	0.0	A:1:C:0:G:0:T:31:N:0:O:1	A:0:C:0:G:0:T:184:N:0:O:0	1,13,0,20	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	195	38	20	0.021052631578947368	0.0	A:0:C:0:G:2:T:91:N:0:O:2	A:0:C:0:G:0:T:195:N:0:O:0	1,51,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	61	195	38	20	0.06557377049180328	0.0	A:0:C:0:G:57:T:4:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	4,19,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11384	A	G	A	1	near depth threshold	Alarm	False	False	True	43	192	38	20	0.023255813953488372	0.0	A:41:C:0:G:1:T:0:N:0:O:1	A:192:C:0:G:0:T:0:N:0:O:0	1,26,0,17	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11400	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	210	38	20	0.02040816326530612	0.0	A:1:C:0:G:0:T:48:N:0:O:0	A:0:C:0:G:0:T:210:N:0:O:0	0,26,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11468	G	C	G	16	ignore low frequency variant	Pass	False	False	True	51	213	38	20	0.0196078431372549	0.0	A:0:C:1:G:49:T:0:N:0:O:1	A:0:C:0:G:213:T:0:N:0:O:0	0,25,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	213	38	20	0.020833333333333332	0.0	A:1:C:0:G:47:T:0:N:0:O:0	A:0:C:0:G:212:T:1:N:0:O:0	1,22,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	11566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	212	38	20	0.021739130434782608	0.0	A:0:C:1:G:0:T:45:N:0:O:0	A:0:C:0:G:0:T:212:N:0:O:0	0,32,1,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11669	C	T	C	1	near depth threshold	Alarm	False	False	True	40	195	38	20	0.05	0.0	A:0:C:37:G:0:T:2:N:0:O:1	A:3:C:192:G:0:T:0:N:0:O:0	0,33,2,7	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11689	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	196	38	20	0.02127659574468085	0.0	A:0:C:0:G:1:T:46:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,36,1,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11731	T	A	T	1	near depth threshold	Alarm	False	False	True	45	196	38	20	0.022222222222222223	0.0	A:1:C:0:G:0:T:42:N:0:O:2	A:0:C:0:G:0:T:196:N:0:O:0	1,18,0,27	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11733	T	A	T	1	near depth threshold	Alarm	False	False	True	37	196	38	20	0.02702702702702703	0.0	A:1:C:0:G:0:T:36:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	1,14,0,23	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11749	A	T	A	1	near depth threshold	Alarm	False	False	True	44	196	38	20	0.045454545454545456	0.0	A:42:C:0:G:0:T:2:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,20,0,24	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11815	A	C	A	1	near depth threshold	Alarm	False	False	True	42	196	38	20	0.023809523809523808	0.0	A:41:C:1:G:0:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	0,16,1,26	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11818	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	196	38	20	0.021739130434782608	0.0	A:1:C:0:G:0:T:45:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,27,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11838	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	196	38	20	0.0196078431372549	0.0	A:0:C:1:G:0:T:49:N:0:O:1	A:0:C:0:G:0:T:196:N:0:O:0	1,33,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11862	A	G	A	1	near depth threshold	Alarm	False	False	True	41	196	38	20	0.024390243902439025	0.01020408163265306	A:40:C:0:G:1:T:0:N:0:O:0	A:194:C:0:G:2:T:0:N:0:O:0	1,25,0,16	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	201	196	38	20	0.01990049751243781	0.015306122448979591	A:1:C:0:G:129:T:4:N:0:O:67	A:0:C:0:G:193:T:3:N:0:O:0	0,55,4,146	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	196	38	20	0.047619047619047616	0.0	A:60:C:0:G:3:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	0,29,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	11996	A	T	A	16	ignore low frequency variant	Pass	False	False	True	67	196	38	20	0.029850746268656716	0.0	A:65:C:0:G:0:T:2:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	0,31,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	197	38	20	0.037383177570093455	0.0	A:4:C:0:G:76:T:0:N:0:O:27	A:0:C:0:G:197:T:0:N:0:O:0	1,87,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	197	38	20	0.02586206896551724	0.0	A:108:C:0:G:3:T:0:N:0:O:5	A:197:C:0:G:0:T:0:N:0:O:0	3,54,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	197	38	20	0.03125	0.0	A:3:C:0:G:89:T:0:N:0:O:4	A:0:C:0:G:197:T:0:N:0:O:0	3,38,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	200	394	38	20	0.02	0.0	A:0:C:0:G:4:T:196:N:0:O:0	A:0:C:1:G:0:T:393:N:0:O:0	0,123,4,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12478	G	A	A	13	new position validated by illumina	Pass	False	True	True	131	199	38	20	0.9770992366412213	1.0	A:128:C:0:G:0:T:0:N:0:O:3	A:199:C:0:G:0:T:0:N:0:O:0	66,69,62,62	210.0	1113.1	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	199	38	20	0.0273972602739726	0.0	A:0:C:2:G:0:T:62:N:0:O:9	A:0:C:0:G:0:T:199:N:0:O:0	0,24,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	199	38	20	0.06382978723404255	0.0	A:0:C:87:G:0:T:6:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,68,6,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12772	A	G	A	16	ignore low frequency variant	Pass	False	False	True	183	393	38	20	0.0273224043715847	0.0	A:178:C:0:G:5:T:0:N:0:O:0	A:393:C:0:G:0:T:0:N:0:O:0	4,54,1,129	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12832	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	194	38	20	0.02459016393442623	0.0	A:3:C:0:G:119:T:0:N:0:O:0	A:0:C:0:G:193:T:1:N:0:O:0	3,48,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	194	38	20	0.026785714285714284	0.0	A:102:C:0:G:3:T:0:N:0:O:7	A:194:C:0:G:0:T:0:N:0:O:0	3,37,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	194	38	20	0.020202020202020204	0.0	A:1:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,48,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12938	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	194	38	20	0.02	0.0	A:2:C:0:G:94:T:0:N:0:O:4	A:0:C:0:G:194:T:0:N:0:O:0	2,37,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	194	38	20	0.06060606060606061	0.0	A:6:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	5,22,1,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	194	38	20	0.040983606557377046	0.0	A:5:C:0:G:113:T:0:N:0:O:4	A:0:C:0:G:193:T:1:N:0:O:0	4,41,1,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	194	38	20	0.049019607843137254	0.0	A:96:C:0:G:5:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	5,28,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	12975	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	194	38	20	0.024	0.0	A:0:C:3:G:0:T:119:N:0:O:3	A:0:C:0:G:0:T:194:N:0:O:0	1,58,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	194	38	20	0.028037383177570093	0.0	A:0:C:103:G:0:T:3:N:0:O:1	A:0:C:194:G:0:T:0:N:0:O:0	0,58,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	193	38	20	0.030534351145038167	0.0	A:4:C:0:G:0:T:119:N:0:O:8	A:0:C:0:G:0:T:193:N:0:O:0	3,78,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	193	38	20	0.02040816326530612	0.0	A:3:C:0:G:137:T:0:N:0:O:7	A:0:C:0:G:193:T:0:N:0:O:0	2,72,1,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13409	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	251	38	20	0.02197802197802198	0.0	A:88:C:0:G:2:T:0:N:0:O:1	A:251:C:0:G:0:T:0:N:0:O:0	1,39,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	253	38	20	0.027777777777777776	0.0	A:2:C:0:G:70:T:0:N:0:O:0	A:0:C:0:G:253:T:0:N:0:O:0	1,30,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	253	38	20	0.0784313725490196	0.0	A:0:C:47:G:0:T:4:N:0:O:0	A:0:C:253:G:0:T:0:N:0:O:0	0,44,4,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	253	38	20	0.046296296296296294	0.0	A:5:C:0:G:92:T:0:N:0:O:11	A:0:C:0:G:252:T:0:N:0:O:1	5,36,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	253	38	20	0.0410958904109589	0.0	A:0:C:70:G:0:T:3:N:0:O:0	A:2:C:250:G:0:T:0:N:0:O:1	0,41,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	253	38	20	0.029411764705882353	0.0	A:3:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:253:T:0:N:0:O:0	3,32,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	252	38	20	0.020202020202020204	0.003968253968253968	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:1:G:0:T:251:N:0:O:0	1,40,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	191	38	20	0.11578947368421053	0.0	A:11:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:190:T:1:N:0:O:0	11,54,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	189	38	20	0.022222222222222223	0.0	A:2:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	2,28,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	201	38	20	0.025	0.0	A:0:C:98:G:0:T:3:N:0:O:19	A:1:C:200:G:0:T:0:N:0:O:0	0,65,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14289	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	201	38	20	0.028846153846153848	0.0	A:0:C:0:G:3:T:101:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	0,64,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14375	A	C	A	16	ignore low frequency variant	Pass	False	False	True	118	201	38	20	0.025423728813559324	0.0	A:112:C:3:G:0:T:0:N:0:O:3	A:201:C:0:G:0:T:0:N:0:O:0	0,50,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	201	38	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	0,60,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14444	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	201	38	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:107:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	0,62,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14475	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	201	38	20	0.025	0.0	A:77:C:0:G:0:T:2:N:0:O:1	A:201:C:0:G:0:T:0:N:0:O:0	0,65,2,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	195	38	20	0.026785714285714284	0.0	A:0:C:108:G:0:T:3:N:0:O:1	A:0:C:195:G:0:T:0:N:0:O:0	0,80,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	196	38	20	0.030612244897959183	0.0	A:93:C:0:G:3:T:1:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	3,66,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14760	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	196	38	20	0.028846153846153848	0.0	A:0:C:99:G:0:T:3:N:0:O:2	A:1:C:195:G:0:T:0:N:0:O:0	1,83,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	14966	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	195	38	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	2,57,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	14967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	195	38	20	0.020833333333333332	0.0	A:2:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:194:T:1:N:0:O:0	2,54,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	15145	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	195	38	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	2,54,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	15146	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	195	38	20	0.027522935779816515	0.0	A:3:C:0:G:106:T:0:N:0:O:0	A:0:C:0:G:193:T:2:N:0:O:0	3,57,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	199	38	20	0.03773584905660377	0.0	A:0:C:101:G:0:T:4:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,68,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	15422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	199	38	20	0.020833333333333332	0.0	A:92:C:0:G:2:T:1:N:0:O:1	A:199:C:0:G:0:T:0:N:0:O:0	0,52,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	199	38	20	0.02830188679245283	0.0	A:103:C:0:G:3:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,67,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	15451	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	199	38	20	0.026785714285714284	0.0	A:3:C:0:G:107:T:0:N:0:O:2	A:0:C:0:G:198:T:1:N:0:O:0	3,50,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	199	38	20	0.11864406779661017	0.03015075376884422	A:0:C:51:G:0:T:7:N:0:O:1	A:0:C:193:G:0:T:6:N:0:O:0	1,32,6,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	15981	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	199	38	20	0.021897810218978103	0.0	A:0:C:128:G:0:T:3:N:0:O:6	A:0:C:199:G:0:T:0:N:0:O:0	0,60,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	199	38	20	0.021052631578947368	0.0	A:0:C:91:G:0:T:2:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	0,56,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	16209	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	197	38	20	0.02564102564102564	0.005076142131979695	A:0:C:3:G:0:T:112:N:0:O:2	A:0:C:1:G:0:T:196:N:0:O:0	0,52,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16262	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	213	38	20	0.03333333333333333	0.0	A:86:C:3:G:0:T:0:N:0:O:1	A:213:C:0:G:0:T:0:N:0:O:0	0,51,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	199	38	20	0.020618556701030927	0.0	A:0:C:1:G:2:T:87:N:0:O:7	A:0:C:0:G:0:T:199:N:0:O:0	2,41,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	200	38	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:199:T:1:N:0:O:0	2,41,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	200	38	20	0.030927835051546393	0.0	A:0:C:0:G:93:T:3:N:0:O:1	A:0:C:0:G:200:T:0:N:0:O:0	3,52,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	202	38	20	0.052083333333333336	0.0	A:5:C:0:G:84:T:0:N:0:O:7	A:0:C:0:G:202:T:0:N:0:O:0	5,33,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16823	G	T	G	1	near depth threshold	Alarm	False	False	True	42	198	38	20	0.023809523809523808	0.0	A:0:C:0:G:37:T:1:N:0:O:4	A:0:C:0:G:198:T:0:N:0:O:0	0,18,1,24	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	198	38	20	0.06172839506172839	0.0	A:0:C:0:G:5:T:74:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:0	0,42,5,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	244	393	38	20	0.020491803278688523	0.0	A:215:C:0:G:5:T:0:N:0:O:24	A:393:C:0:G:0:T:0:N:0:O:0	5,98,0,146	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	393	38	20	0.025	0.0	A:5:C:0:G:169:T:0:N:0:O:26	A:0:C:0:G:393:T:0:N:0:O:0	5,51,0,149	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	183	392	38	20	0.02185792349726776	0.0	A:179:C:0:G:4:T:0:N:0:O:0	A:392:C:0:G:0:T:0:N:0:O:0	4,61,0,122	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	197	38	20	0.03773584905660377	0.0	A:102:C:0:G:4:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	4,51,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	196	38	20	0.020618556701030927	0.0	A:0:C:93:G:0:T:2:N:0:O:2	A:0:C:196:G:0:T:0:N:0:O:0	0,52,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	205	393	38	20	0.02926829268292683	0.0	A:0:C:188:G:0:T:6:N:0:O:11	A:1:C:392:G:0:T:0:N:0:O:0	0,107,6,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17753	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	197	38	20	0.024793388429752067	0.01015228426395939	A:0:C:0:G:117:T:3:N:0:O:1	A:0:C:0:G:195:T:2:N:0:O:0	0,49,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	305	38	20	0.0449438202247191	0.0	A:0:C:84:G:0:T:4:N:0:O:1	A:0:C:305:G:0:T:0:N:0:O:0	0,40,4,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	305	38	20	0.034482758620689655	0.0	A:104:C:0:G:0:T:4:N:0:O:8	A:305:C:0:G:0:T:0:N:0:O:0	0,41,4,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	305	38	20	0.05405405405405406	0.0	A:6:C:0:G:104:T:0:N:0:O:1	A:0:C:0:G:305:T:0:N:0:O:0	0,49,6,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	206	38	20	0.03488372093023256	0.0	A:0:C:0:G:3:T:83:N:0:O:0	A:0:C:0:G:0:T:206:N:0:O:0	3,23,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	18735	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	197	38	20	0.022988505747126436	0.0	A:80:C:2:G:0:T:0:N:0:O:5	A:197:C:0:G:0:T:0:N:0:O:0	0,54,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	114	197	38	20	0.9649122807017544	1.0	A:0:C:110:G:0:T:4:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	53,53,57,61	279.237	1526.6	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	18738	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	197	38	20	0.02702702702702703	0.0	A:0:C:0:G:3:T:108:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,54,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	199	38	20	0.07377049180327869	0.0	A:9:C:0:G:111:T:0:N:0:O:2	A:0:C:0:G:199:T:0:N:0:O:0	9,44,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	19194	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	199	38	20	0.02097902097902098	0.005025125628140704	A:3:C:0:G:138:T:0:N:0:O:2	A:1:C:0:G:198:T:0:N:0:O:0	0,77,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	198	38	20	0.13513513513513514	0.0	A:0:C:63:G:0:T:10:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,58,10,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	19675	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	189	38	20	0.03418803418803419	0.0	A:4:C:111:G:0:T:0:N:0:O:2	A:0:C:189:G:0:T:0:N:0:O:0	0,40,4,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	189	38	20	0.02127659574468085	0.0	A:92:C:0:G:0:T:2:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	0,36,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	189	38	20	0.03529411764705882	0.0	A:0:C:3:G:0:T:80:N:0:O:2	A:0:C:0:G:0:T:189:N:0:O:0	0,43,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	313	38	20	0.02247191011235955	0.0	A:0:C:0:G:2:T:86:N:0:O:1	A:0:C:0:G:0:T:313:N:0:O:0	0,26,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	316	38	20	0.031914893617021274	0.0	A:0:C:90:G:0:T:3:N:0:O:1	A:1:C:315:G:0:T:0:N:0:O:0	0,38,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	209	392	38	20	0.028708133971291867	0.0	A:6:C:0:G:201:T:0:N:0:O:2	A:0:C:0:G:392:T:0:N:0:O:0	6,54,0,155	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	200	38	20	0.026785714285714284	0.0	A:1:C:0:G:3:T:108:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	3,47,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	243	38	20	0.05405405405405406	0.0	A:4:C:0:G:69:T:0:N:0:O:1	A:0:C:0:G:243:T:0:N:0:O:0	4,50,0,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	20409	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	242	38	20	0.02	0.0	A:0:C:0:G:2:T:96:N:0:O:2	A:0:C:0:G:0:T:242:N:0:O:0	0,51,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	20687	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	258	38	20	0.034482758620689655	0.0	A:0:C:110:G:0:T:4:N:0:O:2	A:0:C:258:G:0:T:0:N:0:O:0	1,58,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	194	38	20	0.028846153846153848	0.0	A:100:C:0:G:3:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	0,22,3,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	194	38	20	0.03597122302158273	0.010309278350515464	A:5:C:0:G:124:T:0:N:0:O:10	A:2:C:0:G:192:T:0:N:0:O:0	0,40,5,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	103	38	20	0.15151515151515152	0.009708737864077669	A:0:C:0:G:73:T:15:N:0:O:11	A:0:C:0:G:102:T:1:N:0:O:0	0,57,15,42	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21433	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	190	38	20	0.03125	0.0	A:3:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	3,64,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	190	38	20	0.0625	0.0	A:75:C:0:G:5:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	5,41,0,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	190	38	20	0.04716981132075472	0.0	A:5:C:0:G:98:T:0:N:0:O:3	A:0:C:0:G:190:T:0:N:0:O:0	5,64,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	190	38	20	0.030612244897959183	0.0	A:95:C:3:G:0:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	3,70,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	209	38	20	0.11904761904761904	0.0	A:0:C:68:G:0:T:10:N:0:O:6	A:0:C:209:G:0:T:0:N:0:O:0	9,28,1,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	210	38	20	0.0196078431372549	0.0	A:0:C:95:G:0:T:2:N:0:O:5	A:0:C:210:G:0:T:0:N:0:O:0	0,82,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	210	38	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:89:N:0:O:1	A:0:C:0:G:0:T:210:N:0:O:0	0,78,2,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21874	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	211	38	20	0.029411764705882353	0.004739336492890996	A:3:C:0:G:99:T:0:N:0:O:0	A:1:C:0:G:210:T:0:N:0:O:0	0,72,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	211	38	20	0.02097902097902098	0.0	A:97:C:0:G:0:T:3:N:0:O:43	A:211:C:0:G:0:T:0:N:0:O:0	0,108,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	21897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	211	38	20	0.02142857142857143	0.0	A:0:C:125:G:0:T:3:N:0:O:12	A:1:C:210:G:0:T:0:N:0:O:0	1,83,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	198	38	20	0.059322033898305086	0.0	A:0:C:0:G:7:T:111:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	7,60,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	22326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	22	38	20	0.021739130434782608	0.0	A:0:C:89:G:0:T:2:N:0:O:1	A:0:C:22:G:0:T:0:N:0:O:0	0,64,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	22377	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	28	38	20	0.023622047244094488	0.0	A:0:C:124:G:0:T:3:N:0:O:0	A:0:C:28:G:0:T:0:N:0:O:0	1,62,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	217	190	38	20	0.03225806451612903	0.0	A:0:C:7:G:0:T:209:N:0:O:1	A:0:C:0:G:0:T:190:N:0:O:0	0,123,7,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	164	247	38	20	0.024390243902439025	0.0	A:4:C:1:G:159:T:0:N:0:O:0	A:0:C:0:G:247:T:0:N:0:O:0	4,33,0,131	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	197	38	20	0.023809523809523808	0.0	A:0:C:3:G:0:T:120:N:0:O:3	A:0:C:0:G:0:T:197:N:0:O:0	0,83,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23088	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	197	38	20	0.019867549668874173	0.0	A:3:C:0:G:123:T:0:N:0:O:25	A:0:C:0:G:197:T:0:N:0:O:0	3,49,0,102	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23248	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	200	38	20	0.029411764705882353	0.005	A:0:C:98:G:0:T:3:N:0:O:1	A:1:C:198:G:0:T:1:N:0:O:0	1,42,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	196	38	20	0.019801980198019802	0.0	A:2:C:0:G:92:T:0:N:0:O:7	A:0:C:0:G:195:T:0:N:0:O:1	2,19,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	196	38	20	0.041237113402061855	0.0	A:0:C:4:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:1	0,53,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23622	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	204	38	20	0.020618556701030927	0.0	A:2:C:0:G:0:T:94:N:0:O:1	A:0:C:0:G:0:T:204:N:0:O:0	0,42,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	204	38	20	0.020618556701030927	0.0	A:95:C:0:G:2:T:0:N:0:O:0	A:204:C:0:G:0:T:0:N:0:O:0	2,45,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	194	38	20	0.23076923076923078	0.0	A:0:C:70:G:0:T:21:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,56,21,35	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	194	38	20	0.023529411764705882	0.0	A:2:C:0:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	1,13,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	23997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	194	38	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:194:G:0:T:0:N:0:O:0	0,55,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	128	194	38	20	1.0	1.0	A:0:C:0:G:0:T:128:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	43,43,85,85	210.0	721.7	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	190	38	20	0.03389830508474576	0.0	A:51:C:0:G:2:T:0:N:0:O:6	A:190:C:0:G:0:T:0:N:0:O:0	0,47,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	190	38	20	0.04854368932038835	0.0	A:5:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:189:T:1:N:0:O:0	5,23,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	190	38	20	0.042105263157894736	0.0	A:4:C:0:G:86:T:0:N:0:O:5	A:0:C:0:G:190:T:0:N:0:O:0	4,11,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	197	38	20	0.022388059701492536	0.0	A:3:C:128:G:0:T:2:N:0:O:1	A:0:C:197:G:0:T:0:N:0:O:0	3,77,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	198	38	20	0.02857142857142857	0.0	A:3:C:0:G:101:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	2,48,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	147	216	38	20	0.04081632653061224	0.0	A:0:C:0:G:6:T:140:N:0:O:1	A:0:C:0:G:0:T:216:N:0:O:0	6,47,0,100	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	216	38	20	0.021739130434782608	0.0	A:0:C:85:G:0:T:2:N:0:O:5	A:0:C:216:G:0:T:0:N:0:O:0	0,71,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	25560	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	216	38	20	0.030534351145038167	0.0	A:0:C:4:G:0:T:127:N:0:O:0	A:0:C:0:G:0:T:216:N:0:O:0	4,41,0,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25604	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	199	38	20	0.030303030303030304	0.0	A:0:C:4:G:0:T:127:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	0,71,4,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	198	38	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,63,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	198	38	20	0.024390243902439025	0.0	A:0:C:79:G:0:T:2:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,66,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	198	38	20	0.020618556701030927	0.0	A:2:C:0:G:90:T:0:N:0:O:5	A:0:C:0:G:198:T:0:N:0:O:0	2,33,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	198	38	20	0.0273972602739726	0.005050505050505051	A:2:C:0:G:68:T:0:N:0:O:3	A:1:C:0:G:197:T:0:N:0:O:0	2,15,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	138	199	38	20	0.014492753623188406	0.005025125628140704	A:2:C:97:G:0:T:0:N:0:O:39	A:1:C:197:G:0:T:0:N:0:O:1	2,58,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	198	38	20	0.041666666666666664	0.0	A:68:C:3:G:0:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	1,32,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25809	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	198	38	20	0.029411764705882353	0.0	A:99:C:0:G:3:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	3,55,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	198	38	20	0.03636363636363636	0.0	A:0:C:106:G:0:T:4:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,60,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	198	38	20	0.038834951456310676	0.0	A:98:C:0:G:4:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	4,39,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	198	38	20	0.04597701149425287	0.0	A:83:C:0:G:4:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	4,29,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	198	38	20	0.02654867256637168	0.0	A:110:C:0:G:3:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	3,47,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	25971	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	201	38	20	0.028037383177570093	0.0	A:3:C:0:G:104:T:0:N:0:O:0	A:0:C:0:G:201:T:0:N:0:O:0	3,52,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	329	38	20	0.021505376344086023	0.0	A:2:C:0:G:90:T:0:N:0:O:1	A:0:C:0:G:328:T:1:N:0:O:0	2,35,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	329	38	20	0.022058823529411766	0.0	A:3:C:122:G:0:T:0:N:0:O:11	A:0:C:329:G:0:T:0:N:0:O:0	3,80,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26143	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	329	38	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:329:T:0:N:0:O:0	2,47,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26176	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	328	38	20	0.040983606557377046	0.0	A:5:C:117:G:0:T:0:N:0:O:0	A:0:C:328:G:0:T:0:N:0:O:0	5,68,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	380	38	20	0.02717391304347826	0.0	A:5:C:0:G:170:T:0:N:0:O:9	A:0:C:0:G:379:T:1:N:0:O:0	5,72,0,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	197	38	20	0.04040404040404041	0.0	A:4:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	4,53,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	197	38	20	0.045454545454545456	0.0	A:4:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	4,26,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	223	394	38	20	0.03587443946188341	0.0	A:0:C:215:G:0:T:8:N:0:O:0	A:2:C:392:G:0:T:0:N:0:O:0	0,186,8,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	265	395	38	20	0.05660377358490566	0.002531645569620253	A:0:C:15:G:0:T:250:N:0:O:0	A:0:C:1:G:0:T:394:N:0:O:0	0,191,15,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	197	38	20	0.03669724770642202	0.0	A:104:C:0:G:4:T:0:N:0:O:1	A:197:C:0:G:0:T:0:N:0:O:0	4,70,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	199	38	20	0.13414634146341464	0.0	A:11:C:0:G:69:T:0:N:0:O:2	A:0:C:0:G:199:T:0:N:0:O:0	11,21,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	158	199	38	20	0.9683544303797469	0.9949748743718593	A:1:C:153:G:0:T:0:N:0:O:4	A:1:C:198:G:0:T:0:N:0:O:0	106,110,47,48	342.247	1933.0	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	26803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	190	38	20	0.022900763358778626	0.0	A:3:C:0:G:126:T:0:N:0:O:2	A:0:C:0:G:190:T:0:N:0:O:0	3,76,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	200	38	20	0.017699115044247787	0.0	A:97:C:0:G:2:T:0:N:0:O:14	A:200:C:0:G:0:T:0:N:0:O:0	2,46,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	200	38	20	0.08045977011494253	0.0	A:7:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	7,26,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	200	38	20	0.060240963855421686	0.0	A:0:C:78:G:0:T:5:N:0:O:0	A:0:C:200:G:0:T:0:N:0:O:0	0,63,5,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	196	38	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,47,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	196	38	20	0.024390243902439025	0.0	A:3:C:0:G:118:T:0:N:0:O:2	A:0:C:0:G:195:T:1:N:0:O:0	3,75,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28046	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	189	38	20	0.018518518518518517	0.0	A:0:C:2:G:0:T:96:N:0:O:10	A:0:C:0:G:0:T:189:N:0:O:0	0,62,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	121	189	38	20	0.9917355371900827	0.9947089947089947	A:0:C:120:G:0:T:0:N:0:O:1	A:1:C:188:G:0:T:0:N:0:O:0	66,67,54,54	204.466	1748.3	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	232	378	38	20	0.9568965517241379	0.9973544973544973	A:0:C:222:G:0:T:5:N:0:O:5	A:1:C:377:G:0:T:0:N:0:O:0	128,138,94,94	242.627	1496.3	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	190	38	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:90:N:0:O:6	A:0:C:0:G:0:T:190:N:0:O:0	0,69,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	190	38	20	0.02197802197802198	0.0	A:2:C:82:G:0:T:1:N:0:O:6	A:0:C:190:G:0:T:0:N:0:O:0	2,64,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28402	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	190	38	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:0:N:0:O:1	A:190:C:0:G:0:T:0:N:0:O:0	2,66,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	312	38	20	0.02702702702702703	0.0	A:0:C:72:G:0:T:2:N:0:O:0	A:1:C:311:G:0:T:0:N:0:O:0	0,39,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28725	C	T	C	16	ignore low frequency variant	Pass	False	False	True	234	379	38	20	0.021367521367521368	0.0	A:0:C:225:G:0:T:5:N:0:O:4	A:2:C:377:G:0:T:0:N:0:O:0	0,106,5,128	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	285	38	20	0.043478260869565216	0.0	A:0:C:85:G:0:T:4:N:0:O:3	A:0:C:285:G:0:T:0:N:0:O:0	0,29,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	363	38	20	0.019230769230769232	0.0	A:0:C:48:G:0:T:1:N:0:O:3	A:0:C:363:G:0:T:0:N:0:O:0	0,24,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	114	362	38	20	0.9912280701754386	1.0	A:0:C:0:G:113:T:0:N:0:O:1	A:0:C:0:G:362:T:0:N:0:O:0	30,31,83,83	194.672	1524.6	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	361	38	20	0.024390243902439025	0.0	A:0:C:80:G:0:T:2:N:0:O:0	A:0:C:361:G:0:T:0:N:0:O:0	0,28,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	361	38	20	0.029411764705882353	0.0	A:0:C:90:G:0:T:3:N:0:O:9	A:0:C:361:G:0:T:0:N:0:O:0	0,28,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	358	38	20	0.034482758620689655	0.0	A:0:C:84:G:0:T:3:N:0:O:0	A:0:C:358:G:0:T:0:N:0:O:0	0,28,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	393	38	20	0.04716981132075472	0.0	A:0:C:96:G:0:T:5:N:0:O:5	A:1:C:392:G:0:T:0:N:0:O:0	0,98,5,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	29029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	174	393	38	20	0.022988505747126436	0.0	A:0:C:4:G:0:T:166:N:0:O:4	A:0:C:0:G:0:T:393:N:0:O:0	0,82,4,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	299	38	20	0.02666666666666667	0.0	A:2:C:0:G:72:T:0:N:0:O:1	A:0:C:0:G:299:T:0:N:0:O:0	0,52,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	29176	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	299	38	20	0.021052631578947368	0.0	A:2:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:298:T:1:N:0:O:0	2,43,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	90	299	38	20	0.03333333333333333	0.0	A:0:C:3:G:86:T:0:N:0:O:1	A:0:C:0:G:299:T:0:N:0:O:0	3,40,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	203	38	20	0.019801980198019802	0.0	A:2:C:0:G:91:T:0:N:0:O:8	A:0:C:0:G:202:T:1:N:0:O:0	2,22,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00030	artic-pipeline	NB11	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	127	87	38	20	0.8661417322834646	1.0	A:2:C:0:G:110:T:0:N:0:O:15	A:0:C:0:G:87:T:0:N:0:O:0	44,60,66,67	400.992	1079.3	yes	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00030	artic-pipeline	NB11	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	38	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	99	T	C	T	1	near depth threshold	Alarm	False	False	True	32	152	28	20	0.03125	0.0	A:0:C:1:G:0:T:23:N:0:O:8	A:0:C:0:G:0:T:152:N:0:O:0	0,10,1,22	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	67	152	28	20	0.014925373134328358	0.013157894736842105	A:1:C:32:G:0:T:0:N:0:O:34	A:2:C:150:G:0:T:0:N:0:O:0	0,45,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	155	28	20	0.03076923076923077	0.0	A:0:C:2:G:0:T:62:N:0:O:1	A:0:C:0:G:0:T:155:N:0:O:0	0,12,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	180	C	T	C	1	near depth threshold	Alarm	False	False	True	27	157	28	20	0.037037037037037035	0.0	A:0:C:23:G:0:T:1:N:0:O:3	A:0:C:157:G:0:T:0:N:0:O:0	0,7,1,20	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	157	28	20	0.024390243902439025	0.0	A:0:C:1:G:0:T:40:N:0:O:0	A:0:C:0:G:0:T:157:N:0:O:0	0,7,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	292	C	A	C	16	ignore low frequency variant	Pass	False	False	True	71	152	28	20	0.028169014084507043	0.0	A:2:C:69:G:0:T:0:N:0:O:0	A:0:C:152:G:0:T:0:N:0:O:0	0,7,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	188	28	20	0.0673076923076923	0.0	A:0:C:7:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:188:N:0:O:0	0,32,7,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1006	G	A	G	1	near depth threshold	Alarm	False	False	True	30	146	28	20	0.03333333333333333	0.0	A:1:C:0:G:28:T:0:N:0:O:1	A:0:C:0:G:146:T:0:N:0:O:0	1,14,0,16	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	146	28	20	0.03333333333333333	0.0	A:0:C:87:G:0:T:3:N:0:O:0	A:2:C:144:G:0:T:0:N:0:O:0	3,79,0,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	147	28	20	0.058823529411764705	0.0	A:2:C:0:G:26:T:0:N:0:O:6	A:0:C:0:G:146:T:0:N:0:O:1	1,15,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1142	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	146	28	20	0.01818181818181818	0.0	A:0:C:47:G:0:T:1:N:0:O:7	A:0:C:146:G:0:T:0:N:0:O:0	0,39,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1264	G	T	G	16	ignore low frequency variant	Pass	False	False	True	42	146	28	20	0.023809523809523808	0.00684931506849315	A:0:C:0:G:41:T:1:N:0:O:0	A:0:C:0:G:145:T:1:N:0:O:0	1,25,0,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	290	28	20	0.041237113402061855	0.0	A:0:C:93:G:0:T:4:N:0:O:0	A:1:C:289:G:0:T:0:N:0:O:0	0,32,4,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	288	28	20	0.03296703296703297	0.0	A:0:C:3:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:288:N:0:O:0	0,35,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	170	28	20	0.020202020202020204	0.0	A:0:C:91:G:0:T:2:N:0:O:6	A:1:C:169:G:0:T:0:N:0:O:0	0,12,2,87	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	1696	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	141	28	20	0.025210084033613446	0.0070921985815602835	A:0:C:0:G:116:T:3:N:0:O:0	A:1:C:0:G:139:T:1:N:0:O:0	0,57,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	141	28	20	0.027777777777777776	0.0	A:1:C:3:G:0:T:100:N:0:O:4	A:0:C:0:G:0:T:141:N:0:O:0	0,47,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	141	28	20	0.0273972602739726	0.0	A:70:C:0:G:2:T:0:N:0:O:1	A:141:C:0:G:0:T:0:N:0:O:0	1,7,1,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	157	28	20	0.021505376344086023	0.0	A:91:C:2:G:0:T:0:N:0:O:0	A:157:C:0:G:0:T:0:N:0:O:0	0,60,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	157	28	20	0.022988505747126436	0.0	A:0:C:84:G:0:T:2:N:0:O:1	A:1:C:156:G:0:T:0:N:0:O:0	2,69,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	157	28	20	0.030303030303030304	0.0	A:3:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:157:T:0:N:0:O:0	3,29,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	2235	G	T	G	16	ignore low frequency variant	Pass	False	False	True	158	308	28	20	0.02531645569620253	0.0	A:1:C:0:G:151:T:4:N:0:O:2	A:0:C:0:G:308:T:0:N:0:O:0	0,95,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	176	28	20	0.038461538461538464	0.0	A:100:C:4:G:0:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	4,31,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	2480	A	G	G	17	accept high frequency variant	Pass	False	True	True	88	175	28	20	0.8977272727272727	1.0	A:0:C:0:G:79:T:0:N:0:O:9	A:0:C:0:G:175:T:0:N:0:O:0	39,48,40,40	412.453	1341.0	yes	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	2558	C	T	T	17	accept high frequency variant	Pass	False	True	True	278	310	28	20	0.9856115107913669	1.0	A:0:C:3:G:0:T:274:N:0:O:1	A:0:C:0:G:0:T:310:N:0:O:0	125,125,149,153	70.0	1858.6	yes	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	176	28	20	0.02531645569620253	0.0	A:0:C:76:G:0:T:2:N:0:O:1	A:0:C:176:G:0:T:0:N:0:O:0	0,63,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	159	28	20	0.04285714285714286	0.0	A:67:C:3:G:0:T:0:N:0:O:0	A:159:C:0:G:0:T:0:N:0:O:0	1,20,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	159	28	20	0.027522935779816515	0.0	A:0:C:96:G:0:T:3:N:0:O:10	A:0:C:159:G:0:T:0:N:0:O:0	1,38,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	159	28	20	0.020618556701030927	0.012578616352201259	A:2:C:0:G:92:T:2:N:0:O:1	A:0:C:0:G:157:T:2:N:0:O:0	0,30,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	159	28	20	0.02727272727272727	0.0	A:0:C:3:G:0:T:104:N:0:O:3	A:0:C:0:G:0:T:159:N:0:O:0	1,54,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	70	158	28	20	0.04285714285714286	0.006329113924050633	A:0:C:0:G:52:T:3:N:0:O:15	A:0:C:0:G:157:T:1:N:0:O:0	1,49,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	3175	A	G	A	16	ignore low frequency variant	Pass	False	False	True	249	293	28	20	0.020080321285140562	0.0	A:239:C:0:G:5:T:1:N:0:O:4	A:293:C:0:G:0:T:0:N:0:O:0	5,91,0,158	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	158	28	20	0.021505376344086023	0.0	A:89:C:0:G:2:T:0:N:0:O:2	A:158:C:0:G:0:T:0:N:0:O:0	2,14,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	158	28	20	0.019801980198019802	0.0	A:98:C:0:G:2:T:0:N:0:O:1	A:158:C:0:G:0:T:0:N:0:O:0	2,28,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	158	28	20	0.058823529411764705	0.0	A:0:C:77:G:0:T:5:N:0:O:3	A:0:C:158:G:0:T:0:N:0:O:0	0,41,5,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	158	28	20	0.021739130434782608	0.0	A:43:C:0:G:1:T:0:N:0:O:2	A:158:C:0:G:0:T:0:N:0:O:0	0,2,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	151	28	20	0.03896103896103896	0.0	A:3:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:150:T:1:N:0:O:0	0,34,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3980	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	151	28	20	0.02564102564102564	0.0	A:2:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:151:T:0:N:0:O:0	2,28,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	151	28	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:151:N:0:O:0	0,39,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	151	28	20	0.022222222222222223	0.0	A:0:C:84:G:0:T:2:N:0:O:4	A:1:C:150:G:0:T:0:N:0:O:0	0,41,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	138	28	20	0.05172413793103448	0.0	A:0:C:55:G:0:T:3:N:0:O:0	A:0:C:138:G:0:T:0:N:0:O:0	0,32,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	137	28	20	0.05714285714285714	0.0	A:0:C:2:G:1:T:32:N:0:O:0	A:0:C:0:G:0:T:137:N:0:O:0	0,32,2,3	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	180	284	28	20	0.022222222222222223	0.0	A:0:C:0:G:168:T:4:N:0:O:8	A:0:C:0:G:284:T:0:N:0:O:0	0,126,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	169	28	20	0.028985507246376812	0.0	A:0:C:67:G:0:T:2:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,28,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4912	A	C	C	17	accept high frequency variant	Pass	False	True	True	120	169	28	20	1.0	1.0	A:0:C:120:G:0:T:0:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	34,34,86,86	343.216	1966.9	yes	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	168	28	20	0.030303030303030304	0.0	A:0:C:59:G:0:T:2:N:0:O:5	A:0:C:168:G:0:T:0:N:0:O:0	0,30,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	168	28	20	0.018691588785046728	0.0	A:0:C:0:G:2:T:96:N:0:O:9	A:0:C:0:G:0:T:168:N:0:O:0	0,32,2,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	4990	C	T	C	16	ignore low frequency variant	Pass	False	False	True	212	338	28	20	0.02358490566037736	0.0	A:0:C:207:G:0:T:5:N:0:O:0	A:0:C:338:G:0:T:0:N:0:O:0	0,70,5,142	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	5262	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	190	28	20	0.04	0.0	A:0:C:47:G:0:T:2:N:0:O:1	A:2:C:188:G:0:T:0:N:0:O:0	0,34,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	189	28	20	0.02564102564102564	0.0	A:0:C:2:G:1:T:75:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	0,39,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	174	28	20	0.020618556701030927	0.0	A:91:C:0:G:1:T:2:N:0:O:3	A:174:C:0:G:0:T:0:N:0:O:0	0,50,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	157	28	20	0.0547945205479452	0.0	A:0:C:69:G:0:T:4:N:0:O:0	A:0:C:157:G:0:T:0:N:0:O:0	0,64,4,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	157	28	20	0.06329113924050633	0.0	A:0:C:5:G:0:T:72:N:0:O:2	A:0:C:0:G:0:T:157:N:0:O:0	0,57,5,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	157	28	20	0.024390243902439025	0.006369426751592357	A:2:C:0:G:79:T:0:N:0:O:1	A:1:C:0:G:155:T:1:N:0:O:0	2,22,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	162	28	20	0.03488372093023256	0.0	A:3:C:0:G:80:T:0:N:0:O:3	A:0:C:0:G:162:T:0:N:0:O:0	3,18,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	162	28	20	0.04395604395604396	0.0	A:0:C:86:G:0:T:4:N:0:O:1	A:1:C:161:G:0:T:0:N:0:O:0	0,70,4,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	162	28	20	0.02631578947368421	0.0	A:0:C:111:G:0:T:3:N:0:O:0	A:3:C:159:G:0:T:0:N:0:O:0	2,60,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	125	28	20	0.037383177570093455	0.0	A:0:C:98:G:0:T:4:N:0:O:5	A:0:C:125:G:0:T:0:N:0:O:0	0,71,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	125	28	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:125:N:0:O:0	0,64,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	6353	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	125	28	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:99:N:0:O:0	A:0:C:0:G:0:T:125:N:0:O:0	0,46,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	165	28	20	0.020833333333333332	0.0	A:92:C:0:G:2:T:0:N:0:O:2	A:165:C:0:G:0:T:0:N:0:O:0	2,29,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	201	285	28	20	0.01990049751243781	0.0	A:195:C:0:G:4:T:0:N:0:O:2	A:285:C:0:G:0:T:0:N:0:O:0	4,70,0,131	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	64	171	28	20	0.125	0.0	A:54:C:0:G:0:T:8:N:0:O:2	A:171:C:0:G:0:T:0:N:0:O:0	0,46,8,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	166	28	20	0.02586206896551724	0.0	A:108:C:0:G:3:T:0:N:0:O:5	A:166:C:0:G:0:T:0:N:0:O:0	3,74,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	166	28	20	0.03296703296703297	0.006024096385542169	A:3:C:0:G:87:T:0:N:0:O:1	A:1:C:0:G:163:T:2:N:0:O:0	3,55,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	166	28	20	0.03333333333333333	0.0	A:0:C:0:G:3:T:87:N:0:O:0	A:0:C:0:G:0:T:166:N:0:O:0	3,48,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	166	28	20	0.020618556701030927	0.0	A:94:C:0:G:2:T:0:N:0:O:1	A:166:C:0:G:0:T:0:N:0:O:0	2,80,0,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7470	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	152	28	20	0.028846153846153848	0.0	A:99:C:0:G:3:T:0:N:0:O:2	A:152:C:0:G:0:T:0:N:0:O:0	3,53,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	152	28	20	0.05084745762711865	0.0	A:3:C:0:G:53:T:1:N:0:O:2	A:0:C:0:G:152:T:0:N:0:O:0	3,14,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	7487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	152	28	20	0.023809523809523808	0.0	A:81:C:0:G:2:T:0:N:0:O:1	A:152:C:0:G:0:T:0:N:0:O:0	2,31,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	184	28	20	0.053763440860215055	0.0	A:0:C:5:G:0:T:83:N:0:O:5	A:0:C:0:G:0:T:184:N:0:O:0	0,34,5,59	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	7712	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	184	28	20	0.02912621359223301	0.0	A:0:C:100:G:0:T:3:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,28,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	184	28	20	0.042105263157894736	0.0	A:0:C:91:G:0:T:4:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,30,4,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	164	28	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,38,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	164	28	20	0.04	0.0	A:95:C:4:G:0:T:0:N:0:O:1	A:164:C:0:G:0:T:0:N:0:O:0	0,46,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	164	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,41,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	245	28	20	0.028169014084507043	0.0	A:69:C:0:G:2:T:0:N:0:O:0	A:245:C:0:G:0:T:0:N:0:O:0	2,33,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	245	28	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:245:T:0:N:0:O:0	2,38,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	188	28	20	0.037383177570093455	0.0	A:0:C:4:G:0:T:103:N:0:O:0	A:0:C:0:G:0:T:188:N:0:O:0	0,71,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	8715	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	182	28	20	0.11702127659574468	0.07142857142857142	A:0:C:82:G:0:T:11:N:0:O:1	A:0:C:169:G:0:T:13:N:0:O:0	2,52,9,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	136	28	20	0.05194805194805195	0.007352941176470588	A:4:C:0:G:0:T:65:N:0:O:8	A:1:C:0:G:0:T:135:N:0:O:0	4,25,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	9388	G	T	N	2	allele in negative control	Alarm	False	False	False	126	128	28	20	0.031746031746031744	0.0	A:0:C:0:G:121:T:4:N:0:O:1	A:0:C:0:G:128:T:0:N:0:O:0	0,58,4,68	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	128	28	20	0.03333333333333333	0.0	A:4:C:0:G:0:T:115:N:0:O:1	A:0:C:0:G:0:T:128:N:0:O:0	0,49,4,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	285	28	20	0.04195804195804196	0.0	A:0:C:133:G:0:T:6:N:0:O:4	A:0:C:285:G:0:T:0:N:0:O:0	0,128,6,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	157	28	20	0.017857142857142856	0.0	A:0:C:79:G:0:T:2:N:0:O:31	A:0:C:157:G:0:T:0:N:0:O:0	2,108,0,4	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	157	28	20	0.04081632653061224	0.0	A:0:C:2:G:0:T:47:N:0:O:0	A:0:C:0:G:0:T:157:N:0:O:0	2,47,0,2	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	179	28	20	0.023529411764705882	0.0	A:0:C:2:G:0:T:80:N:0:O:3	A:0:C:0:G:0:T:179:N:0:O:0	0,53,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	180	28	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:43:N:0:O:1	A:0:C:0:G:0:T:180:N:0:O:0	1,41,0,4	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	180	28	20	0.03636363636363636	0.0	A:0:C:0:G:106:T:4:N:0:O:0	A:0:C:0:G:180:T:0:N:0:O:0	4,49,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	171	28	20	0.037037037037037035	0.0	A:0:C:3:G:0:T:72:N:0:O:6	A:0:C:0:G:0:T:171:N:0:O:0	0,62,3,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	171	28	20	0.04040404040404041	0.0	A:0:C:95:G:0:T:4:N:0:O:0	A:2:C:169:G:0:T:0:N:0:O:0	0,62,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	170	28	20	0.037383177570093455	0.0	A:0:C:0:G:4:T:100:N:0:O:3	A:0:C:0:G:0:T:170:N:0:O:0	0,59,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	11083	G	T	T	3	illumina variant callers disagree	Alarm	True	True	True	48	165	28	20	0.4583333333333333	0.7575757575757576	A:0:C:0:G:0:T:22:N:0:O:26	A:0:C:0:G:0:T:125:N:0:O:40	5,31,17,17	24.046	680.4	maybe	.	.	.	mixed position	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	11096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	174	28	20	0.02631578947368421	0.0	A:0:C:1:G:0:T:36:N:0:O:1	A:0:C:0:G:0:T:174:N:0:O:0	0,31,1,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	11107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	173	28	20	0.023255813953488372	0.0	A:0:C:0:G:2:T:84:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,52,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	11109	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	175	28	20	0.023255813953488372	0.0	A:0:C:84:G:0:T:2:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,56,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	11124	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	175	28	20	0.022222222222222223	0.0	A:0:C:85:G:0:T:2:N:0:O:3	A:0:C:175:G:0:T:0:N:0:O:0	0,53,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	170	28	20	0.03	0.0	A:95:C:0:G:0:T:3:N:0:O:2	A:170:C:0:G:0:T:0:N:0:O:0	3,55,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	11818	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	183	28	20	0.02127659574468085	0.0	A:1:C:2:G:0:T:90:N:0:O:1	A:0:C:0:G:0:T:183:N:0:O:0	0,54,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	209	162	28	20	0.028708133971291867	0.018518518518518517	A:0:C:0:G:131:T:6:N:0:O:72	A:0:C:0:G:158:T:3:N:0:O:1	0,60,6,149	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	160	28	20	0.09230769230769231	0.00625	A:59:C:0:G:6:T:0:N:0:O:0	A:159:C:0:G:1:T:0:N:0:O:0	0,38,6,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	12049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	161	28	20	0.022727272727272728	0.006211180124223602	A:0:C:126:G:0:T:3:N:0:O:3	A:0:C:160:G:0:T:1:N:0:O:0	1,42,2,90	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	218	270	28	20	0.027522935779816515	0.0	A:0:C:211:G:0:T:6:N:0:O:1	A:0:C:270:G:0:T:0:N:0:O:0	0,86,6,132	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	108	28	20	0.022900763358778626	0.0	A:126:C:0:G:3:T:0:N:0:O:2	A:108:C:0:G:0:T:0:N:0:O:0	3,43,0,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	108	28	20	0.037037037037037035	0.0	A:3:C:0:G:59:T:0:N:0:O:19	A:0:C:0:G:106:T:2:N:0:O:0	1,50,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	108	28	20	0.039603960396039604	0.0	A:4:C:0:G:95:T:0:N:0:O:2	A:0:C:0:G:107:T:1:N:0:O:0	4,19,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	127	28	20	0.019801980198019802	0.0	A:2:C:96:G:0:T:0:N:0:O:3	A:0:C:126:G:0:T:1:N:0:O:0	0,61,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	127	28	20	0.03225806451612903	0.0	A:0:C:2:G:0:T:56:N:0:O:4	A:0:C:0:G:0:T:127:N:0:O:0	0,14,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	128	28	20	0.05747126436781609	0.0	A:0:C:80:G:0:T:5:N:0:O:2	A:0:C:127:G:0:T:0:N:0:O:1	0,72,5,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	109	28	20	0.02857142857142857	0.0	A:2:C:0:G:66:T:0:N:0:O:2	A:0:C:0:G:109:T:0:N:0:O:0	0,24,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	109	28	20	0.030612244897959183	0.0	A:93:C:0:G:3:T:0:N:0:O:2	A:109:C:0:G:0:T:0:N:0:O:0	3,32,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	133	28	20	0.022727272727272728	0.0	A:3:C:0:G:125:T:0:N:0:O:4	A:0:C:0:G:133:T:0:N:0:O:0	3,68,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	170	28	20	0.04938271604938271	0.0	A:0:C:77:G:0:T:4:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,72,4,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	170	28	20	0.0380952380952381	0.0	A:4:C:0:G:90:T:0:N:0:O:11	A:0:C:0:G:170:T:0:N:0:O:0	4,48,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	170	28	20	0.029850746268656716	0.0058823529411764705	A:0:C:65:G:0:T:2:N:0:O:0	A:1:C:168:G:0:T:1:N:0:O:0	0,54,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	170	28	20	0.020202020202020204	0.0	A:96:C:0:G:2:T:0:N:0:O:1	A:170:C:0:G:0:T:0:N:0:O:0	1,50,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	164	28	20	0.024691358024691357	0.0	A:2:C:0:G:75:T:0:N:0:O:4	A:0:C:0:G:163:T:1:N:0:O:0	2,30,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	164	28	20	0.06172839506172839	0.0	A:5:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:163:T:1:N:0:O:0	5,36,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	164	28	20	0.03225806451612903	0.0	A:2:C:0:G:57:T:0:N:0:O:3	A:0:C:0:G:163:T:1:N:0:O:0	1,13,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	164	28	20	0.02857142857142857	0.0	A:33:C:0:G:1:T:0:N:0:O:1	A:164:C:0:G:0:T:0:N:0:O:0	0,4,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	148	28	20	0.030612244897959183	0.0	A:0:C:3:G:0:T:86:N:0:O:9	A:0:C:0:G:0:T:148:N:0:O:0	3,38,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	148	28	20	0.028846153846153848	0.0	A:101:C:0:G:3:T:0:N:0:O:0	A:148:C:0:G:0:T:0:N:0:O:0	3,43,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	168	28	20	0.02040816326530612	0.0	A:2:C:0:G:93:T:0:N:0:O:3	A:0:C:0:G:168:T:0:N:0:O:0	2,54,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	177	28	20	0.02631578947368421	0.0	A:0:C:110:G:0:T:3:N:0:O:1	A:0:C:177:G:0:T:0:N:0:O:0	0,88,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	14805	C	T	T	17	accept high frequency variant	Pass	False	True	True	128	177	28	20	0.9765625	1.0	A:0:C:0:G:0:T:125:N:0:O:3	A:0:C:0:G:0:T:177:N:0:O:0	84,87,41,41	350.0	1292.8	yes	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	14914	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	177	28	20	0.019801980198019802	0.0	A:2:C:96:G:0:T:2:N:0:O:1	A:0:C:177:G:0:T:0:N:0:O:0	0,49,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	15011	A	C	A	16	ignore low frequency variant	Pass	False	False	True	116	177	28	20	0.02586206896551724	0.0	A:111:C:3:G:0:T:1:N:0:O:1	A:177:C:0:G:0:T:0:N:0:O:0	3,54,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	177	28	20	0.03125	0.0	A:3:C:0:G:91:T:0:N:0:O:2	A:0:C:0:G:177:T:0:N:0:O:0	3,34,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	66	177	28	20	0.030303030303030304	0.0	A:0:C:2:G:0:T:64:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,63,2,3	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	59	160	28	20	0.03389830508474576	0.0	A:2:C:1:G:0:T:45:N:0:O:11	A:0:C:0:G:0:T:160:N:0:O:0	0,30,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	160	28	20	0.1111111111111111	0.0	A:0:C:47:G:0:T:6:N:0:O:1	A:1:C:159:G:0:T:0:N:0:O:0	0,23,6,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	16050	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	160	28	20	0.024193548387096774	0.0	A:0:C:3:G:0:T:115:N:0:O:6	A:0:C:0:G:0:T:160:N:0:O:0	0,67,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	160	28	20	0.02830188679245283	0.0	A:0:C:102:G:0:T:3:N:0:O:1	A:0:C:160:G:0:T:0:N:0:O:0	0,62,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	178	28	20	0.024096385542168676	0.0	A:81:C:0:G:0:T:2:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	1,34,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	97	178	28	20	0.020618556701030927	0.0	A:0:C:95:G:2:T:0:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	2,37,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	193	28	20	0.03333333333333333	0.0	A:0:C:0:G:112:T:4:N:0:O:4	A:0:C:0:G:193:T:0:N:0:O:0	4,59,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	191	28	20	0.041666666666666664	0.0	A:4:C:0:G:90:T:0:N:0:O:2	A:0:C:0:G:189:T:2:N:0:O:0	4,29,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	16749	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	185	28	20	0.020202020202020204	0.0	A:90:C:2:G:0:T:0:N:0:O:7	A:185:C:0:G:0:T:0:N:0:O:0	1,41,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	157	28	20	0.021052631578947368	0.0	A:2:C:0:G:89:T:0:N:0:O:4	A:0:C:0:G:155:T:2:N:0:O:0	2,13,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	157	28	20	0.02127659574468085	0.0	A:0:C:0:G:2:T:88:N:0:O:4	A:0:C:0:G:0:T:157:N:0:O:0	0,47,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17010	C	A	A	17	accept high frequency variant	Pass	False	True	True	127	157	28	20	0.984251968503937	1.0	A:125:C:2:G:0:T:0:N:0:O:0	A:157:C:0:G:0:T:0:N:0:O:0	38,38,87,89	210.0	1636.8	yes	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	132	28	20	0.0196078431372549	0.0	A:1:C:0:G:49:T:0:N:0:O:1	A:0:C:0:G:128:T:4:N:0:O:0	1,6,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	132	28	20	0.06666666666666667	0.0	A:55:C:0:G:4:T:0:N:0:O:1	A:132:C:0:G:0:T:0:N:0:O:0	4,17,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	132	28	20	0.09722222222222222	0.0	A:7:C:1:G:0:T:60:N:0:O:4	A:0:C:0:G:0:T:132:N:0:O:0	7,26,0,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17201	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	132	28	20	0.019801980198019802	0.0	A:2:C:0:G:0:T:93:N:0:O:6	A:0:C:0:G:0:T:132:N:0:O:0	2,55,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	132	28	20	0.03409090909090909	0.0	A:85:C:0:G:3:T:0:N:0:O:0	A:132:C:0:G:0:T:0:N:0:O:0	3,47,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	120	28	20	0.02857142857142857	0.0	A:0:C:66:G:0:T:2:N:0:O:2	A:0:C:120:G:0:T:0:N:0:O:0	0,45,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	120	28	20	0.027522935779816515	0.0	A:3:C:0:G:106:T:0:N:0:O:0	A:0:C:0:G:120:T:0:N:0:O:0	3,25,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	120	28	20	0.06060606060606061	0.0	A:0:C:91:G:0:T:6:N:0:O:2	A:1:C:119:G:0:T:0:N:0:O:0	0,32,6,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	168	28	20	0.04477611940298507	0.0	A:0:C:63:G:0:T:3:N:0:O:1	A:0:C:168:G:0:T:0:N:0:O:0	0,42,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	168	28	20	0.03260869565217391	0.0	A:83:C:0:G:0:T:3:N:0:O:6	A:168:C:0:G:0:T:0:N:0:O:0	0,39,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	168	28	20	0.11818181818181818	0.0	A:13:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:168:T:0:N:0:O:0	0,58,13,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	168	28	20	0.027777777777777776	0.0	A:2:C:0:G:69:T:0:N:0:O:1	A:0:C:0:G:168:T:0:N:0:O:0	2,18,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	18252	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	125	28	20	0.023622047244094488	0.0	A:0:C:124:G:0:T:3:N:0:O:0	A:0:C:125:G:0:T:0:N:0:O:0	1,62,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	154	277	28	20	0.032467532467532464	0.0	A:5:C:0:G:148:T:0:N:0:O:1	A:0:C:0:G:276:T:1:N:0:O:0	5,14,0,140	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	166	28	20	0.02040816326530612	0.006024096385542169	A:0:C:0:G:2:T:96:N:0:O:0	A:0:C:0:G:1:T:165:N:0:O:0	2,39,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	18731	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	140	28	20	0.02040816326530612	0.0	A:2:C:0:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:140:N:0:O:0	2,32,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	140	28	20	0.05263157894736842	0.0	A:4:C:0:G:70:T:2:N:0:O:0	A:0:C:0:G:140:T:0:N:0:O:0	4,18,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	18735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	140	28	20	0.021739130434782608	0.0	A:40:C:0:G:1:T:0:N:0:O:5	A:140:C:0:G:0:T:0:N:0:O:0	1,19,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	18748	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	140	28	20	0.02631578947368421	0.0	A:0:C:3:G:0:T:111:N:0:O:0	A:0:C:0:G:0:T:139:N:0:O:1	0,58,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	174	28	20	0.027210884353741496	0.0	A:4:C:0:G:141:T:0:N:0:O:2	A:0:C:0:G:171:T:3:N:0:O:0	4,14,0,133	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	172	28	20	0.025	0.0	A:0:C:117:G:0:T:3:N:0:O:0	A:3:C:169:G:0:T:0:N:0:O:0	0,65,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19478	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	152	28	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:152:T:0:N:0:O:0	2,25,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	146	28	20	0.09859154929577464	0.0	A:0:C:64:G:0:T:7:N:0:O:0	A:0:C:146:G:0:T:0:N:0:O:0	0,54,7,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	19554	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	109	28	20	0.022222222222222223	0.0	A:0:C:84:G:0:T:2:N:0:O:4	A:1:C:108:G:0:T:0:N:0:O:0	0,37,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	109	28	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:109:T:0:N:0:O:0	2,31,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	160	158	28	20	0.01875	0.0	A:3:C:0:G:0:T:124:N:0:O:33	A:0:C:0:G:0:T:158:N:0:O:0	0,70,3,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	158	28	20	0.02040816326530612	0.0	A:96:C:0:G:0:T:2:N:0:O:0	A:158:C:0:G:0:T:0:N:0:O:0	0,62,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	158	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:91:N:0:O:3	A:0:C:0:G:0:T:158:N:0:O:0	0,62,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	187	28	20	0.033707865168539325	0.0	A:0:C:0:G:3:T:85:N:0:O:1	A:0:C:0:G:0:T:187:N:0:O:0	0,18,3,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	188	28	20	0.02127659574468085	0.0	A:0:C:89:G:0:T:2:N:0:O:3	A:1:C:187:G:0:T:0:N:0:O:0	0,26,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20133	C	T	C	7	mixed illumina variant	Check	False	False	True	110	188	28	20	0.5545454545454546	0.6276595744680851	A:0:C:43:G:0:T:61:N:0:O:6	A:0:C:70:G:0:T:118:N:0:O:0	15,32,46,78	.	.	mixed	.	.	mismatch(s)	mixed position	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	179	28	20	0.031746031746031744	0.0	A:4:C:0:G:116:T:0:N:0:O:6	A:0:C:0:G:179:T:0:N:0:O:0	4,77,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	172	159	28	20	0.023255813953488372	0.0	A:0:C:0:G:4:T:167:N:0:O:1	A:0:C:0:G:0:T:159:N:0:O:0	4,101,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	188	158	28	20	0.02127659574468085	0.0	A:184:C:0:G:4:T:0:N:0:O:0	A:158:C:0:G:0:T:0:N:0:O:0	3,135,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	181	159	28	20	0.022099447513812154	0.0	A:177:C:0:G:4:T:0:N:0:O:0	A:159:C:0:G:0:T:0:N:0:O:0	4,104,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	177	28	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	2,38,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	177	28	20	0.025	0.0	A:2:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:174:T:3:N:0:O:0	2,27,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	177	28	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	0,54,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	113	28	20	0.14285714285714285	0.017699115044247787	A:0:C:0:G:67:T:12:N:0:O:5	A:0:C:0:G:111:T:2:N:0:O:0	0,58,12,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	178	28	20	0.03896103896103896	0.0	A:0:C:74:G:0:T:3:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	0,46,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	178	28	20	0.023255813953488372	0.0	A:2:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:177:T:1:N:0:O:0	2,17,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	178	28	20	0.018018018018018018	0.0	A:2:C:0:G:0:T:93:N:0:O:16	A:0:C:0:G:0:T:178:N:0:O:0	0,80,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	21505	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	178	28	20	0.02	0.0	A:95:C:0:G:2:T:0:N:0:O:3	A:178:C:0:G:0:T:0:N:0:O:0	0,47,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	21575	C	T	T	10	mixed variant with conflicting illumina support	Check	False	True	True	78	177	28	20	0.44871794871794873	0.96045197740113	A:0:C:0:G:5:T:35:N:0:O:38	A:0:C:0:G:0:T:170:N:0:O:7	9,52,26,26	24.751	1424.4	yes	.	.	.	mixed position	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	156	144	28	20	0.038461538461538464	0.0	A:0:C:0:G:150:T:6:N:0:O:0	A:0:C:0:G:144:T:0:N:0:O:0	5,88,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	139	161	28	20	0.02877697841726619	0.0	A:0:C:0:G:4:T:135:N:0:O:0	A:0:C:0:G:0:T:161:N:0:O:0	4,60,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	163	28	20	0.031007751937984496	0.0	A:4:C:0:G:125:T:0:N:0:O:0	A:0:C:0:G:163:T:0:N:0:O:0	4,46,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	220	151	28	20	0.01818181818181818	0.0	A:0:C:0:G:4:T:174:N:0:O:42	A:0:C:0:G:0:T:150:N:0:O:1	0,117,4,103	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	22972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	150	28	20	0.02097902097902098	0.0	A:0:C:3:G:0:T:138:N:0:O:2	A:0:C:0:G:0:T:150:N:0:O:0	0,86,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	153	28	20	0.03278688524590164	0.0	A:59:C:0:G:2:T:0:N:0:O:0	A:153:C:0:G:0:T:0:N:0:O:0	0,27,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	153	28	20	0.02	0.006535947712418301	A:0:C:2:G:0:T:98:N:0:O:0	A:0:C:1:G:0:T:152:N:0:O:0	0,64,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	165	28	20	0.07407407407407407	0.0	A:6:C:0:G:71:T:0:N:0:O:4	A:0:C:0:G:162:T:3:N:0:O:0	6,22,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	157	28	20	0.035398230088495575	0.0	A:4:C:0:G:109:T:0:N:0:O:0	A:0:C:0:G:156:T:1:N:0:O:0	4,55,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	147	28	20	0.23809523809523808	0.0	A:0:C:48:G:0:T:15:N:0:O:0	A:0:C:147:G:0:T:0:N:0:O:0	0,32,15,31	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	147	28	20	0.03614457831325301	0.013605442176870748	A:0:C:3:G:0:T:80:N:0:O:0	A:0:C:2:G:0:T:145:N:0:O:0	0,31,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23904	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	146	28	20	0.02564102564102564	0.0	A:1:C:2:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:146:N:0:O:0	0,20,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	139	147	28	20	0.02158273381294964	0.0	A:136:C:0:G:0:T:3:N:0:O:0	A:147:C:0:G:0:T:0:N:0:O:0	3,27,0,112	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	146	28	20	0.03125	0.0	A:3:C:0:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:146:N:0:O:0	3,8,0,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	147	28	20	0.02	0.0	A:0:C:2:G:0:T:96:N:0:O:2	A:0:C:0:G:0:T:147:N:0:O:0	1,7,1,93	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	147	28	20	0.06896551724137931	0.0	A:0:C:54:G:0:T:4:N:0:O:0	A:1:C:146:G:0:T:0:N:0:O:0	0,27,4,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	147	28	20	0.045454545454545456	0.0	A:0:C:53:G:0:T:3:N:0:O:10	A:0:C:147:G:0:T:0:N:0:O:0	0,59,3,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	147	28	20	0.024691358024691357	0.0	A:2:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:147:T:0:N:0:O:0	2,12,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	148	28	20	0.023255813953488372	0.0	A:2:C:0:G:81:T:0:N:0:O:3	A:0:C:0:G:147:T:0:N:0:O:1	2,15,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	163	161	28	20	0.024539877300613498	0.0	A:4:C:154:G:0:T:3:N:0:O:2	A:0:C:161:G:0:T:0:N:0:O:0	4,76,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	161	28	20	0.02857142857142857	0.0	A:0:C:98:G:0:T:3:N:0:O:4	A:0:C:161:G:0:T:0:N:0:O:0	0,99,3,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	161	28	20	0.021505376344086023	0.006211180124223602	A:0:C:87:G:0:T:2:N:0:O:4	A:0:C:160:G:0:T:1:N:0:O:0	0,83,2,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	113	28	20	0.0297029702970297	0.0	A:3:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:113:T:0:N:0:O:0	0,80,3,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	113	28	20	0.020618556701030927	0.0	A:0:C:0:G:2:T:94:N:0:O:1	A:0:C:0:G:0:T:113:N:0:O:0	0,80,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	152	28	20	0.02	0.0	A:98:C:2:G:0:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	2,59,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	141	28	20	0.02727272727272727	0.0	A:107:C:0:G:0:T:3:N:0:O:0	A:141:C:0:G:0:T:0:N:0:O:0	3,41,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	140	28	20	0.043478260869565216	0.0	A:0:C:63:G:0:T:3:N:0:O:3	A:0:C:140:G:0:T:0:N:0:O:0	1,56,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	127	141	28	20	0.023622047244094488	0.0070921985815602835	A:3:C:110:G:0:T:0:N:0:O:14	A:1:C:140:G:0:T:0:N:0:O:0	3,59,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	155	28	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:155:N:0:O:0	0,65,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	74	155	28	20	0.02702702702702703	0.0	A:2:C:2:G:66:T:0:N:0:O:4	A:0:C:0:G:155:T:0:N:0:O:0	2,12,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	155	28	20	0.021505376344086023	0.0	A:0:C:85:G:0:T:2:N:0:O:6	A:0:C:155:G:0:T:0:N:0:O:0	2,45,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	155	28	20	0.04	0.0	A:5:C:77:G:0:T:0:N:0:O:43	A:0:C:155:G:0:T:0:N:0:O:0	5,36,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	54	155	28	20	0.07407407407407407	0.0	A:50:C:4:G:0:T:0:N:0:O:0	A:155:C:0:G:0:T:0:N:0:O:0	0,30,4,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	155	28	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:0:C:155:G:0:T:0:N:0:O:0	0,48,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	155	28	20	0.022988505747126436	0.0064516129032258064	A:1:C:84:G:0:T:2:N:0:O:0	A:0:C:154:G:0:T:1:N:0:O:0	0,48,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	155	28	20	0.020833333333333332	0.0	A:1:C:93:G:0:T:2:N:0:O:0	A:0:C:155:G:0:T:0:N:0:O:0	0,66,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	155	28	20	0.021052631578947368	0.0	A:93:C:0:G:2:T:0:N:0:O:0	A:155:C:0:G:0:T:0:N:0:O:0	2,30,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	155	28	20	0.07792207792207792	0.0	A:68:C:0:G:6:T:0:N:0:O:3	A:155:C:0:G:0:T:0:N:0:O:0	6,20,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26094	T	A	T	16	ignore low frequency variant	Pass	False	False	True	134	166	28	20	0.022388059701492536	0.0	A:3:C:0:G:0:T:117:N:0:O:14	A:0:C:0:G:0:T:166:N:0:O:0	0,88,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	166	28	20	0.0380952380952381	0.0	A:0:C:100:G:0:T:4:N:0:O:1	A:0:C:166:G:0:T:0:N:0:O:0	4,55,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26144	G	T	T	17	accept high frequency variant	Pass	False	True	True	131	166	28	20	1.0	1.0	A:0:C:0:G:0:T:131:N:0:O:0	A:0:C:0:G:0:T:166:N:0:O:0	86,86,45,45	205.463	1954.1	yes	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	26219	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	166	28	20	0.02666666666666667	0.0	A:73:C:0:G:2:T:0:N:0:O:0	A:166:C:0:G:0:T:0:N:0:O:0	0,46,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	160	28	20	0.01818181818181818	0.0	A:1:C:78:G:0:T:2:N:0:O:29	A:0:C:160:G:0:T:0:N:0:O:0	0,101,2,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	160	28	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:160:C:0:G:0:T:0:N:0:O:0	2,32,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	160	28	20	0.034482758620689655	0.0	A:3:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:160:T:0:N:0:O:0	3,30,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	286	28	20	0.01990049751243781	0.0	A:0:C:196:G:0:T:4:N:0:O:1	A:1:C:285:G:0:T:0:N:0:O:0	0,175,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26703	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	143	28	20	0.02830188679245283	0.0	A:102:C:0:G:3:T:0:N:0:O:1	A:143:C:0:G:0:T:0:N:0:O:0	3,54,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	143	28	20	0.09473684210526316	0.0	A:86:C:0:G:0:T:9:N:0:O:0	A:143:C:0:G:0:T:0:N:0:O:0	9,34,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	143	28	20	0.08333333333333333	0.0	A:6:C:0:G:66:T:0:N:0:O:0	A:0:C:0:G:143:T:0:N:0:O:0	6,9,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26744	T	A	T	16	ignore low frequency variant	Pass	False	False	True	137	143	28	20	0.021897810218978103	0.0	A:3:C:0:G:0:T:133:N:0:O:1	A:0:C:0:G:0:T:143:N:0:O:0	0,78,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26746	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	143	28	20	0.022727272727272728	0.0	A:0:C:0:G:129:T:3:N:0:O:0	A:0:C:0:G:143:T:0:N:0:O:0	0,93,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	143	28	20	0.03418803418803419	0.0	A:0:C:113:G:0:T:4:N:0:O:0	A:2:C:141:G:0:T:0:N:0:O:0	0,89,4,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	160	28	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:158:T:2:N:0:O:0	2,29,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	160	28	20	0.075	0.0	A:0:C:72:G:0:T:6:N:0:O:2	A:0:C:160:G:0:T:0:N:0:O:0	0,60,6,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	160	28	20	0.0375	0.00625	A:0:C:76:G:0:T:3:N:0:O:1	A:0:C:159:G:0:T:1:N:0:O:0	0,66,3,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	160	28	20	0.031496062992125984	0.0	A:121:C:0:G:4:T:0:N:0:O:2	A:160:C:0:G:0:T:0:N:0:O:0	4,62,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	158	28	20	0.020833333333333332	0.0	A:0:C:93:G:0:T:2:N:0:O:1	A:3:C:155:G:0:T:0:N:0:O:0	1,68,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	158	28	20	0.021052631578947368	0.0	A:91:C:0:G:2:T:0:N:0:O:2	A:158:C:0:G:0:T:0:N:0:O:0	2,31,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27540	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	187	28	20	0.030303030303030304	0.0	A:94:C:0:G:3:T:0:N:0:O:2	A:187:C:0:G:0:T:0:N:0:O:0	3,54,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	187	28	20	0.04225352112676056	0.0	A:67:C:0:G:3:T:0:N:0:O:1	A:187:C:0:G:0:T:0:N:0:O:0	3,35,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	187	28	20	0.06779661016949153	0.0	A:4:C:0:G:54:T:0:N:0:O:1	A:0:C:0:G:187:T:0:N:0:O:0	4,13,0,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	125	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:125:N:0:O:0	2,66,0,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28150	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	125	28	20	0.02127659574468085	0.0	A:2:C:0:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:125:N:0:O:0	2,65,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28588	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	165	28	20	0.03389830508474576	0.0	A:0:C:0:G:2:T:53:N:0:O:4	A:0:C:0:G:0:T:165:N:0:O:0	2,24,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28699	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	165	28	20	0.02666666666666667	0.0	A:73:C:2:G:0:T:0:N:0:O:0	A:165:C:0:G:0:T:0:N:0:O:0	2,54,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	214	28	20	0.022727272727272728	0.0	A:0:C:41:G:0:T:1:N:0:O:2	A:1:C:213:G:0:T:0:N:0:O:0	0,25,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28840	T	A	T	16	ignore low frequency variant	Pass	False	False	True	125	218	28	20	0.024	0.0	A:3:C:0:G:0:T:122:N:0:O:0	A:0:C:0:G:0:T:218:N:0:O:0	0,35,3,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	218	28	20	0.03	0.0	A:3:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:218:T:0:N:0:O:0	3,8,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	218	28	20	0.03296703296703297	0.0	A:0:C:87:G:0:T:3:N:0:O:1	A:0:C:218:G:0:T:0:N:0:O:0	0,28,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	213	28	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:213:G:0:T:0:N:0:O:0	0,28,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	314	28	20	0.036036036036036036	0.0	A:0:C:107:G:0:T:4:N:0:O:0	A:3:C:311:G:0:T:0:N:0:O:0	0,92,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	158	28	20	0.018867924528301886	0.0	A:0:C:98:G:0:T:2:N:0:O:6	A:0:C:158:G:0:T:0:N:0:O:0	0,65,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29111	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	158	28	20	0.02040816326530612	0.0	A:2:C:0:G:94:T:0:N:0:O:2	A:0:C:0:G:155:T:3:N:0:O:0	2,21,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29132	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	158	28	20	0.02040816326530612	0.0	A:0:C:0:G:95:T:2:N:0:O:1	A:0:C:0:G:158:T:0:N:0:O:0	0,45,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29194	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	158	28	20	0.035398230088495575	0.0	A:0:C:0:G:4:T:107:N:0:O:2	A:0:C:0:G:0:T:158:N:0:O:0	0,49,4,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	158	28	20	0.023255813953488372	0.006329113924050633	A:3:C:124:G:0:T:0:N:0:O:2	A:1:C:157:G:0:T:0:N:0:O:0	2,50,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	188	28	20	0.05084745762711865	0.0	A:55:C:0:G:3:T:0:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:0	0,5,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	246	82	28	20	0.024390243902439025	0.0	A:237:C:0:G:6:T:0:N:0:O:3	A:82:C:0:G:0:T:0:N:0:O:0	6,86,0,160	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00035	artic-pipeline	NB01	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00035	artic-pipeline	NB01	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	151	28	20	0.02127659574468085	0.0	A:0:C:46:G:0:T:1:N:0:O:0	A:0:C:151:G:0:T:0:N:0:O:0	0,10,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	157	28	20	0.04081632653061224	0.0	A:0:C:2:G:0:T:47:N:0:O:0	A:0:C:0:G:0:T:157:N:0:O:0	0,8,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	230	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	152	28	20	0.02	0.0	A:0:C:49:G:0:T:1:N:0:O:0	A:0:C:152:G:0:T:0:N:0:O:0	0,10,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	71	151	28	20	0.9436619718309859	1.0	A:0:C:0:G:0:T:67:N:0:O:4	A:0:C:0:G:0:T:151:N:0:O:0	11,15,56,56	279.237	1773.4	yes	.	.	.	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	304	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	151	28	20	0.020833333333333332	0.0	A:0:C:47:G:0:T:1:N:0:O:0	A:0:C:151:G:0:T:0:N:0:O:0	0,4,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	163	28	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:163:N:0:O:0	0,37,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	570	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	162	28	20	0.022388059701492536	0.0	A:125:C:0:G:3:T:0:N:0:O:6	A:162:C:0:G:0:T:0:N:0:O:0	2,33,1,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	160	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:160:N:0:O:0	0,33,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	141	28	20	0.022727272727272728	0.0	A:86:C:0:G:0:T:2:N:0:O:0	A:141:C:0:G:0:T:0:N:0:O:0	2,12,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	850	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	141	28	20	0.022058823529411766	0.0	A:3:C:131:G:0:T:0:N:0:O:2	A:0:C:141:G:0:T:0:N:0:O:0	0,61,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	141	28	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:141:N:0:O:0	1,59,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	178	28	20	0.038461538461538464	0.0	A:2:C:0:G:47:T:0:N:0:O:3	A:0:C:0:G:178:T:0:N:0:O:0	2,18,0,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	178	28	20	0.9857142857142858	1.0	A:0:C:2:G:0:T:138:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:0	107,109,31,31	210.0	1774.4	yes	.	.	.	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	178	28	20	0.02631578947368421	0.0	A:37:C:0:G:1:T:0:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	1,9,0,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	180	28	20	0.016129032258064516	0.0	A:1:C:0:G:47:T:0:N:0:O:14	A:0:C:0:G:178:T:0:N:0:O:2	1,22,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	178	28	20	0.0273972602739726	0.0	A:2:C:0:G:64:T:0:N:0:O:7	A:0:C:0:G:176:T:2:N:0:O:0	2,39,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	178	28	20	0.028985507246376812	0.0	A:2:C:0:G:66:T:0:N:0:O:1	A:0:C:0:G:177:T:1:N:0:O:0	2,41,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	333	28	20	0.05263157894736842	0.0	A:0:C:87:G:0:T:5:N:0:O:3	A:1:C:332:G:0:T:0:N:0:O:0	0,32,5,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	333	28	20	0.02586206896551724	0.009009009009009009	A:0:C:0:G:110:T:3:N:0:O:3	A:0:C:0:G:330:T:3:N:0:O:0	0,25,3,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1534	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	328	28	20	0.02127659574468085	0.0	A:0:C:0:G:90:T:2:N:0:O:2	A:0:C:0:G:328:T:0:N:0:O:0	0,33,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	108	187	28	20	0.027777777777777776	0.0053475935828877	A:3:C:77:G:0:T:1:N:0:O:27	A:1:C:185:G:0:T:0:N:0:O:1	0,55,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	186	28	20	0.03333333333333333	0.0	A:0:C:4:G:0:T:109:N:0:O:7	A:0:C:0:G:0:T:186:N:0:O:0	0,44,4,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	186	28	20	0.02586206896551724	0.0	A:0:C:3:G:0:T:113:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	1,44,2,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	185	28	20	0.03488372093023256	0.005405405405405406	A:83:C:0:G:3:T:0:N:0:O:0	A:184:C:0:G:1:T:0:N:0:O:0	1,10,2,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	186	28	20	0.018404907975460124	0.0	A:3:C:0:G:139:T:0:N:0:O:21	A:0:C:0:G:184:T:2:N:0:O:0	0,48,3,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	146	28	20	0.02586206896551724	0.0	A:3:C:0:G:109:T:1:N:0:O:3	A:0:C:0:G:146:T:0:N:0:O:0	3,38,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	184	28	20	0.043478260869565216	0.0	A:4:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	0,23,4,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	2557	A	G	A	16	ignore low frequency variant	Pass	False	False	True	281	342	28	20	0.021352313167259787	0.0	A:274:C:0:G:6:T:0:N:0:O:1	A:342:C:0:G:0:T:0:N:0:O:0	6,123,0,158	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	2910	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	156	28	20	0.02	0.0	A:2:C:89:G:0:T:0:N:0:O:9	A:0:C:156:G:0:T:0:N:0:O:0	1,36,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	117	156	28	20	0.6581196581196581	1.0	A:0:C:0:G:0:T:77:N:0:O:40	A:0:C:0:G:0:T:156:N:0:O:0	39,79,38,38	260.149	1491.6	yes	.	.	.	mixed position	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	3083	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	156	28	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:155:T:1:N:0:O:0	2,32,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	144	28	20	0.031914893617021274	0.0	A:1:C:3:G:0:T:90:N:0:O:0	A:1:C:0:G:0:T:143:N:0:O:0	0,43,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	144	28	20	0.023809523809523808	0.0	A:0:C:81:G:0:T:2:N:0:O:1	A:0:C:144:G:0:T:0:N:0:O:0	0,39,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	144	28	20	0.02127659574468085	0.0	A:45:C:0:G:1:T:0:N:0:O:1	A:144:C:0:G:0:T:0:N:0:O:0	1,4,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	153	28	20	0.041666666666666664	0.0	A:3:C:0:G:68:T:0:N:0:O:1	A:0:C:0:G:152:T:1:N:0:O:0	0,31,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3899	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	153	28	20	0.034482758620689655	0.0	A:56:C:0:G:2:T:0:N:0:O:0	A:153:C:0:G:0:T:0:N:0:O:0	0,37,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	153	28	20	0.0392156862745098	0.0	A:49:C:0:G:2:T:0:N:0:O:0	A:153:C:0:G:0:T:0:N:0:O:0	0,37,2,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	153	28	20	0.038461538461538464	0.0	A:0:C:49:G:0:T:2:N:0:O:1	A:0:C:153:G:0:T:0:N:0:O:0	0,40,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	153	28	20	0.05660377358490566	0.0	A:0:C:50:G:0:T:3:N:0:O:0	A:0:C:153:G:0:T:0:N:0:O:0	0,39,3,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	153	28	20	0.03296703296703297	0.0	A:0:C:3:G:0:T:87:N:0:O:1	A:0:C:0:G:0:T:153:N:0:O:0	0,43,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	153	28	20	0.025423728813559324	0.0	A:3:C:0:G:114:T:0:N:0:O:1	A:0:C:0:G:152:T:1:N:0:O:0	3,31,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3979	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	153	28	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:153:C:0:G:0:T:0:N:0:O:0	2,23,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	3980	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	153	28	20	0.027777777777777776	0.006535947712418301	A:2:C:0:G:70:T:0:N:0:O:0	A:1:C:0:G:152:T:0:N:0:O:0	2,26,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	112	28	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:110:T:1:N:0:O:1	1,23,1,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	112	28	20	0.02727272727272727	0.0	A:1:C:3:G:0:T:106:N:0:O:0	A:0:C:0:G:0:T:112:N:0:O:0	0,39,3,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	112	28	20	0.01818181818181818	0.0	A:0:C:49:G:0:T:1:N:0:O:5	A:0:C:112:G:0:T:0:N:0:O:0	0,37,1,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4322	T	C	T	1	near depth threshold	Alarm	False	False	True	29	112	28	20	0.034482758620689655	0.0	A:0:C:1:G:0:T:28:N:0:O:0	A:0:C:0:G:0:T:112:N:0:O:0	0,24,1,5	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	164	269	28	20	0.03048780487804878	0.0	A:0:C:0:G:153:T:5:N:0:O:6	A:0:C:0:G:269:T:0:N:0:O:0	0,123,5,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	168	150	28	20	0.023809523809523808	0.0	A:0:C:163:G:0:T:4:N:0:O:1	A:0:C:150:G:0:T:0:N:0:O:0	0,124,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4954	A	G	A	16	ignore low frequency variant	Pass	False	False	True	192	150	28	20	0.020833333333333332	0.0	A:183:C:0:G:4:T:0:N:0:O:5	A:150:C:0:G:0:T:0:N:0:O:0	4,98,0,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	4984	A	G	A	16	ignore low frequency variant	Pass	False	False	True	245	221	28	20	0.024489795918367346	0.0	A:237:C:0:G:6:T:1:N:0:O:1	A:221:C:0:G:0:T:0:N:0:O:0	6,98,0,147	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	65	116	28	20	0.046153846153846156	0.0	A:60:C:0:G:0:T:3:N:0:O:2	A:116:C:0:G:0:T:0:N:0:O:0	3,17,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	116	28	20	0.038461538461538464	0.0	A:0:C:72:G:0:T:3:N:0:O:3	A:1:C:115:G:0:T:0:N:0:O:0	3,28,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5141	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	116	28	20	0.022222222222222223	0.0	A:81:C:0:G:0:T:2:N:0:O:7	A:116:C:0:G:0:T:0:N:0:O:0	2,32,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	83	28	20	0.024390243902439025	0.0	A:76:C:0:G:2:T:0:N:0:O:4	A:83:C:0:G:0:T:0:N:0:O:0	1,57,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5338	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	181	28	20	0.02912621359223301	0.0	A:0:C:3:G:0:T:94:N:0:O:6	A:0:C:0:G:0:T:181:N:0:O:0	0,59,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	181	28	20	0.033707865168539325	0.0	A:86:C:0:G:3:T:0:N:0:O:0	A:181:C:0:G:0:T:0:N:0:O:0	3,38,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5473	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	181	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:86:N:0:O:1	A:0:C:0:G:0:T:181:N:0:O:0	2,45,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	181	28	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	2,39,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5550	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	181	28	20	0.02631578947368421	0.0	A:1:C:2:G:0:T:73:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	0,53,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5553	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	181	28	20	0.024096385542168676	0.0	A:78:C:0:G:2:T:0:N:0:O:3	A:181:C:0:G:0:T:0:N:0:O:0	2,41,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	183	28	20	0.08823529411764706	0.0	A:0:C:62:G:0:T:6:N:0:O:0	A:0:C:183:G:0:T:0:N:0:O:0	0,61,6,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5783	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	183	28	20	0.020833333333333332	0.0	A:92:C:0:G:0:T:2:N:0:O:2	A:183:C:0:G:0:T:0:N:0:O:0	2,42,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	183	28	20	0.028037383177570093	0.0	A:3:C:0:G:82:T:0:N:0:O:22	A:0:C:0:G:182:T:1:N:0:O:0	0,21,3,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	183	28	20	0.02830188679245283	0.0	A:102:C:0:G:3:T:0:N:0:O:1	A:183:C:0:G:0:T:0:N:0:O:0	0,64,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	172	28	20	0.125	0.0	A:0:C:76:G:0:T:11:N:0:O:1	A:0:C:172:G:0:T:0:N:0:O:0	0,63,11,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	172	28	20	0.02631578947368421	0.0	A:0:C:3:G:0:T:97:N:0:O:14	A:0:C:0:G:0:T:172:N:0:O:0	0,52,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	156	28	20	0.024390243902439025	0.0	A:0:C:119:G:0:T:3:N:0:O:1	A:0:C:156:G:0:T:0:N:0:O:0	0,79,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	156	28	20	0.03296703296703297	0.0	A:87:C:0:G:3:T:1:N:0:O:0	A:156:C:0:G:0:T:0:N:0:O:0	3,46,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	156	28	20	0.026143790849673203	0.0	A:0:C:144:G:0:T:4:N:0:O:5	A:0:C:155:G:1:T:0:N:0:O:0	0,81,4,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6387	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	156	28	20	0.022556390977443608	0.0	A:3:C:0:G:128:T:0:N:0:O:2	A:0:C:0:G:155:T:1:N:0:O:0	0,73,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	156	28	20	0.021739130434782608	0.0	A:1:C:133:G:0:T:3:N:0:O:1	A:0:C:156:G:0:T:0:N:0:O:0	0,73,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	100	28	20	0.046511627906976744	0.0	A:0:C:0:G:4:T:81:N:0:O:1	A:0:C:0:G:0:T:100:N:0:O:0	0,41,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	83	28	20	0.02830188679245283	0.0	A:3:C:0:G:101:T:0:N:0:O:2	A:0:C:0:G:83:T:0:N:0:O:0	3,41,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	194	172	28	20	0.03608247422680412	0.0	A:175:C:0:G:7:T:2:N:0:O:10	A:172:C:0:G:0:T:0:N:0:O:0	7,74,0,120	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	172	28	20	0.021505376344086023	0.0	A:0:C:172:G:0:T:4:N:0:O:10	A:0:C:172:G:0:T:0:N:0:O:0	0,123,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	223	176	28	20	0.02242152466367713	0.0	A:217:C:0:G:5:T:0:N:0:O:1	A:176:C:0:G:0:T:0:N:0:O:0	5,93,0,130	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	236	28	20	0.03571428571428571	0.0	A:3:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:236:T:0:N:0:O:0	3,32,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	172	28	20	0.08888888888888889	0.0	A:79:C:0:G:0:T:8:N:0:O:3	A:172:C:0:G:0:T:0:N:0:O:0	0,63,8,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	7034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	172	28	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:172:N:0:O:0	0,66,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	161	28	20	0.019801980198019802	0.006211180124223602	A:98:C:0:G:2:T:0:N:0:O:1	A:160:C:0:G:1:T:0:N:0:O:0	2,67,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	156	28	20	0.07017543859649122	0.0	A:4:C:0:G:51:T:0:N:0:O:2	A:0:C:0:G:155:T:1:N:0:O:0	4,13,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	156	28	20	0.022222222222222223	0.0	A:0:C:86:G:0:T:2:N:0:O:2	A:0:C:156:G:0:T:0:N:0:O:0	2,53,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	186	28	20	0.02912621359223301	0.0	A:100:C:0:G:3:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	3,27,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	186	28	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:90:N:0:O:1	A:0:C:0:G:0:T:186:N:0:O:0	0,56,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	8385	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	114	28	20	0.030303030303030304	0.0	A:96:C:3:G:0:T:0:N:0:O:0	A:114:C:0:G:0:T:0:N:0:O:0	3,32,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	123	28	20	0.023809523809523808	0.0	A:41:C:0:G:1:T:0:N:0:O:0	A:123:C:0:G:0:T:0:N:0:O:0	0,2,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	8470	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	123	28	20	0.022727272727272728	0.0	A:2:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:123:T:0:N:0:O:0	1,14,1,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	123	28	20	0.04395604395604396	0.0	A:0:C:4:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:123:N:0:O:0	0,54,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	89	28	20	0.03614457831325301	0.0	A:0:C:3:G:0:T:80:N:0:O:0	A:0:C:0:G:0:T:89:N:0:O:0	0,44,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	171	28	20	0.023255813953488372	0.0	A:0:C:84:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,57,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	8900	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	171	28	20	0.02040816326530612	0.0	A:2:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:171:T:0:N:0:O:0	2,37,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	137	160	28	20	0.029197080291970802	0.0	A:4:C:0:G:0:T:125:N:0:O:8	A:0:C:0:G:0:T:160:N:0:O:0	4,64,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	160	28	20	0.029411764705882353	0.00625	A:4:C:0:G:131:T:0:N:0:O:1	A:1:C:0:G:159:T:0:N:0:O:0	4,51,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	9246	C	T	N	2	allele in negative control	Alarm	False	False	False	110	184	28	20	0.045454545454545456	0.0	A:0:C:104:G:0:T:5:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,73,5,37	.	.	no	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	9249	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	184	28	20	0.022900763358778626	0.0	A:3:C:0:G:127:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	1,70,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	9429	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	184	28	20	0.03389830508474576	0.0	A:4:C:0:G:0:T:113:N:0:O:1	A:0:C:0:G:0:T:184:N:0:O:0	0,72,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	9430	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	184	28	20	0.02631578947368421	0.0	A:0:C:106:G:0:T:3:N:0:O:5	A:2:C:182:G:0:T:0:N:0:O:0	0,66,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	357	28	20	0.025157232704402517	0.0	A:1:C:4:G:0:T:153:N:0:O:1	A:0:C:0:G:0:T:357:N:0:O:0	0,142,4,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	10010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	116	28	20	0.021052631578947368	0.0	A:0:C:88:G:0:T:2:N:0:O:5	A:1:C:115:G:0:T:0:N:0:O:0	0,59,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	95	28	20	0.028037383177570093	0.0	A:3:C:0:G:104:T:0:N:0:O:0	A:0:C:0:G:94:T:1:N:0:O:0	3,35,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	172	28	20	0.03488372093023256	0.0	A:0:C:81:G:0:T:3:N:0:O:2	A:0:C:172:G:0:T:0:N:0:O:0	0,39,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	10469	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	172	28	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	0,41,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	10470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	172	28	20	0.031914893617021274	0.0	A:0:C:91:G:0:T:3:N:0:O:0	A:1:C:171:G:0:T:0:N:0:O:0	0,39,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	172	28	20	0.029411764705882353	0.0	A:0:C:1:G:0:T:33:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	0,30,1,4	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	172	28	20	0.02040816326530612	0.005813953488372093	A:0:C:0:G:95:T:2:N:0:O:1	A:0:C:0:G:171:T:1:N:0:O:0	2,34,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	165	28	20	0.07920792079207921	0.0	A:0:C:0:G:8:T:89:N:0:O:4	A:1:C:0:G:0:T:164:N:0:O:0	0,51,8,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11083	G	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	40	166	28	20	0.625	0.8614457831325302	A:0:C:0:G:0:T:25:N:0:O:15	A:0:C:0:G:0:T:143:N:0:O:23	5,20,20,20	69.416	586.7	yes	.	.	.	mixed position	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	179	28	20	0.020202020202020204	0.0	A:1:C:0:G:2:T:92:N:0:O:4	A:0:C:0:G:0:T:179:N:0:O:0	1,27,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	179	28	20	0.02040816326530612	0.0	A:0:C:0:G:95:T:2:N:0:O:1	A:0:C:0:G:179:T:0:N:0:O:0	2,32,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11192	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	179	28	20	0.02564102564102564	0.0	A:0:C:2:G:0:T:75:N:0:O:1	A:0:C:0:G:0:T:179:N:0:O:0	0,32,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11208	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	179	28	20	0.020618556701030927	0.0	A:0:C:94:G:0:T:2:N:0:O:1	A:0:C:179:G:0:T:0:N:0:O:0	0,34,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11301	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	171	28	20	0.017543859649122806	0.0	A:0:C:2:G:0:T:91:N:0:O:21	A:0:C:0:G:0:T:171:N:0:O:0	0,47,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	217	28	20	0.024390243902439025	0.0	A:80:C:0:G:0:T:2:N:0:O:0	A:217:C:0:G:0:T:0:N:0:O:0	2,51,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11608	A	G	A	16	ignore low frequency variant	Pass	False	False	True	186	202	28	20	0.026881720430107527	0.0	A:178:C:0:G:5:T:0:N:0:O:3	A:202:C:0:G:0:T:0:N:0:O:0	5,99,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	206	170	28	20	0.019417475728155338	0.0058823529411764705	A:0:C:0:G:127:T:4:N:0:O:75	A:0:C:0:G:169:T:1:N:0:O:0	0,82,4,124	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	170	28	20	0.05555555555555555	0.0	A:51:C:0:G:3:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	0,34,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	11996	A	T	A	16	ignore low frequency variant	Pass	False	False	True	66	170	28	20	0.030303030303030304	0.0	A:64:C:0:G:0:T:2:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	0,41,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	170	28	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	1,45,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	171	28	20	0.020202020202020204	0.0	A:0:C:75:G:0:T:2:N:0:O:22	A:0:C:170:G:0:T:0:N:0:O:1	0,70,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	123	28	20	0.04716981132075472	0.0	A:5:C:100:G:0:T:0:N:0:O:1	A:0:C:123:G:0:T:0:N:0:O:0	0,64,5,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12523	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	123	28	20	0.026785714285714284	0.0	A:0:C:3:G:1:T:107:N:0:O:1	A:0:C:0:G:0:T:123:N:0:O:0	0,69,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	123	28	20	0.04504504504504504	0.0	A:0:C:5:G:0:T:104:N:0:O:2	A:0:C:0:G:0:T:123:N:0:O:0	2,70,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12672	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	123	28	20	0.022222222222222223	0.0	A:0:C:86:G:0:T:2:N:0:O:2	A:0:C:123:G:0:T:0:N:0:O:0	2,38,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	123	28	20	0.05263157894736842	0.0	A:0:C:71:G:0:T:4:N:0:O:1	A:0:C:123:G:0:T:0:N:0:O:0	0,59,4,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12847	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	130	28	20	0.01904761904761905	0.0	A:2:C:1:G:0:T:97:N:0:O:5	A:0:C:0:G:0:T:130:N:0:O:0	0,60,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	130	28	20	0.036585365853658534	0.0	A:0:C:77:G:0:T:3:N:0:O:2	A:0:C:130:G:0:T:0:N:0:O:0	2,33,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	130	28	20	0.02702702702702703	0.0	A:3:C:0:G:106:T:0:N:0:O:2	A:0:C:0:G:130:T:0:N:0:O:0	3,35,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	130	28	20	0.024390243902439025	0.0	A:114:C:0:G:3:T:0:N:0:O:6	A:130:C:0:G:0:T:0:N:0:O:0	3,37,0,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	130	28	20	0.023529411764705882	0.0	A:0:C:83:G:0:T:2:N:0:O:0	A:0:C:130:G:0:T:0:N:0:O:0	0,57,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	285	28	20	0.04225352112676056	0.0	A:0:C:67:G:1:T:3:N:0:O:0	A:1:C:284:G:0:T:0:N:0:O:0	0,63,3,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	285	28	20	0.022222222222222223	0.0	A:2:C:0:G:83:T:0:N:0:O:5	A:0:C:0:G:285:T:0:N:0:O:0	2,35,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	285	28	20	0.022988505747126436	0.0	A:85:C:0:G:2:T:0:N:0:O:0	A:285:C:0:G:0:T:0:N:0:O:0	2,32,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13541	C	G	C	16	ignore low frequency variant	Pass	False	False	True	115	287	28	20	0.017391304347826087	0.0	A:0:C:93:G:2:T:0:N:0:O:20	A:0:C:284:G:0:T:0:N:0:O:3	0,62,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	279	28	20	0.02564102564102564	0.0	A:0:C:2:G:0:T:76:N:0:O:0	A:0:C:0:G:0:T:279:N:0:O:0	0,40,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	211	28	20	0.023529411764705882	0.004739336492890996	A:2:C:82:G:0:T:0:N:0:O:1	A:1:C:210:G:0:T:0:N:0:O:0	2,37,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	209	28	20	0.03260869565217391	0.0	A:88:C:0:G:3:T:1:N:0:O:0	A:209:C:0:G:0:T:0:N:0:O:0	3,39,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	196	28	20	0.0392156862745098	0.0	A:4:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:195:T:1:N:0:O:0	4,55,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	196	28	20	0.023809523809523808	0.0	A:2:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	2,45,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13785	A	C	A	16	ignore low frequency variant	Pass	False	False	True	111	196	28	20	0.02702702702702703	0.0	A:108:C:3:G:0:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	3,69,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13806	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	196	28	20	0.023255813953488372	0.0	A:0:C:83:G:0:T:2:N:0:O:1	A:0:C:196:G:0:T:0:N:0:O:0	1,44,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	196	28	20	0.02564102564102564	0.0	A:35:C:0:G:1:T:0:N:0:O:3	A:196:C:0:G:0:T:0:N:0:O:0	0,8,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	13970	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	148	28	20	0.02857142857142857	0.0	A:102:C:0:G:3:T:0:N:0:O:0	A:148:C:0:G:0:T:0:N:0:O:0	3,44,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	148	28	20	0.028037383177570093	0.0	A:104:C:0:G:3:T:0:N:0:O:0	A:148:C:0:G:0:T:0:N:0:O:0	3,51,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	177	28	20	0.028985507246376812	0.0	A:0:C:65:G:0:T:2:N:0:O:2	A:2:C:175:G:0:T:0:N:0:O:0	0,51,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	14392	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	177	28	20	0.0410958904109589	0.0	A:0:C:3:G:0:T:68:N:0:O:2	A:0:C:0:G:0:T:177:N:0:O:0	0,46,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	82	177	28	20	1.0	1.0	A:0:C:0:G:0:T:82:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	43,43,39,39	324.952	1228.2	yes	.	.	.	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	14478	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	177	28	20	0.0449438202247191	0.0	A:2:C:83:G:0:T:4:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	0,47,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	167	28	20	0.02912621359223301	0.0	A:3:C:0:G:100:T:0:N:0:O:0	A:0:C:0:G:167:T:0:N:0:O:0	3,50,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	174	28	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:174:T:0:N:0:O:0	2,47,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	14885	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	174	28	20	0.02459016393442623	0.0	A:3:C:0:G:119:T:0:N:0:O:0	A:0:C:0:G:174:T:0:N:0:O:0	3,72,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	184	28	20	0.03333333333333333	0.0	A:2:C:0:G:57:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	2,21,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	184	28	20	0.024691358024691357	0.0	A:0:C:2:G:0:T:76:N:0:O:3	A:0:C:0:G:0:T:184:N:0:O:0	0,75,2,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15145	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	184	28	20	0.02127659574468085	0.0	A:90:C:0:G:2:T:0:N:0:O:2	A:183:C:0:G:0:T:1:N:0:O:0	1,52,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	152	28	20	0.025	0.0	A:0:C:3:G:0:T:117:N:0:O:0	A:0:C:0:G:0:T:152:N:0:O:0	0,65,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	195	28	20	0.023255813953488372	0.0	A:3:C:0:G:126:T:0:N:0:O:0	A:0:C:0:G:188:T:7:N:0:O:0	3,74,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15594	G	A	A	13	new position validated by illumina	Pass	False	True	True	151	195	28	20	0.9933774834437086	1.0	A:150:C:0:G:1:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	95,95,55,56	280.0	1365.0	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15616	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	194	28	20	0.02459016393442623	0.0	A:118:C:0:G:3:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	3,59,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15657	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	195	28	20	0.023809523809523808	0.0	A:123:C:0:G:3:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	3,69,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15693	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	195	28	20	0.022900763358778626	0.0	A:128:C:0:G:3:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	3,70,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	164	28	20	0.06896551724137931	0.0	A:0:C:51:G:0:T:4:N:0:O:3	A:0:C:164:G:0:T:0:N:0:O:0	0,40,4,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	164	28	20	0.03787878787878788	0.0	A:0:C:124:G:0:T:5:N:0:O:3	A:0:C:164:G:0:T:0:N:0:O:0	0,89,5,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	16422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	89	28	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:89:C:0:G:0:T:0:N:0:O:0	2,48,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	31	28	20	0.022988505747126436	0.0	A:0:C:0:G:2:T:82:N:0:O:3	A:0:C:0:G:0:T:31:N:0:O:0	1,14,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	31	28	20	0.03278688524590164	0.0	A:0:C:0:G:114:T:4:N:0:O:4	A:0:C:0:G:31:T:0:N:0:O:0	2,45,2,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	36	28	20	0.027522935779816515	0.0	A:0:C:3:G:0:T:105:N:0:O:1	A:0:C:0:G:0:T:36:N:0:O:0	0,53,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	211	28	20	0.02857142857142857	0.0	A:0:C:0:G:3:T:96:N:0:O:6	A:0:C:3:G:0:T:208:N:0:O:0	0,54,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	212	28	20	0.025210084033613446	0.0	A:0:C:98:G:0:T:3:N:0:O:18	A:0:C:212:G:0:T:0:N:0:O:0	1,53,2,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	173	323	28	20	0.05202312138728324	0.0	A:9:C:0:G:161:T:0:N:0:O:3	A:0:C:0:G:322:T:1:N:0:O:0	9,32,0,141	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	174	303	28	20	0.022988505747126436	0.0	A:0:C:169:G:0:T:4:N:0:O:1	A:0:C:303:G:0:T:0:N:0:O:0	2,74,2,100	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	200	298	28	20	0.035	0.0	A:192:C:0:G:7:T:0:N:0:O:1	A:298:C:0:G:0:T:0:N:0:O:0	7,64,0,136	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	131	28	20	0.04054054054054054	0.0	A:69:C:0:G:3:T:0:N:0:O:2	A:131:C:0:G:0:T:0:N:0:O:0	3,14,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	131	28	20	0.02666666666666667	0.0	A:2:C:0:G:0:T:69:N:0:O:4	A:0:C:0:G:0:T:131:N:0:O:0	2,17,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	131	28	20	0.02857142857142857	0.0	A:102:C:0:G:3:T:0:N:0:O:0	A:131:C:0:G:0:T:0:N:0:O:0	3,52,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	135	28	20	0.05063291139240506	0.0	A:1:C:73:G:0:T:4:N:0:O:1	A:0:C:135:G:0:T:0:N:0:O:0	0,61,4,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	135	28	20	0.03571428571428571	0.0	A:3:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:135:T:0:N:0:O:0	3,21,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17571	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	135	28	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:94:N:0:O:1	A:0:C:0:G:0:T:135:N:0:O:0	0,62,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	135	28	20	0.02912621359223301	0.0	A:0:C:100:G:0:T:3:N:0:O:0	A:0:C:135:G:0:T:0:N:0:O:0	0,63,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	135	28	20	0.02	0.0	A:0:C:2:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:135:N:0:O:0	0,63,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	135	28	20	0.022727272727272728	0.0	A:0:C:86:G:0:T:2:N:0:O:0	A:0:C:135:G:0:T:0:N:0:O:0	0,50,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	139	28	20	0.027777777777777776	0.0	A:0:C:3:G:0:T:103:N:0:O:2	A:0:C:0:G:0:T:139:N:0:O:0	2,59,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	139	28	20	0.06666666666666667	0.0	A:7:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:139:T:0:N:0:O:0	0,57,7,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	198	273	28	20	0.025252525252525252	0.0	A:5:C:0:G:193:T:0:N:0:O:0	A:0:C:0:G:273:T:0:N:0:O:0	5,79,0,119	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	18031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	190	264	28	20	0.021052631578947368	0.0	A:186:C:0:G:4:T:0:N:0:O:0	A:264:C:0:G:0:T:0:N:0:O:0	4,66,0,124	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	302	28	20	0.034013605442176874	0.0	A:5:C:0:G:140:T:0:N:0:O:2	A:0:C:0:G:300:T:2:N:0:O:0	5,15,0,132	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	175	28	20	0.025	0.0	A:0:C:117:G:0:T:3:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,65,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	175	28	20	0.024193548387096774	0.0	A:0:C:0:G:121:T:3:N:0:O:0	A:1:C:0:G:174:T:0:N:0:O:0	0,66,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	162	28	20	0.025	0.0	A:38:C:0:G:0:T:1:N:0:O:1	A:162:C:0:G:0:T:0:N:0:O:0	0,16,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	162	28	20	0.0380952380952381	0.0	A:0:C:0:G:4:T:101:N:0:O:0	A:0:C:0:G:0:T:162:N:0:O:0	4,41,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	38	28	20	0.03896103896103896	0.0	A:3:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:38:T:0:N:0:O:0	3,27,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	19445	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	40	28	20	0.02531645569620253	0.0	A:76:C:0:G:2:T:0:N:0:O:1	A:40:C:0:G:0:T:0:N:0:O:0	2,51,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	37	28	20	0.06666666666666667	0.0	A:0:C:56:G:0:T:4:N:0:O:0	A:0:C:37:G:0:T:0:N:0:O:0	0,51,4,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	37	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:37:N:0:O:0	0,65,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	173	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:92:N:0:O:2	A:0:C:0:G:0:T:173:N:0:O:0	0,61,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	19868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	317	28	20	0.02040816326530612	0.0	A:0:C:191:G:0:T:4:N:0:O:1	A:0:C:317:G:0:T:0:N:0:O:0	0,84,4,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	179	28	20	0.020833333333333332	0.0	A:0:C:1:G:0:T:47:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,19,1,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	240	28	20	0.036585365853658534	0.0	A:77:C:0:G:3:T:0:N:0:O:2	A:240:C:0:G:0:T:0:N:0:O:0	3,36,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	149	185	28	20	0.026845637583892617	0.0	A:0:C:0:G:4:T:145:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	4,73,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	185	28	20	0.027972027972027972	0.0	A:139:C:0:G:4:T:0:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	4,71,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	179	28	20	0.03260869565217391	0.0	A:86:C:0:G:3:T:0:N:0:O:3	A:179:C:0:G:0:T:0:N:0:O:0	3,24,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	20970	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	179	28	20	0.02702702702702703	0.0	A:0:C:108:G:0:T:3:N:0:O:0	A:1:C:178:G:0:T:0:N:0:O:0	0,60,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	179	28	20	0.050505050505050504	0.0	A:5:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	5,33,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21137	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	213	28	20	0.02	0.004694835680751174	A:145:C:0:G:3:T:0:N:0:O:2	A:212:C:0:G:1:T:0:N:0:O:0	1,65,2,85	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	43	28	20	0.1276595744680851	0.0	A:0:C:0:G:75:T:12:N:0:O:7	A:0:C:0:G:43:T:0:N:0:O:0	1,63,11,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	89	28	20	0.029411764705882353	0.0	A:0:C:99:G:0:T:3:N:0:O:0	A:0:C:89:G:0:T:0:N:0:O:0	0,62,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	77	28	20	0.024096385542168676	0.0	A:0:C:79:G:0:T:2:N:0:O:2	A:4:C:73:G:0:T:0:N:0:O:0	0,56,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	213	28	20	0.056179775280898875	0.0	A:5:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:213:T:0:N:0:O:0	5,18,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	149	28	20	0.041666666666666664	0.0	A:0:C:127:G:0:T:6:N:0:O:11	A:0:C:149:G:0:T:0:N:0:O:0	4,41,2,103	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	149	28	20	0.02857142857142857	0.0	A:0:C:129:G:0:T:4:N:0:O:7	A:1:C:148:G:0:T:0:N:0:O:0	0,120,4,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	21788	A	G	A	16	ignore low frequency variant	Pass	False	False	True	181	149	28	20	0.022099447513812154	0.0	A:177:C:0:G:4:T:0:N:0:O:0	A:149:C:0:G:0:T:0:N:0:O:0	3,95,1,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	149	28	20	0.02040816326530612	0.0	A:4:C:0:G:175:T:0:N:0:O:17	A:0:C:0:G:148:T:1:N:0:O:0	4,85,0,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	21891	T	A	T	16	ignore low frequency variant	Pass	False	False	True	186	149	28	20	0.021505376344086023	0.0	A:4:C:0:G:0:T:180:N:0:O:2	A:0:C:0:G:0:T:149:N:0:O:0	0,101,4,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	157	28	20	0.022388059701492536	0.0	A:3:C:0:G:131:T:0:N:0:O:0	A:0:C:0:G:155:T:2:N:0:O:0	3,79,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	149	156	28	20	0.04697986577181208	0.0	A:0:C:0:G:7:T:142:N:0:O:0	A:0:C:0:G:0:T:156:N:0:O:0	7,80,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	22488	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	211	28	20	0.023255813953488372	0.0	A:84:C:0:G:2:T:0:N:0:O:0	A:211:C:0:G:0:T:0:N:0:O:0	2,45,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	238	261	28	20	0.02100840336134454	0.007662835249042145	A:0:C:0:G:232:T:5:N:0:O:1	A:0:C:0:G:259:T:2:N:0:O:0	0,156,5,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	140	28	20	0.02185792349726776	0.0	A:0:C:157:G:0:T:4:N:0:O:22	A:0:C:140:G:0:T:0:N:0:O:0	2,154,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	222	140	28	20	0.03153153153153153	0.0	A:0:C:7:G:0:T:215:N:0:O:0	A:0:C:0:G:0:T:140:N:0:O:0	0,145,7,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23299	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	162	28	20	0.02857142857142857	0.0	A:100:C:1:G:0:T:3:N:0:O:1	A:162:C:0:G:0:T:0:N:0:O:0	3,53,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	118	162	28	20	0.9576271186440678	1.0	A:0:C:0:G:113:T:0:N:0:O:5	A:0:C:0:G:162:T:0:N:0:O:0	67,72,46,46	269.929	1698.3	yes	.	.	.	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	23420	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	162	28	20	0.020202020202020204	0.0	A:2:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:162:T:0:N:0:O:0	2,61,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	162	28	20	0.030927835051546393	0.0	A:94:C:0:G:3:T:0:N:0:O:0	A:162:C:0:G:0:T:0:N:0:O:0	3,44,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	166	28	20	0.06521739130434782	0.0	A:6:C:0:G:83:T:0:N:0:O:3	A:0:C:0:G:166:T:0:N:0:O:0	6,20,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	132	28	20	0.11267605633802817	0.0	A:0:C:63:G:0:T:8:N:0:O:0	A:0:C:132:G:0:T:0:N:0:O:0	0,53,8,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	133	28	20	0.021739130434782608	0.0	A:135:C:0:G:0:T:3:N:0:O:0	A:133:C:0:G:0:T:0:N:0:O:0	3,54,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	133	28	20	0.03409090909090909	0.0	A:3:C:0:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:133:N:0:O:0	3,17,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	124	28	20	0.028169014084507043	0.0	A:0:C:58:G:0:T:2:N:0:O:11	A:0:C:124:G:0:T:0:N:0:O:0	0,62,2,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	124	28	20	0.031578947368421054	0.016129032258064516	A:0:C:0:G:90:T:3:N:0:O:2	A:0:C:0:G:122:T:2:N:0:O:0	0,46,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	151	28	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:150:C:0:G:0:T:1:N:0:O:0	2,56,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	24791	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	151	28	20	0.02040816326530612	0.0	A:95:C:0:G:2:T:0:N:0:O:1	A:151:C:0:G:0:T:0:N:0:O:0	2,69,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	151	28	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:151:C:0:G:0:T:0:N:0:O:0	2,65,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	51	151	28	20	0.0784313725490196	0.0	A:0:C:4:G:0:T:45:N:0:O:2	A:0:C:0:G:0:T:151:N:0:O:0	3,44,1,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	25062	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	165	28	20	0.023809523809523808	0.0	A:0:C:0:G:81:T:2:N:0:O:1	A:0:C:0:G:165:T:0:N:0:O:0	1,45,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	164	28	20	0.022222222222222223	0.0	A:0:C:1:G:2:T:87:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	2,60,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	155	28	20	0.02	0.0	A:93:C:0:G:2:T:0:N:0:O:5	A:155:C:0:G:0:T:0:N:0:O:0	2,29,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	155	28	20	0.06976744186046512	0.0	A:0:C:76:G:0:T:6:N:0:O:4	A:1:C:154:G:0:T:0:N:0:O:0	0,66,6,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	25554	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	155	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:155:N:0:O:0	1,48,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	120	155	28	20	0.9833333333333333	1.0	A:2:C:0:G:0:T:118:N:0:O:0	A:0:C:0:G:0:T:155:N:0:O:0	58,58,60,62	210.0	1968.2	yes	.	.	.	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	25592	A	G	A	1	near depth threshold	Alarm	False	False	True	24	155	28	20	0.041666666666666664	0.0	A:22:C:0:G:1:T:0:N:0:O:1	A:155:C:0:G:0:T:0:N:0:O:0	1,4,0,20	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	152	28	20	0.03614457831325301	0.0	A:3:C:1:G:79:T:0:N:0:O:0	A:0:C:0:G:151:T:1:N:0:O:0	3,12,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25785	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	152	28	20	0.020833333333333332	0.0	A:2:C:0:G:90:T:0:N:0:O:4	A:0:C:0:G:150:T:2:N:0:O:0	1,44,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	152	28	20	0.078125	0.0	A:58:C:5:G:0:T:0:N:0:O:1	A:152:C:0:G:0:T:0:N:0:O:0	0,36,5,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	152	28	20	0.023255813953488372	0.0	A:0:C:84:G:0:T:2:N:0:O:0	A:2:C:150:G:0:T:0:N:0:O:0	0,46,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25809	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	152	28	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	2,40,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	152	28	20	0.03296703296703297	0.0	A:0:C:88:G:0:T:3:N:0:O:0	A:0:C:152:G:0:T:0:N:0:O:0	0,53,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25840	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	152	28	20	0.037037037037037035	0.006578947368421052	A:0:C:104:G:0:T:4:N:0:O:0	A:0:C:151:G:0:T:1:N:0:O:0	0,54,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	152	28	20	0.02857142857142857	0.0	A:100:C:0:G:3:T:0:N:0:O:2	A:152:C:0:G:0:T:0:N:0:O:0	3,23,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25881	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	152	28	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	2,20,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	152	28	20	0.036585365853658534	0.0	A:75:C:0:G:3:T:0:N:0:O:4	A:151:C:1:G:0:T:0:N:0:O:0	3,16,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	152	28	20	0.04040404040404041	0.0	A:95:C:0:G:4:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	4,26,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	152	28	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:151:T:1:N:0:O:0	2,21,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	26074	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	213	28	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:212:T:1:N:0:O:0	2,65,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	26154	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	214	28	20	0.024096385542168676	0.0	A:71:C:0:G:2:T:0:N:0:O:10	A:213:C:0:G:0:T:0:N:0:O:1	2,30,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	153	28	20	0.02142857142857143	0.0	A:0:C:100:G:0:T:3:N:0:O:37	A:0:C:153:G:0:T:0:N:0:O:0	0,121,3,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	153	28	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:153:T:0:N:0:O:0	2,51,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	26542	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	153	28	20	0.02586206896551724	0.0	A:1:C:111:G:0:T:3:N:0:O:1	A:0:C:153:G:0:T:0:N:0:O:0	0,84,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	145	28	20	0.03409090909090909	0.0	A:81:C:0:G:1:T:3:N:0:O:3	A:145:C:0:G:0:T:0:N:0:O:0	3,36,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	145	28	20	0.12698412698412698	0.0	A:8:C:0:G:55:T:0:N:0:O:0	A:0:C:0:G:144:T:1:N:0:O:0	8,12,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	145	28	20	0.0196078431372549	0.0	A:0:C:98:G:0:T:2:N:0:O:2	A:0:C:145:G:0:T:0:N:0:O:0	0,80,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	158	28	20	0.0273972602739726	0.0	A:2:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:158:T:0:N:0:O:0	2,13,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	158	28	20	0.03896103896103896	0.0	A:0:C:74:G:0:T:3:N:0:O:0	A:0:C:158:G:0:T:0:N:0:O:0	0,41,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	27428	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	153	28	20	0.025974025974025976	0.0	A:0:C:2:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:153:N:0:O:0	0,47,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	153	28	20	0.020833333333333332	0.0	A:2:C:0:G:92:T:0:N:0:O:2	A:0:C:0:G:153:T:0:N:0:O:0	1,18,1,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	165	28	20	0.02631578947368421	0.0	A:72:C:0:G:2:T:0:N:0:O:2	A:164:C:0:G:0:T:0:N:0:O:1	2,34,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	174	28	20	0.027522935779816515	0.0	A:3:C:0:G:106:T:0:N:0:O:0	A:0:C:0:G:170:T:4:N:0:O:0	3,40,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	174	28	20	0.02727272727272727	0.0	A:107:C:0:G:3:T:0:N:0:O:0	A:174:C:0:G:0:T:0:N:0:O:0	3,40,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	145	28	20	0.0273972602739726	0.0	A:2:C:0:G:0:T:67:N:0:O:4	A:0:C:0:G:0:T:145:N:0:O:0	0,30,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28292	C	A	C	16	ignore low frequency variant	Pass	False	False	True	87	146	28	20	0.022988505747126436	0.0	A:2:C:81:G:0:T:1:N:0:O:3	A:0:C:146:G:0:T:0:N:0:O:0	0,62,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28506	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	155	28	20	0.022988505747126436	0.0	A:2:C:0:G:83:T:0:N:0:O:2	A:0:C:0:G:154:T:1:N:0:O:0	1,54,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28508	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	155	28	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:155:C:0:G:0:T:0:N:0:O:0	1,55,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	155	28	20	0.05194805194805195	0.0	A:0:C:71:G:0:T:4:N:0:O:2	A:1:C:154:G:0:T:0:N:0:O:0	2,54,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	153	28	20	0.02631578947368421	0.0	A:0:C:72:G:0:T:2:N:0:O:2	A:0:C:153:G:0:T:0:N:0:O:0	0,25,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	153	28	20	0.02531645569620253	0.0	A:0:C:77:G:0:T:2:N:0:O:0	A:0:C:153:G:0:T:0:N:0:O:0	0,22,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	153	28	20	0.023529411764705882	0.0	A:2:C:0:G:80:T:0:N:0:O:3	A:0:C:0:G:153:T:0:N:0:O:0	0,6,2,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	152	28	20	0.03389830508474576	0.0	A:0:C:2:G:0:T:57:N:0:O:0	A:0:C:0:G:0:T:152:N:0:O:0	0,22,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29021	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	314	28	20	0.02112676056338028	0.0	A:0:C:3:G:0:T:137:N:0:O:2	A:0:C:0:G:0:T:314:N:0:O:0	0,110,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	314	28	20	0.020833333333333332	0.0	A:0:C:141:G:0:T:3:N:0:O:0	A:2:C:312:G:0:T:0:N:0:O:0	0,113,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	180	28	20	0.036585365853658534	0.0	A:3:C:0:G:76:T:0:N:0:O:3	A:0:C:0:G:180:T:0:N:0:O:0	3,6,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	180	28	20	0.021897810218978103	0.0	A:0:C:3:G:0:T:134:N:0:O:0	A:0:C:0:G:0:T:180:N:0:O:0	0,87,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29330	C	T	C	16	ignore low frequency variant	Pass	False	False	True	245	327	28	20	0.02857142857142857	0.0	A:0:C:237:G:0:T:7:N:0:O:1	A:2:C:325:G:0:T:0:N:0:O:0	0,152,7,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	154	28	20	0.06666666666666667	0.0	A:41:C:1:G:3:T:0:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	2,2,1,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	155	28	20	0.03125	0.0	A:3:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:155:T:0:N:0:O:0	2,14,1,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	155	28	20	0.01904761904761905	0.0	A:2:C:0:G:94:T:0:N:0:O:9	A:0:C:0:G:152:T:3:N:0:O:0	2,20,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	235	38	28	20	0.02127659574468085	0.0	A:229:C:0:G:5:T:0:N:0:O:1	A:38:C:0:G:0:T:0:N:0:O:0	5,96,0,139	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	96	48	28	20	0.03125	0.0	A:0:C:3:G:88:T:0:N:0:O:5	A:0:C:0:G:48:T:0:N:0:O:0	3,28,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00036	artic-pipeline	NB02	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	311	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00036	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	142	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	180	28	20	0.02702702702702703	0.0	A:2:C:0:G:0:T:60:N:0:O:12	A:0:C:0:G:0:T:180:N:0:O:0	0,9,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	158	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	187	28	20	0.029850746268656716	0.0	A:64:C:0:G:2:T:0:N:0:O:1	A:187:C:0:G:0:T:0:N:0:O:0	2,10,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	186	28	20	0.025	0.0	A:0:C:1:G:0:T:39:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	0,12,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	187	28	20	0.024390243902439025	0.0	A:0:C:1:G:0:T:40:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	0,11,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	191	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	187	28	20	0.025	0.0	A:1:C:0:G:0:T:39:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	1,10,0,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	193	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	187	28	20	0.023255813953488372	0.0	A:1:C:41:G:0:T:1:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,6,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	227	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	185	28	20	0.021739130434782608	0.0	A:1:C:0:G:43:T:1:N:0:O:1	A:0:C:0:G:185:T:0:N:0:O:0	1,3,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	53	181	28	20	0.9811320754716981	1.0	A:0:C:0:G:0:T:52:N:0:O:1	A:0:C:0:G:0:T:181:N:0:O:0	11,12,41,41	69.237	1604.1	yes	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	181	28	20	0.022222222222222223	0.0	A:1:C:0:G:43:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	0,4,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	316	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	181	28	20	0.022727272727272728	0.0	A:0:C:1:G:0:T:43:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	0,9,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	167	28	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	0,52,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	169	28	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:88:N:0:O:4	A:0:C:0:G:0:T:169:N:0:O:0	2,22,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	172	28	20	0.023622047244094488	0.0	A:122:C:0:G:3:T:0:N:0:O:2	A:172:C:0:G:0:T:0:N:0:O:0	3,35,0,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	123	171	28	20	0.024390243902439025	0.0	A:0:C:0:G:120:T:3:N:0:O:0	A:1:C:0:G:170:T:0:N:0:O:0	0,45,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	167	28	20	0.02142857142857143	0.0	A:127:C:0:G:3:T:0:N:0:O:10	A:167:C:0:G:0:T:0:N:0:O:0	0,66,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	168	28	20	0.025423728813559324	0.0	A:1:C:3:G:0:T:112:N:0:O:2	A:0:C:0:G:0:T:168:N:0:O:0	0,56,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	672	A	G	A	16	ignore low frequency variant	Pass	False	False	True	191	287	28	20	0.020942408376963352	0.0	A:187:C:0:G:4:T:0:N:0:O:0	A:287:C:0:G:0:T:0:N:0:O:0	1,52,3,139	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	160	28	20	0.02631578947368421	0.0	A:74:C:0:G:0:T:2:N:0:O:0	A:160:C:0:G:0:T:0:N:0:O:0	2,16,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	160	28	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:160:G:0:T:0:N:0:O:0	0,53,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	160	28	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:160:G:0:T:0:N:0:O:0	0,50,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	162	188	28	20	0.9753086419753086	1.0	A:0:C:2:G:0:T:158:N:0:O:2	A:0:C:0:G:0:T:188:N:0:O:0	118,120,40,42	280.0	2145.4	yes	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	190	28	20	0.02631578947368421	0.0	A:2:C:0:G:62:T:0:N:0:O:12	A:0:C:0:G:187:T:1:N:0:O:2	2,26,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	188	28	20	0.021739130434782608	0.005319148936170213	A:2:C:0:G:82:T:0:N:0:O:8	A:1:C:0:G:185:T:2:N:0:O:0	2,44,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1342	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	48	28	20	0.024691358024691357	0.0	A:0:C:73:G:0:T:2:N:0:O:6	A:0:C:48:G:0:T:0:N:0:O:0	0,29,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1460	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	91	28	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:91:C:0:G:0:T:0:N:0:O:0	2,34,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	80	46	28	20	0.0375	0.0	A:0:C:71:G:3:T:0:N:0:O:6	A:0:C:46:G:0:T:0:N:0:O:0	2,32,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	195	28	20	0.021505376344086023	0.0	A:2:C:0:G:87:T:0:N:0:O:4	A:0:C:0:G:195:T:0:N:0:O:0	2,9,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	195	28	20	0.07476635514018691	0.0	A:0:C:8:G:0:T:95:N:0:O:4	A:0:C:0:G:0:T:195:N:0:O:0	0,38,8,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	195	28	20	0.037383177570093455	0.0	A:4:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	0,28,4,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	195	28	20	0.02127659574468085	0.0	A:3:C:0:G:125:T:0:N:0:O:13	A:0:C:0:G:194:T:1:N:0:O:0	2,54,1,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	195	28	20	0.034782608695652174	0.0	A:110:C:0:G:4:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	0,45,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	2184	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	171	28	20	0.025	0.0	A:153:C:0:G:4:T:0:N:0:O:3	A:171:C:0:G:0:T:0:N:0:O:0	4,59,0,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	171	28	20	0.04666666666666667	0.0	A:7:C:0:G:143:T:0:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	7,41,0,109	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	140	28	20	0.03	0.0	A:3:C:0:G:95:T:0:N:0:O:2	A:0:C:0:G:140:T:0:N:0:O:0	0,26,3,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	204	28	20	0.02127659574468085	0.0	A:3:C:0:G:136:T:0:N:0:O:2	A:0:C:0:G:204:T:0:N:0:O:0	3,72,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	175	204	28	20	0.022857142857142857	0.0	A:165:C:0:G:4:T:0:N:0:O:6	A:204:C:0:G:0:T:0:N:0:O:0	4,114,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	204	28	20	0.023952095808383235	0.0	A:0:C:160:G:0:T:4:N:0:O:3	A:1:C:203:G:0:T:0:N:0:O:0	0,162,4,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	184	28	20	0.025	0.0	A:78:C:2:G:0:T:0:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	0,26,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	191	28	20	0.03333333333333333	0.0	A:0:C:3:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	2,33,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	123	224	28	20	0.6097560975609756	0.9955357142857143	A:0:C:1:G:0:T:75:N:0:O:47	A:0:C:0:G:0:T:223:N:0:O:1	36,83,39,40	253.134	1373.5	yes	.	.	.	mixed position	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	174	28	20	0.02127659574468085	0.011494252873563218	A:0:C:0:G:75:T:2:N:0:O:17	A:0:C:0:G:172:T:2:N:0:O:0	0,67,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	155	166	28	20	0.01935483870967742	0.0	A:142:C:0:G:3:T:0:N:0:O:10	A:166:C:0:G:0:T:0:N:0:O:0	3,45,0,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	166	28	20	0.04040404040404041	0.0	A:0:C:90:G:0:T:4:N:0:O:5	A:0:C:166:G:0:T:0:N:0:O:0	0,48,4,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	3416	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	166	28	20	0.020833333333333332	0.0	A:46:C:0:G:1:T:0:N:0:O:1	A:166:C:0:G:0:T:0:N:0:O:0	1,10,0,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	185	28	20	0.05	0.0	A:0:C:76:G:0:T:4:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,65,4,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3701	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	185	28	20	0.022988505747126436	0.0	A:0:C:0:G:83:T:2:N:0:O:2	A:0:C:0:G:185:T:0:N:0:O:0	1,35,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	146	28	20	0.020618556701030927	0.0	A:0:C:0:G:2:T:77:N:0:O:18	A:0:C:0:G:0:T:146:N:0:O:0	0,36,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	147	28	20	0.05	0.0	A:4:C:0:G:74:T:0:N:0:O:2	A:0:C:0:G:145:T:2:N:0:O:0	0,39,4,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	147	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:147:N:0:O:0	0,54,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	3980	G	T	G	16	ignore low frequency variant	Pass	False	False	True	82	148	28	20	0.024390243902439025	0.0	A:0:C:0:G:78:T:2:N:0:O:2	A:0:C:0:G:147:T:0:N:0:O:1	2,41,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	123	28	20	0.02	0.0	A:0:C:46:G:0:T:1:N:0:O:3	A:1:C:122:G:0:T:0:N:0:O:0	0,38,1,12	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	123	28	20	0.023809523809523808	0.0	A:0:C:1:G:0:T:41:N:0:O:0	A:0:C:0:G:0:T:123:N:0:O:0	0,39,1,3	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	169	292	28	20	0.023668639053254437	0.00684931506849315	A:0:C:0:G:150:T:4:N:0:O:15	A:0:C:0:G:290:T:2:N:0:O:0	0,150,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	184	28	20	0.028169014084507043	0.0	A:0:C:137:G:0:T:4:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,107,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5042	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	33	28	20	0.023255813953488372	0.0	A:0:C:84:G:0:T:2:N:0:O:0	A:0:C:33:G:0:T:0:N:0:O:0	2,51,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	68	41	28	20	0.029411764705882353	0.0	A:0:C:0:G:65:T:2:N:0:O:1	A:0:C:0:G:41:T:0:N:0:O:0	2,35,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	30	28	20	0.125	0.0	A:62:C:0:G:9:T:0:N:0:O:1	A:30:C:0:G:0:T:0:N:0:O:0	6,35,3,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5284	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	30	28	20	0.06666666666666667	0.0	A:0:C:67:G:0:T:5:N:0:O:3	A:0:C:30:G:0:T:0:N:0:O:0	4,44,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	56	28	20	0.05172413793103448	0.0	A:3:C:0:G:54:T:0:N:0:O:1	A:0:C:0:G:56:T:0:N:0:O:0	3,14,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	5313	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	56	28	20	0.023255813953488372	0.0	A:0:C:2:G:0:T:75:N:0:O:9	A:0:C:0:G:0:T:56:N:0:O:0	0,59,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	69	28	20	0.02531645569620253	0.0	A:77:C:0:G:2:T:0:N:0:O:0	A:69:C:0:G:0:T:0:N:0:O:0	2,31,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5442	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	69	28	20	0.04918032786885246	0.0	A:3:C:0:G:58:T:0:N:0:O:0	A:0:C:0:G:69:T:0:N:0:O:0	2,20,1,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5501	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	67	28	20	0.04878048780487805	0.0	A:39:C:0:G:2:T:0:N:0:O:0	A:67:C:0:G:0:T:0:N:0:O:0	2,4,0,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	59	28	20	0.023809523809523808	0.0	A:2:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:59:T:0:N:0:O:0	2,37,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	186	28	20	0.07575757575757576	0.0	A:0:C:61:G:0:T:5:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,56,5,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	186	28	20	0.02631578947368421	0.0	A:0:C:2:G:0:T:74:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	0,46,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5821	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	186	28	20	0.026785714285714284	0.0	A:108:C:0:G:3:T:0:N:0:O:1	A:186:C:0:G:0:T:0:N:0:O:0	3,43,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	186	28	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:186:N:0:O:0	0,44,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	265	28	20	0.03333333333333333	0.0	A:0:C:84:G:0:T:3:N:0:O:3	A:0:C:265:G:0:T:0:N:0:O:0	0,66,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	264	28	20	0.02857142857142857	0.0	A:0:C:3:G:0:T:93:N:0:O:9	A:0:C:0:G:0:T:264:N:0:O:0	2,56,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	164	28	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,57,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	164	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:94:N:0:O:2	A:0:C:0:G:0:T:164:N:0:O:0	0,70,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	164	28	20	0.02040816326530612	0.0	A:0:C:91:G:0:T:2:N:0:O:5	A:4:C:160:G:0:T:0:N:0:O:0	0,68,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	164	28	20	0.025974025974025976	0.0	A:2:C:0:G:74:T:0:N:0:O:1	A:0:C:0:G:163:T:1:N:0:O:0	2,27,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	39	28	20	0.02564102564102564	0.0	A:75:C:0:G:2:T:0:N:0:O:1	A:39:C:0:G:0:T:0:N:0:O:0	2,27,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	47	28	20	0.031914893617021274	0.0	A:0:C:89:G:0:T:3:N:0:O:2	A:0:C:47:G:0:T:0:N:0:O:0	0,68,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	47	28	20	0.0196078431372549	0.0	A:96:C:0:G:2:T:0:N:0:O:4	A:47:C:0:G:0:T:0:N:0:O:0	2,53,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	47	28	20	0.03508771929824561	0.0	A:0:C:55:G:0:T:2:N:0:O:0	A:0:C:47:G:0:T:0:N:0:O:0	2,38,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	47	28	20	0.022727272727272728	0.0	A:0:C:0:G:2:T:81:N:0:O:5	A:0:C:0:G:0:T:47:N:0:O:0	0,59,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6733	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	44	28	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:44:C:0:G:0:T:0:N:0:O:0	2,55,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	182	40	28	20	0.038461538461538464	0.0	A:165:C:0:G:7:T:2:N:0:O:8	A:40:C:0:G:0:T:0:N:0:O:0	6,85,1,97	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	40	28	20	0.022857142857142857	0.0	A:0:C:164:G:0:T:4:N:0:O:7	A:0:C:40:G:0:T:0:N:0:O:0	0,118,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	48	28	20	0.021897810218978103	0.0	A:3:C:0:G:129:T:0:N:0:O:5	A:0:C:0:G:48:T:0:N:0:O:0	3,76,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6849	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	35	28	20	0.021052631578947368	0.0	A:0:C:90:G:0:T:2:N:0:O:3	A:0:C:35:G:0:T:0:N:0:O:0	0,49,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	36	28	20	0.03	0.0	A:97:C:0:G:3:T:0:N:0:O:0	A:36:C:0:G:0:T:0:N:0:O:0	3,35,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	37	28	20	0.023255813953488372	0.0	A:0:C:0:G:124:T:3:N:0:O:2	A:0:C:0:G:37:T:0:N:0:O:0	1,74,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	25	28	20	0.08695652173913043	0.0	A:82:C:0:G:0:T:8:N:0:O:2	A:25:C:0:G:0:T:0:N:0:O:0	0,64,8,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	187	28	20	0.021739130434782608	0.0	A:2:C:0:G:88:T:0:N:0:O:2	A:0:C:1:G:186:T:0:N:0:O:0	2,30,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	83	28	20	0.041666666666666664	0.0	A:89:C:0:G:4:T:0:N:0:O:3	A:83:C:0:G:0:T:0:N:0:O:0	4,27,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	7855	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	83	28	20	0.025210084033613446	0.0	A:0:C:3:G:0:T:115:N:0:O:1	A:0:C:0:G:0:T:83:N:0:O:0	0,53,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	7938	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	67	28	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:0:C:67:G:0:T:0:N:0:O:0	0,62,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	245	28	20	0.021052631578947368	0.0	A:92:C:0:G:2:T:0:N:0:O:1	A:245:C:0:G:0:T:0:N:0:O:0	1,16,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	160	28	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:160:N:0:O:0	0,68,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	44	28	20	0.023809523809523808	0.0	A:0:C:2:G:1:T:80:N:0:O:1	A:0:C:0:G:0:T:44:N:0:O:0	1,46,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	44	28	20	0.021052631578947368	0.0	A:93:C:0:G:0:T:2:N:0:O:0	A:44:C:0:G:0:T:0:N:0:O:0	2,38,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8565	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	29	28	20	0.037383177570093455	0.0	A:103:C:0:G:0:T:4:N:0:O:0	A:29:C:0:G:0:T:0:N:0:O:0	0,59,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	29	28	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:106:N:0:O:4	A:0:C:0:G:0:T:29:N:0:O:0	0,63,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8591	G	T	G	16	ignore low frequency variant	Pass	False	False	True	70	28	28	20	0.02857142857142857	0.0	A:0:C:0:G:67:T:2:N:0:O:1	A:0:C:0:G:28:T:0:N:0:O:0	2,49,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	59	28	20	0.07352941176470588	0.01694915254237288	A:5:C:1:G:60:T:0:N:0:O:2	A:1:C:0:G:58:T:0:N:0:O:0	5,7,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	8896	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	53	28	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:53:N:0:O:0	0,63,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	157	170	28	20	0.03184713375796178	0.0	A:5:C:0:G:0:T:141:N:0:O:11	A:0:C:0:G:0:T:170:N:0:O:0	5,65,0,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	179	170	28	20	0.027932960893854747	0.0	A:5:C:0:G:173:T:0:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	5,67,0,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	124	28	20	0.03125	0.0	A:0:C:93:G:0:T:3:N:0:O:0	A:0:C:124:G:0:T:0:N:0:O:0	0,51,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	9633	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	131	28	20	0.02631578947368421	0.0	A:2:C:0:G:0:T:72:N:0:O:2	A:0:C:0:G:0:T:131:N:0:O:0	0,44,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	263	28	20	0.04081632653061224	0.0	A:0:C:2:G:0:T:47:N:0:O:0	A:0:C:0:G:0:T:263:N:0:O:0	2,45,0,4	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10248	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	178	28	20	0.019801980198019802	0.0	A:98:C:2:G:0:T:0:N:0:O:1	A:178:C:0:G:0:T:0:N:0:O:0	0,42,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	178	28	20	0.022988505747126436	0.0	A:2:C:0:G:83:T:0:N:0:O:2	A:0:C:0:G:178:T:0:N:0:O:0	2,16,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	273	28	20	0.036585365853658534	0.0	A:0:C:78:G:0:T:3:N:0:O:1	A:2:C:271:G:0:T:0:N:0:O:0	0,47,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	273	28	20	0.027777777777777776	0.0	A:70:C:0:G:2:T:0:N:0:O:0	A:273:C:0:G:0:T:0:N:0:O:0	2,20,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	179	356	28	20	0.027932960893854747	0.0	A:0:C:5:G:0:T:174:N:0:O:0	A:0:C:0:G:0:T:356:N:0:O:0	0,103,5,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	186	28	20	0.03614457831325301	0.0	A:0:C:3:G:0:T:73:N:0:O:7	A:0:C:0:G:0:T:186:N:0:O:0	0,49,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	189	28	20	0.04	0.0	A:0:C:96:G:0:T:4:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,53,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	187	28	20	0.02702702702702703	0.0053475935828877	A:3:C:102:G:0:T:0:N:0:O:6	A:1:C:186:G:0:T:0:N:0:O:0	2,47,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11051	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	183	28	20	0.02654867256637168	0.0	A:3:C:109:G:0:T:0:N:0:O:1	A:0:C:183:G:0:T:0:N:0:O:0	3,69,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	188	28	20	0.0125	0.0	A:0:C:84:G:0:T:2:N:0:O:74	A:1:C:183:G:0:T:0:N:0:O:4	2,160,0,0	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	11081	T	G	T	1	near depth threshold	Alarm	False	False	True	29	180	28	20	0.06896551724137931	0.0	A:0:C:0:G:2:T:26:N:0:O:1	A:0:C:0:G:0:T:180:N:0:O:0	2,11,0,18	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	184	28	20	0.030612244897959183	0.0	A:0:C:92:G:0:T:3:N:0:O:3	A:0:C:184:G:0:T:0:N:0:O:0	0,79,3,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	11513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	121	28	20	0.023255813953488372	0.0	A:83:C:0:G:2:T:0:N:0:O:1	A:121:C:0:G:0:T:0:N:0:O:0	2,48,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	24	28	20	0.07058823529411765	0.0	A:0:C:78:G:0:T:6:N:0:O:1	A:0:C:24:G:0:T:0:N:0:O:0	0,53,6,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11707	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	29	28	20	0.020833333333333332	0.0	A:93:C:0:G:2:T:0:N:0:O:1	A:29:C:0:G:0:T:0:N:0:O:0	2,43,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	29	28	20	0.028037383177570093	0.0	A:104:C:0:G:0:T:3:N:0:O:0	A:29:C:0:G:0:T:0:N:0:O:0	3,49,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11800	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	29	28	20	0.04	0.0	A:4:C:0:G:94:T:2:N:0:O:0	A:0:C:0:G:29:T:0:N:0:O:0	0,54,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11801	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	29	28	20	0.028846153846153848	0.0	A:3:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:29:T:0:N:0:O:0	0,57,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	11802	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	29	28	20	0.030927835051546393	0.0	A:3:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:29:T:0:N:0:O:0	0,57,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11810	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	29	28	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:29:T:0:N:0:O:0	1,45,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11889	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	21	28	20	0.021052631578947368	0.0	A:0:C:0:G:2:T:93:N:0:O:0	A:0:C:0:G:0:T:21:N:0:O:0	2,42,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	208	185	28	20	0.03365384615384615	0.005405405405405406	A:0:C:0:G:130:T:7:N:0:O:71	A:0:C:0:G:184:T:1:N:0:O:0	0,76,7,132	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	185	28	20	0.09090909090909091	0.0	A:60:C:0:G:6:T:0:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	0,42,6,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	12333	C	G	C	16	ignore low frequency variant	Pass	False	False	True	151	160	28	20	0.019867549668874173	0.0	A:0:C:123:G:3:T:0:N:0:O:25	A:0:C:160:G:0:T:0:N:0:O:0	3,59,0,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	160	28	20	0.04716981132075472	0.0	A:0:C:5:G:1:T:100:N:0:O:0	A:0:C:0:G:0:T:160:N:0:O:0	0,50,5,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12383	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	160	28	20	0.05555555555555555	0.0	A:0:C:6:G:0:T:102:N:0:O:0	A:0:C:0:G:0:T:160:N:0:O:0	0,52,6,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	160	28	20	0.04081632653061224	0.0	A:4:C:0:G:90:T:0:N:0:O:4	A:0:C:0:G:157:T:3:N:0:O:0	4,20,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12527	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	143	28	20	0.022900763358778626	0.0	A:127:C:0:G:3:T:0:N:0:O:1	A:142:C:0:G:0:T:1:N:0:O:0	3,55,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	143	28	20	0.037037037037037035	0.0	A:76:C:0:G:3:T:1:N:0:O:1	A:143:C:0:G:0:T:0:N:0:O:0	3,37,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	143	28	20	0.02727272727272727	0.0	A:0:C:106:G:0:T:3:N:0:O:1	A:2:C:141:G:0:T:0:N:0:O:0	0,67,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	143	28	20	0.022988505747126436	0.0	A:0:C:84:G:0:T:2:N:0:O:1	A:0:C:143:G:0:T:0:N:0:O:0	0,65,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	128	28	20	0.025423728813559324	0.0	A:114:C:0:G:3:T:0:N:0:O:1	A:128:C:0:G:0:T:0:N:0:O:0	3,40,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	128	28	20	0.03669724770642202	0.0	A:0:C:105:G:0:T:4:N:0:O:0	A:0:C:128:G:0:T:0:N:0:O:0	0,61,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	244	134	28	20	0.020491803278688523	0.0	A:5:C:1:G:0:T:223:N:0:O:15	A:0:C:0:G:0:T:134:N:0:O:0	5,90,0,154	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	47	28	20	0.06493506493506493	0.0	A:0:C:71:G:0:T:5:N:0:O:1	A:0:C:47:G:0:T:0:N:0:O:0	0,70,5,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	47	28	20	0.04819277108433735	0.0	A:4:C:0:G:74:T:0:N:0:O:5	A:0:C:0:G:47:T:0:N:0:O:0	4,36,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	47	28	20	0.028985507246376812	0.0	A:2:C:0:G:66:T:0:N:0:O:1	A:0:C:0:G:47:T:0:N:0:O:0	2,29,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	183	28	20	0.021052631578947368	0.0	A:0:C:89:G:0:T:2:N:0:O:4	A:0:C:183:G:0:T:0:N:0:O:0	0,64,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	14392	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	183	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,61,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	94	183	28	20	0.9893617021276596	1.0	A:0:C:1:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	52,53,41,41	253.79	1309.5	yes	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	183	28	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	3,43,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	14546	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	183	28	20	0.019801980198019802	0.0	A:97:C:0:G:2:T:0:N:0:O:2	A:183:C:0:G:0:T:0:N:0:O:0	2,39,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	14654	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	185	28	20	0.0234375	0.005405405405405406	A:0:C:3:G:0:T:125:N:0:O:0	A:0:C:1:G:0:T:184:N:0:O:0	0,86,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	14728	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	185	28	20	0.038834951456310676	0.0	A:98:C:0:G:1:T:4:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	3,62,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	59	28	20	0.021052631578947368	0.0	A:93:C:0:G:2:T:0:N:0:O:0	A:59:C:0:G:0:T:0:N:0:O:0	2,48,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	79	28	20	0.054945054945054944	0.0	A:5:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:79:T:0:N:0:O:0	5,33,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	73	28	20	0.047619047619047616	0.0	A:0:C:4:G:0:T:76:N:0:O:4	A:0:C:0:G:0:T:73:N:0:O:0	0,67,4,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	158	28	20	0.02459016393442623	0.0	A:0:C:3:G:0:T:118:N:0:O:1	A:0:C:0:G:0:T:158:N:0:O:0	0,72,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	195	28	20	0.026785714285714284	0.0	A:0:C:0:G:109:T:3:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	0,69,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	187	28	20	0.0625	0.0	A:1:C:57:G:0:T:4:N:0:O:2	A:0:C:187:G:0:T:0:N:0:O:0	0,37,4,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	15955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	186	28	20	0.023809523809523808	0.0	A:2:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	1,58,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	187	28	20	0.018867924528301886	0.0	A:2:C:0:G:94:T:0:N:0:O:10	A:0:C:0:G:187:T:0:N:0:O:0	2,20,0,86	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	187	28	20	0.056	0.0	A:0:C:116:G:0:T:7:N:0:O:2	A:1:C:186:G:0:T:0:N:0:O:0	0,84,7,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	13	28	20	0.023529411764705882	0.0	A:0:C:0:G:80:T:2:N:0:O:3	A:0:C:0:G:13:T:0:N:0:O:0	1,42,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	16744	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	14	28	20	0.043010752688172046	0.0	A:4:C:0:G:86:T:0:N:0:O:3	A:0:C:0:G:14:T:0:N:0:O:0	3,41,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	202	28	20	0.0891089108910891	0.0	A:0:C:0:G:9:T:90:N:0:O:2	A:0:C:3:G:0:T:199:N:0:O:0	0,45,9,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	202	28	20	0.03680981595092025	0.0	A:6:C:0:G:121:T:1:N:0:O:35	A:0:C:0:G:202:T:0:N:0:O:0	0,56,6,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	202	28	20	0.02531645569620253	0.0	A:76:C:0:G:2:T:0:N:0:O:1	A:202:C:0:G:0:T:0:N:0:O:0	1,26,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	150	28	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:150:C:0:G:0:T:0:N:0:O:0	2,40,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	137	28	20	0.04597701149425287	0.0	A:0:C:82:G:0:T:4:N:0:O:1	A:0:C:137:G:0:T:0:N:0:O:0	0,67,4,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	137	28	20	0.020202020202020204	0.0	A:2:C:0:G:96:T:1:N:0:O:0	A:0:C:0:G:137:T:0:N:0:O:0	2,30,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	137	28	20	0.03333333333333333	0.0	A:0:C:86:G:0:T:3:N:0:O:1	A:0:C:137:G:0:T:0:N:0:O:0	0,47,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	175	28	20	0.020833333333333332	0.0	A:140:C:0:G:3:T:0:N:0:O:1	A:175:C:0:G:0:T:0:N:0:O:0	3,72,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	175	28	20	0.046875	0.0	A:0:C:61:G:0:T:3:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,44,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	175	28	20	0.01834862385321101	0.0	A:94:C:0:G:1:T:2:N:0:O:12	A:175:C:0:G:0:T:0:N:0:O:0	0,46,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	175	28	20	0.06956521739130435	0.0	A:8:C:0:G:107:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	0,68,8,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	175	28	20	0.029850746268656716	0.0	A:2:C:0:G:64:T:0:N:0:O:1	A:0:C:0:G:175:T:0:N:0:O:0	2,14,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	164	28	20	0.0392156862745098	0.0	A:0:C:96:G:0:T:4:N:0:O:2	A:0:C:164:G:0:T:0:N:0:O:0	0,57,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	254	28	20	0.02857142857142857	0.0	A:0:C:96:G:0:T:3:N:0:O:6	A:2:C:252:G:0:T:0:N:0:O:0	3,27,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	176	28	20	0.027777777777777776	0.0	A:32:C:0:G:1:T:1:N:0:O:2	A:176:C:0:G:0:T:0:N:0:O:0	1,14,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	176	28	20	0.020833333333333332	0.0	A:0:C:0:G:2:T:94:N:0:O:0	A:0:C:0:G:0:T:176:N:0:O:0	0,40,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	176	28	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:176:N:0:O:0	0,56,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	220	28	20	0.024193548387096774	0.0	A:3:C:0:G:119:T:0:N:0:O:2	A:0:C:0:G:218:T:2:N:0:O:0	3,27,0,97	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19305	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	2	28	20	0.05	0.0	A:2:C:0:G:0:T:38:N:0:O:0	A:0:C:0:G:0:T:2:N:0:O:0	0,21,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19316	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	2	28	20	0.0196078431372549	0.0	A:0:C:1:G:0:T:49:N:0:O:1	A:0:C:0:G:0:T:2:N:0:O:0	0,21,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19318	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	3	28	20	0.024390243902439025	0.0	A:0:C:40:G:0:T:1:N:0:O:0	A:0:C:3:G:0:T:0:N:0:O:0	0,15,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	4	28	20	0.02702702702702703	0.0	A:0:C:35:G:0:T:1:N:0:O:1	A:0:C:4:G:0:T:0:N:0:O:0	0,20,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19417	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	5	28	20	0.021739130434782608	0.0	A:1:C:0:G:45:T:0:N:0:O:0	A:0:C:0:G:5:T:0:N:0:O:0	0,17,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	5	28	20	0.02040816326530612	0.0	A:48:C:0:G:1:T:0:N:0:O:0	A:5:C:0:G:0:T:0:N:0:O:0	1,17,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19453	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	5	28	20	0.022727272727272728	0.0	A:42:C:0:G:1:T:0:N:0:O:1	A:5:C:0:G:0:T:0:N:0:O:0	1,19,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	5	28	20	0.021739130434782608	0.0	A:0:C:45:G:0:T:1:N:0:O:0	A:0:C:5:G:0:T:0:N:0:O:0	0,20,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	5	28	20	0.022727272727272728	0.0	A:0:C:1:G:0:T:43:N:0:O:0	A:0:C:0:G:0:T:5:N:0:O:0	0,24,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	5	28	20	0.04081632653061224	0.0	A:0:C:46:G:0:T:2:N:0:O:1	A:0:C:5:G:0:T:0:N:0:O:0	0,21,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19479	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	5	28	20	0.025	0.0	A:1:C:0:G:0:T:39:N:0:O:0	A:0:C:0:G:0:T:5:N:0:O:0	0,12,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19480	G	T	G	16	ignore low frequency variant	Pass	False	False	True	39	5	28	20	0.02564102564102564	0.0	A:0:C:0:G:37:T:1:N:0:O:1	A:0:C:0:G:5:T:0:N:0:O:0	0,9,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19484	C	T	C	1	near depth threshold	Alarm	False	False	True	20	5	28	20	0.05	0.0	A:0:C:19:G:0:T:1:N:0:O:0	A:0:C:5:G:0:T:0:N:0:O:0	0,15,1,5	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	19549	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	5	28	20	0.022727272727272728	0.0	A:1:C:0:G:43:T:0:N:0:O:0	A:0:C:0:G:5:T:0:N:0:O:0	0,19,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19554	C	T	C	1	near depth threshold	Alarm	False	False	True	33	5	28	20	0.030303030303030304	0.0	A:0:C:32:G:0:T:1:N:0:O:0	A:0:C:5:G:0:T:0:N:0:O:0	0,13,1,20	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19561	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	5	28	20	0.02702702702702703	0.0	A:1:C:0:G:0:T:36:N:0:O:0	A:0:C:0:G:0:T:5:N:0:O:0	1,11,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19562	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	5	28	20	0.027777777777777776	0.0	A:0:C:1:G:0:T:35:N:0:O:0	A:0:C:0:G:0:T:5:N:0:O:0	1,9,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19565	G	T	G	16	ignore low frequency variant	Pass	False	False	True	42	5	28	20	0.023809523809523808	0.0	A:1:C:0:G:40:T:1:N:0:O:0	A:0:C:0:G:5:T:0:N:0:O:0	1,16,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	158	139	28	20	0.0189873417721519	0.0	A:3:C:0:G:0:T:124:N:0:O:31	A:0:C:0:G:0:T:139:N:0:O:0	0,71,3,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	139	28	20	0.030612244897959183	0.0	A:95:C:0:G:0:T:3:N:0:O:0	A:139:C:0:G:0:T:0:N:0:O:0	0,64,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	133	28	20	0.030927835051546393	0.0	A:0:C:3:G:0:T:93:N:0:O:1	A:0:C:0:G:0:T:133:N:0:O:0	0,62,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20207	A	C	A	16	ignore low frequency variant	Pass	False	False	True	226	197	28	20	0.02654867256637168	0.0	A:201:C:6:G:0:T:1:N:0:O:18	A:197:C:0:G:0:T:0:N:0:O:0	6,124,0,102	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	208	197	28	20	0.019230769230769232	0.0	A:4:C:0:G:176:T:0:N:0:O:28	A:0:C:0:G:195:T:2:N:0:O:0	4,79,0,129	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	17	28	20	0.02857142857142857	0.0	A:0:C:0:G:3:T:101:N:0:O:1	A:0:C:0:G:0:T:17:N:0:O:0	3,59,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20413	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	25	28	20	0.01818181818181818	0.0	A:0:C:0:G:2:T:98:N:0:O:10	A:0:C:0:G:0:T:25:N:0:O:0	2,53,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20755	A	C	C	17	accept high frequency variant	Pass	False	True	True	161	274	28	20	0.9751552795031055	0.9963503649635036	A:3:C:157:G:0:T:0:N:0:O:1	A:1:C:273:G:0:T:0:N:0:O:0	108,112,49,49	420.0	2345.0	yes	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	267	28	20	0.031007751937984496	0.0	A:124:C:0:G:4:T:0:N:0:O:1	A:267:C:0:G:0:T:0:N:0:O:0	4,74,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	178	28	20	0.02564102564102564	0.0	A:2:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:178:T:0:N:0:O:0	2,38,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	178	28	20	0.0196078431372549	0.0	A:0:C:89:G:0:T:2:N:0:O:11	A:0:C:178:G:0:T:0:N:0:O:0	2,60,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	205	347	28	20	0.02926829268292683	0.002881844380403458	A:198:C:0:G:6:T:0:N:0:O:1	A:346:C:0:G:1:T:0:N:0:O:0	6,80,0,125	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20904	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	191	28	20	0.028846153846153848	0.0	A:100:C:3:G:0:T:0:N:0:O:1	A:191:C:0:G:0:T:0:N:0:O:0	3,33,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	191	28	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	2,40,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	191	28	20	0.028037383177570093	0.0	A:0:C:104:G:0:T:3:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,57,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21148	G	T	G	1	near depth threshold	Alarm	False	False	True	22	3	28	20	0.13636363636363635	0.0	A:0:C:0:G:17:T:3:N:0:O:2	A:0:C:0:G:3:T:0:N:0:O:0	1,16,2,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21225	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	6	28	20	0.02857142857142857	0.0	A:1:C:0:G:34:T:0:N:0:O:0	A:0:C:0:G:6:T:0:N:0:O:0	1,13,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21269	C	T	C	1	near depth threshold	Alarm	False	False	True	33	6	28	20	0.09090909090909091	0.0	A:0:C:30:G:0:T:3:N:0:O:0	A:0:C:6:G:0:T:0:N:0:O:0	0,20,3,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21325	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	6	28	20	0.05714285714285714	0.0	A:2:C:0:G:33:T:0:N:0:O:0	A:0:C:0:G:6:T:0:N:0:O:0	2,19,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21327	C	A	C	16	ignore low frequency variant	Pass	False	False	True	39	6	28	20	0.02564102564102564	0.0	A:1:C:38:G:0:T:0:N:0:O:0	A:0:C:6:G:0:T:0:N:0:O:0	1,20,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21328	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	6	28	20	0.024390243902439025	0.0	A:39:C:0:G:0:T:1:N:0:O:1	A:6:C:0:G:0:T:0:N:0:O:0	1,21,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21375	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	5	28	20	0.025	0.0	A:1:C:0:G:39:T:0:N:0:O:0	A:0:C:0:G:5:T:0:N:0:O:0	0,18,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21377	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	5	28	20	0.02702702702702703	0.0	A:0:C:36:G:0:T:1:N:0:O:0	A:0:C:5:G:0:T:0:N:0:O:0	0,19,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21381	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	5	28	20	0.02631578947368421	0.0	A:0:C:34:G:0:T:1:N:0:O:3	A:0:C:5:G:0:T:0:N:0:O:0	1,20,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21421	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	25	28	20	0.017094017094017096	0.0	A:90:C:0:G:0:T:2:N:0:O:25	A:25:C:0:G:0:T:0:N:0:O:0	0,50,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	25	28	20	0.02631578947368421	0.0	A:2:C:0:G:72:T:0:N:0:O:2	A:0:C:0:G:24:T:1:N:0:O:0	1,21,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21424	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	25	28	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:25:T:0:N:0:O:0	1,30,1,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	27	28	20	0.06329113924050633	0.0	A:5:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:27:T:0:N:0:O:0	5,11,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	31	28	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:31:G:0:T:0:N:0:O:0	1,55,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	172	180	28	20	0.040697674418604654	0.0	A:0:C:152:G:0:T:7:N:0:O:13	A:0:C:180:G:0:T:0:N:0:O:0	5,52,2,120	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	191	180	28	20	0.020942408376963352	0.0	A:0:C:178:G:0:T:4:N:0:O:9	A:2:C:178:G:0:T:0:N:0:O:0	0,157,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	204	180	28	20	0.024509803921568627	0.0	A:197:C:0:G:5:T:0:N:0:O:2	A:180:C:0:G:0:T:0:N:0:O:0	5,76,0,128	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	242	180	28	20	0.04132231404958678	0.0	A:10:C:0:G:219:T:0:N:0:O:13	A:0:C:0:G:180:T:0:N:0:O:0	10,109,0,133	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	183	28	20	0.03361344537815126	0.0	A:0:C:0:G:4:T:115:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	4,34,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	22352	G	T	G	16	ignore low frequency variant	Pass	False	False	True	76	26	28	20	0.02631578947368421	0.0	A:0:C:0:G:74:T:2:N:0:O:0	A:0:C:0:G:26:T:0:N:0:O:0	2,41,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	184	28	20	0.027210884353741496	0.0	A:4:C:0:G:143:T:0:N:0:O:0	A:0:C:0:G:183:T:1:N:0:O:0	4,40,0,107	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	135	154	28	20	0.9185185185185185	0.9935064935064936	A:0:C:0:G:124:T:0:N:0:O:11	A:0:C:0:G:153:T:1:N:0:O:0	46,57,78,78	203.703	1650.3	yes	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	23531	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	182	28	20	0.021505376344086023	0.0	A:91:C:2:G:0:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	2,35,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	182	28	20	0.02531645569620253	0.0	A:77:C:0:G:2:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	2,22,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	182	28	20	0.07317073170731707	0.0	A:6:C:0:G:71:T:0:N:0:O:5	A:0:C:0:G:180:T:2:N:0:O:0	6,18,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23772	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	182	28	20	0.030612244897959183	0.0	A:94:C:0:G:3:T:0:N:0:O:1	A:182:C:0:G:0:T:0:N:0:O:0	3,40,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	167	28	20	0.13636363636363635	0.0	A:0:C:75:G:0:T:12:N:0:O:1	A:0:C:167:G:0:T:0:N:0:O:0	0,60,12,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	167	28	20	0.02247191011235955	0.005988023952095809	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:1:G:0:T:166:N:0:O:0	0,58,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	167	28	20	0.020202020202020204	0.0	A:1:C:93:G:0:T:2:N:0:O:3	A:0:C:167:G:0:T:0:N:0:O:0	2,40,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	167	28	20	0.03759398496240601	0.0	A:128:C:0:G:0:T:5:N:0:O:0	A:167:C:0:G:0:T:0:N:0:O:0	4,58,1,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	167	28	20	0.06097560975609756	0.0	A:5:C:0:G:0:T:77:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	4,17,1,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	167	28	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:167:T:0:N:0:O:0	2,18,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	167	28	20	0.0449438202247191	0.0	A:0:C:85:G:0:T:4:N:0:O:0	A:0:C:167:G:0:T:0:N:0:O:0	0,59,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	136	28	20	0.05555555555555555	0.0	A:5:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:136:T:0:N:0:O:0	5,17,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	137	28	20	0.021739130434782608	0.0	A:2:C:0:G:85:T:1:N:0:O:4	A:0:C:0:G:136:T:0:N:0:O:1	2,18,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	135	28	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:135:N:0:O:0	2,24,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24397	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	136	28	20	0.01904761904761905	0.0	A:0:C:2:G:0:T:91:N:0:O:12	A:0:C:0:G:0:T:136:N:0:O:0	2,51,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	175	28	20	0.02631578947368421	0.011428571428571429	A:3:C:108:G:0:T:1:N:0:O:2	A:2:C:173:G:0:T:0:N:0:O:0	3,60,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	175	28	20	0.02040816326530612	0.0	A:133:C:0:G:0:T:3:N:0:O:11	A:175:C:0:G:0:T:0:N:0:O:0	3,104,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	175	28	20	0.022058823529411766	0.0	A:0:C:131:G:0:T:3:N:0:O:2	A:0:C:175:G:0:T:0:N:0:O:0	0,93,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	175	28	20	0.058823529411764705	0.0	A:0:C:93:G:0:T:6:N:0:O:3	A:1:C:174:G:0:T:0:N:0:O:0	0,84,6,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	175	28	20	0.021052631578947368	0.0	A:0:C:89:G:0:T:2:N:0:O:4	A:0:C:175:G:0:T:0:N:0:O:0	2,75,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	183	28	20	0.020618556701030927	0.0	A:2:C:0:G:91:T:0:N:0:O:4	A:0:C:0:G:183:T:0:N:0:O:0	0,66,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	183	28	20	0.022222222222222223	0.0	A:0:C:0:G:2:T:88:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,61,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	43	183	28	20	0.023255813953488372	0.00546448087431694	A:0:C:1:G:0:T:41:N:0:O:1	A:0:C:1:G:0:T:182:N:0:O:0	1,29,0,14	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	25105	A	G	A	1	near depth threshold	Alarm	False	False	True	30	209	28	20	0.03333333333333333	0.0	A:29:C:0:G:1:T:0:N:0:O:0	A:209:C:0:G:0:T:0:N:0:O:0	0,2,1,28	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	210	28	20	0.021505376344086023	0.0	A:0:C:0:G:2:T:91:N:0:O:0	A:0:C:0:G:0:T:210:N:0:O:0	2,60,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	157	28	20	0.021739130434782608	0.0	A:0:C:85:G:0:T:2:N:0:O:5	A:1:C:156:G:0:T:0:N:0:O:0	0,80,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	156	28	20	0.02912621359223301	0.0	A:0:C:0:G:3:T:99:N:0:O:1	A:0:C:0:G:0:T:156:N:0:O:0	3,42,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	124	157	28	20	0.9919354838709677	1.0	A:0:C:0:G:1:T:123:N:0:O:0	A:0:C:0:G:0:T:157:N:0:O:0	57,57,66,67	350.0	2187.0	yes	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	25592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	157	28	20	0.020833333333333332	0.0	A:46:C:0:G:1:T:0:N:0:O:1	A:157:C:0:G:0:T:0:N:0:O:0	0,2,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	51	189	28	20	0.0196078431372549	0.0	A:1:C:1:G:47:T:0:N:0:O:2	A:0:C:0:G:189:T:0:N:0:O:0	1,15,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25796	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	189	28	20	0.03571428571428571	0.0	A:0:C:64:G:0:T:3:N:0:O:17	A:4:C:185:G:0:T:0:N:0:O:0	3,47,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	190	28	20	0.019230769230769232	0.0	A:2:C:66:G:0:T:0:N:0:O:36	A:0:C:189:G:0:T:0:N:0:O:1	2,48,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	61	189	28	20	0.03278688524590164	0.0	A:56:C:2:G:0:T:0:N:0:O:3	A:189:C:0:G:0:T:0:N:0:O:0	0,48,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25831	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	189	28	20	0.019230769230769232	0.005291005291005291	A:0:C:96:G:0:T:2:N:0:O:6	A:2:C:186:G:0:T:1:N:0:O:0	1,91,1,13	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	77	189	28	20	0.025974025974025976	0.0	A:72:C:0:G:0:T:2:N:0:O:3	A:189:C:0:G:0:T:0:N:0:O:0	0,61,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	189	28	20	0.08602150537634409	0.0	A:81:C:0:G:8:T:0:N:0:O:4	A:189:C:0:G:0:T:0:N:0:O:0	8,48,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	189	28	20	0.04	0.0	A:47:C:0:G:2:T:0:N:0:O:1	A:189:C:0:G:0:T:0:N:0:O:0	2,25,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	189	28	20	0.022988505747126436	0.0	A:85:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,50,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	189	28	20	0.06578947368421052	0.0	A:5:C:0:G:70:T:0:N:0:O:1	A:0:C:0:G:189:T:0:N:0:O:0	5,37,0,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	173	318	28	20	0.023121387283236993	0.0	A:169:C:0:G:4:T:0:N:0:O:0	A:318:C:0:G:0:T:0:N:0:O:0	1,140,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26144	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	273	28	20	0.024	0.0	A:0:C:0:G:122:T:3:N:0:O:0	A:0:C:0:G:273:T:0:N:0:O:0	3,68,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	185	28	20	0.0297029702970297	0.0	A:0:C:98:G:0:T:3:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,71,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26456	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	185	28	20	0.02666666666666667	0.0	A:0:C:72:G:0:T:2:N:0:O:1	A:0:C:185:G:0:T:0:N:0:O:0	0,31,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	26457	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	185	28	20	0.01904761904761905	0.0	A:0:C:1:G:2:T:97:N:0:O:5	A:0:C:1:G:0:T:184:N:0:O:0	0,58,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	185	28	20	0.022727272727272728	0.0	A:0:C:86:G:0:T:2:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,65,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26534	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	185	28	20	0.023255813953488372	0.0	A:0:C:84:G:0:T:2:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,48,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	185	28	20	0.05063291139240506	0.0	A:4:C:0:G:75:T:0:N:0:O:0	A:0:C:0:G:185:T:0:N:0:O:0	4,29,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	158	28	20	0.0660377358490566	0.0	A:96:C:0:G:0:T:7:N:0:O:3	A:158:C:0:G:0:T:0:N:0:O:0	7,27,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	158	28	20	0.043010752688172046	0.0	A:4:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:158:T:0:N:0:O:0	4,12,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26731	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	158	28	20	0.022556390977443608	0.0	A:0:C:3:G:0:T:130:N:0:O:0	A:0:C:0:G:0:T:158:N:0:O:0	0,80,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	158	28	20	0.024193548387096774	0.006329113924050633	A:117:C:0:G:3:T:1:N:0:O:3	A:157:C:0:G:1:T:0:N:0:O:0	3,57,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26891	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	180	28	20	0.019801980198019802	0.0	A:98:C:2:G:0:T:0:N:0:O:1	A:180:C:0:G:0:T:0:N:0:O:0	2,35,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	180	28	20	0.02040816326530612	0.0	A:2:C:1:G:95:T:0:N:0:O:0	A:0:C:0:G:180:T:0:N:0:O:0	2,34,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	180	28	20	0.021052631578947368	0.0	A:80:C:0:G:2:T:0:N:0:O:13	A:180:C:0:G:0:T:0:N:0:O:0	2,31,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	180	28	20	0.023529411764705882	0.0	A:81:C:0:G:2:T:0:N:0:O:2	A:180:C:0:G:0:T:0:N:0:O:0	2,23,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	180	28	20	0.0379746835443038	0.0	A:3:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:180:T:0:N:0:O:0	3,18,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	180	28	20	0.04054054054054054	0.0	A:0:C:70:G:0:T:3:N:0:O:1	A:0:C:180:G:0:T:0:N:0:O:0	0,58,3,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	27673	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	29	28	20	0.024193548387096774	0.0	A:0:C:118:G:0:T:3:N:0:O:3	A:0:C:29:G:0:T:0:N:0:O:0	0,47,3,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	27684	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	29	28	20	0.031746031746031744	0.0	A:0:C:60:G:0:T:2:N:0:O:1	A:0:C:29:G:0:T:0:N:0:O:0	0,35,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	27685	T	A	T	16	ignore low frequency variant	Pass	False	False	True	65	29	28	20	0.03076923076923077	0.0	A:2:C:0:G:0:T:57:N:0:O:6	A:0:C:0:G:0:T:29:N:0:O:0	0,44,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	176	28	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:92:N:0:O:7	A:0:C:0:G:0:T:176:N:0:O:0	0,63,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	160	28	20	0.03409090909090909	0.0	A:3:C:0:G:82:T:3:N:0:O:0	A:0:C:0:G:160:T:0:N:0:O:0	0,29,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	160	28	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:160:G:0:T:0:N:0:O:0	0,57,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	160	28	20	0.025	0.0	A:0:C:112:G:0:T:3:N:0:O:5	A:0:C:160:G:0:T:0:N:0:O:0	1,71,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	160	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:160:N:0:O:0	0,62,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28699	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	159	28	20	0.020833333333333332	0.0	A:94:C:2:G:0:T:0:N:0:O:0	A:159:C:0:G:0:T:0:N:0:O:0	1,47,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	168	28	20	0.03409090909090909	0.0	A:3:C:0:G:84:T:0:N:0:O:1	A:0:C:0:G:168:T:0:N:0:O:0	0,21,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	168	28	20	0.028985507246376812	0.0	A:0:C:67:G:0:T:2:N:0:O:0	A:0:C:168:G:0:T:0:N:0:O:0	0,19,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	168	28	20	0.03614457831325301	0.0	A:0:C:72:G:1:T:3:N:0:O:7	A:0:C:168:G:0:T:0:N:0:O:0	0,31,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	170	28	20	0.02247191011235955	0.0	A:2:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	0,11,2,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	170	28	20	0.05454545454545454	0.0	A:6:C:0:G:103:T:0:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	6,15,0,95	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	170	28	20	0.023255813953488372	0.0	A:0:C:84:G:0:T:2:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,24,2,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	299	28	20	0.02040816326530612	0.0	A:0:C:144:G:0:T:3:N:0:O:0	A:3:C:296:G:0:T:0:N:0:O:0	0,116,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	149	171	28	20	0.020134228187919462	0.0	A:3:C:139:G:0:T:2:N:0:O:5	A:0:C:171:G:0:T:0:N:0:O:0	3,71,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	111	171	28	20	0.036036036036036036	0.0	A:0:C:4:G:104:T:0:N:0:O:3	A:0:C:0:G:171:T:0:N:0:O:0	1,51,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29364	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	30	28	20	0.021505376344086023	0.0	A:2:C:90:G:0:T:0:N:0:O:1	A:0:C:30:G:0:T:0:N:0:O:0	1,45,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	30	28	20	0.02631578947368421	0.0	A:34:C:0:G:1:T:0:N:0:O:3	A:30:C:0:G:0:T:0:N:0:O:0	0,1,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	30	28	20	0.05405405405405406	0.0	A:34:C:0:G:2:T:0:N:0:O:1	A:30:C:0:G:0:T:0:N:0:O:0	2,5,0,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	30	28	20	0.023809523809523808	0.0	A:2:C:0:G:80:T:0:N:0:O:2	A:0:C:0:G:30:T:0:N:0:O:0	2,20,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	30	28	20	0.020618556701030927	0.0	A:2:C:0:G:81:T:0:N:0:O:14	A:0:C:0:G:30:T:0:N:0:O:0	2,26,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	46	27	28	20	0.021739130434782608	0.0	A:0:C:44:G:1:T:0:N:0:O:1	A:0:C:27:G:0:T:0:N:0:O:0	1,15,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00037	artic-pipeline	NB03	MN908947.3	13931	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	156	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00037	artic-pipeline	NB03	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	144	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	74	144	28	20	0.02702702702702703	0.0	A:71:C:0:G:0:T:2:N:0:O:1	A:144:C:0:G:0:T:0:N:0:O:0	0,17,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	128	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	146	28	20	0.025974025974025976	0.0	A:0:C:2:G:0:T:75:N:0:O:0	A:0:C:0:G:0:T:146:N:0:O:0	0,15,2,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	147	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	147	28	20	0.024390243902439025	0.0	A:1:C:79:G:0:T:2:N:0:O:0	A:0:C:147:G:0:T:0:N:0:O:0	0,15,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	163	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	150	28	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:150:C:0:G:0:T:0:N:0:O:0	2,16,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	164	C	A	C	16	ignore low frequency variant	Pass	False	False	True	76	151	28	20	0.02631578947368421	0.0	A:2:C:72:G:0:T:0:N:0:O:2	A:0:C:151:G:0:T:0:N:0:O:0	2,15,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	203	C	G	C	16	ignore low frequency variant	Pass	False	False	True	49	153	28	20	0.02040816326530612	0.0	A:0:C:48:G:1:T:0:N:0:O:0	A:3:C:150:G:0:T:0:N:0:O:0	0,17,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	72	144	28	20	0.9722222222222222	1.0	A:0:C:1:G:1:T:70:N:0:O:0	A:0:C:0:G:0:T:144:N:0:O:0	16,17,54,55	70.0	1935.5	yes	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	337	C	T	T	17	accept high frequency variant	Pass	False	True	True	57	144	28	20	0.9824561403508771	1.0	A:0:C:1:G:0:T:56:N:0:O:0	A:0:C:0:G:0:T:144:N:0:O:0	9,10,47,47	559.237	1296.0	yes	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	379	C	A	A	17	accept high frequency variant	Pass	False	True	True	155	314	28	20	0.9870967741935484	1.0	A:153:C:1:G:1:T:0:N:0:O:0	A:314:C:0:G:0:T:0:N:0:O:0	50,51,103,104	485.463	2955.1	yes	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	156	28	20	0.02	0.0	A:2:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:155:T:1:N:0:O:0	0,36,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	156	28	20	0.021052631578947368	0.0	A:91:C:0:G:0:T:2:N:0:O:2	A:156:C:0:G:0:T:0:N:0:O:0	2,11,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	153	178	28	20	0.9869281045751634	1.0	A:0:C:1:G:0:T:151:N:0:O:1	A:0:C:0:G:0:T:178:N:0:O:0	114,116,37,37	350.0	1822.5	yes	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	178	28	20	0.034482758620689655	0.0	A:1:C:54:G:0:T:2:N:0:O:1	A:0:C:178:G:0:T:0:N:0:O:0	1,47,1,11	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	1120	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	178	28	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	3,78,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1122	C	A	C	16	ignore low frequency variant	Pass	False	False	True	148	178	28	20	0.02702702702702703	0.011235955056179775	A:4:C:132:G:0:T:0:N:0:O:12	A:2:C:176:G:0:T:0:N:0:O:0	4,113,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	179	28	20	0.03278688524590164	0.0	A:2:C:0:G:44:T:0:N:0:O:15	A:0:C:0:G:177:T:1:N:0:O:1	1,12,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	178	28	20	0.023255813953488372	0.0	A:1:C:0:G:38:T:0:N:0:O:4	A:0:C:0:G:178:T:0:N:0:O:0	1,15,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	178	28	20	0.07017543859649122	0.0	A:4:C:0:G:53:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	4,30,0,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	362	28	20	0.050505050505050504	0.0	A:0:C:92:G:0:T:5:N:0:O:2	A:2:C:360:G:0:T:0:N:0:O:0	0,49,5,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	362	28	20	0.02702702702702703	0.0	A:0:C:0:G:106:T:3:N:0:O:2	A:0:C:0:G:362:T:0:N:0:O:0	0,39,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	285	28	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:283:T:2:N:0:O:0	0,36,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1707	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	180	28	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:180:G:0:T:0:N:0:O:0	1,53,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	180	28	20	0.03333333333333333	0.0	A:2:C:0:G:56:T:0:N:0:O:2	A:0:C:0:G:179:T:1:N:0:O:0	2,49,0,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	180	28	20	0.028037383177570093	0.0	A:0:C:3:G:0:T:101:N:0:O:3	A:0:C:0:G:0:T:180:N:0:O:0	0,38,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	179	28	20	0.03571428571428571	0.0	A:80:C:0:G:3:T:0:N:0:O:1	A:179:C:0:G:0:T:0:N:0:O:0	1,10,2,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	179	28	20	0.02127659574468085	0.0	A:46:C:0:G:1:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	0,0,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	153	28	20	0.0898876404494382	0.0	A:8:C:0:G:80:T:0:N:0:O:1	A:0:C:0:G:153:T:0:N:0:O:0	8,18,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	2294	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	300	28	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:300:C:0:G:0:T:0:N:0:O:0	2,41,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	196	28	20	0.03076923076923077	0.0	A:2:C:0:G:63:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	0,16,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	137	171	28	20	0.021897810218978103	0.0	A:134:C:3:G:0:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	3,87,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	171	28	20	0.03571428571428571	0.0	A:4:C:0:G:108:T:0:N:0:O:0	A:0:C:0:G:170:T:1:N:0:O:0	4,53,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	171	28	20	0.019867549668874173	0.0	A:141:C:0:G:3:T:0:N:0:O:7	A:171:C:0:G:0:T:0:N:0:O:0	3,93,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	2874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	234	336	28	20	0.02564102564102564	0.0	A:228:C:0:G:6:T:0:N:0:O:0	A:336:C:0:G:0:T:0:N:0:O:0	6,102,0,132	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	126	177	28	20	0.6746031746031746	1.0	A:0:C:0:G:0:T:85:N:0:O:41	A:0:C:0:G:0:T:177:N:0:O:0	46,87,39,39	399.389	1438.0	yes	.	.	.	mixed position	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	3131	C	A	C	16	ignore low frequency variant	Pass	False	False	True	119	177	28	20	0.025210084033613446	0.005649717514124294	A:3:C:110:G:0:T:0:N:0:O:6	A:1:C:176:G:0:T:0:N:0:O:0	3,65,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	177	28	20	0.021739130434782608	0.0	A:0:C:0:G:79:T:2:N:0:O:11	A:0:C:0:G:177:T:0:N:0:O:0	0,66,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	151	28	20	0.02247191011235955	0.0	A:1:C:85:G:0:T:2:N:0:O:1	A:0:C:151:G:0:T:0:N:0:O:0	0,42,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	3378	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	151	28	20	0.023622047244094488	0.0	A:0:C:3:G:0:T:124:N:0:O:0	A:0:C:0:G:0:T:151:N:0:O:0	0,54,3,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	151	28	20	0.038834951456310676	0.0	A:4:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:150:T:1:N:0:O:0	4,33,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	178	28	20	0.07216494845360824	0.0	A:0:C:90:G:0:T:7:N:0:O:0	A:0:C:178:G:0:T:0:N:0:O:0	0,70,7,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	178	28	20	0.028846153846153848	0.0	A:100:C:0:G:3:T:0:N:0:O:1	A:178:C:0:G:0:T:0:N:0:O:0	3,49,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	140	28	20	0.034482758620689655	0.0	A:3:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:140:T:0:N:0:O:0	0,48,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	140	28	20	0.029411764705882353	0.0	A:0:C:66:G:0:T:2:N:0:O:0	A:0:C:140:G:0:T:0:N:0:O:0	0,60,2,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	4003	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	140	28	20	0.025	0.0	A:0:C:3:G:0:T:111:N:0:O:6	A:0:C:0:G:0:T:140:N:0:O:0	0,58,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	198	320	28	20	0.03535353535353535	0.003125	A:0:C:0:G:181:T:7:N:0:O:10	A:0:C:0:G:319:T:1:N:0:O:0	0,159,7,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	4427	T	A	T	16	ignore low frequency variant	Pass	False	False	True	151	165	28	20	0.019867549668874173	0.0	A:3:C:0:G:0:T:147:N:0:O:1	A:0:C:0:G:0:T:165:N:0:O:0	2,78,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	168	171	28	20	0.023809523809523808	0.0	A:0:C:162:G:0:T:4:N:0:O:2	A:1:C:170:G:0:T:0:N:0:O:0	0,115,4,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5241	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	35	28	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:35:G:0:T:0:N:0:O:0	2,60,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5258	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	35	28	20	0.02197802197802198	0.0	A:88:C:0:G:2:T:0:N:0:O:1	A:35:C:0:G:0:T:0:N:0:O:0	2,47,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	34	28	20	0.056818181818181816	0.0	A:82:C:0:G:5:T:0:N:0:O:1	A:34:C:0:G:0:T:0:N:0:O:0	5,54,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5284	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	34	28	20	0.02912621359223301	0.0	A:0:C:99:G:0:T:3:N:0:O:1	A:0:C:34:G:0:T:0:N:0:O:0	3,69,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	34	28	20	0.03125	0.0	A:0:C:3:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:34:N:0:O:0	0,74,3,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	245	28	20	0.020618556701030927	0.0	A:95:C:0:G:2:T:0:N:0:O:0	A:245:C:0:G:0:T:0:N:0:O:0	2,43,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	247	28	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:247:C:0:G:0:T:0:N:0:O:0	2,41,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	245	28	20	0.017857142857142856	0.0	A:2:C:0:G:98:T:0:N:0:O:12	A:0:C:0:G:244:T:1:N:0:O:0	2,54,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5532	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	230	28	20	0.02	0.0	A:2:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:229:T:1:N:0:O:0	1,65,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5551	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	194	28	20	0.02127659574468085	0.0	A:2:C:0:G:0:T:86:N:0:O:6	A:0:C:0:G:0:T:194:N:0:O:0	0,72,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	141	28	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:141:T:0:N:0:O:0	2,51,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	5626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	177	28	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	2,33,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	177	28	20	0.10810810810810811	0.0	A:0:C:64:G:0:T:8:N:0:O:2	A:0:C:177:G:0:T:0:N:0:O:0	0,60,8,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	177	28	20	0.02	0.0	A:2:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:177:T:0:N:0:O:0	2,33,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	177	28	20	0.016666666666666666	0.0	A:2:C:0:G:93:T:0:N:0:O:25	A:0:C:0:G:176:T:1:N:0:O:0	1,29,1,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	180	28	20	0.07526881720430108	0.0	A:0:C:86:G:0:T:7:N:0:O:0	A:0:C:180:G:0:T:0:N:0:O:0	0,71,7,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	172	28	20	0.03333333333333333	0.0	A:1:C:0:G:85:T:3:N:0:O:1	A:0:C:0:G:172:T:0:N:0:O:0	0,17,3,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	173	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,67,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	173	28	20	0.025423728813559324	0.0	A:0:C:112:G:0:T:3:N:0:O:3	A:2:C:171:G:0:T:0:N:0:O:0	0,80,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	96	28	20	0.02830188679245283	0.0	A:0:C:103:G:0:T:3:N:0:O:0	A:0:C:96:G:0:T:0:N:0:O:0	0,59,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6668	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	96	28	20	0.02	0.0	A:0:C:2:G:1:T:92:N:0:O:5	A:0:C:0:G:0:T:96:N:0:O:0	2,53,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	96	28	20	0.02857142857142857	0.0	A:0:C:3:G:0:T:99:N:0:O:3	A:0:C:0:G:0:T:96:N:0:O:0	0,57,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	89	28	20	0.049019607843137254	0.0	A:5:C:0:G:95:T:0:N:0:O:2	A:0:C:0:G:89:T:0:N:0:O:0	5,35,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	213	100	28	20	0.046948356807511735	0.0	A:188:C:0:G:10:T:4:N:0:O:11	A:100:C:0:G:0:T:0:N:0:O:0	9,80,1,133	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	101	28	20	0.041237113402061855	0.0	A:0:C:178:G:0:T:8:N:0:O:8	A:1:C:99:G:0:T:0:N:0:O:1	0,119,8,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	6900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	135	28	20	0.020833333333333332	0.0	A:93:C:0:G:2:T:0:N:0:O:1	A:135:C:0:G:0:T:0:N:0:O:0	2,32,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	94	28	20	0.09183673469387756	0.0	A:89:C:0:G:0:T:9:N:0:O:0	A:94:C:0:G:0:T:0:N:0:O:0	0,62,9,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	7224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	176	28	20	0.017699115044247787	0.0	A:0:C:87:G:0:T:2:N:0:O:24	A:0:C:176:G:0:T:0:N:0:O:0	0,57,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	192	28	20	0.0380952380952381	0.0	A:0:C:4:G:0:T:95:N:0:O:6	A:0:C:0:G:0:T:192:N:0:O:0	0,51,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	193	28	20	0.02631578947368421	0.0	A:0:C:111:G:0:T:3:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,52,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	197	28	20	0.04201680672268908	0.0	A:0:C:5:G:0:T:114:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	0,78,5,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	51	28	20	0.04819277108433735	0.0	A:0:C:4:G:0:T:79:N:0:O:0	A:0:C:0:G:0:T:51:N:0:O:0	0,55,4,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	34	28	20	0.053763440860215055	0.0	A:1:C:5:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:34:N:0:O:0	0,54,5,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	8628	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	212	28	20	0.025510204081632654	0.0	A:186:C:0:G:5:T:3:N:0:O:2	A:212:C:0:G:0:T:0:N:0:O:0	5,85,0,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	186	28	20	0.037383177570093455	0.0	A:0:C:4:G:0:T:103:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	4,67,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	213	28	20	0.031746031746031744	0.0	A:2:C:0:G:61:T:0:N:0:O:0	A:0:C:0:G:213:T:0:N:0:O:0	2,9,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	154	28	20	0.02702702702702703	0.0	A:3:C:0:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	2,44,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	154	28	20	0.023255813953488372	0.0	A:3:C:0:G:125:T:0:N:0:O:1	A:0:C:0:G:154:T:0:N:0:O:0	3,46,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9388	G	T	N	2	allele in negative control	Alarm	False	False	False	127	173	28	20	0.031496062992125984	0.0	A:0:C:0:G:123:T:4:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	0,47,4,80	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9502	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	173	28	20	0.02127659574468085	0.0	A:0:C:89:G:0:T:2:N:0:O:3	A:1:C:172:G:0:T:0:N:0:O:0	2,51,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	329	28	20	0.02531645569620253	0.0	A:0:C:152:G:0:T:4:N:0:O:2	A:0:C:329:G:0:T:0:N:0:O:0	0,121,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9561	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	201	28	20	0.025	0.0	A:0:C:116:G:0:T:3:N:0:O:1	A:0:C:201:G:0:T:0:N:0:O:0	0,87,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	245	28	20	0.021739130434782608	0.0	A:0:C:77:G:1:T:2:N:0:O:12	A:0:C:245:G:0:T:0:N:0:O:0	0,69,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9729	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	243	28	20	0.02631578947368421	0.0	A:3:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:243:T:0:N:0:O:0	3,65,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	9864	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	177	28	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:1:C:176:G:0:T:0:N:0:O:0	0,51,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	126	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:87:N:0:O:9	A:0:C:0:G:0:T:126:N:0:O:0	0,42,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	203	257	28	20	0.024630541871921183	0.0	A:5:C:0:G:197:T:0:N:0:O:1	A:0:C:0:G:257:T:0:N:0:O:0	5,71,0,132	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	176	28	20	0.02830188679245283	0.0	A:103:C:0:G:3:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	3,34,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	176	28	20	0.021739130434782608	0.0	A:89:C:0:G:2:T:0:N:0:O:1	A:176:C:0:G:0:T:0:N:0:O:0	2,26,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	182	28	20	0.024096385542168676	0.0	A:0:C:2:G:0:T:76:N:0:O:5	A:0:C:0:G:0:T:182:N:0:O:0	0,55,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10807	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	182	28	20	0.021505376344086023	0.0	A:91:C:2:G:0:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	1,61,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	182	28	20	0.052083333333333336	0.0	A:0:C:91:G:0:T:5:N:0:O:0	A:0:C:182:G:0:T:0:N:0:O:0	0,55,5,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	182	28	20	0.02586206896551724	0.005494505494505495	A:3:C:98:G:0:T:0:N:0:O:15	A:1:C:181:G:0:T:0:N:0:O:0	3,47,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	11012	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	180	28	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:101:N:0:O:0	A:0:C:0:G:0:T:180:N:0:O:0	0,52,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	11123	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	193	28	20	0.028846153846153848	0.0	A:3:C:0:G:100:T:1:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	1,57,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	11242	G	C	G	16	ignore low frequency variant	Pass	False	False	True	116	193	28	20	0.02586206896551724	0.0	A:0:C:3:G:113:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	0,67,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	11293	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	193	28	20	0.020202020202020204	0.0	A:0:C:0:G:2:T:97:N:0:O:0	A:1:C:0:G:0:T:192:N:0:O:0	2,51,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	11535	G	T	G	16	ignore low frequency variant	Pass	False	False	True	79	276	28	20	0.02531645569620253	0.0	A:0:C:0:G:76:T:2:N:0:O:1	A:0:C:0:G:276:T:0:N:0:O:0	2,50,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	76	28	20	0.08602150537634409	0.0	A:0:C:84:G:0:T:8:N:0:O:1	A:1:C:75:G:0:T:0:N:0:O:0	0,64,8,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	92	28	20	0.027777777777777776	0.0	A:104:C:0:G:0:T:3:N:0:O:1	A:92:C:0:G:0:T:0:N:0:O:0	3,47,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	186	28	20	0.03125	0.0	A:61:C:0:G:2:T:0:N:0:O:1	A:186:C:0:G:0:T:0:N:0:O:0	0,45,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	187	28	20	0.019801980198019802	0.0	A:0:C:86:G:0:T:2:N:0:O:13	A:0:C:187:G:0:T:0:N:0:O:0	0,66,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	144	28	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:144:T:0:N:0:O:0	2,24,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	12452	C	A	C	16	ignore low frequency variant	Pass	False	False	True	157	264	28	20	0.025477707006369428	0.0	A:4:C:146:G:0:T:0:N:0:O:7	A:0:C:264:G:0:T:0:N:0:O:0	0,86,4,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	12453	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	265	28	20	0.0196078431372549	0.0	A:0:C:147:G:0:T:3:N:0:O:3	A:0:C:265:G:0:T:0:N:0:O:0	0,94,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	12488	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	131	28	20	0.021052631578947368	0.0	A:1:C:90:G:0:T:2:N:0:O:2	A:0:C:131:G:0:T:0:N:0:O:0	0,48,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	131	28	20	0.028169014084507043	0.0	A:0:C:69:G:0:T:2:N:0:O:0	A:0:C:131:G:0:T:0:N:0:O:0	0,50,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	126	28	20	0.024691358024691357	0.0	A:0:C:77:G:0:T:2:N:0:O:2	A:0:C:126:G:0:T:0:N:0:O:0	0,37,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	126	28	20	0.0380952380952381	0.0	A:4:C:0:G:100:T:0:N:0:O:1	A:0:C:0:G:126:T:0:N:0:O:0	4,41,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	200	117	28	20	0.02	0.0	A:0:C:4:G:0:T:183:N:0:O:13	A:0:C:0:G:0:T:117:N:0:O:0	0,119,4,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	117	28	20	0.02717391304347826	0.0	A:5:C:0:G:178:T:0:N:0:O:1	A:0:C:0:G:117:T:0:N:0:O:0	5,88,0,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	217	117	28	20	0.03225806451612903	0.0	A:7:C:0:G:0:T:187:N:0:O:23	A:0:C:0:G:0:T:117:N:0:O:0	7,116,0,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	117	28	20	0.025510204081632654	0.0	A:173:C:0:G:5:T:0:N:0:O:18	A:117:C:0:G:0:T:0:N:0:O:0	5,91,0,105	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	138	28	20	0.036585365853658534	0.0	A:0:C:79:G:0:T:3:N:0:O:0	A:0:C:138:G:0:T:0:N:0:O:0	0,79,3,3	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	138	28	20	0.060240963855421686	0.0	A:5:C:0:G:72:T:0:N:0:O:6	A:0:C:0:G:138:T:0:N:0:O:0	5,36,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	138	28	20	0.022727272727272728	0.0	A:86:C:0:G:2:T:0:N:0:O:0	A:137:C:1:G:0:T:0:N:0:O:0	2,39,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	100	28	20	0.03409090909090909	0.01	A:3:C:81:G:0:T:0:N:0:O:4	A:1:C:99:G:0:T:0:N:0:O:0	3,47,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13707	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	192	28	20	0.020833333333333332	0.0	A:91:C:0:G:2:T:0:N:0:O:3	A:192:C:0:G:0:T:0:N:0:O:0	2,28,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	192	28	20	0.030927835051546393	0.0	A:3:C:1:G:93:T:0:N:0:O:0	A:0:C:0:G:191:T:1:N:0:O:0	3,35,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	192	28	20	0.0392156862745098	0.0	A:46:C:0:G:2:T:0:N:0:O:3	A:192:C:0:G:0:T:0:N:0:O:0	0,3,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	191	28	20	0.025	0.0	A:0:C:75:G:0:T:2:N:0:O:3	A:0:C:191:G:0:T:0:N:0:O:0	0,58,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	191	28	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	2,31,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	80	191	28	20	0.975	1.0	A:0:C:2:G:0:T:78:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	38,40,40,40	314.46	1086.2	yes	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	191	28	20	0.03225806451612903	0.0	A:0:C:90:G:0:T:3:N:0:O:0	A:1:C:190:G:0:T:0:N:0:O:0	0,52,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	166	28	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:2:C:164:G:0:T:0:N:0:O:0	0,66,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	188	28	20	0.021505376344086023	0.0	A:90:C:0:G:2:T:0:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:0	2,40,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	261	28	20	0.029411764705882353	0.0	A:3:C:0:G:97:T:0:N:0:O:2	A:0:C:0:G:261:T:0:N:0:O:0	3,37,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	260	28	20	0.03896103896103896	0.0	A:0:C:3:G:0:T:74:N:0:O:0	A:0:C:0:G:0:T:260:N:0:O:0	0,68,3,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	15657	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	187	28	20	0.022222222222222223	0.0	A:131:C:0:G:3:T:0:N:0:O:1	A:187:C:0:G:0:T:0:N:0:O:0	3,84,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	15658	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	187	28	20	0.02054794520547945	0.0	A:3:C:0:G:143:T:0:N:0:O:0	A:0:C:0:G:184:T:3:N:0:O:0	3,87,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	187	28	20	0.022900763358778626	0.0	A:128:C:0:G:3:T:0:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	3,73,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	180	28	20	0.037037037037037035	0.0	A:0:C:52:G:0:T:2:N:0:O:0	A:1:C:179:G:0:T:0:N:0:O:0	0,29,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	181	28	20	0.027777777777777776	0.0	A:3:C:0:G:97:T:0:N:0:O:8	A:0:C:0:G:181:T:0:N:0:O:0	2,26,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	25	28	20	0.03488372093023256	0.0	A:0:C:0:G:3:T:80:N:0:O:3	A:0:C:0:G:0:T:25:N:0:O:0	3,28,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	25	28	20	0.03571428571428571	0.0	A:0:C:0:G:102:T:4:N:0:O:6	A:0:C:0:G:25:T:0:N:0:O:0	4,53,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	16713	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	38	28	20	0.0196078431372549	0.0	A:0:C:2:G:0:T:96:N:0:O:4	A:0:C:0:G:0:T:38:N:0:O:0	0,64,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	27	28	20	0.030303030303030304	0.0	A:3:C:0:G:93:T:0:N:0:O:3	A:0:C:0:G:27:T:0:N:0:O:0	3,32,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	16822	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	213	28	20	0.023255813953488372	0.0	A:1:C:0:G:40:T:0:N:0:O:2	A:0:C:0:G:213:T:0:N:0:O:0	1,11,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	213	28	20	0.030927835051546393	0.0	A:0:C:0:G:3:T:92:N:0:O:2	A:0:C:3:G:0:T:210:N:0:O:0	0,40,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	213	28	20	0.024390243902439025	0.0	A:80:C:0:G:2:T:0:N:0:O:0	A:213:C:0:G:0:T:0:N:0:O:0	0,26,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	213	28	20	0.03333333333333333	0.0	A:86:C:3:G:0:T:0:N:0:O:1	A:213:C:0:G:0:T:0:N:0:O:0	3,28,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	199	336	28	20	0.020100502512562814	0.0	A:4:C:0:G:193:T:0:N:0:O:2	A:0:C:0:G:335:T:1:N:0:O:0	4,32,0,167	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	140	28	20	0.031578947368421054	0.0	A:0:C:90:G:0:T:3:N:0:O:2	A:1:C:139:G:0:T:0:N:0:O:0	0,75,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	140	28	20	0.04395604395604396	0.0	A:4:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:140:T:0:N:0:O:0	4,32,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	140	28	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:140:G:0:T:0:N:0:O:0	0,59,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	175	28	20	0.0379746835443038	0.0	A:0:C:75:G:0:T:3:N:0:O:1	A:0:C:175:G:0:T:0:N:0:O:0	0,52,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	175	28	20	0.02608695652173913	0.0	A:103:C:0:G:0:T:3:N:0:O:9	A:175:C:0:G:0:T:0:N:0:O:0	0,55,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	175	28	20	0.05454545454545454	0.0	A:6:C:0:G:102:T:0:N:0:O:2	A:0:C:0:G:175:T:0:N:0:O:0	0,64,6,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	175	28	20	0.02247191011235955	0.0	A:0:C:82:G:0:T:2:N:0:O:5	A:0:C:175:G:0:T:0:N:0:O:0	0,58,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	18031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	167	335	28	20	0.023952095808383235	0.0	A:161:C:0:G:4:T:0:N:0:O:2	A:335:C:0:G:0:T:0:N:0:O:0	4,74,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	172	28	20	0.021052631578947368	0.0	A:2:C:0:G:0:T:78:N:0:O:15	A:0:C:0:G:0:T:172:N:0:O:0	2,45,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	180	28	20	0.09333333333333334	0.0	A:0:C:0:G:7:T:68:N:0:O:0	A:0:C:0:G:0:T:180:N:0:O:0	3,26,4,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	158	28	20	0.039473684210526314	0.0	A:3:C:0:G:72:T:0:N:0:O:1	A:0:C:0:G:158:T:0:N:0:O:0	3,16,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	158	28	20	0.04878048780487805	0.0	A:37:C:0:G:0:T:2:N:0:O:2	A:157:C:0:G:1:T:0:N:0:O:0	1,13,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	158	28	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:158:T:0:N:0:O:0	1,26,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	18989	T	A	T	16	ignore low frequency variant	Pass	False	False	True	157	189	28	20	0.025477707006369428	0.0	A:4:C:0:G:0:T:152:N:0:O:1	A:0:C:0:G:0:T:189:N:0:O:0	4,59,0,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	11	28	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:44:N:0:O:0	A:0:C:0:G:0:T:11:N:0:O:0	0,21,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	14	28	20	0.02040816326530612	0.0	A:48:C:0:G:1:T:0:N:0:O:0	A:14:C:0:G:0:T:0:N:0:O:0	1,12,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	14	28	20	0.02040816326530612	0.0	A:1:C:0:G:48:T:0:N:0:O:0	A:0:C:0:G:14:T:0:N:0:O:0	1,12,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	18	28	20	0.02	0.0	A:0:C:49:G:0:T:1:N:0:O:0	A:0:C:18:G:0:T:0:N:0:O:0	0,31,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19381	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	19	28	20	0.025	0.0	A:0:C:1:G:0:T:37:N:0:O:2	A:0:C:0:G:0:T:19:N:0:O:0	0,21,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19484	C	T	C	1	near depth threshold	Alarm	False	False	True	31	18	28	20	0.0967741935483871	0.0	A:0:C:27:G:0:T:3:N:0:O:1	A:0:C:18:G:0:T:0:N:0:O:0	0,24,3,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	19485	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	18	28	20	0.02040816326530612	0.0	A:1:C:0:G:0:T:46:N:0:O:2	A:0:C:0:G:0:T:18:N:0:O:0	0,30,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19488	C	G	C	16	ignore low frequency variant	Pass	False	False	True	47	18	28	20	0.02127659574468085	0.0	A:0:C:46:G:1:T:0:N:0:O:0	A:0:C:18:G:0:T:0:N:0:O:0	0,28,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	187	179	28	20	0.016042780748663103	0.0	A:3:C:0:G:0:T:143:N:0:O:41	A:0:C:0:G:0:T:179:N:0:O:0	0,77,3,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	221	347	28	20	0.02262443438914027	0.0	A:209:C:0:G:5:T:0:N:0:O:7	A:347:C:0:G:0:T:0:N:0:O:0	5,76,0,145	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	197	28	20	0.028985507246376812	0.0	A:0:C:0:G:2:T:67:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	2,7,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	20	28	20	0.0989010989010989	0.0	A:0:C:0:G:75:T:9:N:0:O:7	A:0:C:0:G:20:T:0:N:0:O:0	0,66,9,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	35	28	20	0.04424778761061947	0.0	A:0:C:107:G:0:T:5:N:0:O:1	A:0:C:35:G:0:T:0:N:0:O:0	0,65,5,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	21353	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	34	28	20	0.021505376344086023	0.029411764705882353	A:0:C:0:G:91:T:2:N:0:O:0	A:0:C:0:G:33:T:1:N:0:O:0	0,37,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	21633	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	113	28	20	0.020618556701030927	0.0	A:2:C:0:G:0:T:94:N:0:O:1	A:0:C:0:G:0:T:113:N:0:O:0	1,49,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	180	28	20	0.034013605442176874	0.0	A:0:C:128:G:0:T:5:N:0:O:14	A:1:C:179:G:0:T:0:N:0:O:0	0,113,5,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	180	28	20	0.05673758865248227	0.0	A:0:C:8:G:0:T:129:N:0:O:4	A:0:C:0:G:0:T:180:N:0:O:0	0,103,8,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	218	180	28	20	0.027522935779816515	0.0	A:6:C:0:G:192:T:0:N:0:O:20	A:0:C:0:G:180:T:0:N:0:O:0	6,100,0,118	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	165	182	28	20	0.024242424242424242	0.005494505494505495	A:4:C:0:G:160:T:0:N:0:O:1	A:1:C:1:G:180:T:0:N:0:O:0	4,98,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	139	180	28	20	0.02158273381294964	0.0	A:0:C:0:G:3:T:136:N:0:O:0	A:0:C:0:G:0:T:180:N:0:O:0	3,46,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	22375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	23	28	20	0.025	0.0	A:116:C:0:G:3:T:0:N:0:O:1	A:23:C:0:G:0:T:0:N:0:O:0	3,52,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	132	137	28	20	0.9545454545454546	1.0	A:0:C:0:G:126:T:0:N:0:O:6	A:0:C:0:G:137:T:0:N:0:O:0	66,72,60,60	483.703	1777.2	yes	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	171	28	20	0.024096385542168676	0.0	A:2:C:0:G:77:T:0:N:0:O:4	A:0:C:0:G:169:T:1:N:0:O:1	2,18,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23656	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	171	28	20	0.036036036036036036	0.0	A:104:C:0:G:4:T:0:N:0:O:3	A:171:C:0:G:0:T:0:N:0:O:0	4,47,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23822	T	C	T	16	ignore low frequency variant	Pass	False	False	True	242	279	28	20	0.02066115702479339	0.0	A:0:C:5:G:0:T:237:N:0:O:0	A:0:C:0:G:0:T:279:N:0:O:0	0,122,5,120	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23836	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	142	28	20	0.021739130434782608	0.0	A:2:C:0:G:0:T:90:N:0:O:0	A:0:C:0:G:0:T:142:N:0:O:0	2,22,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	142	28	20	0.11842105263157894	0.007042253521126761	A:0:C:67:G:0:T:9:N:0:O:0	A:0:C:141:G:0:T:1:N:0:O:0	0,50,9,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	142	28	20	0.031914893617021274	0.014084507042253521	A:0:C:3:G:0:T:91:N:0:O:0	A:0:C:2:G:0:T:140:N:0:O:0	0,53,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	126	142	28	20	0.03968253968253968	0.0	A:121:C:0:G:0:T:5:N:0:O:0	A:142:C:0:G:0:T:0:N:0:O:0	4,50,1,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	142	28	20	0.0684931506849315	0.0	A:5:C:0:G:0:T:68:N:0:O:0	A:0:C:0:G:0:T:142:N:0:O:0	5,14,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	142	28	20	0.04395604395604396	0.0	A:4:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:142:T:0:N:0:O:0	4,14,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	132	28	20	0.05555555555555555	0.007575757575757576	A:0:C:59:G:0:T:4:N:0:O:9	A:0:C:131:G:0:T:1:N:0:O:0	0,59,4,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	132	28	20	0.023255813953488372	0.0	A:2:C:0:G:81:T:0:N:0:O:3	A:0:C:0:G:132:T:0:N:0:O:0	2,14,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24397	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	132	28	20	0.018018018018018018	0.0	A:0:C:0:G:2:T:98:N:0:O:11	A:0:C:0:G:0:T:132:N:0:O:0	0,48,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	132	28	20	0.02040816326530612	0.0	A:0:C:0:G:95:T:2:N:0:O:1	A:1:C:0:G:131:T:0:N:0:O:0	0,41,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	132	28	20	0.03571428571428571	0.0	A:3:C:0:G:77:T:0:N:0:O:4	A:0:C:0:G:131:T:1:N:0:O:0	1,45,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	155	165	28	20	0.04516129032258064	0.006060606060606061	A:7:C:141:G:0:T:3:N:0:O:4	A:1:C:164:G:0:T:0:N:0:O:0	6,78,1,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	193	165	28	20	0.025906735751295335	0.0	A:176:C:0:G:0:T:5:N:0:O:12	A:165:C:0:G:0:T:0:N:0:O:0	5,126,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	165	28	20	0.020134228187919462	0.0	A:0:C:142:G:0:T:3:N:0:O:4	A:0:C:165:G:0:T:0:N:0:O:0	0,108,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	142	28	20	0.047058823529411764	0.0	A:81:C:0:G:4:T:0:N:0:O:0	A:142:C:0:G:0:T:0:N:0:O:0	4,46,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	142	28	20	0.038834951456310676	0.0	A:4:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:142:T:0:N:0:O:0	0,84,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	142	28	20	0.033707865168539325	0.0	A:0:C:3:G:0:T:86:N:0:O:0	A:0:C:0:G:0:T:142:N:0:O:0	0,75,3,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	44	142	28	20	0.06818181818181818	0.0	A:0:C:3:G:0:T:37:N:0:O:4	A:0:C:0:G:0:T:142:N:0:O:0	3,40,0,4	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	25135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	174	28	20	0.023255813953488372	0.0	A:2:C:0:G:82:T:0:N:0:O:2	A:0:C:0:G:173:T:0:N:0:O:1	2,57,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	174	28	20	0.02040816326530612	0.0	A:96:C:2:G:0:T:0:N:0:O:0	A:174:C:0:G:0:T:0:N:0:O:0	2,75,0,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	157	28	20	0.019417475728155338	0.0	A:96:C:0:G:2:T:0:N:0:O:5	A:157:C:0:G:0:T:0:N:0:O:0	2,30,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25460	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	157	28	20	0.025210084033613446	0.0	A:0:C:115:G:0:T:3:N:0:O:1	A:0:C:157:G:0:T:0:N:0:O:0	1,63,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	157	28	20	0.02912621359223301	0.0	A:0:C:0:G:3:T:97:N:0:O:3	A:0:C:0:G:0:T:157:N:0:O:0	3,46,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	128	157	28	20	1.0	1.0	A:0:C:0:G:0:T:128:N:0:O:0	A:0:C:0:G:0:T:157:N:0:O:0	57,57,71,71	210.0	2116.3	yes	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	25592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	157	28	20	0.021739130434782608	0.0	A:45:C:0:G:1:T:0:N:0:O:0	A:157:C:0:G:0:T:0:N:0:O:0	1,3,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	172	28	20	0.038461538461538464	0.005813953488372093	A:4:C:66:G:0:T:0:N:0:O:34	A:1:C:171:G:0:T:0:N:0:O:0	3,32,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	62	172	28	20	0.06451612903225806	0.005813953488372093	A:57:C:4:G:0:T:0:N:0:O:1	A:171:C:1:G:0:T:0:N:0:O:0	2,43,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	172	28	20	0.02631578947368421	0.0	A:0:C:111:G:0:T:3:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	0,74,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	172	28	20	0.020618556701030927	0.0	A:90:C:0:G:2:T:0:N:0:O:5	A:172:C:0:G:0:T:0:N:0:O:0	2,35,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	172	28	20	0.06153846153846154	0.0	A:59:C:0:G:4:T:0:N:0:O:2	A:172:C:0:G:0:T:0:N:0:O:0	4,14,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	189	28	20	0.02702702702702703	0.0	A:106:C:0:G:3:T:0:N:0:O:2	A:189:C:0:G:0:T:0:N:0:O:0	2,55,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26065	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	287	28	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:287:T:0:N:0:O:0	2,49,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26127	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	287	28	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:287:C:0:G:0:T:0:N:0:O:0	0,59,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	172	28	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	0,61,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26494	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	172	28	20	0.023529411764705882	0.0	A:0:C:0:G:2:T:83:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	2,38,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	172	28	20	0.020202020202020204	0.0	A:2:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:171:T:1:N:0:O:0	2,55,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26533	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	172	28	20	0.02247191011235955	0.0	A:0:C:87:G:0:T:2:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	2,35,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	153	28	20	0.022058823529411766	0.0	A:131:C:0:G:3:T:0:N:0:O:2	A:153:C:0:G:0:T:0:N:0:O:0	3,76,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26600	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	153	28	20	0.025	0.0	A:0:C:115:G:0:T:3:N:0:O:2	A:0:C:153:G:0:T:0:N:0:O:0	3,82,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	152	28	20	0.02586206896551724	0.0	A:0:C:0:G:3:T:113:N:0:O:0	A:0:C:0:G:0:T:152:N:0:O:0	3,67,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	153	28	20	0.020134228187919462	0.0	A:0:C:3:G:0:T:146:N:0:O:0	A:0:C:0:G:0:T:153:N:0:O:0	0,107,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26703	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	153	28	20	0.022900763358778626	0.0	A:127:C:0:G:3:T:0:N:0:O:1	A:153:C:0:G:0:T:0:N:0:O:0	3,65,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	153	28	20	0.058823529411764705	0.0	A:92:C:0:G:0:T:6:N:0:O:4	A:153:C:0:G:0:T:0:N:0:O:0	6,32,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	153	28	20	0.038461538461538464	0.0	A:3:C:0:G:75:T:0:N:0:O:0	A:0:C:0:G:153:T:0:N:0:O:0	3,9,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	153	28	20	0.03968253968253968	0.0	A:121:C:0:G:5:T:0:N:0:O:0	A:153:C:0:G:0:T:0:N:0:O:0	5,70,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	143	28	20	0.02531645569620253	0.0	A:76:C:0:G:2:T:0:N:0:O:1	A:143:C:0:G:0:T:0:N:0:O:0	2,24,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	143	28	20	0.02631578947368421	0.0	A:2:C:0:G:73:T:0:N:0:O:1	A:0:C:0:G:143:T:0:N:0:O:0	2,19,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	143	28	20	0.046875	0.0	A:0:C:59:G:0:T:3:N:0:O:2	A:0:C:143:G:0:T:0:N:0:O:0	0,55,3,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	143	28	20	0.025	0.0	A:0:C:75:G:1:T:2:N:0:O:2	A:0:C:143:G:0:T:0:N:0:O:0	0,69,2,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	143	28	20	0.08130081300813008	0.11888111888111888	A:0:C:113:G:0:T:10:N:0:O:0	A:0:C:126:G:0:T:17:N:0:O:0	6,60,4,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27479	T	C	T	16	ignore low frequency variant	Pass	False	False	True	248	215	28	20	0.020161290322580645	0.0	A:0:C:5:G:0:T:243:N:0:O:0	A:0:C:0:G:0:T:215:N:0:O:0	0,127,5,121	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	81	28	20	0.022988505747126436	0.0	A:83:C:0:G:2:T:0:N:0:O:2	A:81:C:0:G:0:T:0:N:0:O:0	2,37,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	81	28	20	0.03	0.0	A:3:C:89:G:0:T:0:N:0:O:8	A:0:C:81:G:0:T:0:N:0:O:0	2,59,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	81	28	20	0.02	0.0	A:112:C:0:G:0:T:3:N:0:O:35	A:81:C:0:G:0:T:0:N:0:O:0	2,94,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	59	28	20	0.025974025974025976	0.0	A:2:C:0:G:73:T:0:N:0:O:2	A:0:C:0:G:59:T:0:N:0:O:0	2,17,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	177	28	20	0.02631578947368421	0.0	A:3:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:177:T:0:N:0:O:0	3,45,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28401	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	148	28	20	0.02666666666666667	0.0	A:72:C:0:G:2:T:0:N:0:O:1	A:148:C:0:G:0:T:0:N:0:O:0	1,42,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	79	148	28	20	0.02531645569620253	0.0	A:72:C:0:G:1:T:2:N:0:O:4	A:148:C:0:G:0:T:0:N:0:O:0	1,27,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	148	28	20	0.030303030303030304	0.0	A:0:C:59:G:0:T:2:N:0:O:5	A:1:C:147:G:0:T:0:N:0:O:0	0,35,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	173	28	20	0.03260869565217391	0.0	A:3:C:1:G:88:T:0:N:0:O:0	A:0:C:0:G:170:T:3:N:0:O:0	3,39,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28586	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	173	28	20	0.02830188679245283	0.0	A:103:C:0:G:3:T:0:N:0:O:0	A:173:C:0:G:0:T:0:N:0:O:0	3,52,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	226	28	20	0.03529411764705882	0.0	A:0:C:79:G:0:T:3:N:0:O:3	A:0:C:226:G:0:T:0:N:0:O:0	0,32,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	235	28	20	0.03	0.0	A:3:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:234:T:1:N:0:O:0	3,6,0,94	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	234	28	20	0.023529411764705882	0.0	A:0:C:83:G:0:T:2:N:0:O:0	A:0:C:234:G:0:T:0:N:0:O:0	0,28,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	233	28	20	0.029411764705882353	0.0	A:0:C:64:G:0:T:2:N:0:O:2	A:1:C:232:G:0:T:0:N:0:O:0	0,19,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	29021	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	325	28	20	0.02097902097902098	0.0	A:0:C:3:G:0:T:138:N:0:O:2	A:0:C:0:G:0:T:325:N:0:O:0	0,113,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	326	28	20	0.04195804195804196	0.0	A:0:C:135:G:0:T:6:N:0:O:2	A:3:C:323:G:0:T:0:N:0:O:0	0,114,6,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	29101	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	173	28	20	0.02142857142857143	0.0	A:137:C:0:G:3:T:0:N:0:O:0	A:173:C:0:G:0:T:0:N:0:O:0	3,55,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	29109	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	173	28	20	0.022900763358778626	0.0	A:3:C:125:G:0:T:0:N:0:O:3	A:0:C:173:G:0:T:0:N:0:O:0	3,42,0,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	173	28	20	0.03225806451612903	0.005780346820809248	A:4:C:113:G:0:T:0:N:0:O:7	A:1:C:172:G:0:T:0:N:0:O:0	4,68,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	124	28	20	0.020833333333333332	0.0	A:2:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:124:T:0:N:0:O:0	1,17,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00038	artic-pipeline	NB04	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	321	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00038	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	175	28	20	0.022727272727272728	0.0	A:0:C:42:G:0:T:1:N:0:O:1	A:0:C:175:G:0:T:0:N:0:O:0	0,11,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	176	28	20	0.0196078431372549	0.0	A:0:C:1:G:0:T:49:N:0:O:1	A:0:C:0:G:0:T:176:N:0:O:0	0,14,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	178	28	20	0.029411764705882353	0.0	A:0:C:1:G:0:T:33:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:0	0,10,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	233	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	176	28	20	0.021739130434782608	0.0	A:0:C:45:G:0:T:1:N:0:O:0	A:4:C:172:G:0:T:0:N:0:O:0	0,10,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	234	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	175	28	20	0.02127659574468085	0.0	A:0:C:1:G:0:T:45:N:0:O:1	A:0:C:0:G:0:T:175:N:0:O:0	0,9,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	238	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	175	28	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:44:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,8,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	52	175	28	20	0.9230769230769231	1.0	A:0:C:0:G:1:T:48:N:0:O:3	A:0:C:0:G:0:T:175:N:0:O:0	5,8,43,44	483.703	1436.8	yes	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	175	28	20	0.02127659574468085	0.0	A:1:C:0:G:0:T:46:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	1,4,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	175	28	20	0.02	0.0	A:0:C:47:G:0:T:1:N:0:O:2	A:0:C:175:G:0:T:0:N:0:O:0	1,6,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	181	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:86:N:0:O:1	A:0:C:0:G:0:T:181:N:0:O:0	2,13,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	188	28	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:185:T:3:N:0:O:0	2,46,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	187	28	20	0.02877697841726619	0.0	A:135:C:0:G:4:T:0:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	4,38,0,101	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	206	28	20	0.0234375	0.0	A:0:C:125:G:0:T:3:N:0:O:0	A:1:C:205:G:0:T:0:N:0:O:0	3,107,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	206	28	20	0.03125	0.0	A:0:C:92:G:0:T:3:N:0:O:1	A:0:C:206:G:0:T:0:N:0:O:0	2,87,1,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	208	28	20	0.027777777777777776	0.0	A:2:C:0:G:55:T:0:N:0:O:15	A:0:C:0:G:206:T:0:N:0:O:2	2,20,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	206	28	20	0.05555555555555555	0.0	A:4:C:0:G:58:T:0:N:0:O:10	A:0:C:0:G:206:T:0:N:0:O:0	4,37,0,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	206	28	20	0.041666666666666664	0.0	A:3:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:205:T:1:N:0:O:0	3,39,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1344	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	77	28	20	0.025	0.0	A:2:C:0:G:0:T:78:N:0:O:0	A:0:C:0:G:0:T:77:N:0:O:0	0,32,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	136	28	20	0.033707865168539325	0.0	A:0:C:86:G:0:T:3:N:0:O:0	A:0:C:136:G:0:T:0:N:0:O:0	0,45,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	104	28	20	0.022222222222222223	0.0	A:2:C:0:G:85:T:0:N:0:O:3	A:0:C:0:G:104:T:0:N:0:O:0	1,40,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	191	28	20	0.015384615384615385	0.0	A:2:C:85:G:0:T:0:N:0:O:43	A:0:C:191:G:0:T:0:N:0:O:0	0,34,2,96	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	60	191	28	20	0.03333333333333333	0.0	A:56:C:2:G:0:T:0:N:0:O:2	A:191:C:0:G:0:T:0:N:0:O:0	1,20,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	191	28	20	0.02531645569620253	0.0	A:0:C:55:G:0:T:2:N:0:O:22	A:0:C:191:G:0:T:0:N:0:O:0	0,56,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	191	28	20	0.08823529411764706	0.0	A:0:C:9:G:0:T:91:N:0:O:2	A:0:C:0:G:0:T:191:N:0:O:0	0,32,9,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	190	28	20	0.021052631578947368	0.0	A:93:C:0:G:2:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	1,5,1,90	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1885	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	191	28	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,34,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	162	28	20	0.11538461538461539	0.0	A:15:C:0:G:114:T:0:N:0:O:1	A:0:C:0:G:162:T:0:N:0:O:0	15,39,0,91	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	2317	A	T	A	16	ignore low frequency variant	Pass	False	False	True	122	329	28	20	0.01639344262295082	0.0	A:96:C:0:G:0:T:2:N:0:O:24	A:328:C:0:G:0:T:0:N:0:O:1	1,42,1,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	115	329	28	20	0.9478260869565217	1.0	A:0:C:6:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:329:N:0:O:0	23,25,86,90	259.237	1161.5	yes	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	2625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	196	28	20	0.026455026455026454	0.0	A:5:C:0:G:184:T:0:N:0:O:0	A:0:C:0:G:195:T:1:N:0:O:0	5,85,0,104	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	196	28	20	0.020833333333333332	0.0	A:4:C:0:G:183:T:0:N:0:O:5	A:0:C:0:G:195:T:1:N:0:O:0	4,83,0,109	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	181	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	1,34,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	122	196	28	20	0.680327868852459	1.0	A:0:C:1:G:0:T:83:N:0:O:38	A:0:C:0:G:0:T:196:N:0:O:0	44,82,39,40	616.433	1430.6	yes	.	.	.	mixed position	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	80	180	28	20	0.025	0.0	A:0:C:0:G:63:T:2:N:0:O:15	A:0:C:0:G:180:T:0:N:0:O:0	0,56,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	154	179	28	20	0.01948051948051948	0.0	A:144:C:0:G:3:T:0:N:0:O:7	A:179:C:0:G:0:T:0:N:0:O:0	3,46,0,108	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	179	28	20	0.030303030303030304	0.0	A:1:C:94:G:0:T:3:N:0:O:1	A:0:C:179:G:0:T:0:N:0:O:0	0,45,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	3407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	179	28	20	0.027586206896551724	0.0	A:4:C:0:G:140:T:0:N:0:O:1	A:0:C:0:G:179:T:0:N:0:O:0	0,46,4,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	68	179	28	20	0.029411764705882353	0.0	A:63:C:0:G:0:T:2:N:0:O:3	A:179:C:0:G:0:T:0:N:0:O:0	1,25,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	179	28	20	0.02727272727272727	0.0	A:3:C:0:G:106:T:0:N:0:O:1	A:0:C:0:G:179:T:0:N:0:O:0	3,34,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3773	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	174	28	20	0.020202020202020204	0.0	A:0:C:96:G:0:T:2:N:0:O:1	A:1:C:173:G:0:T:0:N:0:O:0	0,70,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	133	28	20	0.02040816326530612	0.0	A:0:C:0:G:91:T:2:N:0:O:5	A:0:C:0:G:133:T:0:N:0:O:0	1,72,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	133	28	20	0.0425531914893617	0.0	A:4:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:132:T:1:N:0:O:0	0,71,4,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	133	28	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:133:G:0:T:0:N:0:O:0	0,88,2,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	127	28	20	0.028985507246376812	0.0	A:0:C:61:G:0:T:2:N:0:O:6	A:0:C:127:G:0:T:0:N:0:O:0	0,59,2,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	321	28	20	0.037037037037037035	0.0	A:7:C:0:G:181:T:0:N:0:O:1	A:0:C:0:G:321:T:0:N:0:O:0	0,109,7,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	321	28	20	0.03977272727272727	0.0	A:0:C:161:G:0:T:7:N:0:O:8	A:0:C:321:G:0:T:0:N:0:O:0	0,111,7,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	4427	T	G	T	16	ignore low frequency variant	Pass	False	False	True	215	197	28	20	0.023255813953488372	0.0	A:0:C:0:G:5:T:210:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	4,108,1,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	4523	G	A	A	17	accept high frequency variant	Pass	False	True	True	138	194	28	20	0.9927536231884058	1.0	A:137:C:0:G:0:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	69,70,68,68	140.0	602.4	yes	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	179	28	20	0.020833333333333332	0.00558659217877095	A:0:C:140:G:0:T:3:N:0:O:1	A:0:C:178:G:0:T:1:N:0:O:0	0,100,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	179	28	20	0.022556390977443608	0.0	A:0:C:129:G:0:T:3:N:0:O:1	A:1:C:178:G:0:T:0:N:0:O:0	0,109,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	4984	A	G	A	16	ignore low frequency variant	Pass	False	False	True	193	210	28	20	0.025906735751295335	0.0	A:188:C:0:G:5:T:0:N:0:O:0	A:210:C:0:G:0:T:0:N:0:O:0	5,84,0,109	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	146	51	28	20	0.03424657534246575	0.0	A:5:C:0:G:0:T:128:N:0:O:13	A:0:C:0:G:0:T:51:N:0:O:0	1,60,4,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5100	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	51	28	20	0.036585365853658534	0.0	A:0:C:62:G:0:T:3:N:0:O:17	A:1:C:50:G:0:T:0:N:0:O:0	3,75,0,7	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	51	28	20	0.02127659574468085	0.0	A:0:C:90:G:0:T:2:N:0:O:2	A:0:C:51:G:0:T:0:N:0:O:0	0,60,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	51	28	20	0.022988505747126436	0.0	A:83:C:0:G:0:T:2:N:0:O:2	A:51:C:0:G:0:T:0:N:0:O:0	2,21,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	51	28	20	0.024096385542168676	0.0	A:0:C:80:G:0:T:2:N:0:O:1	A:0:C:51:G:0:T:0:N:0:O:0	2,19,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	39	28	20	0.07291666666666667	0.0	A:87:C:0:G:7:T:0:N:0:O:2	A:39:C:0:G:0:T:0:N:0:O:0	3,36,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5284	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	39	28	20	0.030612244897959183	0.0	A:0:C:92:G:0:T:3:N:0:O:3	A:0:C:39:G:0:T:0:N:0:O:0	1,47,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	101	28	20	0.021505376344086023	0.0	A:91:C:0:G:2:T:0:N:0:O:0	A:101:C:0:G:0:T:0:N:0:O:0	2,37,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	183	28	20	0.02564102564102564	0.0	A:0:C:112:G:0:T:3:N:0:O:2	A:0:C:183:G:0:T:0:N:0:O:0	0,65,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	183	28	20	0.06666666666666667	0.00546448087431694	A:0:C:70:G:0:T:5:N:0:O:0	A:0:C:182:G:0:T:1:N:0:O:0	0,61,5,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	183	28	20	0.020618556701030927	0.0	A:2:C:0:G:93:T:0:N:0:O:2	A:0:C:0:G:183:T:0:N:0:O:0	2,22,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5813	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	183	28	20	0.0196078431372549	0.0	A:2:C:0:G:96:T:0:N:0:O:4	A:0:C:0:G:182:T:1:N:0:O:0	2,38,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	183	28	20	0.02040816326530612	0.0	A:0:C:92:G:0:T:2:N:0:O:4	A:1:C:182:G:0:T:0:N:0:O:0	1,53,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	183	28	20	0.034782608695652174	0.0	A:0:C:107:G:0:T:4:N:0:O:4	A:2:C:181:G:0:T:0:N:0:O:0	0,70,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	183	28	20	0.03296703296703297	0.0	A:0:C:86:G:0:T:3:N:0:O:2	A:0:C:183:G:0:T:0:N:0:O:0	0,67,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	183	28	20	0.020202020202020204	0.0	A:0:C:97:G:0:T:2:N:0:O:0	A:0:C:183:G:0:T:0:N:0:O:0	0,53,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6154	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	183	28	20	0.021739130434782608	0.0	A:135:C:0:G:0:T:3:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	0,71,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	169	28	20	0.028037383177570093	0.005917159763313609	A:0:C:101:G:0:T:3:N:0:O:3	A:0:C:168:G:0:T:1:N:0:O:0	0,77,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	171	28	20	0.025974025974025976	0.0	A:75:C:0:G:2:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	2,54,0,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6540	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	60	28	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:60:C:0:G:0:T:0:N:0:O:0	2,55,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	63	28	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:63:N:0:O:0	0,65,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	63	28	20	0.024691358024691357	0.0	A:0:C:79:G:0:T:2:N:0:O:0	A:0:C:63:G:0:T:0:N:0:O:0	0,58,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	164	55	28	20	0.04878048780487805	0.0	A:152:C:1:G:8:T:0:N:0:O:3	A:55:C:0:G:0:T:0:N:0:O:0	8,61,0,103	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	56	28	20	0.04294478527607362	0.0	A:0:C:152:G:0:T:7:N:0:O:4	A:0:C:55:G:0:T:0:N:0:O:1	1,92,6,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	6889	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	66	28	20	0.02	0.0	A:93:C:0:G:0:T:2:N:0:O:5	A:66:C:0:G:0:T:0:N:0:O:0	0,42,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	7030	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	45	28	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:88:N:0:O:7	A:0:C:0:G:0:T:45:N:0:O:0	1,44,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	74	45	28	20	0.14864864864864866	0.0	A:60:C:0:G:0:T:11:N:0:O:3	A:45:C:0:G:0:T:0:N:0:O:0	1,53,10,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	185	28	20	0.0410958904109589	0.0	A:3:C:0:G:67:T:0:N:0:O:3	A:0:C:0:G:184:T:1:N:0:O:0	3,18,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	185	28	20	0.05333333333333334	0.0	A:4:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:185:T:0:N:0:O:0	4,19,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	186	28	20	0.017241379310344827	0.0	A:0:C:85:G:1:T:2:N:0:O:28	A:1:C:184:G:0:T:0:N:0:O:1	0,88,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	83	28	20	0.04285714285714286	0.0	A:0:C:62:G:0:T:3:N:0:O:5	A:0:C:83:G:0:T:0:N:0:O:0	0,60,3,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	244	28	20	0.022556390977443608	0.0	A:130:C:0:G:3:T:0:N:0:O:0	A:244:C:0:G:0:T:0:N:0:O:0	3,52,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	269	28	20	0.019417475728155338	0.0	A:98:C:2:G:0:T:0:N:0:O:3	A:269:C:0:G:0:T:0:N:0:O:0	0,62,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	34	28	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:34:N:0:O:0	0,57,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	34	28	20	0.020618556701030927	0.0	A:94:C:0:G:0:T:2:N:0:O:1	A:34:C:0:G:0:T:0:N:0:O:0	2,45,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	34	28	20	0.03333333333333333	0.0	A:0:C:3:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:34:N:0:O:0	0,66,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	21	28	20	0.043010752688172046	0.0	A:0:C:4:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:21:N:0:O:0	0,67,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	20	28	20	0.024390243902439025	0.0	A:0:C:1:G:0:T:39:N:0:O:1	A:0:C:0:G:0:T:20:N:0:O:0	1,40,0,1	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8857	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	76	28	20	0.027522935779816515	0.0	A:0:C:0:G:3:T:106:N:0:O:0	A:0:C:0:G:0:T:76:N:0:O:0	0,55,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	62	28	20	0.028985507246376812	0.0	A:2:C:1:G:64:T:0:N:0:O:2	A:0:C:0:G:62:T:0:N:0:O:0	2,5,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	199	173	28	20	0.03015075376884422	0.0	A:6:C:0:G:0:T:177:N:0:O:16	A:0:C:0:G:0:T:173:N:0:O:0	5,96,1,103	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	225	28	20	0.026845637583892617	0.0	A:0:C:4:G:0:T:144:N:0:O:1	A:0:C:0:G:0:T:225:N:0:O:0	0,125,4,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	183	28	20	0.021505376344086023	0.0	A:0:C:67:G:0:T:2:N:0:O:24	A:0:C:182:G:0:T:0:N:0:O:1	2,88,0,5	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	9797	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	134	28	20	0.03508771929824561	0.0	A:2:C:0:G:55:T:0:N:0:O:0	A:0:C:0:G:134:T:0:N:0:O:0	2,35,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	279	28	20	0.0196078431372549	0.0	A:0:C:1:G:0:T:49:N:0:O:1	A:0:C:0:G:0:T:279:N:0:O:0	0,48,1,3	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	9886	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	153	28	20	0.019230769230769232	0.0	A:2:C:96:G:0:T:0:N:0:O:6	A:0:C:153:G:0:T:0:N:0:O:0	0,28,2,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	153	28	20	0.023255813953488372	0.0	A:2:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:153:T:0:N:0:O:0	2,11,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	153	28	20	0.018867924528301886	0.0	A:0:C:94:G:0:T:2:N:0:O:10	A:0:C:153:G:0:T:0:N:0:O:0	2,21,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10130	A	T	A	16	ignore low frequency variant	Pass	False	False	True	200	279	28	20	0.02	0.0	A:194:C:0:G:0:T:4:N:0:O:2	A:279:C:0:G:0:T:0:N:0:O:0	4,107,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10190	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	126	28	20	0.019417475728155338	0.0	A:0:C:2:G:0:T:98:N:0:O:3	A:0:C:0:G:0:T:126:N:0:O:0	0,64,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	126	28	20	0.037037037037037035	0.0	A:3:C:0:G:78:T:0:N:0:O:0	A:0:C:0:G:126:T:0:N:0:O:0	3,17,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	170	28	20	0.03125	0.0	A:0:C:92:G:0:T:3:N:0:O:1	A:0:C:170:G:0:T:0:N:0:O:0	0,61,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	198	28	20	0.029411764705882353	0.0	A:0:C:99:G:0:T:3:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,65,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	198	28	20	0.03529411764705882	0.0	A:80:C:1:G:3:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	3,37,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10712	C	T	T	10	mixed variant with conflicting illumina support	Check	False	True	True	224	357	28	20	0.7232142857142857	0.9971988795518207	A:0:C:4:G:0:T:162:N:0:O:58	A:1:C:0:G:0:T:356:N:0:O:0	70,132,92,92	63.216	978.9	yes	.	.	.	mixed position	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	193	28	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:77:N:0:O:8	A:0:C:0:G:0:T:193:N:0:O:0	0,64,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	193	28	20	0.020833333333333332	0.0	A:0:C:93:G:1:T:2:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,66,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	194	28	20	0.0196078431372549	0.005154639175257732	A:2:C:97:G:0:T:0:N:0:O:3	A:1:C:192:G:0:T:0:N:0:O:1	2,46,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	10986	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	193	28	20	0.037037037037037035	0.0	A:3:C:0:G:78:T:0:N:0:O:0	A:0:C:0:G:192:T:1:N:0:O:0	3,19,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	11082	T	G	T	1	near depth threshold	Alarm	False	False	True	25	164	28	20	0.04	0.0	A:0:C:0:G:1:T:23:N:0:O:1	A:0:C:0:G:0:T:164:N:0:O:0	0,11,1,14	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	176	28	20	0.04081632653061224	0.0	A:94:C:0:G:0:T:4:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	4,59,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	11941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	181	28	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:3:C:178:G:0:T:0:N:0:O:0	2,44,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	185	183	28	20	0.021621621621621623	0.0	A:0:C:0:G:128:T:4:N:0:O:53	A:0:C:0:G:181:T:0:N:0:O:2	0,91,4,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	179	28	20	0.06493506493506493	0.0	A:72:C:0:G:5:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	0,60,5,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	336	28	20	0.02158273381294964	0.0	A:3:C:0:G:132:T:0:N:0:O:4	A:0:C:0:G:336:T:0:N:0:O:0	3,31,0,108	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	155	28	20	0.021739130434782608	0.0	A:2:C:0:G:86:T:0:N:0:O:4	A:0:C:0:G:155:T:0:N:0:O:0	2,28,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	84	142	28	20	0.023809523809523808	0.0	A:2:C:81:G:0:T:0:N:0:O:1	A:0:C:142:G:0:T:0:N:0:O:0	0,24,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12554	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	142	28	20	0.0196078431372549	0.0	A:2:C:0:G:94:T:0:N:0:O:6	A:0:C:0:G:142:T:0:N:0:O:0	0,18,2,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	142	28	20	0.022727272727272728	0.0	A:0:C:2:G:0:T:85:N:0:O:1	A:0:C:0:G:0:T:142:N:0:O:0	0,25,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	142	28	20	0.021052631578947368	0.0	A:0:C:91:G:0:T:2:N:0:O:2	A:0:C:142:G:0:T:0:N:0:O:0	2,28,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	142	28	20	0.02127659574468085	0.0	A:91:C:0:G:0:T:2:N:0:O:1	A:142:C:0:G:0:T:0:N:0:O:0	1,13,1,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	142	28	20	0.10204081632653061	0.0	A:0:C:43:G:0:T:5:N:0:O:1	A:1:C:141:G:0:T:0:N:0:O:0	0,27,5,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	128	28	20	0.02666666666666667	0.0	A:2:C:0:G:73:T:0:N:0:O:0	A:0:C:0:G:127:T:1:N:0:O:0	0,19,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	128	28	20	0.027522935779816515	0.0	A:3:C:3:G:0:T:101:N:0:O:2	A:0:C:0:G:0:T:128:N:0:O:0	0,58,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	12854	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	128	28	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:128:G:0:T:0:N:0:O:0	0,36,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	210	160	28	20	0.02857142857142857	0.0	A:6:C:0:G:204:T:0:N:0:O:0	A:0:C:0:G:160:T:0:N:0:O:0	6,68,0,142	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	202	160	28	20	0.019801980198019802	0.0	A:0:C:191:G:0:T:4:N:0:O:7	A:0:C:160:G:0:T:0:N:0:O:0	0,103,4,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13420	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	69	28	20	0.022727272727272728	0.0	A:85:C:0:G:2:T:0:N:0:O:1	A:69:C:0:G:0:T:0:N:0:O:0	2,47,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	80	28	20	0.021739130434782608	0.0	A:89:C:0:G:1:T:2:N:0:O:0	A:80:C:0:G:0:T:0:N:0:O:0	1,58,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13444	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	81	28	20	0.02	0.0	A:94:C:1:G:2:T:0:N:0:O:3	A:81:C:0:G:0:T:0:N:0:O:0	2,59,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	85	28	20	0.140625	0.0	A:9:C:0:G:50:T:0:N:0:O:5	A:0:C:0:G:85:T:0:N:0:O:0	9,22,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	85	28	20	0.02040816326530612	0.0	A:1:C:47:G:0:T:1:N:0:O:0	A:0:C:85:G:0:T:0:N:0:O:0	0,36,1,13	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	58	28	20	0.022727272727272728	0.0	A:2:C:77:G:0:T:0:N:0:O:9	A:0:C:58:G:0:T:0:N:0:O:0	2,52,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	55	28	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:55:C:0:G:0:T:0:N:0:O:0	2,54,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13671	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	172	28	20	0.031746031746031744	0.0	A:0:C:54:G:0:T:2:N:0:O:7	A:0:C:172:G:0:T:0:N:0:O:0	0,20,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	170	28	20	0.023255813953488372	0.0058823529411764705	A:81:C:0:G:2:T:0:N:0:O:3	A:169:C:0:G:1:T:0:N:0:O:0	0,0,2,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	188	28	20	0.03125	0.0	A:3:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	3,31,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	188	28	20	0.028846153846153848	0.0	A:0:C:0:G:101:T:3:N:0:O:0	A:0:C:0:G:188:T:0:N:0:O:0	3,40,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	188	28	20	0.0196078431372549	0.0	A:98:C:0:G:2:T:0:N:0:O:2	A:188:C:0:G:0:T:0:N:0:O:0	2,33,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	167	28	20	0.021052631578947368	0.0	A:2:C:0:G:90:T:0:N:0:O:3	A:0:C:0:G:167:T:0:N:0:O:0	2,33,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	194	28	20	0.037037037037037035	0.0	A:4:C:0:G:104:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	4,46,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	101	194	28	20	1.0	1.0	A:0:C:0:G:0:T:101:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	58,58,43,43	465.826	1442.7	yes	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	14614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	192	28	20	0.03296703296703297	0.0	A:3:C:87:G:0:T:0:N:0:O:1	A:0:C:192:G:0:T:0:N:0:O:0	3,52,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	192	28	20	0.031578947368421054	0.0	A:91:C:0:G:0:T:3:N:0:O:1	A:192:C:0:G:0:T:0:N:0:O:0	3,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	102	28	20	0.020618556701030927	0.0	A:2:C:91:G:0:T:0:N:0:O:4	A:0:C:102:G:0:T:0:N:0:O:0	2,58,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	118	28	20	0.06097560975609756	0.0	A:5:C:0:G:76:T:0:N:0:O:1	A:0:C:0:G:118:T:0:N:0:O:0	5,33,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	15158	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	84	28	20	0.02	0.0	A:97:C:2:G:0:T:0:N:0:O:1	A:84:C:0:G:0:T:0:N:0:O:0	2,62,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	15288	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	191	28	20	0.022727272727272728	0.0	A:0:C:3:G:0:T:129:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,74,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	191	28	20	0.020618556701030927	0.0	A:95:C:0:G:2:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	0,52,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	189	28	20	0.02702702702702703	0.0	A:0:C:0:G:108:T:3:N:0:O:0	A:1:C:0:G:188:T:0:N:0:O:0	0,86,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	174	28	20	0.09230769230769231	0.0	A:0:C:58:G:0:T:6:N:0:O:1	A:0:C:174:G:0:T:0:N:0:O:0	0,30,6,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	174	28	20	0.040983606557377046	0.0	A:0:C:112:G:0:T:5:N:0:O:5	A:0:C:174:G:0:T:0:N:0:O:0	0,70,5,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	58	28	20	0.022988505747126436	0.0	A:1:C:82:G:0:T:2:N:0:O:2	A:0:C:58:G:0:T:0:N:0:O:0	0,46,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	13	28	20	0.027777777777777776	0.0	A:0:C:0:G:2:T:68:N:0:O:2	A:0:C:0:G:0:T:13:N:0:O:0	1,19,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	13	28	20	0.03614457831325301	0.0	A:0:C:0:G:79:T:3:N:0:O:1	A:0:C:0:G:13:T:0:N:0:O:0	2,33,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	23	28	20	0.024390243902439025	0.0	A:0:C:80:G:0:T:2:N:0:O:0	A:0:C:23:G:0:T:0:N:0:O:0	0,39,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	200	28	20	0.04807692307692308	0.0	A:0:C:0:G:5:T:98:N:0:O:1	A:0:C:3:G:0:T:197:N:0:O:0	0,40,5,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	178	200	28	20	0.028089887640449437	0.005	A:5:C:1:G:134:T:2:N:0:O:36	A:1:C:0:G:197:T:2:N:0:O:0	0,51,5,127	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	200	28	20	0.03409090909090909	0.0	A:85:C:0:G:3:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	0,29,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	200	28	20	0.020202020202020204	0.0	A:0:C:96:G:0:T:2:N:0:O:1	A:1:C:199:G:0:T:0:N:0:O:0	0,36,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17131	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	166	28	20	0.02127659574468085	0.0	A:0:C:2:G:0:T:90:N:0:O:2	A:0:C:0:G:0:T:166:N:0:O:0	0,52,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	167	28	20	0.022727272727272728	0.0	A:0:C:85:G:0:T:2:N:0:O:1	A:0:C:167:G:0:T:0:N:0:O:0	0,54,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	167	28	20	0.02702702702702703	0.0	A:0:C:70:G:0:T:2:N:0:O:2	A:0:C:167:G:0:T:0:N:0:O:0	0,57,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	167	28	20	0.027522935779816515	0.0	A:106:C:0:G:3:T:0:N:0:O:0	A:167:C:0:G:0:T:0:N:0:O:0	3,39,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17241	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	167	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:95:N:0:O:1	A:0:C:0:G:0:T:167:N:0:O:0	0,52,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	154	28	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:154:T:0:N:0:O:0	2,25,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	154	28	20	0.02127659574468085	0.0	A:0:C:91:G:0:T:2:N:0:O:1	A:0:C:154:G:0:T:0:N:0:O:0	0,47,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	170	28	20	0.06329113924050633	0.0	A:0:C:74:G:0:T:5:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,38,5,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	127	170	28	20	0.031496062992125984	0.0	A:109:C:0:G:0:T:4:N:0:O:14	A:170:C:0:G:0:T:0:N:0:O:0	0,38,4,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	170	28	20	0.07874015748031496	0.0	A:10:C:0:G:115:T:0:N:0:O:2	A:0:C:0:G:169:T:1:N:0:O:0	0,67,10,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17849	G	C	G	16	ignore low frequency variant	Pass	False	False	True	141	170	28	20	0.02127659574468085	0.0	A:0:C:3:G:133:T:0:N:0:O:5	A:0:C:0:G:169:T:1:N:0:O:0	0,66,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	170	28	20	0.04132231404958678	0.0	A:5:C:0:G:116:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	5,42,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	170	28	20	0.041666666666666664	0.0	A:4:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	4,23,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18014	C	A	C	16	ignore low frequency variant	Pass	False	False	True	259	333	28	20	0.023166023166023165	0.0	A:6:C:251:G:0:T:0:N:0:O:2	A:0:C:333:G:0:T:0:N:0:O:0	0,133,6,126	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	228	333	28	20	0.02631578947368421	0.003003003003003003	A:0:C:221:G:0:T:6:N:0:O:1	A:0:C:332:G:0:T:1:N:0:O:0	0,126,6,102	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	331	28	20	0.022388059701492536	0.0	A:3:C:0:G:131:T:0:N:0:O:0	A:0:C:0:G:331:T:0:N:0:O:0	3,11,0,123	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18348	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	178	28	20	0.023076923076923078	0.0	A:0:C:121:G:0:T:3:N:0:O:6	A:0:C:178:G:0:T:0:N:0:O:0	1,85,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	190	28	20	0.023809523809523808	0.0	A:0:C:0:G:2:T:82:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	1,27,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	178	28	20	0.0547945205479452	0.0	A:69:C:0:G:4:T:0:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	4,31,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	178	28	20	0.023809523809523808	0.0	A:2:C:0:G:81:T:0:N:0:O:1	A:0:C:0:G:177:T:1:N:0:O:0	2,30,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	37	178	28	20	0.05405405405405406	0.0	A:31:C:0:G:1:T:2:N:0:O:3	A:178:C:0:G:0:T:0:N:0:O:0	0,21,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	178	28	20	0.024390243902439025	0.0	A:0:C:0:G:2:T:80:N:0:O:0	A:0:C:1:G:0:T:177:N:0:O:0	2,34,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19289	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	5	28	20	0.0196078431372549	0.0	A:1:C:0:G:49:T:0:N:0:O:1	A:0:C:0:G:5:T:0:N:0:O:0	1,19,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19293	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	5	28	20	0.023255813953488372	0.0	A:0:C:1:G:0:T:41:N:0:O:1	A:0:C:0:G:0:T:5:N:0:O:0	0,19,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	7	28	20	0.02564102564102564	0.0	A:38:C:0:G:1:T:0:N:0:O:0	A:6:C:0:G:0:T:1:N:0:O:0	1,11,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19449	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	8	28	20	0.023255813953488372	0.0	A:0:C:1:G:0:T:40:N:0:O:2	A:0:C:0:G:0:T:8:N:0:O:0	0,17,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19452	T	A	T	16	ignore low frequency variant	Pass	False	False	True	45	8	28	20	0.022222222222222223	0.0	A:1:C:0:G:0:T:43:N:0:O:1	A:0:C:0:G:0:T:8:N:0:O:0	0,15,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19454	C	G	C	16	ignore low frequency variant	Pass	False	False	True	49	8	28	20	0.02040816326530612	0.0	A:0:C:44:G:1:T:0:N:0:O:4	A:0:C:8:G:0:T:0:N:0:O:0	0,14,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	8	28	20	0.046511627906976744	0.0	A:0:C:2:G:0:T:41:N:0:O:0	A:0:C:0:G:0:T:8:N:0:O:0	0,17,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19468	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	8	28	20	0.023809523809523808	0.125	A:1:C:1:G:0:T:40:N:0:O:0	A:0:C:1:G:0:T:7:N:0:O:0	0,16,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19478	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	8	28	20	0.02631578947368421	0.0	A:1:C:0:G:37:T:0:N:0:O:0	A:0:C:0:G:8:T:0:N:0:O:0	1,6,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19484	C	T	N	1	near depth threshold	Alarm	False	False	False	24	8	28	20	0.041666666666666664	0.0	A:0:C:23:G:0:T:1:N:0:O:0	A:0:C:8:G:0:T:0:N:0:O:0	0,14,1,10	.	55.6	.	depth near threshold	.	mismatch(n+s)	.	.	strand bias: low +AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	8	28	20	0.023809523809523808	0.0	A:0:C:1:G:0:T:40:N:0:O:1	A:0:C:0:G:0:T:8:N:0:O:0	0,19,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	8	28	20	0.024390243902439025	0.0	A:0:C:1:G:0:T:40:N:0:O:0	A:0:C:0:G:0:T:8:N:0:O:0	0,17,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19537	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	4	28	20	0.02	0.0	A:48:C:0:G:1:T:0:N:0:O:1	A:4:C:0:G:0:T:0:N:0:O:0	1,17,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19558	A	T	A	16	ignore low frequency variant	Pass	False	False	True	48	4	28	20	0.020833333333333332	0.0	A:47:C:0:G:0:T:1:N:0:O:0	A:4:C:0:G:0:T:0:N:0:O:0	1,6,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19565	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	4	28	20	0.02564102564102564	0.0	A:1:C:0:G:38:T:0:N:0:O:0	A:0:C:0:G:4:T:0:N:0:O:0	1,11,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	174	182	28	20	0.017241379310344827	0.0	A:3:C:0:G:0:T:126:N:0:O:45	A:0:C:0:G:0:T:182:N:0:O:0	0,68,3,106	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	182	28	20	0.036585365853658534	0.0	A:79:C:0:G:0:T:3:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	0,50,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	19763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	182	28	20	0.024793388429752067	0.0	A:0:C:115:G:0:T:3:N:0:O:3	A:0:C:182:G:0:T:0:N:0:O:0	0,60,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	19823	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	157	28	20	0.0196078431372549	0.0	A:98:C:0:G:2:T:0:N:0:O:2	A:157:C:0:G:0:T:0:N:0:O:0	1,35,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	202	28	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:202:G:0:T:0:N:0:O:0	0,56,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	47	28	20	0.02564102564102564	0.0	A:73:C:0:G:2:T:0:N:0:O:3	A:47:C:0:G:0:T:0:N:0:O:0	2,32,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	20568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	171	28	20	0.047619047619047616	0.011695906432748537	A:0:C:0:G:120:T:6:N:0:O:0	A:0:C:0:G:169:T:2:N:0:O:0	4,74,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	181	28	20	0.025974025974025976	0.0	A:2:C:0:G:75:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	2,35,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	182	28	20	0.018867924528301886	0.0	A:0:C:91:G:0:T:2:N:0:O:13	A:0:C:181:G:0:T:0:N:0:O:1	2,54,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	190	28	20	0.0196078431372549	0.0	A:0:C:98:G:0:T:2:N:0:O:2	A:0:C:190:G:0:T:0:N:0:O:0	0,45,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	190	28	20	0.03305785123966942	0.0	A:4:C:0:G:117:T:0:N:0:O:0	A:0:C:0:G:190:T:0:N:0:O:0	4,35,0,86	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	190	28	20	0.023809523809523808	0.0	A:82:C:0:G:2:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	0,1,2,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	191	28	20	0.016666666666666666	0.005235602094240838	A:2:C:0:G:98:T:0:N:0:O:20	A:1:C:0:G:189:T:0:N:0:O:1	0,13,2,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	184	28	20	0.03389830508474576	0.0	A:0:C:1:G:2:T:56:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	1,5,1,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21148	G	T	G	1	near depth threshold	Alarm	False	False	True	29	6	28	20	0.06896551724137931	0.0	A:0:C:0:G:23:T:2:N:0:O:4	A:0:C:0:G:6:T:0:N:0:O:0	0,18,2,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21191	C	T	C	1	near depth threshold	Alarm	False	False	True	26	10	28	20	0.11538461538461539	0.0	A:0:C:23:G:0:T:3:N:0:O:0	A:0:C:10:G:0:T:0:N:0:O:0	0,10,3,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21212	G	A	G	1	near depth threshold	Alarm	False	False	True	33	10	28	20	0.030303030303030304	0.0	A:1:C:0:G:32:T:0:N:0:O:0	A:0:C:0:G:10:T:0:N:0:O:0	1,12,0,21	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21256	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	10	28	20	0.027777777777777776	0.0	A:1:C:0:G:0:T:34:N:0:O:1	A:0:C:0:G:0:T:10:N:0:O:0	1,15,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21257	C	T	C	1	near depth threshold	Alarm	False	False	True	33	10	28	20	0.030303030303030304	0.0	A:0:C:32:G:0:T:1:N:0:O:0	A:0:C:10:G:0:T:0:N:0:O:0	1,13,0,20	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21309	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	10	28	20	0.027777777777777776	0.0	A:35:C:0:G:1:T:0:N:0:O:0	A:10:C:0:G:0:T:0:N:0:O:0	1,14,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21323	A	G	A	1	near depth threshold	Alarm	False	False	True	32	10	28	20	0.03125	0.0	A:31:C:0:G:1:T:0:N:0:O:0	A:10:C:0:G:0:T:0:N:0:O:0	0,14,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21324	T	C	T	1	near depth threshold	Alarm	False	False	True	31	10	28	20	0.03225806451612903	0.0	A:0:C:1:G:0:T:30:N:0:O:0	A:0:C:0:G:0:T:10:N:0:O:0	0,14,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21325	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	10	28	20	0.029411764705882353	0.0	A:1:C:0:G:33:T:0:N:0:O:0	A:0:C:0:G:10:T:0:N:0:O:0	0,14,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21326	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	10	28	20	0.027777777777777776	0.0	A:1:C:0:G:0:T:35:N:0:O:0	A:0:C:0:G:0:T:10:N:0:O:0	0,15,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21421	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	46	28	20	0.018018018018018018	0.0	A:93:C:0:G:0:T:2:N:0:O:16	A:46:C:0:G:0:T:0:N:0:O:0	0,42,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	55	28	20	0.02	0.0	A:0:C:2:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:55:N:0:O:0	0,44,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	21575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	55	28	20	0.031914893617021274	0.0	A:0:C:88:G:0:T:3:N:0:O:3	A:0:C:55:G:0:T:0:N:0:O:0	1,40,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	272	166	28	20	0.01838235294117647	0.0	A:5:C:0:G:240:T:0:N:0:O:27	A:0:C:0:G:166:T:0:N:0:O:0	5,145,0,127	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	182	28	20	0.02586206896551724	0.0	A:3:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:181:T:1:N:0:O:0	3,65,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	181	28	20	0.02631578947368421	0.0	A:0:C:0:G:3:T:111:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	3,43,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	22240	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	182	28	20	0.021897810218978103	0.0	A:3:C:0:G:134:T:0:N:0:O:0	A:0:C:0:G:182:T:0:N:0:O:0	3,63,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	22375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	87	28	20	0.03305785123966942	0.0	A:115:C:0:G:4:T:0:N:0:O:2	A:87:C:0:G:0:T:0:N:0:O:0	4,59,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	22488	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	92	28	20	0.02531645569620253	0.0	A:76:C:0:G:2:T:0:N:0:O:1	A:92:C:0:G:0:T:0:N:0:O:0	2,45,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	87	28	20	0.021052631578947368	0.0	A:0:C:0:G:2:T:92:N:0:O:1	A:0:C:0:G:0:T:87:N:0:O:0	2,31,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	213	177	28	20	0.018779342723004695	0.0	A:0:C:0:G:4:T:172:N:0:O:37	A:0:C:0:G:0:T:177:N:0:O:0	0,149,4,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23221	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	155	28	20	0.021739130434782608	0.0	A:2:C:0:G:0:T:87:N:0:O:3	A:0:C:0:G:0:T:155:N:0:O:0	2,56,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	155	28	20	0.03773584905660377	0.0	A:51:C:0:G:2:T:0:N:0:O:0	A:155:C:0:G:0:T:0:N:0:O:0	1,27,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23315	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	155	28	20	0.019801980198019802	0.0	A:0:C:97:G:0:T:2:N:0:O:2	A:2:C:153:G:0:T:0:N:0:O:0	0,73,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	125	155	28	20	0.936	1.0	A:0:C:1:G:117:T:0:N:0:O:7	A:0:C:0:G:155:T:0:N:0:O:0	60,68,57,57	209.237	1574.5	yes	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	23543	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	186	28	20	0.019230769230769232	0.0	A:2:C:0:G:97:T:0:N:0:O:5	A:0:C:0:G:184:T:2:N:0:O:0	2,62,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	188	28	20	0.022727272727272728	0.0	A:84:C:0:G:2:T:0:N:0:O:2	A:186:C:0:G:0:T:0:N:0:O:2	2,45,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	184	28	20	0.047619047619047616	0.0	A:4:C:0:G:73:T:0:N:0:O:7	A:0:C:0:G:184:T:0:N:0:O:0	4,40,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	186	28	20	0.024691358024691357	0.0	A:78:C:0:G:2:T:0:N:0:O:1	A:186:C:0:G:0:T:0:N:0:O:0	2,54,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23644	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	186	28	20	0.027522935779816515	0.0	A:0:C:106:G:0:T:3:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	1,78,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23645	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	186	28	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:108:N:0:O:2	A:0:C:0:G:0:T:186:N:0:O:0	1,84,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23656	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	186	28	20	0.02	0.0	A:95:C:0:G:2:T:0:N:0:O:3	A:186:C:0:G:0:T:0:N:0:O:0	2,60,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23674	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	186	28	20	0.028037383177570093	0.0	A:104:C:0:G:3:T:0:N:0:O:0	A:186:C:0:G:0:T:0:N:0:O:0	3,63,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	181	28	20	0.02830188679245283	0.0	A:3:C:0:G:102:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	3,61,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	126	28	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:126:C:0:G:0:T:0:N:0:O:0	2,29,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	126	28	20	0.03773584905660377	0.0	A:0:C:102:G:0:T:4:N:0:O:0	A:0:C:126:G:0:T:0:N:0:O:0	0,87,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	151	126	28	20	0.026490066225165563	0.0	A:147:C:0:G:0:T:4:N:0:O:0	A:126:C:0:G:0:T:0:N:0:O:0	4,79,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	89	126	28	20	0.056179775280898875	0.0	A:5:C:0:G:0:T:84:N:0:O:0	A:0:C:0:G:0:T:126:N:0:O:0	4,31,1,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	126	28	20	0.026785714285714284	0.0	A:109:C:0:G:0:T:3:N:0:O:0	A:126:C:0:G:0:T:0:N:0:O:0	3,45,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	126	28	20	0.04424778761061947	0.0	A:5:C:105:G:1:T:0:N:0:O:2	A:0:C:126:G:0:T:0:N:0:O:0	5,53,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	126	28	20	0.04597701149425287	0.0	A:0:C:83:G:0:T:4:N:0:O:0	A:0:C:126:G:0:T:0:N:0:O:0	0,73,4,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	126	28	20	0.03	0.0	A:0:C:97:G:0:T:3:N:0:O:0	A:0:C:126:G:0:T:0:N:0:O:0	0,71,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	141	28	20	0.09259259259259259	0.0	A:0:C:43:G:0:T:5:N:0:O:6	A:0:C:141:G:0:T:0:N:0:O:0	0,46,5,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	141	28	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:141:T:0:N:0:O:0	2,13,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	141	28	20	0.018691588785046728	0.0	A:2:C:0:G:96:T:0:N:0:O:9	A:0:C:0:G:141:T:0:N:0:O:0	2,23,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24291	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	141	28	20	0.023809523809523808	0.0	A:1:C:0:G:41:T:0:N:0:O:0	A:0:C:0:G:140:T:1:N:0:O:0	0,37,1,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	141	28	20	0.0196078431372549	0.0070921985815602835	A:0:C:0:G:98:T:2:N:0:O:2	A:0:C:0:G:140:T:1:N:0:O:0	0,40,2,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	148	177	28	20	0.033783783783783786	0.005649717514124294	A:5:C:137:G:0:T:2:N:0:O:4	A:1:C:176:G:0:T:0:N:0:O:0	5,88,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	210	178	28	20	0.01904761904761905	0.0	A:190:C:0:G:0:T:4:N:0:O:16	A:177:C:0:G:0:T:0:N:0:O:1	4,134,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	177	28	20	0.03076923076923077	0.005649717514124294	A:63:C:0:G:2:T:0:N:0:O:0	A:176:C:0:G:1:T:0:N:0:O:0	0,4,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	191	28	20	0.020618556701030927	0.0	A:94:C:0:G:2:T:0:N:0:O:1	A:191:C:0:G:0:T:0:N:0:O:0	2,33,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	24982	T	C	N	1	near depth threshold	Alarm	False	False	False	31	191	28	20	0.0967741935483871	0.0	A:0:C:3:G:0:T:28:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	3,23,0,8	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	25105	A	G	A	1	near depth threshold	Alarm	False	False	True	32	182	28	20	0.03125	0.005494505494505495	A:31:C:0:G:1:T:0:N:0:O:0	A:181:C:0:G:1:T:0:N:0:O:0	0,4,1,28	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	183	28	20	0.031746031746031744	0.0	A:2:C:0:G:61:T:0:N:0:O:0	A:0:C:0:G:182:T:1:N:0:O:0	1,15,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	183	28	20	0.019801980198019802	0.0	A:94:C:0:G:2:T:1:N:0:O:4	A:183:C:0:G:0:T:0:N:0:O:0	2,53,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	183	28	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	2,49,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	183	28	20	0.02040816326530612	0.0	A:0:C:0:G:2:T:96:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,55,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	183	28	20	0.0297029702970297	0.0	A:98:C:3:G:0:T:0:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	3,60,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	183	28	20	0.020202020202020204	0.0	A:93:C:0:G:2:T:1:N:0:O:3	A:183:C:0:G:0:T:0:N:0:O:0	2,60,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25418	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	155	28	20	0.022727272727272728	0.0	A:0:C:85:G:0:T:2:N:0:O:1	A:0:C:155:G:0:T:0:N:0:O:0	2,20,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	140	155	28	20	0.9642857142857143	0.9935483870967742	A:0:C:1:G:3:T:135:N:0:O:1	A:0:C:1:G:0:T:154:N:0:O:0	62,63,73,77	280.0	2306.3	yes	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	155	28	20	0.03076923076923077	0.0	A:4:C:118:G:0:T:0:N:0:O:8	A:0:C:155:G:0:T:0:N:0:O:0	4,71,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25699	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	182	28	20	0.0196078431372549	0.0	A:2:C:0:G:87:T:0:N:0:O:13	A:0:C:0:G:181:T:0:N:0:O:1	2,59,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	55	181	28	20	0.03636363636363636	0.0	A:1:C:2:G:52:T:0:N:0:O:0	A:0:C:0:G:180:T:1:N:0:O:0	2,12,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	181	28	20	0.021052631578947368	0.0	A:0:C:88:G:0:T:2:N:0:O:5	A:0:C:181:G:0:T:0:N:0:O:0	2,55,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	184	28	20	0.02	0.005434782608695652	A:2:C:65:G:0:T:0:N:0:O:33	A:1:C:180:G:0:T:0:N:0:O:3	2,42,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	182	28	20	0.06818181818181818	0.0	A:40:C:3:G:0:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:1	0,30,3,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	181	28	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:0:C:181:G:0:T:0:N:0:O:0	0,77,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	181	28	20	0.022727272727272728	0.0	A:83:C:0:G:2:T:0:N:0:O:3	A:181:C:0:G:0:T:0:N:0:O:0	2,42,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	181	28	20	0.028169014084507043	0.0	A:68:C:0:G:2:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	2,24,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	181	28	20	0.019230769230769232	0.0	A:49:C:0:G:1:T:0:N:0:O:2	A:181:C:0:G:0:T:0:N:0:O:0	1,13,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	181	28	20	0.034482758620689655	0.0	A:0:C:82:G:0:T:3:N:0:O:2	A:0:C:181:G:0:T:0:N:0:O:0	2,57,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	25891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	181	28	20	0.024390243902439025	0.0	A:79:C:0:G:2:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	2,41,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	181	28	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	2,45,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	181	28	20	0.05333333333333334	0.0	A:4:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	4,31,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25924	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	181	28	20	0.02702702702702703	0.0	A:0:C:71:G:0:T:2:N:0:O:1	A:1:C:180:G:0:T:0:N:0:O:0	2,27,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	345	28	20	0.021739130434782608	0.002898550724637681	A:179:C:0:G:4:T:0:N:0:O:1	A:344:C:0:G:1:T:0:N:0:O:0	0,149,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	25971	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	183	28	20	0.02702702702702703	0.0	A:3:C:0:G:108:T:0:N:0:O:0	A:0:C:0:G:182:T:1:N:0:O:0	3,57,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26144	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	327	28	20	0.031007751937984496	0.0	A:0:C:0:G:123:T:4:N:0:O:2	A:0:C:0:G:327:T:0:N:0:O:0	3,74,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	26260	T	C	T	16	ignore low frequency variant	Pass	False	False	True	157	352	28	20	0.03184713375796178	0.0	A:0:C:5:G:0:T:145:N:0:O:7	A:0:C:0:G:0:T:352:N:0:O:0	5,100,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26309	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	177	28	20	0.03125	0.005649717514124294	A:0:C:90:G:0:T:3:N:0:O:3	A:0:C:175:G:0:T:1:N:0:O:1	1,72,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26314	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	176	28	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:176:T:0:N:0:O:0	2,61,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	26345	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	176	28	20	0.023529411764705882	0.0	A:0:C:2:G:0:T:82:N:0:O:1	A:0:C:0:G:0:T:176:N:0:O:0	1,51,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	342	28	20	0.045454545454545456	0.0	A:0:C:168:G:0:T:8:N:0:O:0	A:3:C:339:G:0:T:0:N:0:O:0	0,138,8,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	222	343	28	20	0.02702702702702703	0.0	A:0:C:6:G:0:T:215:N:0:O:1	A:0:C:0:G:0:T:343:N:0:O:0	0,152,6,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	172	28	20	0.03125	0.0	A:91:C:0:G:0:T:3:N:0:O:2	A:172:C:0:G:0:T:0:N:0:O:0	3,14,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	172	28	20	0.03409090909090909	0.0	A:3:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	3,7,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	26713	G	T	G	16	ignore low frequency variant	Pass	False	False	True	159	172	28	20	0.018867924528301886	0.0	A:0:C:0:G:134:T:3:N:0:O:22	A:0:C:0:G:172:T:0:N:0:O:0	3,76,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	172	28	20	0.022222222222222223	0.0	A:76:C:0:G:2:T:0:N:0:O:12	A:172:C:0:G:0:T:0:N:0:O:0	2,35,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27095	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	172	28	20	0.020618556701030927	0.0	A:94:C:2:G:0:T:0:N:0:O:1	A:172:C:0:G:0:T:0:N:0:O:0	2,35,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	172	28	20	0.05128205128205128	0.0	A:0:C:73:G:0:T:4:N:0:O:1	A:0:C:172:G:0:T:0:N:0:O:0	0,58,4,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	160	28	20	0.031914893617021274	0.0	A:3:C:0:G:88:T:0:N:0:O:3	A:0:C:0:G:160:T:0:N:0:O:0	3,39,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27540	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	33	28	20	0.028846153846153848	0.0	A:101:C:0:G:3:T:0:N:0:O:0	A:33:C:0:G:0:T:0:N:0:O:0	3,54,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27673	C	T	C	10	mixed variant with conflicting illumina support	Check	False	False	True	122	51	28	20	0.45901639344262296	1.0	A:1:C:61:G:0:T:56:N:0:O:4	A:0:C:0:G:0:T:51:N:0:O:0	34,72,22,50	.	.	yes	.	.	mismatch(s)	mixed position	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	38	28	20	0.028169014084507043	0.0	A:2:C:0:G:66:T:0:N:0:O:3	A:0:C:0:G:38:T:0:N:0:O:0	2,15,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	180	28	20	0.03418803418803419	0.0	A:4:C:0:G:111:T:0:N:0:O:2	A:0:C:0:G:176:T:4:N:0:O:0	4,29,0,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	180	28	20	0.03508771929824561	0.0	A:110:C:0:G:4:T:0:N:0:O:0	A:180:C:0:G:0:T:0:N:0:O:0	4,30,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	27989	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	180	28	20	0.025423728813559324	0.0	A:114:C:0:G:3:T:0:N:0:O:1	A:180:C:0:G:0:T:0:N:0:O:0	3,47,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28492	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	155	28	20	0.022222222222222223	0.0	A:87:C:2:G:0:T:0:N:0:O:1	A:155:C:0:G:0:T:0:N:0:O:0	0,63,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28673	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	155	28	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:155:T:0:N:0:O:0	2,47,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	155	28	20	0.020833333333333332	0.0	A:92:C:0:G:2:T:0:N:0:O:2	A:155:C:0:G:0:T:0:N:0:O:0	2,37,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	160	28	20	0.043478260869565216	0.0	A:0:C:63:G:0:T:3:N:0:O:3	A:0:C:160:G:0:T:0:N:0:O:0	0,22,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	160	28	20	0.08571428571428572	0.0	A:0:C:32:G:0:T:3:N:0:O:0	A:0:C:160:G:0:T:0:N:0:O:0	0,16,3,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	160	28	20	0.02127659574468085	0.0	A:0:C:1:G:0:T:46:N:0:O:0	A:1:C:0:G:0:T:159:N:0:O:0	0,17,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	160	28	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:160:T:0:N:0:O:0	2,4,0,96	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	160	28	20	0.03389830508474576	0.0	A:0:C:56:G:0:T:2:N:0:O:1	A:0:C:160:G:0:T:0:N:0:O:0	0,12,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	29314	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	162	28	20	0.021897810218978103	0.0	A:134:C:0:G:3:T:0:N:0:O:0	A:162:C:0:G:0:T:0:N:0:O:0	1,48,2,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	45	28	20	0.02247191011235955	0.0	A:2:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:45:T:0:N:0:O:0	2,13,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	79	31	28	20	0.05063291139240506	0.0	A:0:C:4:G:71:T:0:N:0:O:4	A:0:C:0:G:30:T:1:N:0:O:0	4,34,0,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00039	artic-pipeline	NB05	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	362	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00039	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	143	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	39	191	28	20	0.02564102564102564	0.0	A:1:C:0:G:0:T:35:N:0:O:3	A:0:C:0:G:0:T:191:N:0:O:0	0,20,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	37	191	28	20	0.02702702702702703	0.0	A:36:C:0:G:0:T:1:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	0,18,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	29	191	28	20	0.034482758620689655	0.0	A:0:C:28:G:0:T:1:N:0:O:0	A:0:C:191:G:0:T:0:N:0:O:0	0,18,1,11	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	148	T	C	T	1	near depth threshold	Alarm	False	False	True	26	200	28	20	0.038461538461538464	0.0	A:0:C:1:G:0:T:25:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	0,13,1,13	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	168	T	A	T	1	near depth threshold	Alarm	False	False	True	33	200	28	20	0.030303030303030304	0.0	A:1:C:0:G:0:T:31:N:0:O:1	A:0:C:0:G:0:T:200:N:0:O:0	0,15,1,18	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	178	A	T	A	1	near depth threshold	Alarm	False	False	True	29	200	28	20	0.034482758620689655	0.0	A:27:C:0:G:0:T:1:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	0,17,1,12	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	179	T	A	T	1	near depth threshold	Alarm	False	False	True	28	200	28	20	0.03571428571428571	0.0	A:1:C:0:G:0:T:26:N:0:O:1	A:0:C:0:G:0:T:200:N:0:O:0	0,18,1,10	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	180	C	T	C	1	near depth threshold	Alarm	False	False	True	22	200	28	20	0.045454545454545456	0.0	A:0:C:20:G:0:T:1:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,18,1,4	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	218	C	G	C	1	near depth threshold	Alarm	False	False	True	25	193	28	20	0.04	0.0	A:0:C:24:G:1:T:0:N:0:O:0	A:1:C:191:G:0:T:1:N:0:O:0	0,15,1,10	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	237	G	T	G	1	near depth threshold	Alarm	False	False	True	32	191	28	20	0.03125	0.0	A:0:C:0:G:31:T:1:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	1,17,0,15	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	31	191	28	20	0.8387096774193549	1.0	A:0:C:0:G:0:T:26:N:0:O:5	A:0:C:0:G:0:T:191:N:0:O:0	12,17,14,14	70.0	1324.8	yes	depth near threshold	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	291	A	G	A	1	near depth threshold	Alarm	False	False	True	24	191	28	20	0.041666666666666664	0.0	A:22:C:0:G:1:T:0:N:0:O:1	A:191:C:0:G:0:T:0:N:0:O:0	1,14,0,10	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	314	A	G	A	1	near depth threshold	Alarm	False	False	True	24	191	28	20	0.041666666666666664	0.0	A:23:C:0:G:1:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	1,12,0,12	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	184	28	20	0.0196078431372549	0.0	A:0:C:2:G:0:T:97:N:0:O:3	A:0:C:0:G:0:T:184:N:0:O:0	2,22,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	473	T	C	T	16	ignore low frequency variant	Pass	False	False	True	148	191	28	20	0.02027027027027027	0.0	A:0:C:3:G:0:T:145:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,58,3,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	189	28	20	0.02586206896551724	0.0	A:0:C:3:G:0:T:112:N:0:O:1	A:0:C:0:G:0:T:189:N:0:O:0	0,51,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	200	28	20	0.020833333333333332	0.0	A:2:C:0:G:91:T:0:N:0:O:3	A:0:C:0:G:200:T:0:N:0:O:0	1,41,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	945	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	159	28	20	0.02	0.0	A:0:C:0:G:98:T:2:N:0:O:0	A:0:C:0:G:159:T:0:N:0:O:0	0,38,2,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	170	197	28	20	0.9823529411764705	1.0	A:0:C:3:G:0:T:167:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	120,123,47,47	210.0	2098.7	yes	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	197	28	20	0.024193548387096774	0.0	A:0:C:120:G:0:T:3:N:0:O:1	A:3:C:194:G:0:T:0:N:0:O:0	3,90,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	197	28	20	0.03896103896103896	0.0	A:3:C:0:G:55:T:0:N:0:O:19	A:0:C:0:G:196:T:1:N:0:O:0	2,12,1,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	197	28	20	0.021505376344086023	0.0	A:2:C:0:G:81:T:0:N:0:O:10	A:0:C:0:G:196:T:1:N:0:O:0	2,44,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	197	28	20	0.036585365853658534	0.005076142131979695	A:3:C:1:G:78:T:0:N:0:O:0	A:1:C:0:G:196:T:0:N:0:O:0	3,35,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1337	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	31	28	20	0.03333333333333333	0.0	A:3:C:0:G:84:T:0:N:0:O:3	A:0:C:0:G:31:T:0:N:0:O:0	3,42,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1339	T	A	T	16	ignore low frequency variant	Pass	False	False	True	113	31	28	20	0.02654867256637168	0.0	A:3:C:0:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:31:N:0:O:0	3,53,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	122	54	28	20	0.03278688524590164	0.0	A:118:C:0:G:0:T:4:N:0:O:0	A:54:C:0:G:0:T:0:N:0:O:0	4,59,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	123	56	28	20	0.032520325203252036	0.0	A:0:C:119:G:4:T:0:N:0:O:0	A:0:C:56:G:0:T:0:N:0:O:0	4,62,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	62	28	20	0.054945054945054944	0.0	A:0:C:83:G:0:T:5:N:0:O:3	A:0:C:62:G:0:T:0:N:0:O:0	0,61,5,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	60	28	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:60:N:0:O:0	0,67,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	85	36	28	20	0.023529411764705882	0.0	A:0:C:80:G:2:T:0:N:0:O:3	A:0:C:36:G:0:T:0:N:0:O:0	2,36,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	185	28	20	0.029411764705882353	0.0	A:4:C:99:G:0:T:0:N:0:O:33	A:0:C:185:G:0:T:0:N:0:O:0	1,65,3,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	185	28	20	0.024390243902439025	0.0	A:0:C:3:G:0:T:115:N:0:O:5	A:0:C:0:G:0:T:185:N:0:O:0	0,57,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	185	28	20	0.02531645569620253	0.005405405405405406	A:76:C:0:G:2:T:0:N:0:O:1	A:184:C:0:G:1:T:0:N:0:O:0	1,8,1,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1862	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	185	28	20	0.0196078431372549	0.0	A:0:C:94:G:0:T:2:N:0:O:6	A:0:C:185:G:0:T:0:N:0:O:0	0,76,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	171	28	20	0.0736196319018405	0.0	A:12:C:0:G:151:T:0:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	12,64,0,99	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	69	28	20	0.037037037037037035	0.0	A:3:C:0:G:74:T:0:N:0:O:4	A:0:C:0:G:69:T:0:N:0:O:0	0,27,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	191	189	28	20	0.031413612565445025	0.0	A:185:C:0:G:6:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	6,75,0,116	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	189	28	20	0.02877697841726619	0.0	A:0:C:129:G:0:T:4:N:0:O:6	A:0:C:189:G:0:T:0:N:0:O:0	0,106,4,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	189	28	20	0.0364963503649635	0.0	A:0:C:132:G:0:T:5:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,122,5,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	115	47	28	20	0.591304347826087	1.0	A:0:C:3:G:0:T:68:N:0:O:44	A:0:C:0:G:0:T:47:N:0:O:0	31,76,37,39	251.68	1315.1	yes	.	.	.	mixed position	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	38	28	20	0.023529411764705882	0.0	A:0:C:0:G:72:T:2:N:0:O:11	A:0:C:0:G:38:T:0:N:0:O:0	0,60,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	3210	A	T	A	16	ignore low frequency variant	Pass	False	False	True	127	189	28	20	0.023622047244094488	0.0	A:124:C:0:G:0:T:3:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	3,45,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	190	28	20	0.022222222222222223	0.0	A:125:C:0:G:3:T:0:N:0:O:7	A:190:C:0:G:0:T:0:N:0:O:0	3,42,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	190	28	20	0.030927835051546393	0.0	A:0:C:93:G:0:T:3:N:0:O:1	A:0:C:190:G:0:T:0:N:0:O:0	0,45,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	189	28	20	0.031578947368421054	0.0	A:0:C:91:G:0:T:3:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	0,55,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	52	189	28	20	0.038461538461538464	0.0	A:49:C:1:G:0:T:2:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	1,26,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	3414	A	T	A	16	ignore low frequency variant	Pass	False	False	True	59	189	28	20	0.03389830508474576	0.0	A:57:C:0:G:0:T:2:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,26,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	167	28	20	0.02631578947368421	0.0	A:0:C:74:G:0:T:2:N:0:O:0	A:0:C:167:G:0:T:0:N:0:O:0	0,61,2,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	3876	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	170	28	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	2,51,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	193	304	28	20	0.02072538860103627	0.0	A:4:C:0:G:183:T:0:N:0:O:6	A:0:C:0:G:303:T:1:N:0:O:0	4,47,0,146	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	134	28	20	0.04081632653061224	0.0	A:0:C:47:G:0:T:2:N:0:O:0	A:1:C:133:G:0:T:0:N:0:O:0	0,36,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	134	28	20	0.017391304347826087	0.007462686567164179	A:2:C:0:G:0:T:91:N:0:O:22	A:1:C:0:G:0:T:133:N:0:O:0	0,47,2,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	134	28	20	0.021052631578947368	0.0	A:93:C:0:G:0:T:2:N:0:O:0	A:134:C:0:G:0:T:0:N:0:O:0	0,31,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	170	255	28	20	0.03529411764705882	0.00392156862745098	A:0:C:0:G:154:T:6:N:0:O:10	A:0:C:0:G:254:T:1:N:0:O:0	0,124,6,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	197	284	28	20	0.02030456852791878	0.0	A:4:C:0:G:191:T:0:N:0:O:2	A:0:C:0:G:283:T:0:N:0:O:1	1,99,3,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	285	28	20	0.021052631578947368	0.0	A:0:C:170:G:0:T:4:N:0:O:16	A:1:C:284:G:0:T:0:N:0:O:0	0,106,4,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	117	28	20	0.046511627906976744	0.0	A:0:C:82:G:0:T:4:N:0:O:0	A:0:C:117:G:0:T:0:N:0:O:0	1,60,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	117	28	20	0.022222222222222223	0.0	A:0:C:84:G:0:T:2:N:0:O:4	A:0:C:117:G:0:T:0:N:0:O:0	0,71,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	4984	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	113	28	20	0.03125	0.0	A:155:C:0:G:5:T:0:N:0:O:0	A:113:C:0:G:0:T:0:N:0:O:0	5,61,0,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	36	28	20	0.0392156862745098	0.0	A:47:C:2:G:0:T:0:N:0:O:2	A:36:C:0:G:0:T:0:N:0:O:0	1,30,1,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5260	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	32	28	20	0.020833333333333332	0.0	A:0:C:1:G:0:T:42:N:0:O:5	A:0:C:0:G:0:T:32:N:0:O:0	0,34,1,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5265	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	32	28	20	0.022988505747126436	0.0	A:0:C:0:G:2:T:85:N:0:O:0	A:0:C:0:G:0:T:32:N:0:O:0	2,44,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	32	28	20	0.24193548387096775	0.0	A:46:C:0:G:15:T:0:N:0:O:1	A:32:C:0:G:0:T:0:N:0:O:0	7,27,8,35	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5284	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	32	28	20	0.13924050632911392	0.0	A:0:C:68:G:0:T:11:N:0:O:0	A:0:C:32:G:0:T:0:N:0:O:0	8,47,3,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	5338	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	35	28	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:92:N:0:O:3	A:0:C:0:G:0:T:35:N:0:O:0	0,52,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	34	28	20	0.03571428571428571	0.0	A:3:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:34:T:0:N:0:O:0	3,37,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	208	28	20	0.02040816326530612	0.0	A:0:C:186:G:0:T:4:N:0:O:6	A:0:C:208:G:0:T:0:N:0:O:0	0,124,4,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	239	28	20	0.08450704225352113	0.0	A:0:C:65:G:0:T:6:N:0:O:0	A:1:C:238:G:0:T:0:N:0:O:0	0,56,6,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	239	28	20	0.03125	0.0	A:0:C:4:G:0:T:119:N:0:O:5	A:0:C:0:G:0:T:239:N:0:O:0	0,72,4,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	239	28	20	0.04597701149425287	0.0	A:0:C:4:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:239:N:0:O:0	0,57,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	180	28	20	0.024390243902439025	0.0	A:3:C:0:G:100:T:0:N:0:O:20	A:0:C:0:G:180:T:0:N:0:O:0	0,35,3,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	85	28	20	0.023529411764705882	0.0	A:2:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:85:T:0:N:0:O:0	2,15,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	85	28	20	0.03296703296703297	0.0	A:0:C:88:G:0:T:3:N:0:O:0	A:0:C:85:G:0:T:0:N:0:O:0	1,37,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	141	28	20	0.10526315789473684	0.0	A:0:C:66:G:0:T:8:N:0:O:2	A:0:C:141:G:0:T:0:N:0:O:0	0,51,8,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	132	28	20	0.019417475728155338	0.0	A:0:C:2:G:0:T:88:N:0:O:13	A:0:C:0:G:0:T:132:N:0:O:0	1,46,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	132	28	20	0.030612244897959183	0.0	A:0:C:95:G:0:T:3:N:0:O:0	A:1:C:131:G:0:T:0:N:0:O:0	1,49,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	6195	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	86	28	20	0.020202020202020204	0.011627906976744186	A:0:C:91:G:0:T:2:N:0:O:6	A:0:C:85:G:0:T:1:N:0:O:0	2,55,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	54	28	20	0.028037383177570093	0.05555555555555555	A:0:C:104:G:0:T:3:N:0:O:0	A:0:C:51:G:0:T:3:N:0:O:0	0,66,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	78	28	20	0.023255813953488372	0.0	A:0:C:2:G:0:T:84:N:0:O:0	A:0:C:0:G:0:T:78:N:0:O:0	0,61,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	26	28	20	0.03125	0.0	A:59:C:0:G:2:T:0:N:0:O:3	A:26:C:0:G:0:T:0:N:0:O:0	2,26,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	38	28	20	0.022727272727272728	0.0	A:0:C:85:G:0:T:2:N:0:O:1	A:0:C:38:G:0:T:0:N:0:O:0	0,76,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6725	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	38	28	20	0.023255813953488372	0.0	A:84:C:0:G:0:T:2:N:0:O:0	A:37:C:0:G:1:T:0:N:0:O:0	2,61,0,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	28	28	20	0.056074766355140186	0.0	A:96:C:0:G:6:T:1:N:0:O:4	A:28:C:0:G:0:T:0:N:0:O:0	6,48,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	28	28	20	0.034482758620689655	0.0	A:0:C:98:G:0:T:4:N:0:O:14	A:0:C:28:G:0:T:0:N:0:O:0	0,77,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6793	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	27	28	20	0.023255813953488372	0.037037037037037035	A:0:C:0:G:126:T:3:N:0:O:0	A:0:C:0:G:26:T:1:N:0:O:0	2,72,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6797	C	G	C	16	ignore low frequency variant	Pass	False	False	True	124	28	28	20	0.024193548387096774	0.0	A:0:C:118:G:3:T:0:N:0:O:3	A:0:C:28:G:0:T:0:N:0:O:0	1,71,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6834	T	A	T	16	ignore low frequency variant	Pass	False	False	True	106	29	28	20	0.02830188679245283	0.0	A:3:C:0:G:0:T:102:N:0:O:1	A:0:C:0:G:0:T:29:N:0:O:0	2,34,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6864	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	14	28	20	0.02564102564102564	0.0	A:38:C:0:G:1:T:0:N:0:O:0	A:14:C:0:G:0:T:0:N:0:O:0	0,3,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	14	28	20	0.02631578947368421	0.0	A:1:C:0:G:37:T:0:N:0:O:0	A:0:C:0:G:14:T:0:N:0:O:0	1,11,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6888	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	14	28	20	0.02127659574468085	0.0	A:46:C:0:G:1:T:0:N:0:O:0	A:14:C:0:G:0:T:0:N:0:O:0	1,15,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	6893	T	G	T	16	ignore low frequency variant	Pass	False	False	True	45	14	28	20	0.022222222222222223	0.0	A:0:C:0:G:1:T:44:N:0:O:0	A:0:C:0:G:0:T:14:N:0:O:0	0,16,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	7031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	12	28	20	0.02631578947368421	0.0	A:37:C:0:G:1:T:0:N:0:O:0	A:12:C:0:G:0:T:0:N:0:O:0	0,20,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	7032	A	T	A	1	near depth threshold	Alarm	False	False	True	33	12	28	20	0.06060606060606061	0.0	A:31:C:0:G:0:T:2:N:0:O:0	A:12:C:0:G:0:T:0:N:0:O:0	0,21,2,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	7045	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	12	28	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:44:N:0:O:0	A:0:C:0:G:0:T:12:N:0:O:0	0,23,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	7052	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	12	28	20	0.02127659574468085	0.0	A:0:C:1:G:0:T:46:N:0:O:0	A:0:C:0:G:0:T:12:N:0:O:0	0,22,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	7103	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	88	28	20	0.025423728813559324	0.0	A:113:C:0:G:3:T:0:N:0:O:2	A:88:C:0:G:0:T:0:N:0:O:0	3,44,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	156	28	20	0.047619047619047616	0.0	A:4:C:0:G:79:T:0:N:0:O:1	A:0:C:0:G:156:T:0:N:0:O:0	4,24,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	7487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	156	28	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:156:C:0:G:0:T:0:N:0:O:0	2,37,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	30	28	20	0.03614457831325301	0.0	A:80:C:0:G:3:T:0:N:0:O:0	A:30:C:0:G:0:T:0:N:0:O:0	3,16,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	80	28	20	0.04081632653061224	0.0	A:93:C:4:G:0:T:0:N:0:O:1	A:80:C:0:G:0:T:0:N:0:O:0	0,53,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	79	28	20	0.023809523809523808	0.0	A:0:C:0:G:117:T:3:N:0:O:6	A:0:C:0:G:79:T:0:N:0:O:0	2,55,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	49	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:49:N:0:O:0	0,58,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	21	28	20	0.02564102564102564	0.0	A:38:C:0:G:1:T:0:N:0:O:0	A:21:C:0:G:0:T:0:N:0:O:0	1,21,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	51	19	28	20	0.0196078431372549	0.0	A:1:C:0:G:0:T:48:N:0:O:2	A:0:C:0:G:0:T:19:N:0:O:0	1,28,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8547	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	19	28	20	0.02127659574468085	0.0	A:44:C:0:G:1:T:0:N:0:O:2	A:19:C:0:G:0:T:0:N:0:O:0	1,27,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8584	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	17	28	20	0.029411764705882353	0.0	A:66:C:0:G:2:T:0:N:0:O:0	A:17:C:0:G:0:T:0:N:0:O:0	2,41,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	17	28	20	0.04411764705882353	0.0	A:0:C:3:G:0:T:65:N:0:O:0	A:0:C:0:G:0:T:17:N:0:O:0	0,46,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8609	T	G	T	1	near depth threshold	Alarm	False	False	True	32	17	28	20	0.03125	0.0	A:0:C:0:G:1:T:31:N:0:O:0	A:0:C:0:G:0:T:17:N:0:O:0	1,25,0,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	22	28	20	0.034482758620689655	0.0	A:2:C:0:G:56:T:0:N:0:O:0	A:0:C:0:G:22:T:0:N:0:O:0	2,3,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	139	179	28	20	0.02158273381294964	0.0	A:3:C:1:G:0:T:135:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,54,3,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	171	180	28	20	0.03508771929824561	0.0	A:6:C:0:G:0:T:159:N:0:O:6	A:0:C:0:G:0:T:180:N:0:O:0	5,56,1,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	166	180	28	20	0.030120481927710843	0.0	A:5:C:0:G:160:T:0:N:0:O:1	A:0:C:0:G:180:T:0:N:0:O:0	5,50,0,116	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	203	180	28	20	0.03940886699507389	0.0	A:0:C:8:G:1:T:191:N:0:O:3	A:0:C:0:G:0:T:180:N:0:O:0	3,86,5,117	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	196	180	28	20	0.025510204081632654	0.0	A:0:C:0:G:5:T:189:N:0:O:2	A:0:C:0:G:0:T:180:N:0:O:0	0,84,5,112	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	27	28	20	0.043010752688172046	0.0	A:0:C:87:G:0:T:4:N:0:O:2	A:0:C:27:G:0:T:0:N:0:O:0	0,51,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	9388	G	T	N	2	allele in negative control	Alarm	False	False	False	121	27	28	20	0.024793388429752067	0.0	A:0:C:0:G:118:T:3:N:0:O:0	A:0:C:0:G:27:T:0:N:0:O:0	0,57,3,64	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9479	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	25	28	20	0.023809523809523808	0.0	A:0:C:0:G:81:T:2:N:0:O:1	A:0:C:0:G:25:T:0:N:0:O:0	0,29,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	64	28	20	0.029411764705882353	0.0	A:0:C:129:G:0:T:4:N:0:O:3	A:0:C:64:G:0:T:0:N:0:O:0	0,111,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9561	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	57	28	20	0.020202020202020204	0.0	A:0:C:95:G:0:T:2:N:0:O:2	A:0:C:57:G:0:T:0:N:0:O:0	0,56,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	67	28	20	0.027777777777777776	0.0	A:0:C:1:G:0:T:35:N:0:O:0	A:0:C:0:G:0:T:67:N:0:O:0	1,35,0,1	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9796	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	52	28	20	0.03333333333333333	0.0	A:57:C:0:G:2:T:0:N:0:O:1	A:52:C:0:G:0:T:0:N:0:O:0	0,45,2,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	174	28	20	0.025974025974025976	0.0	A:2:C:0:G:75:T:0:N:0:O:0	A:0:C:0:G:174:T:0:N:0:O:0	2,15,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	174	28	20	0.021052631578947368	0.0	A:0:C:85:G:0:T:2:N:0:O:8	A:0:C:174:G:0:T:0:N:0:O:0	2,27,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	123	28	20	0.024691358024691357	0.0	A:2:C:0:G:77:T:0:N:0:O:2	A:0:C:0:G:123:T:0:N:0:O:0	1,21,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	139	28	20	0.04081632653061224	0.0	A:91:C:1:G:4:T:0:N:0:O:2	A:139:C:0:G:0:T:0:N:0:O:0	4,31,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	189	28	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:189:G:0:T:0:N:0:O:0	0,51,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	10948	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	181	28	20	0.1206896551724138	0.0	A:101:C:0:G:14:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	5,48,9,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	199	28	20	0.02	0.0	A:0:C:0:G:2:T:98:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,62,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11339	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	206	28	20	0.022222222222222223	0.0	A:0:C:172:G:0:T:4:N:0:O:4	A:0:C:206:G:0:T:0:N:0:O:0	0,99,4,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	49	28	20	0.020833333333333332	0.0	A:0:C:90:G:0:T:2:N:0:O:4	A:0:C:49:G:0:T:0:N:0:O:0	0,56,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	17	28	20	0.03125	0.0	A:0:C:62:G:0:T:2:N:0:O:0	A:0:C:17:G:0:T:0:N:0:O:0	0,47,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	20	28	20	0.025	0.0	A:78:C:0:G:0:T:2:N:0:O:0	A:20:C:0:G:0:T:0:N:0:O:0	2,34,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11800	G	T	G	16	ignore low frequency variant	Pass	False	False	True	79	20	28	20	0.02531645569620253	0.0	A:1:C:0:G:75:T:2:N:0:O:1	A:0:C:0:G:20:T:0:N:0:O:0	2,50,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	193	227	28	20	0.03626943005181347	0.00881057268722467	A:0:C:0:G:124:T:7:N:0:O:62	A:0:C:1:G:222:T:2:N:0:O:2	0,64,7,129	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	223	28	20	0.07575757575757576	0.0	A:60:C:0:G:5:T:1:N:0:O:0	A:223:C:0:G:0:T:0:N:0:O:0	0,47,5,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	191	28	20	0.020202020202020204	0.0	A:2:C:0:G:81:T:0:N:0:O:16	A:0:C:0:G:188:T:3:N:0:O:0	0,76,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	12339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	191	28	20	0.026785714285714284	0.0	A:0:C:3:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,63,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	163	28	20	0.052083333333333336	0.0	A:5:C:0:G:86:T:0:N:0:O:5	A:0:C:0:G:162:T:1:N:0:O:0	5,30,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	169	28	20	0.07692307692307693	0.0	A:0:C:60:G:0:T:5:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,40,5,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	12730	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	169	28	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:90:N:0:O:0	A:0:C:0:G:0:T:169:N:0:O:0	0,41,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	174	28	20	0.025	0.0	A:0:C:77:G:0:T:2:N:0:O:1	A:0:C:174:G:0:T:0:N:0:O:0	1,30,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	12938	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	174	28	20	0.02127659574468085	0.0	A:2:C:0:G:90:T:0:N:0:O:2	A:0:C:0:G:174:T:0:N:0:O:0	2,32,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	174	28	20	0.024691358024691357	0.0	A:0:C:79:G:0:T:2:N:0:O:0	A:0:C:174:G:0:T:0:N:0:O:0	0,56,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	269	168	28	20	0.02973977695167286	0.0	A:8:C:0:G:0:T:230:N:0:O:31	A:0:C:0:G:0:T:168:N:0:O:0	8,151,0,118	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	32	28	20	0.019801980198019802	0.0	A:2:C:0:G:97:T:0:N:0:O:2	A:0:C:0:G:32:T:0:N:0:O:0	2,43,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	37	28	20	0.02040816326530612	0.0	A:2:C:0:G:95:T:1:N:0:O:0	A:0:C:0:G:37:T:0:N:0:O:0	2,36,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	37	28	20	0.08571428571428572	0.0	A:0:C:63:G:0:T:6:N:0:O:1	A:0:C:37:G:0:T:0:N:0:O:0	0,63,6,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	37	28	20	0.037037037037037035	0.0	A:3:C:0:G:74:T:0:N:0:O:4	A:0:C:0:G:37:T:0:N:0:O:0	3,28,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	35	28	20	0.025	0.0	A:0:C:0:G:2:T:78:N:0:O:0	A:0:C:0:G:0:T:35:N:0:O:0	0,38,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	33	28	20	0.03636363636363636	0.0	A:0:C:53:G:0:T:2:N:0:O:0	A:0:C:33:G:0:T:0:N:0:O:0	1,35,1,20	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	33	28	20	0.02666666666666667	0.0	A:0:C:71:G:0:T:2:N:0:O:2	A:0:C:33:G:0:T:0:N:0:O:0	2,42,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	30	28	20	0.023529411764705882	0.0	A:2:C:77:G:0:T:0:N:0:O:6	A:0:C:30:G:0:T:0:N:0:O:0	2,37,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	175	28	20	0.02631578947368421	0.0	A:3:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	3,30,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	88	101	28	20	0.9659090909090909	1.0	A:0:C:3:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:101:N:0:O:0	56,58,29,30	255.158	1424.5	yes	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	182	28	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:182:G:0:T:0:N:0:O:0	0,61,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	30	28	20	0.0273972602739726	0.0	A:71:C:0:G:2:T:0:N:0:O:0	A:30:C:0:G:0:T:0:N:0:O:0	2,43,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	30	28	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:30:T:0:N:0:O:0	2,43,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	14977	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	35	28	20	0.02	0.0	A:97:C:0:G:2:T:0:N:0:O:1	A:35:C:0:G:0:T:0:N:0:O:0	2,63,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	15050	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	40	28	20	0.020202020202020204	0.0	A:0:C:95:G:0:T:2:N:0:O:2	A:0:C:40:G:0:T:0:N:0:O:0	1,59,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	40	28	20	0.036585365853658534	0.0	A:3:C:0:G:78:T:0:N:0:O:1	A:0:C:0:G:40:T:0:N:0:O:0	3,31,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	15111	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	33	28	20	0.019417475728155338	0.0	A:98:C:0:G:2:T:0:N:0:O:3	A:33:C:0:G:0:T:0:N:0:O:0	2,52,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	15715	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	243	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:86:N:0:O:1	A:0:C:0:G:0:T:243:N:0:O:0	0,62,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	185	28	20	0.1	0.0	A:0:C:43:G:0:T:5:N:0:O:2	A:0:C:185:G:0:T:0:N:0:O:0	0,21,5,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	186	28	20	0.02608695652173913	0.0	A:0:C:111:G:0:T:3:N:0:O:1	A:0:C:186:G:0:T:0:N:0:O:0	0,73,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	16148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	252	188	28	20	0.047619047619047616	0.005319148936170213	A:240:C:0:G:12:T:0:N:0:O:0	A:187:C:0:G:1:T:0:N:0:O:0	7,134,5,118	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16150	T	C	T	16	ignore low frequency variant	Pass	False	False	True	244	188	28	20	0.040983606557377046	0.005319148936170213	A:0:C:10:G:0:T:234:N:0:O:0	A:0:C:1:G:0:T:187:N:0:O:0	5,135,5,109	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	83	21	28	20	0.03614457831325301	0.0	A:1:C:78:G:3:T:0:N:0:O:1	A:0:C:21:G:0:T:0:N:0:O:0	3,43,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16394	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	20	28	20	0.03571428571428571	0.0	A:0:C:81:G:0:T:3:N:0:O:0	A:0:C:20:G:0:T:0:N:0:O:0	0,46,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	19	28	20	0.02247191011235955	0.0	A:86:C:0:G:2:T:0:N:0:O:1	A:19:C:0:G:0:T:0:N:0:O:0	1,46,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16431	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	12	28	20	0.03260869565217391	0.0	A:86:C:0:G:0:T:3:N:0:O:3	A:12:C:0:G:0:T:0:N:0:O:0	0,51,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	7	28	20	0.04	0.0	A:0:C:0:G:2:T:46:N:0:O:2	A:0:C:0:G:0:T:7:N:0:O:0	1,15,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	74	8	28	20	0.02702702702702703	0.0	A:0:C:0:G:70:T:2:N:0:O:2	A:0:C:0:G:8:T:0:N:0:O:0	2,37,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16558	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	15	28	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:15:T:0:N:0:O:0	2,37,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16585	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	16	28	20	0.037037037037037035	0.0	A:3:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:16:T:0:N:0:O:0	3,41,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16629	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	16	28	20	0.02040816326530612	0.0	A:1:C:0:G:48:T:0:N:0:O:0	A:0:C:0:G:16:T:0:N:0:O:0	1,29,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16770	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	9	28	20	0.02040816326530612	0.0	A:47:C:0:G:1:T:0:N:0:O:1	A:9:C:0:G:0:T:0:N:0:O:0	0,29,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	201	28	20	0.08	0.0	A:0:C:0:G:8:T:91:N:0:O:1	A:0:C:1:G:0:T:200:N:0:O:0	0,46,8,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	161	201	28	20	0.043478260869565216	0.0	A:7:C:0:G:117:T:0:N:0:O:37	A:0:C:0:G:198:T:3:N:0:O:0	0,57,7,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	201	28	20	0.024691358024691357	0.0	A:78:C:2:G:0:T:0:N:0:O:1	A:201:C:0:G:0:T:0:N:0:O:0	2,28,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	183	377	28	20	0.02185792349726776	0.0	A:4:C:0:G:177:T:0:N:0:O:2	A:0:C:0:G:373:T:4:N:0:O:0	4,28,0,155	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	177	28	20	0.030927835051546393	0.0	A:94:C:0:G:3:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	3,37,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	172	28	20	0.030612244897959183	0.0	A:3:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	3,26,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17631	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	171	28	20	0.026785714285714284	0.0	A:108:C:0:G:3:T:1:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	1,39,2,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	355	28	20	0.026881720430107527	0.0028169014084507044	A:0:C:181:G:0:T:5:N:0:O:0	A:1:C:353:G:0:T:1:N:0:O:0	2,100,3,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	359	28	20	0.04054054054054054	0.0	A:0:C:139:G:0:T:6:N:0:O:3	A:1:C:358:G:0:T:0:N:0:O:0	2,102,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	200	28	20	0.02666666666666667	0.0	A:0:C:72:G:0:T:2:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,50,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	200	28	20	0.018867924528301886	0.0	A:92:C:0:G:1:T:2:N:0:O:11	A:200:C:0:G:0:T:0:N:0:O:0	0,49,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	200	28	20	0.06481481481481481	0.0	A:7:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	0,67,7,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	18179	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	54	28	20	0.025	0.0	A:78:C:0:G:0:T:2:N:0:O:0	A:54:C:0:G:0:T:0:N:0:O:0	0,47,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	248	28	20	0.024691358024691357	0.0	A:79:C:0:G:2:T:0:N:0:O:0	A:248:C:0:G:0:T:0:N:0:O:0	2,22,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	248	28	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:247:T:1:N:0:O:0	2,24,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	18730	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	275	28	20	0.021739130434782608	0.0	A:89:C:0:G:0:T:2:N:0:O:1	A:275:C:0:G:0:T:0:N:0:O:0	2,25,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	275	28	20	0.023809523809523808	0.0	A:2:C:0:G:81:T:0:N:0:O:1	A:0:C:0:G:274:T:1:N:0:O:0	2,22,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	276	28	20	0.0425531914893617	0.0	A:43:C:0:G:0:T:2:N:0:O:2	A:276:C:0:G:0:T:0:N:0:O:0	0,21,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	198	28	20	0.02857142857142857	0.0	A:3:C:0:G:99:T:1:N:0:O:2	A:0:C:0:G:195:T:3:N:0:O:0	3,18,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19285	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	7	28	20	0.022727272727272728	0.0	A:1:C:0:G:43:T:0:N:0:O:0	A:0:C:0:G:7:T:0:N:0:O:0	1,23,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19312	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	7	28	20	0.024390243902439025	0.0	A:1:C:0:G:39:T:0:N:0:O:1	A:0:C:0:G:7:T:0:N:0:O:0	1,19,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19332	T	G	T	16	ignore low frequency variant	Pass	False	False	True	41	11	28	20	0.024390243902439025	0.0	A:0:C:0:G:1:T:40:N:0:O:0	A:0:C:0:G:0:T:11:N:0:O:0	0,20,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19339	A	G	A	1	near depth threshold	Alarm	False	False	True	32	11	28	20	0.03125	0.0	A:31:C:0:G:1:T:0:N:0:O:0	A:11:C:0:G:0:T:0:N:0:O:0	1,11,0,21	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	12	28	20	0.022727272727272728	0.0	A:0:C:43:G:0:T:1:N:0:O:0	A:0:C:12:G:0:T:0:N:0:O:0	0,25,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19410	A	C	A	16	ignore low frequency variant	Pass	False	False	True	41	12	28	20	0.024390243902439025	0.0	A:39:C:1:G:0:T:0:N:0:O:1	A:12:C:0:G:0:T:0:N:0:O:0	0,19,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19411	C	A	C	16	ignore low frequency variant	Pass	False	False	True	54	12	28	20	0.018518518518518517	0.0	A:1:C:48:G:0:T:0:N:0:O:5	A:0:C:12:G:0:T:0:N:0:O:0	0,26,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19415	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	12	28	20	0.02127659574468085	0.0	A:1:C:0:G:0:T:46:N:0:O:0	A:0:C:0:G:0:T:12:N:0:O:0	1,21,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19452	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	12	28	20	0.025	0.0	A:0:C:1:G:0:T:39:N:0:O:0	A:1:C:0:G:0:T:11:N:0:O:0	0,23,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19478	G	A	G	1	near depth threshold	Alarm	False	False	True	31	12	28	20	0.03225806451612903	0.0	A:1:C:0:G:30:T:0:N:0:O:0	A:0:C:0:G:12:T:0:N:0:O:0	1,7,0,24	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19484	C	T	C	1	near depth threshold	Alarm	False	False	True	31	12	28	20	0.03225806451612903	0.0	A:0:C:29:G:0:T:1:N:0:O:1	A:0:C:12:G:0:T:0:N:0:O:0	0,25,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	19488	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	11	28	20	0.024390243902439025	0.0	A:0:C:40:G:0:T:1:N:0:O:0	A:0:C:11:G:0:T:0:N:0:O:0	0,28,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	19493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	10	28	20	0.025	0.0	A:1:C:0:G:37:T:0:N:0:O:2	A:0:C:0:G:10:T:0:N:0:O:0	1,16,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19494	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	10	28	20	0.02631578947368421	0.0	A:36:C:0:G:1:T:0:N:0:O:1	A:10:C:0:G:0:T:0:N:0:O:0	1,17,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19536	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	8	28	20	0.02	0.0	A:0:C:47:G:0:T:1:N:0:O:2	A:0:C:8:G:0:T:0:N:0:O:0	0,23,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19538	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	8	28	20	0.020833333333333332	0.0	A:0:C:1:G:0:T:46:N:0:O:1	A:0:C:0:G:0:T:8:N:0:O:0	0,23,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19557	T	C	T	1	near depth threshold	Alarm	False	False	True	32	8	28	20	0.03125	0.0	A:0:C:1:G:0:T:31:N:0:O:0	A:0:C:0:G:0:T:8:N:0:O:0	1,10,0,22	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19562	T	C	T	1	near depth threshold	Alarm	False	False	True	32	8	28	20	0.03125	0.0	A:0:C:1:G:0:T:29:N:0:O:2	A:0:C:0:G:0:T:8:N:0:O:0	1,15,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19658	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	46	28	20	0.020833333333333332	0.0	A:2:C:0:G:92:T:0:N:0:O:2	A:0:C:0:G:45:T:1:N:0:O:0	2,56,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	49	28	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:49:N:0:O:0	0,51,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	115	28	20	0.02	0.0	A:0:C:2:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:115:N:0:O:0	0,56,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	175	28	20	0.041666666666666664	0.0	A:0:C:2:G:0:T:46:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	2,33,0,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	20263	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	14	28	20	0.021052631578947368	0.0	A:2:C:0:G:88:T:0:N:0:O:5	A:0:C:0:G:14:T:0:N:0:O:0	2,35,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	20442	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	20	28	20	0.0297029702970297	0.0	A:98:C:0:G:3:T:0:N:0:O:0	A:19:C:0:G:0:T:1:N:0:O:0	3,47,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	104	28	20	0.02127659574468085	0.0	A:89:C:0:G:2:T:0:N:0:O:3	A:104:C:0:G:0:T:0:N:0:O:0	1,47,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	104	28	20	0.026785714285714284	0.0	A:3:C:108:G:0:T:0:N:0:O:1	A:0:C:104:G:0:T:0:N:0:O:0	0,48,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	90	28	20	0.03305785123966942	0.0	A:117:C:0:G:4:T:0:N:0:O:0	A:89:C:1:G:0:T:0:N:0:O:0	4,41,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	192	28	20	0.037037037037037035	0.0	A:103:C:0:G:4:T:0:N:0:O:1	A:192:C:0:G:0:T:0:N:0:O:0	4,25,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	57	153	28	20	0.07017543859649122	0.0	A:0:C:2:G:4:T:51:N:0:O:0	A:0:C:0:G:0:T:153:N:0:O:0	3,9,1,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21249	G	A	N	1	near depth threshold	Alarm	False	False	False	26	9	28	20	0.038461538461538464	0.0	A:1:C:0:G:25:T:0:N:0:O:0	A:0:C:0:G:9:T:0:N:0:O:0	1,7,0,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21250	A	G	N	1	near depth threshold	Alarm	False	False	False	26	9	28	20	0.038461538461538464	0.0	A:25:C:0:G:1:T:0:N:0:O:0	A:9:C:0:G:0:T:0:N:0:O:0	1,7,0,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21269	C	T	N	1	near depth threshold	Alarm	False	False	False	21	9	28	20	0.047619047619047616	0.0	A:0:C:20:G:0:T:1:N:0:O:0	A:0:C:9:G:0:T:0:N:0:O:0	0,10,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	17	28	20	0.02564102564102564	0.0	A:2:C:0:G:74:T:0:N:0:O:2	A:0:C:0:G:17:T:0:N:0:O:0	2,15,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	22	28	20	0.01904761904761905	0.0	A:2:C:0:G:0:T:86:N:0:O:17	A:0:C:0:G:0:T:22:N:0:O:0	0,75,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	19	28	20	0.02040816326530612	0.0	A:96:C:2:G:0:T:0:N:0:O:0	A:19:C:0:G:0:T:0:N:0:O:0	0,48,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21646	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	18	28	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:18:G:0:T:0:N:0:O:0	1,44,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	180	28	20	0.050724637681159424	0.0	A:0:C:126:G:0:T:7:N:0:O:5	A:2:C:178:G:0:T:0:N:0:O:0	5,38,2,100	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	180	28	20	0.02	0.0	A:4:C:0:G:176:T:0:N:0:O:20	A:0:C:0:G:180:T:0:N:0:O:0	4,96,0,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	88	28	20	0.05	0.011363636363636364	A:0:C:0:G:4:T:76:N:0:O:0	A:0:C:0:G:1:T:87:N:0:O:0	3,29,1,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	22280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	69	28	20	0.031496062992125984	0.0	A:121:C:0:G:4:T:0:N:0:O:2	A:69:C:0:G:0:T:0:N:0:O:0	4,68,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	22381	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	18	28	20	0.02	0.0	A:1:C:0:G:49:T:0:N:0:O:0	A:0:C:0:G:18:T:0:N:0:O:0	1,30,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	176	28	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:91:N:0:O:1	A:0:C:0:G:0:T:176:N:0:O:0	1,85,2,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	22771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	264	28	20	0.020833333333333332	0.0	A:91:C:0:G:2:T:0:N:0:O:3	A:264:C:0:G:0:T:0:N:0:O:0	2,16,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	135	173	28	20	0.022222222222222223	0.0	A:0:C:0:G:3:T:132:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,87,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23129	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	171	28	20	0.020833333333333332	0.0	A:141:C:0:G:3:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	3,69,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23237	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	172	28	20	0.019801980198019802	0.005813953488372093	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:1:G:0:T:171:N:0:O:0	0,55,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23393	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	172	28	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:1:C:171:G:0:T:0:N:0:O:0	0,57,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	122	172	28	20	0.9098360655737705	1.0	A:0:C:0:G:111:T:0:N:0:O:11	A:0:C:0:G:172:T:0:N:0:O:0	47,58,64,64	269.443	1659.1	yes	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	191	28	20	0.024096385542168676	0.005235602094240838	A:2:C:0:G:77:T:0:N:0:O:4	A:1:C:0:G:189:T:1:N:0:O:0	2,11,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	164	28	20	0.033707865168539325	0.0	A:85:C:1:G:3:T:0:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	3,20,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	164	28	20	0.07894736842105263	0.0	A:0:C:70:G:0:T:6:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	0,56,6,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	164	28	20	0.021505376344086023	0.006097560975609756	A:1:C:2:G:0:T:90:N:0:O:0	A:0:C:1:G:0:T:163:N:0:O:0	0,57,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	164	28	20	0.028169014084507043	0.0	A:0:C:65:G:0:T:2:N:0:O:4	A:0:C:164:G:0:T:0:N:0:O:0	1,42,1,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23902	A	T	A	16	ignore low frequency variant	Pass	False	False	True	48	164	28	20	0.020833333333333332	0.0	A:47:C:0:G:0:T:1:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	0,18,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23911	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	164	28	20	0.019801980198019802	0.0	A:98:C:2:G:0:T:0:N:0:O:1	A:164:C:0:G:0:T:0:N:0:O:0	2,35,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	164	28	20	0.025974025974025976	0.0	A:2:C:0:G:0:T:75:N:0:O:0	A:0:C:1:G:0:T:163:N:0:O:0	1,20,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	164	28	20	0.037037037037037035	0.0	A:0:C:76:G:1:T:3:N:0:O:1	A:0:C:164:G:0:T:0:N:0:O:0	0,54,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	174	28	20	0.025974025974025976	0.0	A:0:C:73:G:0:T:2:N:0:O:2	A:0:C:174:G:0:T:0:N:0:O:0	0,55,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24241	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	174	28	20	0.037037037037037035	0.0	A:49:C:0:G:2:T:0:N:0:O:3	A:174:C:0:G:0:T:0:N:0:O:0	0,37,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24242	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	174	28	20	0.02127659574468085	0.0	A:1:C:0:G:0:T:45:N:0:O:1	A:0:C:0:G:0:T:174:N:0:O:0	0,33,1,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	174	28	20	0.030303030303030304	0.0	A:0:C:57:G:0:T:2:N:0:O:7	A:0:C:174:G:0:T:0:N:0:O:0	0,54,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	174	28	20	0.023255813953488372	0.0	A:2:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:174:T:0:N:0:O:0	2,21,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	174	28	20	0.03669724770642202	0.0	A:4:C:0:G:105:T:0:N:0:O:0	A:0:C:0:G:174:T:0:N:0:O:0	3,39,1,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24299	C	G	C	16	ignore low frequency variant	Pass	False	False	True	101	174	28	20	0.019801980198019802	0.0	A:0:C:98:G:2:T:0:N:0:O:1	A:0:C:174:G:0:T:0:N:0:O:0	0,52,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24395	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	174	28	20	0.022727272727272728	0.0	A:2:C:84:G:0:T:0:N:0:O:2	A:0:C:174:G:0:T:0:N:0:O:0	0,40,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	174	28	20	0.031914893617021274	0.005747126436781609	A:1:C:0:G:90:T:3:N:0:O:0	A:0:C:0:G:173:T:1:N:0:O:0	0,47,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	189	28	20	0.041237113402061855	0.0	A:1:C:89:G:0:T:4:N:0:O:3	A:1:C:188:G:0:T:0:N:0:O:0	0,50,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	189	28	20	0.0449438202247191	0.0	A:0:C:83:G:0:T:4:N:0:O:2	A:0:C:189:G:0:T:0:N:0:O:0	0,63,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	110	28	20	0.017241379310344827	0.0	A:2:C:0:G:97:T:0:N:0:O:17	A:0:C:0:G:109:T:1:N:0:O:0	2,44,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	127	28	20	0.02040816326530612	0.0	A:95:C:0:G:2:T:0:N:0:O:1	A:127:C:0:G:0:T:0:N:0:O:0	2,31,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	172	28	20	0.041666666666666664	0.005813953488372093	A:4:C:0:G:92:T:0:N:0:O:0	A:1:C:1:G:170:T:0:N:0:O:0	0,53,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	172	28	20	0.031578947368421054	0.0	A:0:C:0:G:3:T:92:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	0,59,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	37	149	28	20	0.02702702702702703	0.0	A:0:C:1:G:0:T:36:N:0:O:0	A:0:C:0:G:0:T:149:N:0:O:0	1,24,0,13	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	25163	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	181	28	20	0.024390243902439025	0.0	A:3:C:116:G:0:T:0:N:0:O:4	A:0:C:181:G:0:T:0:N:0:O:0	3,77,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	181	28	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:179:T:2:N:0:O:0	2,49,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	177	28	20	0.025	0.0	A:1:C:0:G:3:T:115:N:0:O:1	A:0:C:0:G:0:T:177:N:0:O:0	3,47,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	178	28	20	0.018518518518518517	0.0	A:0:C:98:G:0:T:2:N:0:O:8	A:0:C:177:G:0:T:0:N:0:O:1	1,78,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25552	G	C	G	16	ignore low frequency variant	Pass	False	False	True	76	177	28	20	0.039473684210526314	0.0	A:0:C:3:G:67:T:2:N:0:O:4	A:0:C:0:G:177:T:0:N:0:O:0	3,23,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25553	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	177	28	20	0.030303030303030304	0.0	A:0:C:59:G:0:T:2:N:0:O:5	A:0:C:177:G:0:T:0:N:0:O:0	2,19,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	177	28	20	0.028037383177570093	0.0	A:0:C:0:G:3:T:103:N:0:O:1	A:0:C:0:G:0:T:177:N:0:O:0	3,53,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	134	177	28	20	1.0	1.0	A:0:C:0:G:0:T:134:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	71,71,63,63	280.0	2544.1	yes	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	145	177	28	20	0.034482758620689655	0.005649717514124294	A:5:C:126:G:0:T:0:N:0:O:14	A:1:C:176:G:0:T:0:N:0:O:0	5,84,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	72	188	28	20	0.041666666666666664	0.0	A:0:C:3:G:66:T:0:N:0:O:3	A:0:C:0:G:188:T:0:N:0:O:0	3,15,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	189	28	20	0.03296703296703297	0.0	A:0:C:82:G:0:T:3:N:0:O:6	A:0:C:188:G:0:T:0:N:0:O:1	3,59,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	42	188	28	20	0.14285714285714285	0.0	A:35:C:6:G:0:T:0:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:0	1,20,5,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	188	28	20	0.02857142857142857	0.0	A:99:C:0:G:3:T:0:N:0:O:3	A:188:C:0:G:0:T:0:N:0:O:0	3,36,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	111	52	28	20	0.02702702702702703	0.0	A:107:C:3:G:0:T:0:N:0:O:1	A:52:C:0:G:0:T:0:N:0:O:0	2,44,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26144	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	53	28	20	0.06779661016949153	0.0	A:0:C:0:G:107:T:8:N:0:O:3	A:0:C:0:G:53:T:0:N:0:O:0	4,60,4,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	238	28	20	0.02608695652173913	0.0	A:0:C:85:G:0:T:3:N:0:O:27	A:0:C:237:G:0:T:0:N:0:O:1	1,110,2,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26356	C	G	C	16	ignore low frequency variant	Pass	False	False	True	119	271	28	20	0.025210084033613446	0.0	A:1:C:110:G:3:T:0:N:0:O:5	A:3:C:268:G:0:T:0:N:0:O:0	0,92,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	272	28	20	0.02586206896551724	0.0	A:0:C:89:G:0:T:3:N:0:O:24	A:1:C:270:G:0:T:0:N:0:O:1	0,107,3,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	191	28	20	0.031914893617021274	0.0	A:0:C:90:G:0:T:3:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,70,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	175	28	20	0.023622047244094488	0.0	A:0:C:3:G:0:T:124:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,95,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	175	28	20	0.06521739130434782	0.0	A:82:C:0:G:0:T:6:N:0:O:4	A:175:C:0:G:0:T:0:N:0:O:0	6,31,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	175	28	20	0.09210526315789473	0.0	A:7:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	7,14,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	175	28	20	0.027522935779816515	0.0	A:0:C:106:G:0:T:3:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,92,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	174	28	20	0.034482758620689655	0.0	A:110:C:0:G:4:T:1:N:0:O:1	A:174:C:0:G:0:T:0:N:0:O:0	4,64,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27068	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	271	28	20	0.019230769230769232	0.0	A:93:C:0:G:2:T:0:N:0:O:9	A:271:C:0:G:0:T:0:N:0:O:0	2,48,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	272	28	20	0.038461538461538464	0.0	A:75:C:0:G:3:T:0:N:0:O:0	A:272:C:0:G:0:T:0:N:0:O:0	3,25,0,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	257	28	20	0.08333333333333333	0.0	A:0:C:77:G:0:T:7:N:0:O:0	A:0:C:256:G:1:T:0:N:0:O:0	0,64,7,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	257	28	20	0.024390243902439025	0.0	A:0:C:80:G:0:T:2:N:0:O:0	A:2:C:255:G:0:T:0:N:0:O:0	0,69,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	172	28	20	0.027522935779816515	0.0	A:0:C:3:G:0:T:106:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	0,57,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	36	28	20	0.024390243902439025	0.0	A:78:C:0:G:2:T:0:N:0:O:2	A:36:C:0:G:0:T:0:N:0:O:0	1,28,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	82	36	28	20	0.036585365853658534	0.0	A:3:C:78:G:0:T:0:N:0:O:1	A:0:C:36:G:0:T:0:N:0:O:0	3,44,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	36	28	20	0.02054794520547945	0.0	A:109:C:0:G:0:T:3:N:0:O:34	A:36:C:0:G:0:T:0:N:0:O:0	3,85,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	88	28	20	0.025423728813559324	0.0	A:3:C:0:G:114:T:0:N:0:O:1	A:0:C:0:G:88:T:0:N:0:O:0	3,33,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	88	28	20	0.02586206896551724	0.0	A:112:C:0:G:3:T:0:N:0:O:1	A:88:C:0:G:0:T:0:N:0:O:0	3,32,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	182	28	20	0.02247191011235955	0.0	A:83:C:0:G:1:T:2:N:0:O:3	A:181:C:0:G:0:T:0:N:0:O:1	2,39,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28393	T	C	C	13	new position validated by illumina	Pass	False	True	True	127	182	28	20	0.905511811023622	0.9945054945054945	A:0:C:115:G:0:T:8:N:0:O:4	A:1:C:181:G:0:T:0:N:0:O:0	63,68,52,59	276.227	1245.6	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	182	28	20	0.022988505747126436	0.0	A:81:C:0:G:0:T:2:N:0:O:4	A:182:C:0:G:0:T:0:N:0:O:0	2,28,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	182	28	20	0.03333333333333333	0.0	A:0:C:54:G:0:T:2:N:0:O:4	A:0:C:182:G:0:T:0:N:0:O:0	0,34,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28586	A	C	A	16	ignore low frequency variant	Pass	False	False	True	88	174	28	20	0.022727272727272728	0.0	A:86:C:2:G:0:T:0:N:0:O:0	A:174:C:0:G:0:T:0:N:0:O:0	2,44,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28588	T	G	T	16	ignore low frequency variant	Pass	False	False	True	64	174	28	20	0.046875	0.0	A:0:C:0:G:3:T:59:N:0:O:2	A:0:C:0:G:0:T:174:N:0:O:0	3,13,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	174	28	20	0.031746031746031744	0.0	A:0:C:60:G:0:T:2:N:0:O:1	A:1:C:173:G:0:T:0:N:0:O:0	2,11,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	174	28	20	0.0273972602739726	0.0	A:0:C:2:G:0:T:71:N:0:O:0	A:0:C:0:G:0:T:174:N:0:O:0	0,49,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	161	28	20	0.02631578947368421	0.0	A:0:C:74:G:0:T:2:N:0:O:0	A:0:C:161:G:0:T:0:N:0:O:0	0,20,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	161	28	20	0.023809523809523808	0.0	A:0:C:78:G:0:T:2:N:0:O:4	A:0:C:161:G:0:T:0:N:0:O:0	0,28,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	161	28	20	0.027522935779816515	0.0	A:3:C:0:G:105:T:0:N:0:O:1	A:0:C:0:G:160:T:1:N:0:O:0	3,10,0,99	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	162	28	20	0.019230769230769232	0.006172839506172839	A:0:C:48:G:0:T:1:N:0:O:3	A:0:C:160:G:0:T:1:N:0:O:1	0,17,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	13	28	20	0.05405405405405406	0.0	A:34:C:0:G:2:T:0:N:0:O:1	A:13:C:0:G:0:T:0:N:0:O:0	0,1,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	167	16	28	20	0.029940119760479042	0.0	A:5:C:0:G:0:T:159:N:0:O:3	A:0:C:0:G:0:T:16:N:0:O:0	0,87,5,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29659	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	16	28	20	0.01818181818181818	0.0	A:0:C:144:G:0:T:3:N:0:O:18	A:0:C:16:G:0:T:0:N:0:O:0	1,65,2,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29704	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	18	28	20	0.022727272727272728	0.0	A:81:C:0:G:2:T:0:N:0:O:5	A:18:C:0:G:0:T:0:N:0:O:0	2,64,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	57	19	28	20	0.05263157894736842	0.0	A:0:C:3:G:50:T:0:N:0:O:4	A:0:C:0:G:19:T:0:N:0:O:0	3,26,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	40	19	28	20	0.025	0.0	A:0:C:37:G:1:T:0:N:0:O:2	A:0:C:19:G:0:T:0:N:0:O:0	1,20,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29802	C	A	C	16	ignore low frequency variant	Pass	False	False	True	39	20	28	20	0.02564102564102564	0.0	A:1:C:38:G:0:T:0:N:0:O:0	A:0:C:20:G:0:T:0:N:0:O:0	1,18,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	29835	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	21	28	20	0.03508771929824561	0.0	A:0:C:55:G:0:T:2:N:0:O:0	A:0:C:21:G:0:T:0:N:0:O:0	0,30,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00041	artic-pipeline	NB07	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	338	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	17304	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	19554	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	61	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00041	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	143	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	197	28	20	0.023809523809523808	0.0	A:0:C:41:G:0:T:1:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,15,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	193	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	200	28	20	0.022222222222222223	0.0	A:0:C:43:G:0:T:1:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,9,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	209	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	199	28	20	0.02040816326530612	0.0	A:0:C:0:G:1:T:48:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,11,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	211	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	198	28	20	0.022727272727272728	0.0	A:0:C:1:G:0:T:42:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:0	0,10,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	58	197	28	20	0.9827586206896551	1.0	A:0:C:0:G:0:T:57:N:0:O:1	A:0:C:0:G:0:T:197:N:0:O:0	12,13,45,45	210.0	1685.4	yes	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	300	C	A	C	16	ignore low frequency variant	Pass	False	False	True	51	197	28	20	0.0196078431372549	0.0	A:1:C:48:G:0:T:0:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	1,10,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	45	197	28	20	0.022222222222222223	0.0	A:1:C:0:G:0:T:44:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	1,3,0,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	197	28	20	0.02564102564102564	0.0	A:38:C:0:G:1:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	1,5,0,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	435	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	332	28	20	0.024096385542168676	0.0	A:81:C:0:G:2:T:0:N:0:O:0	A:332:C:0:G:0:T:0:N:0:O:0	0,31,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	439	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	333	28	20	0.03389830508474576	0.0	A:56:C:0:G:2:T:0:N:0:O:1	A:333:C:0:G:0:T:0:N:0:O:0	0,7,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	284	28	20	0.021052631578947368	0.0	A:2:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:284:T:0:N:0:O:0	2,28,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	284	28	20	0.024096385542168676	0.0	A:2:C:0:G:78:T:0:N:0:O:3	A:0:C:0:G:284:T:0:N:0:O:0	2,24,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	198	28	20	0.09523809523809523	0.0	A:4:C:0:G:37:T:0:N:0:O:1	A:0:C:0:G:197:T:1:N:0:O:0	4,12,0,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	135	198	28	20	1.0	1.0	A:0:C:0:G:0:T:135:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	103,103,32,32	275.463	1588.3	yes	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	198	28	20	0.03418803418803419	0.0	A:4:C:112:G:0:T:0:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	4,86,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	198	28	20	0.021739130434782608	0.0	A:126:C:0:G:0:T:3:N:0:O:9	A:198:C:0:G:0:T:0:N:0:O:0	3,105,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1122	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	198	28	20	0.022727272727272728	0.005050505050505051	A:3:C:118:G:1:T:0:N:0:O:10	A:1:C:197:G:0:T:0:N:0:O:0	3,104,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	197	28	20	0.02564102564102564	0.0	A:38:C:0:G:1:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	0,8,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	200	28	20	0.07936507936507936	0.0	A:5:C:0:G:48:T:0:N:0:O:10	A:0:C:0:G:198:T:0:N:0:O:2	3,23,2,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	196	28	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	1,61,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	198	28	20	0.0392156862745098	0.005050505050505051	A:2:C:0:G:46:T:0:N:0:O:3	A:1:C:0:G:197:T:0:N:0:O:0	2,19,0,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	198	28	20	0.025974025974025976	0.0	A:0:C:2:G:0:T:74:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:0	0,71,2,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	197	28	20	0.034482758620689655	0.0	A:2:C:0:G:55:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	2,32,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	342	28	20	0.04081632653061224	0.0	A:0:C:94:G:0:T:4:N:0:O:0	A:2:C:340:G:0:T:0:N:0:O:0	0,47,4,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	342	28	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:90:N:0:O:0	A:0:C:0:G:0:T:342:N:0:O:0	0,45,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	200	28	20	0.02608695652173913	0.0	A:1:C:3:G:0:T:110:N:0:O:1	A:0:C:0:G:0:T:200:N:0:O:0	0,50,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	222	396	28	20	0.036036036036036036	0.0	A:0:C:211:G:0:T:8:N:0:O:3	A:0:C:396:G:0:T:0:N:0:O:0	0,91,8,131	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	67	198	28	20	0.029850746268656716	0.0	A:63:C:2:G:0:T:0:N:0:O:2	A:198:C:0:G:0:T:0:N:0:O:0	1,34,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1698	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	198	28	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,45,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	198	28	20	0.02564102564102564	0.0	A:0:C:2:G:0:T:75:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:0	0,32,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1917	C	T	T	17	accept high frequency variant	Pass	False	True	True	279	395	28	20	0.992831541218638	1.0	A:0:C:2:G:0:T:277:N:0:O:0	A:0:C:0:G:0:T:395:N:0:O:0	98,98,179,181	209.237	1785.7	yes	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	2028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	197	28	20	0.021739130434782608	0.0	A:0:C:135:G:0:T:3:N:0:O:0	A:0:C:196:G:1:T:0:N:0:O:0	0,51,3,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	2029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	197	28	20	0.02127659574468085	0.0	A:0:C:3:G:0:T:135:N:0:O:3	A:0:C:0:G:0:T:197:N:0:O:0	0,48,3,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	197	28	20	0.075	0.0	A:9:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:196:T:1:N:0:O:0	9,16,0,104	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	2306	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	276	28	20	0.12280701754385964	0.08333333333333333	A:0:C:100:G:0:T:14:N:0:O:0	A:0:C:253:G:0:T:23:N:0:O:0	9,49,5,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	2398	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	277	28	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:277:T:0:N:0:O:0	2,24,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	2625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	197	28	20	0.022222222222222223	0.0	A:3:C:0:G:132:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	3,65,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	114	197	28	20	0.6842105263157895	1.0	A:0:C:0:G:0:T:78:N:0:O:36	A:0:C:0:G:0:T:197:N:0:O:0	43,79,35,35	470.992	1496.5	yes	.	.	.	mixed position	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	198	28	20	0.020833333333333332	0.0	A:0:C:0:G:80:T:2:N:0:O:14	A:0:C:0:G:198:T:0:N:0:O:0	0,64,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	194	28	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:103:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,53,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	195	28	20	0.03409090909090909	0.0	A:84:C:0:G:3:T:1:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	0,50,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	195	28	20	0.02247191011235955	0.0	A:87:C:0:G:0:T:2:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	0,53,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	195	28	20	0.0196078431372549	0.0	A:49:C:0:G:0:T:1:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	1,17,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	195	28	20	0.044444444444444446	0.0	A:43:C:0:G:2:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	1,1,1,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	193	28	20	0.02631578947368421	0.0	A:2:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	0,36,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	190	28	20	0.03333333333333333	0.0	A:1:C:55:G:0:T:2:N:0:O:2	A:0:C:190:G:0:T:0:N:0:O:0	0,36,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	4322	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	190	28	20	0.02857142857142857	0.0	A:0:C:0:G:1:T:34:N:0:O:0	A:0:C:0:G:0:T:190:N:0:O:0	1,32,0,3	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	163	383	28	20	0.03067484662576687	0.007832898172323759	A:0:C:0:G:139:T:5:N:0:O:19	A:0:C:0:G:380:T:3:N:0:O:0	0,138,5,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	194	28	20	0.022388059701492536	0.0	A:0:C:0:G:131:T:3:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	3,66,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	4922	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	195	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	1,77,1,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	143	196	28	20	0.027972027972027972	0.0	A:0:C:0:G:4:T:136:N:0:O:3	A:0:C:0:G:0:T:196:N:0:O:0	0,83,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5129	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	196	28	20	0.023809523809523808	0.0	A:3:C:122:G:0:T:1:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	2,60,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5179	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	196	28	20	0.024390243902439025	0.0	A:0:C:3:G:0:T:112:N:0:O:8	A:0:C:0:G:0:T:196:N:0:O:0	0,57,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	199	28	20	0.0963855421686747	0.0	A:0:C:74:G:0:T:8:N:0:O:1	A:0:C:199:G:0:T:0:N:0:O:0	0,67,8,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	199	28	20	0.029850746268656716	0.0	A:1:C:2:G:0:T:64:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	0,51,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	200	28	20	0.029411764705882353	0.0	A:3:C:0:G:81:T:0:N:0:O:18	A:0:C:0:G:199:T:0:N:0:O:1	1,27,2,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	198	28	20	0.049019607843137254	0.0	A:97:C:0:G:5:T:0:N:0:O:0	A:198:C:0:G:0:T:0:N:0:O:0	0,60,5,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5940	T	G	T	16	ignore low frequency variant	Pass	False	False	True	122	197	28	20	0.02459016393442623	0.0	A:0:C:0:G:3:T:117:N:0:O:2	A:0:C:0:G:0:T:197:N:0:O:0	3,71,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	5996	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	198	28	20	0.02727272727272727	0.0	A:3:C:106:G:0:T:0:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	1,61,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	198	28	20	0.04081632653061224	0.0	A:0:C:93:G:0:T:4:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,82,4,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	198	28	20	0.034482758620689655	0.0	A:0:C:112:G:0:T:4:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	4,68,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	189	28	20	0.03260869565217391	0.005291005291005291	A:1:C:86:G:0:T:3:N:0:O:2	A:0:C:188:G:0:T:1:N:0:O:0	0,67,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	189	28	20	0.031746031746031744	0.0	A:61:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,39,0,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	189	28	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:90:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	0,61,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	189	28	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	0,46,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	196	28	20	0.02459016393442623	0.0	A:119:C:0:G:3:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	3,70,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	194	28	20	0.02666666666666667	0.0	A:0:C:73:G:0:T:2:N:0:O:0	A:1:C:193:G:0:T:0:N:0:O:0	2,45,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6700	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	196	28	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	1,61,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	200	380	28	20	0.035	0.0	A:181:C:0:G:7:T:1:N:0:O:11	A:380:C:0:G:0:T:0:N:0:O:0	7,86,0,114	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	198	28	20	0.02830188679245283	0.0	A:3:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	3,32,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	6849	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	198	28	20	0.0196078431372549	0.0	A:0:C:98:G:0:T:2:N:0:O:2	A:0:C:198:G:0:T:0:N:0:O:0	0,45,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	74	197	28	20	0.10810810810810811	0.0	A:65:C:0:G:0:T:8:N:0:O:1	A:197:C:0:G:0:T:0:N:0:O:0	0,51,8,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	198	28	20	0.0821917808219178	0.0	A:6:C:0:G:64:T:0:N:0:O:3	A:0:C:0:G:197:T:1:N:0:O:0	6,21,0,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	198	28	20	0.030927835051546393	0.0	A:0:C:93:G:0:T:3:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	3,40,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	7591	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	198	28	20	0.023529411764705882	0.0	A:82:C:0:G:2:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	2,36,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	7592	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	198	28	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	2,47,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	200	28	20	0.030927835051546393	0.0	A:94:C:3:G:0:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	0,64,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	8131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	200	28	20	0.0196078431372549	0.0	A:2:C:0:G:98:T:0:N:0:O:2	A:0:C:0:G:199:T:1:N:0:O:0	2,32,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	198	28	20	0.02654867256637168	0.0	A:109:C:0:G:0:T:3:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	3,57,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	198	28	20	0.03508771929824561	0.0	A:0:C:4:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,77,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	8676	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	199	28	20	0.024096385542168676	0.0	A:1:C:0:G:78:T:2:N:0:O:2	A:0:C:0:G:199:T:0:N:0:O:0	2,37,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	8803	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	199	28	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	0,59,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	199	28	20	0.0273972602739726	0.0	A:2:C:0:G:67:T:0:N:0:O:4	A:0:C:0:G:199:T:0:N:0:O:0	2,4,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	195	28	20	0.022727272727272728	0.0	A:2:C:0:G:0:T:82:N:0:O:4	A:0:C:0:G:0:T:195:N:0:O:0	2,21,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	195	28	20	0.028037383177570093	0.0	A:3:C:0:G:104:T:0:N:0:O:0	A:0:C:0:G:194:T:1:N:0:O:0	3,33,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	197	28	20	0.021505376344086023	0.0	A:0:C:89:G:0:T:2:N:0:O:2	A:0:C:197:G:0:T:0:N:0:O:0	0,49,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	396	28	20	0.03571428571428571	0.0	A:0:C:129:G:0:T:5:N:0:O:6	A:0:C:396:G:0:T:0:N:0:O:0	1,114,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	54	396	28	20	0.037037037037037035	0.0	A:0:C:2:G:0:T:52:N:0:O:0	A:1:C:0:G:0:T:395:N:0:O:0	0,51,2,3	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	198	28	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	2,32,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	198	28	20	0.0410958904109589	0.0	A:3:C:0:G:70:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	3,14,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	198	28	20	0.033707865168539325	0.0	A:0:C:79:G:0:T:3:N:0:O:7	A:0:C:198:G:0:T:0:N:0:O:0	3,23,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	10285	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	199	28	20	0.02608695652173913	0.0	A:0:C:0:G:3:T:110:N:0:O:2	A:0:C:0:G:0:T:199:N:0:O:0	0,50,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	10286	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	199	28	20	0.038834951456310676	0.0	A:99:C:0:G:4:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	0,40,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	199	28	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:86:N:0:O:4	A:0:C:0:G:0:T:199:N:0:O:0	0,27,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	199	28	20	0.07446808510638298	0.0	A:1:C:86:G:0:T:7:N:0:O:0	A:1:C:198:G:0:T:0:N:0:O:0	0,53,7,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	199	28	20	0.0392156862745098	0.0	A:0:C:0:G:4:T:92:N:0:O:6	A:0:C:0:G:0:T:199:N:0:O:0	0,47,4,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	10969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	199	28	20	0.023255813953488372	0.0	A:0:C:84:G:0:T:2:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	1,29,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	169	200	28	20	0.01775147928994083	0.005	A:1:C:0:G:114:T:3:N:0:O:51	A:0:C:0:G:197:T:1:N:0:O:2	0,69,3,100	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	196	28	20	0.03076923076923077	0.0	A:60:C:0:G:2:T:1:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	0,49,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	198	28	20	0.020202020202020204	0.0	A:0:C:0:G:97:T:2:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	0,54,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	201	28	20	0.03488372093023256	0.0	A:0:C:64:G:0:T:3:N:0:O:19	A:2:C:196:G:0:T:0:N:0:O:3	0,77,3,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	390	28	20	0.02857142857142857	0.002564102564102564	A:135:C:0:G:4:T:0:N:0:O:1	A:389:C:0:G:1:T:0:N:0:O:0	1,52,3,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12263	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	193	28	20	0.021739130434782608	0.0	A:87:C:0:G:2:T:0:N:0:O:3	A:193:C:0:G:0:T:0:N:0:O:0	2,46,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12264	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	193	28	20	0.031578947368421054	0.0	A:88:C:0:G:3:T:1:N:0:O:3	A:193:C:0:G:0:T:0:N:0:O:0	3,49,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	193	28	20	0.02127659574468085	0.0	A:2:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:193:T:0:N:0:O:0	2,48,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	193	28	20	0.021052631578947368	0.0	A:2:C:0:G:71:T:0:N:0:O:22	A:0:C:0:G:193:T:0:N:0:O:0	0,77,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	88	193	28	20	0.022727272727272728	0.0	A:86:C:2:G:0:T:0:N:0:O:0	A:193:C:0:G:0:T:0:N:0:O:0	2,49,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	193	28	20	0.021052631578947368	0.0	A:2:C:0:G:87:T:0:N:0:O:6	A:0:C:0:G:193:T:0:N:0:O:0	2,34,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	195	28	20	0.025	0.0	A:0:C:78:G:0:T:2:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,67,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12772	A	G	A	16	ignore low frequency variant	Pass	False	False	True	176	390	28	20	0.028409090909090908	0.0	A:169:C:0:G:5:T:0:N:0:O:2	A:390:C:0:G:0:T:0:N:0:O:0	4,53,1,123	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	195	28	20	0.03	0.0	A:96:C:0:G:3:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	3,45,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	195	28	20	0.038834951456310676	0.0	A:98:C:0:G:4:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	4,32,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	195	28	20	0.028846153846153848	0.005128205128205128	A:0:C:100:G:0:T:3:N:0:O:1	A:0:C:194:G:0:T:1:N:0:O:0	0,55,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	170	196	28	20	0.029411764705882353	0.0	A:5:C:1:G:0:T:152:N:0:O:12	A:0:C:0:G:0:T:196:N:0:O:0	4,79,1,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	193	28	20	0.020618556701030927	0.0	A:92:C:0:G:2:T:0:N:0:O:3	A:193:C:0:G:0:T:0:N:0:O:0	2,51,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	193	28	20	0.06896551724137931	0.0	A:0:C:81:G:0:T:6:N:0:O:0	A:0:C:193:G:0:T:0:N:0:O:0	0,77,6,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13486	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	193	28	20	0.020833333333333332	0.0	A:1:C:0:G:92:T:2:N:0:O:1	A:0:C:0:G:193:T:0:N:0:O:0	2,52,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	193	28	20	0.05952380952380952	0.0	A:5:C:0:G:75:T:0:N:0:O:4	A:0:C:0:G:193:T:0:N:0:O:0	5,30,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	193	28	20	0.02197802197802198	0.0051813471502590676	A:2:C:82:G:0:T:0:N:0:O:7	A:1:C:192:G:0:T:0:N:0:O:0	2,44,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	193	28	20	0.019801980198019802	0.0	A:97:C:0:G:2:T:0:N:0:O:2	A:193:C:0:G:0:T:0:N:0:O:0	2,54,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	197	28	20	0.041666666666666664	0.0	A:46:C:0:G:2:T:0:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	0,4,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	14347	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	199	28	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	2,50,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	14348	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	199	28	20	0.024691358024691357	0.0	A:79:C:0:G:2:T:0:N:0:O:0	A:199:C:0:G:0:T:0:N:0:O:0	2,51,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	84	199	28	20	0.9761904761904762	0.9949748743718593	A:0:C:0:G:0:T:82:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:1	33,35,49,49	322.804	1206.0	yes	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	199	28	20	0.023529411764705882	0.0	A:2:C:81:G:0:T:0:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	0,43,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	197	28	20	0.042105263157894736	0.0	A:4:C:0:G:89:T:0:N:0:O:2	A:0:C:0:G:197:T:0:N:0:O:0	4,49,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	196	28	20	0.02654867256637168	0.0	A:0:C:109:G:0:T:3:N:0:O:1	A:0:C:196:G:0:T:0:N:0:O:0	0,90,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	197	28	20	0.02727272727272727	0.0	A:3:C:0:G:105:T:0:N:0:O:2	A:0:C:0:G:197:T:0:N:0:O:0	3,65,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	198	28	20	0.01904761904761905	0.0	A:0:C:92:G:0:T:2:N:0:O:11	A:0:C:198:G:0:T:0:N:0:O:0	0,50,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	198	28	20	0.041666666666666664	0.0	A:4:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	4,28,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	198	28	20	0.041666666666666664	0.005050505050505051	A:0:C:3:G:0:T:67:N:0:O:2	A:0:C:1:G:0:T:197:N:0:O:0	0,63,3,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	15298	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	200	28	20	0.023529411764705882	0.0	A:0:C:82:G:0:T:2:N:0:O:1	A:1:C:199:G:0:T:0:N:0:O:0	0,26,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	63	200	28	20	0.015873015873015872	0.0	A:1:C:0:G:0:T:46:N:0:O:16	A:0:C:0:G:0:T:200:N:0:O:0	0,35,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	200	28	20	0.020833333333333332	0.0	A:0:C:46:G:0:T:1:N:0:O:1	A:0:C:200:G:0:T:0:N:0:O:0	0,27,1,21	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	15953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	200	28	20	0.023255813953488372	0.0	A:0:C:2:G:0:T:84:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	2,43,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	197	28	20	0.024390243902439025	0.0	A:0:C:0:G:2:T:76:N:0:O:4	A:0:C:0:G:0:T:197:N:0:O:0	2,23,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	197	28	20	0.04310344827586207	0.0	A:0:C:0:G:107:T:5:N:0:O:4	A:0:C:0:G:197:T:0:N:0:O:0	5,62,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	198	28	20	0.030927835051546393	0.0	A:3:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	3,33,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	16827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	198	28	20	0.024691358024691357	0.0	A:2:C:0:G:78:T:0:N:0:O:1	A:0:C:0:G:198:T:0:N:0:O:0	2,22,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	198	28	20	0.031914893617021274	0.0	A:0:C:90:G:0:T:3:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,64,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	66	198	28	20	0.045454545454545456	0.0	A:63:C:3:G:0:T:0:N:0:O:0	A:197:C:0:G:0:T:1:N:0:O:0	3,34,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	392	28	20	0.039735099337748346	0.0	A:6:C:0:G:142:T:0:N:0:O:3	A:0:C:0:G:391:T:1:N:0:O:0	6,35,0,116	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	195	28	20	0.05454545454545454	0.0	A:52:C:0:G:3:T:0:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	3,9,0,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	61	195	28	20	0.06557377049180328	0.0	A:4:C:0:G:0:T:53:N:0:O:4	A:0:C:0:G:0:T:195:N:0:O:0	4,14,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	195	28	20	0.02727272727272727	0.0	A:3:C:1:G:105:T:0:N:0:O:1	A:0:C:0:G:195:T:0:N:0:O:0	3,44,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	195	28	20	0.028846153846153848	0.0	A:3:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:195:T:0:N:0:O:0	3,52,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	195	28	20	0.030303030303030304	0.0	A:0:C:96:G:0:T:3:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,58,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	392	28	20	0.0213903743315508	0.0	A:0:C:183:G:0:T:4:N:0:O:0	A:1:C:391:G:0:T:0:N:0:O:0	2,117,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17844	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	197	28	20	0.020618556701030927	0.0	A:93:C:0:G:0:T:2:N:0:O:2	A:197:C:0:G:0:T:0:N:0:O:0	2,50,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	197	28	20	0.046153846153846156	0.0	A:0:C:60:G:2:T:3:N:0:O:0	A:0:C:197:G:0:T:0:N:0:O:0	0,45,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17846	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	197	28	20	0.03529411764705882	0.0	A:74:C:0:G:3:T:2:N:0:O:6	A:197:C:0:G:0:T:0:N:0:O:0	3,42,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	197	28	20	0.07766990291262135	0.0	A:8:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	0,71,8,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	197	28	20	0.019417475728155338	0.0	A:0:C:97:G:0:T:2:N:0:O:4	A:0:C:196:G:0:T:0:N:0:O:1	0,84,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	196	28	20	0.020689655172413793	0.0	A:0:C:142:G:0:T:3:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,93,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	201	28	20	0.03773584905660377	0.0	A:0:C:0:G:4:T:102:N:0:O:0	A:0:C:0:G:0:T:201:N:0:O:0	2,34,2,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	150	273	28	20	0.02	0.003663003663003663	A:0:C:0:G:147:T:3:N:0:O:0	A:0:C:0:G:272:T:1:N:0:O:0	0,97,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	18562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	158	197	28	20	0.02531645569620253	0.0	A:154:C:0:G:0:T:4:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	0,88,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	197	28	20	0.02564102564102564	0.0	A:2:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:196:T:1:N:0:O:0	2,18,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	197	28	20	0.025	0.0	A:35:C:0:G:0:T:1:N:0:O:4	A:197:C:0:G:0:T:0:N:0:O:0	0,16,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	18802	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	197	28	20	0.02	0.005076142131979695	A:97:C:0:G:2:T:0:N:0:O:1	A:196:C:0:G:1:T:0:N:0:O:0	1,49,1,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	197	28	20	0.032520325203252036	0.0	A:4:C:0:G:114:T:0:N:0:O:5	A:0:C:0:G:195:T:2:N:0:O:0	4,23,0,100	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	220	28	20	0.04040404040404041	0.0	A:4:C:0:G:91:T:0:N:0:O:4	A:0:C:0:G:220:T:0:N:0:O:0	4,38,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	203	28	20	0.08333333333333333	0.0	A:0:C:74:G:0:T:7:N:0:O:3	A:0:C:203:G:0:T:0:N:0:O:0	0,64,7,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	19489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	199	28	20	0.02857142857142857	0.0	A:0:C:3:G:0:T:100:N:0:O:2	A:0:C:0:G:0:T:199:N:0:O:0	0,70,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	162	197	28	20	0.024691358024691357	0.0	A:4:C:0:G:0:T:127:N:0:O:31	A:0:C:0:G:0:T:196:N:0:O:1	1,68,3,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	196	28	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:94:N:0:O:2	A:0:C:0:G:0:T:196:N:0:O:0	0,59,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20069	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	244	28	20	0.020689655172413793	0.0	A:0:C:0:G:132:T:3:N:0:O:10	A:0:C:0:G:244:T:0:N:0:O:0	3,74,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	244	28	20	0.02608695652173913	0.0	A:0:C:110:G:0:T:3:N:0:O:2	A:3:C:241:G:0:T:0:N:0:O:0	1,63,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20397	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	199	28	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:199:T:0:N:0:O:0	3,46,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20713	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	197	28	20	0.030303030303030304	0.0	A:61:C:0:G:2:T:0:N:0:O:3	A:197:C:0:G:0:T:0:N:0:O:0	2,35,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20714	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	197	28	20	0.02564102564102564	0.0	A:2:C:0:G:74:T:0:N:0:O:2	A:0:C:0:G:197:T:0:N:0:O:0	2,43,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	197	28	20	0.030303030303030304	0.0	A:2:C:0:G:64:T:0:N:0:O:0	A:0:C:0:G:196:T:1:N:0:O:0	2,46,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	197	28	20	0.023255813953488372	0.0	A:0:C:73:G:0:T:2:N:0:O:11	A:0:C:197:G:0:T:0:N:0:O:0	2,66,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	169	391	28	20	0.023668639053254437	0.0	A:163:C:0:G:4:T:0:N:0:O:2	A:391:C:0:G:0:T:0:N:0:O:0	4,62,0,107	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	197	28	20	0.02040816326530612	0.0	A:91:C:0:G:2:T:0:N:0:O:5	A:197:C:0:G:0:T:0:N:0:O:0	2,23,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	61	197	28	20	0.04918032786885246	0.0	A:0:C:0:G:3:T:57:N:0:O:1	A:0:C:0:G:0:T:197:N:0:O:0	3,11,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	83	28	20	0.10112359550561797	0.012048192771084338	A:0:C:0:G:72:T:9:N:0:O:8	A:0:C:0:G:82:T:1:N:0:O:0	0,63,9,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	83	28	20	0.02666666666666667	0.0	A:2:C:0:G:72:T:0:N:0:O:1	A:0:C:0:G:83:T:0:N:0:O:0	0,56,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21219	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	176	28	20	0.023809523809523808	0.0	A:0:C:78:G:0:T:2:N:0:O:4	A:0:C:176:G:0:T:0:N:0:O:0	0,43,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	151	28	20	0.03896103896103896	0.0	A:0:C:73:G:0:T:3:N:0:O:1	A:0:C:151:G:0:T:0:N:0:O:0	0,51,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21433	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	197	28	20	0.02040816326530612	0.0	A:2:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	1,46,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	197	28	20	0.020618556701030927	0.0	A:95:C:0:G:0:T:2:N:0:O:0	A:197:C:0:G:0:T:0:N:0:O:0	2,33,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	197	28	20	0.024691358024691357	0.0	A:2:C:0:G:78:T:0:N:0:O:1	A:0:C:0:G:197:T:0:N:0:O:0	2,12,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	196	28	20	0.017857142857142856	0.0	A:1:C:2:G:0:T:93:N:0:O:16	A:0:C:0:G:0:T:195:N:0:O:1	0,78,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	196	28	20	0.02127659574468085	0.0	A:0:C:90:G:0:T:2:N:0:O:2	A:0:C:196:G:0:T:0:N:0:O:0	1,21,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	196	28	20	0.04040404040404041	0.0	A:0:C:90:G:0:T:4:N:0:O:5	A:1:C:195:G:0:T:0:N:0:O:0	1,82,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	196	28	20	0.03125	0.0	A:0:C:3:G:0:T:90:N:0:O:3	A:0:C:0:G:0:T:196:N:0:O:0	0,76,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	196	28	20	0.022222222222222223	0.0	A:3:C:0:G:127:T:0:N:0:O:5	A:0:C:0:G:196:T:0:N:0:O:0	3,52,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	195	28	20	0.030303030303030304	0.0	A:0:C:0:G:4:T:127:N:0:O:1	A:0:C:0:G:0:T:195:N:0:O:0	4,53,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	200	28	20	0.03954802259887006	0.005	A:0:C:149:G:0:T:7:N:0:O:21	A:0:C:198:G:0:T:1:N:0:O:1	2,148,5,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	198	28	20	0.031746031746031744	0.0	A:0:C:4:G:0:T:122:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	2,115,2,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	199	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:93:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	0,70,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	139	199	28	20	0.9280575539568345	1.0	A:0:C:0:G:129:T:0:N:0:O:10	A:0:C:0:G:199:T:0:N:0:O:0	78,88,51,51	70.0	1784.3	yes	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	23533	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	200	28	20	0.03125	0.0	A:0:C:55:G:0:T:2:N:0:O:7	A:0:C:200:G:0:T:0:N:0:O:0	2,33,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	193	28	20	0.047619047619047616	0.0	A:4:C:0:G:70:T:0:N:0:O:10	A:0:C:0:G:190:T:1:N:0:O:2	4,54,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	200	28	20	0.023622047244094488	0.0	A:3:C:0:G:124:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	3,92,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	198	28	20	0.10377358490566038	0.0	A:0:C:95:G:0:T:11:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,82,11,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23962	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	198	28	20	0.023255813953488372	0.0	A:3:C:0:G:0:T:126:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	2,47,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	198	28	20	0.02	0.0	A:146:C:0:G:0:T:3:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	3,71,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23964	A	T	A	16	ignore low frequency variant	Pass	False	False	True	200	199	28	20	0.015	0.0	A:142:C:0:G:0:T:3:N:0:O:55	A:198:C:0:G:0:T:0:N:0:O:1	2,116,1,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	197	28	20	0.05	0.0	A:4:C:0:G:0:T:76:N:0:O:0	A:0:C:0:G:0:T:197:N:0:O:0	3,25,1,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	198	28	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	2,25,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	198	28	20	0.02631578947368421	0.0	A:3:C:104:G:0:T:0:N:0:O:7	A:0:C:198:G:0:T:0:N:0:O:0	3,41,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	198	28	20	0.022222222222222223	0.0	A:0:C:88:G:0:T:2:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	0,71,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24237	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	199	28	20	0.036585365853658534	0.0	A:1:C:76:G:0:T:3:N:0:O:2	A:0:C:199:G:0:T:0:N:0:O:0	0,38,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24243	T	G	T	16	ignore low frequency variant	Pass	False	False	True	55	198	28	20	0.01818181818181818	0.0	A:0:C:0:G:1:T:49:N:0:O:5	A:0:C:0:G:0:T:198:N:0:O:0	0,44,1,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	57	199	28	20	0.017543859649122806	0.0	A:45:C:0:G:1:T:0:N:0:O:11	A:199:C:0:G:0:T:0:N:0:O:0	0,37,1,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	199	28	20	0.04838709677419355	0.0	A:0:C:50:G:0:T:3:N:0:O:9	A:0:C:199:G:0:T:0:N:0:O:0	0,50,3,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	199	28	20	0.019417475728155338	0.0	A:2:C:0:G:98:T:0:N:0:O:3	A:0:C:1:G:198:T:0:N:0:O:0	2,16,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24278	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	199	28	20	0.023809523809523808	0.0	A:2:C:0:G:1:T:81:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	2,10,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	199	28	20	0.0392156862745098	0.0	A:0:C:4:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:199:N:0:O:0	4,15,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	200	28	20	0.020833333333333332	0.005	A:45:C:0:G:1:T:0:N:0:O:2	A:199:C:0:G:1:T:0:N:0:O:0	0,4,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	200	28	20	0.023255813953488372	0.0	A:0:C:78:G:0:T:2:N:0:O:6	A:2:C:198:G:0:T:0:N:0:O:0	0,78,2,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	196	28	20	0.022222222222222223	0.0	A:88:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,44,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24781	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	196	28	20	0.03225806451612903	0.0	A:2:C:0:G:60:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	2,13,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	24954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	196	28	20	0.023529411764705882	0.0	A:2:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:192:T:4:N:0:O:0	0,56,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25060	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	196	28	20	0.023809523809523808	0.0	A:80:C:0:G:2:T:0:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	2,37,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	25104	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	195	28	20	0.021739130434782608	0.0	A:45:C:0:G:0:T:1:N:0:O:0	A:195:C:0:G:0:T:0:N:0:O:0	0,21,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	200	28	20	0.02654867256637168	0.0	A:110:C:0:G:0:T:3:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:0	3,44,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	200	28	20	0.02040816326530612	0.0	A:2:C:0:G:92:T:2:N:0:O:2	A:0:C:0:G:200:T:0:N:0:O:0	0,31,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	113	199	28	20	1.0	1.0	A:0:C:0:G:0:T:113:N:0:O:0	A:0:C:0:G:0:T:199:N:0:O:0	35,35,78,78	420.0	1982.3	yes	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	25611	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	200	28	20	0.022727272727272728	0.0	A:0:C:85:G:0:T:2:N:0:O:1	A:1:C:199:G:0:T:0:N:0:O:0	1,51,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25699	G	C	G	16	ignore low frequency variant	Pass	False	False	True	110	198	28	20	0.01818181818181818	0.0	A:0:C:2:G:95:T:0:N:0:O:13	A:0:C:0:G:198:T:0:N:0:O:0	2,44,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	78	198	28	20	0.02564102564102564	0.0	A:0:C:2:G:76:T:0:N:0:O:0	A:0:C:0:G:198:T:0:N:0:O:0	2,19,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	198	28	20	0.021052631578947368	0.0	A:1:C:85:G:0:T:2:N:0:O:7	A:0:C:198:G:0:T:0:N:0:O:0	2,51,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	198	28	20	0.0625	0.0	A:44:C:3:G:0:T:0:N:0:O:1	A:198:C:0:G:0:T:0:N:0:O:0	0,21,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	74	198	28	20	0.05405405405405406	0.0	A:68:C:0:G:0:T:4:N:0:O:2	A:198:C:0:G:0:T:0:N:0:O:0	0,49,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	66	198	28	20	0.030303030303030304	0.0	A:0:C:2:G:0:T:64:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	0,41,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	89	198	28	20	0.02247191011235955	0.0	A:2:C:0:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	2,34,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	198	28	20	0.03409090909090909	0.0	A:0:C:85:G:0:T:3:N:0:O:0	A:0:C:198:G:0:T:0:N:0:O:0	1,39,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	193	28	20	0.03125	0.0	A:0:C:92:G:0:T:3:N:0:O:1	A:0:C:193:G:0:T:0:N:0:O:0	0,68,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	193	28	20	0.015748031496062992	0.0	A:0:C:92:G:0:T:2:N:0:O:33	A:0:C:193:G:0:T:0:N:0:O:0	0,108,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	26526	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	193	28	20	0.02247191011235955	0.0	A:1:C:0:G:86:T:2:N:0:O:0	A:1:C:0:G:192:T:0:N:0:O:0	0,50,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	26527	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	193	28	20	0.02127659574468085	0.0	A:2:C:90:G:0:T:0:N:0:O:2	A:0:C:193:G:0:T:0:N:0:O:0	0,56,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	193	28	20	0.022988505747126436	0.0	A:2:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:191:T:2:N:0:O:0	2,28,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	164	393	28	20	0.03048780487804878	0.0	A:0:C:158:G:0:T:5:N:0:O:1	A:0:C:393:G:0:T:0:N:0:O:0	0,145,5,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	205	393	28	20	0.04390243902439024	0.0	A:0:C:9:G:0:T:196:N:0:O:0	A:0:C:0:G:0:T:393:N:0:O:0	0,152,9,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	199	28	20	0.038461538461538464	0.0	A:98:C:0:G:4:T:0:N:0:O:2	A:199:C:0:G:0:T:0:N:0:O:0	4,47,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	200	28	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	0,63,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	200	28	20	0.05555555555555555	0.0	A:84:C:0:G:0:T:5:N:0:O:1	A:200:C:0:G:0:T:0:N:0:O:0	5,23,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	200	28	20	0.05714285714285714	0.0	A:4:C:0:G:66:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	4,5,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	200	28	20	0.0392156862745098	0.0	A:0:C:96:G:0:T:4:N:0:O:2	A:0:C:200:G:0:T:0:N:0:O:0	0,63,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	94	196	28	20	0.02127659574468085	0.0	A:1:C:2:G:91:T:0:N:0:O:0	A:0:C:0:G:194:T:2:N:0:O:0	2,26,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	196	28	20	0.020833333333333332	0.01020408163265306	A:84:C:0:G:2:T:0:N:0:O:10	A:194:C:0:G:2:T:0:N:0:O:0	2,29,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27007	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	196	28	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,35,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27065	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	196	28	20	0.02654867256637168	0.00510204081632653	A:0:C:0:G:110:T:3:N:0:O:0	A:0:C:0:G:195:T:1:N:0:O:0	1,52,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	196	28	20	0.039603960396039604	0.0	A:97:C:0:G:4:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	4,26,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	196	28	20	0.023529411764705882	0.00510204081632653	A:2:C:0:G:82:T:0:N:0:O:1	A:1:C:0:G:195:T:0:N:0:O:0	2,21,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	196	28	20	0.10714285714285714	0.0	A:0:C:75:G:0:T:9:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,59,9,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27109	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	196	28	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	2,53,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27367	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	195	28	20	0.023809523809523808	0.0	A:3:C:120:G:0:T:0:N:0:O:3	A:0:C:195:G:0:T:0:N:0:O:0	0,54,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27406	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	195	28	20	0.020618556701030927	0.0	A:0:C:77:G:0:T:2:N:0:O:18	A:1:C:194:G:0:T:0:N:0:O:0	0,77,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	195	28	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:194:T:1:N:0:O:0	2,20,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27614	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	196	28	20	0.030927835051546393	0.0	A:0:C:3:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	0,59,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	196	28	20	0.023529411764705882	0.0	A:82:C:0:G:2:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	2,32,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	197	28	20	0.02247191011235955	0.01015228426395939	A:2:C:85:G:0:T:0:N:0:O:2	A:2:C:195:G:0:T:0:N:0:O:0	2,44,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	197	28	20	0.03896103896103896	0.0	A:3:C:0:G:69:T:0:N:0:O:5	A:0:C:0:G:197:T:0:N:0:O:0	3,13,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	28551	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	232	28	20	0.027777777777777776	0.0	A:3:C:0:G:104:T:0:N:0:O:1	A:0:C:0:G:232:T:0:N:0:O:0	3,49,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	232	28	20	0.03125	0.0	A:3:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:232:T:0:N:0:O:0	3,44,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	144	193	28	20	0.020833333333333332	0.0	A:3:C:101:G:0:T:0:N:0:O:40	A:0:C:190:G:0:T:1:N:0:O:2	3,88,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	28699	A	C	A	16	ignore low frequency variant	Pass	False	False	True	83	189	28	20	0.024096385542168676	0.0	A:81:C:2:G:0:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	2,40,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	276	28	20	0.02247191011235955	0.0	A:0:C:85:G:0:T:2:N:0:O:2	A:0:C:276:G:0:T:0:N:0:O:0	0,31,2,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	278	28	20	0.030303030303030304	0.0035971223021582736	A:3:C:0:G:94:T:0:N:0:O:2	A:1:C:0:G:276:T:1:N:0:O:0	3,5,0,94	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	278	28	20	0.023529411764705882	0.0	A:0:C:83:G:0:T:2:N:0:O:0	A:0:C:278:G:0:T:0:N:0:O:0	0,30,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	378	28	20	0.04411764705882353	0.0	A:0:C:129:G:0:T:6:N:0:O:1	A:0:C:378:G:0:T:0:N:0:O:0	0,106,6,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	79	197	28	20	0.02531645569620253	0.0	A:0:C:2:G:77:T:0:N:0:O:0	A:0:C:0:G:197:T:0:N:0:O:0	2,36,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	195	28	20	0.0625	0.0	A:44:C:0:G:3:T:0:N:0:O:1	A:195:C:0:G:0:T:0:N:0:O:0	0,1,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	29410	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	198	28	20	0.021505376344086023	0.0	A:2:C:0:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:198:N:0:O:0	2,55,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	29652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	250	195	28	20	0.02	0.0	A:5:C:0:G:0:T:245:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	0,108,5,142	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00043	artic-pipeline	NB09	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	294	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00043	artic-pipeline	NB09	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	53	159	28	20	0.018867924528301886	0.0	A:1:C:0:G:0:T:48:N:0:O:4	A:0:C:0:G:0:T:159:N:0:O:0	0,15,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	160	28	20	0.02564102564102564	0.0	A:0:C:38:G:0:T:1:N:0:O:0	A:1:C:159:G:0:T:0:N:0:O:0	0,11,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	136	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	164	28	20	0.02	0.006097560975609756	A:49:C:0:G:0:T:1:N:0:O:0	A:163:C:0:G:0:T:1:N:0:O:0	0,11,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	165	28	20	0.022727272727272728	0.0	A:0:C:1:G:0:T:43:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	0,9,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	180	C	T	C	1	near depth threshold	Alarm	False	False	True	29	166	28	20	0.034482758620689655	0.0	A:0:C:28:G:0:T:1:N:0:O:0	A:2:C:164:G:0:T:0:N:0:O:0	0,12,1,17	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	164	28	20	0.024390243902439025	0.0	A:0:C:1:G:0:T:40:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,10,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	161	28	20	0.025	0.0	A:1:C:38:G:0:T:1:N:0:O:0	A:1:C:160:G:0:T:0:N:0:O:0	0,9,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	222	C	G	C	16	ignore low frequency variant	Pass	False	False	True	46	161	28	20	0.021739130434782608	0.0	A:0:C:44:G:1:T:0:N:0:O:1	A:3:C:158:G:0:T:0:N:0:O:0	0,9,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	224	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	161	28	20	0.023255813953488372	0.0	A:0:C:1:G:0:T:42:N:0:O:0	A:0:C:0:G:0:T:161:N:0:O:0	0,4,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	233	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	160	28	20	0.023255813953488372	0.0	A:0:C:40:G:0:T:1:N:0:O:2	A:1:C:159:G:0:T:0:N:0:O:0	0,13,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	234	T	A	T	16	ignore low frequency variant	Pass	False	False	True	44	160	28	20	0.022727272727272728	0.0	A:1:C:0:G:0:T:43:N:0:O:0	A:0:C:0:G:0:T:160:N:0:O:0	0,11,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	159	28	20	0.023809523809523808	0.0	A:40:C:0:G:1:T:0:N:0:O:1	A:159:C:0:G:0:T:0:N:0:O:0	0,7,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	238	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	159	28	20	0.02702702702702703	0.0	A:0:C:1:G:0:T:35:N:0:O:1	A:0:C:0:G:0:T:159:N:0:O:0	0,11,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	46	159	28	20	1.0	1.0	A:0:C:0:G:0:T:46:N:0:O:0	A:0:C:0:G:0:T:159:N:0:O:0	10,10,36,36	348.474	1312.6	yes	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	277	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	159	28	20	0.021739130434782608	0.0	A:0:C:1:G:0:T:44:N:0:O:1	A:0:C:0:G:0:T:159:N:0:O:0	0,12,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	278	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	159	28	20	0.02040816326530612	0.0	A:1:C:0:G:47:T:0:N:0:O:1	A:0:C:0:G:159:T:0:N:0:O:0	0,12,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	279	T	A	T	16	ignore low frequency variant	Pass	False	False	True	52	159	28	20	0.019230769230769232	0.0	A:1:C:0:G:0:T:47:N:0:O:4	A:0:C:0:G:0:T:159:N:0:O:0	0,15,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	159	28	20	0.023255813953488372	0.0	A:1:C:0:G:42:T:0:N:0:O:0	A:0:C:0:G:158:T:1:N:0:O:0	1,9,0,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	159	28	20	0.023809523809523808	0.0	A:41:C:0:G:1:T:0:N:0:O:0	A:159:C:0:G:0:T:0:N:0:O:0	1,10,0,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	304	C	T	C	1	near depth threshold	Alarm	False	False	True	33	159	28	20	0.06060606060606061	0.0	A:0:C:31:G:0:T:2:N:0:O:0	A:0:C:159:G:0:T:0:N:0:O:0	0,5,2,28	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	182	28	20	0.021739130434782608	0.005494505494505495	A:0:C:2:G:0:T:83:N:0:O:7	A:0:C:1:G:0:T:181:N:0:O:0	2,23,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	182	28	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:88:N:0:O:6	A:0:C:0:G:0:T:182:N:0:O:0	2,25,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	128	28	20	0.043010752688172046	0.0	A:0:C:87:G:1:T:4:N:0:O:1	A:0:C:128:G:0:T:0:N:0:O:0	0,57,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	128	28	20	0.044444444444444446	0.0	A:0:C:85:G:0:T:4:N:0:O:1	A:0:C:128:G:0:T:0:N:0:O:0	0,50,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	849	G	C	G	16	ignore low frequency variant	Pass	False	False	True	136	128	28	20	0.03676470588235294	0.0	A:0:C:5:G:129:T:0:N:0:O:2	A:0:C:0:G:128:T:0:N:0:O:0	0,66,5,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	850	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	128	28	20	0.03875968992248062	0.0	A:5:C:124:G:0:T:0:N:0:O:0	A:0:C:128:G:0:T:0:N:0:O:0	0,64,5,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	166	28	20	0.023076923076923078	0.0	A:3:C:122:G:0:T:0:N:0:O:5	A:0:C:166:G:0:T:0:N:0:O:0	3,65,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	166	28	20	0.022556390977443608	0.0	A:121:C:0:G:0:T:3:N:0:O:9	A:166:C:0:G:0:T:0:N:0:O:0	3,72,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1124	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	166	28	20	0.029411764705882353	0.0	A:98:C:0:G:3:T:0:N:0:O:1	A:166:C:0:G:0:T:0:N:0:O:0	3,51,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	166	28	20	0.050505050505050504	0.0	A:5:C:0:G:72:T:0:N:0:O:22	A:0:C:0:G:166:T:0:N:0:O:0	2,13,3,86	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	166	28	20	0.024096385542168676	0.0	A:81:C:0:G:2:T:0:N:0:O:0	A:166:C:0:G:0:T:0:N:0:O:0	0,42,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	182	28	20	0.02040816326530612	0.0	A:2:C:0:G:94:T:0:N:0:O:2	A:0:C:0:G:180:T:2:N:0:O:0	2,20,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	291	28	20	0.04424778761061947	0.0	A:0:C:106:G:0:T:5:N:0:O:2	A:2:C:289:G:0:T:0:N:0:O:0	0,54,5,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	190	28	20	0.03278688524590164	0.0	A:0:C:4:G:0:T:117:N:0:O:1	A:0:C:0:G:0:T:190:N:0:O:0	0,56,4,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	177	28	20	0.02702702702702703	0.0	A:0:C:2:G:0:T:69:N:0:O:3	A:0:C:0:G:0:T:177:N:0:O:0	0,41,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	177	28	20	0.02631578947368421	0.0	A:3:C:80:G:0:T:1:N:0:O:30	A:0:C:177:G:0:T:0:N:0:O:0	1,45,2,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	177	28	20	0.02197802197802198	0.03389830508474576	A:1:C:0:G:86:T:2:N:0:O:2	A:0:C:0:G:171:T:6:N:0:O:0	0,42,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	177	28	20	0.02912621359223301	0.0	A:0:C:3:G:0:T:100:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,44,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	177	28	20	0.056338028169014086	0.0	A:67:C:0:G:4:T:0:N:0:O:0	A:176:C:0:G:0:T:1:N:0:O:0	0,5,4,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	177	28	20	0.03676470588235294	0.0	A:5:C:0:G:119:T:0:N:0:O:12	A:0:C:0:G:176:T:1:N:0:O:0	1,51,4,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	177	28	20	0.028037383177570093	0.0	A:104:C:0:G:3:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	0,38,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	177	28	20	0.02564102564102564	0.0	A:38:C:0:G:1:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	1,1,0,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	168	28	20	0.022988505747126436	0.0	A:85:C:2:G:0:T:0:N:0:O:0	A:168:C:0:G:0:T:0:N:0:O:0	0,49,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	168	28	20	0.056818181818181816	0.0	A:5:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:168:T:0:N:0:O:0	5,25,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	2235	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	344	28	20	0.02877697841726619	0.0	A:4:C:0:G:132:T:2:N:0:O:1	A:0:C:0:G:344:T:0:N:0:O:0	3,71,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	2303	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	188	28	20	0.021739130434782608	0.0	A:83:C:0:G:0:T:2:N:0:O:7	A:187:C:0:G:1:T:0:N:0:O:0	0,57,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	2304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	188	28	20	0.02247191011235955	0.0	A:80:C:0:G:0:T:2:N:0:O:7	A:188:C:0:G:0:T:0:N:0:O:0	0,57,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	175	28	20	0.03260869565217391	0.0	A:0:C:89:G:0:T:3:N:0:O:0	A:1:C:174:G:0:T:0:N:0:O:0	0,80,3,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	128	148	28	20	0.65625	1.0	A:0:C:0:G:0:T:84:N:0:O:44	A:0:C:0:G:0:T:148:N:0:O:0	44,88,40,40	54.323	1462.7	yes	.	.	.	mixed position	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	139	28	20	0.02	0.0	A:97:C:2:G:1:T:0:N:0:O:0	A:139:C:0:G:0:T:0:N:0:O:0	0,58,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	110	140	28	20	0.03636363636363636	0.0	A:4:C:1:G:0:T:102:N:0:O:3	A:0:C:0:G:0:T:140:N:0:O:0	0,64,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	140	28	20	0.045454545454545456	0.0	A:42:C:0:G:0:T:2:N:0:O:0	A:140:C:0:G:0:T:0:N:0:O:0	2,23,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	140	28	20	0.033707865168539325	0.0	A:3:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:139:T:1:N:0:O:0	3,27,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	129	28	20	0.042105263157894736	0.0	A:0:C:0:G:4:T:73:N:0:O:18	A:0:C:0:G:0:T:129:N:0:O:0	1,63,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	132	28	20	0.01904761904761905	0.0	A:0:C:0:G:93:T:2:N:0:O:10	A:0:C:0:G:132:T:0:N:0:O:0	2,66,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	132	28	20	0.05154639175257732	0.0	A:5:C:0:G:89:T:0:N:0:O:3	A:0:C:0:G:131:T:1:N:0:O:0	1,61,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	125	132	28	20	0.024	0.0	A:3:C:0:G:0:T:114:N:0:O:8	A:0:C:0:G:0:T:132:N:0:O:0	3,75,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	132	28	20	0.03260869565217391	0.0	A:0:C:89:G:0:T:3:N:0:O:0	A:0:C:132:G:0:T:0:N:0:O:0	0,80,3,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	132	28	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:114:N:0:O:1	A:0:C:0:G:0:T:132:N:0:O:0	0,79,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	138	28	20	0.022222222222222223	0.0	A:87:C:1:G:2:T:0:N:0:O:0	A:138:C:0:G:0:T:0:N:0:O:0	2,32,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4217	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	138	28	20	0.020618556701030927	0.0	A:95:C:0:G:0:T:2:N:0:O:0	A:138:C:0:G:0:T:0:N:0:O:0	2,37,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	137	138	28	20	0.021897810218978103	0.0	A:3:C:0:G:0:T:103:N:0:O:31	A:0:C:0:G:0:T:138:N:0:O:0	0,78,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4316	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	138	28	20	0.021505376344086023	0.0	A:91:C:0:G:2:T:0:N:0:O:0	A:138:C:0:G:0:T:0:N:0:O:0	2,31,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	174	283	28	20	0.034482758620689655	0.014134275618374558	A:0:C:0:G:162:T:6:N:0:O:6	A:0:C:0:G:279:T:4:N:0:O:0	0,127,6,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	138	283	28	20	0.021739130434782608	0.01060070671378092	A:0:C:0:G:125:T:3:N:0:O:10	A:0:C:0:G:280:T:3:N:0:O:0	0,126,3,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	217	283	28	20	0.018433179723502304	0.0	A:0:C:193:G:0:T:4:N:0:O:20	A:0:C:283:G:0:T:0:N:0:O:0	0,124,4,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	146	28	20	0.050505050505050504	0.0	A:85:C:0:G:0:T:5:N:0:O:9	A:146:C:0:G:0:T:0:N:0:O:0	0,48,5,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4642	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	143	28	20	0.02702702702702703	0.006993006993006993	A:0:C:0:G:108:T:3:N:0:O:0	A:0:C:0:G:142:T:1:N:0:O:0	0,61,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	4736	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	149	28	20	0.021897810218978103	0.013422818791946308	A:132:C:0:G:3:T:0:N:0:O:2	A:147:C:0:G:2:T:0:N:0:O:0	3,82,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	102	150	28	20	0.029411764705882353	0.0	A:99:C:3:G:0:T:0:N:0:O:0	A:150:C:0:G:0:T:0:N:0:O:0	2,37,1,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	5532	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	150	28	20	0.02830188679245283	0.0	A:3:C:0:G:102:T:0:N:0:O:1	A:0:C:0:G:147:T:3:N:0:O:0	1,62,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	150	28	20	0.038834951456310676	0.0	A:4:C:0:G:99:T:0:N:0:O:0	A:0:C:0:G:150:T:0:N:0:O:0	4,36,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	161	28	20	0.023529411764705882	0.0	A:0:C:2:G:0:T:82:N:0:O:1	A:0:C:0:G:0:T:161:N:0:O:0	0,69,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	162	28	20	0.061855670103092786	0.0	A:0:C:88:G:0:T:6:N:0:O:3	A:1:C:161:G:0:T:0:N:0:O:0	0,73,6,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6109	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	162	28	20	0.020618556701030927	0.0	A:2:C:0:G:91:T:0:N:0:O:4	A:0:C:0:G:162:T:0:N:0:O:0	2,32,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	161	28	20	0.023255813953488372	0.0	A:0:C:3:G:0:T:108:N:0:O:18	A:0:C:0:G:0:T:161:N:0:O:0	2,67,1,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	111	28	20	0.06451612903225806	0.0	A:0:C:83:G:0:T:6:N:0:O:4	A:0:C:111:G:0:T:0:N:0:O:0	0,54,6,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	183	28	20	0.023076923076923078	0.0	A:125:C:0:G:3:T:0:N:0:O:2	A:183:C:0:G:0:T:0:N:0:O:0	3,57,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	183	28	20	0.027522935779816515	0.0	A:0:C:1:G:3:T:105:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	0,65,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	350	28	20	0.021052631578947368	0.0	A:0:C:175:G:0:T:4:N:0:O:11	A:0:C:350:G:0:T:0:N:0:O:0	0,123,4,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	169	28	20	0.0380952380952381	0.0	A:4:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:168:T:1:N:0:O:0	4,28,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	140	169	28	20	0.02142857142857143	0.0	A:0:C:0:G:135:T:3:N:0:O:2	A:0:C:0:G:169:T:0:N:0:O:0	0,57,3,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	169	28	20	0.08333333333333333	0.0	A:76:C:0:G:0:T:7:N:0:O:1	A:169:C:0:G:0:T:0:N:0:O:0	0,47,7,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	164	28	20	0.03305785123966942	0.0	A:110:C:0:G:4:T:1:N:0:O:6	A:164:C:0:G:0:T:0:N:0:O:0	4,64,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	164	28	20	0.022222222222222223	0.0	A:2:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:162:T:2:N:0:O:0	2,43,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	151	28	20	0.02631578947368421	0.0	A:0:C:74:G:0:T:2:N:0:O:0	A:0:C:151:G:0:T:0:N:0:O:0	1,49,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	151	28	20	0.04878048780487805	0.0	A:4:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:149:T:2:N:0:O:0	4,25,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	7488	C	A	C	3	illumina variant callers disagree	Alarm	False	False	True	114	151	28	20	0.15789473684210525	0.18543046357615894	A:18:C:96:G:0:T:0:N:0:O:0	A:28:C:123:G:0:T:0:N:0:O:0	8,50,10,64	.	.	maybe	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	164	28	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,58,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	164	28	20	0.038834951456310676	0.0	A:96:C:4:G:0:T:0:N:0:O:3	A:164:C:0:G:0:T:0:N:0:O:0	0,57,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	179	28	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,63,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	168	28	20	0.028169014084507043	0.0	A:0:C:2:G:0:T:69:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	2,27,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	8917	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	268	28	20	0.02072538860103627	0.0	A:0:C:184:G:0:T:4:N:0:O:5	A:2:C:266:G:0:T:0:N:0:O:0	0,125,4,68	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	125	28	20	0.044642857142857144	0.0	A:5:C:0:G:0:T:97:N:0:O:10	A:0:C:0:G:0:T:125:N:0:O:0	5,37,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9172	T	C	C	17	accept high frequency variant	Pass	False	True	True	122	125	28	20	0.9590163934426229	0.984	A:0:C:117:G:1:T:0:N:0:O:4	A:2:C:123:G:0:T:0:N:0:O:0	44,48,73,74	559.237	2084.4	yes	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	126	125	28	20	0.031746031746031744	0.0	A:0:C:0:G:4:T:117:N:0:O:5	A:0:C:0:G:0:T:125:N:0:O:0	0,48,4,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9388	G	T	N	2	allele in negative control	Alarm	False	False	False	130	127	28	20	0.023076923076923078	0.007874015748031496	A:0:C:0:G:127:T:3:N:0:O:0	A:0:C:0:G:126:T:1:N:0:O:0	0,72,3,58	.	.	no	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	262	28	20	0.03614457831325301	0.0	A:0:C:158:G:0:T:6:N:0:O:2	A:0:C:262:G:0:T:0:N:0:O:0	0,141,6,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	136	28	20	0.023255813953488372	0.0	A:0:C:93:G:0:T:3:N:0:O:33	A:0:C:135:G:0:T:0:N:0:O:1	3,123,0,6	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	134	28	20	0.03225806451612903	0.0	A:0:C:2:G:0:T:60:N:0:O:0	A:0:C:0:G:0:T:134:N:0:O:0	2,61,0,1	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9816	T	G	T	16	ignore low frequency variant	Pass	False	False	True	135	304	28	20	0.022222222222222223	0.0	A:0:C:0:G:3:T:131:N:0:O:1	A:0:C:0:G:0:T:304:N:0:O:0	0,73,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	173	28	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	2,30,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	9951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	173	28	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:0:C:173:G:0:T:0:N:0:O:0	0,71,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	173	28	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:94:N:0:O:5	A:0:C:0:G:0:T:173:N:0:O:0	0,69,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	122	134	28	20	0.03278688524590164	0.0	A:4:C:0:G:0:T:117:N:0:O:1	A:0:C:0:G:0:T:134:N:0:O:0	0,63,4,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10190	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	134	28	20	0.02586206896551724	0.0	A:0:C:3:G:0:T:111:N:0:O:2	A:0:C:0:G:0:T:134:N:0:O:0	0,70,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	134	28	20	0.02	0.0	A:2:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:134:T:0:N:0:O:0	2,22,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	161	28	20	0.0196078431372549	0.018633540372670808	A:0:C:97:G:0:T:2:N:0:O:3	A:0:C:158:G:0:T:3:N:0:O:0	0,41,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	161	28	20	0.0297029702970297	0.0	A:97:C:0:G:3:T:0:N:0:O:1	A:161:C:0:G:0:T:0:N:0:O:0	3,26,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	206	315	28	20	0.02912621359223301	0.0	A:0:C:6:G:0:T:198:N:0:O:2	A:0:C:0:G:0:T:315:N:0:O:0	0,121,6,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	171	28	20	0.03260869565217391	0.0	A:0:C:3:G:0:T:83:N:0:O:6	A:0:C:0:G:0:T:171:N:0:O:0	0,50,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	171	28	20	0.030612244897959183	0.0	A:1:C:92:G:0:T:3:N:0:O:2	A:2:C:169:G:0:T:0:N:0:O:0	0,57,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	171	28	20	0.03361344537815126	0.0	A:0:C:0:G:4:T:111:N:0:O:4	A:0:C:0:G:0:T:171:N:0:O:0	0,53,4,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10948	A	G	G	13	new position validated by illumina	Pass	False	True	True	119	171	28	20	0.8739495798319328	1.0	A:3:C:0:G:104:T:1:N:0:O:11	A:0:C:0:G:171:T:0:N:0:O:0	48,61,56,58	280.0	1319.3	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	171	28	20	0.018691588785046728	0.011695906432748537	A:2:C:97:G:0:T:0:N:0:O:8	A:2:C:169:G:0:T:0:N:0:O:0	2,43,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	11081	T	G	T	1	near depth threshold	Alarm	False	False	True	30	137	28	20	0.03333333333333333	0.0	A:0:C:0:G:1:T:29:N:0:O:0	A:0:C:0:G:0:T:137:N:0:O:0	0,5,1,25	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	159	28	20	0.025423728813559324	0.0	A:113:C:0:G:0:T:3:N:0:O:2	A:158:C:0:G:0:T:0:N:0:O:1	3,77,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	145	28	20	0.07142857142857142	0.0	A:0:C:91:G:0:T:7:N:0:O:0	A:2:C:143:G:0:T:0:N:0:O:0	0,74,7,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	203	109	28	20	0.019704433497536946	0.0	A:0:C:0:G:131:T:4:N:0:O:68	A:0:C:0:G:108:T:0:N:0:O:1	0,78,4,125	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	107	28	20	0.057971014492753624	0.0	A:65:C:0:G:4:T:0:N:0:O:0	A:107:C:0:G:0:T:0:N:0:O:0	0,47,4,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	109	28	20	0.016666666666666666	0.0	A:0:C:88:G:0:T:2:N:0:O:30	A:0:C:108:G:0:T:0:N:0:O:1	0,92,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	211	28	20	0.020134228187919462	0.0	A:3:C:0:G:146:T:0:N:0:O:0	A:0:C:0:G:211:T:0:N:0:O:0	3,36,0,113	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	105	28	20	0.020202020202020204	0.0	A:97:C:2:G:0:T:0:N:0:O:0	A:105:C:0:G:0:T:0:N:0:O:0	2,51,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	12337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	105	28	20	0.02631578947368421	0.0	A:74:C:0:G:2:T:0:N:0:O:0	A:105:C:0:G:0:T:0:N:0:O:0	1,40,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	114	28	20	0.04938271604938271	0.0	A:0:C:76:G:0:T:4:N:0:O:1	A:0:C:114:G:0:T:0:N:0:O:0	0,61,4,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	103	28	20	0.018867924528301886	0.0	A:98:C:0:G:2:T:0:N:0:O:6	A:103:C:0:G:0:T:0:N:0:O:0	2,42,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	118	28	20	0.024539877300613498	0.0	A:4:C:0:G:159:T:0:N:0:O:0	A:0:C:0:G:118:T:0:N:0:O:0	3,76,1,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13124	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	118	28	20	0.019801980198019802	0.00847457627118644	A:0:C:0:G:98:T:2:N:0:O:1	A:0:C:0:G:117:T:1:N:0:O:0	1,42,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	118	28	20	0.01910828025477707	0.0	A:0:C:146:G:1:T:3:N:0:O:7	A:1:C:117:G:0:T:0:N:0:O:0	0,92,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	168	28	20	0.125	0.0	A:0:C:70:G:0:T:10:N:0:O:0	A:0:C:168:G:0:T:0:N:0:O:0	0,68,10,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	168	28	20	0.020833333333333332	0.0	A:2:C:0:G:87:T:0:N:0:O:7	A:0:C:0:G:168:T:0:N:0:O:0	2,32,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	168	28	20	0.03076923076923077	0.0	A:0:C:63:G:0:T:2:N:0:O:0	A:1:C:167:G:0:T:0:N:0:O:0	0,47,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	167	28	20	0.049019607843137254	0.005988023952095809	A:5:C:91:G:0:T:0:N:0:O:6	A:1:C:166:G:0:T:0:N:0:O:0	5,45,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	166	28	20	0.017543859649122806	0.0	A:2:C:0:G:95:T:0:N:0:O:17	A:0:C:0:G:166:T:0:N:0:O:0	2,47,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	171	28	20	0.023255813953488372	0.0	A:3:C:0:G:119:T:0:N:0:O:7	A:0:C:0:G:171:T:0:N:0:O:0	3,31,0,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	171	28	20	0.029411764705882353	0.0	A:4:C:0:G:132:T:0:N:0:O:0	A:0:C:0:G:170:T:1:N:0:O:0	4,48,0,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	171	28	20	0.03225806451612903	0.0	A:56:C:0:G:2:T:0:N:0:O:4	A:171:C:0:G:0:T:0:N:0:O:0	0,6,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	172	28	20	0.041666666666666664	0.0	A:0:C:86:G:0:T:4:N:0:O:6	A:0:C:172:G:0:T:0:N:0:O:0	0,77,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	14287	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	172	28	20	0.037037037037037035	0.0	A:0:C:3:G:0:T:78:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	0,70,3,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	172	28	20	0.022900763358778626	0.0	A:0:C:126:G:0:T:3:N:0:O:2	A:0:C:172:G:0:T:0:N:0:O:0	0,67,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	172	28	20	0.022727272727272728	0.0	A:0:C:84:G:0:T:2:N:0:O:2	A:1:C:171:G:0:T:0:N:0:O:0	0,71,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	98	172	28	20	0.9795918367346939	0.9941860465116279	A:0:C:0:G:0:T:96:N:0:O:2	A:0:C:0:G:0:T:171:N:0:O:1	54,56,42,42	326.505	1405.8	yes	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	166	28	20	0.027522935779816515	0.006024096385542169	A:0:C:106:G:0:T:3:N:0:O:0	A:0:C:165:G:0:T:1:N:0:O:0	0,81,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	166	28	20	0.03773584905660377	0.0	A:4:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:165:T:1:N:0:O:0	4,57,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	176	28	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	2,34,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	176	28	20	0.04672897196261682	0.0	A:5:C:0:G:99:T:0:N:0:O:3	A:0:C:0:G:176:T:0:N:0:O:0	5,34,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	176	28	20	0.028985507246376812	0.0	A:0:C:2:G:0:T:62:N:0:O:5	A:0:C:0:G:0:T:176:N:0:O:0	0,60,2,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	15293	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	128	28	20	0.024390243902439025	0.0	A:116:C:0:G:3:T:0:N:0:O:4	A:128:C:0:G:0:T:0:N:0:O:0	3,76,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	128	28	20	0.0196078431372549	0.0	A:0:C:98:G:0:T:2:N:0:O:2	A:1:C:127:G:0:T:0:N:0:O:0	0,71,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	147	28	20	0.15	0.0	A:0:C:34:G:0:T:6:N:0:O:0	A:1:C:146:G:0:T:0:N:0:O:0	0,23,6,17	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	15998	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	147	28	20	0.02564102564102564	0.0	A:0:C:76:G:0:T:2:N:0:O:0	A:0:C:147:G:0:T:0:N:0:O:0	2,27,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	175	28	20	0.0392156862745098	0.0	A:0:C:98:G:0:T:4:N:0:O:0	A:0:C:175:G:0:T:0:N:0:O:0	0,76,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	175	28	20	0.030927835051546393	0.0	A:92:C:0:G:0:T:3:N:0:O:2	A:175:C:0:G:0:T:0:N:0:O:0	3,56,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	209	28	20	0.023076923076923078	0.0	A:0:C:126:G:0:T:3:N:0:O:1	A:1:C:208:G:0:T:0:N:0:O:0	0,66,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	180	28	20	0.033707865168539325	0.0	A:3:C:0:G:80:T:0:N:0:O:6	A:0:C:0:G:180:T:0:N:0:O:0	3,12,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	179	28	20	0.11224489795918367	0.0	A:0:C:0:G:11:T:82:N:0:O:5	A:0:C:0:G:0:T:179:N:0:O:0	0,47,11,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	180	28	20	0.03333333333333333	0.0	A:5:C:0:G:113:T:1:N:0:O:31	A:0:C:0:G:176:T:4:N:0:O:0	0,56,5,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	180	28	20	0.037037037037037035	0.0	A:78:C:3:G:0:T:0:N:0:O:0	A:180:C:0:G:0:T:0:N:0:O:0	3,31,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	272	28	20	0.02617801047120419	0.0	A:5:C:0:G:182:T:0:N:0:O:4	A:0:C:0:G:269:T:3:N:0:O:0	5,36,0,155	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	115	28	20	0.02702702702702703	0.0	A:2:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:114:T:1:N:0:O:0	2,12,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	115	28	20	0.028037383177570093	0.0	A:104:C:0:G:3:T:0:N:0:O:0	A:115:C:0:G:0:T:0:N:0:O:0	3,49,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	104	28	20	0.02459016393442623	0.0	A:119:C:3:G:0:T:0:N:0:O:0	A:104:C:0:G:0:T:0:N:0:O:0	3,53,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	104	28	20	0.038461538461538464	0.009615384615384616	A:0:C:99:G:0:T:4:N:0:O:1	A:0:C:103:G:0:T:1:N:0:O:0	0,77,4,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	104	28	20	0.0423728813559322	0.0	A:5:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:104:T:0:N:0:O:0	5,40,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17749	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	163	28	20	0.05172413793103448	0.0736196319018405	A:0:C:0:G:110:T:6:N:0:O:0	A:0:C:0:G:151:T:12:N:0:O:0	4,66,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	163	28	20	0.028985507246376812	0.0	A:0:C:66:G:0:T:2:N:0:O:1	A:0:C:163:G:0:T:0:N:0:O:0	0,50,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	163	28	20	0.017391304347826087	0.0	A:98:C:0:G:0:T:2:N:0:O:15	A:163:C:0:G:0:T:0:N:0:O:0	0,52,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	163	28	20	0.08695652173913043	0.0	A:10:C:0:G:104:T:1:N:0:O:0	A:0:C:0:G:163:T:0:N:0:O:0	0,71,10,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	134	123	28	20	0.029850746268656716	0.0	A:4:C:0:G:0:T:111:N:0:O:19	A:0:C:0:G:0:T:122:N:0:O:1	4,60,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	164	28	20	0.028169014084507043	0.0	A:0:C:137:G:0:T:4:N:0:O:1	A:0:C:164:G:0:T:0:N:0:O:0	0,82,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18346	A	G	A	16	ignore low frequency variant	Pass	False	False	True	152	164	28	20	0.019736842105263157	0.0	A:147:C:0:G:3:T:0:N:0:O:2	A:164:C:0:G:0:T:0:N:0:O:0	2,70,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	164	28	20	0.034782608695652174	0.0	A:1:C:0:G:4:T:110:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	3,44,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	165	164	28	20	0.024242424242424242	0.0	A:161:C:0:G:4:T:0:N:0:O:0	A:164:C:0:G:0:T:0:N:0:O:0	3,76,1,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	176	163	28	20	0.022727272727272728	0.0	A:171:C:0:G:0:T:4:N:0:O:1	A:163:C:0:G:0:T:0:N:0:O:0	0,88,4,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18735	A	T	A	1	near depth threshold	Alarm	False	False	True	32	128	28	20	0.03125	0.0	A:30:C:0:G:0:T:1:N:0:O:1	A:128:C:0:G:0:T:0:N:0:O:0	0,10,1,22	.	.	no	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	128	28	20	0.02857142857142857	0.0	A:0:C:0:G:3:T:102:N:0:O:0	A:0:C:0:G:0:T:128:N:0:O:0	3,39,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	172	28	20	0.03870967741935484	0.0	A:6:C:0:G:149:T:0:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	6,33,0,122	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	260	28	20	0.02247191011235955	0.0038461538461538464	A:87:C:0:G:2:T:0:N:0:O:0	A:259:C:0:G:1:T:0:N:0:O:0	2,25,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	257	28	20	0.14285714285714285	0.0	A:0:C:60:G:0:T:10:N:0:O:0	A:0:C:257:G:0:T:0:N:0:O:0	0,50,10,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	19722	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	152	28	20	0.022222222222222223	0.0	A:88:C:0:G:2:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	1,38,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	171	152	28	20	0.029239766081871343	0.0	A:5:C:0:G:0:T:133:N:0:O:33	A:0:C:0:G:0:T:152:N:0:O:0	0,76,5,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	152	28	20	0.038834951456310676	0.0	A:99:C:0:G:0:T:4:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	0,56,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	152	28	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:95:N:0:O:2	A:0:C:0:G:0:T:152:N:0:O:0	0,59,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	183	28	20	0.021739130434782608	0.0	A:0:C:1:G:0:T:45:N:0:O:0	A:0:C:0:G:0:T:183:N:0:O:0	1,28,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	183	28	20	0.027777777777777776	0.0	A:0:C:102:G:0:T:3:N:0:O:3	A:1:C:182:G:0:T:0:N:0:O:0	0,53,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	20394	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	182	28	20	0.031496062992125984	0.0	A:4:C:0:G:0:T:117:N:0:O:6	A:0:C:0:G:0:T:182:N:0:O:0	4,72,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	175	28	20	0.020942408376963352	0.0	A:4:C:0:G:170:T:0:N:0:O:17	A:0:C:0:G:174:T:1:N:0:O:0	4,93,0,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	169	175	28	20	0.029585798816568046	0.0	A:163:C:0:G:5:T:0:N:0:O:1	A:175:C:0:G:0:T:0:N:0:O:0	5,69,0,100	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	165	28	20	0.03508771929824561	0.006060606060606061	A:4:C:0:G:96:T:0:N:0:O:14	A:1:C:0:G:163:T:1:N:0:O:0	1,10,3,104	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	126	28	20	0.09	0.007936507936507936	A:0:C:0:G:81:T:9:N:0:O:10	A:0:C:0:G:125:T:1:N:0:O:0	0,69,9,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	220	28	20	0.022727272727272728	0.0	A:2:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:218:T:2:N:0:O:0	2,30,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	222	28	20	0.03636363636363636	0.0	A:0:C:105:G:0:T:4:N:0:O:1	A:1:C:221:G:0:T:0:N:0:O:0	0,64,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	222	28	20	0.029411764705882353	0.0	A:2:C:0:G:65:T:0:N:0:O:1	A:0:C:0:G:222:T:0:N:0:O:0	2,61,0,7	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	179	28	20	0.0273972602739726	0.0	A:2:C:0:G:0:T:47:N:0:O:24	A:0:C:0:G:0:T:179:N:0:O:0	2,53,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	178	28	20	0.05128205128205128	0.0	A:4:C:0:G:71:T:0:N:0:O:3	A:0:C:0:G:177:T:1:N:0:O:0	4,16,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	133	28	20	0.030927835051546393	0.0	A:0:C:88:G:0:T:3:N:0:O:6	A:4:C:129:G:0:T:0:N:0:O:0	3,33,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	133	28	20	0.025210084033613446	0.0	A:0:C:3:G:0:T:116:N:0:O:0	A:0:C:0:G:0:T:133:N:0:O:0	0,98,3,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	133	28	20	0.021739130434782608	0.0	A:3:C:0:G:124:T:0:N:0:O:11	A:0:C:0:G:133:T:0:N:0:O:0	3,71,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	129	28	20	0.022058823529411766	0.0	A:0:C:0:G:133:T:3:N:0:O:0	A:0:C:0:G:129:T:0:N:0:O:0	2,83,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	148	178	28	20	0.02027027027027027	0.0	A:0:C:0:G:3:T:145:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:0	3,35,0,113	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	179	28	20	0.03333333333333333	0.0	A:1:C:140:G:0:T:5:N:0:O:4	A:2:C:177:G:0:T:0:N:0:O:0	0,96,5,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22335	G	T	G	16	ignore low frequency variant	Pass	False	False	True	47	29	28	20	0.02127659574468085	0.0	A:0:C:0:G:46:T:1:N:0:O:0	A:0:C:0:G:29:T:0:N:0:O:0	0,20,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	22339	A	C	A	16	ignore low frequency variant	Pass	False	False	True	42	29	28	20	0.023809523809523808	0.0	A:41:C:1:G:0:T:0:N:0:O:0	A:29:C:0:G:0:T:0:N:0:O:0	1,18,0,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22378	T	G	T	16	ignore low frequency variant	Pass	False	False	True	51	44	28	20	0.0196078431372549	0.0	A:0:C:0:G:1:T:48:N:0:O:2	A:0:C:0:G:0:T:44:N:0:O:0	0,27,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22429	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	47	28	20	0.020833333333333332	0.0	A:47:C:0:G:1:T:0:N:0:O:0	A:47:C:0:G:0:T:0:N:0:O:0	0,23,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22436	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	47	28	20	0.025	0.0	A:1:C:0:G:39:T:0:N:0:O:0	A:0:C:0:G:47:T:0:N:0:O:0	1,18,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22443	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	47	28	20	0.022222222222222223	0.0	A:41:C:0:G:1:T:0:N:0:O:3	A:47:C:0:G:0:T:0:N:0:O:0	0,26,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22444	C	A	C	16	ignore low frequency variant	Pass	False	False	True	48	47	28	20	0.020833333333333332	0.0	A:1:C:47:G:0:T:0:N:0:O:0	A:0:C:47:G:0:T:0:N:0:O:0	0,27,1,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22465	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	47	28	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:43:N:0:O:1	A:0:C:0:G:0:T:47:N:0:O:0	0,25,1,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22467	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	47	28	20	0.024390243902439025	0.0	A:0:C:40:G:0:T:1:N:0:O:0	A:0:C:47:G:0:T:0:N:0:O:0	0,25,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	47	28	20	0.043478260869565216	0.0	A:0:C:2:G:0:T:43:N:0:O:1	A:0:C:0:G:0:T:47:N:0:O:0	0,20,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	22516	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	46	28	20	0.02127659574468085	0.0	A:0:C:0:G:1:T:44:N:0:O:2	A:0:C:0:G:0:T:46:N:0:O:0	1,21,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	139	149	28	20	0.9568345323741008	0.9865771812080537	A:0:C:0:G:133:T:0:N:0:O:6	A:1:C:0:G:147:T:1:N:0:O:0	74,80,59,59	280.0	1840.2	yes	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	153	28	20	0.0379746835443038	0.0	A:3:C:0:G:72:T:0:N:0:O:4	A:0:C:0:G:150:T:1:N:0:O:2	3,20,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	153	28	20	0.02040816326530612	0.0	A:95:C:0:G:2:T:0:N:0:O:1	A:152:C:0:G:0:T:0:N:0:O:1	2,54,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	148	28	20	0.07	0.0	A:0:C:93:G:0:T:7:N:0:O:0	A:0:C:148:G:0:T:0:N:0:O:0	0,74,7,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	23901	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	148	28	20	0.021739130434782608	0.0	A:89:C:2:G:0:T:0:N:0:O:1	A:147:C:0:G:1:T:0:N:0:O:0	0,33,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	148	28	20	0.02564102564102564	0.0	A:2:C:0:G:0:T:76:N:0:O:0	A:0:C:0:G:0:T:148:N:0:O:0	2,14,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	148	28	20	0.030927835051546393	0.0	A:3:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:148:T:0:N:0:O:0	3,17,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	148	28	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:148:T:0:N:0:O:0	2,19,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	148	28	20	0.020833333333333332	0.0	A:0:C:93:G:0:T:2:N:0:O:1	A:0:C:148:G:0:T:0:N:0:O:0	0,66,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	160	28	20	0.034482758620689655	0.00625	A:4:C:109:G:0:T:2:N:0:O:1	A:1:C:159:G:0:T:0:N:0:O:0	4,55,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	160	28	20	0.027777777777777776	0.0	A:131:C:0:G:0:T:4:N:0:O:9	A:160:C:0:G:0:T:0:N:0:O:0	4,90,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	160	28	20	0.027522935779816515	0.0	A:0:C:102:G:0:T:3:N:0:O:4	A:2:C:158:G:0:T:0:N:0:O:0	0,78,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	99	28	20	0.024793388429752067	0.0	A:0:C:0:G:116:T:3:N:0:O:2	A:0:C:0:G:99:T:0:N:0:O:0	3,52,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24868	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	99	28	20	0.023076923076923078	0.0	A:3:C:0:G:112:T:1:N:0:O:14	A:0:C:0:G:99:T:0:N:0:O:0	3,62,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	99	28	20	0.03614457831325301	0.0	A:3:C:0:G:79:T:0:N:0:O:1	A:0:C:0:G:99:T:0:N:0:O:0	0,57,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	99	28	20	0.045454545454545456	0.0	A:0:C:0:G:4:T:83:N:0:O:1	A:0:C:0:G:0:T:99:N:0:O:0	0,60,4,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	99	28	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:84:N:0:O:1	A:0:C:0:G:0:T:99:N:0:O:0	0,51,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	39	99	28	20	0.07692307692307693	0.0	A:0:C:3:G:0:T:36:N:0:O:0	A:0:C:0:G:0:T:99:N:0:O:0	3,23,0,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	132	28	20	0.02830188679245283	0.0	A:101:C:0:G:3:T:0:N:0:O:2	A:132:C:0:G:0:T:0:N:0:O:0	3,65,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	135	28	20	0.027777777777777776	0.0	A:105:C:0:G:0:T:3:N:0:O:0	A:135:C:0:G:0:T:0:N:0:O:0	3,52,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25513	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	135	28	20	0.03529411764705882	0.0	A:3:C:80:G:0:T:0:N:0:O:2	A:0:C:135:G:0:T:0:N:0:O:0	0,38,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	115	135	28	20	0.034782608695652174	0.014814814814814815	A:4:C:102:G:0:T:0:N:0:O:9	A:2:C:133:G:0:T:0:N:0:O:0	4,58,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	165	28	20	0.04504504504504504	0.012121212121212121	A:5:C:70:G:0:T:0:N:0:O:36	A:2:C:163:G:0:T:0:N:0:O:0	4,44,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	165	28	20	0.0196078431372549	0.0	A:49:C:1:G:0:T:0:N:0:O:1	A:165:C:0:G:0:T:0:N:0:O:0	0,37,1,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	165	28	20	0.02197802197802198	0.0	A:85:C:0:G:2:T:0:N:0:O:4	A:165:C:0:G:0:T:0:N:0:O:0	2,38,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	165	28	20	0.045454545454545456	0.0	A:62:C:0:G:3:T:0:N:0:O:1	A:165:C:0:G:0:T:0:N:0:O:0	3,22,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	165	28	20	0.02	0.0	A:0:C:97:G:0:T:2:N:0:O:1	A:2:C:163:G:0:T:0:N:0:O:0	2,62,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	165	28	20	0.041666666666666664	0.0	A:3:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	3,26,0,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26222	C	A	C	16	ignore low frequency variant	Pass	False	False	True	195	290	28	20	0.020512820512820513	0.0034482758620689655	A:4:C:190:G:0:T:0:N:0:O:1	A:1:C:289:G:0:T:0:N:0:O:0	0,140,4,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26314	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	140	28	20	0.02830188679245283	0.0	A:3:C:0:G:103:T:0:N:0:O:0	A:0:C:0:G:140:T:0:N:0:O:0	2,61,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	140	28	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:0:C:140:G:0:T:0:N:0:O:0	0,69,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	140	28	20	0.017543859649122806	0.0	A:0:C:83:G:0:T:2:N:0:O:29	A:0:C:140:G:0:T:0:N:0:O:0	0,105,2,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	140	28	20	0.020833333333333332	0.0	A:2:C:0:G:92:T:0:N:0:O:2	A:0:C:0:G:140:T:0:N:0:O:0	0,40,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	140	28	20	0.044444444444444446	0.0	A:0:C:86:G:0:T:4:N:0:O:0	A:1:C:139:G:0:T:0:N:0:O:0	0,63,4,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	140	28	20	0.03409090909090909	0.0	A:3:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:140:T:0:N:0:O:0	3,29,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	130	28	20	0.06837606837606838	0.0	A:107:C:0:G:0:T:8:N:0:O:2	A:130:C:0:G:0:T:0:N:0:O:0	8,36,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	130	28	20	0.10526315789473684	0.0	A:10:C:0:G:85:T:0:N:0:O:0	A:0:C:0:G:129:T:1:N:0:O:0	10,17,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26730	G	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	151	130	28	20	0.695364238410596	1.0	A:0:C:0:G:0:T:105:N:0:O:46	A:0:C:0:G:0:T:130:N:0:O:0	50,96,55,55	58.823	2163.3	yes	.	.	.	mixed position	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	130	28	20	0.03333333333333333	0.0	A:0:C:114:G:0:T:4:N:0:O:2	A:0:C:130:G:0:T:0:N:0:O:0	0,94,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	130	28	20	0.023255813953488372	0.0	A:0:C:124:G:0:T:3:N:0:O:2	A:0:C:130:G:0:T:0:N:0:O:0	0,92,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	125	28	20	0.022222222222222223	0.0	A:3:C:0:G:131:T:0:N:0:O:1	A:0:C:0:G:125:T:0:N:0:O:0	3,57,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	125	28	20	0.022556390977443608	0.0	A:3:C:0:G:130:T:0:N:0:O:0	A:0:C:0:G:122:T:2:N:0:O:1	3,60,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	142	28	20	0.04040404040404041	0.0	A:94:C:0:G:4:T:0:N:0:O:1	A:142:C:0:G:0:T:0:N:0:O:0	4,26,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	142	28	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:142:T:0:N:0:O:0	2,24,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	142	28	20	0.1375	0.0	A:0:C:69:G:0:T:11:N:0:O:0	A:0:C:142:G:0:T:0:N:0:O:0	0,58,11,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	28410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	101	28	20	0.024096385542168676	0.0	A:0:C:79:G:0:T:2:N:0:O:2	A:1:C:100:G:0:T:0:N:0:O:0	2,37,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	101	28	20	0.02666666666666667	0.0	A:0:C:71:G:0:T:2:N:0:O:2	A:1:C:100:G:0:T:0:N:0:O:0	2,39,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	28508	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	134	28	20	0.020618556701030927	0.0	A:94:C:0:G:2:T:0:N:0:O:1	A:134:C:0:G:0:T:0:N:0:O:0	2,46,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	134	28	20	0.024390243902439025	0.0	A:2:C:0:G:78:T:1:N:0:O:1	A:0:C:0:G:134:T:0:N:0:O:0	2,33,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	28761	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	153	28	20	0.02040816326530612	0.0	A:95:C:2:G:1:T:0:N:0:O:0	A:153:C:0:G:0:T:0:N:0:O:0	2,26,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	112	152	28	20	0.9821428571428571	1.0	A:110:C:0:G:1:T:0:N:0:O:1	A:152:C:0:G:0:T:0:N:0:O:0	36,38,74,74	199.443	2458.9	yes	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	105	152	28	20	0.9809523809523809	1.0	A:103:C:0:G:0:T:0:N:0:O:2	A:152:C:0:G:0:T:0:N:0:O:0	31,33,72,72	199.443	2458.9	yes	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	102	152	28	20	0.9705882352941176	1.0	A:0:C:99:G:1:T:0:N:0:O:2	A:0:C:152:G:0:T:0:N:0:O:0	32,34,67,68	199.443	2458.9	yes	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	154	28	20	0.02654867256637168	0.0	A:3:C:0:G:109:T:0:N:0:O:1	A:0:C:0:G:153:T:0:N:0:O:1	3,20,0,93	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	154	28	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:154:G:0:T:0:N:0:O:0	0,37,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	303	28	20	0.024193548387096774	0.0	A:0:C:120:G:0:T:3:N:0:O:1	A:1:C:302:G:0:T:0:N:0:O:0	0,100,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29056	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	163	28	20	0.02	0.0	A:47:C:0:G:0:T:1:N:0:O:2	A:163:C:0:G:0:T:0:N:0:O:0	1,6,0,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	164	28	20	0.02040816326530612	0.018292682926829267	A:2:C:93:G:0:T:0:N:0:O:3	A:3:C:161:G:0:T:0:N:0:O:0	2,42,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29131	T	G	T	16	ignore low frequency variant	Pass	False	False	True	138	164	28	20	0.028985507246376812	0.006097560975609756	A:0:C:0:G:4:T:113:N:0:O:21	A:0:C:0:G:1:T:163:N:0:O:0	0,56,4,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	164	28	20	0.03571428571428571	0.0	A:0:C:4:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,53,4,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	84	164	28	20	0.023809523809523808	0.0	A:0:C:2:G:82:T:0:N:0:O:0	A:0:C:0:G:162:T:2:N:0:O:0	0,29,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	185	28	20	0.02727272727272727	0.0	A:106:C:0:G:3:T:0:N:0:O:1	A:185:C:0:G:0:T:0:N:0:O:0	3,18,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	185	28	20	0.025423728813559324	0.0	A:3:C:0:G:102:T:0:N:0:O:13	A:0:C:0:G:183:T:2:N:0:O:0	3,24,0,94	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29564	T	C	T	16	ignore low frequency variant	Pass	False	False	True	244	209	28	20	0.020491803278688523	0.0	A:2:C:5:G:0:T:237:N:0:O:0	A:0:C:0:G:0:T:209:N:0:O:0	0,149,5,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	104	179	28	20	0.028846153846153848	0.0	A:0:C:3:G:101:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	3,36,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	29777	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	180	28	20	0.024390243902439025	0.0	A:2:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:180:T:0:N:0:O:0	1,41,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00044	artic-pipeline	NB10	MN908947.3	19368	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	22392	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	61	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00044	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	28	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:0:C:37:G:0:T:2:N:0:O:0	.	0,3,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,3,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	203	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:43:G:0:T:1:N:0:O:1	.	0,4,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	58	.	20	.	0.9655172413793104	.	A:0:C:0:G:0:T:56:N:0:O:2	.	4,6,52,52	69.237	1419.4	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	0,65,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:31:T:0:N:0:O:3	.	1,16,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1008	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:91:T:0:N:0:O:6	.	1,84,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1048	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:66:T:0:N:0:O:1	.	1,48,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	1.0	.	A:0:C:0:G:0:T:140:N:0:O:0	.	119,119,21,21	278.474	1639.5	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	1070	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	0,74,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.10416666666666667	.	A:5:C:0:G:36:T:0:N:0:O:7	.	3,24,2,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	1,77,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:92:G:0:T:4:N:0:O:1	.	0,30,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1500	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:79:G:0:T:2:N:0:O:10	.	0,42,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:90:N:0:O:0	.	0,33,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1696	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:129:T:3:N:0:O:2	.	1,58,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:97:T:3:N:0:O:1	.	0,41,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:69:C:0:G:0:T:2:N:0:O:1	.	0,43,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:3:G:0:T:113:N:0:O:5	.	0,43,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	0,37,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2067	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:93:N:0:O:0	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.08421052631578947	.	A:8:C:0:G:85:T:0:N:0:O:2	.	8,32,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	2298	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:127:N:0:O:0	.	1,48,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:80:C:0:G:2:T:0:N:0:O:17	.	0,24,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:83:T:0:N:0:O:1	.	0,17,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2509	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,28,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,31,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2710	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.016260162601626018	.	A:2:C:98:G:0:T:0:N:0:O:23	.	1,79,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2778	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:88:T:2:N:0:O:2	.	2,43,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2819	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:0:G:105:T:5:N:0:O:1	.	4,54,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	1,73,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:72:C:3:G:0:T:0:N:0:O:0	.	0,13,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	20	.	0.5901639344262295	.	A:0:C:0:G:0:T:72:N:0:O:50	.	28,78,44,44	48.165	1388.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	3145	G	T	N	18	ambiguous base in consensus	Check	False	False	False	77	.	20	.	0.03896103896103896	.	A:0:C:0:G:62:T:3:N:0:O:12	.	0,53,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:103:G:0:T:4:N:0:O:3	.	0,44,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,18,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:94:G:0:T:5:N:0:O:0	.	0,70,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4072	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,65,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	330	.	20	.	0.02727272727272727	.	A:9:C:0:G:310:T:0:N:0:O:11	.	9,79,0,251	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:73:N:0:O:1	.	0,64,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	269	.	20	.	0.05204460966542751	.	A:0:C:0:G:239:T:14:N:0:O:16	.	0,185,14,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.022123893805309734	.	A:0:C:0:G:196:T:5:N:0:O:25	.	0,183,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.03255813953488372	.	A:7:C:0:G:207:T:0:N:0:O:1	.	0,169,7,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	308	.	20	.	0.022727272727272728	.	A:7:C:0:G:297:T:0:N:0:O:4	.	0,141,7,167	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	294	.	20	.	0.027210884353741496	.	A:0:C:263:G:0:T:8:N:0:O:23	.	0,151,8,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	4766	T	C	T	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.053475935828877004	.	A:0:C:10:G:0:T:176:N:0:O:1	.	6,103,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:63:C:2:G:0:T:0:N:0:O:0	.	2,34,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07017543859649122	.	A:104:C:0:G:8:T:0:N:0:O:2	.	4,59,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5277	A	T	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.05970149253731343	.	A:126:C:0:G:0:T:8:N:0:O:0	.	3,68,5,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5438	T	C	T	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.03208556149732621	.	A:0:C:6:G:0:T:181:N:0:O:0	.	4,107,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5547	C	G	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:0:C:188:G:4:T:0:N:0:O:2	.	2,114,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5642	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,42,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:87:N:0:O:1	.	0,62,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.06349206349206349	.	A:0:C:4:G:0:T:57:N:0:O:2	.	0,48,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,50,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5814	G	T	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:0:G:64:T:2:N:0:O:0	.	1,28,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5821	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:78:C:0:G:3:T:0:N:0:O:0	.	3,41,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	5940	T	G	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:0:G:4:T:127:N:0:O:0	.	4,60,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	6026	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	1,15,1,82	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.14285714285714285	.	A:0:C:77:G:0:T:13:N:0:O:1	.	0,65,13,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:118:G:0:T:3:N:0:O:1	.	2,63,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:130:T:0:N:0:O:4	.	1,54,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:0:G:4:T:105:N:0:O:4	.	0,58,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.02242152466367713	.	A:209:C:0:G:5:T:1:N:0:O:8	.	4,80,1,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.03626943005181347	.	A:0:C:174:G:0:T:7:N:0:O:12	.	0,106,7,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,32,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:0:G:124:T:3:N:0:O:1	.	0,59,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	7013	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:0:C:5:G:0:T:133:N:0:O:0	.	3,59,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.07575757575757576	.	A:61:C:0:G:0:T:5:N:0:O:0	.	0,55,5,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	7224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:80:G:0:T:3:N:0:O:13	.	0,51,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	7330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,45,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:84:G:0:T:2:N:0:O:3	.	0,60,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:7:C:0:G:76:T:0:N:0:O:1	.	7,23,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:1:C:85:G:0:T:2:N:0:O:5	.	0,48,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	7743	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:0:G:127:T:5:N:0:O:0	.	2,46,3,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:147:C:0:G:3:T:0:N:0:O:0	.	3,58,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8325	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:127:C:0:G:0:T:3:N:0:O:2	.	1,61,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8410	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:0:T:129:N:0:O:13	.	2,75,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8460	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:105:G:0:T:3:N:0:O:1	.	1,66,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,64,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8583	T	A	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:0:T:120:N:0:O:2	.	1,70,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:111:N:0:O:0	.	3,58,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8673	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:122:G:0:T:0:N:0:O:8	.	3,70,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8683	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:126:G:0:T:3:N:0:O:0	.	2,64,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8789	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:4:C:0:G:123:T:0:N:0:O:0	.	3,58,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:71:T:0:N:0:O:5	.	2,9,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	8917	C	T	C	16	ignore low frequency variant	Pass	False	False	True	248	.	20	.	0.028225806451612902	.	A:0:C:238:G:0:T:7:N:0:O:3	.	0,152,7,96	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.029197080291970802	.	A:4:C:0:G:0:T:127:N:0:O:6	.	4,34,0,103	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	9539	C	T	N	2	allele in negative control	Alarm	False	False	False	164	.	20	.	0.03048780487804878	.	A:0:C:154:G:0:T:5:N:0:O:5	.	0,140,5,24	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	9579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:138:C:0:G:4:T:0:N:0:O:0	.	2,86,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	9797	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,65,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	10010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:93:G:0:T:2:N:0:O:7	.	0,63,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:123:N:0:O:1	.	0,61,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	10300	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.03496503496503497	.	A:5:C:0:G:137:T:0:N:0:O:1	.	2,55,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	250	.	20	.	0.028	.	A:7:C:0:G:241:T:0:N:0:O:2	.	7,88,0,162	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:0:C:97:G:0:T:5:N:0:O:1	.	0,58,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.06862745098039216	.	A:0:C:95:G:0:T:7:N:0:O:0	.	0,63,7,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.07547169811320754	.	A:0:C:0:G:8:T:93:N:0:O:5	.	0,49,8,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	11739	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:88:G:2:T:0:N:0:O:5	.	0,29,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	11740	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	0,13,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	281	.	20	.	0.014234875444839857	.	A:0:C:0:G:178:T:4:N:0:O:99	.	0,70,4,211	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:70:C:0:G:3:T:0:N:0:O:1	.	0,43,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:73:G:0:T:4:N:0:O:22	.	0,70,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.024896265560165973	.	A:0:C:235:G:0:T:6:N:0:O:0	.	0,101,6,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:86:C:3:G:0:T:0:N:0:O:0	.	2,43,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	12337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:64:C:0:G:3:T:0:N:0:O:0	.	2,33,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:0:C:93:G:0:T:5:N:0:O:0	.	0,80,5,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	12705	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:3:G:0:T:135:N:0:O:0	.	0,84,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	12900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:94:G:0:T:2:N:0:O:6	.	1,53,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	0,50,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:76:T:0:N:0:O:4	.	3,22,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:4:C:0:G:193:T:0:N:0:O:3	.	4,91,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	278	.	20	.	0.017985611510791366	.	A:5:C:1:G:0:T:240:N:0:O:32	.	5,171,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13305	G	T	G	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.027777777777777776	.	A:0:C:0:G:207:T:6:N:0:O:3	.	1,105,5,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:79:T:0:N:0:O:7	.	3,29,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0223463687150838	.	A:170:C:0:G:0:T:4:N:0:O:5	.	0,136,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.022727272727272728	.	A:167:C:0:G:0:T:4:N:0:O:5	.	0,140,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13837	C	T	C	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.023474178403755867	.	A:0:C:207:G:0:T:5:N:0:O:1	.	4,136,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:68:C:0:G:3:T:0:N:0:O:4	.	0,14,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	3,38,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:0:C:0:G:101:T:5:N:0:O:1	.	3,50,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:89:C:0:G:2:T:1:N:0:O:5	.	2,39,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14146	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:123:N:0:O:1	.	0,80,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	108	.	20	.	1.0	.	A:0:C:0:G:0:T:108:N:0:O:0	.	52,52,56,56	263.703	1268.8	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	14429	T	C	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:0:C:3:G:0:T:139:N:0:O:10	.	0,65,3,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14475	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:0:G:0:T:2:N:0:O:0	.	1,63,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,57,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:94:T:0:N:0:O:1	.	3,42,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:84:C:0:G:2:T:0:N:0:O:3	.	2,46,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:89:G:0:T:2:N:0:O:5	.	0,78,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14878	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	3,72,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:101:G:0:T:0:N:0:O:2	.	4,49,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14917	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:112:T:3:N:0:O:0	.	1,52,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:117:N:0:O:5	.	0,74,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15030	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:130:N:0:O:1	.	1,55,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15061	C	A	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:3:C:136:G:0:T:0:N:0:O:9	.	1,68,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:8:C:0:G:96:T:0:N:0:O:1	.	8,32,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:72:N:0:O:2	.	0,66,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,34,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15411	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:3:G:0:T:127:N:0:O:1	.	1,65,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:3:T:0:N:0:O:0	.	0,50,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:116:N:0:O:0	.	0,72,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15760	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:0:G:139:T:3:N:0:O:0	.	0,85,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.13114754098360656	.	A:0:C:52:G:0:T:8:N:0:O:1	.	0,29,8,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.05172413793103448	.	A:0:C:106:G:1:T:6:N:0:O:3	.	0,65,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,59,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16329	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:108:G:0:T:3:N:0:O:3	.	2,55,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16419	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:2:G:0:T:98:N:0:O:4	.	1,62,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:0:C:128:G:0:T:4:N:0:O:2	.	2,86,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:76:N:0:O:8	.	2,42,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:0:C:0:G:112:T:5:N:0:O:5	.	5,78,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16526	G	T	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.029197080291970802	.	A:0:C:0:G:133:T:4:N:0:O:0	.	2,86,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:70:T:0:N:0:O:7	.	5,28,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:93:C:0:G:4:T:0:N:0:O:7	.	4,55,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:0:G:4:T:103:N:0:O:0	.	0,62,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.03592814371257485	.	A:6:C:0:G:118:T:0:N:0:O:43	.	2,87,4,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	16943	G	T	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:0:G:75:T:2:N:0:O:1	.	2,46,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:73:C:2:G:0:T:0:N:0:O:2	.	2,34,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,10,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.06329113924050633	.	A:10:C:0:G:139:T:0:N:0:O:9	.	10,45,0,113	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:192:C:0:G:4:T:0:N:0:O:0	.	4,84,0,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:0:C:101:G:0:T:5:N:0:O:1	.	0,73,5,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	17548	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:138:G:0:T:3:N:0:O:0	.	2,66,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:138:T:0:N:0:O:0	.	3,40,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:122:N:0:O:0	.	0,71,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.058823529411764705	.	A:0:C:111:G:0:T:7:N:0:O:1	.	0,51,7,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17631	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:139:C:0:G:3:T:0:N:0:O:1	.	2,37,1,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17632	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:4:C:0:G:143:T:0:N:0:O:3	.	2,43,2,107	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:0:C:56:G:0:T:4:N:0:O:2	.	0,39,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:75:C:0:G:0:T:3:N:0:O:8	.	0,37,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.06796116504854369	.	A:7:C:0:G:96:T:0:N:0:O:0	.	0,62,7,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05128205128205128	.	A:6:C:0:G:110:T:0:N:0:O:1	.	3,58,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:84:C:0:G:4:T:0:N:0:O:7	.	4,27,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:4:C:0:G:69:T:0:N:0:O:0	.	4,19,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	18252	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.041666666666666664	.	A:0:C:184:G:0:T:8:N:0:O:0	.	3,60,5,132	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	247	.	20	.	0.024291497975708502	.	A:6:C:0:G:239:T:0:N:0:O:2	.	6,20,0,227	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:0:G:3:T:138:N:0:O:0	.	1,38,2,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:4:C:0:G:174:T:0:N:0:O:2	.	4,57,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	18470	A	G	A	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:182:C:0:G:4:T:0:N:0:O:6	.	4,71,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:88:C:0:G:2:T:0:N:0:O:3	.	2,22,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,22,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,13,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19018	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0213903743315508	.	A:0:C:183:G:0:T:4:N:0:O:0	.	0,94,4,93	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.04371584699453552	.	A:8:C:0:G:175:T:0:N:0:O:0	.	8,31,0,152	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19159	T	C	T	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.024390243902439025	.	A:0:C:5:G:0:T:199:N:0:O:1	.	0,91,5,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19406	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:0:G:116:T:0:N:0:O:11	.	2,56,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.10606060606060606	.	A:0:C:59:G:0:T:7:N:0:O:0	.	0,49,7,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,58,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	245	.	20	.	0.024489795918367346	.	A:6:C:0:G:0:T:186:N:0:O:53	.	0,76,6,169	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.0425531914893617	.	A:134:C:0:G:0:T:6:N:0:O:1	.	0,65,6,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:4:G:0:T:114:N:0:O:3	.	0,57,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,27,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	20066	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.04201680672268908	.	A:112:C:0:G:0:T:5:N:0:O:2	.	3,32,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:96:N:0:O:0	.	2,53,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:194:C:0:G:4:T:0:N:0:O:0	.	4,106,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:100:C:0:G:3:T:0:N:0:O:4	.	3,27,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,27,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	3,44,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.07352941176470588	.	A:63:C:0:G:5:T:0:N:0:O:0	.	0,2,5,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:5:C:0:G:98:T:0:N:0:O:8	.	0,25,5,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.05084745762711865	.	A:0:C:0:G:3:T:56:N:0:O:0	.	2,11,1,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:0:C:0:G:80:T:6:N:0:O:12	.	0,73,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,61,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.05172413793103448	.	A:0:C:110:G:0:T:6:N:0:O:0	.	0,70,6,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.016666666666666666	.	A:1:C:0:G:0:T:38:N:0:O:21	.	1,50,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:77:T:0:N:0:O:3	.	4,17,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:2:C:2:G:0:T:93:N:0:O:18	.	0,88,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21587	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:123:G:0:T:3:N:0:O:0	.	2,68,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:106:G:0:T:4:N:0:O:5	.	4,41,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21742	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:0:C:135:G:0:T:3:N:0:O:14	.	3,69,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:120:G:0:T:3:N:0:O:6	.	0,110,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:3:G:0:T:118:N:0:O:0	.	0,101,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.018867924528301886	.	A:3:C:0:G:147:T:0:N:0:O:9	.	3,74,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:129:G:0:T:3:N:0:O:1	.	0,62,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:88:T:0:N:0:O:0	.	3,42,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:92:N:0:O:0	.	2,28,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	22232	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:127:T:3:N:0:O:1	.	2,66,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:109:G:0:T:3:N:0:O:0	.	0,80,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.031088082901554404	.	A:0:C:0:G:187:T:6:N:0:O:0	.	0,129,6,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0335195530726257	.	A:6:C:0:G:171:T:1:N:0:O:1	.	6,52,0,127	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:91:G:0:T:2:N:0:O:13	.	1,89,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	1,75,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.044444444444444446	.	A:0:C:126:G:0:T:6:N:0:O:3	.	2,70,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:0:G:3:T:0:N:0:O:1	.	1,35,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	137	.	20	.	0.9051094890510949	.	A:0:C:0:G:124:T:0:N:0:O:13	.	71,84,53,53	140.0	1545.0	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	23415	C	G	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:110:G:4:T:0:N:0:O:1	.	3,56,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23420	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:114:T:0:N:0:O:0	.	2,64,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:76:T:0:N:0:O:5	.	4,18,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:108:N:0:O:3	.	0,76,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23874	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	76	.	20	.	0.2631578947368421	.	A:0:C:56:G:0:T:20:N:0:O:0	.	0,43,20,33	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23875	T	A	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:0:T:119:N:0:O:3	.	0,49,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,48,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0875	.	A:0:C:73:G:0:T:7:N:0:O:0	.	0,43,7,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24127	T	C	T	16	ignore low frequency variant	Pass	False	False	True	296	.	20	.	0.030405405405405407	.	A:0:C:9:G:0:T:286:N:0:O:1	.	2,112,7,184	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24195	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:122:N:0:O:2	.	1,60,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:81:T:0:N:0:O:4	.	3,14,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.0755813953488372	.	A:0:C:152:G:0:T:13:N:0:O:7	.	3,75,10,97	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:1:C:86:G:0:T:3:N:0:O:2	.	0,42,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,2,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:55:G:0:T:3:N:0:O:4	.	1,60,2,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:2:T:0:N:0:O:1	.	2,44,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24867	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:100:T:3:N:0:O:0	.	1,54,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	0,76,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:1:C:0:G:3:T:97:N:0:O:0	.	0,77,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:39:N:0:O:1	.	1,36,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	25163	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:4:C:112:G:0:T:0:N:0:O:13	.	4,91,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	25470	A	T	A	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.027777777777777776	.	A:207:C:0:G:0:T:6:N:0:O:3	.	1,61,5,155	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	220	.	20	.	0.9954545454545455	.	A:0:C:1:G:0:T:219:N:0:O:0	.	61,61,158,159	350.0	3384.6	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	26222	C	A	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:4:C:176:G:0:T:0:N:0:O:1	.	0,117,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,71,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:85:G:0:T:3:N:0:O:39	.	0,108,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,45,1,1	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:85:G:0:T:4:N:0:O:2	.	0,65,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:0:G:101:T:0:N:0:O:0	.	5,43,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.024896265560165973	.	A:0:C:235:G:0:T:6:N:0:O:0	.	0,205,6,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	282	.	20	.	0.024822695035460994	.	A:0:C:7:G:0:T:274:N:0:O:1	.	0,216,7,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.021052631578947368	.	A:174:C:0:G:0:T:4:N:0:O:12	.	3,121,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.022727272727272728	.	A:0:C:4:G:0:T:172:N:0:O:0	.	0,126,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.04225352112676056	.	A:130:C:0:G:0:T:6:N:0:O:6	.	6,54,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.10833333333333334	.	A:13:C:0:G:104:T:0:N:0:O:3	.	13,28,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0392156862745098	.	A:0:C:147:G:0:T:6:N:0:O:0	.	0,123,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,26,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:90:C:0:G:4:T:0:N:0:O:4	.	4,33,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,27,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.1375	.	A:0:C:69:G:0:T:11:N:0:O:0	.	0,59,11,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:1:T:2:N:0:O:1	.	0,66,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27337	G	T	G	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.027149321266968326	.	A:0:C:0:G:215:T:6:N:0:O:0	.	3,55,3,166	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:0:C:4:G:0:T:145:N:0:O:0	.	0,41,4,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27485	T	A	T	16	ignore low frequency variant	Pass	False	False	True	321	.	20	.	0.018691588785046728	.	A:6:C:0:G:0:T:258:N:0:O:57	.	3,129,3,192	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	259	.	20	.	0.02702702702702703	.	A:251:C:0:G:0:T:7:N:0:O:1	.	0,56,7,203	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27494	C	G	C	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:0:C:197:G:5:T:1:N:0:O:3	.	0,89,5,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	27998	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:121:G:0:T:4:N:0:O:1	.	2,61,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	2,68,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28150	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:0:T:93:N:0:O:0	.	2,68,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:90:G:0:T:2:N:0:O:7	.	0,74,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:97:G:0:T:0:N:0:O:4	.	5,71,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28401	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:2:G:0:T:0:N:0:O:0	.	2,54,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:98:C:0:G:0:T:2:N:0:O:4	.	2,44,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28749	T	C	T	16	ignore low frequency variant	Pass	False	False	True	255	.	20	.	0.027450980392156862	.	A:0:C:7:G:0:T:245:N:0:O:3	.	5,124,2,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:76:C:0:G:6:T:0:N:0:O:1	.	1,1,5,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,28,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:84:G:0:T:2:N:0:O:2	.	0,31,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:107:T:0:N:0:O:1	.	4,9,0,103	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,29,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:70:G:0:T:2:N:0:O:4	.	0,31,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,23,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:106:G:0:T:3:N:0:O:0	.	0,91,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:0:C:4:G:0:T:188:N:0:O:0	.	0,82,4,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:80:T:0:N:0:O:2	.	3,5,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29081	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.10526315789473684	.	A:0:C:0:G:119:T:14:N:0:O:0	.	9,59,5,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:109:G:0:T:1:N:0:O:4	.	4,54,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29199	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:77:G:0:T:2:N:0:O:1	.	0,32,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:39:C:0:G:2:T:0:N:0:O:2	.	0,1,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29391	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:40:C:0:G:1:T:1:N:0:O:1	.	0,5,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:85:T:0:N:0:O:1	.	3,17,1,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00068	artic-pipeline	NB01	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	341	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00068	artic-pipeline	NB01	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:48:G:0:T:1:N:0:O:2	.	0,6,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	84	.	20	.	0.9642857142857143	.	A:0:C:0:G:0:T:81:N:0:O:3	.	9,12,72,72	69.237	1794.5	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	388	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:118:T:0:N:0:O:0	.	1,29,2,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	0,44,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,17,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	457	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:81:N:0:O:3	.	0,15,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	522	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,44,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:113:T:3:N:0:O:0	.	0,38,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	619	C	T	T	17	accept high frequency variant	Pass	False	True	True	143	.	20	.	1.0	.	A:0:C:0:G:0:T:143:N:0:O:0	.	49,49,94,94	210.0	1592.7	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	859	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:97:N:0:O:3	.	0,60,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	0,59,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:2:C:0:G:36:T:0:N:0:O:2	.	2,10,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	139	.	20	.	1.0	.	A:0:C:0:G:0:T:139:N:0:O:0	.	109,109,30,30	210.0	1643.0	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:125:G:0:T:0:N:0:O:4	.	3,101,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	0,10,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:3:C:0:G:41:T:0:N:0:O:8	.	2,25,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:118:T:0:N:0:O:3	.	3,16,0,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	1343	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	2,20,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1391	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	0,30,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:98:G:0:T:2:N:0:O:4	.	0,32,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:87:G:0:T:3:N:0:O:3	.	0,35,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	0,31,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:109:G:0:T:3:N:0:O:1	.	0,22,3,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.018867924528301886	.	A:3:C:110:G:1:T:1:N:0:O:44	.	0,44,3,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:86:C:2:G:1:T:0:N:0:O:1	.	0,24,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1695	T	C	T	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.025380710659898477	.	A:0:C:5:G:0:T:180:N:0:O:12	.	0,35,5,162	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:150:C:0:G:4:T:0:N:0:O:0	.	1,3,3,151	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.022727272727272728	.	A:5:C:0:G:190:T:0:N:0:O:25	.	1,36,4,184	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:5:C:0:G:90:T:0:N:0:O:0	.	5,37,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	2322	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:98:N:0:O:2	.	0,35,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:127:C:3:G:0:T:0:N:0:O:0	.	3,42,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	2467	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:127:C:0:G:3:T:0:N:0:O:0	.	1,42,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	2607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	2,30,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	2672	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:111:T:0:N:0:O:2	.	3,60,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:70:G:0:T:3:N:0:O:2	.	0,68,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	2,22,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	2894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:80:T:0:N:0:O:3	.	2,25,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	128	.	20	.	0.6484375	.	A:0:C:0:G:0:T:83:N:0:O:45	.	56,101,27,27	44.065	1554.2	.	.	.	.	mixed position	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:91:G:0:T:4:N:0:O:0	.	0,47,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:30:T:1:N:0:O:6	.	1,28,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:2:C:0:G:38:T:0:N:0:O:0	.	0,24,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3856	G	C	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:40:T:0:N:0:O:1	.	1,20,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3867	A	C	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:1:G:0:T:0:N:0:O:0	.	0,21,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3884	C	A	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:32:G:0:T:0:N:0:O:0	.	1,12,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3892	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,13,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3893	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:39:T:0:N:0:O:0	.	1,21,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,28,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3962	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:1:G:0:T:0:N:0:O:0	.	1,26,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,28,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4002	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:46:G:0:T:0:N:0:O:0	.	0,23,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4025	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:1:G:0:T:49:N:0:O:1	.	0,28,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4059	C	G	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:1:T:0:N:0:O:1	.	1,29,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:39:G:0:T:1:N:0:O:2	.	0,31,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	291	.	20	.	0.020618556701030927	.	A:6:C:0:G:265:T:0:N:0:O:20	.	6,84,0,207	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:0:C:134:G:0:T:4:N:0:O:9	.	0,108,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	308	.	20	.	0.02922077922077922	.	A:0:C:0:G:290:T:9:N:0:O:9	.	0,214,9,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	266	.	20	.	0.03007518796992481	.	A:0:C:0:G:221:T:8:N:0:O:37	.	1,229,7,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	351	.	20	.	0.019943019943019943	.	A:1:C:320:G:0:T:7:N:0:O:23	.	0,190,7,161	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.027522935779816515	.	A:0:C:211:G:0:T:6:N:0:O:1	.	0,141,6,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5157	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:75:G:0:T:2:N:0:O:10	.	0,56,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:121:T:0:N:0:O:1	.	3,60,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.02403846153846154	.	A:0:C:201:G:0:T:5:N:0:O:2	.	0,136,5,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5605	G	A	G	16	ignore low frequency variant	Pass	False	False	True	270	.	20	.	0.018518518518518517	.	A:5:C:0:G:240:T:0:N:0:O:25	.	5,139,0,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5722	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:2:G:0:T:68:N:0:O:0	.	0,39,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.1282051282051282	.	A:0:C:33:G:0:T:5:N:0:O:1	.	0,33,5,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5783	A	T	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:56:C:0:G:0:T:2:N:0:O:6	.	2,36,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5829	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:68:C:0:G:2:T:0:N:0:O:2	.	0,33,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:1:C:0:G:48:T:0:N:0:O:7	.	1,15,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:0:C:92:G:0:T:6:N:0:O:3	.	0,71,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:117:G:0:T:3:N:0:O:0	.	3,63,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	6171	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:131:G:0:T:3:N:0:O:1	.	0,77,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0392156862745098	.	A:6:C:0:G:138:T:0:N:0:O:9	.	5,49,1,104	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.049107142857142856	.	A:209:C:0:G:11:T:0:N:0:O:4	.	11,104,0,120	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.07058823529411765	.	A:78:C:0:G:0:T:6:N:0:O:1	.	0,51,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	7142	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:3:T:0:N:0:O:1	.	2,62,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	7172	T	A	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:0:G:0:T:127:N:0:O:0	.	2,84,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:0:G:2:T:79:N:0:O:0	.	2,29,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	7470	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:128:C:0:G:3:T:0:N:0:O:1	.	3,68,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.08108108108108109	.	A:6:C:0:G:67:T:0:N:0:O:1	.	6,14,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:92:N:0:O:5	.	0,35,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	7788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.13333333333333333	.	A:0:C:104:G:0:T:16:N:0:O:0	.	4,38,12,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,42,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	8106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.05612244897959184	.	A:0:C:185:G:0:T:11:N:0:O:0	.	5,131,6,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	8368	G	C	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:81:T:0:N:0:O:0	.	2,36,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:3:G:0:T:67:N:0:O:0	.	0,40,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	8655	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	8702	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:22:T:0:N:0:O:0	.	1,13,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.021551724137931036	.	A:5:C:0:G:227:T:0:N:0:O:0	.	5,61,0,171	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,61,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	9290	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:131:T:0:N:0:O:1	.	2,60,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,61,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:130:T:3:N:0:O:1	.	0,65,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9527	T	A	T	16	ignore low frequency variant	Pass	False	False	True	299	.	20	.	0.023411371237458192	.	A:7:C:0:G:0:T:292:N:0:O:0	.	4,145,3,154	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9539	C	T	N	2	allele in negative control	Alarm	False	False	False	143	.	20	.	0.02097902097902098	.	A:0:C:136:G:0:T:3:N:0:O:4	.	0,127,3,16	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9542	T	C	N	2	allele in negative control	Alarm	False	False	False	176	.	20	.	0.022727272727272728	.	A:0:C:4:G:0:T:168:N:0:O:4	.	0,150,4,26	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9886	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:90:G:0:T:0:N:0:O:6	.	0,36,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:78:T:0:N:0:O:0	.	4,23,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:89:G:0:T:3:N:0:O:7	.	3,34,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:91:N:0:O:5	.	1,65,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:3:T:0:N:0:O:1	.	3,52,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10228	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:0:C:128:G:0:T:4:N:0:O:3	.	0,72,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10233	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:138:T:0:N:0:O:0	.	2,57,1,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10283	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:0:G:129:T:3:N:0:O:0	.	0,62,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:106:T:1:N:0:O:2	.	3,25,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:90:G:1:T:5:N:0:O:5	.	0,39,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:110:G:0:T:3:N:0:O:0	.	0,69,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:0:G:5:T:95:N:0:O:8	.	0,54,5,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10973	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	10986	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	2,15,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	11074	C	G	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:28:G:1:T:0:N:0:O:24	.	0,37,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	11107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	0,16,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	11138	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:94:T:2:N:0:O:1	.	0,17,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:64:G:1:T:3:N:0:O:5	.	0,21,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	11750	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:79:G:0:T:2:N:0:O:4	.	0,30,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	11771	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:119:T:0:N:0:O:0	.	2,55,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.01818181818181818	.	A:1:C:0:G:141:T:4:N:0:O:74	.	0,54,4,166	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:68:C:0:G:3:T:1:N:0:O:1	.	0,39,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:0:C:69:G:0:T:6:N:0:O:17	.	0,59,6,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:85:G:0:T:0:N:0:O:3	.	0,57,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:86:G:0:T:3:N:0:O:3	.	0,71,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:97:N:0:O:3	.	0,49,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	12938	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:87:T:2:N:0:O:0	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:103:C:0:G:3:T:0:N:0:O:2	.	3,34,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:77:G:1:T:2:N:0:O:1	.	0,52,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.025	.	A:5:C:0:G:192:T:0:N:0:O:3	.	5,83,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	243	.	20	.	0.0205761316872428	.	A:0:C:229:G:0:T:5:N:0:O:9	.	0,150,5,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13262	C	T	C	16	ignore low frequency variant	Pass	False	False	True	249	.	20	.	0.028112449799196786	.	A:0:C:237:G:0:T:7:N:0:O:5	.	2,138,5,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	295	.	20	.	0.020338983050847456	.	A:6:C:2:G:0:T:257:N:0:O:30	.	6,172,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:2:T:0:N:0:O:0	.	2,13,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.08536585365853659	.	A:0:C:74:G:0:T:7:N:0:O:1	.	0,65,7,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.05714285714285714	.	A:6:C:0:G:92:T:0:N:0:O:7	.	6,41,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:87:N:0:O:1	.	0,45,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13785	A	C	A	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.027149321266968326	.	A:214:C:6:G:0:T:0:N:0:O:1	.	6,123,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:115:T:0:N:0:O:6	.	3,25,0,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	0,62,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	100	.	20	.	0.99	.	A:0:C:0:G:0:T:99:N:0:O:1	.	45,46,54,54	390.452	1284.8	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	14567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,51,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	14912	A	G	G	14	new position at high frequency	Pass	False	True	True	110	.	20	.	1.0	.	A:0:C:0:G:110:T:0:N:0:O:0	.	58,58,52,52	202.453	753.5	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:1:C:2:G:0:T:97:N:0:O:0	.	0,69,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:6:C:0:G:77:T:0:N:0:O:1	.	6,33,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	15268	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:91:T:0:N:0:O:10	.	1,19,1,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	0,45,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:102:N:0:O:0	.	0,62,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.02072538860103627	.	A:4:C:0:G:189:T:0:N:0:O:0	.	4,115,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	16258	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:3:T:104:N:0:O:2	.	0,43,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:0:G:4:T:80:N:0:O:6	.	2,31,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:0:G:112:T:5:N:0:O:3	.	4,53,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:5:C:0:G:91:T:0:N:0:O:4	.	5,24,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:0:G:4:T:103:N:0:O:6	.	0,65,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17000	C	G	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:124:G:3:T:0:N:0:O:3	.	2,49,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:71:C:3:G:0:T:0:N:0:O:0	.	3,35,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.03488372093023256	.	A:158:C:0:G:6:T:0:N:0:O:8	.	6,54,0,118	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.07741935483870968	.	A:12:C:0:G:137:T:0:N:0:O:6	.	12,38,0,117	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:192:C:0:G:4:T:0:N:0:O:0	.	4,72,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:59:C:0:G:3:T:0:N:0:O:1	.	3,16,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.07692307692307693	.	A:5:C:0:G:0:T:57:N:0:O:3	.	4,18,1,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:4:C:0:G:151:T:0:N:0:O:0	.	4,66,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:4:C:1:G:138:T:0:N:0:O:0	.	4,80,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:0:C:142:G:0:T:4:N:0:O:3	.	0,87,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17761	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:0:G:126:T:3:N:0:O:0	.	2,58,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:70:G:0:T:3:N:0:O:0	.	0,48,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:87:C:0:G:1:T:4:N:0:O:9	.	0,47,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.12844036697247707	.	A:14:C:0:G:95:T:0:N:0:O:0	.	0,61,14,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,33,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:97:C:0:G:3:T:0:N:0:O:5	.	3,29,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,25,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	18111	T	C	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:0:C:4:G:0:T:136:N:0:O:7	.	0,57,4,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.04736842105263158	.	A:0:C:181:G:0:T:9:N:0:O:0	.	0,101,9,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.031446540880503145	.	A:0:C:145:G:0:T:5:N:0:O:9	.	5,29,0,130	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	2,41,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	18711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:5:G:0:T:126:N:0:O:1	.	5,62,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	18913	T	A	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:0:T:125:N:0:O:9	.	0,61,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.02843601895734597	.	A:6:C:0:G:203:T:0:N:0:O:2	.	6,34,0,177	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19293	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	0,40,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19332	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:87:N:0:O:4	.	0,37,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19448	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:0:C:113:G:0:T:4:N:0:O:0	.	0,58,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.1	.	A:0:C:63:G:0:T:7:N:0:O:0	.	0,47,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,24,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:4:G:0:T:133:N:0:O:8	.	0,81,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.017316017316017316	.	A:4:C:0:G:0:T:185:N:0:O:42	.	1,76,3,155	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02702702702702703	.	A:143:C:0:G:0:T:4:N:0:O:1	.	1,64,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	19868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.04128440366972477	.	A:0:C:205:G:1:T:9:N:0:O:3	.	0,114,9,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:93:N:0:O:1	.	2,50,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	20450	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:2:G:0:T:1:N:0:O:0	.	1,58,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	20600	T	A	T	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.03111111111111111	.	A:7:C:0:G:0:T:218:N:0:O:0	.	0,110,7,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:0:G:89:T:5:N:0:O:7	.	0,76,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21150	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:89:C:0:G:2:T:0:N:0:O:4	.	0,61,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:96:G:0:T:4:N:0:O:0	.	0,66,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:117:G:0:T:3:N:0:O:0	.	0,78,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:0:C:87:G:0:T:5:N:0:O:0	.	0,55,5,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:96:C:0:G:0:T:2:N:0:O:3	.	2,32,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:91:T:0:N:0:O:1	.	4,18,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:0:T:83:N:0:O:20	.	0,78,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04838709677419355	.	A:0:C:108:G:0:T:6:N:0:O:10	.	0,87,6,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:0:C:6:G:0:T:106:N:0:O:0	.	0,73,6,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:1:C:3:G:0:T:140:N:0:O:2	.	0,67,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	21962	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:136:G:0:T:3:N:0:O:9	.	0,85,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,49,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	22212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	2,64,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22357	T	A	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:0:G:0:T:19:N:0:O:0	.	1,6,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	0,15,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22383	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:22:G:0:T:0:N:0:O:3	.	0,15,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22385	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	1,11,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22443	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:26:C:0:G:1:T:0:N:0:O:4	.	0,12,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22444	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:24:G:0:T:0:N:0:O:1	.	0,15,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22453	A	C	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:1:G:0:T:0:N:0:O:0	.	1,14,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22462	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	1,15,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22464	G	T	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:0:G:24:T:1:N:0:O:0	.	1,13,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22466	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:21:C:0:G:1:T:0:N:0:O:1	.	1,12,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22533	A	T	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:0:T:1:N:0:O:0	.	0,10,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,102,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	22690	T	C	T	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.021367521367521368	.	A:0:C:5:G:0:T:228:N:0:O:1	.	3,86,2,148	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	253	.	20	.	0.019762845849802372	.	A:0:C:225:G:0:T:5:N:0:O:23	.	1,231,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23124	C	T	C	16	ignore low frequency variant	Pass	False	False	True	294	.	20	.	0.02040816326530612	.	A:0:C:287:G:0:T:6:N:0:O:1	.	3,201,3,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	139	.	20	.	0.9496402877697842	.	A:0:C:0:G:132:T:0:N:0:O:7	.	82,89,50,50	69.237	1574.5	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:88:T:0:N:0:O:3	.	3,19,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:95:C:0:G:3:T:0:N:0:O:1	.	3,16,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.11392405063291139	.	A:0:C:69:G:0:T:9:N:0:O:1	.	0,51,9,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:1:C:3:G:0:T:89:N:0:O:0	.	0,46,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:0:T:78:N:0:O:0	.	2,19,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:105:G:0:T:0:N:0:O:4	.	3,35,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24049	A	C	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:126:C:4:G:0:T:0:N:0:O:1	.	2,43,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:52:G:0:T:2:N:0:O:0	.	0,46,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24100	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:94:N:0:O:2	.	0,48,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.06944444444444445	.	A:0:C:60:G:0:T:5:N:0:O:7	.	0,67,5,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:93:T:0:N:0:O:5	.	3,20,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.05454545454545454	.	A:0:C:48:G:0:T:3:N:0:O:4	.	1,46,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:114:T:3:N:0:O:2	.	3,73,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:0:T:95:N:0:O:0	.	1,59,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:87:N:0:O:1	.	1,72,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	44	.	20	.	0.13636363636363635	.	A:0:C:6:G:0:T:38:N:0:O:0	.	5,34,1,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	0,0,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:114:G:0:T:3:N:0:O:7	.	0,64,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.026881720430107527	.	A:181:C:0:G:0:T:5:N:0:O:0	.	5,62,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.02197802197802198	.	A:1:C:0:G:4:T:176:N:0:O:1	.	4,52,0,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	209	.	20	.	1.0	.	A:0:C:0:G:0:T:209:N:0:O:0	.	68,68,141,141	210.0	3243.4	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	25654	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:43:T:0:N:0:O:0	.	0,14,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25655	T	A	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.047619047619047616	.	A:2:C:0:G:0:T:39:N:0:O:1	.	0,16,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,19,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25672	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:37:G:0:T:1:N:0:O:8	.	0,26,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	25699	G	C	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:44:T:0:N:0:O:4	.	1,17,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25702	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:35:G:0:T:1:N:0:O:1	.	0,19,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25721	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,12,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:1:G:34:T:0:N:0:O:1	.	1,7,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:30:G:0:T:1:N:0:O:3	.	1,15,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25784	G	T	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:43:T:1:N:0:O:0	.	1,18,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	25792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:34:G:0:T:2:N:0:O:0	.	0,18,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:1:C:32:G:0:T:0:N:0:O:21	.	1,18,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25802	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:1:G:0:T:0:N:0:O:0	.	0,10,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,18,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:35:G:1:T:1:N:0:O:0	.	0,21,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25846	A	C	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:1:G:0:T:0:N:0:O:0	.	0,14,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.08333333333333333	.	A:21:C:0:G:0:T:2:N:0:O:1	.	0,15,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25848	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,13,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25863	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,14,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:37:C:0:G:1:T:0:N:0:O:1	.	1,12,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25878	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:2:G:0:T:50:N:0:O:0	.	0,20,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:30:C:0:G:1:T:0:N:0:O:2	.	1,5,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25884	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,9,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:1:T:0:N:0:O:0	.	1,11,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:1:T:0:N:0:O:1	.	1,11,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.03488372093023256	.	A:0:C:166:G:0:T:6:N:0:O:0	.	3,73,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,72,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26374	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:94:N:0:O:0	.	0,76,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:112:G:0:T:3:N:0:O:2	.	0,80,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.014084507042253521	.	A:0:C:95:G:0:T:2:N:0:O:45	.	0,118,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:96:T:0:N:0:O:1	.	3,50,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,36,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:91:T:0:N:0:O:0	.	5,34,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	261	.	20	.	0.03065134099616858	.	A:8:C:0:G:0:T:253:N:0:O:0	.	8,125,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:120:G:0:T:3:N:0:O:2	.	3,62,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:104:C:0:G:0:T:5:N:0:O:3	.	5,36,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.10989010989010989	.	A:10:C:0:G:81:T:0:N:0:O:0	.	10,16,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:122:G:0:T:4:N:0:O:1	.	0,103,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:87:N:0:O:8	.	0,79,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:1:C:97:G:0:T:2:N:0:O:2	.	0,59,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:0:T:2:N:0:O:1	.	1,54,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:4:C:0:G:69:T:0:N:0:O:0	.	4,15,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:0:C:78:G:0:T:6:N:0:O:0	.	0,59,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27155	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.06422018348623854	.	A:0:C:101:G:1:T:7:N:0:O:0	.	5,50,2,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	1,28,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:133:N:0:O:0	.	0,28,3,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:0:C:124:G:0:T:4:N:0:O:4	.	0,38,4,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.028846153846153848	.	A:200:C:0:G:0:T:6:N:0:O:2	.	1,30,5,178	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27521	A	C	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:37:C:1:G:0:T:0:N:0:O:1	.	0,23,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27522	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:0:T:38:N:0:O:1	.	0,21,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27525	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	1,21,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	27529	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,20,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27588	T	A	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:0:T:42:N:0:O:1	.	1,21,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,10,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27626	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:48:T:0:N:0:O:0	.	1,20,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27627	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:0:T:49:N:0:O:0	.	1,25,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27638	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:47:N:0:O:0	.	0,24,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27653	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:1:C:3:G:0:T:48:N:0:O:0	.	1,27,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27668	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	0,22,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27669	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:0:T:1:N:0:O:0	.	0,21,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27674	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:1:G:0:T:0:N:0:O:0	.	1,14,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:35:G:0:T:0:N:0:O:0	.	1,18,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:34:T:0:N:0:O:2	.	1,8,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27776	T	G	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:0:G:2:T:59:N:0:O:0	.	0,29,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27782	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:44:G:0:T:0:N:0:O:2	.	0,26,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27792	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,19,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	27961	A	G	A	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.03289473684210526	.	A:147:C:0:G:5:T:0:N:0:O:0	.	2,71,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	0,79,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:0:T:75:N:0:O:1	.	0,36,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:1:T:91:N:0:O:2	.	2,62,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28459	A	G	A	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.03289473684210526	.	A:147:C:0:G:5:T:0:N:0:O:0	.	5,99,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28586	A	C	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:133:C:3:G:0:T:0:N:0:O:0	.	3,83,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28588	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:83:N:0:O:4	.	2,31,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:99:C:0:G:3:T:0:N:0:O:2	.	3,49,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.017341040462427744	.	A:3:C:127:G:0:T:0:N:0:O:43	.	3,132,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28725	C	T	C	16	ignore low frequency variant	Pass	False	False	True	265	.	20	.	0.022641509433962263	.	A:0:C:258:G:0:T:6:N:0:O:1	.	0,148,6,117	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:91:N:0:O:5	.	0,40,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,6,0,104	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:83:G:0:T:3:N:0:O:7	.	0,37,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:125:G:0:T:3:N:0:O:2	.	0,117,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29023	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:141:N:0:O:1	.	0,114,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:37:C:1:G:0:T:0:N:0:O:3	.	1,6,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:0:C:106:G:0:T:5:N:0:O:7	.	4,71,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29101	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:139:C:0:G:3:T:0:N:0:O:2	.	3,61,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:111:G:0:T:0:N:0:O:8	.	3,74,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:132:N:0:O:1	.	0,81,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:112:C:0:G:4:T:0:N:0:O:1	.	2,42,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29256	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:139:T:0:N:0:O:0	.	2,69,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:47:C:0:G:2:T:0:N:0:O:0	.	2,6,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:6:C:0:G:105:T:0:N:0:O:1	.	6,27,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:1:G:115:T:0:N:0:O:16	.	3,48,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29673	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:0:T:1:N:0:O:0	.	1,24,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29675	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	1,24,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29691	T	G	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:0:G:1:T:37:N:0:O:0	.	0,20,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:35:G:0:T:1:N:0:O:1	.	0,22,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	29733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.05405405405405406	.	A:0:C:35:G:0:T:2:N:0:O:0	.	0,21,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:33:T:0:N:0:O:1	.	1,15,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29776	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:34:C:0:G:1:T:1:N:0:O:4	.	1,24,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00069	artic-pipeline	NB02	MN908947.3	29824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	1,24,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	304	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00069	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:0:T:62:N:0:O:9	.	0,19,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:42:G:0:T:2:N:0:O:1	.	0,17,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	69	.	20	.	0.9565217391304348	.	A:0:C:0:G:0:T:66:N:0:O:3	.	10,13,56,56	685.252	2223.3	.	.	.	.	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:90:N:0:O:3	.	2,17,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:1:T:88:N:0:O:4	.	2,18,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	522	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:0:T:93:N:0:O:0	.	0,47,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:113:C:0:G:3:T:0:N:0:O:10	.	0,51,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,44,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:1:C:112:G:0:T:3:N:0:O:1	.	1,48,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,49,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	1.0	.	A:0:C:0:G:0:T:140:N:0:O:0	.	104,104,36,36	70.0	1728.8	.	.	.	.	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.05263157894736842	.	A:35:C:0:G:2:T:0:N:0:O:1	.	1,7,1,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:2:C:0:G:46:T:0:N:0:O:15	.	1,18,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1203	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:106:C:0:G:4:T:0:N:0:O:1	.	4,75,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.06666666666666667	.	A:4:C:0:G:55:T:0:N:0:O:1	.	4,31,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:112:G:0:T:4:N:0:O:0	.	0,48,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1581	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:105:N:0:O:0	.	0,50,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1698	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,43,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.09	.	A:9:C:0:G:90:T:0:N:0:O:1	.	9,21,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:0:T:89:N:0:O:0	.	1,20,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:129:C:3:G:0:T:0:N:0:O:0	.	3,29,0,103	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	2607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:118:G:0:T:3:N:0:O:2	.	3,44,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:152:C:5:G:0:T:0:N:0:O:0	.	5,87,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	2850	T	C	T	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.02564102564102564	.	A:0:C:4:G:0:T:151:N:0:O:1	.	0,99,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.6666666666666666	.	A:0:C:0:G:0:T:84:N:0:O:42	.	41,83,43,43	60.206	1459.5	.	.	.	.	mixed position	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:87:T:2:N:0:O:1	.	0,27,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:78:T:2:N:0:O:11	.	0,61,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:0:T:82:N:0:O:1	.	0,38,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:93:C:0:G:5:T:0:N:0:O:0	.	0,41,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:0:T:2:N:0:O:0	.	0,42,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:68:G:0:T:4:N:0:O:1	.	0,27,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.08571428571428572	.	A:0:C:64:G:0:T:6:N:0:O:0	.	0,23,6,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:0:C:81:G:0:T:6:N:0:O:1	.	0,62,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:88:T:2:N:0:O:12	.	1,51,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:88:T:0:N:0:O:1	.	0,40,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:60:G:0:T:2:N:0:O:0	.	0,50,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:60:G:0:T:2:N:0:O:0	.	0,51,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,53,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:94:G:0:T:3:N:0:O:4	.	0,56,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.034934497816593885	.	A:8:C:0:G:215:T:0:N:0:O:6	.	8,53,0,176	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4143	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:97:C:0:G:2:T:0:N:0:O:5	.	2,15,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4264	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:1:T:97:N:0:O:0	.	0,36,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.06976744186046512	.	A:0:C:38:G:0:T:3:N:0:O:2	.	0,28,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:0:T:82:N:0:O:12	.	0,35,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.03482587064676617	.	A:0:C:0:G:187:T:7:N:0:O:7	.	0,139,7,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.016216216216216217	.	A:0:C:0:G:142:T:3:N:0:O:40	.	0,160,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:0:G:3:T:115:N:0:O:14	.	0,66,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,66,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,32,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	5402	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,58,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.03414634146341464	.	A:0:C:197:G:0:T:7:N:0:O:1	.	0,126,7,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.07792207792207792	.	A:0:C:70:G:0:T:6:N:0:O:1	.	0,62,6,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:3:G:0:T:80:N:0:O:4	.	0,41,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6000	T	G	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:3:T:118:N:0:O:1	.	3,65,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:0:C:75:G:0:T:6:N:0:O:2	.	0,64,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:85:N:0:O:9	.	1,75,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:77:C:0:G:2:T:0:N:0:O:1	.	2,46,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6427	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:0:T:83:N:0:O:5	.	2,34,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6632	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:73:T:0:N:0:O:1	.	2,37,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,60,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,24,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:71:C:0:G:0:T:3:N:0:O:1	.	0,48,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	1,36,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	7289	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:109:T:3:N:0:O:0	.	0,58,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:80:G:0:T:3:N:0:O:5	.	0,47,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:95:C:0:G:0:T:3:N:0:O:2	.	2,30,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:89:N:0:O:4	.	0,41,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	2,29,1,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	7939	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:97:N:0:O:2	.	0,50,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:1:T:109:N:0:O:0	.	0,51,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:116:T:0:N:0:O:1	.	3,36,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:103:N:0:O:0	.	0,56,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:97:C:0:G:3:T:0:N:0:O:2	.	2,61,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,59,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8742	G	T	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:2:C:0:G:113:T:3:N:0:O:19	.	2,71,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8743	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:3:T:102:N:0:O:0	.	2,43,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:78:T:0:N:0:O:1	.	4,12,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:0:T:82:N:0:O:7	.	3,36,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:0:G:131:T:3:N:0:O:2	.	0,77,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	9714	C	T	N	2	allele in negative control	Alarm	False	False	False	103	.	20	.	0.019417475728155338	.	A:1:C:91:G:1:T:2:N:0:O:8	.	0,76,2,27	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:79:T:0:N:0:O:0	.	4,28,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:88:G:0:T:2:N:0:O:16	.	2,41,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,26,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.031818181818181815	.	A:0:C:7:G:0:T:211:N:0:O:2	.	0,128,7,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:106:N:0:O:6	.	0,60,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:0:G:1:T:37:N:0:O:0	.	1,10,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:127:T:3:N:0:O:1	.	3,66,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11448	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:67:C:0:G:2:T:0:N:0:O:0	.	1,50,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:0:T:2:N:0:O:0	.	2,49,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:74:G:0:T:3:N:0:O:0	.	0,52,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:0:T:2:N:0:O:1	.	2,46,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:0:G:72:T:5:N:0:O:39	.	0,35,5,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.11764705882352941	.	A:30:C:0:G:4:T:0:N:0:O:0	.	0,16,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	11996	A	T	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:0:T:1:N:0:O:0	.	0,17,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:44:G:0:T:2:N:0:O:10	.	0,32,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0390625	.	A:0:C:122:G:0:T:5:N:0:O:1	.	0,53,5,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.07692307692307693	.	A:4:C:0:G:41:T:0:N:0:O:7	.	0,31,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:96:G:0:T:0:N:0:O:4	.	0,49,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.06944444444444445	.	A:0:C:65:G:0:T:5:N:0:O:2	.	0,54,5,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:117:C:0:G:4:T:0:N:0:O:3	.	4,43,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:80:T:0:N:0:O:4	.	2,23,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13383	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	1,48,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.06349206349206349	.	A:0:C:59:G:0:T:4:N:0:O:0	.	0,57,4,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13486	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:85:T:2:N:0:O:0	.	2,43,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13487	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	2,47,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:80:T:0:N:0:O:8	.	5,34,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13512	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:2:T:1:N:0:O:1	.	2,45,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:95:N:0:O:3	.	0,46,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:86:G:0:T:0:N:0:O:6	.	2,43,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:0:G:3:T:0:N:0:O:0	.	3,36,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13785	A	C	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:124:C:3:G:0:T:0:N:0:O:0	.	3,61,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:40:C:0:G:1:T:0:N:0:O:6	.	0,3,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,34,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	14129	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,44,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	108	.	20	.	0.9907407407407407	.	A:0:C:1:G:0:T:107:N:0:O:0	.	59,60,48,48	337.776	1453.3	.	.	.	.	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	1,64,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:109:T:0:N:0:O:2	.	3,43,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:4:G:0:T:74:N:0:O:3	.	0,66,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.12962962962962962	.	A:0:C:46:G:0:T:7:N:0:O:1	.	0,26,7,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	15958	G	C	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:96:T:0:N:0:O:1	.	0,57,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:101:G:0:T:3:N:0:O:1	.	0,62,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,64,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	16424	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:89:N:0:O:3	.	0,59,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:86:N:0:O:1	.	0,28,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:110:T:3:N:0:O:2	.	2,58,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:0:G:5:T:85:N:0:O:1	.	0,45,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.025	.	A:4:C:0:G:118:T:1:N:0:O:37	.	0,61,4,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:5:C:0:G:179:T:0:N:0:O:5	.	5,33,0,156	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:75:C:0:G:3:T:0:N:0:O:3	.	3,15,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:4:C:0:G:0:T:70:N:0:O:1	.	4,13,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	0,66,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.09210526315789473	.	A:0:C:67:G:0:T:7:N:0:O:2	.	0,50,7,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:0:C:85:G:0:T:5:N:0:O:2	.	0,36,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:95:C:0:G:0:T:2:N:0:O:6	.	0,38,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,47,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.06837606837606838	.	A:8:C:0:G:109:T:0:N:0:O:0	.	0,67,8,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:95:G:0:T:2:N:0:O:3	.	0,55,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:98:G:0:T:2:N:0:O:5	.	2,23,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:33:C:0:G:0:T:1:N:0:O:2	.	0,17,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	18989	T	A	T	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.03463203463203463	.	A:8:C:1:G:0:T:222:N:0:O:0	.	8,98,0,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.02631578947368421	.	A:5:C:0:G:185:T:0:N:0:O:0	.	5,37,0,153	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.07575757575757576	.	A:0:C:60:G:0:T:5:N:0:O:1	.	0,52,5,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	19677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:141:T:0:N:0:O:0	.	1,44,2,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19747	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:0:C:4:G:0:T:139:N:0:O:0	.	0,53,4,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.022727272727272728	.	A:5:C:0:G:0:T:161:N:0:O:54	.	0,58,5,162	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:106:C:0:G:0:T:5:N:0:O:1	.	0,56,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:0:C:6:G:0:T:103:N:0:O:3	.	0,48,6,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:96:N:0:O:3	.	0,36,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	19980	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,37,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	2,7,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:98:C:0:G:2:T:0:N:0:O:6	.	2,34,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:0:G:2:T:74:N:0:O:0	.	2,8,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:0:G:80:T:4:N:0:O:13	.	0,67,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:0:C:84:G:0:T:6:N:0:O:0	.	0,51,6,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21194	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,54,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.015625	.	A:1:C:0:G:0:T:40:N:0:O:23	.	1,49,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:92:G:0:T:2:N:0:O:4	.	0,62,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21434	T	A	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:0:T:104:N:0:O:1	.	3,46,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:79:T:0:N:0:O:3	.	3,17,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:1:C:2:G:0:T:85:N:0:O:17	.	0,77,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:119:N:0:O:0	.	0,66,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:120:C:0:G:0:T:3:N:0:O:0	.	3,48,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21654	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:87:G:0:T:2:N:0:O:3	.	0,66,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:84:G:0:T:3:N:0:O:3	.	2,25,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:91:G:0:T:3:N:0:O:6	.	0,71,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,26,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:5:C:0:G:110:T:0:N:0:O:7	.	5,48,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:0:G:2:T:78:N:0:O:1	.	2,23,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.031578947368421054	.	A:6:C:0:G:184:T:0:N:0:O:0	.	5,99,1,91	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:0:C:0:G:4:T:182:N:0:O:2	.	4,67,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	22333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,51,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	22438	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:2:G:0:T:0:N:0:O:1	.	2,50,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	22508	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:0:T:81:N:0:O:4	.	2,60,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:0:G:2:T:75:N:0:O:4	.	2,33,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.024539877300613498	.	A:0:C:137:G:0:T:4:N:0:O:22	.	0,135,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:54:C:0:G:2:T:0:N:0:O:0	.	2,31,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9264705882352942	.	A:0:C:0:G:126:T:0:N:0:O:10	.	67,77,59,59	70.0	1645.0	.	.	.	.	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:83:T:0:N:0:O:4	.	3,16,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	23804	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:131:T:0:N:0:O:1	.	3,70,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	23805	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:3:T:0:N:0:O:0	.	3,68,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.10526315789473684	.	A:0:C:67:G:0:T:8:N:0:O:1	.	0,44,8,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:0:T:82:N:0:O:0	.	2,8,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:59:G:0:T:2:N:0:O:0	.	0,38,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,41,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:74:G:0:T:2:N:0:O:8	.	0,76,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:80:T:0:N:0:O:1	.	3,31,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0759493670886076	.	A:6:C:0:G:70:T:0:N:0:O:3	.	6,23,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24278	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:1:T:68:N:0:O:1	.	2,21,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24323	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	2,45,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:1:C:143:G:0:T:4:N:0:O:6	.	0,55,4,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.04	.	A:0:C:139:G:0:T:6:N:0:O:5	.	0,91,6,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	2,58,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:0:C:0:G:110:T:5:N:0:O:3	.	5,81,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	0,84,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	44	.	20	.	0.06818181818181818	.	A:0:C:3:G:0:T:41:N:0:O:0	.	3,38,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	25053	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	0,73,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25060	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	25219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:97:N:0:O:0	.	2,46,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:77:C:0:G:2:T:0:N:0:O:6	.	2,24,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:3:T:101:N:0:O:1	.	3,42,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:97:C:0:G:2:T:0:N:0:O:4	.	2,41,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:0:G:3:T:91:N:0:O:1	.	3,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	128	.	20	.	0.9765625	.	A:0:C:0:G:2:T:125:N:0:O:1	.	63,63,62,65	280.0	1985.0	.	.	.	.	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:4:C:98:G:0:T:0:N:0:O:8	.	4,63,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25726	G	T	T	14	new position at high frequency	Pass	False	True	True	133	.	20	.	0.9849624060150376	.	A:0:C:0:G:0:T:131:N:0:O:2	.	73,75,58,58	279.237	1620.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03759398496240601	.	A:5:C:82:G:0:T:0:N:0:O:46	.	4,48,1,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	0,59,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:110:C:0:G:3:T:0:N:0:O:2	.	3,46,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:84:C:0:G:3:T:0:N:0:O:1	.	3,28,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:115:C:0:G:3:T:0:N:0:O:1	.	3,62,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:0:T:81:N:0:O:5	.	0,58,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	1,57,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:93:G:0:T:4:N:0:O:0	.	0,61,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,61,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:5:C:0:G:97:T:0:N:0:O:0	.	5,42,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:89:C:0:G:5:T:0:N:0:O:0	.	5,34,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:1:G:94:T:0:N:0:O:1	.	4,35,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	3,27,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:82:C:0:G:0:T:5:N:0:O:1	.	5,30,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.08333333333333333	.	A:6:C:0:G:65:T:0:N:0:O:1	.	6,10,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:104:C:0:G:3:T:2:N:0:O:0	.	3,57,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:5:C:0:G:70:T:0:N:0:O:1	.	5,18,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.12658227848101267	.	A:0:C:69:G:0:T:10:N:0:O:0	.	0,56,10,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,59,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:110:T:0:N:0:O:0	.	4,49,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:0:G:3:T:0:N:0:O:0	.	3,42,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27406	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:69:G:0:T:2:N:0:O:12	.	1,57,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,45,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27540	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,57,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:73:T:0:N:0:O:1	.	2,16,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28147	C	A	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:65:G:0:T:0:N:0:O:9	.	3,65,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.05660377358490566	.	A:0:C:0:G:3:T:50:N:0:O:0	.	3,53,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:0:C:3:G:0:T:64:N:0:O:0	.	3,54,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28150	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:0:T:66:N:0:O:0	.	3,53,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28151	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:3:G:0:T:66:N:0:O:1	.	3,54,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:82:C:0:G:2:T:1:N:0:O:0	.	2,26,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:68:G:0:T:2:N:0:O:0	.	2,33,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:66:G:0:T:2:N:0:O:4	.	2,34,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,43,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:110:N:0:O:0	.	0,73,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:106:G:0:T:4:N:0:O:0	.	0,81,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:3:C:0:G:69:T:0:N:0:O:1	.	3,7,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:88:G:0:T:0:N:0:O:3	.	3,46,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29194	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:87:N:0:O:1	.	2,34,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29195	G	C	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:2:G:94:T:0:N:0:O:11	.	2,37,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29215	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,46,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:39:C:0:G:1:T:0:N:0:O:1	.	1,4,0,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:1:T:0:N:0:O:1	.	1,6,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:89:T:0:N:0:O:1	.	3,26,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:84:C:0:G:2:T:0:N:0:O:4	.	2,25,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:2:C:1:G:86:T:0:N:0:O:17	.	2,37,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00070	artic-pipeline	NB04	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	298	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00070	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	140	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	95	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,10,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:2:G:0:T:54:N:0:O:1	.	0,11,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:52:G:0:T:2:N:0:O:3	.	0,12,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,16,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:123:C:0:G:4:T:0:N:0:O:0	.	4,36,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:1:T:2:N:0:O:1	.	0,43,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	0,42,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:85:N:0:O:1	.	0,49,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:35:T:0:N:0:O:1	.	1,19,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:4:C:112:G:0:T:0:N:0:O:6	.	4,100,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:115:C:0:G:0:T:3:N:0:O:5	.	3,110,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1349	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:115:G:0:T:0:N:0:O:5	.	0,37,4,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:106:G:0:T:3:N:0:O:3	.	0,36,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1696	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:91:T:2:N:0:O:1	.	0,23,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,32,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1869	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:120:G:0:T:3:N:0:O:0	.	0,39,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.08695652173913043	.	A:10:C:0:G:104:T:0:N:0:O:1	.	10,26,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	2480	A	G	G	17	accept high frequency variant	Pass	False	True	True	83	.	20	.	0.9156626506024096	.	A:1:C:0:G:76:T:0:N:0:O:6	.	23,28,53,55	134.466	1390.0	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	2558	C	T	T	17	accept high frequency variant	Pass	False	True	True	330	.	20	.	1.0	.	A:0:C:0:G:0:T:330:N:0:O:0	.	137,137,193,193	70.0	2278.0	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:0:G:145:T:0:N:0:O:1	.	2,65,1,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.02976190476190476	.	A:163:C:5:G:0:T:0:N:0:O:0	.	5,77,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.03125	.	A:150:C:0:G:5:T:0:N:0:O:5	.	5,76,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:0:G:3:T:0:N:0:O:0	.	3,32,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:69:C:2:G:0:T:0:N:0:O:0	.	0,25,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,30,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:93:T:3:N:0:O:4	.	0,62,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:3:T:0:N:0:O:1	.	3,6,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:3:T:103:N:0:O:1	.	3,8,0,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3267	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:122:G:0:T:0:N:0:O:0	.	0,44,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,47,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:0:T:88:N:0:O:1	.	0,43,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:93:C:0:G:4:T:0:N:0:O:0	.	0,46,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3367	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	0,42,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:73:G:0:T:3:N:0:O:1	.	0,29,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:78:G:0:T:5:N:0:O:1	.	0,66,5,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:83:T:2:N:0:O:5	.	2,41,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:76:T:0:N:0:O:2	.	0,42,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,59,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4174	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.016666666666666666	.	A:0:C:2:G:0:T:85:N:0:O:33	.	0,57,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:33:G:0:T:1:N:0:O:5	.	0,27,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4322	T	G	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:1:T:35:N:0:O:1	.	1,32,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.06842105263157895	.	A:0:C:0:G:169:T:13:N:0:O:8	.	0,131,13,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:0:C:0:G:136:T:4:N:0:O:22	.	0,138,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.02564102564102564	.	A:0:C:214:G:0:T:6:N:0:O:14	.	1,117,5,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:0:C:4:G:0:T:147:N:0:O:6	.	0,102,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:140:C:0:G:0:T:3:N:0:O:4	.	0,71,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:91:G:0:T:3:N:0:O:0	.	0,62,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4912	A	C	C	17	accept high frequency variant	Pass	False	True	True	143	.	20	.	1.0	.	A:0:C:143:G:0:T:0:N:0:O:0	.	65,65,78,78	70.0	2120.3	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.0364963503649635	.	A:0:C:0:G:5:T:126:N:0:O:6	.	0,66,5,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	4943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:68:G:0:T:3:N:0:O:2	.	1,60,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:84:C:0:G:0:T:3:N:0:O:0	.	3,25,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:86:G:0:T:4:N:0:O:0	.	4,27,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:91:T:0:N:0:O:2	.	3,48,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:2:G:0:T:0:N:0:O:0	.	2,46,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:88:G:0:T:5:N:0:O:2	.	0,89,5,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5742	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:2:T:0:N:0:O:1	.	2,46,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:3:G:0:T:122:N:0:O:6	.	0,99,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:66:T:0:N:0:O:0	.	3,28,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	5836	A	C	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:126:C:3:G:0:T:0:N:0:O:1	.	3,92,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,70,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.09473684210526316	.	A:0:C:86:G:0:T:9:N:0:O:0	.	0,68,9,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,59,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:90:G:0:T:3:N:0:O:2	.	0,68,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6632	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,42,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:107:G:0:T:5:N:0:O:1	.	0,80,5,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:1:G:3:T:102:N:0:O:4	.	0,80,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.09230769230769231	.	A:58:C:0:G:0:T:6:N:0:O:1	.	0,34,6,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:113:C:0:G:3:T:0:N:0:O:1	.	3,67,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	7350	C	T	C	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.022321428571428572	.	A:0:C:218:G:0:T:5:N:0:O:1	.	0,169,5,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	7592	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,44,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	7673	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	0,47,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:84:G:0:T:2:N:0:O:5	.	0,52,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	7728	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:98:G:0:T:2:N:0:O:3	.	0,48,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:102:C:4:G:0:T:0:N:0:O:0	.	0,50,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	8092	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.1223021582733813	.	A:1:C:108:G:0:T:17:N:0:O:13	.	6,55,11,84	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	8334	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,41,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,60,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	8719	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:0:T:91:N:0:O:0	.	0,62,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	8819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:115:G:0:T:4:N:0:O:0	.	4,58,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	8820	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:115:G:0:T:3:N:0:O:3	.	3,59,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.06944444444444445	.	A:5:C:1:G:64:T:0:N:0:O:2	.	5,6,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	8917	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:0:C:177:G:0:T:4:N:0:O:2	.	0,123,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:7:C:0:G:0:T:71:N:0:O:6	.	7,39,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:0:G:127:T:3:N:0:O:0	.	0,45,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	9509	A	G	N	2	allele in negative control	Alarm	False	False	False	234	.	20	.	0.021367521367521368	.	A:227:C:0:G:5:T:0:N:0:O:2	.	5,98,0,136	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	9790	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:0:G:3:T:122:N:0:O:2	.	0,86,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	9887	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:87:N:0:O:3	.	2,19,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	9888	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	2,28,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	10190	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:92:N:0:O:4	.	0,49,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	10202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:50:G:0:T:2:N:0:O:5	.	0,40,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:102:T:0:N:0:O:0	.	3,17,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:85:G:0:T:3:N:0:O:1	.	0,48,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:0:G:74:T:0:N:0:O:0	.	3,14,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:3:T:116:N:0:O:1	.	0,66,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:5:C:99:G:0:T:0:N:0:O:10	.	4,66,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	11083	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	54	.	20	.	0.48148148148148145	.	A:0:C:0:G:0:T:26:N:0:O:28	.	5,33,21,21	154.181	753.7	.	.	.	.	mixed position	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	11096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,37,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	11137	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:0:G:2:T:98:N:0:O:9	.	0,47,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.09090909090909091	.	A:0:C:87:G:0:T:9:N:0:O:3	.	0,59,9,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	11670	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:95:T:2:N:0:O:1	.	2,44,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	11671	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	2,48,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	11953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,35,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	0,28,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	11996	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:0:T:1:N:0:O:1	.	0,27,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12136	T	G	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:0:G:3:T:136:N:0:O:1	.	0,54,3,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:135:G:0:T:3:N:0:O:0	.	0,77,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:55:T:0:N:0:O:18	.	0,55,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12419	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,45,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:3:C:0:G:63:T:0:N:0:O:2	.	3,22,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.028735632183908046	.	A:5:C:0:G:169:T:0:N:0:O:0	.	5,59,0,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:77:G:0:T:4:N:0:O:6	.	0,66,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:95:G:0:T:2:N:0:O:5	.	1,38,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	12975	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:108:N:0:O:1	.	0,52,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:0:C:80:G:0:T:4:N:0:O:1	.	0,70,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.05825242718446602	.	A:6:C:0:G:89:T:0:N:0:O:8	.	6,44,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	13584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:57:G:0:T:2:N:0:O:3	.	0,34,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:102:C:0:G:4:T:0:N:0:O:0	.	4,48,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:0:N:0:O:1	.	2,29,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:82:T:0:N:0:O:1	.	3,44,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:112:C:0:G:4:T:0:N:0:O:0	.	4,49,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,42,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,43,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:99:T:0:N:0:O:0	.	4,51,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	14805	C	T	T	17	accept high frequency variant	Pass	False	True	True	130	.	20	.	0.9846153846153847	.	A:0:C:0:G:0:T:128:N:0:O:2	.	80,82,48,48	69.237	1274.5	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:115:G:0:T:3:N:0:O:6	.	0,69,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:107:T:0:N:0:O:3	.	4,47,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	15670	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:0:G:144:T:0:N:0:O:0	.	3,72,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.1	.	A:1:C:52:G:0:T:6:N:0:O:1	.	0,31,6,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:79:G:0:T:2:N:0:O:0	.	0,45,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:0:G:118:T:3:N:0:O:4	.	3,66,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:83:T:0:N:0:O:2	.	5,22,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:0:N:0:O:1	.	2,11,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:94:T:3:N:0:O:0	.	3,11,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:0:C:0:G:5:T:84:N:0:O:0	.	0,48,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.03125	.	A:5:C:0:G:119:T:0:N:0:O:36	.	0,64,5,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	16989	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,38,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17010	C	A	A	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	1.0	.	A:131:C:0:G:0:T:0:N:0:O:0	.	36,36,95,95	280.0	1702.2	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.04145077720207254	.	A:8:C:0:G:178:T:0:N:0:O:7	.	8,39,0,154	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:57:T:0:N:0:O:0	.	2,11,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:63:C:0:G:3:T:0:N:0:O:2	.	3,16,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:1:T:63:N:0:O:2	.	3,19,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,35,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:78:G:0:T:3:N:0:O:3	.	0,55,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,49,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:86:G:0:T:3:N:0:O:0	.	0,40,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.08333333333333333	.	A:0:C:65:G:0:T:6:N:0:O:1	.	0,43,6,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:89:C:0:G:0:T:5:N:0:O:11	.	0,43,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.13513513513513514	.	A:15:C:0:G:94:T:0:N:0:O:2	.	0,58,15,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:93:N:0:O:0	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:33:C:0:G:0:T:1:N:0:O:1	.	0,17,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.1076923076923077	.	A:0:C:58:G:0:T:7:N:0:O:0	.	0,50,7,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	3,37,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:0:G:2:T:60:N:0:O:1	.	0,15,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:82:G:0:T:4:N:0:O:1	.	0,28,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:88:G:0:T:3:N:0:O:10	.	0,32,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	20923	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,42,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:0:G:2:T:0:N:0:O:0	.	0,1,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:1:G:2:T:66:N:0:O:0	.	2,5,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.13636363636363635	.	A:0:C:0:G:69:T:12:N:0:O:7	.	0,56,12,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:110:G:0:T:3:N:0:O:1	.	0,61,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,52,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21575	C	T	T	12	misc mixed variant	Check	False	True	True	78	.	20	.	0.41025641025641024	.	A:0:C:0:G:4:T:32:N:0:O:42	.	3,49,29,29	23.351	1480.7	.	.	.	.	mixed position	.	strand bias: low +AF	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:2:G:1:T:0:N:0:O:0	.	1,41,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:81:G:0:T:3:N:0:O:1	.	0,24,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21743	A	C	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:118:C:3:G:1:T:0:N:0:O:1	.	0,72,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:96:G:0:T:2:N:0:O:9	.	0,76,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:0:G:135:T:0:N:0:O:0	.	4,89,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.025974025974025976	.	A:225:C:0:G:0:T:6:N:0:O:0	.	5,165,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:0:C:0:G:4:T:127:N:0:O:1	.	4,60,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	334	.	20	.	0.023952095808383235	.	A:0:C:8:G:0:T:298:N:0:O:28	.	0,265,8,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	22375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:115:C:0:G:3:T:0:N:0:O:2	.	3,54,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:36:C:0:G:1:T:0:N:0:O:2	.	0,7,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:84:N:0:O:3	.	2,24,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	272	.	20	.	0.03308823529411765	.	A:0:C:0:G:262:T:9:N:0:O:1	.	0,139,9,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:120:G:0:T:3:N:0:O:11	.	0,114,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	23144	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:0:T:2:N:0:O:0	.	2,60,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	23348	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	2,54,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:0:G:2:T:0:N:0:O:0	.	2,25,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.13924050632911392	.	A:0:C:68:G:0:T:11:N:0:O:0	.	0,54,11,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	23897	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:88:G:0:T:0:N:0:O:4	.	1,39,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:3:C:0:G:0:T:67:N:0:O:0	.	3,12,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:0:C:66:G:0:T:3:N:0:O:0	.	0,43,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,19,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:75:T:0:N:0:O:3	.	3,20,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.021052631578947368	.	A:0:C:4:G:0:T:160:N:0:O:26	.	0,136,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.03571428571428571	.	A:1:C:154:G:0:T:6:N:0:O:7	.	0,96,6,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.027624309392265192	.	A:0:C:175:G:0:T:5:N:0:O:1	.	0,121,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:1:G:2:T:95:N:0:O:0	.	0,73,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	42	.	20	.	0.07142857142857142	.	A:1:C:3:G:0:T:35:N:0:O:3	.	3,37,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:84:C:0:G:2:T:0:N:0:O:4	.	2,22,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:0:G:3:T:90:N:0:O:0	.	3,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:105:C:0:G:0:T:4:N:0:O:1	.	4,55,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:0:G:3:T:0:N:0:O:0	.	3,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:4:C:107:G:0:T:0:N:0:O:6	.	4,65,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:1:G:87:T:0:N:0:O:0	.	2,27,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:92:G:0:T:2:N:0:O:6	.	1,49,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:72:G:0:T:0:N:0:O:42	.	2,34,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.05	.	A:57:C:3:G:0:T:0:N:0:O:0	.	0,36,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:70:C:0:G:0:T:2:N:0:O:2	.	0,53,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25854	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:100:G:0:T:4:N:0:O:5	.	3,52,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:176:C:0:G:4:T:0:N:0:O:1	.	0,142,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:71:N:0:O:0	.	0,56,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26144	G	T	T	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.9850746268656716	.	A:0:C:0:G:1:T:132:N:0:O:1	.	86,88,46,46	266.713	1762.5	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	26154	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:77:C:0:G:2:T:0:N:0:O:15	.	2,43,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:99:G:0:T:3:N:0:O:2	.	0,49,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:87:G:0:T:4:N:0:O:0	.	0,46,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:101:T:0:N:0:O:0	.	3,17,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	233	.	20	.	0.02575107296137339	.	A:6:C:0:G:0:T:226:N:0:O:1	.	6,99,0,134	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:0:C:152:G:0:T:4:N:0:O:2	.	0,124,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.033783783783783786	.	A:140:C:0:G:0:T:5:N:0:O:3	.	0,75,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,71,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:82:C:0:G:0:T:2:N:0:O:3	.	2,23,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:4:C:0:G:71:T:0:N:0:O:0	.	4,11,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:83:G:0:T:3:N:0:O:0	.	0,64,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26770	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:0:T:3:N:0:O:0	.	3,64,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:88:C:0:G:3:T:2:N:0:O:0	.	3,48,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:3:G:89:T:0:N:0:O:0	.	3,30,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:73:T:0:N:0:O:0	.	2,17,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.11538461538461539	.	A:0:C:68:G:0:T:9:N:0:O:1	.	0,57,9,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,50,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:90:N:0:O:1	.	0,44,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:2:T:0:N:0:O:1	.	2,26,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:84:G:0:T:0:N:0:O:1	.	3,50,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:112:C:0:G:0:T:3:N:0:O:28	.	3,88,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:77:T:0:N:0:O:3	.	2,14,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,30,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:1:T:92:N:0:O:8	.	0,65,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:79:G:0:T:2:N:0:O:3	.	0,68,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	2,63,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:94:G:0:T:0:N:0:O:10	.	3,75,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:67:G:0:T:2:N:0:O:8	.	2,38,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:0:C:0:G:3:T:127:N:0:O:22	.	0,95,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28684	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:93:C:0:G:0:T:2:N:0:O:3	.	0,41,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28719	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:4:C:0:G:188:T:0:N:0:O:0	.	4,54,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:64:G:0:T:2:N:0:O:3	.	0,25,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.04878048780487805	.	A:0:C:39:G:0:T:2:N:0:O:0	.	0,23,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:69:G:0:T:2:N:0:O:5	.	0,26,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:1:C:115:G:0:T:3:N:0:O:1	.	0,84,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:67:T:0:N:0:O:4	.	3,7,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:5:C:0:G:97:T:0:N:0:O:5	.	5,24,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:105:T:0:N:0:O:21	.	3,47,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:2:T:0:N:0:O:1	.	2,18,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00072	artic-pipeline	NB06	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	294	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	10981	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00072	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	145	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	15	.	20	.	0.9333333333333333	.	A:0:C:0:G:0:T:14:N:0:O:1	.	7,8,7,7	61.455	1303.1	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:3:G:0:T:80:N:0:O:0	.	0,38,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	522	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,41,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:1:C:0:G:49:T:0:N:0:O:2	.	1,16,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	1.0	.	A:0:C:0:G:0:T:140:N:0:O:0	.	99,99,41,41	70.0	1552.2	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:123:G:0:T:0:N:0:O:4	.	3,87,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	0,6,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:53:T:0:N:0:O:22	.	1,15,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02702702702702703	.	A:144:C:0:G:0:T:4:N:0:O:0	.	4,24,0,124	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.03289473684210526	.	A:0:C:146:G:5:T:0:N:0:O:1	.	5,26,0,126	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:1:T:3:N:0:O:0	.	0,35,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:5:G:0:T:88:N:0:O:0	.	0,34,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0189873417721519	.	A:3:C:106:G:0:T:0:N:0:O:49	.	0,50,3,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:4:G:0:T:105:N:0:O:3	.	0,38,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	1817	A	G	G	14	new position at high frequency	Pass	False	True	True	110	.	20	.	0.9363636363636364	.	A:4:C:0:G:103:T:0:N:0:O:3	.	12,13,91,97	348.474	1767.1	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:70:C:3:G:0:T:0:N:0:O:0	.	0,39,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:0:T:79:N:0:O:0	.	0,52,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:92:T:0:N:0:O:3	.	0,23,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:72:G:0:T:3:N:0:O:0	.	0,55,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:0:C:73:G:0:T:5:N:0:O:2	.	0,66,5,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	2839	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:4:G:0:T:88:N:0:O:2	.	0,68,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	2841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,61,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	124	.	20	.	0.6774193548387096	.	A:0:C:0:G:0:T:84:N:0:O:40	.	49,89,35,35	193.159	1495.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:97:T:2:N:0:O:0	.	0,46,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:4:G:0:T:111:N:0:O:1	.	0,67,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:1:C:92:G:0:T:4:N:0:O:0	.	0,54,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,72,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:0:C:0:G:194:T:5:N:0:O:7	.	0,153,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	4486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,34,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	5259	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:97:G:0:T:2:N:0:O:3	.	0,51,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:111:T:0:N:0:O:0	.	3,56,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:0:C:61:G:0:T:3:N:0:O:0	.	0,59,3,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:108:G:0:T:3:N:0:O:1	.	0,58,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:73:G:0:T:2:N:0:O:2	.	0,56,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.08139534883720931	.	A:0:C:77:G:0:T:7:N:0:O:2	.	0,45,7,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:81:T:2:N:0:O:1	.	0,15,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	0,41,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:86:N:0:O:3	.	0,50,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:87:G:0:T:2:N:0:O:4	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6428	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	1,15,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:83:G:0:T:2:N:0:O:3	.	2,51,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.02727272727272727	.	A:202:C:0:G:6:T:3:N:0:O:9	.	6,89,0,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.025906735751295335	.	A:0:C:180:G:0:T:5:N:0:O:8	.	0,112,5,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:0:G:128:T:3:N:0:O:2	.	0,48,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	7031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	0,41,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.09859154929577464	.	A:61:C:0:G:0:T:7:N:0:O:3	.	0,44,7,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:5:C:0:G:91:T:0:N:0:O:3	.	5,44,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:78:G:0:T:3:N:0:O:6	.	0,54,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:2:G:0:T:91:N:0:O:11	.	0,50,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	7815	C	A	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:77:G:0:T:0:N:0:O:0	.	0,47,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:92:C:2:G:0:T:0:N:0:O:3	.	0,58,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	8345	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	0,57,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:103:T:0:N:0:O:2	.	3,30,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:67:G:0:T:2:N:0:O:2	.	2,12,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:3:C:0:G:67:T:0:N:0:O:2	.	3,8,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:0:G:126:T:0:N:0:O:10	.	3,58,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.03676470588235294	.	A:5:C:1:G:0:T:124:N:0:O:6	.	5,71,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:4:C:0:G:135:T:0:N:0:O:1	.	4,64,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,49,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9313	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:109:C:0:G:3:T:0:N:0:O:3	.	3,48,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:72:G:0:T:2:N:0:O:1	.	0,29,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9502	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:90:G:0:T:2:N:0:O:5	.	0,70,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9541	C	T	N	2	allele in negative control	Alarm	False	False	False	156	.	20	.	0.03205128205128205	.	A:0:C:151:G:0:T:5:N:0:O:0	.	0,111,5,45	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9542	T	C	N	2	allele in negative control	Alarm	False	False	False	157	.	20	.	0.025477707006369428	.	A:1:C:4:G:0:T:149:N:0:O:3	.	0,108,4,49	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9714	C	T	N	2	allele in negative control	Alarm	False	False	False	66	.	20	.	0.030303030303030304	.	A:0:C:56:G:0:T:2:N:0:O:8	.	0,41,2,25	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9791	G	A	N	2	allele in negative control	Alarm	False	False	False	89	.	20	.	0.0449438202247191	.	A:4:C:0:G:82:T:0:N:0:O:3	.	0,44,4,45	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,39,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9948	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	0,41,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.06493506493506493	.	A:5:C:0:G:72:T:0:N:0:O:0	.	5,17,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:89:G:0:T:4:N:0:O:9	.	4,32,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:99:C:0:G:4:T:0:N:0:O:1	.	4,48,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	10227	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:91:N:0:O:0	.	0,50,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	10228	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:100:G:0:T:3:N:0:O:0	.	0,50,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,34,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	10807	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:92:C:2:G:0:T:0:N:0:O:5	.	0,74,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:0:G:4:T:110:N:0:O:4	.	0,68,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:90:G:0:T:0:N:0:O:13	.	3,57,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	11074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.017543859649122806	.	A:0:C:30:G:0:T:1:N:0:O:26	.	0,45,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	11133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:84:G:0:T:2:N:0:O:14	.	0,25,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:0:C:90:G:0:T:6:N:0:O:1	.	0,64,6,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:48:C:0:G:2:T:0:N:0:O:0	.	0,33,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	1,37,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	12369	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:0:T:2:N:0:O:2	.	0,47,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:84:T:0:N:0:O:3	.	4,27,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:97:G:0:T:0:N:0:O:1	.	0,54,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:0:C:74:G:0:T:6:N:0:O:1	.	0,55,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:92:C:0:G:2:T:0:N:0:O:5	.	2,32,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:0:T:108:N:0:O:3	.	3,35,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:130:G:0:T:4:N:0:O:4	.	0,64,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.09195402298850575	.	A:0:C:79:G:0:T:8:N:0:O:0	.	0,77,8,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:78:T:0:N:0:O:8	.	3,41,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:84:G:0:T:0:N:0:O:8	.	3,49,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	13970	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,30,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	14166	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:132:T:0:N:0:O:2	.	3,65,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	14362	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:130:G:0:T:3:N:0:O:5	.	1,64,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:0:C:0:G:0:T:115:N:0:O:0	.	56,56,59,59	332.911	1328.5	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:2:T:0:N:0:O:1	.	2,41,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:94:T:0:N:0:O:1	.	4,29,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:2:G:0:T:57:N:0:O:3	.	0,55,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	15380	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:4:C:0:G:108:T:0:N:0:O:1	.	4,69,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:135:C:0:G:3:T:0:N:0:O:1	.	3,107,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.08974358974358974	.	A:0:C:71:G:0:T:7:N:0:O:0	.	0,46,7,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:0:C:135:G:0:T:4:N:0:O:2	.	0,85,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:3:T:0:N:0:O:0	.	2,42,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:0:G:2:T:80:N:0:O:1	.	2,18,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:92:T:2:N:0:O:1	.	0,26,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:110:T:3:N:0:O:5	.	3,52,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:109:G:0:T:3:N:0:O:0	.	0,64,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,12,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:4:T:102:N:0:O:0	.	1,63,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:4:C:0:G:124:T:0:N:0:O:38	.	1,86,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	0,34,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:103:T:0:N:0:O:0	.	4,38,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:74:C:3:G:0:T:0:N:0:O:0	.	3,39,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:46:C:0:G:1:T:0:N:0:O:1	.	1,10,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0446927374301676	.	A:8:C:0:G:165:T:0:N:0:O:6	.	8,47,0,132	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.06349206349206349	.	A:58:C:0:G:4:T:0:N:0:O:1	.	4,16,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.09090909090909091	.	A:6:C:0:G:0:T:58:N:0:O:2	.	6,18,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:93:C:0:G:4:T:0:N:0:O:0	.	4,50,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17337	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:111:C:4:G:0:T:0:N:0:O:0	.	4,66,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:84:G:0:T:4:N:0:O:0	.	0,47,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	2,26,1,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:89:G:0:T:3:N:0:O:2	.	0,39,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.021052631578947368	.	A:0:C:182:G:0:T:4:N:0:O:4	.	2,98,2,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.08536585365853659	.	A:0:C:73:G:0:T:7:N:0:O:2	.	0,56,7,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:92:C:0:G:0:T:4:N:0:O:11	.	0,54,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.061946902654867256	.	A:7:C:0:G:105:T:0:N:0:O:1	.	0,74,7,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:86:C:0:G:2:T:0:N:0:O:5	.	2,35,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:4:C:0:G:77:T:0:N:0:O:0	.	4,31,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.019801980198019802	.	A:4:C:0:G:196:T:0:N:0:O:2	.	4,85,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:83:N:0:O:0	.	1,25,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,20,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:38:C:0:G:0:T:1:N:0:O:3	.	0,19,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	18782	G	T	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:0:G:115:T:3:N:0:O:19	.	1,66,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	18978	A	G	A	16	ignore low frequency variant	Pass	False	False	True	247	.	20	.	0.020242914979757085	.	A:242:C:0:G:5:T:0:N:0:O:0	.	4,106,1,141	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	18989	T	A	T	16	ignore low frequency variant	Pass	False	False	True	245	.	20	.	0.02857142857142857	.	A:7:C:1:G:0:T:237:N:0:O:0	.	7,113,0,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.04807692307692308	.	A:10:C:0:G:197:T:0:N:0:O:1	.	10,51,0,157	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	19454	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:57:G:0:T:2:N:0:O:3	.	0,28,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.08823529411764706	.	A:0:C:30:G:0:T:3:N:0:O:1	.	0,28,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:137:C:0:G:0:T:4:N:0:O:1	.	0,53,4,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:0:G:4:T:68:N:0:O:1	.	0,32,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,34,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:94:C:0:G:2:T:0:N:0:O:4	.	2,47,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:193:C:0:G:4:T:0:N:0:O:0	.	4,50,0,147	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:81:C:0:G:4:T:0:N:0:O:0	.	0,0,4,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:4:C:0:G:117:T:0:N:0:O:13	.	0,20,4,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:0:G:73:T:5:N:0:O:13	.	0,62,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:91:G:0:T:3:N:0:O:2	.	0,48,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:79:T:0:N:0:O:2	.	4,20,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:1:G:2:T:86:N:0:O:1	.	2,38,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:91:G:0:T:4:N:0:O:8	.	3,30,1,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.023529411764705882	.	A:4:C:0:G:157:T:0:N:0:O:9	.	4,82,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:4:T:101:N:0:O:1	.	2,45,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:1:C:0:G:143:T:3:N:0:O:0	.	2,71,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:196:C:0:G:4:T:0:N:0:O:1	.	4,93,0,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.04878048780487805	.	A:8:C:0:G:156:T:0:N:0:O:0	.	8,89,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	22361	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:38:T:0:N:0:O:0	.	0,15,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22378	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:36:N:0:O:1	.	0,17,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22390	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,15,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22408	T	A	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:0:T:47:N:0:O:0	.	0,19,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22413	C	A	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:45:G:0:T:0:N:0:O:0	.	0,18,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22465	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:0:T:35:N:0:O:1	.	0,15,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22467	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,15,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22501	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,19,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22508	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.05405405405405406	.	A:2:C:0:G:0:T:33:N:0:O:2	.	2,21,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22519	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,11,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.019801980198019802	.	A:0:C:0:G:195:T:4:N:0:O:3	.	0,89,4,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	227	.	20	.	0.01762114537444934	.	A:0:C:0:G:4:T:186:N:0:O:37	.	0,115,4,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.01935483870967742	.	A:0:C:135:G:0:T:3:N:0:O:17	.	0,121,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.917910447761194	.	A:0:C:0:G:123:T:1:N:0:O:10	.	48,59,75,75	274.466	1616.4	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:73:T:0:N:0:O:7	.	4,25,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:0:G:3:T:0:N:0:O:0	.	3,16,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:0:C:77:G:0:T:6:N:0:O:0	.	0,53,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:3:G:0:T:95:N:0:O:0	.	0,55,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.051094890510948905	.	A:130:C:0:G:0:T:7:N:0:O:0	.	5,55,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.09210526315789473	.	A:7:C:0:G:0:T:69:N:0:O:0	.	5,20,2,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,13,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:73:G:0:T:3:N:0:O:0	.	0,48,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:1:C:60:G:0:T:2:N:0:O:10	.	0,66,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:73:T:0:N:0:O:2	.	3,10,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	2,28,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24433	A	T	A	16	ignore low frequency variant	Pass	False	False	True	237	.	20	.	0.02109704641350211	.	A:232:C:0:G:0:T:5:N:0:O:0	.	0,112,5,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:1:C:82:G:0:T:3:N:0:O:3	.	0,32,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:78:G:0:T:3:N:0:O:3	.	0,54,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,40,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	49	.	20	.	0.061224489795918366	.	A:0:C:3:G:0:T:46:N:0:O:0	.	3,40,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	25132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:101:G:0:T:4:N:0:O:1	.	0,21,4,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:122:C:0:G:0:T:3:N:0:O:1	.	3,48,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:95:G:0:T:2:N:0:O:6	.	0,80,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:0:C:0:G:4:T:126:N:0:O:5	.	4,50,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	145	.	20	.	1.0	.	A:0:C:0:G:0:T:145:N:0:O:0	.	58,58,87,87	210.0	2246.2	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:80:C:4:G:0:T:0:N:0:O:0	.	3,37,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:2:G:0:T:60:N:0:O:0	.	1,56,1,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:76:G:0:T:0:N:0:O:49	.	1,45,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:46:C:3:G:0:T:0:N:0:O:3	.	0,35,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:97:G:0:T:3:N:0:O:0	.	0,63,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:98:C:0:G:3:T:0:N:0:O:3	.	3,43,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:76:C:0:G:4:T:0:N:0:O:0	.	4,24,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25892	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:91:N:0:O:1	.	2,29,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,30,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,54,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:0:T:3:N:0:O:1	.	0,80,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:84:T:0:N:0:O:2	.	3,36,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:72:T:0:N:0:O:0	.	4,29,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.03208556149732621	.	A:0:C:180:G:0:T:6:N:0:O:1	.	0,165,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:4:G:0:T:105:N:0:O:0	.	0,75,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:0:T:2:N:0:O:1	.	2,26,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:5:C:0:G:75:T:0:N:0:O:0	.	5,11,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26768	C	T	T	14	new position at high frequency	Pass	False	True	True	134	.	20	.	0.9850746268656716	.	A:0:C:0:G:0:T:132:N:0:O:2	.	73,75,59,59	350.0	1569.9	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:95:G:1:T:2:N:0:O:2	.	0,55,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:87:C:0:G:0:T:2:N:0:O:3	.	0,50,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.08	.	A:6:C:0:G:69:T:0:N:0:O:0	.	6,20,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27098	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,44,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:0:C:74:G:0:T:5:N:0:O:1	.	0,57,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:0:T:102:N:0:O:0	.	0,44,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	0,55,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0228310502283105	.	A:213:C:0:G:0:T:5:N:0:O:1	.	1,70,4,149	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,35,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:92:G:1:T:0:N:0:O:1	.	4,54,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.031055900621118012	.	A:124:C:0:G:0:T:5:N:0:O:32	.	4,101,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:69:C:0:G:2:T:0:N:0:O:0	.	2,4,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:80:T:0:N:0:O:4	.	3,13,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:1:C:0:G:2:T:85:N:0:O:3	.	2,55,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:94:C:0:G:0:T:3:N:0:O:1	.	3,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:102:G:0:T:0:N:0:O:6	.	3,80,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28508	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:99:C:0:G:3:T:0:N:0:O:0	.	3,57,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28588	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:0:G:2:T:78:N:0:O:4	.	2,37,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:66:C:2:G:3:T:0:N:0:O:0	.	3,30,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.014925373134328358	.	A:2:C:93:G:0:T:0:N:0:O:39	.	1,85,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,28,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,24,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:62:G:0:T:3:N:0:O:8	.	0,21,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	114	.	20	.	0.017543859649122806	.	A:0:C:110:G:0:T:2:N:0:O:2	.	0,92,2,22	.	76.4	.	.	.	mismatch(n)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29055	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:1:G:0:T:0:N:0:O:0	.	1,15,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29056	A	T	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:0:T:1:N:0:O:0	.	1,2,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29090	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,43,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29195	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:0:G:108:T:3:N:0:O:21	.	1,59,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:96:G:3:T:0:N:0:O:2	.	1,49,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29378	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:80:C:2:G:0:T:1:N:0:O:1	.	0,36,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:51:C:0:G:2:T:0:N:0:O:3	.	0,4,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:1:C:3:G:93:T:0:N:0:O:4	.	3,37,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:2:T:0:N:0:O:0	.	2,39,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00073	artic-pipeline	NB07	MN908947.3	226	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	191	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	227	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	191	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	228	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	191	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00073	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	65	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,5,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	67	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:0:T:39:N:0:O:6	.	0,5,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	75	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:45:G:0:T:1:N:0:O:6	.	0,6,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:2:C:0:G:0:T:40:N:0:O:5	.	0,6,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:37:C:0:G:0:T:1:N:0:O:1	.	0,7,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	98	C	A	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:38:G:0:T:0:N:0:O:4	.	0,5,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	102	G	C	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:43:T:0:N:0:O:0	.	0,5,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	105	G	T	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:0:G:48:T:1:N:0:O:0	.	0,5,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	0,6,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	142	A	C	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:1:G:0:T:0:N:0:O:1	.	0,6,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	164	C	A	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:1:C:49:G:0:T:0:N:0:O:2	.	0,5,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.058823529411764705	.	A:0:C:30:G:0:T:2:N:0:O:2	.	0,8,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	47	.	20	.	1.0	.	A:0:C:0:G:0:T:47:N:0:O:0	.	4,4,43,43	140.0	1471.6	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	277	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,4,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	286	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,5,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	304	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,4,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,19,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:101:N:0:O:2	.	0,44,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	746	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:0:C:4:G:0:T:119:N:0:O:11	.	0,69,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	831	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:68:C:0:G:2:T:0:N:0:O:3	.	2,9,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	916	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:118:C:1:G:3:T:0:N:0:O:0	.	3,49,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:0:G:51:T:0:N:0:O:1	.	2,18,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1048	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,49,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	156	.	20	.	1.0	.	A:0:C:0:G:0:T:156:N:0:O:0	.	118,118,38,38	70.0	1789.7	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:3:C:0:G:49:T:0:N:0:O:16	.	1,18,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	0,64,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:0:G:45:T:0:N:0:O:7	.	2,23,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1189	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:2:G:0:T:1:N:0:O:0	.	2,67,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:95:G:0:T:4:N:0:O:0	.	0,44,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1828	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	0,57,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.08843537414965986	.	A:13:C:0:G:132:T:0:N:0:O:2	.	12,37,1,110	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	2303	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:70:C:0:G:0:T:2:N:0:O:8	.	0,47,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	2304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:69:C:0:G:0:T:2:N:0:O:8	.	0,48,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:112:C:4:G:0:T:0:N:0:O:0	.	4,35,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:87:T:0:N:0:O:1	.	0,21,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	2625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.02074688796680498	.	A:5:C:0:G:233:T:0:N:0:O:3	.	5,123,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	128	.	20	.	0.6875	.	A:0:C:0:G:0:T:88:N:0:O:40	.	37,77,51,51	60.206	1338.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:0:G:71:T:5:N:0:O:21	.	0,59,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:117:C:0:G:3:T:0:N:0:O:3	.	3,11,0,112	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:0:T:108:N:0:O:0	.	0,49,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,46,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:56:C:0:G:1:T:3:N:0:O:1	.	3,25,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	3414	A	T	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:0:T:2:N:0:O:0	.	1,22,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	3417	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:0:T:1:N:0:O:0	.	0,1,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	0,56,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	0,57,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:72:G:0:T:2:N:0:O:2	.	0,67,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:44:G:0:T:1:N:0:O:3	.	0,36,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:84:C:0:G:2:T:0:N:0:O:2	.	1,18,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.037037037037037035	.	A:1:C:0:G:145:T:6:N:0:O:10	.	0,129,6,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:95:C:0:G:0:T:3:N:0:O:7	.	0,58,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	4614	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:93:N:0:O:3	.	2,52,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:119:G:0:T:3:N:0:O:5	.	0,108,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:0:T:132:N:0:O:9	.	1,68,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5241	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	2,51,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:97:C:0:G:2:T:0:N:0:O:4	.	2,42,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:4:G:0:T:92:N:0:O:0	.	1,61,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,42,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:104:G:0:T:4:N:0:O:1	.	0,62,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.109375	.	A:0:C:56:G:0:T:7:N:0:O:1	.	0,53,7,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:83:N:0:O:1	.	0,52,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5821	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:99:C:0:G:3:T:0:N:0:O:0	.	3,37,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:2:C:0:G:97:T:0:N:0:O:11	.	0,25,2,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:96:G:0:T:2:N:0:O:7	.	1,85,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.07526881720430108	.	A:1:C:85:G:0:T:7:N:0:O:0	.	0,70,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:113:G:0:T:5:N:0:O:2	.	0,77,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:87:T:0:N:0:O:3	.	2,31,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6317	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:1:C:123:G:0:T:3:N:0:O:0	.	0,76,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:71:G:0:T:2:N:0:O:3	.	2,41,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.03488372093023256	.	A:159:C:0:G:6:T:0:N:0:O:7	.	6,70,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:0:C:176:G:0:T:4:N:0:O:5	.	1,126,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6878	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:97:C:0:G:2:T:0:N:0:O:6	.	2,39,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:1:N:0:O:0	.	2,22,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:69:C:0:G:0:T:2:N:0:O:1	.	0,47,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7332	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:142:N:0:O:0	.	0,62,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7423	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:110:G:0:T:3:N:0:O:4	.	0,78,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:7:C:0:G:76:T:0:N:0:O:2	.	7,31,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.05454545454545454	.	A:52:C:3:G:0:T:0:N:0:O:0	.	3,20,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:48:C:0:G:3:T:0:N:0:O:1	.	3,14,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7864	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	1,11,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7905	C	A	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:68:G:0:T:0:N:0:O:8	.	1,40,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7906	A	C	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:67:C:2:G:0:T:0:N:0:O:0	.	2,36,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7939	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:43:N:0:O:2	.	0,31,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:44:C:0:G:2:T:0:N:0:O:1	.	2,16,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:131:N:0:O:0	.	0,76,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	8507	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	2,53,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	8508	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,52,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:3:G:0:T:83:N:0:O:0	.	0,58,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	8830	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:95:N:0:O:2	.	0,48,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:0:G:74:T:0:N:0:O:0	.	3,6,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:2:G:0:T:58:N:0:O:0	.	2,22,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.03333333333333333	.	A:5:C:0:G:145:T:0:N:0:O:0	.	5,45,0,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	9313	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:102:C:0:G:4:T:1:N:0:O:7	.	4,53,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:90:G:0:T:3:N:0:O:0	.	0,64,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:0:T:113:N:0:O:0	.	0,63,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	9627	C	T	N	2	allele in negative control	Alarm	False	False	False	114	.	20	.	0.02631578947368421	.	A:0:C:86:G:0:T:3:N:0:O:25	.	1,109,2,5	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	9752	A	G	N	2	allele in negative control	Alarm	False	False	False	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,56,0,44	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:84:T:0:N:0:O:1	.	3,16,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:97:G:0:T:3:N:0:O:13	.	3,25,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:112:C:0:G:3:T:0:N:0:O:2	.	3,45,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10098	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:0:G:135:T:3:N:0:O:1	.	3,42,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10113	T	C	T	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.024896265560165973	.	A:0:C:6:G:0:T:234:N:0:O:1	.	0,109,6,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0759493670886076	.	A:0:C:72:G:0:T:6:N:0:O:1	.	0,40,6,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	10528	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,24,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,22,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10684	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	0,47,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.02631578947368421	.	A:0:C:5:G:0:T:184:N:0:O:1	.	0,116,5,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:96:G:0:T:4:N:0:O:1	.	0,65,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:0:G:4:T:104:N:0:O:3	.	0,59,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:94:G:0:T:0:N:0:O:8	.	1,54,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11108	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:1:N:0:O:1	.	0,62,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:107:C:0:G:0:T:3:N:0:O:2	.	3,66,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:94:G:0:T:3:N:0:O:3	.	0,58,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11687	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,67,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11758	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:89:G:0:T:1:N:0:O:8	.	2,62,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11800	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:0:G:94:T:2:N:0:O:0	.	2,51,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11821	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:1:C:2:G:0:T:85:N:0:O:0	.	0,49,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,63,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:0:T:2:N:0:O:0	.	0,58,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	11996	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:2:T:0:N:0:O:1	.	0,58,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:2:C:0:G:86:T:0:N:0:O:26	.	0,72,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	12420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:84:G:0:T:4:N:0:O:11	.	0,63,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.06976744186046512	.	A:6:C:0:G:76:T:0:N:0:O:4	.	6,27,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:68:G:0:T:2:N:0:O:4	.	0,44,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:101:G:0:T:0:N:0:O:2	.	0,65,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.1	.	A:0:C:72:G:0:T:8:N:0:O:0	.	0,66,8,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:105:C:0:G:4:T:0:N:0:O:1	.	3,34,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:76:T:0:N:0:O:5	.	2,23,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13124	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:1:G:97:T:2:N:0:O:3	.	1,43,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13451	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:132:T:0:N:0:O:5	.	3,81,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13484	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:49:T:0:N:0:O:0	.	1,42,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:5:C:0:G:64:T:0:N:0:O:5	.	5,30,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:86:G:0:T:0:N:0:O:8	.	2,45,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:108:T:0:N:0:O:4	.	4,28,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,30,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:90:T:0:N:0:O:3	.	2,8,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:49:C:0:G:2:T:0:N:0:O:1	.	0,3,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:96:T:0:N:0:O:1	.	3,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:91:T:0:N:0:O:3	.	2,38,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	96	.	20	.	0.9895833333333334	.	A:0:C:1:G:0:T:95:N:0:O:0	.	56,56,39,40	193.703	1277.1	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:107:G:0:T:3:N:0:O:1	.	0,66,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:96:C:0:G:2:T:0:N:0:O:3	.	2,46,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:90:T:0:N:0:O:1	.	5,22,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,26,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:2:G:0:T:67:N:0:O:1	.	0,57,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15103	C	G	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:81:G:2:T:0:N:0:O:1	.	0,60,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15146	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:118:T:0:N:0:O:0	.	3,42,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15175	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:0:T:3:N:0:O:0	.	0,56,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:1:C:0:G:96:T:2:N:0:O:0	.	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:98:G:0:T:3:N:0:O:2	.	0,67,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	15760	G	A	A	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:114:C:0:G:0:T:0:N:0:O:0	.	54,54,60,60	70.0	1681.2	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.0847457627118644	.	A:0:C:54:G:0:T:5:N:0:O:0	.	0,34,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	16394	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,55,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16531	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:45:T:0:N:0:O:0	.	0,22,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16550	A	C	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:1:G:0:T:0:N:0:O:0	.	1,25,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16560	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	0,22,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16562	T	G	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:1:T:47:N:0:O:0	.	1,22,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:40:N:0:O:1	.	0,32,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16649	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,27,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:46:G:0:T:1:N:0:O:3	.	0,30,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16686	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:2:G:0:T:43:N:0:O:0	.	0,21,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16688	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,20,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16699	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.01818181818181818	.	A:0:C:49:G:0:T:1:N:0:O:5	.	0,28,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16716	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:47:G:0:T:1:N:0:O:2	.	0,26,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16717	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:0:T:1:N:0:O:0	.	1,15,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16751	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:47:G:0:T:1:N:0:O:0	.	0,22,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:2:T:0:N:0:O:0	.	0,28,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	16852	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:0:N:0:O:1	.	1,10,1,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:2:G:0:T:0:N:0:O:0	.	2,36,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.07575757575757576	.	A:59:C:0:G:5:T:0:N:0:O:2	.	5,11,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.07246376811594203	.	A:5:C:0:G:0:T:59:N:0:O:5	.	5,16,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:97:C:0:G:4:T:0:N:0:O:0	.	4,39,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:84:G:0:T:5:N:0:O:2	.	0,64,5,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	17535	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:97:N:0:O:2	.	2,28,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:96:T:0:N:0:O:1	.	4,33,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:108:G:0:T:4:N:0:O:0	.	0,70,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:88:G:0:T:3:N:0:O:2	.	0,55,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:0:T:118:N:0:O:17	.	0,59,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.03608247422680412	.	A:0:C:184:G:0:T:7:N:0:O:3	.	2,116,5,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:0:C:147:G:0:T:4:N:0:O:3	.	1,110,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:0:C:73:G:0:T:4:N:0:O:0	.	0,48,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:101:C:0:G:1:T:4:N:0:O:10	.	0,54,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05982905982905983	.	A:7:C:0:G:110:T:0:N:0:O:0	.	0,67,7,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:0:T:96:N:0:O:10	.	3,41,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:119:G:0:T:4:N:0:O:0	.	0,80,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:0:G:4:T:84:N:0:O:0	.	4,24,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:94:G:0:T:2:N:0:O:4	.	2,23,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:74:C:0:G:2:T:0:N:0:O:1	.	2,33,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,34,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:64:T:0:N:0:O:0	.	2,19,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	19675	C	A	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:116:G:0:T:0:N:0:O:2	.	0,64,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.01818181818181818	.	A:3:C:0:G:0:T:135:N:0:O:27	.	0,77,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:0:T:3:N:0:O:0	.	0,70,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,58,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:0:G:137:T:0:N:0:O:9	.	3,95,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:126:C:0:G:5:T:0:N:0:O:1	.	5,81,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,25,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21060	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:0:C:4:G:0:T:122:N:0:O:2	.	0,51,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:2:T:0:N:0:O:0	.	0,2,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:99:T:0:N:0:O:10	.	0,12,3,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:0:G:2:T:66:N:0:O:1	.	2,8,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:0:G:46:T:2:N:0:O:4	.	0,36,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:0:T:2:N:0:O:1	.	0,45,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:77:G:0:T:3:N:0:O:1	.	1,67,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	1,5,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.0967741935483871	.	A:6:C:0:G:53:T:0:N:0:O:3	.	6,26,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21505	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:64:C:0:G:2:T:0:N:0:O:2	.	1,44,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21558	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	3,55,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:90:C:0:G:5:T:0:N:0:O:0	.	5,54,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21645	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,72,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.03825136612021858	.	A:0:C:166:G:0:T:7:N:0:O:10	.	4,43,3,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.019417475728155338	.	A:0:C:189:G:0:T:4:N:0:O:13	.	0,147,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:0:C:4:G:0:T:184:N:0:O:1	.	0,138,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	262	.	20	.	0.03816793893129771	.	A:10:C:0:G:237:T:0:N:0:O:15	.	10,106,0,156	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:1:T:0:N:0:O:0	.	1,13,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22342	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:32:N:0:O:2	.	0,19,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:23:T:0:N:0:O:0	.	1,11,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22378	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,20,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:1:T:0:N:0:O:0	.	1,17,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22381	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	1,21,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22493	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:20:T:0:N:0:O:0	.	1,4,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22505	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:36:C:0:G:1:T:0:N:0:O:1	.	1,20,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22529	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,12,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22534	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,16,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:82:N:0:O:1	.	0,79,2,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.02197802197802198	.	A:0:C:0:G:178:T:4:N:0:O:0	.	0,90,4,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.029585798816568046	.	A:0:C:0:G:5:T:138:N:0:O:26	.	0,100,5,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:3:G:0:T:132:N:0:O:3	.	0,84,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	22988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:3:C:1:G:146:T:0:N:0:O:0	.	3,71,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.946969696969697	.	A:0:C:0:G:125:T:0:N:0:O:7	.	67,74,58,58	346.227	1564.1	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,26,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	23566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:2:T:0:N:0:O:0	.	2,19,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:82:C:0:G:3:T:0:N:0:O:0	.	3,40,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.07954545454545454	.	A:0:C:81:G:0:T:7:N:0:O:0	.	0,55,7,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:4:G:0:T:101:N:0:O:0	.	0,54,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:0:T:81:N:0:O:0	.	2,10,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,14,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:53:G:0:T:2:N:0:O:7	.	0,55,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,17,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:121:G:0:T:3:N:0:O:0	.	0,74,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:91:T:0:N:0:O:11	.	3,41,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.058823529411764705	.	A:96:C:0:G:6:T:0:N:0:O:0	.	6,39,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:5:C:0:G:92:T:0:N:0:O:2	.	0,63,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:0:G:3:T:91:N:0:O:2	.	0,65,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	33	.	20	.	0.12121212121212122	.	A:0:C:4:G:0:T:29:N:0:O:0	.	4,28,0,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	25105	A	C	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:34:C:1:G:0:T:0:N:0:O:1	.	0,2,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:98:C:0:G:2:T:0:N:0:O:4	.	2,25,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:0:C:0:G:5:T:102:N:0:O:0	.	5,33,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25460	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:121:G:0:T:3:N:0:O:0	.	0,65,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:94:G:0:T:2:N:0:O:4	.	1,73,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:0:G:5:T:108:N:0:O:1	.	5,44,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	1.0	.	A:0:C:0:G:0:T:133:N:0:O:0	.	62,62,71,71	210.0	2118.8	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:76:T:0:N:0:O:3	.	2,11,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:81:G:0:T:2:N:0:O:7	.	2,44,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.05084745762711865	.	A:55:C:3:G:0:T:0:N:0:O:1	.	1,37,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25845	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:92:N:0:O:3	.	0,71,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:72:N:0:O:1	.	0,48,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:87:C:0:G:2:T:0:N:0:O:4	.	2,30,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:0:G:3:T:0:N:0:O:0	.	3,42,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:3:T:0:N:0:O:1	.	3,40,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,34,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26268	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:4:C:0:G:165:T:0:N:0:O:20	.	4,78,0,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:84:G:0:T:4:N:0:O:33	.	1,109,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26533	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:86:G:0:T:2:N:0:O:2	.	2,31,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,27,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.045714285714285714	.	A:0:C:167:G:0:T:8:N:0:O:0	.	0,130,8,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.039603960396039604	.	A:0:C:8:G:0:T:194:N:0:O:0	.	0,137,8,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,46,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,5,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.08860759493670886	.	A:0:C:72:G:0:T:7:N:0:O:0	.	0,45,7,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,38,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26910	A	T	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:72:C:0:G:0:T:2:N:0:O:3	.	2,18,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,53,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:85:C:0:G:2:T:0:N:0:O:15	.	2,34,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.09722222222222222	.	A:0:C:63:G:0:T:7:N:0:O:2	.	0,57,7,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:71:G:0:T:3:N:0:O:0	.	0,59,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	27108	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:0:G:2:T:70:N:0:O:0	.	0,50,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	27161	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,55,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	27584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:89:G:0:T:2:N:0:O:21	.	0,56,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:83:T:0:N:0:O:5	.	2,15,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:77:N:0:O:7	.	0,46,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:78:G:0:T:2:N:0:O:4	.	0,54,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:80:C:0:G:2:T:0:N:0:O:3	.	2,22,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.01694915254237288	.	A:2:C:83:G:0:T:0:N:0:O:33	.	1,56,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:40:C:1:G:0:T:0:N:0:O:2	.	1,6,0,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:1:C:3:G:89:T:0:N:0:O:4	.	1,41,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:41:C:0:G:1:T:0:N:0:O:1	.	1,1,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	29431	G	A	A	15	new position with no illumina data	Check	True	True	True	147	.	20	.	0.7551020408163265	.	A:111:C:0:G:0:T:0:N:0:O:36	.	52,88,59,59	59.694	2120.0	.	.	.	.	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	29580	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:136:G:0:T:3:N:0:O:9	.	3,76,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	29733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:58:G:0:T:2:N:0:O:1	.	0,37,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:41:G:1:T:0:N:0:O:3	.	1,12,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00074	artic-pipeline	NB08	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	322	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00074	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:0:T:70:N:0:O:12	.	0,2,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:60:N:0:O:3	.	0,3,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	233	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,3,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	234	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,3,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	90	.	20	.	0.9666666666666667	.	A:0:C:0:G:0:T:87:N:0:O:3	.	2,5,85,85	349.237	1550.4	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,45,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:4:G:0:T:76:N:0:O:4	.	3,19,1,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:4:G:0:T:81:N:0:O:4	.	3,20,1,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:37:T:0:N:0:O:1	.	1,15,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	1.0	.	A:0:C:0:G:0:T:136:N:0:O:0	.	109,109,27,27	278.474	1508.3	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.016666666666666666	.	A:1:C:0:G:45:T:0:N:0:O:14	.	1,25,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:2:C:0:G:38:T:0:N:0:O:4	.	2,18,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.06666666666666667	.	A:4:C:0:G:55:T:0:N:0:O:1	.	4,35,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:98:G:0:T:3:N:0:O:2	.	0,45,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:3:G:0:T:123:N:0:O:2	.	0,50,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.014814814814814815	.	A:2:C:94:G:0:T:0:N:0:O:39	.	0,44,2,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:65:C:2:G:0:T:0:N:0:O:2	.	0,32,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1742	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:98:T:0:N:0:O:3	.	1,16,1,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:6:C:0:G:104:T:0:N:0:O:2	.	6,18,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:0:T:88:N:0:O:0	.	1,59,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:80:T:0:N:0:O:0	.	0,19,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,42,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	2894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	3,45,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	130	.	20	.	0.6615384615384615	.	A:0:C:0:G:0:T:86:N:0:O:44	.	57,101,29,29	54.185	1586.2	.	.	.	.	mixed position	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:0:G:88:T:4:N:0:O:9	.	0,74,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	3275	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:133:C:0:G:3:T:0:N:0:O:0	.	3,44,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:84:G:0:T:3:N:0:O:2	.	0,42,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:82:G:0:T:3:N:0:O:1	.	0,35,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:47:C:0:G:0:T:1:N:0:O:3	.	0,16,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:82:G:0:T:4:N:0:O:2	.	0,62,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3637	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:98:C:0:G:2:T:0:N:0:O:2	.	1,23,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:104:C:0:G:3:T:0:N:0:O:0	.	3,35,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:68:N:0:O:21	.	0,39,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:91:T:2:N:0:O:6	.	2,53,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:82:T:0:N:0:O:2	.	0,51,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:113:C:0:G:4:T:0:N:0:O:0	.	4,44,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.02631578947368421	.	A:0:C:0:G:178:T:5:N:0:O:7	.	0,131,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:0:G:4:T:114:N:0:O:1	.	0,63,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	4955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:113:T:0:N:0:O:2	.	2,41,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5138	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:94:T:2:N:0:O:0	.	1,24,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:0:T:2:N:0:O:0	.	2,13,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	2,21,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	2,53,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.09210526315789473	.	A:0:C:67:G:0:T:7:N:0:O:2	.	0,64,7,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:5:G:0:T:76:N:0:O:0	.	0,54,5,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5821	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	3,50,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:88:N:0:O:3	.	0,44,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:2:C:0:G:64:T:1:N:0:O:1	.	2,9,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:100:G:0:T:3:N:0:O:5	.	0,70,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.0963855421686747	.	A:0:C:74:G:0:T:8:N:0:O:1	.	0,70,8,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:90:N:0:O:9	.	2,51,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.02403846153846154	.	A:201:C:0:G:5:T:0:N:0:O:2	.	5,98,0,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.02564102564102564	.	A:6:C:0:G:223:T:0:N:0:O:5	.	6,120,0,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:75:C:0:G:2:T:1:N:0:O:1	.	2,52,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6400	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:2:G:0:T:0:N:0:O:1	.	0,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:80:G:0:T:3:N:0:O:1	.	2,43,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.037209302325581395	.	A:200:C:0:G:8:T:1:N:0:O:6	.	8,77,0,138	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0427807486631016	.	A:0:C:177:G:0:T:8:N:0:O:2	.	0,106,8,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:120:T:0:N:0:O:0	.	3,36,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	6852	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	3,40,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.09333333333333334	.	A:66:C:0:G:0:T:7:N:0:O:2	.	0,45,7,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	7034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	0,45,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:91:T:0:N:0:O:0	.	4,43,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:4:C:0:G:63:T:0:N:0:O:1	.	4,25,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	2,45,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	7560	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	1,30,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:2:G:0:T:97:N:0:O:8	.	1,60,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:4:G:0:T:97:N:0:O:0	.	0,66,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:5:C:0:G:64:T:0:N:0:O:1	.	5,7,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:5:C:0:G:0:T:72:N:0:O:7	.	4,32,1,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:105:T:0:N:0:O:1	.	3,46,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:94:G:0:T:3:N:0:O:1	.	0,59,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	9347	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:130:C:0:G:3:T:0:N:0:O:0	.	3,64,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	9472	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,52,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	9887	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:82:N:0:O:2	.	2,28,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,22,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:85:G:0:T:2:N:0:O:11	.	2,38,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:0:T:99:N:0:O:1	.	0,46,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	10468	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:3:G:0:T:129:N:0:O:1	.	0,58,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	10526	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,57,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0273972602739726	.	A:0:C:6:G:0:T:211:N:0:O:2	.	0,131,6,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:4:G:0:T:77:N:0:O:9	.	0,66,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,65,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:0:G:4:T:98:N:0:O:6	.	0,60,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	11107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:87:N:0:O:3	.	0,44,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	11139	C	G	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:77:G:2:T:0:N:0:O:7	.	0,57,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	11480	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	1,81,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	11868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,75,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.01932367149758454	.	A:0:C:0:G:131:T:4:N:0:O:72	.	0,102,4,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.08196721311475409	.	A:56:C:0:G:5:T:0:N:0:O:0	.	0,45,5,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:83:T:0:N:0:O:6	.	4,30,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.027472527472527472	.	A:5:C:0:G:177:T:0:N:0:O:0	.	5,79,0,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:2:G:0:T:58:N:0:O:8	.	0,26,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.07	.	A:0:C:91:G:0:T:7:N:0:O:2	.	0,79,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:74:T:0:N:0:O:0	.	0,20,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.034482758620689655	.	A:5:C:0:G:0:T:126:N:0:O:14	.	5,76,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:0:C:82:G:0:T:5:N:0:O:0	.	0,80,5,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.1134020618556701	.	A:11:C:0:G:77:T:0:N:0:O:9	.	11,41,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:75:G:0:T:2:N:0:O:1	.	2,39,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:104:T:0:N:0:O:4	.	4,54,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:67:T:0:N:0:O:2	.	2,16,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.11764705882352941	.	A:29:C:0:G:4:T:0:N:0:O:1	.	0,6,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	13991	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:0:T:2:N:0:O:0	.	2,45,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14099	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:0:G:122:T:3:N:0:O:0	.	3,65,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:77:G:0:T:2:N:0:O:5	.	0,62,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:118:T:0:N:0:O:1	.	3,42,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	99	.	20	.	1.0	.	A:0:C:0:G:0:T:99:N:0:O:0	.	48,48,51,51	466.89	1249.3	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,55,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14631	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:0:G:2:T:0:N:0:O:0	.	2,28,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,37,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14791	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	2,43,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:94:G:0:T:0:N:0:O:1	.	3,49,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:3:G:0:T:77:N:0:O:2	.	0,74,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.015873015873015872	.	A:0:C:1:G:0:T:46:N:0:O:16	.	0,46,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.13725490196078433	.	A:0:C:44:G:0:T:7:N:0:O:0	.	0,32,7,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	16093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:97:N:0:O:2	.	3,52,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	16094	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	2,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,68,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:0:G:108:T:5:N:0:O:1	.	5,56,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	2,18,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	16930	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:4:C:0:G:125:T:0:N:0:O:1	.	4,50,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	1,5,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.047337278106508875	.	A:8:C:0:G:155:T:0:N:0:O:6	.	8,36,0,133	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:95:C:0:G:4:T:0:N:0:O:0	.	4,51,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:91:G:0:T:4:N:0:O:0	.	0,69,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,55,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:83:G:0:T:3:N:0:O:4	.	0,45,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:70:G:0:T:3:N:0:O:0	.	0,44,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17846	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:91:C:0:G:3:T:2:N:0:O:9	.	2,44,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.05263157894736842	.	A:6:C:0:G:108:T:0:N:0:O:0	.	0,67,6,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.024390243902439025	.	A:0:C:160:G:0:T:4:N:0:O:0	.	0,112,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	18731	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:0:T:90:N:0:O:1	.	2,27,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:36:C:0:G:0:T:1:N:0:O:8	.	0,22,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.04	.	A:7:C:0:G:165:T:0:N:0:O:3	.	7,28,0,147	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.07547169811320754	.	A:0:C:48:G:0:T:4:N:0:O:1	.	0,41,4,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:119:C:0:G:0:T:3:N:0:O:1	.	0,54,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:95:G:0:T:3:N:0:O:2	.	0,56,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:104:G:0:T:4:N:0:O:7	.	0,56,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:4:C:0:G:166:T:0:N:0:O:2	.	4,48,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:93:C:0:G:3:T:0:N:0:O:3	.	3,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	20686	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:90:T:1:N:0:O:4	.	3,84,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:107:T:0:N:0:O:11	.	3,101,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:97:C:0:G:4:T:0:N:0:O:0	.	4,83,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.05	.	A:3:C:0:G:57:T:0:N:0:O:0	.	3,47,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:1:C:70:G:0:T:3:N:0:O:7	.	3,67,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:85:C:0:G:3:T:0:N:0:O:4	.	3,25,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:59:C:0:G:2:T:0:N:0:O:1	.	0,1,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:91:T:0:N:0:O:11	.	1,21,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:0:G:2:T:56:N:0:O:0	.	2,8,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:0:G:76:T:5:N:0:O:9	.	0,62,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:89:G:0:T:4:N:0:O:0	.	0,52,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21218	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:74:N:0:O:9	.	0,53,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:2:C:0:G:65:T:0:N:0:O:1	.	2,56,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.014925373134328358	.	A:1:C:0:G:0:T:35:N:0:O:31	.	0,53,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.09574468085106383	.	A:9:C:0:G:84:T:0:N:0:O:1	.	9,20,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21502	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:0:T:2:N:0:O:1	.	0,69,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:0:T:3:N:0:O:0	.	3,49,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.02976190476190476	.	A:5:C:0:G:163:T:0:N:0:O:0	.	5,82,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:0:C:0:G:4:T:163:N:0:O:2	.	4,73,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	22383	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:29:G:0:T:1:N:0:O:3	.	0,16,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	22418	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	0,12,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:30:N:0:O:1	.	0,16,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	22496	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,12,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:0:C:0:G:151:T:4:N:0:O:2	.	0,85,4,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	23248	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	1,31,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.9328358208955224	.	A:0:C:0:G:125:T:0:N:0:O:9	.	58,67,67,67	69.237	1701.1	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	23533	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:77:G:0:T:2:N:0:O:1	.	2,38,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:87:T:0:N:0:O:11	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	3,78,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	23808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:3:C:0:G:140:T:0:N:0:O:0	.	3,100,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.10377358490566038	.	A:0:C:94:G:0:T:11:N:0:O:1	.	0,74,11,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.05128205128205128	.	A:148:C:0:G:0:T:8:N:0:O:0	.	7,72,1,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:6:C:0:G:0:T:77:N:0:O:0	.	6,22,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:78:N:0:O:1	.	1,19,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:110:T:0:N:0:O:0	.	4,58,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:4:C:0:G:109:T:0:N:0:O:0	.	3,34,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:81:G:0:T:3:N:0:O:0	.	0,68,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:113:G:0:T:3:N:0:O:0	.	0,74,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:81:T:0:N:0:O:4	.	3,21,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24319	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:124:G:0:T:0:N:0:O:2	.	2,61,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24320	C	A	C	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.017543859649122806	.	A:3:C:126:G:0:T:0:N:0:O:42	.	3,86,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24571	T	C	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:3:G:0:T:143:N:0:O:0	.	0,82,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:78:C:3:G:0:T:0:N:0:O:0	.	3,43,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:91:C:0:G:3:T:0:N:0:O:1	.	3,40,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24785	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:0:T:78:N:0:O:1	.	2,43,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	0,68,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:92:N:0:O:1	.	0,64,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:1:T:97:N:0:O:0	.	0,67,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	45	.	20	.	0.06666666666666667	.	A:0:C:3:G:0:T:41:N:0:O:1	.	3,35,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	0,2,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25358	A	C	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:134:C:3:G:0:T:0:N:0:O:0	.	3,62,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:84:C:0:G:2:T:0:N:0:O:4	.	2,18,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25370	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:0:T:81:N:0:O:2	.	1,44,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04878048780487805	.	A:117:C:0:G:0:T:6:N:0:O:0	.	6,57,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:89:T:0:N:0:O:3	.	3,39,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:0:C:0:G:120:T:4:N:0:O:23	.	3,81,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	125	.	20	.	1.0	.	A:0:C:0:G:0:T:125:N:0:O:0	.	56,56,69,69	210.0	2024.6	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	25764	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,64,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.11320754716981132	.	A:43:C:6:G:0:T:0:N:0:O:4	.	3,29,3,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:0:C:95:G:0:T:5:N:0:O:0	.	0,61,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:0:T:91:N:0:O:0	.	2,36,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:95:G:0:T:2:N:0:O:3	.	1,56,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,60,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	1,58,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:96:G:0:T:5:N:0:O:0	.	0,77,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,59,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.06976744186046512	.	A:80:C:0:G:6:T:0:N:0:O:0	.	6,43,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:83:T:0:N:0:O:1	.	5,41,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:0:G:68:T:0:N:0:O:0	.	3,25,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.06521739130434782	.	A:0:C:172:G:0:T:12:N:0:O:0	.	0,161,12,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.06060606060606061	.	A:88:C:0:G:0:T:6:N:0:O:5	.	6,33,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.08139534883720931	.	A:7:C:0:G:78:T:0:N:0:O:1	.	7,18,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,67,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:91:C:0:G:3:T:0:N:0:O:11	.	3,41,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,19,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.10752688172043011	.	A:0:C:82:G:0:T:10:N:0:O:1	.	0,62,10,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:89:G:0:T:4:N:0:O:1	.	0,59,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27537	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:95:N:0:O:4	.	0,71,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27683	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:107:C:0:G:3:T:0:N:0:O:2	.	3,55,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:88:G:0:T:0:N:0:O:1	.	2,47,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:78:T:0:N:0:O:2	.	2,17,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,26,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,26,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	27914	A	T	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:120:C:0:G:0:T:3:N:0:O:3	.	0,56,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:81:G:0:T:2:N:0:O:10	.	1,54,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28508	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:100:C:2:G:4:T:0:N:0:O:0	.	4,57,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28543	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:129:N:0:O:2	.	3,89,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:87:T:0:N:0:O:0	.	3,43,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	0,29,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:46:G:0:T:1:N:0:O:3	.	0,23,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:101:T:0:N:0:O:0	.	4,7,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:69:G:0:T:2:N:0:O:4	.	0,24,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:90:G:0:T:3:N:0:O:0	.	0,32,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:121:G:0:T:4:N:0:O:1	.	0,105,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	29111	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	2,28,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	29189	C	G	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:2:T:0:N:0:O:1	.	2,49,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:2:T:0:N:0:O:0	.	1,57,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:104:T:0:N:0:O:8	.	3,26,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	29703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,60,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:92:T:0:N:0:O:1	.	3,35,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00075	artic-pipeline	NB09	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	304	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	9026	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	156	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	9027	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	156	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00075	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	145	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	197	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:0:T:1:N:0:O:0	.	0,7,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	211	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,6,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	276	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:0:G:1:T:48:N:0:O:0	.	1,12,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	282	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:44:G:0:T:1:N:0:O:0	.	0,8,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	283	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,11,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:0:T:41:N:0:O:0	.	1,2,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:41:G:0:T:1:N:0:O:1	.	1,3,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:48:C:0:G:1:T:0:N:0:O:2	.	1,10,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,50,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,41,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	92	.	20	.	0.9782608695652174	.	A:90:C:0:G:1:T:0:N:0:O:1	.	20,21,70,71	70.0	2223.4	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	1,49,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:118:G:0:T:5:N:0:O:3	.	0,58,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:120:G:0:T:4:N:0:O:0	.	0,56,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:0:G:60:T:0:N:0:O:0	.	2,9,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:70:G:0:T:2:N:0:O:4	.	0,55,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:113:G:0:T:5:N:0:O:2	.	0,53,5,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	2,9,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:82:G:0:T:2:N:0:O:4	.	0,22,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:67:C:4:G:0:T:0:N:0:O:1	.	2,33,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:0:C:5:G:0:T:110:N:0:O:2	.	0,38,5,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	1817	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	0,6,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	2028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:145:G:0:T:3:N:0:O:1	.	0,66,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	2029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:139:N:0:O:3	.	0,61,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:90:G:0:T:3:N:0:O:3	.	0,66,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0625	.	A:8:C:0:G:119:T:0:N:0:O:1	.	8,31,0,97	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	2302	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:2:C:0:G:0:T:95:N:0:O:18	.	0,57,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	2406	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:103:C:0:G:3:T:0:N:0:O:35	.	1,12,2,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,16,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:152:C:4:G:0:T:0:N:0:O:2	.	4,81,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	2903	A	C	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:3:G:0:T:0:N:0:O:0	.	3,42,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:90:T:2:N:0:O:11	.	0,74,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	195	.	20	.	0.9794871794871794	.	A:0:C:0:G:0:T:191:N:0:O:4	.	79,83,112,112	265.257	789.3	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:88:C:0:G:2:T:0:N:0:O:7	.	2,13,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:1:G:0:T:86:N:0:O:0	.	0,47,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	1,49,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:83:G:0:T:2:N:0:O:4	.	0,44,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.09876543209876543	.	A:0:C:73:G:0:T:8:N:0:O:0	.	0,55,8,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:5:C:0:G:65:T:0:N:0:O:4	.	1,40,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:63:G:0:T:2:N:0:O:0	.	0,54,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:114:G:0:T:3:N:0:O:0	.	0,54,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,29,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.04294478527607362	.	A:0:C:0:G:149:T:7:N:0:O:7	.	0,107,7,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0228310502283105	.	A:5:C:0:G:210:T:0:N:0:O:4	.	0,97,5,122	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.025510204081632654	.	A:0:C:180:G:0:T:5:N:0:O:11	.	0,91,5,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4409	G	A	G	16	ignore low frequency variant	Pass	False	False	True	289	.	20	.	0.031141868512110725	.	A:9:C:0:G:280:T:0:N:0:O:0	.	4,97,5,192	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:112:C:0:G:0:T:3:N:0:O:9	.	0,58,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,20,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,56,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:91:G:0:T:3:N:0:O:1	.	2,26,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:97:T:2:N:0:O:1	.	2,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	2,43,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.08888888888888889	.	A:0:C:82:G:0:T:8:N:0:O:0	.	0,77,8,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	5783	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:83:C:0:G:0:T:2:N:0:O:6	.	2,57,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:90:N:0:O:1	.	0,76,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:70:T:0:N:0:O:2	.	3,27,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	0.9847328244274809	.	A:0:C:0:G:0:T:129:N:0:O:2	.	74,76,55,55	210.0	1101.4	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.08421052631578947	.	A:0:C:87:G:0:T:8:N:0:O:0	.	0,70,8,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,29,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:91:N:0:O:9	.	1,49,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.06315789473684211	.	A:0:C:86:G:0:T:6:N:0:O:3	.	0,43,6,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:87:N:0:O:1	.	0,49,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6317	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:106:G:0:T:3:N:0:O:1	.	0,48,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	6626	A	C	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:104:C:4:G:0:T:0:N:0:O:1	.	0,60,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:3:T:106:N:0:O:4	.	1,79,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6696	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:88:G:0:T:3:N:0:O:19	.	2,86,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	6724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:117:N:0:O:0	.	1,80,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:0:C:189:G:0:T:5:N:0:O:7	.	0,116,5,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:0:C:194:G:0:T:5:N:0:O:2	.	0,126,5,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6829	T	A	T	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:5:C:0:G:4:T:192:N:0:O:5	.	5,97,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6830	A	C	A	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:191:C:5:G:0:T:3:N:0:O:2	.	5,104,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:0:G:2:T:75:N:0:O:0	.	1,22,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:59:C:0:G:1:T:4:N:0:O:3	.	0,42,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	7035	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:0:T:74:N:0:O:0	.	0,45,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	7201	A	C	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.04411764705882353	.	A:130:C:6:G:0:T:0:N:0:O:0	.	4,73,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	3,37,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:74:T:0:N:0:O:0	.	2,22,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:104:G:0:T:3:N:0:O:1	.	3,50,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:77:G:0:T:2:N:0:O:2	.	0,51,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:1:C:2:G:0:T:97:N:0:O:6	.	0,45,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,27,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:0:C:0:G:143:T:3:N:0:O:5	.	3,51,0,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:0:C:2:G:0:T:45:N:0:O:0	.	2,45,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	128	.	20	.	1.0	.	A:0:C:0:G:0:T:128:N:0:O:0	.	53,53,75,75	70.0	984.4	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:76:T:0:N:0:O:2	.	4,5,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	8950	C	T	T	17	accept high frequency variant	Pass	False	True	True	283	.	20	.	0.9787985865724381	.	A:0:C:0:G:0:T:277:N:0:O:6	.	109,115,168,168	70.0	1338.6	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:6:C:0:G:0:T:86:N:0:O:6	.	4,41,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:92:G:0:T:2:N:0:O:3	.	0,47,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	9712	C	A	N	2	allele in negative control	Alarm	False	False	False	111	.	20	.	0.018018018018018018	.	A:2:C:97:G:0:T:0:N:0:O:12	.	0,47,2,64	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,38,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	9920	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:131:T:3:N:0:O:0	.	3,61,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,20,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:1:C:93:G:0:T:2:N:0:O:13	.	2,34,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:0:T:115:N:0:O:0	.	0,48,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	10313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	1,35,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:97:G:0:T:3:N:0:O:2	.	0,64,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:103:C:0:G:4:T:0:N:0:O:0	.	4,40,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	10810	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,56,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.07547169811320754	.	A:0:C:0:G:8:T:93:N:0:O:5	.	0,54,8,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:103:G:0:T:0:N:0:O:13	.	3,61,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	11104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:44:N:0:O:1	.	0,37,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:73:G:0:T:2:N:0:O:3	.	0,43,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.07407407407407407	.	A:0:C:97:G:0:T:8:N:0:O:3	.	0,65,8,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:0:C:0:G:130:T:4:N:0:O:54	.	0,77,4,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:75:C:0:G:4:T:0:N:0:O:0	.	0,53,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	12329	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:96:C:0:G:2:T:1:N:0:O:5	.	2,33,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:84:T:0:N:0:O:4	.	3,29,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	125	.	20	.	0.968	.	A:121:C:0:G:0:T:0:N:0:O:4	.	59,63,62,62	350.0	1193.5	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:71:G:0:T:3:N:0:O:1	.	0,60,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,40,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13014	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,38,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:76:T:0:N:0:O:2	.	3,17,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:85:G:0:T:4:N:0:O:2	.	0,84,4,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:0:G:87:T:0:N:0:O:13	.	4,48,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:102:C:0:G:4:T:0:N:0:O:0	.	4,53,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:86:T:0:N:0:O:3	.	2,20,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:81:T:0:N:0:O:0	.	4,12,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:87:G:0:T:4:N:0:O:3	.	0,75,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:78:C:0:G:0:T:2:N:0:O:1	.	2,37,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:111:C:0:G:4:T:0:N:0:O:1	.	3,51,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:117:T:0:N:0:O:0	.	3,52,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.08490566037735849	.	A:9:C:0:G:95:T:0:N:0:O:2	.	9,33,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:87:T:0:N:0:O:0	.	3,23,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:1:G:91:T:0:N:0:O:0	.	3,45,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:4:G:0:T:126:N:0:O:1	.	0,88,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	3,67,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:0:G:136:T:0:N:0:O:0	.	3,94,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15670	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:0:G:143:T:0:N:0:O:0	.	3,101,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:139:C:0:G:3:T:0:N:0:O:0	.	3,97,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	1,61,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.10714285714285714	.	A:0:C:49:G:0:T:6:N:0:O:1	.	1,35,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:101:G:0:T:3:N:0:O:2	.	0,66,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:3:T:103:N:0:O:2	.	0,75,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.01818181818181818	.	A:3:C:0:G:127:T:1:N:0:O:34	.	0,97,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	16999	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,30,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:2:G:0:T:0:N:0:O:0	.	2,37,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:142:C:0:G:3:T:0:N:0:O:8	.	3,60,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.07006369426751592	.	A:11:C:0:G:136:T:0:N:0:O:10	.	11,63,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17195	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,17,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:0:G:52:T:0:N:0:O:0	.	2,20,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:0:G:52:T:0:N:0:O:0	.	2,19,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.06779661016949153	.	A:53:C:0:G:4:T:0:N:0:O:2	.	4,23,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.07017543859649122	.	A:4:C:0:G:0:T:50:N:0:O:3	.	4,24,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:3:T:0:N:0:O:0	.	3,66,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,43,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.09230769230769231	.	A:0:C:58:G:0:T:6:N:0:O:1	.	0,41,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:84:G:0:T:3:N:0:O:3	.	0,31,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.04040404040404041	.	A:0:C:190:G:0:T:8:N:0:O:0	.	1,89,7,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:0:C:81:G:0:T:6:N:0:O:1	.	0,56,6,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.05405405405405406	.	A:98:C:0:G:1:T:6:N:0:O:6	.	0,54,6,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0847457627118644	.	A:10:C:0:G:107:T:0:N:0:O:1	.	0,74,10,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	17876	C	A	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:81:G:0:T:0:N:0:O:1	.	0,37,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	18078	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	1,50,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:106:N:0:O:17	.	3,68,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	102	.	20	.	0.9901960784313726	.	A:0:C:101:G:0:T:1:N:0:O:0	.	38,38,63,64	413.216	1450.9	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	18988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	245	.	20	.	0.02040816326530612	.	A:5:C:0:G:238:T:0:N:0:O:2	.	5,84,0,161	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.024630541871921183	.	A:5:C:0:G:197:T:0:N:0:O:1	.	5,32,0,171	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19291	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	0,7,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19366	C	A	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:27:G:0:T:0:N:0:O:0	.	0,15,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:26:G:0:T:1:N:0:O:0	.	0,15,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19372	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:24:N:0:O:5	.	0,16,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19374	C	T	T	1	near depth threshold	Alarm	False	True	True	20	.	20	.	0.5	.	A:0:C:0:G:0:T:10:N:0:O:10	.	2,12,8,8	9.937	256.8	.	depth near threshold	.	mismatch(n+m)	mixed position	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	19509	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:21:T:1:N:0:O:0	.	1,9,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:23:N:0:O:0	.	0,12,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19511	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:1:T:0:N:0:O:0	.	1,10,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:143:C:0:G:0:T:3:N:0:O:1	.	0,84,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:84:G:0:T:3:N:0:O:1	.	0,48,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:0:G:2:T:0:N:0:O:0	.	2,9,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:90:G:0:T:2:N:0:O:6	.	0,44,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:3:T:106:N:0:O:1	.	3,45,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	20678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0223463687150838	.	A:0:C:171:G:0:T:4:N:0:O:4	.	0,110,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	20906	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	1,17,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,40,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:4:C:0:G:115:T:0:N:0:O:0	.	4,30,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:2:T:0:N:0:O:1	.	0,1,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.08888888888888889	.	A:0:C:0:G:74:T:8:N:0:O:8	.	0,55,8,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,51,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.013888888888888888	.	A:0:C:1:G:0:T:45:N:0:O:26	.	0,50,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	0,57,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	3,26,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:2:G:0:T:92:N:0:O:13	.	0,82,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:119:C:0:G:0:T:3:N:0:O:0	.	3,52,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:90:G:0:T:2:N:0:O:5	.	0,19,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.025510204081632654	.	A:5:C:0:G:191:T:0:N:0:O:0	.	5,44,0,152	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.041176470588235294	.	A:0:C:162:G:0:T:7:N:0:O:1	.	0,76,7,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22331	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	1,20,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	0,25,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22390	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,23,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22391	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:0:T:46:N:0:O:0	.	1,25,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22393	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:1:G:0:T:0:N:0:O:0	.	1,21,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22436	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:38:T:0:N:0:O:0	.	1,21,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22459	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:1:G:0:T:0:N:0:O:0	.	1,26,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,25,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.05714285714285714	.	A:0:C:0:G:2:T:33:N:0:O:0	.	2,14,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	1,13,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22529	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,20,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.024630541871921183	.	A:1:C:0:G:5:T:167:N:0:O:30	.	0,122,5,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:140:C:0:G:3:T:0:N:0:O:0	.	1,59,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:83:T:0:N:0:O:11	.	3,26,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23596	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:3:G:0:T:127:N:0:O:2	.	0,83,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23598	A	C	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:114:C:4:G:0:T:0:N:0:O:0	.	0,81,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,79,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:4:G:0:T:108:N:0:O:1	.	0,78,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:147:C:0:G:0:T:3:N:0:O:0	.	2,79,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:2:C:0:G:0:T:57:N:0:O:1	.	2,9,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:69:T:0:N:0:O:0	.	1,55,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	129	.	20	.	1.0	.	A:0:C:0:G:0:T:129:N:0:O:0	.	72,72,57,57	210.0	696.5	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	24047	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:1:G:92:T:0:N:0:O:0	.	2,26,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:0:C:92:G:0:T:5:N:0:O:1	.	0,76,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:56:G:1:T:2:N:0:O:11	.	0,63,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:3:C:142:G:1:T:0:N:0:O:6	.	3,62,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	24619	A	G	A	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.02197802197802198	.	A:177:C:0:G:4:T:0:N:0:O:1	.	4,78,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:92:T:0:N:0:O:2	.	1,61,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	42	.	20	.	0.047619047619047616	.	A:0:C:2:G:0:T:40:N:0:O:0	.	2,32,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:3:G:0:T:0:N:0:O:0	.	3,43,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25316	T	C	T	16	ignore low frequency variant	Pass	False	False	True	272	.	20	.	0.11029411764705882	.	A:0:C:30:G:0:T:236:N:0:O:6	.	11,111,19,161	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25424	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,52,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25515	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	1,50,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25696	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:1:G:83:T:0:N:0:O:3	.	2,67,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:2:G:53:T:0:N:0:O:0	.	2,35,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:98:G:0:T:3:N:0:O:9	.	2,93,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25796	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:52:G:0:T:2:N:0:O:17	.	2,51,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.06796116504854369	.	A:93:C:0:G:7:T:0:N:0:O:3	.	7,81,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:78:C:0:G:3:T:0:N:0:O:3	.	3,59,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.08	.	A:46:C:0:G:4:T:0:N:0:O:0	.	4,30,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:91:G:0:T:4:N:0:O:2	.	3,80,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	2,64,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:0:G:68:T:0:N:0:O:0	.	3,48,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:2:G:0:T:0:N:0:O:0	.	2,61,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26154	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:59:C:0:G:2:T:0:N:0:O:16	.	2,36,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26176	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:99:G:0:T:0:N:0:O:1	.	4,59,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26348	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,52,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	1,54,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,77,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:6:C:0:G:81:T:0:N:0:O:0	.	6,35,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.03225806451612903	.	A:0:C:178:G:0:T:6:N:0:O:2	.	0,162,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:98:N:0:O:0	.	0,50,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,74,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:83:C:0:G:0:T:4:N:0:O:2	.	4,24,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.08974358974358974	.	A:7:C:0:G:70:T:0:N:0:O:1	.	7,11,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	0.9919354838709677	.	A:0:C:123:G:0:T:0:N:0:O:1	.	72,73,51,51	70.0	1382.1	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:84:G:0:T:4:N:0:O:1	.	0,66,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.027472527472527472	.	A:0:C:172:G:0:T:5:N:0:O:5	.	0,162,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:103:G:0:T:4:N:0:O:3	.	0,64,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.07058823529411765	.	A:6:C:0:G:78:T:1:N:0:O:0	.	6,29,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:72:G:0:T:4:N:0:O:0	.	0,66,4,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:82:C:0:G:2:T:0:N:0:O:7	.	2,25,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	27540	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:120:C:0:G:3:T:0:N:0:O:2	.	3,66,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:71:T:0:N:0:O:1	.	2,10,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:124:G:0:T:0:N:0:O:0	.	70,70,54,54	485.463	1726.7	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	254	.	20	.	0.9960629921259843	.	A:0:C:253:G:0:T:1:N:0:O:0	.	126,126,127,128	56.684	1567.9	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	28178	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	1,42,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	28246	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:1:G:2:T:93:N:0:O:2	.	0,41,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	28247	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:87:C:0:G:0:T:2:N:0:O:3	.	0,48,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:1:C:67:G:0:T:2:N:0:O:3	.	0,52,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.014705882352941176	.	A:2:C:98:G:0:T:0:N:0:O:36	.	2,86,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:85:G:0:T:2:N:0:O:2	.	0,35,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	104	.	20	.	0.9903846153846154	.	A:0:C:0:G:103:T:0:N:0:O:1	.	30,31,73,73	173.916	1604.3	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	28915	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:116:G:0:T:3:N:0:O:1	.	1,30,2,90	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:95:T:0:N:0:O:3	.	2,29,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:1:C:2:G:75:T:0:N:0:O:1	.	1,24,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:51:C:0:G:2:T:0:N:0:O:1	.	0,4,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:112:C:0:G:3:T:0:N:0:O:4	.	3,27,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:5:C:0:G:108:T:0:N:0:O:9	.	5,28,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:137:C:3:G:0:T:0:N:0:O:2	.	0,65,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	29451	C	T	T	17	accept high frequency variant	Pass	False	True	True	152	.	20	.	0.9802631578947368	.	A:0:C:0:G:0:T:149:N:0:O:3	.	65,68,84,84	210.0	1785.5	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	103	.	20	.	0.883495145631068	.	A:0:C:0:G:91:T:0:N:0:O:12	.	37,49,54,54	263.561	913.5	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:91:T:0:N:0:O:3	.	2,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00076	artic-pipeline	NB10	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00076	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:43:G:0:T:2:N:0:O:0	.	0,8,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	62	.	20	.	0.967741935483871	.	A:0:C:0:G:1:T:60:N:0:O:1	.	4,5,56,57	70.0	1458.5	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:0:C:0:G:183:T:4:N:0:O:5	.	0,62,4,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,53,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:3:T:92:N:0:O:2	.	3,38,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	746	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:3:G:0:T:111:N:0:O:7	.	0,59,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:121:G:0:T:3:N:0:O:0	.	0,56,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:44:T:0:N:0:O:1	.	1,16,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	139	.	20	.	0.9928057553956835	.	A:0:C:0:G:0:T:138:N:0:O:1	.	109,110,29,29	342.939	1594.4	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:36:C:0:G:1:T:0:N:0:O:1	.	0,13,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.017543859649122806	.	A:1:C:0:G:43:T:0:N:0:O:13	.	0,20,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:117:N:0:O:0	.	0,43,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	276	.	20	.	0.036231884057971016	.	A:0:C:256:G:0:T:10:N:0:O:10	.	0,83,10,193	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.016666666666666666	.	A:2:C:84:G:0:T:0:N:0:O:34	.	0,43,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:59:C:2:G:0:T:0:N:0:O:0	.	2,26,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:74:C:0:G:3:T:0:N:0:O:0	.	0,2,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:4:C:0:G:127:T:0:N:0:O:24	.	2,42,2,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:8:C:0:G:92:T:0:N:0:O:0	.	8,28,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:117:C:5:G:0:T:0:N:0:O:0	.	5,44,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:3:G:0:T:0:N:0:O:0	.	3,58,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:89:T:0:N:0:O:1	.	3,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:65:G:0:T:3:N:0:O:5	.	0,56,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:0:T:2:N:0:O:1	.	0,72,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	2842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:95:G:0:T:3:N:0:O:1	.	0,74,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:2:G:0:T:0:N:0:O:0	.	1,32,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:95:G:0:T:2:N:0:O:6	.	1,45,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	129	.	20	.	0.6589147286821705	.	A:0:C:0:G:0:T:85:N:0:O:44	.	45,89,40,40	47.196	1429.3	.	.	.	.	mixed position	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:116:N:0:O:1	.	0,65,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:88:T:2:N:0:O:11	.	0,69,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	3258	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:117:C:0:G:3:T:0:N:0:O:2	.	3,29,0,93	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3259	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:124:T:0:N:0:O:1	.	3,29,0,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:94:N:0:O:0	.	0,50,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:2:G:0:T:0:N:0:O:0	.	0,41,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:0:T:94:N:0:O:1	.	0,47,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:78:G:0:T:3:N:0:O:2	.	0,41,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:68:T:0:N:0:O:0	.	2,24,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.06557377049180328	.	A:0:C:114:G:0:T:8:N:0:O:0	.	0,96,8,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:88:T:2:N:0:O:8	.	1,55,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	0,50,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	0,66,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	3994	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:92:T:2:N:0:O:0	.	0,61,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4156	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:3:G:0:T:139:N:0:O:0	.	0,67,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:0:C:62:G:0:T:5:N:0:O:3	.	0,40,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.018518518518518517	.	A:3:C:0:G:0:T:125:N:0:O:34	.	0,68,3,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	248	.	20	.	0.020161290322580645	.	A:0:C:0:G:236:T:5:N:0:O:7	.	0,163,5,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:141:C:0:G:0:T:3:N:0:O:2	.	0,62,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.024844720496894408	.	A:157:C:0:G:4:T:0:N:0:O:0	.	4,69,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:141:G:0:T:4:N:0:O:0	.	0,89,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	4922	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:109:N:0:O:3	.	0,87,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:0:T:2:N:0:O:1	.	2,25,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5317	A	G	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:145:C:0:G:3:T:0:N:0:O:0	.	3,70,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,47,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.021367521367521368	.	A:0:C:223:G:0:T:5:N:0:O:6	.	0,140,5,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.16666666666666666	.	A:0:C:63:G:0:T:13:N:0:O:2	.	0,57,13,21	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5740	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:0:G:3:T:106:N:0:O:5	.	1,47,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:0:T:86:N:0:O:0	.	0,52,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5872	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	0,15,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.01694915254237288	.	A:2:C:0:G:98:T:0:N:0:O:18	.	0,26,2,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.10869565217391304	.	A:2:C:79:G:0:T:10:N:0:O:1	.	0,60,10,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:112:G:0:T:3:N:0:O:0	.	1,51,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	6148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:1:T:78:N:0:O:12	.	1,72,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	244	.	20	.	0.020491803278688523	.	A:5:C:0:G:234:T:0:N:0:O:5	.	4,92,1,152	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:97:G:0:T:5:N:0:O:4	.	0,74,5,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:124:C:0:G:3:T:0:N:0:O:1	.	3,68,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:118:G:0:T:4:N:0:O:1	.	0,78,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:102:T:0:N:0:O:3	.	4,52,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.02262443438914027	.	A:210:C:0:G:5:T:1:N:0:O:5	.	5,117,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:75:N:0:O:0	.	2,24,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:0:T:2:N:0:O:1	.	0,73,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,22,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	7819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:69:G:0:T:2:N:0:O:2	.	0,40,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:2:T:0:N:0:O:1	.	2,28,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	8847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:0:T:2:N:0:O:0	.	0,31,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	8876	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:119:T:0:N:0:O:0	.	0,53,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	8877	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:0:G:111:T:3:N:0:O:0	.	0,47,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	8878	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:4:C:106:G:0:T:0:N:0:O:3	.	0,47,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:5:C:0:G:79:T:1:N:0:O:0	.	5,13,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:136:T:0:N:0:O:1	.	3,45,0,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:0:C:95:G:0:T:5:N:0:O:0	.	0,47,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:93:G:0:T:5:N:0:O:1	.	1,50,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	9719	C	T	N	2	allele in negative control	Alarm	False	False	False	124	.	20	.	0.024193548387096774	.	A:0:C:121:G:0:T:3:N:0:O:0	.	0,79,3,45	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	9953	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:96:T:2:N:0:O:1	.	2,51,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,10,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	10134	T	C	T	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.01675977653631285	.	A:0:C:3:G:0:T:146:N:0:O:30	.	0,69,3,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	10317	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	0,54,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:112:G:0:T:3:N:0:O:0	.	0,43,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:85:G:0:T:4:N:0:O:2	.	0,31,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	10469	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:103:N:0:O:0	.	0,32,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	10470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:106:G:0:T:3:N:0:O:0	.	0,32,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,24,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	10770	A	G	N	12	misc mixed variant	Check	False	False	False	103	.	20	.	0.6019417475728155	.	A:40:C:0:G:62:T:0:N:0:O:1	.	40,61,22,42	371.853	289.0	.	.	.	.	mixed position	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:2:T:97:N:0:O:4	.	0,56,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	11104	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:1:T:46:N:0:O:0	.	0,40,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.07692307692307693	.	A:0:C:83:G:0:T:7:N:0:O:1	.	0,59,7,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	11670	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.01485148514851485	.	A:0:C:0:G:129:T:3:N:0:O:70	.	1,62,2,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:57:C:0:G:3:T:0:N:0:O:1	.	1,34,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	12068	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	1,29,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:60:G:0:T:4:N:0:O:17	.	0,55,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	2,35,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:2:G:0:T:0:N:0:O:0	.	2,42,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:83:T:0:N:0:O:2	.	2,18,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12437	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	2,42,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:89:G:0:T:1:N:0:O:1	.	0,46,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,58,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.021739130434782608	.	A:5:C:0:G:223:T:0:N:0:O:2	.	5,93,0,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:97:C:0:G:2:T:0:N:0:O:7	.	2,45,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:87:G:0:T:4:N:0:O:0	.	0,52,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:62:G:0:T:2:N:0:O:0	.	0,61,2,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13482	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:67:C:0:G:2:T:0:N:0:O:0	.	0,42,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:72:C:0:G:2:T:0:N:0:O:0	.	0,47,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:5:C:0:G:98:T:0:N:0:O:4	.	5,35,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13593	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:1:C:3:G:0:T:99:N:0:O:1	.	0,62,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:4:C:0:G:119:T:0:N:0:O:4	.	4,69,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:45:C:0:G:1:T:0:N:0:O:2	.	0,11,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14107	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:91:C:0:G:0:T:4:N:0:O:0	.	4,45,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:81:G:0:T:2:N:0:O:5	.	0,73,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,71,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	14407	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,47,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	99	.	20	.	1.0	.	A:0:C:0:G:0:T:99:N:0:O:0	.	59,59,40,40	397.905	1279.6	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:90:G:0:T:0:N:0:O:2	.	0,60,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:89:G:0:T:3:N:0:O:0	.	0,60,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:106:G:0:T:3:N:0:O:1	.	0,78,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,42,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14729	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,55,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	14760	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:91:G:0:T:2:N:0:O:3	.	0,78,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	14967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:0:G:87:T:0:N:0:O:0	.	5,43,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	15025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:109:T:0:N:0:O:1	.	3,62,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:82:T:0:N:0:O:2	.	5,33,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.09090909090909091	.	A:0:C:50:G:0:T:5:N:0:O:0	.	1,28,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:105:G:1:T:5:N:0:O:0	.	0,74,5,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	16443	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:116:G:0:T:3:N:0:O:2	.	0,63,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:0:G:2:T:73:N:0:O:0	.	2,38,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:0:G:3:T:76:N:0:O:4	.	3,35,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,44,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:115:T:3:N:0:O:3	.	3,66,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:73:T:0:N:0:O:1	.	4,18,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16742	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:110:N:0:O:0	.	0,76,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:81:T:0:N:0:O:3	.	3,15,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:3:T:94:N:0:O:1	.	0,58,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.018867924528301886	.	A:3:C:0:G:119:T:2:N:0:O:35	.	0,73,3,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:79:C:0:G:2:T:0:N:0:O:1	.	0,35,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:81:C:3:G:0:T:0:N:0:O:0	.	3,38,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.06806282722513089	.	A:13:C:0:G:166:T:0:N:0:O:12	.	13,55,0,136	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:67:C:0:G:2:T:0:N:0:O:1	.	1,18,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,64,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:104:G:0:T:5:N:0:O:2	.	0,53,5,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:87:G:0:T:3:N:0:O:0	.	0,46,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:101:C:0:G:0:T:3:N:0:O:6	.	0,44,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.06140350877192982	.	A:7:C:0:G:107:T:0:N:0:O:0	.	0,60,7,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:84:G:0:T:2:N:0:O:5	.	0,65,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	17967	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:121:N:0:O:3	.	0,59,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	18016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	253	.	20	.	0.02766798418972332	.	A:0:C:243:G:0:T:7:N:0:O:3	.	0,104,7,149	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	18735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:44:C:0:G:1:T:0:N:0:O:3	.	1,23,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.03431372549019608	.	A:7:C:0:G:195:T:1:N:0:O:1	.	7,31,0,173	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:48:N:0:O:1	.	0,32,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:65:G:0:T:2:N:0:O:0	.	0,40,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19476	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:58:C:0:G:2:T:0:N:0:O:3	.	0,18,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.1388888888888889	.	A:0:C:31:G:0:T:5:N:0:O:0	.	0,27,5,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,25,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:2:C:0:G:58:T:0:N:0:O:1	.	2,22,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19528	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:68:T:0:N:0:O:1	.	2,29,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19563	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:0:G:52:T:0:N:0:O:0	.	2,14,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19568	T	G	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:0:G:2:T:76:N:0:O:0	.	2,41,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:0:G:4:T:70:N:0:O:1	.	0,19,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:0:G:3:T:93:N:0:O:0	.	3,44,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:131:T:0:N:0:O:4	.	3,74,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0898876404494382	.	A:8:C:0:G:81:T:0:N:0:O:0	.	8,59,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.02926829268292683	.	A:199:C:0:G:6:T:0:N:0:O:0	.	6,88,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	20906	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:94:G:0:T:2:N:0:O:3	.	1,43,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	20925	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:128:T:0:N:0:O:5	.	0,71,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.11940298507462686	.	A:0:C:0:G:55:T:8:N:0:O:4	.	0,40,8,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,39,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21209	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:0:T:77:N:0:O:4	.	1,29,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.014925373134328358	.	A:1:C:0:G:0:T:45:N:0:O:21	.	1,40,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:61:C:0:G:2:T:0:N:0:O:1	.	2,7,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.08433734939759036	.	A:7:C:0:G:73:T:0:N:0:O:3	.	6,21,1,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:78:G:0:T:5:N:0:O:3	.	4,33,1,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:98:G:0:T:2:N:0:O:5	.	0,83,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:4:C:0:G:114:T:0:N:0:O:9	.	4,64,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:0:G:111:T:4:N:0:O:0	.	2,69,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.034013605442176874	.	A:5:C:0:G:142:T:0:N:0:O:0	.	5,79,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:0:G:4:T:117:N:0:O:1	.	4,44,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:0:C:0:G:157:T:4:N:0:O:1	.	0,72,4,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	125	.	20	.	0.912	.	A:0:C:0:G:114:T:0:N:0:O:11	.	58,69,56,56	139.237	1535.0	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,29,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:83:T:0:N:0:O:6	.	3,21,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:108:N:0:O:2	.	0,70,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.12643678160919541	.	A:0:C:75:G:1:T:11:N:0:O:0	.	0,54,11,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.06329113924050633	.	A:0:C:65:G:0:T:5:N:0:O:9	.	0,65,5,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,13,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	24332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:99:T:0:N:0:O:1	.	3,32,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:92:T:0:N:0:O:11	.	0,52,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:86:C:3:G:0:T:0:N:0:O:0	.	3,44,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:0:G:3:T:0:N:0:O:0	.	3,53,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	24868	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:2:C:0:G:95:T:0:N:0:O:9	.	2,69,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:107:C:4:G:0:T:0:N:0:O:0	.	4,54,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.027777777777777776	.	A:210:C:0:G:0:T:6:N:0:O:0	.	6,107,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	258	.	20	.	0.01937984496124031	.	A:0:C:0:G:199:T:5:N:0:O:54	.	5,160,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.022988505747126436	.	A:0:C:0:G:4:T:166:N:0:O:4	.	4,75,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	214	.	20	.	1.0	.	A:0:C:0:G:0:T:214:N:0:O:0	.	101,101,113,113	420.0	3680.6	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.019230769230769232	.	A:4:C:184:G:0:T:0:N:0:O:20	.	4,123,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.013793103448275862	.	A:2:C:87:G:0:T:0:N:0:O:56	.	2,48,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:42:C:2:G:0:T:0:N:0:O:1	.	1,29,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:98:G:0:T:3:N:0:O:0	.	0,66,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:95:C:0:G:3:T:0:N:0:O:2	.	3,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26131	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:99:G:1:T:0:N:0:O:3	.	0,87,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	1,63,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:106:G:0:T:3:N:0:O:0	.	0,80,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.014598540145985401	.	A:0:C:98:G:0:T:2:N:0:O:37	.	0,116,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,38,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:95:T:0:N:0:O:3	.	2,42,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	2,35,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.03305785123966942	.	A:0:C:233:G:0:T:8:N:0:O:1	.	0,189,8,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	261	.	20	.	0.022988505747126436	.	A:0:C:6:G:0:T:255:N:0:O:0	.	0,193,6,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:92:C:0:G:0:T:7:N:0:O:2	.	7,35,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.13414634146341464	.	A:11:C:0:G:71:T:0:N:0:O:0	.	11,17,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:0:C:113:G:0:T:6:N:0:O:0	.	0,95,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,56,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:0:G:0:T:2:N:0:O:0	.	0,48,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:96:C:0:G:4:T:0:N:0:O:1	.	4,30,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:4:C:0:G:75:T:0:N:0:O:0	.	4,17,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.08536585365853659	.	A:0:C:75:G:0:T:7:N:0:O:0	.	0,54,7,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:1:T:2:N:0:O:0	.	0,61,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	27353	A	C	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:138:C:3:G:0:T:0:N:0:O:0	.	3,57,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:53:C:0:G:2:T:0:N:0:O:1	.	1,6,1,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:68:T:0:N:0:O:1	.	2,17,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:0:G:0:T:2:N:0:O:2	.	2,24,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:56:G:1:T:2:N:0:O:4	.	0,34,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:4:C:0:G:97:T:0:N:0:O:1	.	4,48,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	0,76,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:84:C:0:G:2:T:0:N:0:O:3	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28759	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	0,34,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:75:G:0:T:3:N:0:O:4	.	0,36,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:48:G:1:T:1:N:0:O:1	.	0,28,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28867	T	C	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.01639344262295082	.	A:0:C:1:G:0:T:46:N:0:O:14	.	0,43,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	28889	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:0:T:98:N:0:O:4	.	2,28,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,37,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	1,25,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:120:G:0:T:4:N:0:O:1	.	0,102,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29101	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:119:C:0:G:3:T:0:N:0:O:0	.	3,52,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:4:G:0:T:114:N:0:O:0	.	0,64,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29272	C	T	T	17	accept high frequency variant	Pass	False	True	True	112	.	20	.	1.0	.	A:0:C:0:G:0:T:112:N:0:O:0	.	44,44,68,68	279.237	970.4	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	29378	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:1:G:0:T:2:N:0:O:2	.	2,45,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:1:C:131:G:0:T:3:N:0:O:0	.	0,77,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:130:C:0:G:3:T:0:N:0:O:4	.	3,32,0,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:4:C:0:G:127:T:0:N:0:O:13	.	4,32,0,112	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:97:T:0:N:0:O:3	.	2,33,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:80:G:2:T:0:N:0:O:3	.	2,24,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00077	artic-pipeline	NB11	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	303	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	142	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00077	artic-pipeline	NB11	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	142	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:0:T:63:N:0:O:5	.	0,3,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:0:C:55:G:0:T:3:N:0:O:0	.	0,3,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:42:G:0:T:1:N:0:O:2	.	0,2,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	211	T	C	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:2:G:0:T:59:N:0:O:0	.	0,2,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	84	.	20	.	0.9880952380952381	.	A:0:C:0:G:0:T:83:N:0:O:1	.	3,4,80,80	69.237	1612.4	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	979	T	A	T	16	ignore low frequency variant	Pass	False	False	True	270	.	20	.	0.022222222222222223	.	A:6:C:0:G:0:T:263:N:0:O:1	.	6,145,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1002	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:147:C:0:G:3:T:0:N:0:O:0	.	0,80,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.08620689655172414	.	A:5:C:0:G:52:T:0:N:0:O:1	.	5,21,0,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	135	.	20	.	1.0	.	A:0:C:0:G:0:T:135:N:0:O:0	.	101,101,34,34	206.227	1620.8	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	1203	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:98:C:0:G:2:T:0:N:0:O:2	.	2,64,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:105:G:0:T:5:N:0:O:0	.	0,38,5,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:120:N:0:O:0	.	0,48,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	0,0,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:81:N:0:O:1	.	1,39,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:94:N:0:O:0	.	0,45,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:2:G:0:T:0:N:0:O:0	.	0,53,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:101:G:0:T:3:N:0:O:0	.	0,54,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.11458333333333333	.	A:11:C:0:G:84:T:1:N:0:O:0	.	11,30,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	2284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:88:T:0:N:0:O:3	.	2,24,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:1:G:0:T:83:N:0:O:0	.	0,55,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	0,24,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,14,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	2577	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:119:T:0:N:0:O:2	.	3,63,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,53,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:113:C:0:G:3:T:0:N:0:O:1	.	3,58,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,80,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:69:C:3:G:0:T:0:N:0:O:0	.	0,21,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	2,29,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	121	.	20	.	0.628099173553719	.	A:0:C:0:G:0:T:76:N:0:O:45	.	39,84,37,37	194.002	1392.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	3091	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:120:T:3:N:0:O:1	.	0,50,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:73:T:2:N:0:O:16	.	0,66,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:103:C:0:G:4:T:0:N:0:O:8	.	4,41,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:63:T:0:N:0:O:1	.	2,28,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:0:T:1:N:0:O:1	.	1,19,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:92:T:0:N:0:O:3	.	2,29,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:101:G:0:T:3:N:0:O:1	.	0,85,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3739	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:3:G:0:T:134:N:0:O:1	.	0,85,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:0:G:79:T:3:N:0:O:7	.	3,55,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:75:T:0:N:0:O:1	.	0,50,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.030434782608695653	.	A:0:C:0:G:213:T:7:N:0:O:10	.	0,169,7,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	4471	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	3,60,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:94:C:0:G:0:T:4:N:0:O:5	.	0,75,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	4566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:89:N:0:O:10	.	1,61,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:108:G:0:T:4:N:0:O:0	.	0,69,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:0:G:3:T:134:N:0:O:4	.	0,72,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.01818181818181818	.	A:0:C:0:G:3:T:144:N:0:O:18	.	0,87,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	5089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:118:C:3:G:0:T:0:N:0:O:4	.	0,52,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,27,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:0:C:67:G:0:T:4:N:0:O:1	.	0,63,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:0:C:94:G:0:T:7:N:0:O:0	.	0,77,7,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:2:G:0:T:94:N:0:O:12	.	1,52,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:85:G:0:T:5:N:0:O:4	.	0,54,5,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,52,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:3:T:99:N:0:O:6	.	0,60,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:90:T:1:N:0:O:2	.	2,39,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.03755868544600939	.	A:196:C:0:G:8:T:1:N:0:O:8	.	7,96,1,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:131:T:3:N:0:O:0	.	2,72,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:89:N:0:O:0	.	2,44,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:77:T:1:N:0:O:0	.	2,43,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	7330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	2,45,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:6:C:0:G:94:T:1:N:0:O:0	.	6,40,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	7524	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:111:T:0:N:0:O:1	.	3,40,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	8117	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:89:T:0:N:0:O:2	.	2,37,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	8848	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:81:C:0:G:3:T:0:N:0:O:2	.	1,33,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	8849	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:3:C:0:G:66:T:0:N:0:O:3	.	1,42,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	8850	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:0:G:2:T:97:N:0:O:6	.	0,70,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	8854	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	0,59,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.07894736842105263	.	A:6:C:0:G:69:T:0:N:0:O:1	.	6,9,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:0:T:72:N:0:O:0	.	2,34,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:0:T:87:N:0:O:2	.	2,38,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:90:G:0:T:2:N:0:O:3	.	0,49,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	9714	C	T	N	2	allele in negative control	Alarm	False	False	False	103	.	20	.	0.019417475728155338	.	A:1:C:92:G:0:T:2:N:0:O:8	.	0,74,2,29	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:83:T:0:N:0:O:1	.	4,21,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:3:G:0:T:92:N:0:O:3	.	0,34,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,58,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:1:C:93:G:0:T:4:N:0:O:4	.	1,44,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10528	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,41,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:98:C:0:G:3:T:0:N:0:O:1	.	3,32,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:67:N:0:O:14	.	0,62,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:96:G:0:T:4:N:0:O:0	.	0,59,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	10969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	1,36,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:0:C:82:G:0:T:5:N:0:O:2	.	0,65,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	11868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,64,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:0:C:0:G:104:T:4:N:0:O:51	.	0,55,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.07142857142857142	.	A:52:C:0:G:4:T:0:N:0:O:0	.	0,37,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	12181	T	C	T	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.020512820512820513	.	A:0:C:4:G:0:T:191:N:0:O:0	.	0,91,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:2:G:0:T:0:N:0:O:0	.	2,40,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:0:C:72:G:0:T:5:N:0:O:1	.	0,61,5,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:94:C:0:G:5:T:0:N:0:O:1	.	5,26,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:1:C:2:G:0:T:94:N:0:O:3	.	0,34,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:128:T:0:N:0:O:1	.	3,56,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:0:G:0:T:134:N:0:O:9	.	3,70,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:125:C:0:G:3:T:0:N:0:O:15	.	3,60,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13409	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:2:T:0:N:0:O:1	.	1,44,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:71:G:0:T:4:N:0:O:0	.	0,70,4,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:0:G:89:T:0:N:0:O:7	.	4,41,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13519	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,33,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.01652892561983471	.	A:2:C:0:G:98:T:0:N:0:O:21	.	1,48,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:3:T:0:N:0:O:0	.	2,40,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:0:G:110:T:0:N:0:O:7	.	4,44,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:140:C:0:G:0:T:3:N:0:O:0	.	0,100,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:88:T:0:N:0:O:2	.	2,18,1,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:47:C:0:G:1:T:0:N:0:O:4	.	0,8,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:97:T:0:N:0:O:0	.	3,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:0:G:114:T:3:N:0:O:0	.	3,54,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:84:G:0:T:2:N:0:O:4	.	0,73,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	105	.	20	.	0.9714285714285714	.	A:0:C:1:G:0:T:102:N:0:O:2	.	53,56,49,49	471.846	1337.6	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	2,53,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14604	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:0:G:3:T:0:N:0:O:0	.	3,62,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:104:T:0:N:0:O:0	.	3,59,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:107:C:0:G:3:T:0:N:0:O:2	.	3,71,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14839	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,64,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14840	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	3,67,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:84:C:0:G:3:T:0:N:0:O:2	.	3,43,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:101:T:0:N:0:O:0	.	3,41,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:108:T:0:N:0:O:1	.	3,50,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:0:G:121:T:3:N:0:O:1	.	0,67,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.014705882352941176	.	A:0:C:1:G:0:T:49:N:0:O:18	.	0,43,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.05263157894736842	.	A:0:C:52:G:0:T:3:N:0:O:2	.	0,34,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,86,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	16393	C	A	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:2:C:58:G:0:T:0:N:0:O:0	.	1,28,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:1:N:0:O:0	.	2,36,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:110:T:3:N:0:O:0	.	3,54,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16645	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:106:C:0:G:3:T:0:N:0:O:1	.	3,46,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,24,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:81:T:0:N:0:O:6	.	2,15,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16826	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	1,13,1,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:98:N:0:O:1	.	1,54,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:106:T:0:N:0:O:1	.	3,30,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.049723756906077346	.	A:9:C:0:G:168:T:0:N:0:O:4	.	9,35,0,146	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,69,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:1:T:70:N:0:O:4	.	2,16,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17280	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:0:G:127:T:3:N:0:O:0	.	3,61,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.06493506493506493	.	A:0:C:71:G:0:T:5:N:0:O:1	.	0,53,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:107:T:0:N:0:O:0	.	4,35,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,38,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:3:G:0:T:143:N:0:O:3	.	1,68,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17808	G	T	T	17	accept high frequency variant	Pass	False	True	True	118	.	20	.	1.0	.	A:0:C:0:G:0:T:118:N:0:O:0	.	42,42,76,76	210.0	1962.2	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.1	.	A:0:C:53:G:0:T:6:N:0:O:1	.	0,29,6,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:88:C:0:G:0:T:4:N:0:O:8	.	0,29,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.09259259259259259	.	A:10:C:0:G:98:T:0:N:0:O:0	.	0,47,10,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17878	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:96:G:0:T:2:N:0:O:7	.	1,55,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,44,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:86:T:0:N:0:O:0	.	3,14,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	18014	C	A	C	16	ignore low frequency variant	Pass	False	False	True	281	.	20	.	0.021352313167259787	.	A:6:C:271:G:0:T:0:N:0:O:4	.	0,115,6,166	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.03225806451612903	.	A:0:C:148:G:0:T:5:N:0:O:2	.	0,82,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	18634	G	T	G	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.03125	.	A:4:C:0:G:212:T:7:N:0:O:1	.	0,145,7,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	18635	T	G	T	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.02304147465437788	.	A:2:C:0:G:5:T:204:N:0:O:6	.	0,144,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,21,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:43:C:0:G:0:T:2:N:0:O:6	.	0,21,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.026041666666666668	.	A:5:C:0:G:185:T:0:N:0:O:2	.	5,30,0,162	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	19366	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:89:G:0:T:3:N:0:O:1	.	0,43,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:84:N:0:O:1	.	0,41,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	19484	C	T	N	18	ambiguous base in consensus	Check	False	False	False	49	.	20	.	0.14285714285714285	.	A:0:C:42:G:0:T:7:N:0:O:0	.	0,36,7,13	.	20.4	.	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.01652892561983471	.	A:4:C:0:G:0:T:183:N:0:O:55	.	0,63,4,179	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,20,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:0:G:2:T:71:N:0:O:1	.	0,20,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	0,29,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20129	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:119:C:3:G:0:T:0:N:0:O:0	.	0,23,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:96:G:0:T:2:N:0:O:6	.	0,29,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:0:G:3:T:92:N:0:O:1	.	3,34,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20413	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:91:N:0:O:5	.	2,30,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20713	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,49,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20714	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:104:T:0:N:0:O:2	.	3,54,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,26,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:116:T:0:N:0:O:1	.	3,45,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.07368421052631578	.	A:0:C:0:G:84:T:7:N:0:O:4	.	0,61,7,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21150	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	1,52,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:92:T:0:N:0:O:2	.	2,25,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:79:G:0:T:3:N:0:O:1	.	0,58,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,53,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:83:T:0:N:0:O:2	.	3,14,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:0:T:83:N:0:O:19	.	0,80,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:80:G:0:T:2:N:0:O:11	.	1,33,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.03597122302158273	.	A:5:C:0:G:122:T:0:N:0:O:12	.	5,69,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.025380710659898477	.	A:191:C:0:G:5:T:0:N:0:O:1	.	5,61,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:4:C:0:G:168:T:0:N:0:O:0	.	4,63,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.024242424242424242	.	A:0:C:0:G:4:T:161:N:0:O:0	.	4,46,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:0:C:179:G:0:T:4:N:0:O:1	.	0,102,4,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.031088082901554404	.	A:0:C:6:G:0:T:174:N:0:O:13	.	0,122,6,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:138:G:0:T:3:N:0:O:0	.	0,66,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22392	T	A	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:0:T:23:N:0:O:3	.	1,14,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22459	A	C	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:1:G:0:T:0:N:0:O:0	.	1,11,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:26:N:0:O:1	.	0,14,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22508	T	A	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:0:T:19:N:0:O:1	.	1,11,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.027624309392265192	.	A:0:C:0:G:175:T:5:N:0:O:1	.	0,74,5,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.04519774011299435	.	A:0:C:0:G:8:T:146:N:0:O:23	.	0,97,8,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.9318181818181818	.	A:0:C:0:G:123:T:0:N:0:O:9	.	51,60,72,72	271.69	1571.5	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:91:T:0:N:0:O:5	.	3,13,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	2,32,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	23873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:3:C:0:G:147:T:0:N:0:O:0	.	3,61,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.08247422680412371	.	A:0:C:89:G:0:T:8:N:0:O:0	.	0,62,8,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	23909	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:0:G:143:T:0:N:0:O:0	.	3,47,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.04819277108433735	.	A:157:C:0:G:0:T:8:N:0:O:1	.	8,64,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0851063829787234	.	A:8:C:0:G:0:T:86:N:0:O:0	.	8,14,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24058	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:0:T:3:N:0:O:1	.	1,23,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.07272727272727272	.	A:0:C:45:G:0:T:4:N:0:O:6	.	0,47,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:104:C:0:G:4:T:0:N:0:O:1	.	4,36,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:83:T:0:N:0:O:12	.	0,50,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24545	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:137:C:0:G:3:T:0:N:0:O:0	.	3,73,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24619	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:117:C:0:G:3:T:0:N:0:O:1	.	3,72,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:98:C:3:G:0:T:0:N:0:O:1	.	3,67,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,82,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:1:C:0:G:108:T:3:N:0:O:0	.	3,68,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:5:C:0:G:89:T:0:N:0:O:0	.	0,74,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:0:G:5:T:91:N:0:O:0	.	0,74,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25062	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	2,35,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25089	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:117:N:0:O:0	.	0,68,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25164	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	0,40,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25360	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:85:C:0:G:2:T:0:N:0:O:6	.	0,16,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:99:C:0:G:4:T:0:N:0:O:3	.	4,29,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:80:G:0:T:2:N:0:O:5	.	0,68,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:0:C:0:G:111:T:4:N:0:O:21	.	4,71,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:0:G:5:T:105:N:0:O:1	.	5,45,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	121	.	20	.	1.0	.	A:0:C:0:G:0:T:121:N:0:O:0	.	51,51,70,70	350.0	1907.9	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:70:G:0:T:0:N:0:O:39	.	2,35,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:49:C:2:G:0:T:0:N:0:O:1	.	1,27,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:94:G:0:T:4:N:0:O:0	.	0,56,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:0:T:97:N:0:O:0	.	2,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:2:T:0:N:0:O:1	.	2,15,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:79:N:0:O:4	.	0,57,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,14,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,43,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26356	C	G	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:97:G:2:T:1:N:0:O:8	.	0,73,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.016260162601626018	.	A:0:C:87:G:0:T:2:N:0:O:34	.	0,97,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	26422	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:0:T:90:N:0:O:0	.	0,67,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:4:C:0:G:90:T:0:N:0:O:0	.	4,29,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.04672897196261682	.	A:0:C:203:G:0:T:10:N:0:O:1	.	0,168,10,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:118:N:0:O:1	.	0,90,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:98:C:0:G:0:T:5:N:0:O:3	.	5,42,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.0975609756097561	.	A:8:C:0:G:74:T:0:N:0:O:0	.	8,18,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:0:C:95:G:0:T:8:N:0:O:2	.	0,80,8,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:109:G:0:T:3:N:0:O:7	.	0,82,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.13513513513513514	.	A:0:C:62:G:0:T:10:N:0:O:2	.	0,53,10,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:73:G:0:T:2:N:0:O:5	.	0,56,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:4:G:0:T:98:N:0:O:1	.	0,45,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:192:C:0:G:0:T:4:N:0:O:1	.	2,66,2,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27678	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:120:C:0:G:3:T:0:N:0:O:2	.	3,73,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.08163265306122448	.	A:8:C:88:G:0:T:0:N:0:O:2	.	8,58,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.045454545454545456	.	A:118:C:0:G:0:T:7:N:0:O:29	.	7,105,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:5:C:0:G:100:T:0:N:0:O:0	.	5,36,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:101:C:0:G:5:T:0:N:0:O:0	.	5,36,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:92:G:0:T:4:N:0:O:1	.	0,65,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	28476	G	C	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:124:T:0:N:0:O:0	.	3,66,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	28586	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,58,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:75:G:0:T:2:N:0:O:3	.	0,36,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	28840	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:122:N:0:O:1	.	0,34,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,33,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:67:G:0:T:2:N:0:O:6	.	0,26,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29021	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:131:N:0:O:11	.	0,112,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:92:G:0:T:2:N:0:O:3	.	1,40,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	1,35,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:1:C:2:G:74:T:0:N:0:O:0	.	0,36,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:51:C:0:G:2:T:0:N:0:O:1	.	2,4,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:94:T:0:N:0:O:1	.	4,14,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:102:T:0:N:0:O:18	.	3,37,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29745	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	2,39,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	29821	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:0:T:121:N:0:O:0	.	2,73,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00078	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	141	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00078	artic-pipeline	NB12	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	141	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	106	C	T	T	14	new position at high frequency	Pass	False	True	True	32	.	20	.	0.9375	.	A:0:C:1:G:0:T:30:N:0:O:1	.	3,3,27,29	489.237	841.2	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	137	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:32:N:0:O:1	.	0,6,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:31:G:0:T:1:N:0:O:2	.	0,4,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	142	A	C	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:1:G:0:T:0:N:0:O:0	.	0,6,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	193	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:19:G:1:T:1:N:0:O:0	.	0,4,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	196	A	T	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:0:T:1:N:0:O:0	.	0,5,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:28:G:0:T:1:N:0:O:0	.	0,6,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	33	.	20	.	0.9090909090909091	.	A:0:C:0:G:1:T:30:N:0:O:2	.	6,8,24,25	624.466	1302.5	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	247	G	C	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:32:T:0:N:0:O:4	.	0,6,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	0,4,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	298	A	T	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:25:C:0:G:0:T:1:N:0:O:1	.	0,4,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	302	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,3,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:0:N:0:O:1	.	2,57,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	615	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:91:G:1:T:2:N:0:O:2	.	0,57,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	1,36,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1005	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:34:C:0:G:1:T:0:N:0:O:1	.	0,16,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:39:T:0:N:0:O:1	.	1,10,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:2:C:0:G:39:T:0:N:0:O:9	.	1,13,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:2:C:0:G:41:T:1:N:0:O:5	.	2,19,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:68:T:0:N:0:O:8	.	2,45,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:2:C:0:G:53:T:0:N:0:O:0	.	2,29,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:83:G:0:T:4:N:0:O:1	.	0,44,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1508	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:105:T:0:N:0:O:1	.	3,28,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:80:G:0:T:0:N:0:O:24	.	2,73,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	1,1,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:5:G:0:T:93:N:0:O:1	.	1,49,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:62:C:0:G:2:T:0:N:0:O:0	.	1,11,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.050359712230215826	.	A:7:C:0:G:117:T:0:N:0:O:15	.	3,64,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,2,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:116:G:0:T:3:N:0:O:0	.	0,72,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.05504587155963303	.	A:6:C:0:G:103:T:0:N:0:O:0	.	6,34,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,79,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:105:G:0:T:4:N:0:O:3	.	0,102,4,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	2850	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:3:G:0:T:140:N:0:O:0	.	0,88,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:75:C:2:G:0:T:0:N:0:O:0	.	1,29,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	129	.	20	.	0.8217054263565892	.	A:0:C:0:G:0:T:106:N:0:O:23	.	54,77,52,52	268.931	1408.7	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:69:T:2:N:0:O:14	.	0,60,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:86:C:0:G:3:T:0:N:0:O:3	.	3,10,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:1:C:0:G:2:T:92:N:0:O:1	.	2,14,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:82:G:0:T:2:N:0:O:2	.	0,39,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:86:G:0:T:3:N:0:O:0	.	0,68,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:72:N:0:O:15	.	0,34,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:1:C:0:G:91:T:2:N:0:O:2	.	2,40,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.07865168539325842	.	A:7:C:0:G:79:T:0:N:0:O:3	.	0,43,7,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,32,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4255	G	A	A	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	0.9912280701754386	.	A:113:C:0:G:1:T:0:N:0:O:0	.	18,18,95,96	275.463	1861.4	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:42:G:0:T:1:N:0:O:3	.	0,30,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.05357142857142857	.	A:0:C:0:G:146:T:9:N:0:O:13	.	0,116,9,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:0:G:115:T:3:N:0:O:28	.	0,126,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.020100502512562814	.	A:0:C:184:G:0:T:4:N:0:O:11	.	0,98,4,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:96:C:0:G:0:T:2:N:0:O:7	.	0,58,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:96:T:0:N:0:O:1	.	3,46,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:113:G:0:T:4:N:0:O:5	.	0,86,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,77,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	5090	C	T	T	14	new position at high frequency	Pass	False	True	True	114	.	20	.	0.9824561403508771	.	A:1:C:0:G:0:T:112:N:0:O:1	.	58,59,54,55	209.237	1013.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	1,41,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.09722222222222222	.	A:0:C:63:G:0:T:7:N:0:O:2	.	0,56,7,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:3:G:0:T:72:N:0:O:1	.	0,48,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	1,18,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	5813	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:89:T:0:N:0:O:2	.	2,29,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.12643678160919541	.	A:0:C:74:G:0:T:11:N:0:O:2	.	0,58,11,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:96:G:0:T:3:N:0:O:1	.	0,54,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,30,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:0:C:2:G:0:T:98:N:0:O:14	.	0,47,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:94:T:1:N:0:O:2	.	2,32,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:3:G:0:T:118:N:0:O:0	.	0,89,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:142:C:0:G:3:T:0:N:0:O:0	.	3,62,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6538	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:43:G:0:T:1:N:0:O:2	.	1,29,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.04878048780487805	.	A:0:C:39:G:0:T:2:N:0:O:0	.	1,27,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6542	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:0:T:1:N:0:O:0	.	1,26,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6556	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:0:T:39:N:0:O:0	.	1,24,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6557	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	1,25,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.08163265306122448	.	A:0:C:0:G:4:T:42:N:0:O:3	.	0,28,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.05555555555555555	.	A:0:C:3:G:0:T:50:N:0:O:1	.	0,31,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6684	A	C	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:53:C:2:G:0:T:0:N:0:O:0	.	0,24,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:2:C:0:G:45:T:0:N:0:O:2	.	2,21,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0410958904109589	.	A:131:C:0:G:6:T:1:N:0:O:8	.	6,48,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:150:C:0:G:4:T:0:N:0:O:0	.	4,52,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:123:G:0:T:3:N:0:O:2	.	0,85,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6829	T	G	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:2:C:1:G:4:T:137:N:0:O:3	.	0,71,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6830	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:137:C:2:G:0:T:3:N:0:O:2	.	0,73,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,19,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6859	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:96:C:0:G:3:T:0:N:0:O:0	.	3,30,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,40,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6878	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:96:C:0:G:2:T:0:N:0:O:7	.	2,39,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,30,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	6889	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:94:C:0:G:1:T:3:N:0:O:8	.	0,50,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.08695652173913043	.	A:62:C:0:G:0:T:6:N:0:O:1	.	0,53,6,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	7036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:96:C:0:G:3:T:1:N:0:O:3	.	2,47,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0821917808219178	.	A:6:C:0:G:65:T:0:N:0:O:2	.	6,19,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	7487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,42,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	3,36,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:75:G:0:T:2:N:0:O:19	.	0,76,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:3:G:0:T:61:N:0:O:7	.	0,42,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:70:G:0:T:3:N:0:O:2	.	0,43,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	7813	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.015873015873015872	.	A:0:C:2:G:0:T:93:N:0:O:31	.	1,55,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.05825242718446602	.	A:94:C:6:G:0:T:0:N:0:O:3	.	0,46,6,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:4:G:0:T:92:N:0:O:0	.	1,47,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,47,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	2,29,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:5:C:1:G:67:T:0:N:0:O:1	.	4,7,1,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	2,40,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:6:C:0:G:0:T:82:N:0:O:4	.	5,29,1,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:5:C:0:G:102:T:0:N:0:O:0	.	5,36,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:73:G:0:T:2:N:0:O:0	.	2,18,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:108:G:0:T:3:N:0:O:1	.	0,57,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	9384	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:92:G:0:T:2:N:0:O:7	.	0,39,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:0:T:111:N:0:O:0	.	0,48,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9665	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:76:G:0:T:3:N:0:O:1	.	0,62,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9714	C	A	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:66:G:0:T:0:N:0:O:6	.	2,57,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9747	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:92:N:0:O:6	.	0,79,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	9798	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:85:G:0:T:3:N:0:O:1	.	0,61,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10112	G	A	G	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.022935779816513763	.	A:5:C:0:G:213:T:0:N:0:O:0	.	5,95,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10305	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:0:T:2:N:0:O:0	.	2,40,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:78:T:0:N:0:O:0	.	4,21,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,53,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:105:C:0:G:3:T:0:N:0:O:2	.	3,37,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:85:N:0:O:9	.	0,69,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.07920792079207921	.	A:0:C:92:G:1:T:8:N:0:O:0	.	0,62,8,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:95:N:0:O:2	.	0,56,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:2:C:97:G:0:T:0:N:0:O:16	.	2,53,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:1:T:25:N:0:O:0	.	1,6,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:68:G:0:T:2:N:0:O:6	.	0,60,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:1:C:0:G:2:T:88:N:0:O:1	.	0,30,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:98:T:2:N:0:O:1	.	2,46,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:108:C:0:G:0:T:5:N:0:O:0	.	5,58,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11845	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:2:G:0:T:61:N:0:O:5	.	1,35,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11887	A	C	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:63:C:3:G:0:T:0:N:0:O:0	.	3,36,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11889	T	G	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:0:G:2:T:65:N:0:O:0	.	2,33,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.015228426395939087	.	A:0:C:0:G:129:T:3:N:0:O:65	.	0,66,3,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:2:T:0:N:0:O:0	.	0,36,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:0:C:66:G:0:T:6:N:0:O:24	.	0,66,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:86:T:0:N:0:O:2	.	5,19,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	12658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:74:C:0:G:2:T:0:N:0:O:1	.	2,28,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:0:C:78:G:0:T:4:N:0:O:1	.	0,66,4,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:0:G:2:T:0:N:0:O:3	.	2,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:95:G:0:T:3:N:0:O:0	.	0,54,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.10227272727272728	.	A:1:C:77:G:0:T:9:N:0:O:1	.	0,74,9,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,59,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:5:C:0:G:89:T:0:N:0:O:13	.	5,51,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,41,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:87:G:0:T:0:N:0:O:7	.	3,51,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,45,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13806	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	2,39,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:0:G:1:T:0:N:0:O:1	.	0,0,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	3,26,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:1:C:0:G:108:T:3:N:0:O:0	.	3,31,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:85:G:0:T:2:N:0:O:4	.	0,74,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14287	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:80:N:0:O:1	.	1,74,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	3,47,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	101	.	20	.	1.0	.	A:0:C:0:G:0:T:101:N:0:O:0	.	59,59,42,42	335.463	1324.1	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	2,37,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:96:G:0:T:2:N:0:O:11	.	0,77,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,46,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:103:N:0:O:4	.	0,68,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	2,52,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:94:G:0:T:2:N:0:O:10	.	0,53,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	15073	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	0,46,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:89:T:1:N:0:O:1	.	5,28,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	15082	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:3:T:0:N:0:O:1	.	3,46,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	15083	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:0:T:104:N:0:O:0	.	3,40,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	15422	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:92:C:2:G:0:T:1:N:0:O:2	.	2,49,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:104:N:0:O:0	.	0,62,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.10526315789473684	.	A:0:C:51:G:0:T:6:N:0:O:0	.	0,28,6,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:103:G:0:T:3:N:0:O:2	.	0,59,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	16217	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,14,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,19,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.015873015873015872	.	A:0:C:48:G:0:T:1:N:0:O:14	.	0,38,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16289	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:48:G:0:T:1:N:0:O:0	.	0,26,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	16408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:41:C:0:G:0:T:1:N:0:O:2	.	1,13,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:0:G:76:T:3:N:0:O:2	.	3,32,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,55,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16664	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:2:T:0:N:0:O:1	.	2,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:85:T:0:N:0:O:4	.	2,30,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16823	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:34:T:0:N:0:O:1	.	1,19,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:0:G:5:T:86:N:0:O:0	.	0,39,5,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.024242424242424242	.	A:4:C:0:G:122:T:0:N:0:O:39	.	0,53,4,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.05084745762711865	.	A:9:C:0:G:164:T:0:N:0:O:4	.	9,29,0,148	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:0:C:181:G:0:T:5:N:0:O:3	.	2,74,3,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:54:C:0:G:2:T:0:N:0:O:1	.	2,8,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:0:T:56:N:0:O:1	.	2,9,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:89:C:0:G:3:T:0:N:0:O:1	.	3,46,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:74:G:0:T:3:N:0:O:0	.	0,51,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,19,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:90:G:0:T:3:N:0:O:0	.	0,51,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,41,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.028089887640449437	.	A:0:C:173:G:0:T:5:N:0:O:0	.	1,86,4,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:78:G:0:T:3:N:0:O:1	.	0,39,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:8:C:0:G:91:T:0:N:0:O:1	.	0,49,8,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:107:G:0:T:3:N:0:O:2	.	0,46,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,41,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,24,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	18099	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:89:N:0:O:5	.	0,45,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	18245	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:123:C:0:G:0:T:4:N:0:O:13	.	4,52,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	18346	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:106:C:0:G:3:T:0:N:0:O:2	.	3,51,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:80:G:0:T:2:N:0:O:6	.	2,18,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:0:C:0:G:3:T:66:N:0:O:0	.	2,21,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	18871	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:94:C:2:G:0:T:0:N:0:O:3	.	0,38,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.057692307692307696	.	A:6:C:0:G:97:T:0:N:0:O:1	.	5,24,1,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.037037037037037035	.	A:6:C:0:G:0:T:126:N:0:O:30	.	0,66,6,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:96:C:0:G:0:T:5:N:0:O:0	.	0,58,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	19793	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:94:T:2:N:0:O:0	.	2,45,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:0:G:2:T:71:N:0:O:1	.	0,31,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	20725	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:0:G:134:T:0:N:0:O:12	.	3,79,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	20888	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:92:T:0:N:0:O:2	.	2,35,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:90:C:0:G:3:T:0:N:0:O:3	.	3,29,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	20905	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,31,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	20940	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:0:G:103:T:3:N:0:O:0	.	3,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:90:G:0:T:2:N:0:O:2	.	0,45,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:66:C:0:G:2:T:0:N:0:O:0	.	0,4,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:90:T:0:N:0:O:12	.	0,17,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:0:C:0:G:64:T:5:N:0:O:4	.	0,54,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,48,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:0:T:25:N:0:O:16	.	1,34,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:110:G:0:T:3:N:0:O:10	.	0,97,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:0:T:3:N:0:O:0	.	0,49,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:116:C:0:G:3:T:0:N:0:O:2	.	3,45,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:112:T:0:N:0:O:0	.	2,64,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:0:G:120:T:0:N:0:O:0	.	4,60,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:1:G:3:T:108:N:0:O:0	.	3,37,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:112:G:0:T:4:N:0:O:2	.	0,76,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	22782	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:123:N:0:O:1	.	0,55,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	23099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:120:G:0:T:3:N:0:O:9	.	0,104,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	0.9508196721311475	.	A:0:C:0:G:116:T:0:N:0:O:6	.	60,66,56,56	419.237	1543.2	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:99:C:0:G:3:T:0:N:0:O:0	.	3,54,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	23595	C	T	T	14	new position at high frequency	Pass	False	True	True	120	.	20	.	1.0	.	A:0:C:0:G:0:T:120:N:0:O:0	.	63,63,57,57	70.0	994.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	23603	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:80:G:0:T:3:N:0:O:2	.	0,55,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:82:C:0:G:2:T:0:N:0:O:1	.	2,32,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.20481927710843373	.	A:0:C:66:G:0:T:17:N:0:O:0	.	0,50,17,33	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:82:G:0:T:2:N:0:O:9	.	0,39,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.06493506493506493	.	A:0:C:72:G:0:T:5:N:0:O:0	.	0,47,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:99:G:0:T:3:N:0:O:0	.	0,43,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,21,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:1:C:86:G:0:T:2:N:0:O:3	.	0,40,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:66:G:0:T:3:N:0:O:4	.	0,64,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:65:G:0:T:2:N:0:O:4	.	0,62,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	0,56,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:0:G:3:T:84:N:0:O:3	.	0,57,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	24982	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:42:N:0:O:2	.	1,31,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,46,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,48,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:109:C:0:G:0:T:4:N:0:O:1	.	4,41,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:66:G:0:T:2:N:0:O:3	.	1,41,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:67:G:0:T:2:N:0:O:2	.	0,51,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:91:G:0:T:0:N:0:O:9	.	2,40,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25704	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	2,56,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:0:G:60:T:0:N:0:O:0	.	2,14,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.017094017094017096	.	A:2:C:72:G:1:T:0:N:0:O:42	.	2,43,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.08620689655172414	.	A:52:C:5:G:0:T:0:N:0:O:1	.	1,35,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:71:C:0:G:0:T:2:N:0:O:2	.	0,55,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:107:C:0:G:4:T:0:N:0:O:1	.	4,54,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:64:C:0:G:4:T:0:N:0:O:2	.	4,22,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	2,50,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:2:T:0:N:0:O:1	.	2,38,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:5:C:0:G:80:T:0:N:0:O:0	.	5,29,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:3:T:0:N:0:O:0	.	3,50,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:73:G:0:T:2:N:0:O:30	.	0,86,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:43:N:0:O:1	.	0,41,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,32,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,21,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.03773584905660377	.	A:0:C:153:G:0:T:6:N:0:O:0	.	0,132,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.025510204081632654	.	A:0:C:5:G:0:T:191:N:0:O:0	.	0,135,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:129:C:0:G:4:T:0:N:0:O:1	.	0,73,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,47,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26603	A	C	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.12195121951219512	.	A:108:C:15:G:0:T:0:N:0:O:0	.	14,70,1,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26703	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	2,46,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:0:T:2:N:0:O:0	.	2,18,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.1095890410958904	.	A:8:C:0:G:65:T:0:N:0:O:0	.	8,10,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:80:G:0:T:3:N:0:O:0	.	0,65,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26754	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	2,44,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:1:G:91:T:0:N:0:O:0	.	2,30,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	3,21,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:87:G:0:T:3:N:0:O:3	.	0,61,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	27180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.020512820512820513	.	A:0:C:188:G:0:T:4:N:0:O:3	.	0,107,4,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	27224	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,31,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	27306	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:124:G:0:T:3:N:0:O:1	.	0,77,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	27590	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:91:G:0:T:2:N:0:O:4	.	0,38,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:70:G:0:T:0:N:0:O:3	.	2,24,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	28151	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:1:G:0:T:84:N:0:O:1	.	0,64,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:0:T:74:N:0:O:1	.	0,48,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:88:G:0:T:0:N:0:O:5	.	3,71,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:78:G:0:T:2:N:0:O:2	.	0,30,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:0:T:2:N:0:O:2	.	0,38,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	121	.	20	.	1.0	.	A:121:C:0:G:0:T:0:N:0:O:0	.	35,35,86,86	203.216	2336.3	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	116	.	20	.	1.0	.	A:116:C:0:G:0:T:0:N:0:O:0	.	30,30,86,86	203.216	2336.3	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	1.0	.	A:0:C:117:G:0:T:0:N:0:O:0	.	32,32,85,85	203.216	2336.3	.	.	.	.	.	.	.	.	.
MDHP-00079	artic-pipeline	NB01	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:1:G:0:T:0:N:0:O:0	.	0,5,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:70:T:0:N:0:O:3	.	2,5,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:125:G:0:T:0:N:0:O:5	.	3,77,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	29522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.02926829268292683	.	A:194:C:0:G:6:T:0:N:0:O:5	.	6,102,0,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	29746	A	T	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.017543859649122806	.	A:48:C:0:G:0:T:1:N:0:O:8	.	1,30,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00079	artic-pipeline	NB01	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	300	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.08064516129032258	.	A:0:C:57:G:0:T:5:N:0:O:0	.	0,5,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	100	C	G	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:0:C:25:G:1:T:0:N:0:O:36	.	0,44,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	120	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:81:N:0:O:1	.	0,8,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	121	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,8,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	89	.	20	.	0.9662921348314607	.	A:0:C:0:G:0:T:86:N:0:O:3	.	5,8,81,81	69.237	2140.2	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:2:G:0:T:63:N:0:O:1	.	0,32,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,36,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:89:T:0:N:0:O:4	.	0,56,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:95:T:1:N:0:O:3	.	3,18,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.0625	.	A:3:C:0:G:42:T:0:N:0:O:3	.	3,18,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.9924242424242424	.	A:0:C:1:G:0:T:131:N:0:O:0	.	103,103,28,29	348.474	1578.5	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	1160	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:94:C:0:G:4:T:0:N:0:O:3	.	4,72,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,18,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	0,9,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	1626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:2:G:0:T:59:N:0:O:2	.	0,31,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:5:C:75:G:0:T:0:N:0:O:37	.	0,44,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:5:C:75:G:0:T:0:N:0:O:37	.	0,44,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,30,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:0:G:81:T:2:N:0:O:0	.	0,22,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:43:T:0:N:0:O:0	.	0,27,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:49:C:0:G:0:T:2:N:0:O:0	.	0,25,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:4:G:0:T:116:N:0:O:1	.	0,26,4,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1795	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:3:T:0:N:0:O:0	.	0,25,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:114:T:0:N:0:O:1	.	0,16,3,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,32,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1918	T	C	T	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.02336448598130841	.	A:0:C:5:G:0:T:207:N:0:O:2	.	0,75,5,139	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:77:G:0:T:2:N:0:O:0	.	0,40,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:71:G:0:T:2:N:0:O:5	.	0,44,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:6:C:0:G:113:T:0:N:0:O:0	.	6,23,0,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	2250	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:119:T:0:N:0:O:1	.	3,59,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:74:T:0:N:0:O:0	.	1,21,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:79:T:0:N:0:O:1	.	2,14,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	2627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:101:G:0:T:3:N:0:O:1	.	0,78,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2713	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	1,38,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:113:C:0:G:6:T:0:N:0:O:0	.	6,54,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:109:G:0:T:3:N:0:O:3	.	0,87,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:111:N:0:O:0	.	0,89,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:131:N:0:O:0	.	0,73,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	127	.	20	.	0.6929133858267716	.	A:0:C:0:G:0:T:88:N:0:O:39	.	52,91,36,36	55.257	1475.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:1:C:4:G:0:T:96:N:0:O:1	.	2,67,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:0:C:75:G:0:T:4:N:0:O:3	.	0,29,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:79:G:0:T:2:N:0:O:6	.	0,26,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:48:C:0:G:0:T:1:N:0:O:4	.	1,16,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:99:T:0:N:0:O:1	.	3,24,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:86:G:0:T:3:N:0:O:1	.	0,66,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:0:G:80:T:3:N:0:O:8	.	2,44,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.06666666666666667	.	A:5:C:0:G:70:T:0:N:0:O:0	.	1,40,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,47,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:93:G:0:T:4:N:0:O:0	.	0,42,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	4174	T	A	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:2:C:1:G:0:T:76:N:0:O:27	.	1,58,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.017094017094017096	.	A:2:C:0:G:0:T:88:N:0:O:27	.	0,45,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.05504587155963303	.	A:0:C:0:G:198:T:12:N:0:O:8	.	0,156,12,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:95:G:0:T:2:N:0:O:3	.	0,44,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:91:G:0:T:3:N:0:O:5	.	0,53,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:0:C:0:G:5:T:114:N:0:O:2	.	0,49,5,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:78:G:0:T:2:N:0:O:1	.	0,50,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:0:G:3:T:132:N:0:O:10	.	0,57,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	5097	A	T	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:68:C:0:G:0:T:2:N:0:O:0	.	0,57,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:98:T:2:N:0:O:3	.	2,46,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	5627	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:0:G:2:T:0:N:0:O:2	.	2,53,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	5872	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:82:C:0:G:2:T:0:N:0:O:1	.	2,37,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:1:N:0:O:1	.	2,13,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:0:C:98:G:0:T:5:N:0:O:0	.	0,61,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.16470588235294117	.	A:0:C:69:G:0:T:14:N:0:O:2	.	0,54,14,31	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	2,24,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	0,49,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,43,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6262	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:75:N:0:O:5	.	0,49,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:71:N:0:O:0	.	0,40,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6462	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:0:T:97:N:0:O:2	.	0,38,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6463	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.01680672268907563	.	A:2:C:0:G:87:T:0:N:0:O:30	.	0,24,2,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:70:G:0:T:3:N:0:O:1	.	3,56,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.020512820512820513	.	A:186:C:0:G:4:T:1:N:0:O:4	.	4,86,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.09259259259259259	.	A:49:C:0:G:0:T:5:N:0:O:0	.	0,21,5,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:89:T:0:N:0:O:0	.	3,58,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:0:C:0:G:3:T:69:N:0:O:0	.	2,40,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	7400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:1:N:0:O:0	.	2,66,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.17307692307692307	.	A:9:C:0:G:42:T:0:N:0:O:1	.	9,19,0,33	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	7514	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	1,62,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:89:N:0:O:7	.	0,47,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:105:N:0:O:4	.	0,60,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:4:G:1:T:104:N:0:O:0	.	0,42,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:115:N:0:O:0	.	0,49,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	8190	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:3:G:0:T:135:N:0:O:0	.	0,54,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:88:T:0:N:0:O:4	.	2,43,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:4:G:0:T:101:N:0:O:2	.	0,81,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:97:G:0:T:2:N:0:O:3	.	0,53,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	8878	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:108:G:0:T:0:N:0:O:5	.	0,38,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:0:T:91:N:0:O:9	.	2,58,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	3,41,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:110:G:0:T:4:N:0:O:0	.	0,102,4,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.048	.	A:0:C:6:G:0:T:115:N:0:O:4	.	0,101,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:1:N:0:O:0	.	2,32,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9628	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	1,23,0,0	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:76:G:0:T:2:N:0:O:6	.	0,43,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,35,1,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:74:T:0:N:0:O:0	.	2,12,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:84:G:0:T:3:N:0:O:6	.	3,19,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:0:T:91:N:0:O:0	.	0,40,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:85:G:0:T:5:N:0:O:0	.	0,25,5,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:102:T:0:N:0:O:2	.	2,9,2,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:119:C:0:G:3:T:0:N:0:O:1	.	3,21,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	10609	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:0:G:2:T:70:N:0:O:0	.	0,27,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:88:N:0:O:4	.	0,68,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.07207207207207207	.	A:0:C:103:G:0:T:8:N:0:O:0	.	0,74,8,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:0:G:5:T:103:N:0:O:5	.	0,69,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11098	T	A	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:0:T:44:N:0:O:0	.	0,10,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11138	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:1:C:0:G:89:T:3:N:0:O:1	.	0,15,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11297	A	T	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:0:G:0:T:2:N:0:O:0	.	0,12,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11298	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:0:G:0:T:2:N:0:O:0	.	0,12,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11445	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:0:T:77:N:0:O:1	.	0,48,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:67:C:0:G:3:T:0:N:0:O:1	.	3,36,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11739	C	G	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:81:G:2:T:0:N:0:O:3	.	0,40,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11740	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:70:C:0:G:2:T:0:N:0:O:0	.	0,28,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:68:T:0:N:0:O:0	.	0,30,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:0:G:90:T:3:N:0:O:49	.	0,42,3,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.07894736842105263	.	A:35:C:0:G:3:T:0:N:0:O:0	.	0,24,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:0:C:47:G:0:T:3:N:0:O:13	.	0,43,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:71:C:0:G:2:T:0:N:0:O:2	.	2,23,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:69:T:0:N:0:O:3	.	4,24,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12452	C	A	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:4:C:149:G:0:T:1:N:0:O:1	.	0,88,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12453	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:143:G:0:T:3:N:0:O:3	.	0,94,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:142:G:0:T:3:N:0:O:4	.	0,104,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:4:C:83:G:0:T:0:N:0:O:0	.	0,52,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	1,60,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.09876543209876543	.	A:0:C:73:G:0:T:8:N:0:O:0	.	0,61,8,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,32,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.08	.	A:0:C:68:G:0:T:6:N:0:O:1	.	0,47,6,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:0:G:85:T:0:N:0:O:2	.	5,40,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.07792207792207792	.	A:0:C:69:G:0:T:6:N:0:O:2	.	0,66,6,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:81:T:0:N:0:O:9	.	3,37,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:82:N:0:O:1	.	0,42,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.016666666666666666	.	A:2:C:1:G:0:T:96:N:0:O:21	.	1,50,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13587	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:0:T:2:N:0:O:0	.	0,62,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:83:T:0:N:0:O:7	.	3,27,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,48,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,62,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13693	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:102:C:0:G:3:T:0:N:0:O:1	.	3,68,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13758	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:120:C:0:G:3:T:0:N:0:O:0	.	3,84,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13759	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:123:T:0:N:0:O:0	.	3,86,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:1:T:0:N:0:O:1	.	1,12,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:55:T:0:N:0:O:2	.	2,21,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:27:C:0:G:1:T:0:N:0:O:2	.	0,6,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:98:N:0:O:3	.	2,36,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	14230	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.11206896551724138	.	A:0:C:103:G:0:T:13:N:0:O:0	.	10,56,3,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	106	.	20	.	1.0	.	A:0:C:0:G:0:T:106:N:0:O:0	.	53,53,53,53	338.097	1395.3	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:108:G:0:T:3:N:0:O:0	.	0,91,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,50,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	14676	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,78,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:4:C:0:G:68:T:0:N:0:O:1	.	4,27,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:0:C:4:G:0:T:77:N:0:O:1	.	0,77,4,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15288	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:122:N:0:O:1	.	0,89,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	0,55,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	0,88,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15670	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:134:T:0:N:0:O:1	.	3,77,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:132:C:0:G:4:T:0:N:0:O:0	.	4,73,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15758	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:0:G:3:T:0:N:0:O:0	.	1,71,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.07272727272727272	.	A:1:C:50:G:0:T:4:N:0:O:0	.	0,23,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	15953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	2,47,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	15955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	1,60,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:97:G:0:T:2:N:0:O:2	.	0,60,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	16241	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,46,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	16262	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:2:G:1:T:0:N:0:O:0	.	0,45,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	16742	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:109:N:0:O:1	.	0,78,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:69:T:0:N:0:O:9	.	2,25,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:4:T:99:N:0:O:2	.	0,69,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	17063	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	1,32,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.019230769230769232	.	A:145:C:0:G:3:T:0:N:0:O:8	.	3,49,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.06993006993006994	.	A:10:C:0:G:131:T:0:N:0:O:2	.	10,33,0,110	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.02577319587628866	.	A:185:C:0:G:5:T:1:N:0:O:3	.	5,78,0,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.06329113924050633	.	A:0:C:74:G:0:T:5:N:0:O:0	.	0,51,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.05555555555555555	.	A:6:C:0:G:102:T:0:N:0:O:0	.	0,66,6,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	18014	C	A	C	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.02092050209205021	.	A:5:C:231:G:0:T:0:N:0:O:3	.	0,104,5,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:73:T:0:N:0:O:0	.	3,16,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:36:C:0:G:0:T:1:N:0:O:5	.	0,17,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:84:N:0:O:0	.	2,31,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.043478260869565216	.	A:8:C:0:G:174:T:0:N:0:O:2	.	7,39,1,145	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:59:G:0:T:3:N:0:O:0	.	0,46,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,55,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.03431372549019608	.	A:7:C:1:G:0:T:155:N:0:O:41	.	0,56,7,148	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04838709677419355	.	A:118:C:0:G:0:T:6:N:0:O:0	.	0,53,6,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	0,50,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.06557377049180328	.	A:0:C:0:G:4:T:55:N:0:O:2	.	0,13,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:79:G:0:T:3:N:0:O:2	.	0,19,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:135:C:0:G:4:T:0:N:0:O:3	.	2,64,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:4:C:184:G:0:T:0:N:0:O:1	.	0,76,4,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:180:C:0:G:4:T:0:N:0:O:0	.	4,60,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:91:C:0:G:3:T:0:N:0:O:2	.	3,32,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,45,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.06976744186046512	.	A:0:C:0:G:67:T:6:N:0:O:13	.	0,64,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:91:G:0:T:3:N:0:O:0	.	0,56,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:2:T:0:N:0:O:0	.	2,2,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:99:T:0:N:0:O:2	.	4,16,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:80:N:0:O:13	.	0,60,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,47,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:3:G:0:T:0:N:0:O:0	.	2,43,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:96:G:0:T:2:N:0:O:5	.	0,90,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,41,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04838709677419355	.	A:6:C:0:G:112:T:0:N:0:O:6	.	6,69,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	21794	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:86:C:0:G:2:T:0:N:0:O:2	.	2,39,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.028409090909090908	.	A:170:C:0:G:5:T:0:N:0:O:1	.	4,83,1,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.03804347826086957	.	A:7:C:0:G:177:T:0:N:0:O:0	.	7,110,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.040697674418604654	.	A:1:C:0:G:7:T:164:N:0:O:0	.	6,83,1,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	22493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	0,9,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:0:G:2:T:42:N:0:O:1	.	2,14,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	22522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	1,11,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:1:C:3:G:0:T:121:N:0:O:1	.	1,116,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	265	.	20	.	0.018867924528301886	.	A:1:C:0:G:5:T:220:N:0:O:39	.	0,177,5,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:57:C:0:G:2:T:0:N:0:O:0	.	1,37,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23299	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:0:T:2:N:0:O:0	.	2,54,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,53,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	0.9857142857142858	.	A:0:C:0:G:138:T:0:N:0:O:2	.	97,99,41,41	130.786	1621.5	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0898876404494382	.	A:8:C:0:G:76:T:0:N:0:O:5	.	8,22,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23610	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23874	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	66	.	20	.	0.25757575757575757	.	A:0:C:48:G:0:T:17:N:0:O:1	.	0,40,17,26	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:0:T:84:N:0:O:0	.	3,9,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:84:N:0:O:2	.	1,9,1,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	23997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:72:G:0:T:3:N:0:O:2	.	0,36,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:51:G:0:T:2:N:0:O:0	.	0,36,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:70:G:0:T:2:N:0:O:1	.	0,55,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.07936507936507936	.	A:0:C:53:G:0:T:5:N:0:O:5	.	0,55,5,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:0:N:0:O:1	.	2,15,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:1:C:127:G:0:T:3:N:0:O:2	.	0,42,3,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:2:G:0:T:0:N:0:O:0	.	2,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	24956	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:83:C:0:G:0:T:2:N:0:O:1	.	2,64,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:0:T:2:N:0:O:0	.	2,32,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:0:G:97:T:2:N:0:O:10	.	2,43,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:0:G:4:T:96:N:0:O:1	.	4,38,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	107	.	20	.	1.0	.	A:0:C:0:G:0:T:107:N:0:O:0	.	37,37,70,70	209.237	1757.4	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	25602	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	1,28,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25611	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:76:G:0:T:2:N:0:O:3	.	0,50,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:94:N:0:O:0	.	0,48,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	2,14,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,47,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.014285714285714285	.	A:2:C:91:G:0:T:0:N:0:O:47	.	2,38,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.1	.	A:59:C:7:G:0:T:0:N:0:O:4	.	1,31,6,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.07058823529411765	.	A:0:C:76:G:0:T:6:N:0:O:3	.	0,48,6,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25840	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,53,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:2:T:0:N:0:O:3	.	2,29,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:96:C:0:G:3:T:0:N:0:O:3	.	3,25,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:0:T:2:N:0:O:3	.	0,46,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,26,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:92:T:0:N:0:O:2	.	2,45,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.014814814814814815	.	A:0:C:96:G:0:T:2:N:0:O:37	.	0,121,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,67,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.03286384976525822	.	A:7:C:0:G:1:T:205:N:0:O:0	.	7,131,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:0:T:2:N:0:O:2	.	2,40,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.18571428571428572	.	A:13:C:0:G:57:T:0:N:0:O:0	.	13,22,0,48	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,80,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,44,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:1:C:2:G:93:T:0:N:0:O:0	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.08450704225352113	.	A:6:C:0:G:64:T:0:N:0:O:1	.	6,27,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:98:G:0:T:3:N:0:O:0	.	0,74,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,37,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:2:G:0:T:0:N:0:O:2	.	2,47,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:65:T:0:N:0:O:0	.	1,18,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:108:T:0:N:0:O:2	.	3,40,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,40,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	27914	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:106:C:0:G:3:T:0:N:0:O:2	.	3,45,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	28291	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:1:T:2:N:0:O:0	.	0,51,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:61:G:0:T:2:N:0:O:6	.	0,30,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	28487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:111:T:0:N:0:O:1	.	1,88,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:3:C:0:G:69:T:0:N:0:O:0	.	3,41,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,7,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	0,28,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	29021	T	C	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:3:G:0:T:137:N:0:O:7	.	0,100,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:0:C:131:G:0:T:5:N:0:O:2	.	0,100,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:0:G:64:T:0:N:0:O:4	.	3,8,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,59,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:96:G:0:T:1:N:0:O:2	.	2,54,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29124	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,27,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:4:G:0:T:99:N:0:O:0	.	0,64,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	0,7,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:98:T:0:N:0:O:3	.	1,22,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:99:C:0:G:4:T:0:N:0:O:5	.	4,32,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:0:G:98:T:0:N:0:O:19	.	4,40,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00080	artic-pipeline	NB02	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	301	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	141	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00080	artic-pipeline	NB02	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	141	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:0:T:1:N:0:O:0	.	0,9,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	80	A	T	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:0:T:1:N:0:O:0	.	0,9,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	158	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:20:C:0:G:1:T:0:N:0:O:3	.	1,3,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	173	C	G	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:24:G:1:T:0:N:0:O:2	.	0,8,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	190	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:26:G:0:T:1:N:0:O:0	.	0,6,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	23	.	20	.	0.9130434782608695	.	A:0:C:0:G:0:T:21:N:0:O:2	.	5,7,16,16	69.237	1493.8	.	depth near threshold	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	278	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	0,7,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	280	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:23:G:0:T:1:N:0:O:1	.	0,6,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	303	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:20:C:1:G:0:T:0:N:0:O:1	.	1,3,0,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	773	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:108:C:0:G:3:T:0:N:0:O:2	.	3,44,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	794	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:0:C:81:G:0:T:4:N:0:O:1	.	0,48,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	802	A	G	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:120:C:0:G:3:T:0:N:0:O:25	.	0,68,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:84:T:0:N:0:O:2	.	0,30,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	833	T	C	C	17	accept high frequency variant	Pass	False	True	True	87	.	20	.	0.9770114942528736	.	A:0:C:85:G:0:T:2:N:0:O:0	.	42,42,43,45	279.237	857.4	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:55:T:0:N:0:O:2	.	2,14,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	1.0	.	A:0:C:0:G:0:T:132:N:0:O:0	.	89,89,43,43	210.0	1514.2	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	1197	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,70,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:89:G:0:T:4:N:0:O:2	.	0,42,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:2:T:0:N:0:O:3	.	2,24,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.016260162601626018	.	A:2:C:94:G:0:T:1:N:0:O:26	.	1,62,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:89:T:0:N:0:O:2	.	0,42,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,47,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	2023	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:109:G:0:T:3:N:0:O:0	.	1,48,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,43,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:72:G:0:T:2:N:0:O:2	.	0,53,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.07368421052631578	.	A:7:C:0:G:87:T:0:N:0:O:1	.	7,24,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:144:C:4:G:0:T:1:N:0:O:0	.	4,88,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:117:G:0:T:3:N:0:O:2	.	0,115,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:2:G:0:T:0:N:0:O:1	.	1,25,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	110	.	20	.	0.6	.	A:0:C:0:G:0:T:66:N:0:O:44	.	30,74,36,36	395.562	1350.1	.	.	.	.	mixed position	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:72:T:2:N:0:O:16	.	0,58,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:95:C:0:G:2:T:0:N:0:O:4	.	2,19,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:92:C:0:G:3:T:0:N:0:O:7	.	3,46,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:2:C:0:G:53:T:0:N:0:O:2	.	2,19,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:72:G:0:T:2:N:0:O:1	.	0,60,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:0:G:2:T:80:N:0:O:0	.	0,40,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3656	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:78:G:0:T:2:N:0:O:1	.	0,52,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:85:N:0:O:15	.	0,59,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:80:T:0:N:0:O:1	.	0,56,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:4:C:0:G:0:T:119:N:0:O:7	.	4,75,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,70,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.029556650246305417	.	A:6:C:0:G:186:T:0:N:0:O:11	.	6,67,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,38,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,37,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.026490066225165563	.	A:0:C:0:G:134:T:4:N:0:O:13	.	0,133,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	4783	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:110:C:3:G:0:T:0:N:0:O:2	.	3,62,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,70,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:0:G:3:T:117:N:0:O:8	.	0,81,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:70:C:2:G:0:T:0:N:0:O:0	.	0,44,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:89:N:0:O:1	.	0,75,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	3,53,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:96:T:0:N:0:O:2	.	1,61,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.1	.	A:0:C:53:G:1:T:6:N:0:O:0	.	0,44,6,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:3:G:0:T:95:N:0:O:0	.	0,52,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:85:C:0:G:2:T:0:N:0:O:3	.	1,46,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.07954545454545454	.	A:0:C:81:G:0:T:7:N:0:O:0	.	0,64,7,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:134:G:0:T:3:N:0:O:2	.	0,105,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.029411764705882353	.	A:165:C:0:G:5:T:0:N:0:O:0	.	5,74,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6565	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,24,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6630	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:45:N:0:O:1	.	1,19,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:68:C:0:G:2:T:0:N:0:O:4	.	2,26,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.05263157894736842	.	A:0:C:35:G:0:T:2:N:0:O:1	.	2,16,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:0:G:2:T:41:N:0:O:0	.	0,24,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:39:T:0:N:0:O:0	.	1,14,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.08695652173913043	.	A:79:C:0:G:8:T:1:N:0:O:4	.	8,36,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:79:G:0:T:3:N:0:O:4	.	1,54,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,61,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6829	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:0:G:2:T:92:N:0:O:2	.	0,45,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6830	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:88:C:0:G:0:T:2:N:0:O:3	.	0,50,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:65:T:0:N:0:O:3	.	2,32,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.06818181818181818	.	A:3:C:0:G:40:T:1:N:0:O:0	.	3,15,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:2:G:0:T:51:N:0:O:1	.	1,32,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6912	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:58:C:0:G:2:T:0:N:0:O:0	.	1,33,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:0:G:74:T:3:N:0:O:0	.	2,46,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:0:G:1:T:39:N:0:O:0	.	1,18,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.06666666666666667	.	A:55:C:0:G:0:T:4:N:0:O:1	.	0,42,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7155	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:93:G:0:T:2:N:0:O:5	.	0,68,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,32,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7423	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:86:G:0:T:2:N:0:O:7	.	0,61,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	7565	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	1,40,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:58:G:0:T:3:N:0:O:21	.	0,66,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:78:N:0:O:5	.	0,44,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:99:C:3:G:0:T:0:N:0:O:1	.	3,35,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	2,25,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7938	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	0,55,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	7939	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:90:N:0:O:2	.	0,53,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:0:G:131:T:3:N:0:O:5	.	3,65,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:88:N:0:O:0	.	0,52,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:4:G:0:T:98:N:0:O:0	.	0,55,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	8900	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	1,47,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:0:T:91:N:0:O:2	.	3,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:97:G:0:T:2:N:0:O:4	.	0,61,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	9336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:2:C:0:G:0:T:97:N:0:O:8	.	2,69,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9584	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:88:T:0:N:0:O:2	.	2,43,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:66:G:0:T:2:N:0:O:0	.	0,41,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9794	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.017241379310344827	.	A:2:C:0:G:92:T:0:N:0:O:22	.	1,46,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9809	A	T	A	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:176:C:1:G:0:T:4:N:0:O:2	.	4,39,0,144	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9810	C	G	C	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:0:C:192:G:4:T:0:N:0:O:1	.	4,67,0,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:77:N:0:O:3	.	0,48,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	2,13,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:90:G:0:T:2:N:0:O:6	.	2,21,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:72:N:0:O:5	.	0,54,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:87:C:0:G:3:T:0:N:0:O:0	.	3,35,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.023391812865497075	.	A:0:C:4:G:0:T:165:N:0:O:2	.	0,104,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:0:T:85:N:0:O:0	.	0,46,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	1,30,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10266	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:99:T:3:N:0:O:1	.	3,47,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:0:C:84:G:0:T:6:N:0:O:0	.	0,53,6,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:1:G:96:T:2:N:0:O:0	.	2,49,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.03	.	A:0:C:6:G:0:T:194:N:0:O:0	.	1,120,5,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:108:N:0:O:4	.	0,59,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	11054	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,49,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	11191	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:0:G:5:T:87:N:0:O:2	.	2,70,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:59:C:0:G:0:T:2:N:0:O:0	.	2,26,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:0:C:78:G:0:T:7:N:0:O:0	.	0,60,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:78:C:0:G:0:T:3:N:0:O:0	.	3,41,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:70:C:0:G:2:T:0:N:0:O:0	.	0,46,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:79:G:0:T:5:N:0:O:20	.	0,79,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	12170	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:4:C:0:G:191:T:0:N:0:O:1	.	1,64,3,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:94:T:0:N:0:O:1	.	4,26,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.08536585365853659	.	A:0:C:75:G:0:T:7:N:0:O:0	.	0,53,7,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:97:C:0:G:2:T:0:N:0:O:6	.	2,51,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:0:T:104:N:0:O:8	.	3,57,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:102:T:0:N:0:O:1	.	2,37,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:78:G:0:T:3:N:0:O:0	.	0,48,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.07575757575757576	.	A:0:C:61:G:0:T:5:N:0:O:0	.	0,58,5,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:82:T:0:N:0:O:6	.	5,31,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:82:N:0:O:2	.	0,39,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:91:T:0:N:0:O:4	.	2,27,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:49:C:0:G:2:T:0:N:0:O:2	.	0,3,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:114:C:0:G:3:T:0:N:0:O:1	.	3,43,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	2,35,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	102	.	20	.	0.9901960784313726	.	A:0:C:0:G:0:T:101:N:0:O:1	.	50,51,51,51	409.694	1232.0	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:97:G:0:T:3:N:0:O:1	.	0,71,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,51,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,37,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	2,37,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	15318	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:109:T:0:N:0:O:4	.	3,51,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:117:T:3:N:0:O:0	.	0,64,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	15932	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:1:N:0:O:0	.	2,37,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:1:G:0:T:37:N:0:O:15	.	0,33,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.14285714285714285	.	A:0:C:36:G:0:T:6:N:0:O:0	.	0,21,6,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	16002	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:0:C:0:G:2:T:55:N:0:O:2	.	2,11,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:73:T:0:N:0:O:3	.	2,19,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	0,50,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:0:G:111:T:3:N:0:O:3	.	1,45,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:90:T:0:N:0:O:2	.	3,14,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:92:G:0:T:3:N:0:O:5	.	0,56,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16823	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:23:T:0:N:0:O:2	.	0,7,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.06329113924050633	.	A:0:C:0:G:5:T:73:N:0:O:1	.	0,22,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:3:C:0:G:108:T:0:N:0:O:37	.	0,31,3,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	0,2,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17131	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:3:G:0:T:88:N:0:O:1	.	0,45,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:80:G:0:T:2:N:0:O:6	.	0,51,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:66:G:0:T:2:N:0:O:3	.	0,51,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	2,11,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:1:G:0:T:85:N:0:O:2	.	4,15,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,24,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	0,52,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:105:N:0:O:18	.	0,51,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:108:C:0:G:0:T:4:N:0:O:3	.	0,55,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.02824858757062147	.	A:0:C:172:G:0:T:5:N:0:O:0	.	2,96,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.08256880733944955	.	A:9:C:0:G:100:T:0:N:0:O:0	.	0,59,9,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:95:T:0:N:0:O:0	.	4,37,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:91:C:0:G:2:T:0:N:0:O:3	.	2,27,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:4:C:0:G:73:T:0:N:0:O:0	.	4,22,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.03125	.	A:6:C:0:G:184:T:0:N:0:O:2	.	6,76,0,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18099	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:81:N:0:O:4	.	0,45,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,54,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:0:C:0:G:85:T:5:N:0:O:2	.	0,46,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:69:T:1:N:0:O:1	.	3,15,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:26:C:0:G:0:T:1:N:0:O:3	.	1,18,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	2,28,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	18880	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,30,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:121:T:0:N:0:O:0	.	3,17,0,107	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.017543859649122806	.	A:3:C:0:G:0:T:132:N:0:O:36	.	1,67,2,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:96:C:0:G:0:T:3:N:0:O:3	.	1,60,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	20714	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	2,32,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:194:C:0:G:4:T:0:N:0:O:2	.	4,56,0,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:88:C:0:G:3:T:0:N:0:O:0	.	3,15,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.12962962962962962	.	A:0:C:0:G:43:T:7:N:0:O:4	.	0,37,7,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.06779661016949153	.	A:0:C:52:G:0:T:4:N:0:O:3	.	0,35,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21209	T	A	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:0:T:43:N:0:O:4	.	0,26,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:43:T:0:N:0:O:0	.	1,12,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21409	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	1,78,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21433	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,43,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:82:T:0:N:0:O:4	.	2,19,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:0:C:89:G:0:T:5:N:0:O:4	.	3,27,2,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	21795	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:112:T:0:N:0:O:2	.	3,48,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:4:C:0:G:108:T:0:N:0:O:1	.	4,64,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.06363636363636363	.	A:0:C:0:G:7:T:101:N:0:O:2	.	7,34,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	22301	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:106:C:0:G:3:T:0:N:0:O:1	.	3,58,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.043478260869565216	.	A:0:C:0:G:153:T:7:N:0:O:1	.	0,104,7,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:129:T:0:N:0:O:2	.	3,25,0,109	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:78:N:0:O:20	.	0,43,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	22972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:2:G:0:T:66:N:0:O:0	.	0,29,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:87:N:0:O:9	.	0,44,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,57,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23393	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	2,57,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	126	.	20	.	0.9523809523809523	.	A:0:C:0:G:120:T:0:N:0:O:6	.	59,65,61,61	70.0	1515.5	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:74:T:0:N:0:O:5	.	2,16,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:87:C:0:G:3:T:0:N:0:O:1	.	3,43,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:1:N:0:O:0	.	2,16,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.10112359550561797	.	A:0:C:80:G:0:T:9:N:0:O:0	.	0,63,9,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:1:C:81:G:0:T:3:N:0:O:3	.	1,47,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.04895104895104895	.	A:136:C:0:G:0:T:7:N:0:O:0	.	7,64,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.07894736842105263	.	A:6:C:0:G:0:T:70:N:0:O:0	.	6,16,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,47,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:5:C:0:G:94:T:0:N:0:O:0	.	5,21,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:94:T:0:N:0:O:3	.	2,22,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:84:G:0:T:4:N:0:O:0	.	0,60,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24199	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,32,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:52:C:0:G:2:T:0:N:0:O:10	.	0,48,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:102:G:0:T:1:N:0:O:1	.	3,56,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:116:C:1:G:0:T:3:N:0:O:7	.	3,89,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:2:G:0:T:0:N:0:O:0	.	2,44,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:2:C:0:G:91:T:0:N:0:O:21	.	2,49,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:0:G:105:T:4:N:0:O:1	.	4,56,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	0,68,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:0:G:4:T:86:N:0:O:0	.	0,69,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	34	.	20	.	0.058823529411764705	.	A:0:C:2:G:0:T:32:N:0:O:0	.	2,26,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,2,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:69:T:0:N:0:O:0	.	2,17,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:1:C:0:G:103:T:3:N:0:O:19	.	3,62,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:0:C:0:G:0:T:115:N:0:O:0	.	45,45,70,70	210.0	1914.5	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:64:C:2:G:0:T:0:N:0:O:1	.	1,27,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:98:G:0:T:0:N:0:O:9	.	3,55,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.016	.	A:2:C:82:G:0:T:0:N:0:O:41	.	2,55,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.05660377358490566	.	A:49:C:3:G:0:T:0:N:0:O:1	.	0,33,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:74:C:0:G:1:T:3:N:0:O:6	.	0,66,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:69:C:0:G:2:T:0:N:0:O:1	.	2,26,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:92:G:0:T:2:N:0:O:3	.	2,61,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:2:T:0:N:0:O:1	.	2,40,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:91:N:0:O:0	.	1,54,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,58,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,44,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:95:T:0:N:0:O:1	.	3,31,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:0:C:166:G:0:T:4:N:0:O:2	.	0,137,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.02843601895734597	.	A:0:C:6:G:0:T:205:N:0:O:0	.	0,145,6,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:4:C:0:G:70:T:0:N:0:O:1	.	4,8,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,65,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26910	A	T	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:58:C:0:G:0:T:2:N:0:O:6	.	2,22,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,34,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:97:C:0:G:2:T:0:N:0:O:10	.	2,55,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:2:C:0:G:66:T:0:N:0:O:0	.	2,18,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:0:C:77:G:0:T:7:N:0:O:0	.	0,67,7,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27317	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	1,36,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:119:G:0:T:3:N:0:O:1	.	0,71,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	27684	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	0,56,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:85:G:0:T:0:N:0:O:2	.	3,46,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:113:C:1:G:0:T:3:N:0:O:34	.	3,92,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	2,42,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:62:C:0:G:2:T:0:N:0:O:0	.	2,8,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	27964	C	T	T	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	1.0	.	A:0:C:0:G:0:T:127:N:0:O:0	.	67,67,60,60	420.0	1697.4	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	28219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:1:C:0:G:2:T:64:N:0:O:0	.	1,31,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:89:C:0:G:2:T:0:N:0:O:7	.	2,26,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	28410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:58:G:0:T:2:N:0:O:0	.	1,22,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,21,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:83:G:0:T:2:N:0:O:6	.	0,39,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:71:G:0:T:2:N:0:O:3	.	1,35,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:1:G:0:T:0:N:0:O:0	.	1,8,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:70:T:0:N:0:O:2	.	2,10,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:33:C:0:G:1:T:0:N:0:O:1	.	0,0,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:84:C:0:G:2:T:0:N:0:O:2	.	2,17,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:85:T:0:N:0:O:12	.	3,27,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	29703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,66,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	29704	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:126:C:0:G:4:T:0:N:0:O:3	.	3,71,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00082	artic-pipeline	NB04	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	299	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00082	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	143	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:1:C:0:G:0:T:44:N:0:O:8	.	0,5,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:0:T:1:N:0:O:0	.	0,5,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	89	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:41:N:0:O:1	.	0,2,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.05714285714285714	.	A:0:C:33:G:0:T:2:N:0:O:0	.	0,2,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	142	A	T	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:0:T:1:N:0:O:0	.	0,1,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	190	C	G	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:40:G:1:T:0:N:0:O:0	.	0,2,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	233	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:45:G:0:T:1:N:0:O:1	.	0,5,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	52	.	20	.	0.9615384615384616	.	A:0:C:1:G:0:T:50:N:0:O:1	.	4,5,46,47	346.227	1362.0	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	336	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	0,2,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.048	.	A:118:C:0:G:6:T:0:N:0:O:1	.	6,37,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:2:C:0:G:59:T:0:N:0:O:2	.	1,16,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1010	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:3:G:0:T:116:N:0:O:2	.	0,84,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	139	.	20	.	0.9856115107913669	.	A:0:C:1:G:0:T:137:N:0:O:1	.	89,90,48,49	210.0	1600.9	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:124:G:0:T:0:N:0:O:2	.	3,77,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:117:C:0:G:0:T:3:N:0:O:17	.	3,95,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:81:G:0:T:3:N:0:O:0	.	3,60,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1094	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:0:T:89:N:0:O:1	.	2,62,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:58:T:0:N:0:O:22	.	0,18,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:76:C:0:G:3:T:0:N:0:O:0	.	1,47,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:85:N:0:O:0	.	3,36,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1189	A	C	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:96:C:2:G:0:T:0:N:0:O:4	.	2,55,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1222	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:105:N:0:O:0	.	0,88,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:68:T:0:N:0:O:0	.	2,23,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1288	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.030612244897959183	.	A:0:C:184:G:0:T:6:N:0:O:6	.	0,129,6,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:95:G:0:T:3:N:0:O:0	.	0,48,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:1:T:113:N:0:O:0	.	0,53,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:92:G:0:T:0:N:0:O:31	.	1,59,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:92:T:0:N:0:O:3	.	1,40,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:1:C:0:G:82:T:3:N:0:O:1	.	0,47,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:99:N:0:O:3	.	0,42,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:66:C:0:G:4:T:0:N:0:O:2	.	0,4,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:122:T:0:N:0:O:19	.	0,57,3,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	2107	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:0:C:4:G:0:T:144:N:0:O:1	.	0,80,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.11818181818181818	.	A:13:C:0:G:96:T:0:N:0:O:1	.	13,35,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:138:C:3:G:0:T:0:N:0:O:1	.	3,74,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,78,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	2903	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:111:C:3:G:0:T:1:N:0:O:0	.	3,48,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	2933	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,54,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	120	.	20	.	0.7333333333333333	.	A:0:C:0:G:0:T:88:N:0:O:32	.	44,76,44,44	58.097	1442.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:0:G:69:T:4:N:0:O:18	.	0,72,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	3208	T	G	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:0:G:3:T:125:N:0:O:1	.	0,65,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3209	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:114:T:0:N:0:O:0	.	3,47,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3263	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,37,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:1:N:0:O:0	.	0,58,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:66:G:0:T:2:N:0:O:2	.	0,32,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	3414	A	C	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:1:G:0:T:0:N:0:O:1	.	1,17,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:1:T:0:N:0:O:0	.	1,3,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3829	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:2:G:0:T:0:N:0:O:0	.	2,51,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:4:C:0:G:82:T:0:N:0:O:0	.	0,55,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,29,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	4207	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:83:T:0:N:0:O:2	.	0,12,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:0:G:179:T:5:N:0:O:11	.	0,158,5,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.035398230088495575	.	A:0:C:198:G:0:T:8:N:0:O:20	.	0,149,8,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5136	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:0:T:2:N:0:O:0	.	2,46,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:66:C:0:G:0:T:2:N:0:O:0	.	2,19,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5148	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:107:T:0:N:0:O:1	.	2,67,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,62,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.07575757575757576	.	A:0:C:61:G:0:T:5:N:0:O:0	.	0,58,5,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:1:C:4:G:0:T:66:N:0:O:0	.	0,52,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5813	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:89:T:0:N:0:O:4	.	2,25,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:74:T:0:N:0:O:2	.	3,12,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	2,35,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:103:G:0:T:3:N:0:O:2	.	0,64,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.09375	.	A:0:C:86:G:0:T:9:N:0:O:1	.	0,71,9,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:108:G:0:T:5:N:0:O:0	.	4,63,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	6308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:92:C:0:G:3:T:0:N:0:O:2	.	3,35,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6309	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:2:C:0:G:96:T:0:N:0:O:8	.	2,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6534	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:1:T:28:N:0:O:0	.	1,23,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6536	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:20:T:1:N:0:O:0	.	1,14,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6575	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:1:T:0:N:0:O:0	.	0,15,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6576	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6591	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	0,15,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6603	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	1,23,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6622	G	T	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:0:G:35:T:1:N:0:O:4	.	0,17,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6635	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:0:T:1:N:0:O:1	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:36:C:0:G:1:T:0:N:0:O:1	.	1,17,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	6650	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	1,20,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6652	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,21,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6674	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,18,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.09090909090909091	.	A:0:C:3:G:0:T:28:N:0:O:2	.	0,17,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6683	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,17,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6685	T	A	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:0:T:37:N:0:O:0	.	1,16,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6688	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:36:N:0:O:0	.	1,16,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6694	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:21:T:1:N:0:O:0	.	0,9,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	1,20,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6722	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,12,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6729	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,21,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6740	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.05714285714285714	.	A:0:C:32:G:0:T:2:N:0:O:1	.	0,13,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6745	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,20,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.07142857142857142	.	A:48:C:0:G:4:T:0:N:0:O:4	.	4,22,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:0:C:48:G:0:T:2:N:0:O:0	.	0,35,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6830	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:48:C:1:G:0:T:0:N:0:O:1	.	1,30,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6831	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:49:T:0:N:0:O:1	.	1,17,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6860	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	1,14,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6862	A	C	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:1:G:0:T:0:N:0:O:0	.	1,19,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6884	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	1,9,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6984	T	A	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:0:T:31:N:0:O:0	.	1,22,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6987	G	T	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:0:G:37:T:1:N:0:O:0	.	1,23,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	6996	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	0,14,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7031	A	C	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:1:G:0:T:0:N:0:O:0	.	0,15,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:0:T:1:N:0:O:0	.	0,18,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7048	T	A	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:0:T:27:N:0:O:0	.	1,20,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7050	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,17,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:83:G:0:T:3:N:0:O:1	.	0,47,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7392	C	G	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:60:G:3:T:1:N:0:O:2	.	0,48,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,45,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.10666666666666667	.	A:8:C:0:G:66:T:0:N:0:O:1	.	8,19,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	7514	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:2:T:0:N:0:O:1	.	2,39,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:2:C:0:G:65:T:0:N:0:O:1	.	2,19,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7780	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:81:N:0:O:4	.	0,25,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	7999	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:3:G:0:T:127:N:0:O:1	.	1,53,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:5:G:0:T:89:N:0:O:0	.	0,47,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:2:C:0:G:58:T:0:N:0:O:1	.	2,2,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.05	.	A:0:C:108:G:0:T:6:N:0:O:6	.	0,92,6,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:122:G:0:T:3:N:0:O:1	.	0,101,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:1:C:4:G:0:T:128:N:0:O:5	.	0,99,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	9561	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	0,52,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:53:G:0:T:2:N:0:O:22	.	2,69,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	9629	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.05714285714285714	.	A:0:C:2:G:0:T:33:N:0:O:0	.	2,30,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	9693	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,44,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	9794	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:2:C:0:G:86:T:1:N:0:O:22	.	0,44,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:71:T:1:N:0:O:0	.	4,26,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	10315	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:0:T:96:N:0:O:3	.	2,55,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	10464	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:70:C:0:G:3:T:0:N:0:O:0	.	2,29,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	10486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:89:C:0:G:2:T:0:N:0:O:5	.	1,38,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:0:C:95:G:0:T:6:N:0:O:0	.	0,65,6,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.06481481481481481	.	A:0:C:0:G:7:T:99:N:0:O:2	.	0,63,7,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:91:G:0:T:0:N:0:O:7	.	3,42,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11053	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,45,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11054	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,44,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11076	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:2:G:0:T:68:N:0:O:0	.	2,67,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11083	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	31	.	20	.	0.5483870967741935	.	A:0:C:0:G:0:T:17:N:0:O:14	.	5,19,12,12	23.53	658.0	.	.	.	mismatch(n+m)	mixed position	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	11442	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:92:G:0:T:2:N:0:O:4	.	1,69,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:103:C:0:G:0:T:3:N:0:O:2	.	3,55,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11515	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:121:N:0:O:1	.	0,76,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11657	T	G	T	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.027777777777777776	.	A:0:C:0:G:5:T:175:N:0:O:0	.	5,108,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11658	G	T	G	16	ignore low frequency variant	Pass	False	False	True	250	.	20	.	0.02	.	A:0:C:0:G:238:T:5:N:0:O:7	.	5,142,0,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,51,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11673	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:0:T:2:N:0:O:0	.	2,44,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11721	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:91:C:0:G:2:T:0:N:0:O:7	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11821	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:76:N:0:O:1	.	0,44,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:71:C:0:G:4:T:0:N:0:O:1	.	1,66,3,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.015748031496062992	.	A:0:C:98:G:0:T:2:N:0:O:27	.	0,114,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:0:G:110:T:0:N:0:O:4	.	4,30,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12333	C	G	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.01948051948051948	.	A:0:C:124:G:3:T:0:N:0:O:27	.	2,83,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:101:C:4:G:0:T:0:N:0:O:1	.	3,49,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:85:C:0:G:3:T:0:N:0:O:0	.	0,39,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12554	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:103:T:0:N:0:O:4	.	1,32,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:1:T:2:N:0:O:0	.	1,21,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.11940298507462686	.	A:0:C:58:G:0:T:8:N:0:O:1	.	0,36,8,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.03125	.	A:7:C:1:G:216:T:0:N:0:O:0	.	7,68,0,156	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	0,26,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:95:T:0:N:0:O:3	.	2,19,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:112:C:0:G:4:T:0:N:0:O:3	.	4,39,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,47,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:76:G:0:T:4:N:0:O:0	.	0,55,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:84:T:0:N:0:O:2	.	3,24,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13471	G	T	G	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.019704433497536946	.	A:0:C:0:G:193:T:4:N:0:O:6	.	1,109,3,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.05217391304347826	.	A:0:C:107:G:0:T:6:N:0:O:2	.	0,102,6,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:110:T:0:N:0:O:13	.	3,33,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:1:C:102:G:1:T:3:N:0:O:1	.	0,66,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:0:C:0:G:4:T:152:N:0:O:2	.	0,82,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.016666666666666666	.	A:3:C:0:G:1:T:142:N:0:O:34	.	2,87,1,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13593	T	C	T	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.0375	.	A:0:C:6:G:0:T:153:N:0:O:1	.	0,92,6,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13620	C	T	T	17	accept high frequency variant	Pass	False	True	True	190	.	20	.	1.0	.	A:0:C:0:G:0:T:190:N:0:O:0	.	91,91,99,99	280.0	1686.3	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	13680	C	A	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:29:G:0:T:0:N:0:O:1	.	0,10,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:23:T:0:N:0:O:1	.	1,4,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13740	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:30:G:0:T:1:N:0:O:1	.	0,8,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	13747	A	T	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:21:C:0:G:0:T:1:N:0:O:1	.	0,10,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:22:C:0:G:0:T:1:N:0:O:1	.	0,11,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13785	A	C	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:30:C:1:G:0:T:0:N:0:O:1	.	1,8,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13788	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	1,8,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13828	G	T	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:24:T:1:N:0:O:2	.	1,5,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	0,9,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13921	G	C	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:27:T:0:N:0:O:1	.	0,12,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	13928	A	C	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:1:G:0:T:0:N:0:O:0	.	0,10,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:111:T:0:N:0:O:1	.	3,49,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:120:C:0:G:3:T:0:N:0:O:8	.	3,57,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	92	.	20	.	0.967391304347826	.	A:0:C:1:G:0:T:89:N:0:O:2	.	52,55,37,37	400.149	1301.7	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:1:N:0:O:1	.	2,21,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:80:G:0:T:2:N:0:O:6	.	0,65,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:83:G:0:T:1:N:0:O:0	.	2,40,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	1,60,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:0:C:4:G:0:T:68:N:0:O:2	.	0,66,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	15422	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:81:C:1:G:0:T:2:N:0:O:1	.	0,49,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	0,51,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,71,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	15673	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:0:G:4:T:118:N:0:O:1	.	4,77,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.09803921568627451	.	A:0:C:44:G:0:T:5:N:0:O:2	.	1,31,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:102:T:4:N:0:O:0	.	4,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16635	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:0:G:2:T:69:N:0:O:2	.	0,21,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:97:T:0:N:0:O:2	.	3,22,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:89:G:0:T:3:N:0:O:4	.	0,58,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,36,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:0:G:5:T:94:N:0:O:2	.	0,42,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.024390243902439025	.	A:4:C:0:G:120:T:1:N:0:O:39	.	0,58,4,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16884	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:89:N:0:O:4	.	1,29,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,37,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:71:T:0:N:0:O:1	.	3,6,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,5,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:77:C:0:G:3:T:0:N:0:O:2	.	3,10,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:0:T:74:N:0:O:0	.	4,11,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:78:G:0:T:2:N:0:O:1	.	0,60,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	17563	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:140:G:0:T:3:N:0:O:0	.	2,64,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:105:G:0:T:4:N:0:O:0	.	0,55,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.058823529411764705	.	A:0:C:95:G:0:T:6:N:0:O:1	.	0,49,6,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:0:C:69:G:0:T:5:N:0:O:0	.	0,44,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:89:C:0:G:0:T:5:N:0:O:4	.	0,44,5,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.08403361344537816	.	A:10:C:0:G:109:T:0:N:0:O:0	.	0,66,10,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	18266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	0,59,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:110:G:0:T:4:N:0:O:1	.	0,68,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	18484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:121:G:0:T:3:N:0:O:0	.	0,71,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	18680	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:84:G:0:T:0:N:0:O:2	.	0,39,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.06666666666666667	.	A:27:C:0:G:0:T:2:N:0:O:1	.	0,17,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:0:C:0:G:4:T:61:N:0:O:0	.	4,25,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	19101	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:133:T:0:N:0:O:2	.	3,54,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	3,19,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:4:C:0:G:0:T:120:N:0:O:38	.	0,44,4,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:85:C:0:G:0:T:4:N:0:O:1	.	0,39,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	19759	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:81:C:3:G:0:T:0:N:0:O:0	.	2,36,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:0:G:2:T:69:N:0:O:0	.	0,26,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20406	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,40,1,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,70,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:132:G:0:T:0:N:0:O:0	.	0,91,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20679	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:1:C:0:G:97:T:2:N:0:O:2	.	0,53,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:129:C:0:G:3:T:0:N:0:O:0	.	3,70,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,39,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:91:G:0:T:2:N:0:O:16	.	2,53,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.03482587064676617	.	A:192:C:0:G:7:T:0:N:0:O:2	.	7,65,0,136	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	2,19,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.06315789473684211	.	A:0:C:89:G:0:T:6:N:0:O:0	.	0,42,6,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:0:G:2:T:66:N:0:O:0	.	1,10,1,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.07058823529411765	.	A:0:C:0:G:72:T:6:N:0:O:7	.	0,61,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21218	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:73:N:0:O:8	.	0,54,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:0:C:1:G:0:T:35:N:0:O:26	.	0,47,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:79:C:0:G:0:T:2:N:0:O:1	.	0,35,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:3:C:0:G:66:T:0:N:0:O:1	.	3,13,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:91:N:0:O:0	.	2,44,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:110:G:0:T:4:N:0:O:4	.	3,26,1,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:102:G:0:T:4:N:0:O:12	.	0,83,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:4:G:0:T:102:N:0:O:1	.	0,80,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:4:C:0:G:132:T:0:N:0:O:13	.	4,58,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.045454545454545456	.	A:0:C:0:G:6:T:126:N:0:O:0	.	6,50,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:0:C:0:G:4:T:124:N:0:O:21	.	0,95,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	22988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,50,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	23224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:112:T:0:N:0:O:1	.	3,63,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	0.8951612903225806	.	A:1:C:0:G:111:T:0:N:0:O:12	.	61,74,50,50	210.0	1537.5	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:77:T:0:N:0:O:8	.	3,40,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,62,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:83:C:0:G:2:T:0:N:0:O:1	.	2,47,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	0,80,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.09482758620689655	.	A:0:C:105:G:0:T:11:N:0:O:0	.	0,93,11,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:0:T:90:N:0:O:0	.	3,46,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.07954545454545454	.	A:0:C:79:G:0:T:7:N:0:O:2	.	0,73,7,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.046153846153846156	.	A:0:C:49:G:0:T:3:N:0:O:13	.	0,58,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,13,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:108:G:0:T:0:N:0:O:4	.	4,53,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.026143790849673203	.	A:143:C:1:G:0:T:4:N:0:O:5	.	4,100,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:98:C:4:G:0:T:0:N:0:O:2	.	4,53,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:118:G:0:T:4:N:0:O:2	.	0,73,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,36,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:1:C:0:G:2:T:84:N:0:O:0	.	0,60,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	1,28,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	0,1,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	0,20,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25285	T	A	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:0:T:107:N:0:O:0	.	0,57,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	0,55,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	111	.	20	.	1.0	.	A:0:C:0:G:0:T:111:N:0:O:0	.	48,48,63,63	280.0	1882.1	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:2:C:97:G:0:T:0:N:0:O:8	.	2,55,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25657	A	C	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:120:C:3:G:0:T:0:N:0:O:0	.	0,75,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25696	G	C	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:97:T:0:N:0:O:0	.	2,43,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25775	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:113:T:0:N:0:O:0	.	2,58,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.017241379310344827	.	A:2:C:75:G:0:T:0:N:0:O:39	.	2,32,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.1509433962264151	.	A:44:C:8:G:0:T:0:N:0:O:1	.	3,29,5,24	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:0:G:0:T:2:N:0:O:1	.	0,58,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:76:N:0:O:0	.	0,53,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:0:T:96:N:0:O:1	.	3,46,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25870	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	2,67,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:66:C:0:G:3:T:0:N:0:O:1	.	3,20,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	1,52,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:2:T:0:N:0:O:1	.	2,35,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26065	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:118:T:0:N:0:O:0	.	3,70,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:4:C:0:G:151:T:0:N:0:O:2	.	4,43,0,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:85:G:0:T:3:N:0:O:21	.	0,96,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:95:G:0:T:3:N:0:O:0	.	0,63,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:4:C:0:G:76:T:0:N:0:O:1	.	4,25,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.05555555555555555	.	A:0:C:153:G:0:T:9:N:0:O:0	.	0,128,9,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.03317535545023697	.	A:0:C:7:G:0:T:204:N:0:O:0	.	0,140,7,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:87:G:0:T:2:N:0:O:4	.	1,28,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:2:G:0:T:57:N:0:O:1	.	1,20,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:0:T:2:N:0:O:0	.	2,20,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:5:C:0:G:73:T:0:N:0:O:0	.	5,9,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:96:G:0:T:4:N:0:O:0	.	0,61,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:1:G:84:T:0:N:0:O:0	.	2,34,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:78:G:0:T:3:N:0:O:0	.	0,62,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:77:G:1:T:1:N:0:O:2	.	3,48,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:111:C:0:G:0:T:4:N:0:O:29	.	3,93,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:69:T:0:N:0:O:4	.	2,12,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	27779	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	1,61,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:109:T:0:N:0:O:1	.	4,25,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:114:C:0:G:4:T:0:N:0:O:0	.	4,24,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:0:T:67:N:0:O:2	.	0,24,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	28232	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,52,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:57:G:0:T:3:N:0:O:2	.	0,23,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:0:G:100:T:0:N:0:O:1	.	5,8,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:5:C:0:G:73:T:0:N:0:O:2	.	5,9,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	29200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:74:G:0:T:2:N:0:O:0	.	2,38,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	29378	A	T	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:68:C:0:G:0:T:2:N:0:O:0	.	2,37,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	1,5,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	29564	T	C	T	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.021645021645021644	.	A:0:C:5:G:0:T:226:N:0:O:0	.	1,155,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	29701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:77:T:0:N:0:O:3	.	2,66,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:4:G:73:T:0:N:0:O:3	.	4,35,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:59:G:2:T:0:N:0:O:2	.	2,30,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00083	artic-pipeline	NB05	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	299	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00083	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	57	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,10,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:0:T:1:N:0:O:0	.	0,6,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,6,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,6,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	117	C	A	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:37:G:0:T:0:N:0:O:1	.	0,8,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	118	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:0:G:0:T:1:N:0:O:1	.	0,5,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:1:T:0:N:0:O:0	.	1,3,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	137	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	1,4,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,7,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	154	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:33:N:0:O:2	.	0,7,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	155	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:40:T:0:N:0:O:1	.	0,9,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	157	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:36:G:0:T:1:N:0:O:2	.	0,10,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	180	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.13636363636363635	.	A:0:C:18:G:0:T:3:N:0:O:1	.	0,6,3,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	211	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,5,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	217	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:0:T:1:N:0:O:0	.	0,3,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	224	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:1:T:28:N:0:O:0	.	0,1,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	238	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,6,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	34	.	20	.	1.0	.	A:0:C:0:G:0:T:34:N:0:O:0	.	5,5,29,29	279.237	1282.9	.	.	.	.	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	276	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	1,8,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	277	T	A	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:0:T:32:N:0:O:0	.	1,8,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	282	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:27:G:0:T:1:N:0:O:2	.	0,4,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	283	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:1:T:27:N:0:O:1	.	0,6,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:0:T:32:N:0:O:0	.	1,2,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:30:G:0:T:1:N:0:O:1	.	1,3,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	310	A	T	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:0:T:1:N:0:O:0	.	0,6,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	324	T	G	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:1:T:32:N:0:O:0	.	0,4,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,5,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,55,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:1:T:65:N:0:O:5	.	2,19,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	794	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,41,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.07692307692307693	.	A:0:C:83:G:1:T:7:N:0:O:0	.	0,48,7,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:0:C:78:G:0:T:6:N:0:O:0	.	0,45,6,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,53,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1020	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,65,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,9,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:52:T:0:N:0:O:18	.	2,14,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1280	G	A	G	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.030456852791878174	.	A:6:C:0:G:181:T:0:N:0:O:10	.	6,109,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:0:T:97:N:0:O:2	.	0,35,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:90:G:0:T:5:N:0:O:0	.	0,42,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1497	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,52,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,51,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.046153846153846156	.	A:61:C:0:G:3:T:0:N:0:O:1	.	1,5,2,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,29,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:0:G:114:T:0:N:0:O:16	.	2,57,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,47,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:90:T:0:N:0:O:1	.	5,18,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	2235	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:0:G:116:T:4:N:0:O:1	.	0,54,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	2284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:86:T:0:N:0:O:2	.	2,28,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:2:C:0:G:53:T:0:N:0:O:0	.	0,18,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:129:T:0:N:0:O:0	.	3,79,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	20	.	0.7049180327868853	.	A:0:C:0:G:0:T:86:N:0:O:36	.	44,80,42,42	56.015	1537.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:64:T:2:N:0:O:22	.	0,65,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	3297	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:96:C:4:G:0:T:0:N:0:O:3	.	2,42,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:78:G:0:T:2:N:0:O:2	.	0,43,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	3543	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,76,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:72:N:0:O:15	.	0,43,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:0:G:84:T:3:N:0:O:8	.	2,47,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:73:T:0:N:0:O:1	.	0,39,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:2:G:0:T:0:N:0:O:0	.	2,23,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:39:G:0:T:2:N:0:O:4	.	0,30,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:0:T:87:N:0:O:22	.	0,47,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.04	.	A:0:C:0:G:160:T:7:N:0:O:8	.	0,129,7,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:0:C:0:G:141:T:4:N:0:O:35	.	0,152,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4831	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:124:C:0:G:3:T:0:N:0:O:2	.	3,86,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4856	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:91:T:0:N:0:O:6	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:0:G:3:T:128:N:0:O:1	.	0,96,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:73:T:0:N:0:O:7	.	2,45,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	4984	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.02403846153846154	.	A:203:C:0:G:5:T:0:N:0:O:0	.	5,114,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5163	A	T	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:0:T:2:N:0:O:1	.	1,34,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5260	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:71:N:0:O:10	.	0,63,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,50,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:103:T:0:N:0:O:2	.	3,45,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:114:T:0:N:0:O:0	.	0,62,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:1:G:116:T:0:N:0:O:1	.	0,65,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:71:G:0:T:3:N:0:O:0	.	0,66,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5783	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:72:C:0:G:0:T:2:N:0:O:13	.	2,49,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:0:T:83:N:0:O:3	.	0,67,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.12631578947368421	.	A:0:C:81:G:0:T:12:N:0:O:2	.	0,66,12,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.022598870056497175	.	A:1:C:164:G:0:T:4:N:0:O:8	.	0,112,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:0:C:196:G:0:T:4:N:0:O:0	.	0,108,4,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:32:C:0:G:1:T:0:N:0:O:1	.	1,12,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:30:G:0:T:1:N:0:O:2	.	0,21,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	0,28,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:1:C:50:G:0:T:2:N:0:O:0	.	0,27,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6667	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,23,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:0:G:2:T:47:N:0:O:3	.	0,27,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6702	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:0:T:43:N:0:O:3	.	1,33,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.06140350877192982	.	A:103:C:0:G:7:T:0:N:0:O:4	.	7,39,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,53,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:122:C:0:G:3:T:0:N:0:O:1	.	3,35,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:84:T:2:N:0:O:2	.	1,34,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	6990	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:51:G:0:T:2:N:0:O:1	.	1,32,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.14285714285714285	.	A:36:C:0:G:0:T:6:N:0:O:0	.	0,25,6,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:85:N:0:O:0	.	1,27,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	2,32,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	7728	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:94:G:0:T:2:N:0:O:5	.	0,69,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	7894	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:98:N:0:O:1	.	0,47,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	8077	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:133:C:0:G:3:T:0:N:0:O:0	.	3,49,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:104:C:3:G:0:T:0:N:0:O:2	.	0,52,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	8145	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	3,45,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	1,37,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:4:C:0:G:55:T:0:N:0:O:3	.	4,5,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:0:T:83:N:0:O:0	.	0,36,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:0:T:103:N:0:O:7	.	2,42,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,63,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	9561	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:102:G:0:T:3:N:0:O:2	.	0,61,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	9791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	0,46,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	1,38,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10139	G	A	G	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.020833333333333332	.	A:5:C:0:G:231:T:1:N:0:O:3	.	5,105,0,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10227	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	0,60,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10315	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:0:T:90:N:0:O:10	.	3,43,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.028708133971291867	.	A:6:C:0:G:202:T:0:N:0:O:1	.	6,76,0,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:75:G:0:T:4:N:0:O:2	.	0,43,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:65:T:0:N:0:O:2	.	2,12,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10525	C	G	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:2:T:0:N:0:O:1	.	0,41,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10527	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:56:G:0:T:2:N:0:O:24	.	0,63,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.02577319587628866	.	A:0:C:5:G:0:T:188:N:0:O:1	.	0,115,5,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11077	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	1,10,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:0:G:1:T:27:N:0:O:0	.	0,11,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11113	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:86:T:0:N:0:O:2	.	2,37,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:0:G:2:T:76:N:0:O:1	.	2,33,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11272	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	3,45,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11300	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:97:G:0:T:2:N:0:O:2	.	0,64,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:0:T:2:N:0:O:1	.	2,56,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.13580246913580246	.	A:0:C:70:G:0:T:11:N:0:O:0	.	0,45,11,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11750	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:98:G:0:T:2:N:0:O:4	.	1,39,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	11751	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:2:G:0:T:90:N:0:O:19	.	1,66,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,58,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11887	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	1,40,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:66:C:0:G:2:T:0:N:0:O:0	.	0,42,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:0:C:89:G:0:T:2:N:0:O:19	.	0,65,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	12263	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	1,55,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:77:T:0:N:0:O:21	.	0,85,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	12560	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:95:G:0:T:0:N:0:O:2	.	1,37,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:67:C:0:G:2:T:0:N:0:O:1	.	2,26,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:79:G:0:T:3:N:0:O:1	.	0,61,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:4:C:0:G:0:T:122:N:0:O:10	.	4,77,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,30,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,70,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13482	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:65:C:0:G:2:T:0:N:0:O:3	.	0,49,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:64:C:0:G:2:T:0:N:0:O:3	.	0,48,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	0,56,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:86:T:0:N:0:O:9	.	3,41,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:64:T:0:N:0:O:4	.	2,21,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.09375	.	A:6:C:0:G:58:T:0:N:0:O:0	.	6,24,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:34:C:0:G:1:T:0:N:0:O:1	.	0,6,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:2:T:0:N:0:O:1	.	2,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:119:G:0:T:4:N:0:O:1	.	0,52,4,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	14405	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,42,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	93	.	20	.	0.989247311827957	.	A:0:C:0:G:0:T:92:N:0:O:1	.	43,44,49,49	257.013	1214.5	.	.	.	.	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:87:G:0:T:3:N:0:O:0	.	0,60,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:0:G:3:T:0:N:0:O:1	.	3,51,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:102:T:0:N:0:O:0	.	3,53,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.10112359550561797	.	A:9:C:0:G:79:T:0:N:0:O:1	.	9,39,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:83:N:0:O:2	.	0,77,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	15422	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:86:C:0:G:0:T:2:N:0:O:2	.	0,48,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:87:C:0:G:3:T:0:N:0:O:0	.	0,47,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:5:G:0:T:102:N:0:O:1	.	0,71,5,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.1111111111111111	.	A:0:C:53:G:0:T:7:N:0:O:3	.	0,29,7,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	16000	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:50:G:0:T:2:N:0:O:5	.	1,15,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:98:G:0:T:3:N:0:O:2	.	0,65,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	16168	G	A	G	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.02032520325203252	.	A:5:C:0:G:240:T:0:N:0:O:1	.	5,126,0,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,70,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	16296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:120:C:0:G:3:T:0:N:0:O:0	.	3,69,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:1:C:0:G:97:T:3:N:0:O:0	.	0,34,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:84:T:0:N:0:O:2	.	4,22,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:76:T:0:N:0:O:2	.	3,20,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:0:G:3:T:89:N:0:O:1	.	0,55,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:2:G:0:T:0:N:0:O:0	.	2,38,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:48:C:0:G:1:T:0:N:0:O:1	.	1,7,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17172	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,61,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:70:G:1:T:3:N:0:O:0	.	0,54,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	17523	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:112:T:0:N:0:O:10	.	2,36,1,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:5:C:0:G:100:T:0:N:0:O:0	.	5,22,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,46,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.020512820512820513	.	A:0:C:191:G:0:T:4:N:0:O:0	.	1,94,3,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:124:G:0:T:3:N:0:O:5	.	0,90,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.06666666666666667	.	A:7:C:0:G:96:T:0:N:0:O:2	.	0,59,7,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	3,27,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:90:C:0:G:3:T:0:N:0:O:5	.	3,29,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:73:T:0:N:0:O:0	.	3,17,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	18099	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:93:N:0:O:5	.	0,44,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:0:C:91:G:0:T:6:N:0:O:1	.	0,55,6,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:0:G:4:T:80:N:0:O:0	.	3,29,1,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:1:C:0:G:105:T:4:N:0:O:3	.	0,63,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:0:G:60:T:0:N:0:O:0	.	2,10,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:28:C:0:G:0:T:1:N:0:O:1	.	0,9,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	18947	T	C	T	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.02074688796680498	.	A:0:C:5:G:0:T:229:N:0:O:7	.	0,139,5,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.04054054054054054	.	A:6:C:0:G:139:T:0:N:0:O:3	.	6,29,0,119	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19332	T	G	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:0:G:1:T:23:N:0:O:0	.	0,11,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19333	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	0,11,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19334	A	T	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:0:T:1:N:0:O:0	.	0,11,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19351	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:0:T:1:N:0:O:0	.	0,14,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19365	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	1,11,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19385	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:1:T:0:N:0:O:0	.	1,11,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19387	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:1:T:0:N:0:O:0	.	1,7,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19466	G	T	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:25:T:1:N:0:O:0	.	1,13,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19523	T	A	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:0:T:20:N:0:O:0	.	1,11,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19524	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:21:G:0:T:1:N:0:O:3	.	1,16,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	19559	G	A	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:0:G:19:T:0:N:0:O:0	.	1,5,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.01675977653631285	.	A:3:C:0:G:0:T:139:N:0:O:37	.	0,80,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:95:C:0:G:0:T:4:N:0:O:0	.	1,66,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19984	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	1,21,0,0	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:0:G:3:T:75:N:0:O:2	.	0,23,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:100:G:0:T:4:N:0:O:1	.	0,43,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:3:G:0:T:124:N:0:O:4	.	0,45,3,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20638	A	G	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:145:C:0:G:3:T:0:N:0:O:0	.	3,80,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:0:G:3:T:125:N:0:O:1	.	3,67,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,36,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:1:C:98:G:0:T:4:N:0:O:11	.	4,56,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:77:C:0:G:2:T:0:N:0:O:1	.	2,18,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	20939	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,40,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:65:C:0:G:2:T:0:N:0:O:0	.	0,1,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:81:T:0:N:0:O:6	.	0,8,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:0:C:0:G:2:T:47:N:0:O:0	.	2,8,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:0:C:0:G:68:T:6:N:0:O:15	.	0,68,6,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.014492753623188406	.	A:1:C:0:G:0:T:45:N:0:O:23	.	0,52,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:77:G:0:T:2:N:0:O:0	.	1,54,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:83:T:0:N:0:O:1	.	3,15,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:93:G:0:T:4:N:0:O:7	.	2,27,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:115:G:0:T:3:N:0:O:10	.	0,99,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:115:N:0:O:0	.	0,92,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:0:G:136:T:0:N:0:O:0	.	3,75,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.08088235294117647	.	A:0:C:0:G:11:T:125:N:0:O:0	.	11,56,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22329	C	G	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:1:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22330	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,8,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22331	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	1,9,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22351	A	T	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:0:T:1:N:0:O:0	.	0,10,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	22400	A	T	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:0:T:1:N:0:O:0	.	0,12,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22428	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:21:N:0:O:1	.	0,13,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22434	G	C	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:22:T:0:N:0:O:0	.	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22467	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,13,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	0,10,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:0:C:0:G:138:T:5:N:0:O:1	.	0,80,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:0:C:161:G:0:T:4:N:0:O:1	.	0,62,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.037037037037037035	.	A:0:C:0:G:6:T:129:N:0:O:27	.	0,83,6,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:97:G:0:T:4:N:0:O:12	.	1,87,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	23104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	1,71,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:0:C:4:G:0:T:155:N:0:O:0	.	0,86,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	128	.	20	.	0.9296875	.	A:0:C:0:G:119:T:0:N:0:O:9	.	69,78,50,50	70.0	1442.3	.	.	.	.	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.11363636363636363	.	A:0:C:78:G:0:T:10:N:0:O:0	.	0,60,10,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	23897	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:89:G:0:T:1:N:0:O:4	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:130:C:0:G:0:T:3:N:0:O:0	.	3,47,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:0:T:75:N:0:O:0	.	3,15,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,16,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,18,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:81:G:0:T:3:N:0:O:0	.	0,52,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:0:C:53:G:0:T:3:N:0:O:11	.	0,61,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:87:T:1:N:0:O:2	.	2,17,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.04201680672268908	.	A:113:C:0:G:5:T:0:N:0:O:1	.	5,45,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:5:C:102:G:0:T:5:N:0:O:4	.	0,75,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.026490066225165563	.	A:136:C:0:G:0:T:4:N:0:O:11	.	4,108,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:58:C:0:G:2:T:0:N:0:O:0	.	2,6,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:119:G:0:T:4:N:0:O:0	.	1,86,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:91:C:0:G:4:T:0:N:0:O:0	.	4,40,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	50	.	20	.	0.04	.	A:0:C:2:G:0:T:47:N:0:O:1	.	1,34,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	25231	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:82:G:0:T:2:N:0:O:2	.	0,52,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:99:C:0:G:0:T:4:N:0:O:0	.	4,46,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25593	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	1,22,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:1:G:51:T:0:N:0:O:0	.	2,14,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:74:G:0:T:0:N:0:O:35	.	1,52,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.15789473684210525	.	A:46:C:9:G:1:T:0:N:0:O:1	.	3,37,6,20	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25809	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:88:C:0:G:3:T:0:N:0:O:1	.	3,59,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,70,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:0:T:82:N:0:O:1	.	2,44,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:88:C:0:G:3:T:0:N:0:O:1	.	3,40,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25883	C	A	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:45:G:0:T:0:N:0:O:0	.	0,11,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:81:G:0:T:3:N:0:O:0	.	1,54,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	2,30,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	2,48,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:89:G:0:T:5:N:0:O:0	.	1,54,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:0:G:96:T:0:N:0:O:0	.	4,27,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.03529411764705882	.	A:0:C:164:G:0:T:6:N:0:O:0	.	0,132,6,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.043689320388349516	.	A:0:C:9:G:0:T:197:N:0:O:0	.	0,142,9,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26557	A	G	A	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02358490566037736	.	A:206:C:0:G:5:T:0:N:0:O:1	.	5,78,0,134	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:72:C:0:G:0:T:4:N:0:O:4	.	4,27,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.12121212121212122	.	A:8:C:0:G:57:T:0:N:0:O:1	.	8,13,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:79:G:0:T:3:N:0:O:2	.	0,65,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26754	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:90:T:0:N:0:O:1	.	3,48,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	0,64,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:68:N:0:O:2	.	0,46,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27013	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	0,46,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:68:C:0:G:2:T:0:N:0:O:0	.	2,16,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.06060606060606061	.	A:4:C:0:G:62:T:0:N:0:O:0	.	4,12,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.10526315789473684	.	A:0:C:51:G:0:T:6:N:0:O:0	.	0,41,6,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27156	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	1,41,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:88:N:0:O:0	.	0,50,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:181:C:0:G:0:T:4:N:0:O:0	.	4,66,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:57:C:0:G:2:T:0:N:0:O:1	.	1,7,1,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:73:T:0:N:0:O:3	.	1,19,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	27954	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:0:T:2:N:0:O:1	.	2,48,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	28089	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,43,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:2:C:0:G:1:T:64:N:0:O:1	.	0,30,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	28247	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,59,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	28387	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:2:G:0:T:0:N:0:O:0	.	0,52,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:84:C:0:G:1:T:3:N:0:O:4	.	3,34,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:68:G:0:T:3:N:0:O:5	.	0,36,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	119	.	20	.	1.0	.	A:119:C:0:G:0:T:0:N:0:O:0	.	31,31,88,88	485.463	2355.8	.	.	.	.	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:115:C:0:G:0:T:0:N:0:O:0	.	28,28,87,87	485.463	2355.8	.	.	.	.	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	1.0	.	A:0:C:117:G:0:T:0:N:0:O:0	.	30,30,87,87	485.463	2355.8	.	.	.	.	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,32,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00085	artic-pipeline	NB06	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:104:G:0:T:0:N:0:O:9	.	3,65,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	29124	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	1,27,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:84:T:0:N:0:O:3	.	3,17,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	29412	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:2:G:0:T:0:N:0:O:0	.	1,49,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:82:T:0:N:0:O:14	.	2,22,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:127:C:3:G:1:T:0:N:0:O:1	.	0,71,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00085	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	145	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	65	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:21:N:0:O:1	.	0,7,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:0:T:1:N:0:O:0	.	0,6,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	98	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	1,4,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	101	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	1,3,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	136	A	T	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:20:C:1:G:0:T:1:N:0:O:0	.	0,2,1,20	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	138	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	0,2,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:0:T:1:N:0:O:0	.	0,3,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:25:G:0:T:1:N:0:O:1	.	0,3,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	141	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.1	.	A:0:C:2:G:0:T:18:N:0:O:0	.	0,3,2,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	145	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,3,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	161	A	T	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:0:T:1:N:0:O:0	.	0,2,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	162	C	G	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:1:T:0:N:0:O:0	.	0,3,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	175	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:21:N:0:O:0	.	0,3,1,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	197	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	0,4,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	238	T	G	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:1:T:25:N:0:O:0	.	1,6,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	292	C	G	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:1:T:0:N:0:O:0	.	0,5,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:0:T:24:N:0:O:0	.	1,2,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:26:G:0:T:1:N:0:O:0	.	1,2,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	369	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.018867924528301886	.	A:0:C:3:G:0:T:147:N:0:O:9	.	0,67,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	448	G	T	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:0:C:0:G:143:T:4:N:0:O:8	.	0,51,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:89:N:0:O:6	.	2,21,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:2:G:0:T:96:N:0:O:7	.	2,25,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	108	.	20	.	0.9907407407407407	.	A:107:C:0:G:0:T:0:N:0:O:1	.	24,25,83,83	70.0	2986.8	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:141:C:0:G:3:T:0:N:0:O:1	.	3,34,0,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	672	A	G	A	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.024896265560165973	.	A:232:C:0:G:6:T:0:N:0:O:3	.	4,80,2,161	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.029166666666666667	.	A:7:C:0:G:231:T:0:N:0:O:2	.	7,76,0,164	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:3:G:0:T:79:N:0:O:0	.	1,62,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:1:T:0:N:0:O:1	.	0,10,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.09803921568627451	.	A:5:C:0:G:41:T:0:N:0:O:5	.	5,19,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,71,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:3:C:0:G:65:T:0:N:0:O:2	.	3,35,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:4:C:0:G:195:T:0:N:0:O:1	.	4,99,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:96:G:0:T:4:N:0:O:1	.	0,53,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:63:C:3:G:0:T:0:N:0:O:2	.	3,44,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:43:C:0:G:1:T:0:N:0:O:6	.	0,19,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:70:C:0:G:0:T:2:N:0:O:0	.	0,51,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:96:N:0:O:1	.	0,46,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	0,3,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:31:C:0:G:1:T:0:N:0:O:1	.	0,1,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	1963	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:0:C:4:G:0:T:112:N:0:O:1	.	1,54,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:68:C:2:G:0:T:0:N:0:O:0	.	0,30,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:5:C:0:G:92:T:0:N:0:O:0	.	5,22,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	2205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:104:C:0:G:3:T:0:N:0:O:0	.	2,28,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04065040650406504	.	A:118:C:5:G:0:T:0:N:0:O:0	.	5,41,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2636	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:128:G:0:T:3:N:0:O:1	.	0,89,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:133:C:4:G:0:T:1:N:0:O:1	.	4,76,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,75,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,88,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:0:G:79:T:5:N:0:O:9	.	0,59,5,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	193	.	20	.	0.9222797927461139	.	A:0:C:4:G:0:T:178:N:0:O:11	.	58,68,120,125	265.686	695.9	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	3205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:98:C:0:G:2:T:0:N:0:O:5	.	1,33,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:1:C:77:G:0:T:2:N:0:O:2	.	0,34,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:79:G:0:T:2:N:0:O:2	.	0,32,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:41:C:0:G:2:T:0:N:0:O:0	.	0,0,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	3622	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:116:G:0:T:3:N:0:O:0	.	2,59,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:87:T:2:N:0:O:5	.	2,51,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.023255813953488372	.	A:5:C:0:G:197:T:0:N:0:O:13	.	5,54,0,161	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4113	C	T	T	14	new position at high frequency	Pass	False	True	True	267	.	20	.	0.9812734082397003	.	A:0:C:0:G:0:T:262:N:0:O:5	.	118,123,144,144	209.237	1532.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.016666666666666666	.	A:2:C:0:G:0:T:93:N:0:O:25	.	0,53,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.022988505747126436	.	A:0:C:169:G:0:T:4:N:0:O:1	.	0,121,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.05649717514124294	.	A:0:C:0:G:150:T:10:N:0:O:17	.	0,127,10,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.02553191489361702	.	A:6:C:0:G:224:T:0:N:0:O:5	.	0,99,6,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.02608695652173913	.	A:0:C:204:G:0:T:6:N:0:O:20	.	0,113,6,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:93:G:0:T:2:N:0:O:6	.	0,81,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:0:G:4:T:119:N:0:O:6	.	0,69,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:3:C:0:G:0:T:138:N:0:O:9	.	2,81,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5097	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:0:T:2:N:0:O:1	.	0,74,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5502	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:78:T:0:N:0:O:1	.	3,24,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:0:C:76:G:0:T:6:N:0:O:1	.	0,73,6,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:124:N:0:O:2	.	0,85,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:2:G:0:T:93:N:0:O:1	.	0,65,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,30,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	5853	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:0:T:94:N:0:O:0	.	2,54,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:109:G:0:T:3:N:0:O:1	.	0,79,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.06382978723404255	.	A:0:C:88:G:0:T:6:N:0:O:0	.	0,72,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:71:T:0:N:0:O:2	.	2,17,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,33,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6427	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:0:T:90:N:0:O:5	.	2,33,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6428	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:93:G:0:T:2:N:0:O:3	.	2,30,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:119:G:0:T:3:N:0:O:0	.	0,74,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:3:T:97:N:0:O:2	.	0,67,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,74,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:81:G:0:T:2:N:0:O:1	.	0,56,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.04020100502512563	.	A:186:C:0:G:8:T:0:N:0:O:5	.	8,85,0,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:93:T:0:N:0:O:1	.	3,27,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:1:N:0:O:0	.	2,28,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:128:T:3:N:0:O:0	.	0,68,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:78:C:0:G:0:T:3:N:0:O:4	.	0,64,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:88:T:0:N:0:O:0	.	3,39,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7262	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:92:G:0:T:2:N:0:O:17	.	0,80,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7266	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:4:G:0:T:94:N:0:O:0	.	0,56,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7392	C	G	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:68:G:2:T:0:N:0:O:0	.	0,53,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:80:T:0:N:0:O:0	.	2,24,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,32,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:76:G:0:T:2:N:0:O:21	.	0,81,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:0:T:2:N:0:O:0	.	2,37,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:3:G:0:T:0:N:0:O:0	.	3,50,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7797	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:75:C:0:G:2:T:0:N:0:O:0	.	1,17,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:93:C:0:G:4:T:0:N:0:O:1	.	4,39,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,47,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,39,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,42,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:4:G:0:T:87:N:0:O:0	.	0,42,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:1:C:3:G:0:T:94:N:0:O:0	.	0,46,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,49,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	1,51,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	0.9916666666666667	.	A:0:C:1:G:0:T:119:N:0:O:0	.	45,46,74,74	209.237	1069.1	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	8833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	3,47,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.060240963855421686	.	A:5:C:0:G:73:T:0:N:0:O:5	.	5,10,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:0:T:86:N:0:O:9	.	1,44,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,30,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9430	C	T	T	17	accept high frequency variant	Pass	False	True	True	107	.	20	.	0.9813084112149533	.	A:0:C:0:G:0:T:105:N:0:O:2	.	43,45,62,62	410.786	1420.9	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:0:T:109:N:0:O:0	.	0,42,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9502	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:94:G:0:T:2:N:0:O:4	.	1,53,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:72:G:0:T:2:N:0:O:35	.	2,104,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9629	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	1,43,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9797	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	2,53,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	9798	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:95:G:0:T:3:N:0:O:0	.	0,69,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10038	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:123:G:0:T:3:N:0:O:1	.	2,57,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10130	A	T	A	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.026881720430107527	.	A:181:C:0:G:0:T:5:N:0:O:0	.	5,96,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10283	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:116:T:3:N:0:O:0	.	0,66,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:83:T:0:N:0:O:1	.	5,22,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:97:G:0:T:3:N:0:O:0	.	0,41,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	10443	T	G	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:3:T:128:N:0:O:3	.	1,45,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10609	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:1:G:2:T:76:N:0:O:0	.	0,38,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.027777777777777776	.	A:0:C:6:G:0:T:210:N:0:O:0	.	0,117,6,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,67,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.05454545454545454	.	A:0:C:0:G:6:T:101:N:0:O:3	.	0,61,6,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11138	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:97:T:2:N:0:O:4	.	0,75,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:88:G:0:T:2:N:0:O:5	.	0,78,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.023809523809523808	.	A:0:C:0:G:126:T:4:N:0:O:38	.	3,111,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:0:G:3:T:89:N:0:O:0	.	3,51,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:116:T:3:N:0:O:0	.	2,70,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:96:G:0:T:3:N:0:O:1	.	0,61,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:92:T:0:N:0:O:1	.	0,59,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:0:T:3:N:0:O:1	.	3,49,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11800	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:1:C:0:G:89:T:2:N:0:O:0	.	1,55,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11810	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	0,49,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.019417475728155338	.	A:0:C:0:G:130:T:4:N:0:O:72	.	0,64,4,142	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.07142857142857142	.	A:52:C:0:G:4:T:0:N:0:O:0	.	0,33,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	12133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:76:N:0:O:0	.	1,28,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12418	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:87:N:0:O:1	.	0,62,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:2:C:82:G:0:T:3:N:0:O:10	.	0,63,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:4:C:0:G:80:T:0:N:0:O:3	.	4,22,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:96:G:0:T:0:N:0:O:1	.	1,60,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:1:C:74:G:0:T:6:N:0:O:0	.	0,59,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.028708133971291867	.	A:6:C:0:G:203:T:0:N:0:O:0	.	6,69,0,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	0,24,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:4:C:0:G:0:T:117:N:0:O:6	.	4,63,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:96:C:0:G:3:T:0:N:0:O:1	.	3,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:68:G:0:T:4:N:0:O:1	.	0,67,4,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:0:G:81:T:0:N:0:O:6	.	5,26,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:4:C:86:G:0:T:0:N:0:O:4	.	4,45,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:4:C:0:G:70:T:0:N:0:O:5	.	4,26,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:79:T:0:N:0:O:0	.	4,35,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.0967741935483871	.	A:27:C:0:G:3:T:0:N:0:O:1	.	0,3,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,52,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:86:G:0:T:2:N:0:O:7	.	0,79,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,73,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:70:C:0:G:2:T:0:N:0:O:1	.	2,38,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,74,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:101:N:0:O:5	.	0,65,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:8:C:0:G:91:T:0:N:0:O:1	.	8,27,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.10344827586206896	.	A:0:C:51:G:0:T:6:N:0:O:1	.	0,32,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	16000	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:58:G:0:T:2:N:0:O:6	.	0,13,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	16391	C	T	C	12	misc mixed variant	Check	False	False	True	92	.	20	.	0.30434782608695654	.	A:0:C:55:G:0:T:28:N:0:O:9	.	14,44,14,48	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	16393	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:70:G:0:T:2:N:0:O:0	.	2,21,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:112:T:3:N:0:O:3	.	3,47,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	3,21,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:0:C:0:G:5:T:80:N:0:O:2	.	0,39,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:5:C:0:G:115:T:2:N:0:O:35	.	0,52,5,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	16842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:75:C:0:G:3:T:0:N:0:O:2	.	0,5,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:4:C:0:G:180:T:0:N:0:O:1	.	4,25,0,160	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:69:C:0:G:2:T:0:N:0:O:1	.	2,8,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:0:T:67:N:0:O:4	.	2,14,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:83:G:0:T:4:N:0:O:0	.	0,69,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:88:T:0:N:0:O:0	.	5,36,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:81:G:0:T:3:N:0:O:1	.	0,52,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:62:G:0:T:3:N:0:O:1	.	1,44,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:81:C:0:G:1:T:2:N:0:O:8	.	0,37,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.11009174311926606	.	A:12:C:0:G:97:T:0:N:0:O:0	.	0,61,12,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17875	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:86:C:2:G:0:T:0:N:0:O:12	.	1,39,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	17926	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:119:T:3:N:0:O:0	.	3,63,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:138:G:0:T:3:N:0:O:3	.	0,91,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	105	.	20	.	0.9619047619047619	.	A:0:C:101:G:0:T:4:N:0:O:0	.	50,51,51,54	272.247	1625.9	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:0:G:111:T:0:N:0:O:3	.	4,52,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.02197802197802198	.	A:4:C:0:G:177:T:0:N:0:O:1	.	4,39,0,143	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,27,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:47:N:0:O:0	.	1,34,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19322	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	0,17,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19373	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	1,11,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19380	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,24,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19386	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	1,27,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:1:T:0:N:0:O:1	.	1,26,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19480	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:36:T:0:N:0:O:1	.	1,16,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.09375	.	A:0:C:29:G:0:T:3:N:0:O:0	.	0,26,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	19488	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:38:G:0:T:1:N:0:O:1	.	0,29,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	19489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,26,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19558	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:0:T:1:N:0:O:0	.	1,14,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19675	C	A	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:4:C:121:G:0:T:0:N:0:O:2	.	0,60,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:114:T:0:N:0:O:2	.	0,55,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19722	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	0,33,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	19724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:117:N:0:O:0	.	0,64,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:105:G:0:T:3:N:0:O:0	.	0,46,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:153:C:0:G:4:T:0:N:0:O:1	.	4,90,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:198:C:0:G:5:T:0:N:0:O:3	.	5,81,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:87:C:0:G:4:T:0:N:0:O:4	.	4,26,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	20901	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:76:T:0:N:0:O:4	.	0,15,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.09090909090909091	.	A:0:C:0:G:72:T:8:N:0:O:8	.	0,65,8,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,60,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:71:G:0:T:2:N:0:O:2	.	0,56,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,49,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:74:C:0:G:2:T:0:N:0:O:2	.	2,12,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:5:C:0:G:80:T:0:N:0:O:3	.	5,18,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.07446808510638298	.	A:0:C:85:G:0:T:7:N:0:O:2	.	6,25,1,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	0,73,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,70,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:114:T:0:N:0:O:8	.	3,49,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	22121	A	C	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:123:C:3:G:0:T:0:N:0:O:0	.	1,77,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:3:T:116:N:0:O:0	.	2,36,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:120:G:0:T:3:N:0:O:2	.	0,59,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.0297029702970297	.	A:0:C:0:G:6:T:168:N:0:O:28	.	0,106,6,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:119:G:0:T:4:N:0:O:15	.	1,119,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:89:C:0:G:3:T:0:N:0:O:3	.	2,39,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23677	T	C	C	14	new position at high frequency	Pass	False	True	True	115	.	20	.	0.9826086956521739	.	A:0:C:113:G:0:T:0:N:0:O:2	.	55,57,58,58	279.237	1944.2	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23863	A	G	G	14	new position at high frequency	Pass	False	True	True	133	.	20	.	0.9924812030075187	.	A:1:C:0:G:132:T:0:N:0:O:0	.	63,63,69,70	278.474	2068.0	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.125	.	A:0:C:77:G:0:T:11:N:0:O:0	.	0,69,11,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,66,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:80:G:0:T:2:N:0:O:5	.	1,54,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	23912	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:96:G:0:T:1:N:0:O:3	.	4,45,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	0.9918032786885246	.	A:0:C:1:G:0:T:121:N:0:O:0	.	53,53,68,69	280.0	628.5	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:78:T:1:N:0:O:1	.	2,12,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:70:G:0:T:3:N:0:O:1	.	0,57,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.07352941176470588	.	A:0:C:57:G:0:T:5:N:0:O:6	.	0,57,5,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24321	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:2:G:0:T:0:N:0:O:0	.	1,39,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:2:C:89:G:0:T:3:N:0:O:2	.	0,40,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:110:N:0:O:3	.	1,61,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	2,33,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:106:T:1:N:0:O:0	.	0,72,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:1:C:0:G:2:T:97:N:0:O:3	.	0,69,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24959	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,49,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,35,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	25205	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:120:N:0:O:0	.	1,83,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:96:C:0:G:2:T:0:N:0:O:3	.	2,67,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:96:N:0:O:1	.	3,51,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:97:G:0:T:0:N:0:O:10	.	4,71,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:64:G:0:T:0:N:0:O:34	.	3,32,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.07142857142857142	.	A:51:C:4:G:0:T:0:N:0:O:1	.	1,34,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,68,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25848	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:0:G:2:T:71:N:0:O:0	.	2,53,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25883	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:53:G:0:T:2:N:0:O:0	.	0,15,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25884	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:3:G:0:T:68:N:0:O:0	.	1,36,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:91:C:2:G:0:T:0:N:0:O:2	.	2,37,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26094	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:1:G:0:T:120:N:0:O:4	.	0,86,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:116:G:0:T:0:N:0:O:17	.	3,71,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:0:C:79:G:0:T:2:N:0:O:34	.	0,95,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,21,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.023809523809523808	.	A:0:C:5:G:0:T:205:N:0:O:0	.	0,131,5,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.08695652173913043	.	A:8:C:0:G:82:T:1:N:0:O:1	.	8,15,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	113	.	20	.	1.0	.	A:0:C:113:G:0:T:0:N:0:O:0	.	58,58,55,55	342.247	1225.4	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:83:G:0:T:4:N:0:O:2	.	0,61,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:0:G:2:T:0:N:0:O:2	.	2,34,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:97:G:0:T:2:N:0:O:4	.	0,58,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:87:C:0:G:2:T:0:N:0:O:7	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:81:C:0:G:3:T:0:N:0:O:0	.	3,24,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,19,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.08450704225352113	.	A:0:C:63:G:0:T:6:N:0:O:2	.	0,55,6,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:73:G:1:T:2:N:0:O:1	.	0,61,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:2:G:0:T:50:N:0:O:1	.	2,47,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:176:C:0:G:0:T:4:N:0:O:0	.	1,61,3,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:88:C:0:G:2:T:0:N:0:O:5	.	2,31,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27635	C	T	T	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	1.0	.	A:0:C:0:G:0:T:131:N:0:O:0	.	72,72,59,59	210.0	1492.5	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:2:G:0:T:0:N:0:O:1	.	2,42,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	27925	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.05303030303030303	.	A:7:C:123:G:0:T:0:N:0:O:2	.	4,70,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:124:G:0:T:0:N:0:O:0	.	66,66,58,58	210.0	1776.4	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	237	.	20	.	0.9873417721518988	.	A:0:C:234:G:0:T:2:N:0:O:1	.	121,124,113,113	193.922	1326.9	.	.	.	.	.	.	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:0:T:65:N:0:O:2	.	0,32,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:80:C:0:G:1:T:2:N:0:O:2	.	2,35,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28292	C	A	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:72:G:0:T:1:N:0:O:5	.	1,56,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28387	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:2:T:0:N:0:O:0	.	2,53,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:76:G:0:T:1:N:0:O:3	.	2,55,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:97:G:0:T:3:N:0:O:0	.	0,51,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:111:G:0:T:3:N:0:O:7	.	0,65,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:0:C:57:G:0:T:3:N:0:O:1	.	0,13,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	28932	C	G	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:63:G:2:T:1:N:0:O:3	.	0,12,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29055	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:47:C:1:G:0:T:0:N:0:O:2	.	0,13,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29056	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:34:C:0:G:1:T:0:N:0:O:2	.	0,4,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:96:G:0:T:3:N:0:O:4	.	2,47,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:82:C:0:G:2:T:0:N:0:O:1	.	2,36,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:1:C:2:G:70:T:0:N:0:O:0	.	2,35,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29421	C	T	T	14	new position at high frequency	Pass	False	True	True	131	.	20	.	0.9923664122137404	.	A:0:C:0:G:0:T:130:N:0:O:1	.	76,77,54,54	198.823	610.1	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:2:C:0:G:90:T:0:N:0:O:16	.	2,27,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	114	.	20	.	0.8245614035087719	.	A:4:C:0:G:94:T:1:N:0:O:15	.	34,51,60,63	260.412	1004.0	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00086	artic-pipeline	NB08	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.056074766355140186	.	A:0:C:6:G:99:T:0:N:0:O:2	.	6,29,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00086	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	76	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,6,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.09523809523809523	.	A:0:C:38:G:0:T:4:N:0:O:0	.	0,6,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	98	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:42:G:0:T:1:N:0:O:2	.	0,5,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	120	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,6,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:43:N:0:O:1	.	0,5,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:30:G:0:T:1:N:0:O:4	.	0,8,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	230	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:47:G:0:T:1:N:0:O:1	.	0,6,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	84	.	20	.	1.0	.	A:84:C:0:G:0:T:0:N:0:O:0	.	19,19,65,65	490.0	2263.8	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:112:C:0:G:3:T:0:N:0:O:1	.	3,24,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	0,42,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	1,40,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:129:T:0:N:0:O:0	.	0,70,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:2:C:0:G:59:T:0:N:0:O:0	.	2,17,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:59:G:0:T:2:N:0:O:4	.	0,55,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:2:C:0:G:51:T:0:N:0:O:4	.	2,18,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:77:G:0:T:4:N:0:O:3	.	0,60,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:0:G:72:T:0:N:0:O:2	.	3,33,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.07476635514018691	.	A:0:C:98:G:0:T:8:N:0:O:1	.	0,40,8,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,37,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:2:T:0:N:0:O:2	.	1,17,1,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.021739130434782608	.	A:0:C:222:G:0:T:5:N:0:O:3	.	0,89,5,141	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:1:N:0:O:1	.	2,39,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.04	.	A:0:C:5:G:0:T:115:N:0:O:5	.	0,47,5,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:3:T:0:N:0:O:0	.	0,38,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1885	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,43,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	1991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:3:G:0:T:125:N:0:O:3	.	0,69,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:80:G:0:T:2:N:0:O:2	.	0,59,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:2:C:0:G:90:T:0:N:0:O:20	.	2,39,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.12	.	A:12:C:0:G:86:T:0:N:0:O:2	.	12,29,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	2299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:93:G:0:T:2:N:0:O:8	.	0,72,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	2461	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:96:N:0:O:3	.	1,51,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:66:T:0:N:0:O:3	.	0,18,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,45,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:101:T:0:N:0:O:0	.	3,48,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	2850	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:118:N:0:O:2	.	0,75,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3015	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	0,45,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:95:C:0:G:3:T:0:N:0:O:0	.	3,29,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:4:C:125:G:0:T:0:N:0:O:0	.	0,54,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:0:G:69:T:3:N:0:O:12	.	0,60,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	204	.	20	.	0.9362745098039216	.	A:0:C:3:G:2:T:191:N:0:O:8	.	70,80,121,124	401.913	698.0	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,60,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:47:C:0:G:0:T:1:N:0:O:2	.	1,22,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,69,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:83:T:0:N:0:O:2	.	0,51,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3979	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,64,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:95:G:0:T:2:N:0:O:5	.	0,65,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.03271028037383177	.	A:0:C:0:G:199:T:7:N:0:O:8	.	0,149,7,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:1:C:3:G:0:T:98:N:0:O:4	.	0,85,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:79:C:0:G:0:T:4:N:0:O:7	.	0,59,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:0:G:126:T:3:N:0:O:0	.	3,63,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:0:G:3:T:132:N:0:O:10	.	0,86,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:0:G:3:T:0:N:0:O:0	.	3,48,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:126:T:0:N:0:O:0	.	1,56,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:0:G:119:T:0:N:0:O:1	.	2,51,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:48:N:0:O:1	.	1,45,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.1111111111111111	.	A:0:C:56:G:0:T:7:N:0:O:0	.	0,56,7,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:75:N:0:O:0	.	0,52,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	5852	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	2,48,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.9621212121212122	.	A:0:C:0:G:0:T:127:N:0:O:5	.	68,73,59,59	349.237	1044.8	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:90:G:0:T:5:N:0:O:0	.	0,72,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:77:T:0:N:0:O:1	.	2,29,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6307	G	A	G	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:1:C:0:G:48:T:0:N:0:O:4	.	1,34,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,56,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,29,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,40,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:88:N:0:O:2	.	0,58,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.037914691943127965	.	A:193:C:0:G:8:T:1:N:0:O:9	.	8,82,0,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:80:C:0:G:0:T:6:N:0:O:2	.	0,51,6,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:3:T:0:N:0:O:0	.	3,65,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.0847457627118644	.	A:5:C:0:G:53:T:0:N:0:O:1	.	5,17,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:64:T:0:N:0:O:1	.	2,17,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:2:C:0:G:56:T:0:N:0:O:3	.	2,17,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:95:C:0:G:0:T:3:N:0:O:0	.	3,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	7819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:67:G:0:T:2:N:0:O:3	.	2,43,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	8013	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:104:T:0:N:0:O:1	.	3,56,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,50,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,51,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:5:G:0:T:103:N:0:O:0	.	0,60,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	1,36,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	119	.	20	.	0.9915966386554622	.	A:0:C:1:G:0:T:118:N:0:O:0	.	64,65,54,54	280.0	1190.9	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.06557377049180328	.	A:4:C:1:G:54:T:0:N:0:O:2	.	4,9,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:0:G:123:T:3:N:0:O:0	.	0,59,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:0:C:149:G:0:T:4:N:0:O:1	.	0,135,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:0:C:5:G:0:T:149:N:0:O:3	.	0,130,5,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	9836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:124:G:0:T:3:N:0:O:1	.	0,60,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:0:T:90:N:0:O:3	.	0,25,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10452	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:2:G:0:T:0:N:0:O:0	.	0,53,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:1:C:96:G:0:T:2:N:0:O:1	.	0,56,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,35,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:70:N:0:O:6	.	0,58,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,57,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,8,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:0:G:4:T:91:N:0:O:4	.	0,51,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:95:G:0:T:0:N:0:O:8	.	3,44,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11108	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	1,46,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11124	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,51,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.018404907975460124	.	A:0:C:0:G:125:T:3:N:0:O:35	.	3,80,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,40,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:95:C:0:G:0:T:3:N:0:O:1	.	3,59,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11825	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:118:C:3:G:0:T:0:N:0:O:1	.	3,58,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,65,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:54:C:0:G:2:T:0:N:0:O:0	.	0,32,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:60:G:0:T:5:N:0:O:16	.	0,59,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	12265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	12322	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:133:T:0:N:0:O:0	.	3,66,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:89:T:0:N:0:O:1	.	3,25,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	125	.	20	.	0.992	.	A:124:C:0:G:0:T:0:N:0:O:1	.	58,59,66,66	350.0	1034.6	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:95:G:0:T:0:N:0:O:1	.	0,53,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:70:G:0:T:3:N:0:O:1	.	0,59,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:107:C:0:G:3:T:0:N:0:O:2	.	3,54,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:122:N:0:O:11	.	0,50,3,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:1:C:128:G:0:T:3:N:0:O:1	.	3,46,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.03428571428571429	.	A:6:C:0:G:0:T:151:N:0:O:18	.	6,87,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:1:C:75:G:0:T:7:N:0:O:2	.	0,73,7,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	0,56,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13486	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:94:T:2:N:0:O:0	.	1,46,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:80:T:0:N:0:O:7	.	2,24,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:77:G:0:T:2:N:0:O:3	.	0,44,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:84:G:0:T:0:N:0:O:4	.	3,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,39,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.07258064516129033	.	A:113:C:0:G:9:T:0:N:0:O:2	.	1,40,8,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:4:C:0:G:113:T:0:N:0:O:0	.	4,37,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:67:G:0:T:4:N:0:O:2	.	0,47,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	14409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:96:N:0:O:3	.	0,41,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14444	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,47,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,45,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:93:T:0:N:0:O:1	.	2,13,1,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	3,45,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:94:G:0:T:3:N:0:O:6	.	0,81,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:78:G:0:T:1:N:0:O:2	.	2,49,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:88:C:0:G:3:T:0:N:0:O:1	.	3,47,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,27,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:78:N:0:O:3	.	0,76,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15268	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:87:T:0:N:0:O:7	.	2,25,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15272	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:113:C:3:G:0:T:0:N:0:O:13	.	1,56,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,66,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	0,51,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15673	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:3:T:118:N:0:O:0	.	3,63,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	2,61,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.078125	.	A:0:C:59:G:0:T:5:N:0:O:0	.	0,39,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	16029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:119:N:0:O:0	.	0,79,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:76:T:0:N:0:O:7	.	1,18,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16263	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	1,56,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:0:G:2:T:75:N:0:O:0	.	2,26,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04032258064516129	.	A:0:C:0:G:115:T:5:N:0:O:4	.	5,58,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:4:T:100:N:0:O:1	.	0,62,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.017964071856287425	.	A:3:C:0:G:128:T:0:N:0:O:36	.	0,78,3,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16883	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:97:G:0:T:3:N:0:O:2	.	0,35,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	16999	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:108:C:0:G:4:T:0:N:0:O:0	.	4,34,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.046153846153846156	.	A:61:C:3:G:0:T:0:N:0:O:1	.	3,33,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.022727272727272728	.	A:4:C:0:G:168:T:0:N:0:O:4	.	4,35,0,141	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:1:G:2:T:93:N:0:O:1	.	0,61,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:73:G:0:T:3:N:0:O:2	.	0,49,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	17531	T	C	C	17	accept high frequency variant	Pass	False	True	True	118	.	20	.	0.9830508474576272	.	A:0:C:116:G:0:T:1:N:0:O:1	.	51,51,65,67	420.0	915.8	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	17571	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:1:T:83:N:0:O:0	.	0,48,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	0,41,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:0:C:67:G:0:T:4:N:0:O:1	.	0,44,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:85:C:0:G:0:T:3:N:0:O:10	.	0,41,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.09734513274336283	.	A:11:C:0:G:102:T:0:N:0:O:0	.	0,61,11,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	18119	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:92:N:0:O:2	.	0,44,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:0:G:4:T:76:N:0:O:0	.	4,30,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:94:G:0:T:2:N:0:O:7	.	2,28,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	18487	A	C	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:142:C:3:G:0:T:0:N:0:O:2	.	3,73,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:0:G:136:T:3:N:0:O:3	.	0,91,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	90	.	20	.	0.9777777777777777	.	A:0:C:88:G:0:T:2:N:0:O:0	.	40,41,48,49	280.0	1458.3	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,43,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	18947	T	C	T	16	ignore low frequency variant	Pass	False	False	True	272	.	20	.	0.022058823529411766	.	A:0:C:6:G:0:T:253:N:0:O:13	.	0,153,6,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19118	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:1:C:143:G:0:T:3:N:0:O:3	.	0,67,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.041379310344827586	.	A:6:C:0:G:137:T:1:N:0:O:1	.	6,26,0,119	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19277	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:45:T:1:N:0:O:0	.	1,20,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,23,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,14,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19292	G	T	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:0:G:48:T:1:N:0:O:2	.	1,23,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19316	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19317	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:42:G:0:T:0:N:0:O:4	.	1,20,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19327	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:38:T:0:N:0:O:0	.	1,17,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,10,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	0,24,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	0,21,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19394	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	1,21,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19433	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,18,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19438	C	A	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:39:G:0:T:0:N:0:O:0	.	0,21,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19463	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,15,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:31:T:0:N:0:O:0	.	1,8,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19563	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:32:T:0:N:0:O:1	.	1,9,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19565	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	1,16,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.01507537688442211	.	A:3:C:0:G:0:T:145:N:0:O:51	.	0,59,3,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:0:G:0:T:3:N:0:O:0	.	0,51,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:88:N:0:O:4	.	0,45,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	1,34,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:4:C:0:G:191:T:0:N:0:O:1	.	4,48,0,148	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	20676	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,80,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,79,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:166:C:0:G:4:T:0:N:0:O:2	.	4,68,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,33,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21078	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:96:C:2:G:0:T:0:N:0:O:3	.	0,34,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.06779661016949153	.	A:0:C:0:G:4:T:55:N:0:O:0	.	2,10,2,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.10638297872340426	.	A:0:C:0:G:77:T:10:N:0:O:7	.	0,60,10,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:95:G:0:T:3:N:0:O:0	.	0,57,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:92:T:0:N:0:O:3	.	2,33,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:111:G:0:T:4:N:0:O:0	.	0,71,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:2:G:0:T:42:N:0:O:20	.	0,42,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:98:N:0:O:0	.	2,41,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:91:G:0:T:3:N:0:O:6	.	0,33,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21743	A	C	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:129:C:3:G:0:T:0:N:0:O:2	.	0,82,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:98:G:0:T:3:N:0:O:7	.	0,80,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:94:N:0:O:2	.	0,77,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:0:G:119:T:0:N:0:O:8	.	3,56,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:79:T:0:N:0:O:0	.	4,34,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:0:C:0:G:6:T:92:N:0:O:0	.	6,36,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	22223	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:91:N:0:O:1	.	2,36,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	22550	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:94:G:0:T:3:N:0:O:1	.	3,38,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:118:G:0:T:3:N:0:O:0	.	0,76,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0213903743315508	.	A:0:C:0:G:4:T:150:N:0:O:33	.	0,99,4,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23112	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:103:N:0:O:5	.	0,70,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:58:C:0:G:2:T:0:N:0:O:0	.	1,35,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:41:C:0:G:2:T:1:N:0:O:0	.	2,9,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23534	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:0:T:2:N:0:O:0	.	2,37,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:5:C:0:G:63:T:0:N:0:O:8	.	5,43,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23656	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:90:C:0:G:2:T:0:N:0:O:3	.	2,59,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.16	.	A:0:C:82:G:0:T:16:N:0:O:2	.	0,70,16,30	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23962	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:0:T:123:N:0:O:2	.	3,46,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:142:C:0:G:0:T:3:N:0:O:0	.	1,67,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:5:C:0:G:0:T:82:N:0:O:0	.	2,25,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	23996	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:117:G:0:T:0:N:0:O:4	.	0,63,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	1.0	.	A:0:C:0:G:0:T:133:N:0:O:0	.	58,58,75,75	210.0	660.5	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:72:G:0:T:3:N:0:O:0	.	0,60,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,61,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24178	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:3:G:0:T:0:N:0:O:0	.	0,51,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24237	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:84:G:0:T:3:N:0:O:0	.	0,48,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,3,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:90:C:0:G:4:T:0:N:0:O:0	.	4,42,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	0,64,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:97:N:0:O:0	.	0,67,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	40	.	20	.	0.1	.	A:0:C:4:G:0:T:35:N:0:O:1	.	4,34,0,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	25243	A	T	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:126:C:0:G:0:T:3:N:0:O:0	.	0,76,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	25358	A	C	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:131:C:3:G:0:T:0:N:0:O:0	.	3,55,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:121:C:0:G:0:T:3:N:0:O:0	.	3,46,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:79:G:0:T:0:N:0:O:34	.	3,38,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:54:C:3:G:0:T:0:N:0:O:5	.	0,35,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:99:C:0:G:5:T:0:N:0:O:4	.	5,37,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	1,51,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	26309	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:82:G:0:T:2:N:0:O:3	.	1,58,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:2:G:0:T:51:N:0:O:0	.	1,51,1,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	1,29,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	3,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.053763440860215055	.	A:0:C:176:G:0:T:10:N:0:O:0	.	0,158,10,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.03255813953488372	.	A:0:C:7:G:0:T:208:N:0:O:0	.	0,167,7,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:90:G:0:T:2:N:0:O:4	.	2,46,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.17073170731707318	.	A:14:C:0:G:68:T:0:N:0:O:0	.	14,17,0,65	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	126	.	20	.	0.9761904761904762	.	A:0:C:123:G:0:T:1:N:0:O:2	.	78,81,45,45	490.0	1616.1	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:1:C:3:G:105:T:0:N:0:O:1	.	2,46,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:76:C:0:G:4:T:0:N:0:O:8	.	4,39,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:7:C:0:G:77:T:0:N:0:O:0	.	7,28,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.07216494845360824	.	A:0:C:90:G:0:T:7:N:0:O:0	.	0,64,7,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:97:G:0:T:3:N:0:O:2	.	0,65,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:83:G:0:T:0:N:0:O:1	.	4,53,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:115:C:0:G:0:T:4:N:0:O:19	.	4,92,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:79:T:0:N:0:O:7	.	4,25,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:124:G:0:T:0:N:0:O:0	.	57,57,67,67	276.227	1944.0	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	255	.	20	.	0.984313725490196	.	A:0:C:251:G:0:T:3:N:0:O:1	.	123,126,128,129	60.786	1293.9	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	28174	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	2,43,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28319	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:106:C:0:G:3:T:0:N:0:O:1	.	3,57,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	2,64,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,32,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	2,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	1,3,1,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,24,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:42:G:0:T:1:N:0:O:1	.	0,27,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:82:T:0:N:0:O:1	.	1,9,2,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	103	.	20	.	0.9902912621359223	.	A:0:C:0:G:102:T:0:N:0:O:1	.	26,27,76,76	324.391	1507.6	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	28927	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:90:N:0:O:3	.	0,37,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:133:G:0:T:3:N:0:O:1	.	0,111,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29054	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	0,18,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:1:G:0:T:0:N:0:O:0	.	1,3,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:4:C:0:G:65:T:0:N:0:O:1	.	4,5,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:91:G:0:T:3:N:0:O:9	.	3,38,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:83:C:0:G:3:T:0:N:0:O:0	.	3,30,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:83:N:0:O:2	.	1,61,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	97	.	20	.	0.8041237113402062	.	A:2:C:0:G:78:T:0:N:0:O:17	.	23,42,55,55	399.943	954.2	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	29741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:110:G:0:T:4:N:0:O:0	.	1,51,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00087	artic-pipeline	NB09	MN908947.3	29754	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:0:C:124:G:1:T:4:N:0:O:15	.	3,78,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	300	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00087	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	144	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	65	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,6,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	78	T	G	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:1:T:33:N:0:O:3	.	0,5,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	95	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:43:N:0:O:1	.	0,3,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	128	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,5,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:31:G:0:T:1:N:0:O:1	.	0,9,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,8,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.06666666666666667	.	A:0:C:28:G:0:T:2:N:0:O:0	.	0,7,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:34:T:0:N:0:O:1	.	1,2,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	234	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	0,7,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	46	.	20	.	0.9130434782608695	.	A:0:C:1:G:1:T:42:N:0:O:2	.	6,7,36,39	140.0	1168.5	.	.	.	.	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,5,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:0:C:41:G:0:T:2:N:0:O:3	.	0,8,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	700	A	G	A	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.02100840336134454	.	A:228:C:0:G:5:T:0:N:0:O:5	.	5,104,0,134	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	942	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,31,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1002	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.02717391304347826	.	A:178:C:0:G:5:T:0:N:0:O:1	.	1,84,4,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9852941176470589	.	A:0:C:1:G:0:T:134:N:0:O:1	.	75,77,59,59	350.0	1435.4	.	.	.	.	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	1068	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,31,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:48:G:0:T:2:N:0:O:2	.	2,38,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	1222	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:92:N:0:O:2	.	0,82,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:0:C:104:G:0:T:6:N:0:O:2	.	0,44,6,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.032520325203252036	.	A:0:C:232:G:0:T:8:N:0:O:6	.	0,92,8,154	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.015625	.	A:2:C:93:G:0:T:0:N:0:O:33	.	0,58,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:90:T:0:N:0:O:2	.	1,41,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:104:N:0:O:4	.	0,46,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:4:G:0:T:111:N:0:O:1	.	0,48,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:108:T:0:N:0:O:0	.	0,28,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:108:C:0:G:4:T:0:N:0:O:0	.	0,40,4,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1963	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:114:N:0:O:1	.	0,61,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	1998	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:1:G:2:T:94:N:0:O:2	.	0,48,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:79:G:0:T:2:N:0:O:0	.	0,50,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	1,48,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:85:G:0:T:2:N:0:O:3	.	1,59,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:100:T:0:N:0:O:2	.	4,23,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	2300	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:84:N:0:O:1	.	0,44,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:76:T:0:N:0:O:3	.	0,26,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	0,23,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:137:C:4:G:0:T:0:N:0:O:1	.	4,80,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.046153846153846156	.	A:124:C:0:G:6:T:0:N:0:O:0	.	6,58,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:75:C:2:G:0:T:0:N:0:O:0	.	0,23,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:108:G:0:T:3:N:0:O:13	.	1,40,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	125	.	20	.	0.696	.	A:0:C:0:G:0:T:87:N:0:O:38	.	44,82,43,43	273.703	1403.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:74:T:2:N:0:O:15	.	0,55,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	3159	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:59:G:0:T:2:N:0:O:1	.	0,47,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:2:T:0:N:0:O:1	.	2,6,0,93	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:93:C:0:G:2:T:0:N:0:O:3	.	2,26,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:1:T:2:N:0:O:0	.	0,43,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:77:G:0:T:2:N:0:O:0	.	1,37,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:66:G:0:T:3:N:0:O:1	.	0,28,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,23,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.09195402298850575	.	A:0:C:79:G:0:T:8:N:0:O:0	.	1,56,7,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:80:N:0:O:17	.	0,46,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:0:G:76:T:2:N:0:O:5	.	1,33,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:71:T:0:N:0:O:1	.	0,33,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:56:G:0:T:2:N:0:O:0	.	0,50,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.021551724137931036	.	A:5:C:0:G:219:T:0:N:0:O:8	.	5,42,0,190	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:0:T:2:N:0:O:2	.	0,41,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:2:G:1:T:40:N:0:O:0	.	1,41,1,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.05392156862745098	.	A:0:C:0:G:181:T:11:N:0:O:12	.	1,149,10,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.028409090909090908	.	A:0:C:0:G:149:T:5:N:0:O:22	.	1,155,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.023622047244094488	.	A:6:C:0:G:246:T:1:N:0:O:1	.	0,118,6,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	247	.	20	.	0.020242914979757085	.	A:0:C:223:G:0:T:5:N:0:O:19	.	0,130,5,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:3:G:0:T:128:N:0:O:8	.	0,96,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	5097	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:92:C:0:G:0:T:3:N:0:O:1	.	0,80,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:0:G:85:T:5:N:0:O:3	.	5,48,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	5259	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,57,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:0:C:61:G:0:T:4:N:0:O:0	.	0,54,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:83:N:0:O:1	.	2,36,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.07	.	A:0:C:93:G:0:T:7:N:0:O:0	.	0,74,7,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,10,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	0,28,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	1,11,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.1111111111111111	.	A:0:C:0:G:5:T:35:N:0:O:5	.	1,24,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:40:N:0:O:2	.	0,24,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6685	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:0:G:1:T:42:N:0:O:0	.	1,15,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	1,18,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6696	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:39:G:0:T:1:N:0:O:11	.	1,36,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	6714	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:0:T:49:N:0:O:0	.	1,24,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:1:T:1:N:0:O:0	.	1,20,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6722	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,15,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:32:G:0:T:1:N:0:O:1	.	0,21,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6729	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:0:T:1:N:0:O:0	.	0,22,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:42:N:0:O:1	.	0,23,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:68:C:0:G:3:T:0:N:0:O:5	.	3,33,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,40,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6835	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:0:T:85:N:0:O:4	.	2,39,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:31:T:0:N:0:O:0	.	1,14,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6860	G	C	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:32:T:0:N:0:O:0	.	0,18,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.05405405405405406	.	A:35:C:0:G:2:T:0:N:0:O:0	.	2,21,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,16,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	6998	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:42:N:0:O:1	.	0,32,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,29,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7010	G	T	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:0:G:41:T:1:N:0:O:0	.	1,26,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:0:C:63:G:0:T:3:N:0:O:2	.	1,42,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:0:G:67:T:0:N:0:O:1	.	3,15,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	7598	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:87:N:0:O:4	.	0,47,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7669	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:131:C:0:G:3:T:0:N:0:O:1	.	3,67,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7670	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:103:T:0:N:0:O:1	.	3,64,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:25:G:1:T:1:N:0:O:4	.	0,23,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7675	G	C	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:36:T:0:N:0:O:0	.	0,15,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7690	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,14,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:0:T:1:N:0:O:0	.	1,14,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7739	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	1,14,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7740	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:0:T:1:N:0:O:0	.	1,15,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7793	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.017241379310344827	.	A:0:C:48:G:0:T:1:N:0:O:9	.	1,26,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7797	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	0,5,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,16,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7857	A	C	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:1:G:0:T:0:N:0:O:0	.	0,14,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7870	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:41:C:0:G:0:T:1:N:0:O:1	.	1,17,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7890	T	A	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:0:T:29:N:0:O:0	.	1,14,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7906	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	0,18,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	0,16,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7924	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:40:N:0:O:1	.	0,15,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7927	A	C	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:1:G:0:T:0:N:0:O:0	.	1,17,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	7968	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:29:G:0:T:1:N:0:O:0	.	0,15,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:98:C:3:G:0:T:0:N:0:O:1	.	0,55,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:60:C:0:G:2:T:0:N:0:O:1	.	2,27,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:70:G:0:T:2:N:0:O:0	.	1,6,1,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:72:T:0:N:0:O:0	.	4,8,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:5:C:0:G:0:T:91:N:0:O:7	.	4,46,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:6:C:0:G:92:T:0:N:0:O:0	.	6,31,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,50,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:106:T:3:N:0:O:0	.	0,52,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9429	T	A	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:0:T:105:N:0:O:0	.	0,55,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9430	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:93:G:0:T:4:N:0:O:5	.	0,50,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	9510	C	T	T	15	new position with no illumina data	Check	False	True	True	259	.	20	.	0.8996138996138996	.	A:0:C:0:G:0:T:233:N:0:O:26	.	109,135,124,124	416.227	893.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9587	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:82:C:0:G:0:T:2:N:0:O:4	.	2,31,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.017094017094017096	.	A:0:C:79:G:0:T:2:N:0:O:36	.	2,108,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:2:G:0:T:41:N:0:O:0	.	2,42,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:84:G:0:T:2:N:0:O:12	.	0,64,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	9953	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:0:G:98:T:4:N:0:O:0	.	4,52,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	10129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:0:C:4:G:0:T:183:N:0:O:7	.	0,120,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.030612244897959183	.	A:6:C:0:G:189:T:0:N:0:O:1	.	6,68,0,128	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	10449	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	2,37,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:94:C:0:G:4:T:0:N:0:O:0	.	4,34,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:90:T:2:N:0:O:1	.	2,45,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.05454545454545454	.	A:0:C:103:G:0:T:6:N:0:O:1	.	0,62,6,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:94:G:0:T:0:N:0:O:8	.	2,51,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:86:G:0:T:2:N:0:O:4	.	0,54,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:89:N:0:O:0	.	1,34,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	11297	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:0:T:2:N:0:O:0	.	0,52,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	11466	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,57,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	11919	C	T	T	17	accept high frequency variant	Pass	False	True	True	259	.	20	.	0.9575289575289575	.	A:0:C:0:G:0:T:248:N:0:O:11	.	76,87,172,172	490.0	1472.0	.	.	.	.	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	11960	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,34,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.05263157894736842	.	A:54:C:0:G:3:T:0:N:0:O:0	.	0,26,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:61:G:0:T:2:N:0:O:15	.	0,39,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	12264	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	1,50,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:71:T:0:N:0:O:16	.	0,71,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:92:T:0:N:0:O:2	.	3,25,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:0:C:69:G:0:T:4:N:0:O:1	.	0,55,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	12856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:2:G:0:T:97:N:0:O:10	.	0,59,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:89:G:0:T:3:N:0:O:0	.	0,54,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13438	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:95:N:0:O:5	.	1,50,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13469	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:1:C:0:G:97:T:2:N:0:O:0	.	1,42,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.09523809523809523	.	A:1:C:73:G:0:T:8:N:0:O:2	.	0,72,8,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:87:T:0:N:0:O:5	.	2,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:101:C:0:G:3:T:0:N:0:O:2	.	3,43,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:89:G:0:T:0:N:0:O:5	.	1,38,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:95:T:0:N:0:O:4	.	2,30,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	3,24,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	87	.	20	.	0.9540229885057471	.	A:0:C:2:G:0:T:83:N:0:O:2	.	49,53,34,34	318.049	1209.1	.	.	.	.	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:92:G:0:T:0:N:0:O:1	.	0,62,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	14535	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:127:C:0:G:3:T:0:N:0:O:0	.	3,66,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:90:T:0:N:0:O:2	.	2,35,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:73:N:0:O:1	.	0,66,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15145	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	1,47,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:86:G:0:T:4:N:0:O:0	.	0,55,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,31,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15616	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:123:C:0:G:3:T:0:N:0:O:0	.	3,63,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15617	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:135:T:0:N:0:O:3	.	3,73,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:3:G:0:T:138:N:0:O:0	.	0,94,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15758	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:79:C:2:G:0:T:0:N:0:O:3	.	2,56,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.13636363636363635	.	A:0:C:38:G:0:T:6:N:0:O:0	.	0,19,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	16000	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:51:G:0:T:2:N:0:O:4	.	1,10,1,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,56,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:89:G:0:T:3:N:0:O:2	.	0,56,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	16241	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:110:N:0:O:0	.	0,66,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:0:G:120:T:4:N:0:O:2	.	4,57,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:88:T:0:N:0:O:1	.	4,18,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	16834	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:0:T:48:N:0:O:0	.	1,43,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:0:G:4:T:89:N:0:O:1	.	0,44,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:116:T:0:N:0:O:26	.	0,57,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.03468208092485549	.	A:6:C:0:G:161:T:0:N:0:O:6	.	6,33,0,140	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,81,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:61:C:0:G:3:T:0:N:0:O:0	.	3,15,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:4:C:0:G:0:T:61:N:0:O:3	.	4,19,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17337	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:111:C:4:G:0:T:0:N:0:O:0	.	4,60,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:0:G:100:T:0:N:0:O:0	.	4,32,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17571	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,53,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,57,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:95:G:0:T:3:N:0:O:2	.	0,43,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:5:C:0:G:105:T:0:N:0:O:0	.	0,66,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17934	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,67,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,38,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:81:C:0:G:2:T:0:N:0:O:5	.	2,29,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:65:T:0:N:0:O:0	.	2,15,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18080	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:3:G:0:T:124:N:0:O:1	.	0,58,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.04201680672268908	.	A:0:C:114:G:0:T:5:N:0:O:0	.	0,76,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:3:T:94:N:0:O:0	.	3,26,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.04285714285714286	.	A:6:C:0:G:129:T:0:N:0:O:5	.	6,54,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18470	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:138:C:0:G:3:T:0:N:0:O:3	.	3,58,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:65:T:0:N:0:O:1	.	3,14,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18978	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:142:C:0:G:3:T:0:N:0:O:0	.	3,47,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	18994	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:115:T:0:N:0:O:6	.	3,48,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	19085	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:133:C:0:G:3:T:0:N:0:O:0	.	3,64,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:5:C:0:G:116:T:0:N:0:O:0	.	5,23,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	19342	G	T	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:0:G:18:T:1:N:0:O:0	.	1,6,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	19480	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:20:T:0:N:0:O:1	.	1,6,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	19484	C	T	N	1	near depth threshold	Alarm	False	False	False	13	.	20	.	0.15384615384615385	.	A:0:C:11:G:0:T:2:N:0:O:0	.	0,6,2,7	.	35.2	.	depth near threshold	.	mismatch(n)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	0,44,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:0:G:2:T:62:N:0:O:0	.	0,27,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,51,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:3:T:105:N:0:O:0	.	3,49,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:4:C:0:G:117:T:0:N:0:O:6	.	4,64,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:64:T:0:N:0:O:2	.	3,45,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20495	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:92:T:2:N:0:O:1	.	1,60,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:113:G:0:T:3:N:0:O:4	.	0,96,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:72:T:0:N:0:O:0	.	2,31,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:76:G:0:T:4:N:0:O:12	.	4,49,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:92:C:0:G:3:T:0:N:0:O:2	.	3,20,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,44,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:2:G:0:T:53:N:0:O:0	.	0,4,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.08602150537634409	.	A:0:C:0:G:82:T:8:N:0:O:3	.	0,64,8,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:87:G:0:T:3:N:0:O:2	.	0,59,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.014925373134328358	.	A:1:C:1:G:0:T:46:N:0:O:19	.	0,51,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:78:T:0:N:0:O:1	.	2,16,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21519	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:2:T:0:N:0:O:2	.	2,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:0:T:3:N:0:O:0	.	3,41,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:99:G:0:T:3:N:0:O:4	.	3,36,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,45,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.03225806451612903	.	A:150:C:0:G:0:T:5:N:0:O:0	.	4,84,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:0:G:115:T:4:N:0:O:1	.	4,66,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23025	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:0:G:131:T:3:N:0:O:2	.	3,70,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:3:G:0:T:130:N:0:O:0	.	0,81,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	123	.	20	.	0.967479674796748	.	A:0:C:0:G:119:T:0:N:0:O:4	.	67,71,52,52	210.0	1553.9	.	.	.	.	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,29,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:76:T:0:N:0:O:4	.	2,17,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.17582417582417584	.	A:0:C:75:G:0:T:16:N:0:O:0	.	0,60,16,31	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,60,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23912	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:122:G:0:T:0:N:0:O:6	.	2,63,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:0:T:74:N:0:O:1	.	3,13,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	3,15,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,64,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:52:G:0:T:3:N:0:O:7	.	0,56,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:82:T:0:N:0:O:2	.	3,16,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:89:T:0:N:0:O:11	.	3,24,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,56,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:115:T:0:N:0:O:3	.	3,58,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:95:C:3:G:0:T:0:N:0:O:1	.	3,59,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:86:C:0:G:4:T:0:N:0:O:1	.	4,45,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:85:G:0:T:2:N:0:O:4	.	1,46,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,66,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:40:N:0:O:2	.	1,37,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	25160	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:129:G:0:T:3:N:0:O:0	.	0,80,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	121	.	20	.	0.9834710743801653	.	A:0:C:0:G:2:T:119:N:0:O:0	.	48,48,71,73	350.0	2086.1	.	.	.	.	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	1,9,1,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:84:G:0:T:0:N:0:O:46	.	2,41,1,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.109375	.	A:52:C:7:G:0:T:0:N:0:O:5	.	0,37,7,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25809	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,48,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:98:G:0:T:4:N:0:O:1	.	0,65,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:81:N:0:O:1	.	0,46,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:2:T:0:N:0:O:1	.	2,16,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	1,43,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,21,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	25986	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:67:C:0:G:2:T:0:N:0:O:0	.	1,23,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:90:N:0:O:1	.	0,49,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:95:G:1:T:4:N:0:O:1	.	0,61,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,50,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,35,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,27,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.02197802197802198	.	A:0:C:177:G:0:T:4:N:0:O:1	.	0,143,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:3:T:0:N:0:O:1	.	3,62,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:88:C:0:G:0:T:6:N:0:O:4	.	6,37,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.0963855421686747	.	A:8:C:0:G:74:T:0:N:0:O:1	.	8,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:97:G:0:T:3:N:0:O:1	.	0,83,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26922	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:2:T:0:N:0:O:1	.	1,65,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:91:C:1:G:2:T:0:N:0:O:6	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:89:G:0:T:4:N:0:O:1	.	0,64,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	27130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:3:T:0:N:0:O:0	.	3,53,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:91:G:0:T:2:N:0:O:4	.	0,77,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:88:G:0:T:0:N:0:O:2	.	2,58,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	27741	C	A	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0189873417721519	.	A:3:C:117:G:0:T:0:N:0:O:38	.	0,107,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:2:G:0:T:0:N:0:O:1	.	2,45,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	1,12,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:92:G:0:T:0:N:0:O:10	.	2,67,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:86:C:0:G:0:T:2:N:0:O:5	.	2,37,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	28439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:0:C:178:G:0:T:4:N:0:O:2	.	0,141,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:0:G:79:T:2:N:0:O:1	.	0,27,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:0:G:3:T:118:N:0:O:27	.	0,77,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:75:G:0:T:2:N:0:O:3	.	0,29,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:72:G:0:T:2:N:0:O:0	.	0,25,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00089	artic-pipeline	NB11	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:126:G:0:T:3:N:0:O:0	.	0,102,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:1:G:0:T:0:N:0:O:0	.	0,5,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	29204	G	C	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:95:T:0:N:0:O:0	.	2,50,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	29209	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,54,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	29362	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	2,44,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:46:C:0:G:1:T:0:N:0:O:1	.	0,3,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:71:T:0:N:0:O:2	.	2,11,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00089	artic-pipeline	NB11	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,5,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,3,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:24:G:0:T:1:N:0:O:1	.	0,6,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	0,3,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	209	T	G	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:1:T:32:N:0:O:0	.	0,5,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	34	.	20	.	0.9411764705882353	.	A:0:C:0:G:0:T:32:N:0:O:2	.	4,6,28,28	139.237	1255.3	.	.	.	.	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	283	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,6,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:35:N:0:O:0	.	1,3,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	1,3,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	324	T	G	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:1:T:32:N:0:O:0	.	0,5,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	337	C	G	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:1:T:0:N:0:O:0	.	0,6,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	439	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:51:C:0:G:2:T:0:N:0:O:0	.	0,3,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:66:N:0:O:6	.	2,16,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1002	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:140:C:0:G:3:T:0:N:0:O:0	.	0,63,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1026	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:80:G:0:T:2:N:0:O:15	.	0,84,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	1.0	.	A:0:C:0:G:0:T:133:N:0:O:0	.	67,67,66,66	280.0	1393.1	.	.	.	.	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:78:T:0:N:0:O:2	.	2,16,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,42,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:2:G:0:T:94:N:0:O:0	.	1,47,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	222	.	20	.	0.02252252252252252	.	A:0:C:213:G:0:T:5:N:0:O:4	.	0,99,5,123	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:4:C:90:G:0:T:0:N:0:O:36	.	0,72,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:77:C:0:G:3:T:0:N:0:O:3	.	2,12,1,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	0,0,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,63,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:92:T:0:N:0:O:10	.	2,41,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:6:C:0:G:90:T:0:N:0:O:0	.	6,33,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:0:N:0:O:1	.	0,16,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	0,9,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,68,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	127	.	20	.	0.7244094488188977	.	A:0:C:0:G:0:T:92:N:0:O:35	.	44,79,48,48	62.247	1413.5	.	.	.	.	mixed position	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:0:C:0:G:63:T:4:N:0:O:18	.	0,56,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,60,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:70:G:0:T:4:N:0:O:1	.	0,36,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	3413	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:43:C:0:G:1:T:0:N:0:O:2	.	1,18,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	0,0,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3622	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.04285714285714286	.	A:0:C:134:G:0:T:6:N:0:O:0	.	3,77,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3623	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:133:G:0:T:3:N:0:O:0	.	3,79,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3624	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:0:C:126:G:1:T:5:N:0:O:6	.	2,79,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:4:C:0:G:82:T:0:N:0:O:3	.	0,56,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:107:T:0:N:0:O:3	.	3,52,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	4296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:137:G:0:T:3:N:0:O:0	.	0,44,3,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	4321	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:71:G:0:T:2:N:0:O:11	.	0,48,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.04060913705583756	.	A:0:C:0:G:179:T:8:N:0:O:10	.	0,146,8,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	4487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	1,37,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:1:C:0:G:3:T:135:N:0:O:14	.	0,86,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5243	C	G	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:117:G:3:T:0:N:0:O:5	.	3,78,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:97:T:1:N:0:O:0	.	3,33,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:99:C:3:G:0:T:0:N:0:O:0	.	3,48,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5532	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:130:T:0:N:0:O:1	.	1,88,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:1:C:87:G:0:T:4:N:0:O:1	.	0,56,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:0:C:64:G:0:T:5:N:0:O:1	.	0,58,5,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:73:N:0:O:0	.	0,49,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:86:T:0:N:0:O:2	.	2,18,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	5813	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:93:T:0:N:0:O:3	.	3,32,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.11363636363636363	.	A:1:C:77:G:0:T:10:N:0:O:0	.	0,64,10,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:109:G:0:T:3:N:0:O:1	.	3,60,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:91:G:0:T:3:N:0:O:2	.	0,58,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:1:C:0:G:79:T:2:N:0:O:1	.	0,23,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:94:N:0:O:3	.	0,65,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	1,54,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:65:G:0:T:2:N:0:O:0	.	1,33,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.025380710659898477	.	A:187:C:0:G:5:T:0:N:0:O:5	.	5,83,0,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:0:C:177:G:0:T:5:N:0:O:7	.	0,135,5,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,25,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:88:N:0:O:1	.	2,35,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,76,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	7299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.045454545454545456	.	A:0:C:125:G:0:T:6:N:0:O:1	.	5,90,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	7459	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:107:T:0:N:0:O:2	.	3,70,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	7598	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:93:N:0:O:3	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:90:G:0:T:3:N:0:O:5	.	0,66,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:0:T:2:N:0:O:0	.	2,37,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,37,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:102:N:0:O:0	.	0,57,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	8118	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:136:G:0:T:3:N:0:O:2	.	0,56,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	8470	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:89:T:0:N:0:O:2	.	2,21,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:106:G:0:T:3:N:0:O:1	.	1,74,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	8794	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:0:T:96:N:0:O:3	.	0,58,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:72:N:0:O:0	.	2,36,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:0:T:79:N:0:O:0	.	2,38,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:0:T:95:N:0:O:7	.	1,41,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,43,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.05555555555555555	.	A:6:C:0:G:102:T:0:N:0:O:0	.	6,39,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	9585	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:0:T:107:N:0:O:2	.	3,70,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	9809	A	T	A	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:177:C:0:G:0:T:4:N:0:O:5	.	4,79,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:69:T:0:N:0:O:0	.	2,17,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:79:G:0:T:2:N:0:O:11	.	2,28,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	10148	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,46,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:73:T:0:N:0:O:1	.	2,13,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:98:G:0:T:4:N:0:O:1	.	0,61,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	10475	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,63,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:77:T:0:N:0:O:0	.	3,20,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:3:G:0:T:76:N:0:O:5	.	0,54,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:0:C:85:G:0:T:7:N:0:O:0	.	0,60,7,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	11074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.014084507042253521	.	A:0:C:74:G:0:T:2:N:0:O:66	.	1,137,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	11107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:1:C:0:G:2:T:97:N:0:O:1	.	0,62,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	2,49,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:99:C:0:G:0:T:4:N:0:O:2	.	4,72,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	11513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,71,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:83:G:0:T:4:N:0:O:3	.	0,72,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	11812	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:94:G:0:T:0:N:0:O:9	.	2,56,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:2:T:0:N:0:O:0	.	0,46,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	12049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:1:C:120:G:0:T:3:N:0:O:4	.	2,61,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:87:T:0:N:0:O:3	.	3,18,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	12437	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	2,42,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	12658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:2:T:0:N:0:O:2	.	2,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:80:G:0:T:4:N:0:O:0	.	0,69,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	12749	G	T	G	16	ignore low frequency variant	Pass	False	False	True	251	.	20	.	0.0199203187250996	.	A:0:C:0:G:245:T:5:N:0:O:1	.	5,111,0,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	0,25,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:104:C:0:G:4:T:0:N:0:O:2	.	4,29,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:112:G:0:T:3:N:0:O:5	.	0,77,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.10975609756097561	.	A:0:C:73:G:0:T:9:N:0:O:0	.	0,70,9,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:94:T:0:N:0:O:14	.	3,52,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,33,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:98:C:0:G:4:T:0:N:0:O:0	.	4,34,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.05172413793103448	.	A:6:C:101:G:0:T:0:N:0:O:9	.	5,57,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:121:T:1:N:0:O:0	.	3,48,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:1:T:0:N:0:O:1	.	0,3,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,33,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:0:G:110:T:3:N:0:O:1	.	3,42,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:93:N:0:O:1	.	0,64,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:5:C:0:G:96:T:0:N:0:O:0	.	5,41,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14392	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,63,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	86	.	20	.	0.9767441860465116	.	A:0:C:0:G:0:T:84:N:0:O:2	.	39,41,45,45	452.256	1213.8	.	.	.	.	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:87:G:0:T:0:N:0:O:1	.	0,54,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,56,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,19,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:94:T:0:N:0:O:1	.	3,48,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:104:N:0:O:4	.	0,68,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:91:C:0:G:4:T:0:N:0:O:0	.	4,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:110:T:0:N:0:O:0	.	4,41,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	15346	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:94:G:0:T:2:N:0:O:3	.	0,52,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:89:G:0:T:3:N:0:O:1	.	0,59,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,62,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	15588	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	0,81,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.10714285714285714	.	A:0:C:50:G:0:T:6:N:0:O:0	.	0,23,6,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:105:G:0:T:3:N:0:O:1	.	0,58,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	0,62,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:0:C:91:G:0:T:6:N:0:O:1	.	0,71,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:0:T:2:N:0:O:0	.	2,39,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:2:T:0:N:0:O:1	.	2,43,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	16427	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:2:T:1:N:0:O:2	.	2,47,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	16428	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:81:G:0:T:2:N:0:O:7	.	1,36,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:0:G:103:T:4:N:0:O:0	.	4,47,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:86:T:0:N:0:O:1	.	4,18,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:93:G:1:T:2:N:0:O:6	.	0,64,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	0,71,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:77:C:0:G:2:T:0:N:0:O:1	.	2,9,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:0:T:72:N:0:O:3	.	3,11,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:67:G:0:T:2:N:0:O:1	.	0,52,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:1:C:3:G:0:T:85:N:0:O:0	.	0,56,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:82:G:0:T:4:N:0:O:2	.	0,43,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.027777777777777776	.	A:0:C:175:G:0:T:5:N:0:O:0	.	1,96,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:124:G:0:T:3:N:0:O:5	.	0,89,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:63:G:0:T:3:N:0:O:0	.	0,42,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:87:C:0:G:1:T:4:N:0:O:10	.	0,45,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.07692307692307693	.	A:8:C:0:G:96:T:0:N:0:O:0	.	0,57,8,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17875	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:90:C:2:G:0:T:0:N:0:O:9	.	2,38,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:94:C:0:G:2:T:0:N:0:O:4	.	2,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:75:T:0:N:0:O:0	.	3,17,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.02512562814070352	.	A:5:C:0:G:190:T:0:N:0:O:4	.	5,52,0,147	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:87:N:0:O:0	.	2,27,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:117:T:3:N:0:O:2	.	0,67,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	18562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:128:C:0:G:0:T:3:N:0:O:0	.	0,66,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:93:N:0:O:0	.	1,35,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:104:T:0:N:0:O:0	.	3,43,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.043478260869565216	.	A:6:C:0:G:129:T:0:N:0:O:3	.	6,28,0,110	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19265	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:141:N:0:O:1	.	0,83,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19281	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:0:G:1:T:34:N:0:O:0	.	0,23,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19326	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,20,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19344	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	1,21,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19389	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,18,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19453	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,20,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19455	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	1,19,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19457	G	T	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:0:G:29:T:1:N:0:O:0	.	1,20,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19477	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:20:T:0:N:0:O:0	.	1,8,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19484	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.09523809523809523	.	A:0:C:19:G:0:T:2:N:0:O:0	.	0,18,2,3	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,19,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:28:N:0:O:1	.	1,16,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19562	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:28:N:0:O:3	.	1,18,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19621	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:120:C:0:G:3:T:0:N:0:O:2	.	3,57,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:0:G:2:T:66:N:0:O:3	.	0,28,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	20029	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:119:T:0:N:0:O:6	.	3,42,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,41,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	20410	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:0:G:114:T:4:N:0:O:1	.	4,51,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	20413	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:1:T:91:N:0:O:1	.	2,23,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.02926829268292683	.	A:193:C:0:G:6:T:0:N:0:O:6	.	6,84,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:0:C:1:G:2:T:56:N:0:O:0	.	1,7,1,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:0:C:0:G:71:T:6:N:0:O:13	.	0,68,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:0:T:43:N:0:O:27	.	0,56,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:83:G:0:T:3:N:0:O:1	.	0,62,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:90:G:0:T:4:N:0:O:0	.	0,59,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:5:C:0:G:81:T:0:N:0:O:2	.	5,18,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:2:G:0:T:0:N:0:O:1	.	2,49,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21654	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:87:G:0:T:2:N:0:O:4	.	0,72,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:81:G:0:T:3:N:0:O:2	.	1,29,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:4:T:100:N:0:O:1	.	4,28,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:104:T:3:N:0:O:0	.	0,50,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:0:G:139:T:4:N:0:O:2	.	2,70,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	22972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:121:N:0:O:1	.	0,81,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:0:C:120:G:0:T:4:N:0:O:11	.	0,111,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	23129	A	G	A	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.023952095808383235	.	A:163:C:0:G:4:T:0:N:0:O:0	.	4,72,0,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,57,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.917910447761194	.	A:0:C:0:G:123:T:0:N:0:O:11	.	60,71,63,63	140.0	1493.6	.	.	.	.	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:74:T:0:N:0:O:4	.	3,17,1,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:87:C:0:G:2:T:0:N:0:O:2	.	2,48,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.12871287128712872	.	A:0:C:88:G:0:T:13:N:0:O:0	.	0,74,13,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:0:T:79:N:0:O:0	.	2,19,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:93:T:0:N:0:O:0	.	4,14,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:78:T:0:N:0:O:1	.	2,20,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:89:T:0:N:0:O:5	.	2,29,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:98:T:0:N:0:O:1	.	3,38,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:2:G:0:T:96:N:0:O:6	.	0,55,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,52,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:78:G:0:T:2:N:0:O:5	.	0,63,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	2,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:1:C:0:G:3:T:92:N:0:O:0	.	0,65,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25162	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:75:G:0:T:2:N:0:O:3	.	0,40,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25424	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,59,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:1:G:3:T:91:N:0:O:3	.	3,46,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	113	.	20	.	1.0	.	A:0:C:0:G:0:T:113:N:0:O:0	.	48,48,65,65	279.237	1947.2	.	.	.	.	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	25591	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	0,8,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:41:C:0:G:1:T:0:N:0:O:1	.	0,0,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:71:G:0:T:2:N:0:O:8	.	1,62,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25730	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:120:C:0:G:3:T:0:N:0:O:2	.	2,70,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:86:G:0:T:2:N:0:O:8	.	1,56,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:72:G:0:T:0:N:0:O:33	.	3,39,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:48:C:3:G:0:T:0:N:0:O:1	.	1,33,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25809	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:0:G:2:T:0:N:0:O:2	.	2,50,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,74,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,41,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:94:C:0:G:3:T:0:N:0:O:1	.	3,38,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:83:G:0:T:3:N:0:O:5	.	0,50,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	25888	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,61,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:70:T:0:N:0:O:1	.	3,30,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.035897435897435895	.	A:1:C:187:G:0:T:7:N:0:O:0	.	0,169,7,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.025974025974025976	.	A:0:C:6:G:0:T:225:N:0:O:0	.	0,177,6,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26670	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:91:C:0:G:2:T:0:N:0:O:4	.	0,66,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:83:C:0:G:3:T:0:N:0:O:4	.	1,67,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:93:C:0:G:0:T:3:N:0:O:4	.	3,29,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:77:T:0:N:0:O:0	.	5,13,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,79,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:109:G:0:T:4:N:0:O:3	.	0,76,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:85:C:0:G:2:T:0:N:0:O:6	.	2,34,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:69:G:0:T:4:N:0:O:0	.	0,52,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	27109	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:0:G:2:T:0:N:0:O:0	.	2,46,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,45,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	27514	G	C	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:96:T:0:N:0:O:0	.	2,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:68:T:0:N:0:O:3	.	2,13,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,42,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:91:C:0:G:3:T:0:N:0:O:1	.	3,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28268	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,51,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:67:G:0:T:2:N:0:O:0	.	0,52,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28375	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:94:T:0:N:0:O:3	.	2,50,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:84:C:0:G:0:T:2:N:0:O:5	.	2,31,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:72:G:0:T:2:N:0:O:3	.	2,41,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:63:G:0:T:2:N:0:O:7	.	2,42,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:1:N:0:O:0	.	2,27,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28637	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	2,43,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:92:N:0:O:1	.	0,58,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28775	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:63:G:0:T:2:N:0:O:2	.	0,22,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:67:G:0:T:3:N:0:O:8	.	0,32,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:0:C:54:G:0:T:3:N:0:O:1	.	0,19,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	28867	T	C	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:1:G:0:T:44:N:0:O:8	.	0,31,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:5:C:0:G:107:T:0:N:0:O:1	.	4,8,1,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:133:G:0:T:4:N:0:O:1	.	0,101,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	29060	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:0:T:2:N:0:O:1	.	2,27,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:2:C:0:G:98:T:0:N:0:O:13	.	2,23,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00090	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00090	artic-pipeline	NB12	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	13	.	20	.	0.9230769230769231	.	A:0:C:0:G:0:T:12:N:0:O:1	.	1,2,11,11	271.484	1210.3	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:4:G:0:T:110:N:0:O:1	.	0,65,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:0:T:84:N:0:O:3	.	3,23,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:91:N:0:O:3	.	3,26,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	0,31,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:0:T:2:N:0:O:0	.	2,13,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	2,28,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	145	.	20	.	1.0	.	A:0:C:0:G:0:T:145:N:0:O:0	.	93,93,52,52	70.0	1535.4	.	.	.	.	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:82:G:1:T:3:N:0:O:2	.	3,62,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:132:C:0:G:0:T:4:N:0:O:0	.	4,46,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:123:G:4:T:0:N:0:O:0	.	4,47,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	0,42,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:113:T:3:N:0:O:2	.	1,46,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:100:N:0:O:3	.	0,44,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.06329113924050633	.	A:73:C:0:G:5:T:0:N:0:O:1	.	3,9,2,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.03597122302158273	.	A:5:C:0:G:118:T:0:N:0:O:16	.	3,55,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,2,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	1861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:90:N:0:O:2	.	0,57,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:113:T:0:N:0:O:0	.	3,50,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.09243697478991597	.	A:11:C:0:G:107:T:0:N:0:O:1	.	11,43,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	2256	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:1:T:80:N:0:O:0	.	2,8,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	2335	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:0:G:3:T:120:N:0:O:4	.	0,50,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:86:T:0:N:0:O:3	.	0,21,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	2509	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:86:G:0:T:0:N:0:O:2	.	0,35,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:145:C:4:G:0:T:0:N:0:O:0	.	4,67,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:0:T:2:N:0:O:3	.	0,92,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	130	.	20	.	0.6692307692307692	.	A:0:C:0:G:0:T:87:N:0:O:43	.	43,86,44,44	192.396	1387.5	.	.	.	.	mixed position	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	3091	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:116:T:3:N:0:O:2	.	0,44,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3133	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:107:C:3:G:0:T:0:N:0:O:3	.	0,46,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:0:C:5:G:0:T:102:N:0:O:5	.	0,56,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:106:C:0:G:3:T:0:N:0:O:2	.	3,45,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	0,78,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,58,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:42:C:0:G:0:T:2:N:0:O:2	.	2,26,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	0,0,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	87	.	20	.	0.034482758620689655	.	A:0:C:84:G:0:T:3:N:0:O:0	.	0,63,3,24	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3747	C	T	N	2	allele in negative control	Alarm	False	False	False	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	1,72,1,20	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:78:N:0:O:21	.	0,35,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:0:G:79:T:3:N:0:O:5	.	1,36,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:64:T:0:N:0:O:0	.	0,33,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:60:G:0:T:2:N:0:O:0	.	0,50,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:3:G:0:T:96:N:0:O:0	.	0,51,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	3981	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	0,42,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	4010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:105:G:0:T:5:N:0:O:0	.	0,47,5,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:34:G:0:T:1:N:0:O:2	.	0,25,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.02512562814070352	.	A:0:C:0:G:186:T:5:N:0:O:8	.	0,140,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.02654867256637168	.	A:6:C:1:G:219:T:0:N:0:O:0	.	0,107,6,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.0297029702970297	.	A:1:C:184:G:0:T:6:N:0:O:11	.	0,110,6,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.018633540372670808	.	A:3:C:0:G:0:T:141:N:0:O:17	.	2,68,1,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:1:C:2:G:0:T:95:N:0:O:1	.	0,64,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,24,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:81:T:0:N:0:O:0	.	3,39,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:86:C:0:G:2:T:0:N:0:O:6	.	0,31,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.08571428571428572	.	A:0:C:63:G:0:T:6:N:0:O:1	.	0,59,6,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:72:N:0:O:0	.	0,52,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	3,60,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5852	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:105:C:1:G:0:T:3:N:0:O:2	.	3,63,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5935	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:81:C:0:G:0:T:2:N:0:O:5	.	2,20,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	2,44,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,67,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:99:G:0:T:3:N:0:O:3	.	0,70,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:74:T:0:N:0:O:2	.	4,22,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	2,51,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:71:G:0:T:2:N:0:O:1	.	2,38,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:91:N:0:O:7	.	0,52,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:100:T:0:N:0:O:1	.	3,37,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:190:C:0:G:4:T:1:N:0:O:2	.	4,73,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.02072538860103627	.	A:0:C:183:G:0:T:4:N:0:O:6	.	0,107,4,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.1038961038961039	.	A:68:C:0:G:0:T:8:N:0:O:1	.	0,52,8,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:109:C:0:G:4:T:0:N:0:O:5	.	4,48,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	7228	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:88:N:0:O:3	.	0,35,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	7330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	1,39,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0875	.	A:7:C:0:G:72:T:0:N:0:O:1	.	7,16,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:85:G:0:T:2:N:0:O:8	.	0,67,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	2,27,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:133:C:0:G:3:T:0:N:0:O:0	.	3,49,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:5:G:0:T:96:N:0:O:0	.	0,62,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	1,42,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.0945945945945946	.	A:7:C:0:G:64:T:0:N:0:O:3	.	7,10,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:0:T:76:N:0:O:5	.	1,20,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,47,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,33,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:131:T:3:N:0:O:0	.	0,58,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:129:G:0:T:3:N:0:O:0	.	0,115,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	1,49,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,14,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:83:G:0:T:2:N:0:O:4	.	2,17,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:73:T:0:N:0:O:2	.	3,20,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:97:G:0:T:3:N:0:O:3	.	0,69,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:108:G:0:T:7:N:0:O:0	.	0,64,7,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07894736842105263	.	A:0:C:0:G:9:T:102:N:0:O:3	.	0,57,9,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	11001	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	3,30,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	11096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,40,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	2,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.05504587155963303	.	A:102:C:0:G:0:T:6:N:0:O:1	.	6,82,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	11657	T	G	T	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.022727272727272728	.	A:0:C:0:G:5:T:213:N:0:O:2	.	4,151,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.015151515151515152	.	A:0:C:0:G:127:T:3:N:0:O:68	.	1,55,2,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.05357142857142857	.	A:53:C:0:G:3:T:0:N:0:O:0	.	0,37,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:56:G:0:T:2:N:0:O:13	.	0,52,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:68:T:0:N:0:O:13	.	0,58,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:114:G:0:T:3:N:0:O:0	.	3,39,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:76:G:0:T:5:N:0:O:0	.	0,58,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:104:C:0:G:4:T:0:N:0:O:6	.	4,58,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:98:C:0:G:2:T:0:N:0:O:2	.	2,30,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:3:T:0:N:0:O:1	.	3,33,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:80:T:0:N:0:O:2	.	3,24,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13408	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:0:T:96:N:0:O:5	.	0,63,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	13444	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:1:G:2:T:0:N:0:O:2	.	2,47,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:82:G:0:T:4:N:0:O:2	.	0,82,4,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:5:C:0:G:80:T:0:N:0:O:15	.	5,45,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:101:C:0:G:3:T:0:N:0:O:1	.	2,47,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:94:G:0:T:0:N:0:O:7	.	2,53,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:56:C:0:G:2:T:0:N:0:O:4	.	1,10,1,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	13974	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:112:C:0:G:3:T:0:N:0:O:8	.	3,33,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	100	.	20	.	0.99	.	A:0:C:0:G:0:T:99:N:0:O:1	.	59,60,40,40	253.88	1177.6	.	.	.	.	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:94:G:0:T:0:N:0:O:0	.	0,73,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	14567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,68,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:88:G:0:T:1:N:0:O:5	.	2,41,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:96:N:0:O:3	.	0,64,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:97:G:0:T:2:N:0:O:6	.	0,58,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:4:C:0:G:89:T:0:N:0:O:1	.	4,27,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:69:N:0:O:2	.	0,63,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	15145	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	2,53,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:103:N:0:O:0	.	0,51,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:94:T:3:N:0:O:0	.	0,64,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.07692307692307693	.	A:0:C:47:G:0:T:4:N:0:O:1	.	0,26,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:94:G:0:T:3:N:0:O:1	.	0,52,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	16235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:123:C:0:G:3:T:0:N:0:O:1	.	3,70,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:0:C:1:G:106:T:5:N:0:O:3	.	5,45,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:106:G:0:T:4:N:0:O:0	.	0,61,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:0:C:0:G:5:T:71:N:0:O:0	.	1,33,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:112:T:0:N:0:O:23	.	1,41,2,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	16852	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	2,7,1,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:66:C:2:G:0:T:0:N:0:O:0	.	2,22,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.031088082901554404	.	A:6:C:0:G:183:T:0:N:0:O:4	.	6,26,0,167	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:74:C:0:G:3:T:0:N:0:O:2	.	3,13,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:0:T:72:N:0:O:1	.	2,14,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:3:T:0:N:0:O:0	.	3,38,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:66:G:0:T:2:N:0:O:2	.	0,48,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	17502	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.15267175572519084	.	A:0:C:109:G:0:T:20:N:0:O:2	.	7,55,13,76	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:4:C:0:G:106:T:0:N:0:O:0	.	4,29,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,35,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17805	A	C	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:128:C:3:G:0:T:0:N:0:O:1	.	3,50,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:65:G:0:T:3:N:0:O:2	.	0,40,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:97:C:0:G:1:T:4:N:0:O:15	.	0,40,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.10256410256410256	.	A:12:C:0:G:103:T:0:N:0:O:2	.	0,58,12,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,11,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	18014	C	A	C	16	ignore low frequency variant	Pass	False	False	True	244	.	20	.	0.020491803278688523	.	A:5:C:237:G:0:T:1:N:0:O:1	.	0,104,5,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	18245	A	T	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:130:C:0:G:0:T:3:N:0:O:18	.	3,67,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:84:N:0:O:0	.	1,31,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	18712	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.24242424242424243	.	A:32:C:0:G:97:T:0:N:0:O:3	.	14,60,18,72	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0390625	.	A:5:C:0:G:120:T:0:N:0:O:3	.	5,28,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:48:C:0:G:1:T:0:N:0:O:1	.	1,19,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19299	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:0:T:46:N:0:O:0	.	1,26,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,17,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	0,29,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19434	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,20,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	1,29,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19453	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:48:C:0:G:2:T:0:N:0:O:2	.	2,25,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,29,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	19487	T	A	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:0:T:38:N:0:O:0	.	0,28,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19489	T	G	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:1:T:42:N:0:O:1	.	0,29,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:1:T:0:N:0:O:0	.	1,20,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:45:T:0:N:0:O:0	.	1,17,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19508	A	C	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:1:G:0:T:0:N:0:O:0	.	1,21,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:45:T:0:N:0:O:0	.	1,15,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19901	C	T	C	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.02127659574468085	.	A:0:C:230:G:0:T:5:N:0:O:0	.	4,97,1,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:0:G:2:T:67:N:0:O:0	.	0,33,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,55,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:0:G:4:T:105:N:0:O:0	.	4,65,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	20714	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:107:T:0:N:0:O:2	.	3,46,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:148:C:0:G:4:T:0:N:0:O:0	.	4,87,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,44,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0213903743315508	.	A:0:C:183:G:0:T:4:N:0:O:0	.	0,79,4,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.08641975308641975	.	A:0:C:0:G:64:T:7:N:0:O:10	.	1,61,6,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	0,53,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	3,24,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,60,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:63:T:0:N:0:O:2	.	2,59,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:73:C:0:G:3:T:0:N:0:O:1	.	3,5,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0851063829787234	.	A:8:C:0:G:85:T:0:N:0:O:1	.	8,17,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:81:N:0:O:15	.	0,78,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21632	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,46,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21717	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:109:C:0:G:0:T:5:N:0:O:1	.	3,45,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:83:G:0:T:4:N:0:O:4	.	0,16,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:82:N:0:O:3	.	0,28,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	21883	T	A	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:0:T:118:N:0:O:0	.	0,54,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:91:T:0:N:0:O:1	.	3,40,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:0:G:4:T:100:N:0:O:0	.	4,30,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22249	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:1:C:0:G:135:T:3:N:0:O:3	.	0,68,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	0,60,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22647	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:3:G:0:T:132:N:0:O:0	.	0,98,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.05714285714285714	.	A:6:C:0:G:99:T:0:N:0:O:0	.	6,49,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22662	T	A	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:0:T:95:N:0:O:10	.	3,44,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22686	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:138:G:0:T:3:N:0:O:1	.	2,81,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22708	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:0:G:140:T:0:N:0:O:3	.	3,96,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:71:T:0:N:0:O:4	.	2,21,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.027932960893854747	.	A:0:C:5:G:0:T:174:N:0:O:0	.	0,122,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23223	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,45,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	0.8854961832061069	.	A:0:C:0:G:116:T:0:N:0:O:15	.	72,87,44,44	412.453	1450.5	.	.	.	.	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:101:C:0:G:3:T:0:N:0:O:3	.	3,43,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:75:T:0:N:0:O:6	.	3,23,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23874	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	83	.	20	.	0.27710843373493976	.	A:0:C:60:G:0:T:23:N:0:O:0	.	0,55,23,28	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,57,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23897	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:87:G:0:T:1:N:0:O:7	.	2,40,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:0:T:85:N:0:O:0	.	2,15,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:60:G:0:T:2:N:0:O:0	.	0,45,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.06666666666666667	.	A:0:C:51:G:1:T:4:N:0:O:4	.	0,51,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,13,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,13,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24309	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:111:N:0:O:0	.	1,65,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:62:C:2:G:1:T:0:N:0:O:0	.	2,33,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.07207207207207207	.	A:103:C:0:G:8:T:0:N:0:O:0	.	8,44,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:6:C:0:G:91:T:0:N:0:O:0	.	0,62,6,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.07216494845360824	.	A:0:C:0:G:7:T:89:N:0:O:1	.	0,61,7,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:108:C:0:G:4:T:0:N:0:O:0	.	4,45,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	44	.	20	.	0.06818181818181818	.	A:0:C:3:G:0:T:40:N:0:O:1	.	3,32,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	25424	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	0,54,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:69:G:0:T:3:N:0:O:6	.	2,53,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	1.0	.	A:0:C:0:G:0:T:120:N:0:O:0	.	44,44,76,76	210.0	1732.5	.	.	.	.	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:62:G:0:T:2:N:0:O:9	.	1,57,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.061224489795918366	.	A:43:C:3:G:0:T:0:N:0:O:3	.	1,36,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:94:G:0:T:3:N:0:O:1	.	0,67,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:61:C:0:G:3:T:0:N:0:O:0	.	3,17,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:0:G:3:T:0:N:0:O:0	.	3,44,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:177:C:0:G:4:T:0:N:0:O:0	.	0,140,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:0:C:194:G:1:T:5:N:0:O:1	.	2,132,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:88:N:0:O:0	.	0,44,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,62,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,43,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:89:G:0:T:3:N:0:O:0	.	0,56,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:5:C:1:G:91:T:0:N:0:O:0	.	5,25,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.08227848101265822	.	A:0:C:145:G:0:T:13:N:0:O:0	.	0,122,13,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.024390243902439025	.	A:0:C:5:G:0:T:200:N:0:O:0	.	0,132,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,59,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:0:G:0:T:3:N:0:O:0	.	3,23,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:79:T:0:N:0:O:0	.	3,8,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26724	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:121:T:3:N:0:O:0	.	2,54,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:0:C:74:G:0:T:5:N:0:O:1	.	0,52,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:88:C:0:G:2:T:0:N:0:O:9	.	2,45,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:1:G:2:T:0:N:0:O:0	.	2,31,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:77:T:0:N:0:O:0	.	3,24,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:91:G:0:T:4:N:0:O:0	.	0,71,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	27126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:115:T:0:N:0:O:1	.	3,62,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:2:G:0:T:97:N:0:O:7	.	1,80,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:93:G:0:T:2:N:0:O:5	.	0,74,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:78:G:1:T:2:N:0:O:1	.	0,24,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:80:G:0:T:2:N:0:O:2	.	0,29,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:0:C:48:G:0:T:2:N:0:O:1	.	0,22,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:114:T:0:N:0:O:2	.	3,7,0,112	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	0,25,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	0,19,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:1:G:79:T:0:N:0:O:1	.	3,5,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,58,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29176	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:1:G:105:T:0:N:0:O:2	.	3,39,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	1,30,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29689	T	G	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:1:T:31:N:0:O:0	.	0,19,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29732	C	A	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:26:G:0:T:0:N:0:O:0	.	0,15,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29733	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,14,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:23:T:0:N:0:O:2	.	1,9,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29760	T	G	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:0:G:1:T:35:N:0:O:0	.	1,21,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29766	G	C	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:35:T:0:N:0:O:0	.	1,21,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29776	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:28:C:0:G:0:T:1:N:0:O:5	.	1,16,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29793	T	A	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:0:T:29:N:0:O:0	.	0,17,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00091	artic-pipeline	NB01	MN908947.3	29818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:34:C:0:G:1:T:0:N:0:O:1	.	1,18,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00091	artic-pipeline	NB01	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:0:T:23:N:0:O:4	.	0,5,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	95	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,2,1,21	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	101	G	T	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:0:G:23:T:1:N:0:O:0	.	0,2,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	234	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,4,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	21	.	20	.	0.9523809523809523	.	A:0:C:0:G:1:T:20:N:0:O:0	.	3,3,17,18	69.237	1363.1	.	depth near threshold	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	284	G	T	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:0:G:19:T:1:N:0:O:0	.	1,2,0,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	313	C	T	T	17	accept high frequency variant	Pass	False	True	True	24	.	20	.	1.0	.	A:0:C:0:G:0:T:24:N:0:O:0	.	4,4,20,20	69.237	2121.3	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,5,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:115:N:0:O:0	.	0,63,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	802	A	G	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:120:C:0:G:3:T:0:N:0:O:24	.	0,69,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:91:T:0:N:0:O:1	.	1,30,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:4:C:122:G:0:T:0:N:0:O:7	.	4,69,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:67:T:0:N:0:O:20	.	2,9,2,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:0:G:2:T:0:N:0:O:0	.	0,43,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:71:G:0:T:2:N:0:O:8	.	0,51,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:0:C:99:G:0:T:5:N:0:O:1	.	0,46,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:4:G:0:T:90:N:0:O:0	.	0,45,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	1,44,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.014084507042253521	.	A:2:C:97:G:0:T:0:N:0:O:43	.	0,60,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:2:G:0:T:0:N:0:O:1	.	1,31,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1811	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.017094017094017096	.	A:2:C:0:G:86:T:0:N:0:O:29	.	0,55,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	1812	C	T	T	17	accept high frequency variant	Pass	False	True	True	70	.	20	.	0.9428571428571428	.	A:0:C:1:G:3:T:66:N:0:O:0	.	25,26,41,44	50.152	866.5	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	1814	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:58:C:0:G:0:T:4:N:0:O:0	.	2,22,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	2184	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	3,42,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.08064516129032258	.	A:10:C:0:G:113:T:1:N:0:O:0	.	10,39,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:112:C:3:G:0:T:0:N:0:O:1	.	3,33,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	0,22,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.03048780487804878	.	A:152:C:0:G:5:T:0:N:0:O:7	.	5,80,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:120:G:0:T:3:N:0:O:2	.	0,99,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	123	.	20	.	0.6504065040650406	.	A:0:C:0:G:0:T:80:N:0:O:43	.	40,83,40,40	195.62	1436.2	.	.	.	.	mixed position	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:0:T:86:N:0:O:1	.	0,47,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:0:C:81:G:0:T:5:N:0:O:1	.	0,51,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,47,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	3413	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:47:C:0:G:2:T:0:N:0:O:1	.	0,21,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	83	.	20	.	0.060240963855421686	.	A:0:C:78:G:0:T:5:N:0:O:0	.	0,61,5,22	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	0,55,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,80,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	0,79,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	4170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:86:G:0:T:2:N:0:O:2	.	1,48,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	4173	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:94:G:0:T:0:N:0:O:2	.	0,51,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	4321	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:76:G:0:T:1:N:0:O:13	.	2,56,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	4322	T	G	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:1:T:47:N:0:O:0	.	1,44,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0502283105022831	.	A:0:C:0:G:196:T:11:N:0:O:12	.	0,153,11,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.016853932584269662	.	A:0:C:0:G:140:T:3:N:0:O:35	.	0,157,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:3:G:0:T:131:N:0:O:5	.	0,90,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:132:C:0:G:0:T:3:N:0:O:5	.	0,72,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	5338	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:117:N:0:O:6	.	0,67,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,45,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:112:N:0:O:4	.	0,69,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:4:G:0:T:85:N:0:O:2	.	0,50,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:80:G:0:T:5:N:0:O:1	.	0,67,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	6116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,52,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	6148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:1:G:2:T:90:N:0:O:8	.	0,77,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	6262	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:98:N:0:O:6	.	0,77,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,57,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	6668	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	2,53,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.041666666666666664	.	A:0:C:182:G:0:T:8:N:0:O:2	.	0,108,8,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.12345679012345678	.	A:71:C:0:G:0:T:10:N:0:O:0	.	0,49,10,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	7278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	1,25,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:83:T:1:N:0:O:0	.	3,36,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:0:T:2:N:0:O:0	.	2,30,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	7701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,35,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:99:C:0:G:3:T:0:N:0:O:0	.	3,30,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:0:G:3:T:0:N:0:O:0	.	2,30,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:103:N:0:O:0	.	0,49,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:92:N:0:O:1	.	0,50,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	8487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:96:C:0:G:2:T:0:N:0:O:3	.	1,60,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:0:C:5:G:0:T:97:N:0:O:0	.	0,60,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:36:N:0:O:0	.	1,36,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:5:C:0:G:61:T:0:N:0:O:4	.	5,8,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:2:G:0:T:66:N:0:O:1	.	2,30,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:0:T:84:N:0:O:6	.	3,42,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,61,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.026737967914438502	.	A:0:C:178:G:0:T:5:N:0:O:4	.	0,121,5,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.01680672268907563	.	A:0:C:87:G:0:T:2:N:0:O:30	.	1,111,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	9887	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:88:N:0:O:5	.	2,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	9888	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	2,42,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	9951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	0,72,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:72:T:0:N:0:O:0	.	3,25,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:77:G:0:T:3:N:0:O:8	.	3,31,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:100:C:0:G:6:T:0:N:0:O:0	.	6,63,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10283	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:119:T:3:N:0:O:0	.	0,68,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,19,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:0:G:110:T:4:N:0:O:1	.	4,60,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:68:N:0:O:5	.	0,49,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:87:G:0:T:4:N:0:O:0	.	0,59,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:0:G:4:T:110:N:0:O:5	.	0,59,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:2:C:92:G:0:T:0:N:0:O:15	.	1,54,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.016574585635359115	.	A:0:C:0:G:132:T:3:N:0:O:46	.	3,129,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:0:G:3:T:89:N:0:O:1	.	3,53,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11272	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	3,67,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11442	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:93:G:0:T:2:N:0:O:5	.	0,83,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:94:C:0:G:0:T:6:N:0:O:1	.	6,66,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:0:C:94:G:0:T:6:N:0:O:1	.	0,77,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11810	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:1:G:97:T:0:N:0:O:0	.	1,55,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:69:C:0:G:2:T:0:N:0:O:0	.	0,48,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:113:C:0:G:3:T:0:N:0:O:1	.	3,51,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:2:C:0:G:86:T:0:N:0:O:26	.	0,81,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:5:C:0:G:93:T:0:N:0:O:2	.	5,29,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.07462686567164178	.	A:0:C:62:G:0:T:5:N:0:O:0	.	0,50,5,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	12845	G	C	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:3:G:129:T:0:N:0:O:0	.	0,63,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	12847	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:1:G:0:T:106:N:0:O:1	.	0,61,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,49,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,64,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13014	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,49,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:129:T:0:N:0:O:0	.	3,57,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:117:G:0:T:3:N:0:O:5	.	0,75,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:133:G:0:T:3:N:0:O:1	.	3,58,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.02564102564102564	.	A:4:C:0:G:0:T:138:N:0:O:14	.	4,91,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13475	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	0,60,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.08	.	A:0:C:67:G:0:T:6:N:0:O:2	.	0,64,6,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:110:T:0:N:0:O:14	.	3,53,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:97:G:0:T:0:N:0:O:4	.	5,44,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:3:T:0:N:0:O:1	.	3,43,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:111:C:0:G:0:T:3:N:0:O:2	.	0,67,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:108:C:0:G:0:T:3:N:0:O:2	.	0,66,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:1:T:0:N:0:O:1	.	0,3,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:119:C:0:G:4:T:0:N:0:O:0	.	4,55,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	3,55,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	106	.	20	.	0.9811320754716981	.	A:0:C:1:G:0:T:104:N:0:O:1	.	62,64,42,42	334.613	1285.7	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,33,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,56,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:7:C:0:G:84:T:0:N:0:O:1	.	7,33,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:4:G:0:T:85:N:0:O:2	.	0,82,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:40:G:0:T:2:N:0:O:1	.	0,21,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:86:G:0:T:4:N:0:O:1	.	1,56,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:1:G:0:T:2:N:0:O:0	.	2,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:87:N:0:O:2	.	1,36,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16629	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	2,49,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:83:T:0:N:0:O:4	.	2,22,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:91:T:0:N:0:O:3	.	2,15,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.09411764705882353	.	A:0:C:0:G:8:T:75:N:0:O:2	.	0,39,8,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.026143790849673203	.	A:4:C:0:G:114:T:0:N:0:O:35	.	0,53,4,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	16842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:82:C:0:G:3:T:0:N:0:O:1	.	0,8,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:2:G:0:T:0:N:0:O:1	.	2,19,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.02403846153846154	.	A:5:C:0:G:200:T:0:N:0:O:3	.	5,35,0,173	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:0:T:76:N:0:O:3	.	2,14,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:95:C:0:G:5:T:0:N:0:O:0	.	5,35,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:76:G:0:T:3:N:0:O:0	.	0,54,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:91:T:0:N:0:O:0	.	5,30,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:80:G:0:T:4:N:0:O:0	.	0,49,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:0:C:184:G:0:T:4:N:0:O:1	.	1,107,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.07246376811594203	.	A:0:C:64:G:0:T:5:N:0:O:0	.	0,44,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:84:C:0:G:0:T:4:N:0:O:11	.	1,47,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.08771929824561403	.	A:10:C:0:G:104:T:0:N:0:O:0	.	0,64,10,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:112:G:0:T:4:N:0:O:2	.	0,78,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:84:T:0:N:0:O:0	.	3,17,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:110:T:0:N:0:O:0	.	4,27,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	1,20,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19277	G	T	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:0:G:38:T:1:N:0:O:1	.	1,21,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19293	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:0:G:1:T:34:N:0:O:0	.	1,23,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19366	C	A	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:38:G:0:T:0:N:0:O:0	.	0,24,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,25,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19397	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,15,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19453	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:1:T:0:N:0:O:0	.	1,17,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19469	G	T	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:32:T:1:N:0:O:0	.	1,18,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19480	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	1,8,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,21,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19528	G	T	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:33:T:1:N:0:O:0	.	1,17,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19546	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,14,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19550	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,20,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19564	T	A	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:0:T:31:N:0:O:1	.	0,15,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19568	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,24,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19675	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:4:C:122:G:0:T:0:N:0:O:0	.	0,51,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:120:T:0:N:0:O:1	.	0,47,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:1:C:4:G:0:T:99:N:0:O:3	.	0,49,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:0:G:2:T:51:N:0:O:2	.	0,25,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	20181	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,26,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	20406	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	0,48,1,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:0:G:3:T:130:N:0:O:0	.	3,71,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.06338028169014084	.	A:133:C:0:G:9:T:0:N:0:O:0	.	9,87,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:98:C:0:G:2:T:0:N:0:O:3	.	2,25,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,51,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:71:C:0:G:2:T:0:N:0:O:1	.	0,2,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:2:C:0:G:97:T:0:N:0:O:15	.	1,20,1,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.06349206349206349	.	A:0:C:0:G:4:T:59:N:0:O:0	.	4,10,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.11475409836065574	.	A:0:C:0:G:49:T:7:N:0:O:5	.	0,38,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21152	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:83:T:2:N:0:O:0	.	2,43,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21323	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:93:C:0:G:3:T:0:N:0:O:1	.	0,47,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21324	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,45,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:1:G:0:T:22:N:0:O:22	.	0,37,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.07058823529411765	.	A:6:C:0:G:76:T:0:N:0:O:3	.	6,24,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:94:N:0:O:0	.	2,39,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:91:C:3:G:0:T:0:N:0:O:0	.	2,45,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:97:T:2:N:0:O:0	.	2,62,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:114:T:0:N:0:O:1	.	3,66,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.02976190476190476	.	A:0:C:5:G:0:T:152:N:0:O:11	.	0,123,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	22313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:111:G:0:T:5:N:0:O:0	.	0,72,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	22771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,26,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	128	.	20	.	0.9609375	.	A:0:C:0:G:123:T:0:N:0:O:5	.	60,65,63,63	343.703	1602.2	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:89:C:0:G:3:T:0:N:0:O:0	.	3,25,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23543	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:121:T:0:N:0:O:1	.	2,53,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:108:C:0:G:4:T:0:N:0:O:4	.	4,45,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.12244897959183673	.	A:0:C:85:G:0:T:12:N:0:O:1	.	0,72,12,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23897	C	A	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:110:G:0:T:0:N:0:O:7	.	3,64,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:0:T:69:N:0:O:0	.	2,17,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:70:N:0:O:1	.	1,15,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24039	T	G	T	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:0:G:3:T:137:N:0:O:3	.	0,74,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24087	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:98:T:2:N:0:O:0	.	2,59,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:62:G:0:T:4:N:0:O:7	.	0,68,4,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:4:C:0:G:85:T:0:N:0:O:0	.	4,22,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.07058823529411765	.	A:6:C:0:G:78:T:0:N:0:O:1	.	6,19,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24323	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:74:C:0:G:3:T:0:N:0:O:0	.	3,43,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:85:T:0:N:0:O:6	.	0,66,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:81:C:3:G:0:T:0:N:0:O:0	.	3,45,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:92:C:0:G:2:T:0:N:0:O:3	.	0,38,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:5:C:0:G:83:T:0:N:0:O:0	.	0,52,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:1:G:4:T:78:N:0:O:1	.	0,49,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	1,27,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	25397	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:91:C:0:G:3:T:0:N:0:O:5	.	3,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,68,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:1:T:2:N:0:O:0	.	2,42,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:0:G:3:T:89:N:0:O:0	.	3,36,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:2:G:0:T:0:N:0:O:0	.	2,34,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:86:G:0:T:1:N:0:O:49	.	3,58,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.07017543859649122	.	A:48:C:4:G:0:T:0:N:0:O:5	.	2,41,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:91:C:0:G:5:T:0:N:0:O:1	.	5,43,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:70:C:0:G:2:T:0:N:0:O:1	.	2,32,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	1,65,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	26005	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,56,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,13,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:76:G:0:T:4:N:0:O:30	.	0,99,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:0:C:96:G:0:T:4:N:0:O:42	.	0,115,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,39,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:83:G:0:T:4:N:0:O:0	.	0,59,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,36,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,35,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:4:C:0:G:76:T:0:N:0:O:1	.	4,26,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.029045643153526972	.	A:7:C:0:G:0:T:233:N:0:O:1	.	7,121,0,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0223463687150838	.	A:0:C:172:G:0:T:4:N:0:O:3	.	0,155,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.037914691943127965	.	A:0:C:8:G:0:T:203:N:0:O:0	.	0,155,8,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	3,12,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26710	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:80:G:0:T:2:N:0:O:2	.	0,24,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26752	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,63,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:0:C:81:G:0:T:5:N:0:O:1	.	0,66,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:87:G:0:T:3:N:0:O:1	.	0,59,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:1:G:2:T:94:N:0:O:6	.	0,54,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:83:C:0:G:1:T:2:N:0:O:0	.	1,54,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:6:C:0:G:73:T:0:N:0:O:1	.	6,22,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:0:C:80:G:0:T:5:N:0:O:0	.	0,64,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27106	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:88:G:2:T:1:N:0:O:4	.	0,68,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:4:G:0:T:112:N:0:O:0	.	0,69,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27509	C	T	T	17	accept high frequency variant	Pass	False	True	True	269	.	20	.	1.0	.	A:0:C:0:G:0:T:269:N:0:O:0	.	155,155,114,114	204.7	1120.2	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:87:G:0:T:0:N:0:O:1	.	4,57,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:118:C:0:G:0:T:4:N:0:O:32	.	4,106,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:73:T:0:N:0:O:3	.	2,24,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:113:T:0:N:0:O:1	.	3,37,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,37,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	28076	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:103:G:0:T:3:N:0:O:5	.	0,67,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:95:G:0:T:0:N:0:O:7	.	2,68,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	28723	T	C	T	16	ignore low frequency variant	Pass	False	False	True	252	.	20	.	0.023809523809523808	.	A:0:C:6:G:0:T:236:N:0:O:10	.	0,97,6,155	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	28817	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:65:T:0:N:0:O:8	.	2,17,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	0,21,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	1.0	.	A:120:C:0:G:0:T:0:N:0:O:0	.	25,25,95,95	186.919	2378.1	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	118	.	20	.	0.9915254237288136	.	A:117:C:1:G:0:T:0:N:0:O:0	.	22,22,95,96	186.919	2378.1	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	0.9916666666666667	.	A:0:C:119:G:1:T:0:N:0:O:0	.	24,24,95,96	186.919	2378.1	.	.	.	.	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:3:G:0:T:79:N:0:O:1	.	0,11,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04878048780487805	.	A:0:C:117:G:0:T:6:N:0:O:0	.	0,87,6,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:107:G:0:T:0:N:0:O:7	.	3,51,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:0:C:123:G:0:T:4:N:0:O:17	.	0,50,4,94	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00093	artic-pipeline	NB03	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:4:G:89:T:0:N:0:O:0	.	0,33,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:3:G:0:T:0:N:0:O:0	.	0,59,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29669	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:1:G:0:T:0:N:0:O:1	.	1,31,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:34:T:0:N:0:O:1	.	1,16,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29778	G	T	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:42:T:1:N:0:O:1	.	0,27,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:0:C:27:G:2:T:0:N:0:O:0	.	2,9,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00093	artic-pipeline	NB03	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:0:T:28:N:0:O:4	.	0,7,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:29:C:0:G:0:T:1:N:0:O:1	.	0,8,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,7,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	121	C	G	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:28:G:1:T:0:N:0:O:1	.	0,4,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	190	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,3,1,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	27	.	20	.	1.0	.	A:0:C:0:G:0:T:27:N:0:O:0	.	2,2,25,25	70.0	1275.4	.	.	.	.	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	252	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:28:T:0:N:0:O:0	.	0,3,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,3,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,51,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	484	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,54,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:126:C:0:G:3:T:0:N:0:O:0	.	3,27,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1030	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	0,61,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	1.0	.	A:0:C:0:G:0:T:140:N:0:O:0	.	78,78,62,62	280.0	1431.7	.	.	.	.	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.046153846153846156	.	A:0:C:57:G:0:T:3:N:0:O:5	.	1,48,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	1199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:3:T:128:N:0:O:0	.	1,72,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:93:T:0:N:0:O:4	.	2,24,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	1336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:0:T:94:N:0:O:0	.	0,41,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:0:T:3:N:0:O:0	.	3,43,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:117:G:3:T:0:N:0:O:1	.	3,48,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,62,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,54,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,58,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:79:C:2:G:0:T:0:N:0:O:1	.	1,44,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,2,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:0:T:99:N:0:O:3	.	0,43,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1795	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	0,44,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:66:C:0:G:2:T:0:N:0:O:0	.	0,6,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:0:G:122:T:0:N:0:O:14	.	0,50,3,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	2156	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:95:G:0:T:2:N:0:O:3	.	0,38,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:75:G:1:T:2:N:0:O:1	.	0,55,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.10101010101010101	.	A:10:C:0:G:89:T:0:N:0:O:0	.	10,25,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	2235	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:1:C:0:G:123:T:3:N:0:O:1	.	0,55,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	0,24,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.03333333333333333	.	A:145:C:5:G:0:T:0:N:0:O:0	.	5,61,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.03870967741935484	.	A:6:C:0:G:146:T:0:N:0:O:3	.	6,52,0,103	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	0,69,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:93:G:0:T:4:N:0:O:1	.	0,89,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,24,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	20	.	0.6475409836065574	.	A:0:C:0:G:0:T:79:N:0:O:43	.	40,83,39,39	260.915	1479.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:89:T:2:N:0:O:1	.	0,35,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:103:N:0:O:3	.	0,61,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:110:C:0:G:4:T:0:N:0:O:3	.	4,10,0,107	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:109:N:0:O:3	.	3,7,0,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.02564102564102564	.	A:141:C:0:G:4:T:0:N:0:O:11	.	4,39,0,117	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:0:C:95:G:0:T:5:N:0:O:2	.	0,46,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:67:T:0:N:0:O:4	.	2,14,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:79:G:0:T:3:N:0:O:4	.	0,34,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:50:C:0:G:2:T:0:N:0:O:0	.	1,4,1,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	81	.	20	.	0.08641975308641975	.	A:0:C:74:G:0:T:7:N:0:O:0	.	0,55,7,26	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3579	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:96:N:0:O:2	.	2,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:79:T:0:N:0:O:3	.	0,49,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3871	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,27,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,75,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	4296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	1,41,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:1:C:53:G:0:T:2:N:0:O:3	.	0,38,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:0:C:169:G:0:T:4:N:0:O:8	.	0,127,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.03208556149732621	.	A:0:C:0:G:169:T:6:N:0:O:12	.	0,135,6,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:0:C:173:G:0:T:4:N:0:O:12	.	0,91,4,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4577	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:89:G:0:T:2:N:0:O:11	.	0,23,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:90:N:0:O:9	.	3,24,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4582	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:0:C:147:G:0:T:4:N:0:O:1	.	2,60,2,92	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	4687	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:124:C:0:G:3:T:0:N:0:O:0	.	2,66,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:0:C:0:G:4:T:137:N:0:O:5	.	0,94,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,25,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:96:N:0:O:0	.	2,43,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	5488	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:113:C:0:G:3:T:0:N:0:O:5	.	3,74,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:97:T:0:N:0:O:0	.	3,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	0,59,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.09859154929577464	.	A:0:C:63:G:0:T:7:N:0:O:1	.	0,57,7,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	2,24,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.09411764705882353	.	A:0:C:77:G:0:T:8:N:0:O:0	.	0,65,8,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:96:T:0:N:0:O:1	.	3,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:82:N:0:O:18	.	0,50,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,77,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:104:G:0:T:3:N:0:O:1	.	0,74,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:72:T:0:N:0:O:1	.	2,24,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,71,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,43,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:109:C:0:G:3:T:0:N:0:O:1	.	3,56,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6626	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:108:C:3:G:0:T:0:N:0:O:4	.	0,47,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:0:G:3:T:94:N:0:O:2	.	0,61,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:81:G:0:T:2:N:0:O:2	.	0,52,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.05188679245283019	.	A:187:C:0:G:11:T:3:N:0:O:11	.	11,87,0,125	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.021052631578947368	.	A:0:C:177:G:0:T:4:N:0:O:9	.	0,114,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:0:C:175:G:0:T:4:N:0:O:2	.	0,117,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:87:T:0:N:0:O:0	.	4,32,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:78:C:0:G:0:T:7:N:0:O:0	.	0,60,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:94:C:0:G:0:T:3:N:0:O:0	.	3,33,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:0:C:5:G:0:T:99:N:0:O:3	.	1,57,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,58,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:119:N:0:O:1	.	0,67,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:4:G:0:T:91:N:0:O:0	.	0,42,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	1,27,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:72:T:0:N:0:O:1	.	3,13,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	9335	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	0,71,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	9336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:0:T:108:N:0:O:3	.	0,78,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:0:C:4:G:0:T:185:N:0:O:5	.	0,160,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	9587	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:91:C:0:G:0:T:2:N:0:O:7	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:85:G:0:T:4:N:0:O:32	.	1,118,3,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:2:C:0:G:61:T:0:N:0:O:0	.	2,14,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:77:G:0:T:3:N:0:O:7	.	3,27,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	10072	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,29,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,58,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	10468	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:3:G:0:T:146:N:0:O:0	.	0,67,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:110:C:0:G:4:T:0:N:0:O:0	.	4,38,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:95:G:0:T:5:N:0:O:1	.	0,64,5,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	10858	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,40,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:0:G:5:T:92:N:0:O:4	.	0,53,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	11227	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:5:G:0:T:127:N:0:O:0	.	2,60,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	11301	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:0:C:4:G:0:T:111:N:0:O:26	.	0,84,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:101:G:0:T:3:N:0:O:2	.	0,88,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.01904761904761905	.	A:0:C:0:G:135:T:4:N:0:O:71	.	0,66,4,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:61:C:0:G:4:T:0:N:0:O:0	.	0,43,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:88:G:0:T:2:N:0:O:4	.	0,47,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:0:C:62:G:0:T:3:N:0:O:2	.	0,51,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	12705	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:111:N:0:O:0	.	0,57,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	12810	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:79:N:0:O:1	.	1,36,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	0,55,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:119:G:0:T:3:N:0:O:5	.	0,78,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	2,43,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.13043478260869565	.	A:0:C:60:G:0:T:9:N:0:O:0	.	0,58,9,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:86:T:0:N:0:O:9	.	4,30,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:3:T:102:N:0:O:2	.	0,48,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:3:C:0:G:144:T:0:N:0:O:6	.	3,33,0,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.022598870056497175	.	A:0:C:172:G:0:T:4:N:0:O:1	.	0,90,4,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:58:C:0:G:2:T:0:N:0:O:3	.	0,4,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:98:C:0:G:4:T:0:N:0:O:1	.	4,36,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:95:T:0:N:0:O:1	.	3,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:104:T:0:N:0:O:1	.	4,43,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	96	.	20	.	0.9583333333333334	.	A:0:C:2:G:0:T:92:N:0:O:2	.	46,46,46,50	331.994	1117.3	.	.	.	.	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:115:T:0:N:0:O:1	.	3,51,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:0:T:2:N:0:O:0	.	2,35,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	14824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,52,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	14967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:107:T:0:N:0:O:1	.	3,40,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:108:T:0:N:0:O:0	.	4,33,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,31,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15100	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:0:G:114:T:5:N:0:O:7	.	2,46,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.07692307692307693	.	A:0:C:5:G:0:T:60:N:0:O:0	.	0,54,5,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15298	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,33,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:2:T:0:N:0:O:0	.	0,49,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,56,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.014925373134328358	.	A:0:C:1:G:0:T:46:N:0:O:20	.	0,39,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.16	.	A:0:C:41:G:0:T:8:N:0:O:1	.	0,21,8,29	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	16045	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	1,39,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,60,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:84:C:0:G:0:T:5:N:0:O:2	.	5,45,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:98:G:5:T:0:N:0:O:1	.	5,48,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	16432	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:77:T:0:N:0:O:2	.	0,57,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.09333333333333334	.	A:0:C:0:G:7:T:68:N:0:O:0	.	0,35,7,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:5:C:0:G:107:T:0:N:0:O:30	.	0,47,5,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	16842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:77:C:0:G:2:T:0:N:0:O:2	.	0,5,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:2:G:0:T:0:N:0:O:0	.	2,24,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.022222222222222223	.	A:219:C:0:G:5:T:0:N:0:O:1	.	5,41,0,184	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:77:C:0:G:2:T:1:N:0:O:8	.	1,42,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:76:G:0:T:4:N:0:O:0	.	0,47,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:0:C:64:G:0:T:3:N:0:O:5	.	0,51,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:3:G:0:T:0:N:0:O:0	.	3,47,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,24,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,39,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,45,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,42,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:96:C:0:G:0:T:2:N:0:O:6	.	0,53,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:82:G:1:T:4:N:0:O:0	.	0,46,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:98:C:0:G:2:T:3:N:0:O:10	.	0,50,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07894736842105263	.	A:9:C:0:G:105:T:0:N:0:O:0	.	0,60,9,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:88:G:0:T:2:N:0:O:4	.	0,75,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:108:G:0:T:4:N:0:O:0	.	0,76,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:0:G:3:T:85:N:0:O:0	.	2,30,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:0:C:90:G:0:T:6:N:0:O:5	.	6,29,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18669	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:0:G:3:T:118:N:0:O:2	.	0,50,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18703	G	T	T	14	new position at high frequency	Pass	False	True	True	118	.	20	.	0.9915254237288136	.	A:0:C:0:G:0:T:117:N:0:O:1	.	41,42,76,76	280.0	1669.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:4:C:0:G:82:T:0:N:0:O:0	.	4,14,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:36:C:0:G:0:T:1:N:0:O:6	.	0,15,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	18947	T	C	T	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.02032520325203252	.	A:0:C:5:G:0:T:234:N:0:O:7	.	0,131,5,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19041	C	A	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:144:G:0:T:0:N:0:O:0	.	0,52,3,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19043	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:132:G:0:T:4:N:0:O:2	.	3,46,1,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:5:C:0:G:125:T:0:N:0:O:0	.	5,32,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19193	G	T	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:1:C:0:G:142:T:4:N:0:O:0	.	1,64,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19431	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:20:N:0:O:0	.	1,11,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19441	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:21:G:0:T:1:N:0:O:1	.	0,14,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19467	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,12,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19469	G	T	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:0:G:19:T:1:N:0:O:0	.	1,12,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19470	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	1,13,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19510	T	A	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:0:T:21:N:0:O:0	.	0,12,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19521	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:20:N:0:O:0	.	0,12,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19523	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,12,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19532	A	T	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:0:T:1:N:0:O:0	.	1,11,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:5:C:0:G:0:T:150:N:0:O:34	.	0,76,5,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.05084745762711865	.	A:112:C:0:G:0:T:6:N:0:O:0	.	0,61,6,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:0:G:3:T:72:N:0:O:3	.	0,38,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20029	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:122:T:0:N:0:O:6	.	3,65,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20165	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:124:N:0:O:0	.	1,73,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20191	G	C	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:112:T:0:N:0:O:1	.	3,56,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20309	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:114:C:1:G:3:T:0:N:0:O:0	.	3,71,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20408	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	1,67,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20463	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:119:C:0:G:3:T:0:N:0:O:0	.	3,64,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:117:T:1:N:0:O:0	.	3,63,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:0:G:3:T:125:N:0:O:0	.	3,63,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.03048780487804878	.	A:159:C:0:G:5:T:0:N:0:O:0	.	5,94,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.022222222222222223	.	A:219:C:0:G:5:T:0:N:0:O:1	.	5,74,0,151	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	20923	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:4:G:0:T:97:N:0:O:0	.	0,48,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	0,1,2,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:0:C:0:G:3:T:69:N:0:O:0	.	1,10,2,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21168	G	T	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:25:T:1:N:0:O:0	.	0,9,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21233	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,8,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:78:G:0:T:3:N:0:O:0	.	0,59,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:76:T:0:N:0:O:4	.	2,21,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21489	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:0:G:2:T:0:N:0:O:1	.	1,18,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21558	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,52,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:0:G:3:T:0:N:0:O:0	.	3,47,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:93:G:0:T:2:N:0:O:7	.	0,83,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,71,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:4:C:0:G:113:T:0:N:0:O:9	.	4,54,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:86:T:0:N:0:O:0	.	5,40,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	2,22,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:113:N:0:O:3	.	0,79,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	22313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,78,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	138	.	20	.	0.8985507246376812	.	A:0:C:0:G:124:T:0:N:0:O:14	.	74,88,50,50	342.247	1485.9	.	.	.	.	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:1:G:2:T:0:N:0:O:0	.	2,38,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:70:T:0:N:0:O:9	.	4,24,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	23566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:0:G:2:T:1:N:0:O:0	.	2,26,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,23,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:79:G:0:T:5:N:0:O:0	.	0,64,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:87:T:0:N:0:O:0	.	3,16,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,15,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,61,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24320	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.01875	.	A:0:C:114:G:0:T:3:N:0:O:43	.	0,76,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:114:C:0:G:3:T:0:N:0:O:2	.	3,46,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:114:G:0:T:0:N:0:O:0	.	4,68,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:121:C:0:G:0:T:4:N:0:O:4	.	4,90,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,62,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:77:C:2:G:0:T:0:N:0:O:2	.	2,46,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:92:C:0:G:4:T:0:N:0:O:1	.	4,56,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,81,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:92:N:0:O:1	.	0,82,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24931	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	0,74,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,70,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:30:N:0:O:1	.	1,27,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	25060	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:77:C:0:G:2:T:0:N:0:O:1	.	2,28,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	25064	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:124:T:0:N:0:O:0	.	3,73,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:1:T:0:N:0:O:0	.	0,1,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:0:T:2:N:0:O:0	.	2,39,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	111	.	20	.	1.0	.	A:0:C:0:G:0:T:111:N:0:O:0	.	49,49,62,62	210.0	1916.2	.	.	.	.	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	25613	C	G	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:61:G:2:T:0:N:0:O:2	.	0,11,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:74:G:0:T:2:N:0:O:5	.	0,68,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.06060606060606061	.	A:60:C:4:G:0:T:0:N:0:O:2	.	0,39,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,48,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:76:N:0:O:0	.	0,45,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:114:C:0:G:3:T:0:N:0:O:1	.	3,50,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:95:G:0:T:3:N:0:O:2	.	0,52,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:91:T:0:N:0:O:2	.	3,24,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26001	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,63,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:0:N:0:O:1	.	2,16,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26154	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:80:C:0:G:2:T:0:N:0:O:25	.	2,39,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	1,60,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:0:C:86:G:0:T:5:N:0:O:30	.	0,98,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:89:G:0:T:3:N:0:O:0	.	0,64,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:82:C:0:G:3:T:0:N:0:O:0	.	2,29,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:95:T:0:N:0:O:0	.	4,37,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:87:T:0:N:0:O:0	.	3,31,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.03398058252427184	.	A:0:C:195:G:0:T:7:N:0:O:4	.	0,175,7,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:106:C:0:G:0:T:3:N:0:O:4	.	3,44,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.14606741573033707	.	A:13:C:0:G:76:T:0:N:0:O:0	.	13,20,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.05785123966942149	.	A:0:C:113:G:0:T:7:N:0:O:1	.	0,93,7,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:107:G:0:T:3:N:0:O:2	.	0,62,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27006	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:3:G:0:T:0:N:0:O:0	.	3,29,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27082	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:90:N:0:O:1	.	2,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:73:T:0:N:0:O:1	.	4,16,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.10465116279069768	.	A:0:C:77:G:0:T:9:N:0:O:0	.	0,60,9,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27214	G	T	T	17	accept high frequency variant	Pass	False	True	True	98	.	20	.	0.9387755102040817	.	A:0:C:0:G:0:T:92:N:0:O:6	.	61,67,31,31	208.474	1429.5	.	.	.	.	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	1,56,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27439	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27684	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,62,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	27685	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:0:T:87:N:0:O:5	.	0,71,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27688	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:48:G:0:T:2:N:0:O:3	.	0,16,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:83:G:0:T:0:N:0:O:2	.	4,49,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.03225806451612903	.	A:119:C:1:G:0:T:5:N:0:O:30	.	4,94,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:75:T:0:N:0:O:4	.	2,15,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	27840	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:95:N:0:O:2	.	0,62,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:2:T:68:N:0:O:2	.	2,36,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28220	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:2:T:1:N:0:O:2	.	1,34,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28247	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:0:G:0:T:2:N:0:O:2	.	2,45,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:5:G:0:T:91:N:0:O:0	.	0,55,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:1:G:2:T:0:N:0:O:1	.	2,5,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:0:C:71:G:0:T:5:N:0:O:4	.	0,32,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:67:G:0:T:2:N:0:O:0	.	0,20,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:0:C:48:G:0:T:3:N:0:O:1	.	0,21,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	28867	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.014925373134328358	.	A:0:C:1:G:0:T:44:N:0:O:22	.	0,51,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:80:G:0:T:4:N:0:O:0	.	0,30,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00094	artic-pipeline	NB04	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:2:G:0:T:69:N:0:O:0	.	0,21,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:85:T:1:N:0:O:4	.	2,12,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:106:N:0:O:0	.	0,60,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	29199	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,45,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	29314	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,23,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:84:C:0:G:2:T:0:N:0:O:4	.	2,22,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:83:T:0:N:0:O:12	.	3,24,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	29578	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:135:G:0:T:3:N:0:O:3	.	3,88,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00094	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	227	G	A	N	1	near depth threshold	Alarm	False	False	False	7	.	20	.	0.0	.	A:0:C:0:G:7:T:0:N:0:O:0	.	0,0,0,7	.	166.8	.	depth near threshold	.	mismatch(n)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	18	.	20	.	1.0	.	A:0:C:0:G:0:T:18:N:0:O:0	.	10,10,8,8	59.237	1422.4	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	439	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:49:C:0:G:1:T:0:N:0:O:2	.	0,7,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,20,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:76:N:0:O:6	.	1,22,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	802	A	G	A	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.018518518518518517	.	A:135:C:0:G:3:T:0:N:0:O:24	.	1,71,2,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	1,35,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:78:N:0:O:2	.	0,56,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:2:C:0:G:50:T:0:N:0:O:3	.	2,16,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:37:C:0:G:2:T:0:N:0:O:0	.	2,4,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.05660377358490566	.	A:3:C:0:G:47:T:0:N:0:O:3	.	3,17,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1203	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,59,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1257	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	3,70,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.03164556962025317	.	A:0:C:151:G:0:T:5:N:0:O:2	.	0,61,5,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:0:C:5:G:0:T:137:N:0:O:0	.	0,64,5,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.023391812865497075	.	A:0:C:4:G:0:T:167:N:0:O:0	.	0,64,4,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:4:C:0:G:83:T:0:N:0:O:2	.	4,48,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:4:G:0:T:96:N:0:O:0	.	0,48,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.06766917293233082	.	A:9:C:0:G:123:T:0:N:0:O:1	.	9,28,0,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	121	.	20	.	1.0	.	A:0:C:0:G:0:T:121:N:0:O:0	.	40,40,81,81	206.227	1330.7	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:126:C:3:G:0:T:0:N:0:O:0	.	3,56,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:129:C:0:G:4:T:0:N:0:O:3	.	4,64,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	2863	A	G	A	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.03111111111111111	.	A:216:C:1:G:7:T:0:N:0:O:1	.	2,79,5,146	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	2894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,24,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:62:C:2:G:0:T:0:N:0:O:0	.	2,24,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:87:G:0:T:2:N:0:O:12	.	2,46,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	127	.	20	.	0.7007874015748031	.	A:0:C:0:G:0:T:89:N:0:O:38	.	55,93,34,34	204.466	1461.5	.	.	.	.	mixed position	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:2:T:0:N:0:O:2	.	2,12,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,60,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:120:C:0:G:3:T:0:N:0:O:9	.	3,41,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:101:C:0:G:4:T:0:N:0:O:1	.	0,59,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:99:C:0:G:0:T:4:N:0:O:1	.	0,61,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:0:T:1:N:0:O:1	.	1,21,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:40:C:0:G:1:T:0:N:0:O:2	.	0,4,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,70,2,23	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:3:T:82:N:0:O:17	.	0,35,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:4:C:0:G:62:T:0:N:0:O:2	.	0,27,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:0:C:55:G:0:T:3:N:0:O:0	.	0,49,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:84:N:0:O:1	.	0,46,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:86:G:0:T:3:N:0:O:6	.	0,52,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,40,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:0:C:47:G:0:T:2:N:0:O:2	.	0,39,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:0:T:81:N:0:O:20	.	0,55,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.04060913705583756	.	A:0:C:0:G:179:T:8:N:0:O:10	.	0,145,8,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.021834061135371178	.	A:5:C:0:G:224:T:0:N:0:O:0	.	0,114,5,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.028985507246376812	.	A:0:C:188:G:0:T:6:N:0:O:13	.	0,111,6,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:126:C:0:G:0:T:3:N:0:O:4	.	0,58,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	1,54,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:1:G:3:T:112:N:0:O:3	.	0,56,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:98:T:2:N:0:O:3	.	2,39,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	2,34,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5393	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,28,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:108:C:0:G:0:T:3:N:0:O:5	.	0,47,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:107:T:0:N:0:O:0	.	1,45,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	0,89,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5826	C	T	T	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	1.0	.	A:0:C:0:G:0:T:120:N:0:O:0	.	84,84,36,36	278.474	954.6	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	5836	A	C	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:121:C:3:G:0:T:0:N:0:O:3	.	3,91,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	5857	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:5:C:0:G:79:T:0:N:0:O:1	.	5,50,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	0,61,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.06493506493506493	.	A:0:C:71:G:0:T:5:N:0:O:1	.	0,56,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:78:G:0:T:3:N:0:O:2	.	0,30,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6317	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:1:C:81:G:0:T:2:N:0:O:1	.	0,31,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:76:N:0:O:0	.	0,36,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:91:N:0:O:6	.	0,45,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:0:G:4:T:83:N:0:O:6	.	0,39,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6626	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:94:C:2:G:2:T:0:N:0:O:6	.	2,69,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:62:G:0:T:2:N:0:O:0	.	2,48,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.023121387283236993	.	A:0:C:165:G:0:T:4:N:0:O:4	.	0,100,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6835	T	A	T	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:4:C:0:G:0:T:180:N:0:O:17	.	4,77,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	3,9,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:108:T:3:N:0:O:5	.	0,27,3,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	6995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:91:C:0:G:0:T:2:N:0:O:2	.	0,28,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.2127659574468085	.	A:36:C:0:G:0:T:10:N:0:O:1	.	0,22,10,25	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:57:T:0:N:0:O:0	.	2,39,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	7514	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:107:C:0:G:3:T:0:N:0:O:1	.	3,88,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:83:T:0:N:0:O:1	.	3,63,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,63,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:116:G:0:T:3:N:0:O:0	.	0,61,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	3,32,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:123:N:0:O:0	.	0,58,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	8186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:0:C:4:G:0:T:153:N:0:O:0	.	0,59,4,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	8606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.017094017094017096	.	A:0:C:82:G:0:T:2:N:0:O:33	.	2,100,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	1,43,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:1:G:69:T:0:N:0:O:1	.	3,5,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:0:T:84:N:0:O:11	.	4,60,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,53,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:99:G:0:T:3:N:0:O:2	.	0,65,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:74:G:0:T:3:N:0:O:2	.	0,34,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:0:G:120:T:4:N:0:O:0	.	0,69,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:139:G:0:T:3:N:0:O:4	.	0,105,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:2:G:0:T:52:N:0:O:0	.	1,47,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10152	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:0:T:2:N:0:O:0	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10227	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:86:N:0:O:2	.	0,48,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10228	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,50,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,21,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:90:G:0:T:3:N:0:O:1	.	0,36,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	10529	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	1,22,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:3:G:0:T:70:N:0:O:8	.	0,63,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:0:C:97:G:0:T:5:N:0:O:1	.	0,71,5,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:2:C:91:G:0:T:0:N:0:O:13	.	2,54,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	11104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	1,20,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	11233	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,33,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	11301	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:0:T:101:N:0:O:20	.	0,45,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	11445	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:0:T:110:N:0:O:2	.	0,69,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:77:G:0:T:5:N:0:O:2	.	0,50,5,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	11889	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:94:N:0:O:0	.	2,35,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,22,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	12040	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,22,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:49:T:1:N:0:O:0	.	0,26,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12086	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,25,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12092	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:46:T:0:N:0:O:1	.	1,25,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:38:G:0:T:2:N:0:O:12	.	0,36,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12152	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:43:T:0:N:0:O:0	.	1,25,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:33:T:0:N:0:O:9	.	0,31,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	1,19,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:46:G:0:T:1:N:0:O:2	.	1,19,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12321	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,22,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12414	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,20,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:41:T:0:N:0:O:2	.	1,12,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12437	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:44:G:0:T:1:N:0:O:1	.	1,23,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12452	C	A	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:114:G:0:T:1:N:0:O:2	.	0,60,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12659	A	T	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:74:C:0:G:0:T:2:N:0:O:1	.	0,21,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:63:G:0:T:3:N:0:O:0	.	0,48,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:90:N:0:O:2	.	0,41,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,43,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,11,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:126:T:0:N:0:O:0	.	3,60,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:116:T:0:N:0:O:8	.	3,38,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:131:C:0:G:4:T:0:N:0:O:11	.	4,59,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:1:C:72:G:0:T:5:N:0:O:0	.	0,71,5,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:87:T:0:N:0:O:9	.	2,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	2,46,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:3:T:93:N:0:O:1	.	0,52,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:96:C:0:G:0:T:2:N:0:O:8	.	0,68,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.08333333333333333	.	A:43:C:0:G:4:T:0:N:0:O:1	.	0,2,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:75:G:0:T:3:N:0:O:4	.	0,65,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	98	.	20	.	0.9795918367346939	.	A:0:C:0:G:0:T:96:N:0:O:2	.	51,53,45,45	199.694	1234.2	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	1,62,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,50,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:5:G:0:T:105:N:0:O:0	.	0,49,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:0:C:3:G:0:T:55:N:0:O:0	.	0,45,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	15333	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,68,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	15422	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:91:C:2:G:1:T:0:N:0:O:2	.	2,52,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	15670	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:123:T:0:N:0:O:2	.	3,105,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:121:C:0:G:3:T:0:N:0:O:0	.	3,101,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.07142857142857142	.	A:0:C:52:G:0:T:4:N:0:O:0	.	0,34,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:80:T:0:N:0:O:4	.	2,21,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:83:N:0:O:5	.	1,24,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:89:T:0:N:0:O:3	.	4,20,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:69:T:0:N:0:O:4	.	2,18,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07017543859649122	.	A:0:C:0:G:8:T:106:N:0:O:0	.	0,64,8,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:4:C:0:G:120:T:1:N:0:O:27	.	0,75,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	16852	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:69:T:0:N:0:O:2	.	1,15,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:77:C:4:G:0:T:0:N:0:O:0	.	4,41,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.02976190476190476	.	A:156:C:0:G:5:T:0:N:0:O:7	.	5,51,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.04819277108433735	.	A:8:C:0:G:151:T:0:N:0:O:7	.	8,47,0,119	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:55:C:0:G:3:T:0:N:0:O:0	.	3,10,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.06896551724137931	.	A:4:C:0:G:0:T:52:N:0:O:2	.	4,13,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:83:C:0:G:4:T:0:N:0:O:0	.	4,46,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17334	G	T	T	14	new position at high frequency	Pass	False	True	True	128	.	20	.	0.953125	.	A:0:C:1:G:5:T:122:N:0:O:0	.	80,84,42,44	208.474	1578.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	1,57,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:0:G:114:T:3:N:0:O:0	.	1,69,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,48,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	0,44,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:109:C:0:G:0:T:3:N:0:O:2	.	0,50,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:190:G:0:T:5:N:0:O:0	.	2,98,3,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.06422018348623854	.	A:7:C:0:G:102:T:0:N:0:O:0	.	0,70,7,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,38,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:74:T:0:N:0:O:0	.	2,25,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.027522935779816515	.	A:6:C:0:G:212:T:0:N:0:O:0	.	6,95,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.030303030303030304	.	A:0:C:159:G:0:T:5:N:0:O:1	.	0,104,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	18735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	1,16,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:0:G:3:T:87:N:0:O:0	.	2,35,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:90:N:0:O:2	.	0,47,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.11764705882352941	.	A:1:C:59:G:0:T:8:N:0:O:0	.	0,52,8,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	19656	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:0:C:0:G:91:T:8:N:0:O:1	.	3,38,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.03260869565217391	.	A:6:C:0:G:0:T:141:N:0:O:37	.	0,59,6,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.05263157894736842	.	A:108:C:0:G:0:T:6:N:0:O:0	.	0,56,6,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:104:N:0:O:2	.	0,54,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:0:G:3:T:67:N:0:O:0	.	0,29,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,25,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.07446808510638298	.	A:0:C:0:G:82:T:7:N:0:O:5	.	0,69,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,60,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:0:T:35:N:0:O:22	.	1,48,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:81:G:0:T:2:N:0:O:2	.	0,57,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21427	A	G	A	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.030303030303030304	.	A:224:C:0:G:7:T:0:N:0:O:0	.	4,101,3,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:90:G:0:T:4:N:0:O:0	.	0,48,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:0:T:2:N:0:O:0	.	2,30,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,12,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:2:G:0:T:83:N:0:O:20	.	0,78,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	2,28,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:99:G:0:T:4:N:0:O:2	.	0,86,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:107:T:0:N:0:O:6	.	3,64,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,35,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.03365384615384615	.	A:199:C:0:G:7:T:0:N:0:O:2	.	7,104,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:0:C:194:G:0:T:4:N:0:O:0	.	4,156,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:0:C:0:G:4:T:165:N:0:O:0	.	4,75,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,29,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22343	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	1,28,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22381	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:46:T:0:N:0:O:0	.	1,37,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:1:T:0:N:0:O:1	.	1,37,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22393	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	1,30,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22426	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	1,32,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22427	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:45:T:1:N:0:O:0	.	1,29,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22447	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,27,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22453	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:1:G:0:T:0:N:0:O:0	.	1,28,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:42:N:0:O:1	.	0,29,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	0,6,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:1:T:30:N:0:O:2	.	1,12,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22526	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	1,25,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22527	C	A	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:2:C:41:G:0:T:0:N:0:O:0	.	2,27,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22529	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:41:C:2:G:0:T:0:N:0:O:1	.	2,23,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22533	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,30,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22538	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,31,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	251	.	20	.	0.01593625498007968	.	A:0:C:0:G:4:T:193:N:0:O:54	.	0,113,4,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.9104477611940298	.	A:0:C:0:G:122:T:0:N:0:O:12	.	57,69,65,65	140.0	1489.2	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	23656	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:107:C:1:G:3:T:0:N:0:O:1	.	3,38,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:123:C:0:G:3:T:0:N:0:O:1	.	3,30,0,97	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.07563025210084033	.	A:0:C:108:G:0:T:9:N:0:O:2	.	0,90,9,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	23902	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:57:C:0:G:2:T:0:N:0:O:1	.	0,21,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:101:T:0:N:0:O:0	.	2,12,1,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.0660377358490566	.	A:0:C:99:G:0:T:7:N:0:O:0	.	0,73,7,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.06060606060606061	.	A:0:C:51:G:0:T:4:N:0:O:11	.	0,59,4,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,13,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:90:T:0:N:0:O:4	.	2,18,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,42,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	227	.	20	.	0.022026431718061675	.	A:3:C:212:G:0:T:5:N:0:O:7	.	0,110,5,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:186:G:0:T:5:N:0:O:4	.	0,131,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:100:T:1:N:0:O:0	.	0,71,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:0:G:4:T:98:N:0:O:2	.	0,70,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:108:G:0:T:4:N:0:O:2	.	0,84,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:73:C:0:G:3:T:0:N:0:O:3	.	3,20,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25387	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:114:T:0:N:0:O:0	.	3,57,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,58,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:95:N:0:O:3	.	2,43,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	119	.	20	.	1.0	.	A:0:C:0:G:0:T:119:N:0:O:0	.	66,66,53,53	210.0	2018.4	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:4:C:99:G:0:T:0:N:0:O:7	.	4,63,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:0:C:92:G:0:T:2:N:0:O:19	.	2,107,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25756	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,84,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25768	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:45:C:0:G:1:T:0:N:0:O:8	.	1,40,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:4:C:66:G:0:T:0:N:0:O:24	.	4,78,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25798	A	C	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:64:C:2:G:0:T:0:N:0:O:0	.	2,62,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:48:C:2:G:0:T:0:N:0:O:4	.	2,51,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	0,90,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:87:C:0:G:2:T:0:N:0:O:5	.	2,79,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:75:C:0:G:3:T:0:N:0:O:1	.	3,66,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0784313725490196	.	A:46:C:0:G:4:T:0:N:0:O:1	.	4,40,0,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	25892	T	G	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:1:T:45:N:0:O:2	.	1,34,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26152	G	C	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:92:T:1:N:0:O:0	.	1,58,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.034013605442176874	.	A:5:C:0:G:141:T:0:N:0:O:1	.	5,56,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	2,44,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:84:T:0:N:0:O:0	.	3,37,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.05102040816326531	.	A:0:C:185:G:0:T:10:N:0:O:1	.	0,169,10,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.035398230088495575	.	A:0:C:8:G:0:T:218:N:0:O:0	.	0,175,8,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26561	T	A	T	16	ignore low frequency variant	Pass	False	False	True	251	.	20	.	0.01593625498007968	.	A:4:C:0:G:0:T:161:N:0:O:86	.	4,130,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:0:T:2:N:0:O:0	.	2,25,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.1076923076923077	.	A:7:C:0:G:58:T:0:N:0:O:0	.	7,12,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:88:G:0:T:4:N:0:O:0	.	0,74,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:0:C:174:G:0:T:4:N:0:O:5	.	0,163,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:92:G:0:T:4:N:0:O:1	.	0,59,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:3:T:101:N:0:O:4	.	0,56,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:0:T:2:N:0:O:0	.	0,57,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:2:G:94:T:0:N:0:O:0	.	2,33,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:83:C:0:G:2:T:0:N:0:O:11	.	2,30,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,28,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.07792207792207792	.	A:6:C:0:G:71:T:0:N:0:O:0	.	6,20,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:0:C:79:G:0:T:5:N:0:O:1	.	0,65,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:89:G:0:T:5:N:0:O:3	.	0,73,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,47,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:193:C:0:G:0:T:4:N:0:O:0	.	2,60,2,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:0:T:2:N:0:O:2	.	1,49,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:2:G:0:T:98:N:0:O:9	.	0,72,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:0:C:5:G:0:T:96:N:0:O:1	.	0,54,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:104:C:0:G:4:T:0:N:0:O:1	.	4,32,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:75:G:0:T:5:N:0:O:1	.	0,20,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:82:G:0:T:3:N:0:O:0	.	0,20,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28863	C	G	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:72:G:3:T:0:N:0:O:28	.	0,54,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:118:T:0:N:0:O:0	.	3,12,0,109	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:65:G:1:T:2:N:0:O:4	.	0,15,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:105:G:0:T:5:N:0:O:0	.	0,81,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:102:T:0:N:0:O:0	.	3,40,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	2,51,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29132	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:91:T:2:N:0:O:1	.	0,44,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	1,56,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0379746835443038	.	A:0:C:151:G:0:T:6:N:0:O:1	.	1,61,5,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:47:C:0:G:1:T:0:N:0:O:3	.	0,4,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:116:C:0:G:3:T:0:N:0:O:3	.	3,22,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0390625	.	A:5:C:0:G:114:T:0:N:0:O:9	.	5,26,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:81:T:0:N:0:O:5	.	2,27,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:2:T:0:N:0:O:1	.	2,27,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00096	artic-pipeline	NB07	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	305	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	7030	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	126	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	7031	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	126	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00096	artic-pipeline	NB07	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	97	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	0,3,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	19	.	20	.	0.9473684210526315	.	A:0:C:0:G:0:T:18:N:0:O:1	.	3,4,15,15	70.0	1419.4	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:3:G:0:T:83:N:0:O:0	.	0,44,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:97:N:0:O:2	.	1,18,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	794	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	0,53,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	137	.	20	.	0.9927007299270073	.	A:0:C:0:G:0:T:136:N:0:O:1	.	82,83,54,54	70.0	1440.4	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	1,51,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:2:G:0:T:62:N:0:O:0	.	0,57,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:65:C:2:G:0:T:0:N:0:O:0	.	2,45,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:33:C:0:G:1:T:0:N:0:O:2	.	1,6,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	1702	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	1,41,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,55,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.03937007874015748	.	A:5:C:0:G:122:T:0:N:0:O:0	.	5,28,0,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	0,22,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:0:C:3:G:0:T:147:N:0:O:3	.	0,91,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:158:C:4:G:0:T:0:N:0:O:0	.	4,79,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	2899	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,49,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:2:G:0:T:0:N:0:O:0	.	1,27,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	2956	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:121:C:0:G:3:T:1:N:0:O:7	.	1,49,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	128	.	20	.	0.65625	.	A:0:C:0:G:0:T:84:N:0:O:44	.	34,78,50,50	188.68	1290.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:0:G:91:T:3:N:0:O:1	.	0,21,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:105:N:0:O:4	.	0,46,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:131:G:0:T:0:N:0:O:0	.	0,49,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:0:G:71:T:2:N:0:O:10	.	0,50,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:83:C:0:G:3:T:0:N:0:O:5	.	3,11,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:94:C:0:G:3:T:0:N:0:O:3	.	3,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:104:N:0:O:0	.	0,60,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:2:G:0:T:0:N:0:O:0	.	0,49,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:2:C:0:G:46:T:0:N:0:O:0	.	2,19,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:45:C:0:G:0:T:1:N:0:O:3	.	1,18,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	91	.	20	.	0.04395604395604396	.	A:0:C:87:G:0:T:4:N:0:O:0	.	0,69,4,22	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:132:G:0:T:3:N:0:O:1	.	2,80,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	3791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:110:T:0:N:0:O:1	.	3,52,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:84:T:0:N:0:O:0	.	0,43,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.07042253521126761	.	A:0:C:66:G:0:T:5:N:0:O:0	.	0,58,5,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	4071	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:99:G:0:T:0:N:0:O:3	.	0,46,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:92:G:0:T:3:N:0:O:3	.	0,63,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4113	C	T	T	14	new position at high frequency	Pass	False	True	True	267	.	20	.	0.9925093632958801	.	A:0:C:0:G:0:T:265:N:0:O:2	.	107,109,158,158	66.227	1356.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4174	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.015748031496062992	.	A:2:C:0:G:0:T:90:N:0:O:35	.	1,75,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	0,21,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4206	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:85:G:0:T:0:N:0:O:3	.	0,21,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:0:G:175:T:5:N:0:O:15	.	0,134,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.04487179487179487	.	A:0:C:0:G:124:T:7:N:0:O:25	.	0,132,7,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:3:G:0:T:128:N:0:O:6	.	0,73,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:133:N:0:O:0	.	0,53,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	4984	A	G	A	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.02843601895734597	.	A:205:C:0:G:6:T:0:N:0:O:0	.	6,93,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,43,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:118:T:0:N:0:O:1	.	2,75,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:71:G:0:T:4:N:0:O:0	.	0,64,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:3:G:0:T:81:N:0:O:0	.	0,55,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:91:N:0:O:6	.	0,50,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:107:G:0:T:3:N:0:O:1	.	0,85,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.09615384615384616	.	A:0:C:92:G:0:T:10:N:0:O:2	.	1,76,9,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:85:G:0:T:5:N:0:O:4	.	0,64,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6309	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:79:T:0:N:0:O:8	.	2,26,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6317	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:89:G:0:T:0:N:0:O:2	.	1,64,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:90:G:1:T:2:N:0:O:6	.	0,74,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,53,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:1:C:0:G:3:T:96:N:0:O:5	.	0,58,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	1,57,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:184:C:1:G:4:T:1:N:0:O:6	.	4,76,0,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.02631578947368421	.	A:0:C:177:G:0:T:5:N:0:O:8	.	0,114,5,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	7399	A	C	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:3:G:0:T:0:N:0:O:0	.	3,61,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:4:C:0:G:71:T:0:N:0:O:0	.	4,17,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:90:N:0:O:3	.	0,46,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,20,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,57,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	8590	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,35,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:102:N:0:O:0	.	0,52,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:4:C:2:G:66:T:0:N:0:O:2	.	4,9,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:0:T:87:N:0:O:4	.	4,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:0:G:2:T:98:N:0:O:4	.	0,54,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	9478	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:0:G:2:T:98:N:0:O:5	.	2,49,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:0:G:74:T:0:N:0:O:0	.	3,15,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:89:G:0:T:3:N:0:O:11	.	3,28,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:66:N:0:O:5	.	0,52,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.028089887640449437	.	A:0:C:5:G:0:T:171:N:0:O:2	.	0,111,5,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10226	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:130:G:0:T:0:N:0:O:2	.	0,62,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,38,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:1:N:0:O:0	.	2,25,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0228310502283105	.	A:5:C:0:G:211:T:0:N:0:O:3	.	5,75,0,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:97:G:0:T:3:N:0:O:2	.	0,68,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,36,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10657	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:122:C:0:G:3:T:0:N:0:O:0	.	3,59,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:102:T:3:N:0:O:0	.	3,58,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:101:G:0:T:3:N:0:O:0	.	0,61,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.059322033898305086	.	A:0:C:0:G:7:T:103:N:0:O:8	.	0,57,7,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:89:G:0:T:0:N:0:O:13	.	2,54,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	11074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.011299435028248588	.	A:0:C:91:G:0:T:2:N:0:O:84	.	1,173,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	11082	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:20:N:0:O:0	.	0,6,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:97:C:0:G:0:T:3:N:0:O:1	.	2,57,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	11916	C	T	T	17	accept high frequency variant	Pass	False	True	True	267	.	20	.	0.9925093632958801	.	A:0:C:0:G:0:T:265:N:0:O:2	.	151,153,114,114	70.0	2086.5	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:75:T:0:N:0:O:22	.	0,79,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	12420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:101:G:0:T:4:N:0:O:15	.	0,74,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:4:C:0:G:82:T:0:N:0:O:3	.	4,23,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	12600	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,30,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.09722222222222222	.	A:0:C:63:G:0:T:7:N:0:O:2	.	0,54,7,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:115:C:0:G:4:T:0:N:0:O:7	.	4,56,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:81:T:0:N:0:O:3	.	3,23,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.14814814814814814	.	A:0:C:68:G:0:T:12:N:0:O:1	.	0,62,12,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:90:T:0:N:0:O:13	.	4,37,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	13688	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:134:C:0:G:3:T:0:N:0:O:1	.	2,57,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:105:T:1:N:0:O:6	.	4,30,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,40,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:90:T:0:N:0:O:7	.	2,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:93:G:0:T:2:N:0:O:6	.	0,87,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	99	.	20	.	0.98989898989899	.	A:0:C:1:G:0:T:98:N:0:O:0	.	66,67,32,32	209.237	1271.5	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,25,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,39,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	14724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:87:G:0:T:2:N:0:O:4	.	0,76,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	14978	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:113:T:0:N:0:O:0	.	1,51,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:100:G:0:T:4:N:0:O:11	.	0,58,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:5:C:0:G:82:T:0:N:0:O:1	.	5,20,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:99:G:0:T:3:N:0:O:0	.	1,64,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	15588	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:125:G:0:T:3:N:0:O:1	.	0,83,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.1346153846153846	.	A:0:C:45:G:0:T:7:N:0:O:0	.	0,22,7,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:0:C:97:G:0:T:5:N:0:O:3	.	0,51,5,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.07526881720430108	.	A:0:C:0:G:7:T:86:N:0:O:0	.	0,43,7,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	16988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:113:T:0:N:0:O:0	.	1,32,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	16989	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,36,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.02617801047120419	.	A:5:C:0:G:183:T:0:N:0:O:3	.	5,33,0,158	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:91:G:0:T:5:N:0:O:0	.	0,51,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:0:C:78:G:0:T:5:N:0:O:4	.	0,35,5,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:70:G:0:T:2:N:0:O:0	.	0,52,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:94:C:0:G:0:T:2:N:0:O:9	.	0,50,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07017543859649122	.	A:8:C:0:G:106:T:0:N:0:O:0	.	0,74,8,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:75:T:0:N:0:O:1	.	2,18,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	18998	C	T	T	17	accept high frequency variant	Pass	False	True	True	159	.	20	.	0.9685534591194969	.	A:0:C:2:G:0:T:154:N:0:O:3	.	72,75,82,84	210.0	1323.2	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	19281	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:46:N:0:O:1	.	0,28,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19288	G	C	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:42:T:0:N:0:O:0	.	1,24,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19298	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:39:C:0:G:1:T:0:N:0:O:2	.	1,25,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19300	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:40:T:0:N:0:O:0	.	1,27,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19305	T	A	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:0:T:39:N:0:O:1	.	0,29,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19309	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:0:T:1:N:0:O:0	.	0,23,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19328	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:39:G:0:T:1:N:0:O:9	.	0,30,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	19333	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:46:T:0:N:0:O:0	.	1,24,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,27,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19387	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,21,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19401	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:42:N:0:O:1	.	0,27,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,25,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19457	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:38:T:0:N:0:O:0	.	0,26,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,18,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	19492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,18,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	1,15,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19495	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:44:G:0:T:1:N:0:O:0	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19548	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	1,24,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19558	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:0:T:1:N:0:O:1	.	1,23,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.029585798816568046	.	A:5:C:0:G:0:T:132:N:0:O:32	.	0,70,5,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:101:C:0:G:0:T:5:N:0:O:0	.	0,55,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:87:N:0:O:5	.	0,53,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19798	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:0:T:2:N:0:O:0	.	2,48,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	1,32,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:0:G:3:T:71:N:0:O:2	.	0,33,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,46,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:3:T:104:N:0:O:0	.	3,50,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	20468	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.09259259259259259	.	A:0:C:95:G:0:T:10:N:0:O:3	.	6,59,4,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:137:C:0:G:3:T:0:N:0:O:2	.	3,87,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	2,46,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	20792	C	A	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.01680672268907563	.	A:2:C:96:G:0:T:1:N:0:O:20	.	1,69,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,42,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:2:T:0:N:0:O:0	.	0,2,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:91:T:0:N:0:O:10	.	0,10,2,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:0:C:0:G:63:T:5:N:0:O:8	.	0,57,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,54,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:0:T:30:N:0:O:20	.	0,46,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:101:G:0:T:3:N:0:O:0	.	0,64,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:100:T:0:N:0:O:4	.	4,28,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	22016	T	A	A	14	new position at high frequency	Pass	False	True	True	164	.	20	.	0.9817073170731707	.	A:161:C:0:G:0:T:1:N:0:O:2	.	82,85,79,79	486.227	3045.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:0:G:5:T:111:N:0:O:0	.	5,40,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:133:G:0:T:3:N:0:O:4	.	1,96,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:105:T:3:N:0:O:0	.	1,74,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	22638	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.04929577464788732	.	A:7:C:0:G:135:T:0:N:0:O:0	.	3,51,4,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	22663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:128:G:0:T:3:N:0:O:2	.	3,23,0,110	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,52,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9338235294117647	.	A:0:C:0:G:127:T:0:N:0:O:9	.	70,79,57,57	209.237	1494.2	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:2:T:0:N:0:O:2	.	2,32,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:83:T:0:N:0:O:8	.	3,25,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	2,15,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23836	T	A	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:1:T:63:N:0:O:0	.	2,15,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.10588235294117647	.	A:0:C:76:G:0:T:9:N:0:O:0	.	0,65,9,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:1:C:85:G:0:T:2:N:0:O:7	.	1,51,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23900	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:87:T:1:N:0:O:2	.	2,15,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:134:C:0:G:0:T:3:N:0:O:0	.	3,55,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:0:T:71:N:0:O:0	.	3,15,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	23997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:93:G:0:T:3:N:0:O:2	.	0,61,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:75:G:0:T:3:N:0:O:0	.	0,56,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:65:G:0:T:3:N:0:O:7	.	0,66,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:87:T:0:N:0:O:0	.	3,20,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:5:C:0:G:81:T:0:N:0:O:2	.	5,16,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24420	A	G	A	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.023809523809523808	.	A:163:C:0:G:4:T:0:N:0:O:1	.	4,61,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:2:G:0:T:0:N:0:O:0	.	2,45,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:95:G:0:T:4:N:0:O:1	.	0,67,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:31:N:0:O:2	.	1,27,0,7	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,2,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25262	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:96:G:0:T:2:N:0:O:9	.	0,58,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:90:C:0:G:2:T:0:N:0:O:6	.	2,29,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,34,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.057692307692307696	.	A:97:C:0:G:0:T:6:N:0:O:1	.	6,49,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25513	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:1:C:75:G:0:T:2:N:0:O:1	.	1,40,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	1.0	.	A:0:C:0:G:0:T:117:N:0:O:0	.	54,54,63,63	209.237	1902.2	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.07272727272727272	.	A:48:C:4:G:0:T:0:N:0:O:3	.	1,34,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	0,56,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25840	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,64,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:76:C:0:G:0:T:3:N:0:O:2	.	0,55,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:71:N:0:O:0	.	0,46,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:83:G:0:T:3:N:0:O:2	.	1,51,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.015873015873015872	.	A:0:C:91:G:0:T:2:N:0:O:33	.	0,121,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,50,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:99:T:0:N:0:O:1	.	3,53,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:88:T:0:N:0:O:0	.	3,40,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.031088082901554404	.	A:0:C:187:G:0:T:6:N:0:O:0	.	0,150,6,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.035555555555555556	.	A:0:C:8:G:0:T:217:N:0:O:0	.	0,151,8,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:0:T:2:N:0:O:3	.	2,23,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.07865168539325842	.	A:7:C:0:G:81:T:0:N:0:O:1	.	7,11,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:0:C:72:G:0:T:4:N:0:O:1	.	0,55,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:84:T:0:N:0:O:1	.	5,28,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.09876543209876543	.	A:0:C:73:G:0:T:8:N:0:O:0	.	0,61,8,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27108	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:0:G:2:T:76:N:0:O:1	.	0,47,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27323	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:107:G:0:T:4:N:0:O:0	.	0,68,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:0:T:93:N:0:O:0	.	0,58,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27493	C	T	C	16	ignore low frequency variant	Pass	False	False	True	269	.	20	.	0.022304832713754646	.	A:0:C:261:G:0:T:6:N:0:O:2	.	4,157,2,112	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:0:G:2:T:0:N:0:O:0	.	2,37,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:91:G:0:T:0:N:0:O:0	.	2,59,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.017241379310344827	.	A:124:C:0:G:0:T:3:N:0:O:47	.	3,128,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:86:C:3:G:0:T:0:N:0:O:0	.	3,48,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:44:C:0:G:2:T:0:N:0:O:1	.	0,5,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:3:C:0:G:54:T:0:N:0:O:5	.	2,16,1,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	27903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:79:G:0:T:2:N:0:O:12	.	0,63,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:1:T:49:N:0:O:0	.	1,49,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:0:T:2:N:0:O:1	.	2,22,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:68:G:0:T:3:N:0:O:12	.	1,25,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:116:G:0:T:3:N:0:O:7	.	0,62,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.06	.	A:0:C:6:G:0:T:94:N:0:O:0	.	0,60,6,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28678	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:84:N:0:O:2	.	0,54,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:68:G:0:T:4:N:0:O:3	.	0,26,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	28926	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,25,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:146:G:0:T:3:N:0:O:0	.	0,86,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29056	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,5,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:79:T:0:N:0:O:1	.	3,5,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:119:N:0:O:0	.	0,58,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:58:G:0:T:2:N:0:O:0	.	1,25,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:85:N:0:O:3	.	0,55,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.05263157894736842	.	A:36:C:0:G:2:T:0:N:0:O:0	.	0,4,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0898876404494382	.	A:79:C:0:G:8:T:0:N:0:O:2	.	8,26,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:7:C:1:G:78:T:0:N:0:O:15	.	7,35,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:140:C:4:G:3:T:0:N:0:O:2	.	0,87,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	29540	G	A	A	17	accept high frequency variant	Pass	False	True	True	161	.	20	.	0.9875776397515528	.	A:159:C:0:G:0:T:0:N:0:O:2	.	82,84,77,77	489.237	1124.8	.	.	.	.	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	29614	C	T	C	12	misc mixed variant	Check	False	False	True	178	.	20	.	0.29213483146067415	.	A:0:C:120:G:0:T:52:N:0:O:6	.	19,80,33,98	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	29733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,20,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	29784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:44:G:0:T:1:N:0:O:0	.	0,24,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00097	artic-pipeline	NB08	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:0:C:46:G:2:T:0:N:0:O:0	.	2,10,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00097	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	84	C	T	N	12	misc mixed variant	Check	False	False	False	32	.	20	.	0.375	.	A:0:C:17:G:0:T:12:N:0:O:3	.	2,6,10,26	.	122.7	.	.	.	mismatch(n+s)	mixed position	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	91	G	T	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:28:T:1:N:0:O:0	.	1,4,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	185	G	T	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:0:G:19:T:1:N:0:O:0	.	0,1,1,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	345	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:130:N:0:O:1	.	0,58,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:4:G:0:T:100:N:0:O:0	.	0,51,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	111	.	20	.	0.9819819819819819	.	A:109:C:0:G:0:T:0:N:0:O:2	.	19,21,90,90	70.0	2839.3	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	2,58,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:66:T:0:N:0:O:14	.	3,12,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:108:G:0:T:4:N:0:O:2	.	0,56,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:57:C:0:G:2:T:0:N:0:O:6	.	0,16,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,1,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,5,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:0:G:78:T:2:N:0:O:2	.	0,34,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:0:G:2:T:0:N:0:O:1	.	0,7,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,57,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:8:C:0:G:92:T:0:N:0:O:0	.	8,23,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	2406	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:88:C:0:G:2:T:0:N:0:O:14	.	0,11,2,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:87:T:0:N:0:O:3	.	0,28,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.02857142857142857	.	A:0:C:5:G:0:T:167:N:0:O:3	.	0,108,5,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	2626	G	A	G	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.02976190476190476	.	A:5:C:0:G:162:T:0:N:0:O:1	.	5,82,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.028735632183908046	.	A:169:C:5:G:0:T:0:N:0:O:0	.	5,82,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:113:G:0:T:3:N:0:O:3	.	0,102,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3033	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:90:G:0:T:2:N:0:O:5	.	0,58,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:3:T:0:N:0:O:1	.	3,31,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.029197080291970802	.	A:4:C:133:G:0:T:0:N:0:O:0	.	0,59,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:0:G:76:T:3:N:0:O:10	.	0,59,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	205	.	20	.	0.9512195121951219	.	A:0:C:2:G:2:T:195:N:0:O:6	.	67,75,128,130	196.449	909.2	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:92:G:0:T:3:N:0:O:1	.	0,50,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:76:G:0:T:3:N:0:O:1	.	0,47,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	96	.	20	.	0.041666666666666664	.	A:0:C:92:G:0:T:4:N:0:O:0	.	0,75,4,21	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3786	A	G	N	2	allele in negative control	Alarm	False	False	False	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	3,46,0,63	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:77:N:0:O:16	.	0,54,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:81:T:2:N:0:O:8	.	0,44,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:80:T:0:N:0:O:0	.	0,42,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:77:G:1:T:2:N:0:O:0	.	0,72,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	4169	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:108:G:0:T:3:N:0:O:1	.	1,55,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:41:N:0:O:1	.	0,38,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.050505050505050504	.	A:0:C:0:G:180:T:10:N:0:O:8	.	0,134,10,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.030456852791878174	.	A:0:C:179:G:0:T:6:N:0:O:12	.	0,106,6,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:117:N:0:O:6	.	0,87,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:0:G:4:T:115:N:0:O:3	.	0,67,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,27,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.10294117647058823	.	A:0:C:60:G:0:T:7:N:0:O:1	.	0,58,7,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:119:N:0:O:3	.	0,63,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	0,50,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,21,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	3,44,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	5947	T	A	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:0:T:126:N:0:O:3	.	3,79,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6032	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:111:T:0:N:0:O:0	.	3,51,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.9477611940298507	.	A:0:C:0:G:0:T:127:N:0:O:7	.	72,79,55,55	70.0	1057.3	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	0,68,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:138:G:0:T:3:N:0:O:6	.	0,101,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6747	T	A	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:0:T:37:N:0:O:5	.	0,15,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.12	.	A:21:C:0:G:3:T:0:N:0:O:1	.	3,10,0,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,10,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6890	T	G	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:0:G:1:T:19:N:0:O:0	.	1,9,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6892	T	A	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:0:T:20:N:0:O:1	.	1,9,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6893	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	1,7,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6898	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:21:C:0:G:1:T:0:N:0:O:1	.	1,7,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6960	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.13636363636363635	.	A:0:C:0:G:19:T:3:N:0:O:0	.	0,8,3,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	6999	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,9,0,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7004	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,5,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7106	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,25,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7108	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	1,20,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7164	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:48:G:0:T:1:N:0:O:0	.	1,23,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	7165	C	A	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:42:G:0:T:0:N:0:O:2	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:40:N:0:O:1	.	1,25,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7186	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:1:T:0:N:0:O:0	.	1,20,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7212	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:44:T:1:N:0:O:0	.	0,17,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7228	T	G	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:1:T:37:N:0:O:1	.	0,12,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:38:T:0:N:0:O:0	.	1,15,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7252	G	T	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:46:T:1:N:0:O:0	.	0,22,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:0:G:1:T:35:N:0:O:0	.	1,9,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7310	T	A	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:0:T:43:N:0:O:0	.	0,13,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:6:C:0:G:74:T:1:N:0:O:0	.	6,12,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:72:T:0:N:0:O:2	.	2,15,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7598	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:95:N:0:O:2	.	1,54,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	2,43,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:84:C:0:G:2:T:0:N:0:O:2	.	2,32,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:0:T:2:N:0:O:0	.	2,50,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7898	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:0:G:95:T:3:N:0:O:1	.	1,43,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,33,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:2:G:0:T:41:N:0:O:0	.	2,40,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	128	.	20	.	1.0	.	A:0:C:0:G:0:T:128:N:0:O:0	.	62,62,66,66	209.237	1106.1	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.12941176470588237	.	A:11:C:0:G:71:T:0:N:0:O:3	.	11,17,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	8950	C	T	T	17	accept high frequency variant	Pass	False	True	True	278	.	20	.	0.9712230215827338	.	A:1:C:0:G:0:T:270:N:0:O:7	.	127,135,143,143	70.0	1403.6	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:104:T:0:N:0:O:3	.	3,25,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:0:T:77:N:0:O:0	.	1,25,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:0:T:86:N:0:O:3	.	3,24,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9521	C	T	N	12	misc mixed variant	Check	False	False	False	109	.	20	.	0.41284403669724773	.	A:0:C:62:G:0:T:45:N:0:O:2	.	27,62,18,47	.	30.2	.	.	.	mismatch(n+s)	mixed position	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:69:G:0:T:2:N:0:O:2	.	0,61,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9561	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,26,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:23:G:0:T:1:N:0:O:13	.	1,37,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9724	C	A	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:41:G:0:T:0:N:0:O:1	.	0,23,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9759	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	1,19,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9791	G	T	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:32:T:1:N:0:O:0	.	0,19,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9801	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.047619047619047616	.	A:0:C:40:G:0:T:2:N:0:O:0	.	1,23,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	9802	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	1,21,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	10010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:92:G:0:T:3:N:0:O:2	.	0,68,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	10202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:65:G:0:T:2:N:0:O:4	.	0,53,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,23,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:90:N:0:O:6	.	0,44,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	236	.	20	.	0.0211864406779661	.	A:5:C:0:G:229:T:0:N:0:O:2	.	5,96,0,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:104:G:0:T:4:N:0:O:0	.	0,66,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	10995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:85:C:0:G:0:T:2:N:0:O:2	.	0,24,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:99:C:0:G:0:T:4:N:0:O:2	.	4,64,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	0,62,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	11966	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:122:T:0:N:0:O:0	.	3,50,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.018691588785046728	.	A:0:C:0:G:139:T:4:N:0:O:71	.	1,90,3,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:61:C:0:G:4:T:0:N:0:O:2	.	1,61,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	12014	G	T	G	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.018072289156626505	.	A:0:C:0:G:134:T:3:N:0:O:29	.	3,92,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.01639344262295082	.	A:0:C:94:G:0:T:2:N:0:O:26	.	0,93,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:77:T:0:N:0:O:17	.	0,78,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:82:T:0:N:0:O:3	.	5,25,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	130	.	20	.	0.9769230769230769	.	A:127:C:0:G:0:T:0:N:0:O:3	.	66,69,61,61	350.0	966.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:2:G:0:T:62:N:0:O:4	.	0,23,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:0:C:80:G:0:T:6:N:0:O:2	.	0,69,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.05	.	A:111:C:0:G:6:T:0:N:0:O:3	.	6,40,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:116:C:0:G:3:T:0:N:0:O:1	.	3,43,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:96:G:0:T:3:N:0:O:1	.	0,53,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:122:G:0:T:3:N:0:O:7	.	0,90,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:0:T:127:N:0:O:15	.	3,91,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:77:G:0:T:5:N:0:O:4	.	0,75,5,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:93:T:0:N:0:O:9	.	3,42,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13491	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:96:G:0:T:0:N:0:O:0	.	2,55,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13492	C	A	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:77:G:0:T:0:N:0:O:0	.	2,54,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:90:G:0:T:0:N:0:O:11	.	3,55,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:104:C:0:G:3:T:0:N:0:O:0	.	3,51,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:0:C:148:G:0:T:4:N:0:O:0	.	0,78,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:116:T:0:N:0:O:1	.	3,37,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13884	A	G	A	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:168:C:0:G:4:T:0:N:0:O:0	.	2,79,2,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:48:C:0:G:1:T:0:N:0:O:2	.	0,5,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:91:G:0:T:0:N:0:O:1	.	0,66,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,48,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,35,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:95:G:0:T:3:N:0:O:1	.	0,66,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	14607	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:116:N:0:O:3	.	0,72,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.10309278350515463	.	A:10:C:0:G:86:T:0:N:0:O:1	.	10,29,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,30,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.07692307692307693	.	A:0:C:36:G:0:T:3:N:0:O:0	.	0,23,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,66,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:105:T:3:N:0:O:1	.	3,44,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:95:T:1:N:0:O:2	.	2,13,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:4:G:0:T:115:N:0:O:0	.	0,53,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:93:G:0:T:2:N:0:O:5	.	0,54,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:76:T:0:N:0:O:3	.	4,21,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:0:G:91:T:3:N:0:O:2	.	2,21,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:2:G:0:T:0:N:0:O:0	.	2,33,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.026595744680851064	.	A:5:C:0:G:175:T:0:N:0:O:8	.	5,39,0,149	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:74:C:0:G:3:T:0:N:0:O:1	.	3,12,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:0:T:74:N:0:O:0	.	2,11,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.06666666666666667	.	A:0:C:69:G:0:T:5:N:0:O:1	.	0,50,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	2,19,1,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,36,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,41,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:89:G:0:T:3:N:0:O:1	.	0,36,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:77:G:0:T:4:N:0:O:0	.	0,50,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:101:C:0:G:0:T:4:N:0:O:12	.	0,49,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07017543859649122	.	A:8:C:0:G:106:T:0:N:0:O:0	.	0,61,8,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17876	C	A	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:73:G:0:T:0:N:0:O:1	.	0,26,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:78:T:0:N:0:O:0	.	4,23,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:125:G:0:T:4:N:0:O:0	.	0,86,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:118:T:0:N:0:O:5	.	3,64,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	18735	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:94:C:2:G:0:T:0:N:0:O:7	.	0,62,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	106	.	20	.	0.9811320754716981	.	A:0:C:104:G:0:T:2:N:0:O:0	.	50,50,54,56	209.237	1424.7	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	18947	T	C	T	16	ignore low frequency variant	Pass	False	False	True	247	.	20	.	0.024291497975708502	.	A:0:C:6:G:0:T:235:N:0:O:6	.	0,146,6,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	18978	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.026490066225165563	.	A:146:C:0:G:4:T:0:N:0:O:1	.	4,57,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	19255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:143:G:0:T:3:N:0:O:1	.	1,76,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	19747	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:3:G:0:T:137:N:0:O:0	.	0,64,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	19839	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:122:N:0:O:0	.	0,65,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.05555555555555555	.	A:0:C:1:G:3:T:50:N:0:O:0	.	0,24,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:90:G:0:T:4:N:0:O:1	.	0,48,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,12,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	20238	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:98:T:0:N:0:O:2	.	2,49,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	20459	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:120:N:0:O:0	.	1,66,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	20645	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,61,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:109:T:0:N:0:O:11	.	3,79,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:102:C:0:G:4:T:0:N:0:O:2	.	4,25,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:111:T:0:N:0:O:0	.	4,34,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:0:G:2:T:0:N:0:O:0	.	0,2,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:96:T:0:N:0:O:6	.	0,14,2,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21107	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:81:N:0:O:1	.	0,20,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21151	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:33:T:0:N:0:O:0	.	0,24,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:0:G:29:T:1:N:0:O:0	.	0,25,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21234	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:29:G:0:T:1:N:0:O:3	.	1,24,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,27,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21362	A	C	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:23:C:1:G:0:T:0:N:0:O:1	.	0,20,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:80:T:0:N:0:O:2	.	3,15,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:1:G:0:T:76:N:0:O:15	.	0,70,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,59,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	22121	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:2:G:0:T:0:N:0:O:0	.	1,64,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	22995	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:99:G:0:T:3:N:0:O:1	.	2,33,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	1,4,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	23628	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	1,59,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:87:C:0:G:4:T:0:N:0:O:2	.	4,22,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	23836	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:1:T:75:N:0:O:0	.	2,22,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:0:C:82:G:0:T:6:N:0:O:0	.	0,65,6,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:129:C:0:G:0:T:4:N:0:O:0	.	4,62,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.07042253521126761	.	A:5:C:0:G:0:T:66:N:0:O:0	.	5,21,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	23998	A	C	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:83:C:3:G:0:T:0:N:0:O:0	.	0,64,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	1.0	.	A:0:C:0:G:0:T:127:N:0:O:0	.	59,59,68,68	210.0	702.4	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	24047	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:93:T:1:N:0:O:1	.	3,26,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	24053	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	3,25,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.07894736842105263	.	A:0:C:70:G:0:T:6:N:0:O:0	.	0,61,6,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24239	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:95:T:0:N:0:O:6	.	0,59,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:54:G:0:T:2:N:0:O:9	.	0,58,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:83:T:0:N:0:O:2	.	2,15,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:84:C:5:G:0:T:0:N:0:O:0	.	5,49,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,50,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	45	.	20	.	0.06666666666666667	.	A:0:C:3:G:0:T:42:N:0:O:0	.	3,37,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:107:C:0:G:0:T:5:N:0:O:0	.	5,33,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,38,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:90:T:2:N:0:O:5	.	0,31,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25515	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,39,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25666	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.017094017094017096	.	A:0:C:2:G:0:T:97:N:0:O:18	.	0,87,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25696	G	C	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:94:T:0:N:0:O:1	.	2,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:70:T:0:N:0:O:3	.	2,10,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.08955223880597014	.	A:58:C:6:G:0:T:0:N:0:O:3	.	1,36,5,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25831	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:83:G:0:T:3:N:0:O:3	.	0,66,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,63,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:69:C:0:G:1:T:2:N:0:O:1	.	0,53,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:76:C:0:G:2:T:0:N:0:O:1	.	2,19,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,53,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26135	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	1,81,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:90:G:0:T:4:N:0:O:0	.	0,68,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26520	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:2:N:0:O:0	.	2,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,63,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:89:T:0:N:0:O:0	.	3,26,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.07777777777777778	.	A:0:C:166:G:0:T:14:N:0:O:0	.	1,147,13,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.04433497536945813	.	A:0:C:9:G:0:T:194:N:0:O:0	.	0,152,9,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26561	T	A	T	16	ignore low frequency variant	Pass	False	False	True	252	.	20	.	0.015873015873015872	.	A:4:C:0:G:0:T:149:N:0:O:99	.	3,98,1,154	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:4:G:0:T:105:N:0:O:0	.	0,68,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:0:T:2:N:0:O:2	.	2,21,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:6:C:0:G:83:T:0:N:0:O:0	.	6,12,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	0.9724770642201835	.	A:0:C:106:G:0:T:1:N:0:O:2	.	65,67,41,42	261.243	1239.8	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	26731	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,69,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:94:G:0:T:4:N:0:O:1	.	0,70,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:80:N:0:O:7	.	0,70,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:99:G:0:T:3:N:0:O:1	.	0,67,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:110:N:0:O:2	.	0,63,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:95:C:0:G:0:T:3:N:0:O:1	.	0,61,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	27224	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,25,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:188:C:0:G:0:T:4:N:0:O:0	.	1,76,3,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	27644	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	1,58,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:77:G:0:T:0:N:0:O:4	.	2,46,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,37,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,33,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	129	.	20	.	1.0	.	A:0:C:129:G:0:T:0:N:0:O:0	.	79,79,50,50	210.0	1704.5	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	251	.	20	.	0.9960159362549801	.	A:0:C:250:G:0:T:1:N:0:O:0	.	120,120,130,131	134.466	1481.9	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:0:T:2:N:0:O:1	.	2,34,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28221	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,24,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:78:T:0:N:0:O:1	.	2,22,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28278	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:102:G:0:T:4:N:0:O:3	.	0,61,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:94:N:0:O:7	.	0,58,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:95:G:0:T:0:N:0:O:30	.	3,58,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28699	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:2:G:0:T:0:N:0:O:2	.	1,41,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:3:G:0:T:83:N:0:O:1	.	0,18,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	1.0	.	A:0:C:0:G:109:T:0:N:0:O:0	.	19,19,90,90	57.476	1587.8	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,22,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,82,2,18	.	228.6	.	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29046	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:72:G:0:T:2:N:0:O:3	.	0,55,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:1:G:0:T:0:N:0:O:0	.	1,5,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:84:T:0:N:0:O:2	.	2,5,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:89:T:0:N:0:O:2	.	1,49,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29171	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:135:G:0:T:3:N:0:O:2	.	2,59,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.0625	.	A:45:C:0:G:3:T:0:N:0:O:0	.	1,5,2,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:136:C:3:G:0:T:0:N:0:O:0	.	0,74,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29451	C	T	T	17	accept high frequency variant	Pass	False	True	True	157	.	20	.	0.9681528662420382	.	A:0:C:0:G:0:T:152:N:0:O:5	.	82,87,70,70	70.0	1885.0	.	.	.	.	.	.	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	29687	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:31:C:0:G:1:T:0:N:0:O:5	.	1,18,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	32	.	20	.	0.78125	.	A:1:C:0:G:25:T:0:N:0:O:6	.	15,20,10,12	162.625	203.2	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	29733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	0,21,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00098	artic-pipeline	NB09	MN908947.3	29744	G	C	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:21:T:0:N:0:O:0	.	1,8,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29745	G	C	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:23:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:1:T:0:N:0:O:0	.	1,19,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	29799	A	T	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:0:T:1:N:0:O:0	.	1,20,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00098	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	71	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:33:G:0:T:1:N:0:O:2	.	0,5,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:23:N:0:O:2	.	0,4,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	0,2,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:23:N:0:O:0	.	0,1,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	161	A	T	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:0:T:1:N:0:O:0	.	0,1,1,22	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	167	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	0,0,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	168	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,1,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	177	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:19:N:0:O:1	.	0,2,1,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	190	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,0,1,23	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	31	.	20	.	0.967741935483871	.	A:0:C:0:G:1:T:30:N:0:O:0	.	2,2,28,29	349.237	1221.7	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	260	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	0,1,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	287	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,4,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	319	G	T	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:31:T:1:N:0:O:0	.	1,3,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,47,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:2:G:0:T:97:N:0:O:6	.	2,17,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	836	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:0:T:89:N:0:O:2	.	1,45,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:89:G:0:T:4:N:0:O:0	.	0,48,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:1:T:2:N:0:O:0	.	0,47,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	137	.	20	.	1.0	.	A:0:C:0:G:0:T:137:N:0:O:0	.	72,72,65,65	280.0	1392.7	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:72:T:0:N:0:O:14	.	4,16,1,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	1140	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:76:C:0:G:2:T:0:N:0:O:1	.	0,33,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:92:G:0:T:5:N:0:O:2	.	0,49,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:82:T:0:N:0:O:1	.	3,42,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:85:N:0:O:3	.	0,42,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:4:G:0:T:109:N:0:O:0	.	0,53,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.06	.	A:46:C:0:G:3:T:0:N:0:O:1	.	2,4,1,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.07874015748031496	.	A:10:C:0:G:116:T:0:N:0:O:1	.	10,38,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	2454	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:82:N:0:O:2	.	0,43,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:76:T:0:N:0:O:3	.	0,12,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:145:C:0:G:3:T:0:N:0:O:3	.	3,63,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:92:G:0:T:3:N:0:O:4	.	0,86,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	128	.	20	.	0.5703125	.	A:0:C:0:G:0:T:73:N:0:O:55	.	42,97,31,31	261.846	1349.2	.	.	.	.	mixed position	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:85:T:3:N:0:O:13	.	0,68,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:0:G:3:T:81:N:0:O:1	.	3,19,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	3205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:77:C:0:G:3:T:0:N:0:O:3	.	3,39,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:42:C:0:G:0:T:1:N:0:O:3	.	1,22,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	83	.	20	.	0.0963855421686747	.	A:0:C:75:G:0:T:8:N:0:O:0	.	0,58,8,25	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	3638	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	1,25,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	0,53,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.028169014084507043	.	A:6:C:0:G:197:T:0:N:0:O:10	.	6,73,0,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:51:G:0:T:2:N:0:O:3	.	0,44,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.08108108108108109	.	A:0:C:0:G:160:T:15:N:0:O:10	.	0,125,15,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.01875	.	A:0:C:0:G:136:T:3:N:0:O:21	.	0,135,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.03289473684210526	.	A:5:C:0:G:147:T:0:N:0:O:0	.	0,122,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:1:C:3:G:0:T:119:N:0:O:2	.	0,71,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:117:C:0:G:0:T:3:N:0:O:4	.	0,49,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,70,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.14285714285714285	.	A:0:C:60:G:0:T:10:N:0:O:0	.	0,58,10,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	5866	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:92:G:0:T:2:N:0:O:6	.	0,65,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:102:G:0:T:4:N:0:O:2	.	0,71,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.08888888888888889	.	A:0:C:82:G:0:T:8:N:0:O:0	.	0,67,8,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:2:G:0:T:91:N:0:O:16	.	2,57,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:70:C:0:G:2:T:0:N:0:O:0	.	2,37,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6295	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:124:C:0:G:3:T:0:N:0:O:1	.	3,57,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:84:T:0:N:0:O:1	.	3,25,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,50,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:90:N:0:O:4	.	0,67,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6630	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	2,45,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:98:N:0:O:2	.	0,59,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6696	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:96:G:0:T:2:N:0:O:14	.	1,66,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.02631578947368421	.	A:0:C:177:G:0:T:5:N:0:O:8	.	0,109,5,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,31,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:81:C:0:G:0:T:6:N:0:O:1	.	0,55,6,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:96:T:0:N:0:O:0	.	3,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:86:T:1:N:0:O:0	.	4,15,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:71:G:0:T:2:N:0:O:24	.	1,78,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:0:C:76:G:0:T:4:N:0:O:5	.	0,54,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:99:N:0:O:7	.	0,54,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,49,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	8190	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:3:G:0:T:125:N:0:O:0	.	0,60,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	8487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:89:C:0:G:2:T:1:N:0:O:2	.	1,67,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:4:G:0:T:97:N:0:O:0	.	0,64,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	1,39,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	8848	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:80:C:0:G:2:T:0:N:0:O:1	.	2,36,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:4:C:0:G:63:T:0:N:0:O:1	.	3,4,1,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:76:N:0:O:0	.	2,36,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:0:T:82:N:0:O:6	.	1,38,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,61,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,50,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:0:C:0:G:113:T:5:N:0:O:0	.	0,61,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:94:G:0:T:2:N:0:O:9	.	0,85,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	9791	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:108:T:3:N:0:O:2	.	0,84,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	3,23,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:83:G:0:T:2:N:0:O:11	.	2,35,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	10305	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:0:G:0:T:3:N:0:O:0	.	3,54,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,28,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.021834061135371178	.	A:5:C:0:G:223:T:0:N:0:O:1	.	5,104,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.06542056074766354	.	A:0:C:98:G:0:T:7:N:0:O:2	.	0,67,7,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.022321428571428572	.	A:0:C:5:G:0:T:216:N:0:O:3	.	0,134,5,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.06542056074766354	.	A:0:C:99:G:0:T:7:N:0:O:1	.	0,61,7,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:0:C:0:G:5:T:100:N:0:O:2	.	0,54,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.05172413793103448	.	A:109:C:0:G:0:T:6:N:0:O:1	.	6,73,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.057692307692307696	.	A:0:C:98:G:0:T:6:N:0:O:0	.	0,74,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:86:T:0:N:0:O:0	.	0,56,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	12049	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:130:G:0:T:0:N:0:O:3	.	0,73,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	12053	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:106:G:0:T:3:N:0:O:6	.	0,62,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:75:T:0:N:0:O:1	.	3,19,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:85:G:0:T:0:N:0:O:4	.	0,48,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.1038961038961039	.	A:0:C:65:G:0:T:8:N:0:O:4	.	0,56,8,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	12847	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:1:G:0:T:108:N:0:O:2	.	0,54,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	2,39,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,53,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13409	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:85:G:0:T:4:N:0:O:0	.	0,81,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.07964601769911504	.	A:9:C:0:G:92:T:0:N:0:O:12	.	9,59,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,58,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:84:N:0:O:0	.	0,48,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:95:C:0:G:3:T:0:N:0:O:0	.	3,50,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:4:C:0:G:128:T:0:N:0:O:4	.	4,27,0,109	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:56:C:0:G:2:T:0:N:0:O:2	.	0,6,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:116:T:0:N:0:O:0	.	3,59,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	105	.	20	.	1.0	.	A:0:C:0:G:0:T:105:N:0:O:0	.	50,50,55,55	336.169	1386.9	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:102:T:0:N:0:O:1	.	3,34,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:4:G:0:T:74:N:0:O:2	.	0,69,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	15558	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:137:C:0:G:3:T:0:N:0:O:1	.	3,88,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	15923	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:112:C:0:G:3:T:0:N:0:O:2	.	3,63,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.08163265306122448	.	A:0:C:45:G:0:T:4:N:0:O:0	.	0,31,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	16093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	2,55,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16094	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:92:N:0:O:1	.	2,54,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:0:G:0:T:3:N:0:O:0	.	3,56,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:108:G:3:T:0:N:0:O:0	.	3,58,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:80:N:0:O:3	.	2,20,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16823	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:36:T:0:N:0:O:3	.	1,23,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:88:T:0:N:0:O:6	.	2,18,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:0:G:3:T:100:N:0:O:3	.	0,48,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:2:G:0:T:0:N:0:O:0	.	2,30,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,22,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:2:T:0:N:0:O:0	.	2,11,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:0:T:83:N:0:O:2	.	2,13,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:80:G:0:T:3:N:0:O:0	.	0,45,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:0:T:123:N:0:O:12	.	0,60,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.025906735751295335	.	A:0:C:187:G:0:T:5:N:0:O:1	.	0,89,5,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:67:G:0:T:4:N:0:O:0	.	0,42,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:95:C:0:G:0:T:3:N:0:O:13	.	0,40,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.05825242718446602	.	A:6:C:0:G:97:T:0:N:0:O:0	.	0,57,6,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,30,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,21,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	2,37,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,28,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	18988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:3:C:0:G:147:T:0:N:0:O:1	.	3,52,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19065	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,65,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19184	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:135:T:0:N:0:O:4	.	3,77,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:38:N:0:O:1	.	0,21,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	0,9,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19445	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	1,19,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19461	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:46:C:0:G:1:T:0:N:0:O:2	.	1,26,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19481	G	T	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:0:G:41:T:1:N:0:O:0	.	0,12,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:22:G:0:T:1:N:0:O:1	.	0,17,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	19488	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,24,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	19558	A	T	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:0:T:1:N:0:O:0	.	1,11,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19564	T	A	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:0:T:35:N:0:O:2	.	0,18,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19565	G	T	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:0:G:39:T:1:N:0:O:0	.	1,21,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0223463687150838	.	A:4:C:0:G:0:T:138:N:0:O:37	.	1,65,3,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.05405405405405406	.	A:104:C:0:G:0:T:6:N:0:O:1	.	2,61,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	20069	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:0:G:132:T:3:N:0:O:0	.	3,62,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	20579	T	G	T	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.022598870056497175	.	A:0:C:0:G:4:T:170:N:0:O:3	.	0,125,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	20678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:0:C:143:G:0:T:3:N:0:O:5	.	0,104,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,24,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:0:G:28:T:1:N:0:O:7	.	0,25,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.08333333333333333	.	A:0:C:33:G:0:T:3:N:0:O:0	.	0,16,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21192	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:44:N:0:O:1	.	0,20,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:28:T:0:N:0:O:1	.	1,9,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21276	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:0:T:1:N:0:O:0	.	0,17,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21297	C	G	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:49:G:1:T:0:N:0:O:2	.	0,19,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21306	C	G	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:1:T:0:N:0:O:0	.	0,17,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21334	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:46:T:0:N:0:O:0	.	1,16,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21350	G	T	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:43:T:1:N:0:O:0	.	0,18,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21360	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:1:G:0:T:0:N:0:O:0	.	1,20,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21364	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,6,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21365	C	A	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:36:G:0:T:0:N:0:O:1	.	0,18,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21379	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:37:N:0:O:2	.	0,23,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:82:G:0:T:2:N:0:O:9	.	1,76,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21421	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:112:C:0:G:4:T:0:N:0:O:22	.	4,63,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:101:C:0:G:0:T:4:N:0:O:1	.	2,35,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:84:T:0:N:0:O:2	.	4,17,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:2:C:0:G:0:T:91:N:0:O:21	.	0,91,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:0:T:87:N:0:O:0	.	0,74,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	22142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:3:G:1:T:143:N:0:O:0	.	1,80,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.024539877300613498	.	A:159:C:0:G:0:T:4:N:0:O:0	.	3,75,1,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	22559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.0	.	A:147:C:0:G:0:T:0:N:0:O:3	.	0,70,0,80	10.226	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	22572	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:93:G:0:T:2:N:0:O:16	.	1,85,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:120:G:0:T:3:N:0:O:15	.	0,116,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,66,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	142	.	20	.	0.9366197183098591	.	A:0:C:0:G:133:T:0:N:0:O:9	.	68,77,65,65	70.0	1539.4	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	2,17,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:109:N:0:O:2	.	0,63,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.09090909090909091	.	A:0:C:88:G:0:T:9:N:0:O:2	.	0,80,9,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	0,78,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:0:T:69:N:0:O:0	.	2,20,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:2:G:0:T:66:N:0:O:3	.	0,19,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	2,11,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:71:T:0:N:0:O:0	.	3,14,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:86:G:0:T:3:N:0:O:0	.	0,65,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:67:G:0:T:2:N:0:O:13	.	0,72,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:94:T:0:N:0:O:3	.	2,26,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:108:G:0:T:1:N:0:O:5	.	3,55,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:105:C:0:G:0:T:3:N:0:O:6	.	3,79,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24541	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:3:T:117:N:0:O:1	.	0,76,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24577	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:121:T:0:N:0:O:3	.	3,53,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:92:C:0:G:3:T:0:N:0:O:1	.	3,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24781	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	2,14,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24910	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:122:N:0:O:2	.	3,64,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	0,58,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:0:G:5:T:85:N:0:O:1	.	0,55,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	1,25,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	25101	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:2:G:0:T:0:N:0:O:0	.	2,40,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:84:C:0:G:3:T:0:N:0:O:6	.	3,19,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25374	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25375	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:0:T:98:N:0:O:2	.	2,38,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:101:N:0:O:0	.	3,35,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,62,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05128205128205128	.	A:111:C:0:G:0:T:6:N:0:O:0	.	6,48,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:82:G:0:T:2:N:0:O:5	.	2,58,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:66:G:0:T:2:N:0:O:2	.	0,59,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:0:G:0:T:114:N:0:O:0	.	46,46,68,68	280.0	1727.2	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	25604	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,50,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:93:G:0:T:0:N:0:O:9	.	3,55,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04878048780487805	.	A:6:C:77:G:0:T:0:N:0:O:40	.	6,45,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:1:G:0:T:0:N:0:O:0	.	0,34,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:97:G:0:T:3:N:0:O:3	.	0,74,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:91:G:0:T:4:N:0:O:2	.	2,55,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	25893	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:0:T:93:N:0:O:2	.	2,45,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:108:T:0:N:0:O:1	.	2,57,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:0:G:2:T:0:N:0:O:0	.	2,37,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:79:G:0:T:2:N:0:O:0	.	0,50,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.07086614173228346	.	A:0:C:82:G:0:T:9:N:0:O:36	.	0,88,9,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	0,41,1,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	0,50,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	1,37,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:96:T:0:N:0:O:0	.	3,26,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.02976190476190476	.	A:0:C:163:G:0:T:5:N:0:O:0	.	0,136,5,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:97:C:0:G:0:T:2:N:0:O:4	.	2,32,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.10126582278481013	.	A:8:C:0:G:71:T:0:N:0:O:0	.	8,12,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,65,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	0,72,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:1:G:97:T:0:N:0:O:0	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:84:T:0:N:0:O:0	.	5,24,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.11627906976744186	.	A:0:C:75:G:0:T:10:N:0:O:1	.	0,64,10,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:4:G:0:T:99:N:0:O:0	.	1,68,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	27583	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:126:T:0:N:0:O:0	.	3,79,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:89:G:0:T:0:N:0:O:3	.	2,57,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:113:T:0:N:0:O:0	.	3,35,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,35,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28147	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:78:G:0:T:0:N:0:O:13	.	2,77,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:0:G:2:T:62:N:0:O:0	.	2,63,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	2,62,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28150	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:0:T:82:N:0:O:0	.	2,59,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28151	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	2,59,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28201	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:125:G:0:T:3:N:0:O:1	.	0,83,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:82:C:0:G:0:T:2:N:0:O:2	.	2,39,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:4:C:0:G:75:T:0:N:0:O:0	.	4,41,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:94:G:0:T:0:N:0:O:10	.	3,75,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:70:G:0:T:2:N:0:O:7	.	0,37,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:70:G:0:T:2:N:0:O:3	.	1,45,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:117:G:0:T:3:N:0:O:2	.	1,66,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:76:G:0:T:2:N:0:O:3	.	0,27,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:0:C:44:G:0:T:2:N:0:O:0	.	0,24,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,25,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	29056	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:39:C:0:G:1:T:0:N:0:O:1	.	1,5,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:76:T:0:N:0:O:3	.	4,8,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	29108	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	2,17,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:37:C:0:G:1:T:0:N:0:O:2	.	0,2,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:84:T:0:N:0:O:0	.	5,23,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	29578	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:0:C:180:G:0:T:4:N:0:O:2	.	4,118,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	29774	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:66:G:0:T:2:N:0:O:0	.	0,36,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	29810	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:2:C:0:G:49:T:0:N:0:O:0	.	2,39,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00099	artic-pipeline	NB10	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00099	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	68	A	T	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:0:T:1:N:0:O:0	.	1,3,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	148	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,4,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,4,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	191	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:23:N:0:O:1	.	0,3,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	28	.	20	.	0.9642857142857143	.	A:0:C:0:G:0:T:27:N:0:O:1	.	3,4,24,24	279.237	1293.4	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:113:N:0:O:2	.	0,65,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:3:G:0:T:82:N:0:O:0	.	0,59,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1030	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:91:N:0:O:0	.	0,55,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	.	20	.	0.9855072463768116	.	A:0:C:0:G:0:T:136:N:0:O:2	.	71,73,65,65	140.0	1278.8	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:3:C:133:G:0:T:0:N:0:O:7	.	3,65,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.01818181818181818	.	A:0:C:47:G:0:T:1:N:0:O:7	.	0,41,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	1122	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:121:G:0:T:0:N:0:O:5	.	3,70,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:74:T:0:N:0:O:25	.	1,6,2,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	0,34,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:87:G:0:T:2:N:0:O:8	.	0,56,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1497	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:97:N:0:O:1	.	0,47,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:73:N:0:O:1	.	1,44,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:101:T:0:N:0:O:3	.	1,47,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:1:C:3:G:0:T:97:N:0:O:7	.	0,52,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:105:T:0:N:0:O:1	.	0,32,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2107	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:112:N:0:O:1	.	0,48,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.06542056074766354	.	A:7:C:0:G:100:T:0:N:0:O:0	.	7,34,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	2303	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:93:C:0:G:0:T:2:N:0:O:7	.	0,57,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:92:C:0:G:0:T:2:N:0:O:7	.	0,57,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:1:G:0:T:81:N:0:O:3	.	0,57,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:0:T:71:N:0:O:0	.	2,31,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:127:C:3:G:0:T:0:N:0:O:0	.	3,46,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	1,11,1,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.024242424242424242	.	A:161:C:4:G:0:T:0:N:0:O:0	.	4,92,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.037037037037037035	.	A:5:C:0:G:128:T:0:N:0:O:2	.	5,54,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.033783783783783786	.	A:137:C:0:G:5:T:0:N:0:O:6	.	5,80,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	129	.	20	.	0.6124031007751938	.	A:0:C:0:G:0:T:79:N:0:O:50	.	40,90,39,39	46.427	1403.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:83:T:2:N:0:O:0	.	0,24,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	3394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,36,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,40,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	74	.	20	.	0.06756756756756757	.	A:0:C:69:G:0:T:5:N:0:O:0	.	0,57,5,17	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	3739	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,64,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	0,44,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:4:C:1:G:0:T:119:N:0:O:6	.	4,61,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,62,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:42:G:0:T:1:N:0:O:3	.	0,32,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.035897435897435895	.	A:0:C:0:G:174:T:7:N:0:O:14	.	0,129,7,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:0:C:0:G:125:T:3:N:0:O:24	.	0,130,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.02727272727272727	.	A:6:C:0:G:214:T:0:N:0:O:0	.	0,89,6,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.02857142857142857	.	A:0:C:192:G:0:T:6:N:0:O:12	.	0,94,6,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:117:C:0:G:0:T:3:N:0:O:8	.	0,57,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:85:G:0:T:4:N:0:O:3	.	0,58,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	5161	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:95:N:0:O:4	.	0,54,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.022935779816513763	.	A:0:C:213:G:0:T:5:N:0:O:0	.	0,139,5,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:2:G:0:T:56:N:0:O:0	.	0,51,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.10126582278481013	.	A:0:C:70:G:0:T:8:N:0:O:1	.	0,66,8,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:94:N:0:O:3	.	0,54,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:100:N:0:O:4	.	3,65,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	5852	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:97:C:0:G:0:T:3:N:0:O:1	.	3,58,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:0:C:77:G:0:T:7:N:0:O:0	.	0,67,7,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:91:N:0:O:11	.	2,59,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6261	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:0:T:2:N:0:O:0	.	0,67,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,59,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6632	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,28,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,70,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:0:C:196:G:0:T:5:N:0:O:6	.	0,135,5,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:5:C:0:G:92:T:0:N:0:O:0	.	5,40,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6895	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:95:N:0:O:2	.	0,32,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:87:N:0:O:2	.	2,37,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:87:C:0:G:0:T:5:N:0:O:1	.	0,68,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	7330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	2,40,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:85:T:0:N:0:O:0	.	5,23,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	7606	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:0:T:3:N:0:O:0	.	3,56,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:82:G:0:T:2:N:0:O:10	.	0,63,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	7689	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:122:N:0:O:0	.	1,58,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:109:G:0:T:4:N:0:O:0	.	0,54,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:90:N:0:O:2	.	0,48,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:0:C:5:G:0:T:112:N:0:O:0	.	0,67,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	8606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.015625	.	A:0:C:83:G:0:T:2:N:0:O:43	.	2,109,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	8676	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:95:T:3:N:0:O:3	.	3,50,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:68:G:0:T:2:N:0:O:3	.	1,12,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.06493506493506493	.	A:5:C:1:G:65:T:0:N:0:O:6	.	4,13,1,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:0:T:99:N:0:O:6	.	4,60,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:99:T:0:N:0:O:0	.	4,43,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	9313	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:108:C:0:G:3:T:0:N:0:O:6	.	3,41,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:0:G:126:T:3:N:0:O:0	.	0,60,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	9798	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:108:G:0:T:3:N:0:O:0	.	0,88,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	9953	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:103:T:3:N:0:O:1	.	3,55,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,27,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:90:G:0:T:2:N:0:O:13	.	2,39,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	10010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,71,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	2,29,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.08035714285714286	.	A:0:C:102:G:0:T:9:N:0:O:1	.	0,63,9,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:46:N:0:O:1	.	1,44,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.09302325581395349	.	A:0:C:78:G:0:T:8:N:0:O:0	.	0,48,8,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.0673076923076923	.	A:0:C:0:G:7:T:94:N:0:O:3	.	0,48,7,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:98:N:0:O:0	.	2,50,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:104:C:0:G:0:T:3:N:0:O:1	.	3,66,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:108:G:0:T:4:N:0:O:0	.	0,97,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	2,72,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	11841	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	3,85,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	11916	C	T	T	17	accept high frequency variant	Pass	False	True	True	264	.	20	.	0.9924242424242424	.	A:0:C:0:G:0:T:262:N:0:O:2	.	169,171,93,93	69.237	1760.0	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	11962	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:86:G:0:T:2:N:0:O:3	.	0,61,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:73:G:0:T:4:N:0:O:18	.	0,74,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.050359712230215826	.	A:7:C:0:G:129:T:0:N:0:O:3	.	7,31,0,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:84:T:0:N:0:O:24	.	0,78,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12329	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:86:C:0:G:2:T:0:N:0:O:4	.	2,23,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:80:G:0:T:0:N:0:O:0	.	0,47,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:96:N:0:O:3	.	1,60,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.08860759493670886	.	A:0:C:72:G:0:T:7:N:0:O:0	.	0,52,7,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:121:C:0:G:3:T:0:N:0:O:1	.	3,54,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	12718	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:124:T:0:N:0:O:1	.	3,55,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13164	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	1,37,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:117:C:0:G:3:T:0:N:0:O:14	.	3,61,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:139:G:0:T:4:N:0:O:2	.	4,78,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	1,47,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:0:C:73:G:0:T:4:N:0:O:0	.	0,69,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:5:C:0:G:95:T:0:N:0:O:5	.	5,38,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:95:N:0:O:5	.	0,52,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:4:C:0:G:0:T:112:N:0:O:31	.	2,64,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:107:G:0:T:0:N:0:O:9	.	3,53,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:107:T:0:N:0:O:1	.	4,42,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:40:C:0:G:2:T:0:N:0:O:1	.	0,6,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:90:N:0:O:3	.	2,34,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	14054	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:113:N:0:O:7	.	0,69,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	3,41,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	14392	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,70,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	87	.	20	.	1.0	.	A:0:C:0:G:0:T:87:N:0:O:0	.	54,54,33,33	471.07	1217.3	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	14480	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,72,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	14547	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,41,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	14717	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:76:C:0:G:1:T:2:N:0:O:1	.	0,36,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:97:G:0:T:2:N:0:O:4	.	1,82,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:98:T:0:N:0:O:2	.	2,37,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	1,34,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15422	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:90:C:3:G:1:T:0:N:0:O:0	.	3,46,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:96:N:0:O:1	.	0,59,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:140:C:0:G:3:T:0:N:0:O:0	.	3,79,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15758	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:2:G:0:T:0:N:0:O:0	.	2,64,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:0:C:67:G:0:T:5:N:0:O:1	.	0,45,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,67,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:92:G:0:T:4:N:0:O:0	.	0,59,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:0:C:0:G:112:T:4:N:0:O:1	.	4,65,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:84:T:0:N:0:O:2	.	5,25,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	1,4,1,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16833	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:53:G:0:T:2:N:0:O:5	.	0,27,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	0,25,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0851063829787234	.	A:0:C:0:G:8:T:85:N:0:O:1	.	0,31,8,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:75:C:0:G:3:T:0:N:0:O:0	.	0,14,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16875	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	0,28,3,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17033	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:111:N:0:O:0	.	0,29,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:70:C:2:G:0:T:0:N:0:O:2	.	2,17,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:68:C:0:G:2:T:0:N:0:O:2	.	2,13,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:0:T:67:N:0:O:0	.	2,11,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:86:G:0:T:2:N:0:O:4	.	0,65,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:100:T:0:N:0:O:1	.	4,39,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,62,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:100:C:0:G:0:T:3:N:0:O:13	.	0,67,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:86:G:0:T:3:N:0:O:1	.	0,53,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:97:C:0:G:1:T:3:N:0:O:12	.	0,54,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05982905982905983	.	A:7:C:0:G:109:T:0:N:0:O:1	.	0,73,7,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,27,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:84:C:0:G:2:T:0:N:0:O:3	.	2,28,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:70:T:0:N:0:O:1	.	2,22,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	18119	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,37,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.03424657534246575	.	A:0:C:141:G:0:T:5:N:0:O:0	.	0,97,5,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,7,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:23:C:0:G:0:T:1:N:0:O:3	.	0,8,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19018	C	T	T	17	accept high frequency variant	Pass	False	True	True	160	.	20	.	0.9875	.	A:0:C:2:G:0:T:158:N:0:O:0	.	62,64,96,96	279.237	1792.7	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	19278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,15,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19317	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:27:G:0:T:1:N:0:O:2	.	1,13,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19318	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	1,14,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:25:T:0:N:0:O:1	.	0,8,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19341	T	A	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:0:T:33:N:0:O:0	.	0,17,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19360	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,15,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19383	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:23:N:0:O:2	.	0,13,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19384	G	C	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:28:T:0:N:0:O:0	.	0,15,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19415	T	A	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:0:T:27:N:0:O:0	.	0,13,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19425	T	G	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:1:T:36:N:0:O:0	.	0,17,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19449	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,16,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:30:N:0:O:1	.	0,16,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:24:T:0:N:0:O:1	.	1,10,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:90:N:0:O:5	.	0,52,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:94:G:0:T:4:N:0:O:0	.	0,43,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:0:G:4:T:96:N:0:O:1	.	4,57,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:86:C:0:G:2:T:0:N:0:O:4	.	2,39,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	20666	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:125:C:3:G:0:T:0:N:0:O:0	.	3,99,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:4:C:0:G:112:T:0:N:0:O:9	.	4,66,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:125:C:0:G:5:T:0:N:0:O:1	.	5,74,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:94:C:0:G:3:T:0:N:0:O:3	.	3,23,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,46,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:4:C:0:G:113:T:0:N:0:O:0	.	4,46,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.125	.	A:0:C:0:G:50:T:8:N:0:O:6	.	0,44,8,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:62:G:0:T:2:N:0:O:0	.	0,41,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21220	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:3:C:0:G:49:T:0:N:0:O:0	.	2,15,1,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	0,47,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:0:T:29:N:0:O:20	.	0,40,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:96:C:0:G:0:T:4:N:0:O:0	.	1,38,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:83:T:0:N:0:O:5	.	5,28,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:125:C:0:G:0:T:4:N:0:O:3	.	4,60,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:66:G:0:T:2:N:0:O:6	.	2,26,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	21754	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:0:G:130:T:3:N:0:O:2	.	0,85,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:100:N:0:O:0	.	3,38,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,74,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:122:G:0:T:3:N:0:O:19	.	0,128,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	0,43,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	23317	T	G	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:0:G:3:T:128:N:0:O:7	.	0,77,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	135	.	20	.	0.9703703703703703	.	A:0:C:0:G:131:T:0:N:0:O:4	.	67,71,64,64	280.0	1626.1	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:6:C:0:G:85:T:0:N:0:O:6	.	6,33,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.1509433962264151	.	A:0:C:89:G:0:T:16:N:0:O:1	.	0,75,16,31	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:4:G:0:T:110:N:0:O:0	.	0,76,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:0:T:95:N:0:O:0	.	3,26,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24325	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:0:G:0:T:2:N:0:O:0	.	0,36,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:104:T:0:N:0:O:1	.	3,35,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,58,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:87:C:3:G:0:T:0:N:0:O:1	.	3,45,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,5,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24678	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,21,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:100:G:0:T:3:N:0:O:2	.	0,83,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:87:G:1:T:2:N:0:O:2	.	1,73,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:85:C:0:G:3:T:0:N:0:O:1	.	3,40,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:1:C:0:G:107:T:5:N:0:O:1	.	5,58,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	39	.	20	.	0.05128205128205128	.	A:0:C:2:G:0:T:37:N:0:O:0	.	2,31,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	25219	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,55,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:95:C:3:G:0:T:1:N:0:O:1	.	3,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:75:C:0:G:4:T:0:N:0:O:8	.	4,29,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25370	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:0:T:88:N:0:O:0	.	2,56,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:90:G:0:T:2:N:0:O:5	.	0,84,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	123	.	20	.	1.0	.	A:0:C:0:G:0:T:123:N:0:O:0	.	73,73,50,50	210.0	2080.2	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	25593	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	1,38,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:109:G:0:T:1:N:0:O:11	.	2,76,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:5:C:89:G:0:T:0:N:0:O:44	.	4,57,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:56:C:4:G:0:T:0:N:0:O:2	.	0,37,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,50,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:1:C:89:G:0:T:3:N:0:O:1	.	0,65,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:68:C:0:G:0:T:2:N:0:O:2	.	0,54,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:71:C:0:G:3:T:0:N:0:O:3	.	3,22,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:100:C:0:G:4:T:0:N:0:O:2	.	4,58,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.020100502512562814	.	A:0:C:192:G:0:T:4:N:0:O:3	.	0,143,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:2:T:0:N:0:O:1	.	2,28,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	2,29,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.03289473684210526	.	A:144:C:0:G:5:T:0:N:0:O:3	.	1,95,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:69:N:0:O:2	.	2,39,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:95:C:0:G:0:T:4:N:0:O:3	.	4,36,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.1111111111111111	.	A:9:C:0:G:72:T:0:N:0:O:0	.	9,15,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:104:G:0:T:4:N:0:O:2	.	0,91,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.01951219512195122	.	A:0:C:195:G:0:T:4:N:0:O:6	.	1,189,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:82:C:0:G:4:T:0:N:0:O:1	.	4,31,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.08571428571428572	.	A:6:C:0:G:61:T:0:N:0:O:3	.	6,20,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:0:C:83:G:0:T:6:N:0:O:1	.	0,67,6,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	0,71,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27224	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	2,20,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27439	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,39,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,36,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:67:T:0:N:0:O:4	.	2,18,1,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,42,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,42,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:1:T:71:N:0:O:1	.	0,36,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	28343	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,50,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	28404	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:106:T:3:N:0:O:1	.	3,59,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:86:C:0:G:4:T:0:N:0:O:1	.	4,37,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,5,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:103:G:0:T:0:N:0:O:7	.	4,69,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:46:C:0:G:1:T:0:N:0:O:3	.	0,2,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	0,2,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	1,16,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:86:C:0:G:5:T:0:N:0:O:2	.	5,21,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:4:C:0:G:84:T:0:N:0:O:14	.	4,26,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00100	artic-pipeline	NB11	MN908947.3	16816	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	16817	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00100	artic-pipeline	NB11	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	66	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,6,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	67	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:20:N:0:O:1	.	0,4,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	71	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:28:G:0:T:1:N:0:O:0	.	1,6,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	193	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,4,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	24	.	20	.	0.9583333333333334	.	A:0:C:0:G:0:T:23:N:0:O:1	.	4,5,19,19	69.237	1176.7	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:86:N:0:O:7	.	1,22,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:89:N:0:O:8	.	1,23,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	859	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:3:T:98:N:0:O:0	.	0,52,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1008	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:109:T:0:N:0:O:3	.	3,51,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:43:G:0:T:1:N:0:O:4	.	0,34,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:93:G:0:T:5:N:0:O:1	.	0,48,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	0,40,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:90:T:0:N:0:O:2	.	0,33,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:47:C:0:G:1:T:0:N:0:O:4	.	0,12,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1636	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:0:N:0:O:1	.	1,6,1,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:68:T:0:N:0:O:3	.	1,56,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:94:N:0:O:7	.	0,48,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:66:C:0:G:3:T:0:N:0:O:0	.	1,9,2,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:5:C:0:G:118:T:0:N:0:O:19	.	3,55,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	0,1,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.13385826771653545	.	A:17:C:0:G:109:T:0:N:0:O:1	.	17,41,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	2283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	2,17,1,104	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	0,8,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:2:G:0:T:0:N:0:O:0	.	0,27,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.6984126984126984	.	A:0:C:0:G:0:T:88:N:0:O:38	.	43,81,45,45	61.455	1446.3	.	.	.	.	mixed position	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	3146	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:72:T:0:N:0:O:0	.	0,49,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:97:C:0:G:2:T:0:N:0:O:5	.	2,34,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3209	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:4:C:0:G:115:T:0:N:0:O:0	.	4,37,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3210	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:112:C:0:G:0:T:4:N:0:O:0	.	4,35,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3276	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:1:C:130:G:0:T:3:N:0:O:1	.	3,59,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:1:C:76:G:0:T:5:N:0:O:0	.	0,44,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:39:C:0:G:0:T:1:N:0:O:3	.	1,19,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3540	C	T	N	2	allele in negative control	Alarm	False	False	False	74	.	20	.	0.05405405405405406	.	A:0:C:70:G:0:T:4:N:0:O:0	.	1,59,3,15	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3542	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	1,55,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3701	G	A	N	2	allele in negative control	Alarm	False	False	False	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:97:T:0:N:0:O:3	.	2,40,0,62	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:71:T:0:N:0:O:1	.	1,47,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	3,61,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	1,41,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.019230769230769232	.	A:0:C:0:G:191:T:4:N:0:O:13	.	0,168,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.025	.	A:6:C:0:G:234:T:0:N:0:O:0	.	0,124,6,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	236	.	20	.	0.029661016949152543	.	A:0:C:211:G:0:T:7:N:0:O:18	.	0,132,7,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:117:T:0:N:0:O:0	.	3,49,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:4:C:0:G:128:T:0:N:0:O:1	.	4,63,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4579	T	A	A	14	new position at high frequency	Pass	False	True	True	180	.	20	.	1.0	.	A:180:C:0:G:0:T:0:N:0:O:0	.	98,98,82,82	210.0	2326.9	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:3:T:120:N:0:O:1	.	0,77,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	1,24,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	5224	T	A	T	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:3:C:0:G:0:T:100:N:0:O:47	.	3,88,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	5259	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:94:G:0:T:0:N:0:O:0	.	0,42,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	5621	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:95:G:0:T:0:N:0:O:2	.	0,36,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:105:G:0:T:3:N:0:O:1	.	0,71,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.10588235294117647	.	A:0:C:75:G:0:T:9:N:0:O:1	.	0,69,9,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:74:N:0:O:0	.	0,53,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:95:G:0:T:4:N:0:O:0	.	0,77,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:85:G:0:T:3:N:0:O:7	.	0,50,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,47,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:63:N:0:O:0	.	1,49,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,49,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6575	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	3,53,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:78:G:0:T:3:N:0:O:1	.	3,48,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6696	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:101:G:0:T:3:N:0:O:21	.	2,83,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	6740	C	T	T	14	new position at high frequency	Pass	False	True	True	120	.	20	.	1.0	.	A:0:C:0:G:0:T:120:N:0:O:0	.	59,59,61,61	209.237	1486.6	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:91:G:0:T:2:N:0:O:6	.	0,69,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,72,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7060	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:3:G:0:T:135:N:0:O:0	.	0,87,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:84:G:0:T:2:N:0:O:10	.	1,41,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:94:N:0:O:0	.	1,33,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	2,67,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7452	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:96:T:2:N:0:O:0	.	2,64,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:86:T:0:N:0:O:3	.	4,36,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:96:C:4:G:0:T:0:N:0:O:0	.	4,40,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,35,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:107:N:0:O:3	.	0,70,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:92:C:0:G:2:T:0:N:0:O:3	.	2,35,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	8345	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,61,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:102:N:0:O:1	.	0,62,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	1,29,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:4:C:0:G:56:T:0:N:0:O:2	.	4,9,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:2:G:0:T:67:N:0:O:0	.	2,40,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:1:T:85:N:0:O:6	.	3,42,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:103:T:0:N:0:O:0	.	4,37,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:100:G:0:T:3:N:0:O:0	.	0,54,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.015151515151515152	.	A:0:C:88:G:0:T:2:N:0:O:42	.	2,124,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:87:G:0:T:2:N:0:O:7	.	1,76,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:108:G:0:T:3:N:0:O:0	.	0,53,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:0:C:92:G:0:T:6:N:0:O:0	.	0,57,6,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:0:G:4:T:91:N:0:O:4	.	0,54,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:103:G:0:T:0:N:0:O:7	.	3,57,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	2,48,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:93:C:0:G:0:T:4:N:0:O:2	.	4,71,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:0:C:98:G:0:T:5:N:0:O:0	.	0,82,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:92:T:0:N:0:O:1	.	0,68,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	11812	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:98:G:0:T:2:N:0:O:2	.	3,66,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.017241379310344827	.	A:0:C:0:G:122:T:3:N:0:O:49	.	0,78,3,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:68:C:0:G:3:T:0:N:0:O:0	.	0,55,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:0:G:108:T:3:N:0:O:0	.	0,57,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:113:G:0:T:3:N:0:O:0	.	3,47,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:104:G:0:T:4:N:0:O:3	.	3,48,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:88:T:0:N:0:O:0	.	3,20,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	12749	G	T	G	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.02092050209205021	.	A:1:C:0:G:233:T:5:N:0:O:0	.	5,103,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:118:N:0:O:6	.	3,56,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.10752688172043011	.	A:1:C:80:G:0:T:10:N:0:O:2	.	0,77,10,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.05825242718446602	.	A:6:C:0:G:88:T:0:N:0:O:9	.	6,49,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:88:G:0:T:0:N:0:O:4	.	2,37,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,50,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:99:T:0:N:0:O:4	.	4,36,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:86:G:0:T:3:N:0:O:2	.	0,64,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	100	.	20	.	0.98	.	A:0:C:0:G:0:T:98:N:0:O:2	.	49,51,49,49	269.237	1214.0	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:85:G:0:T:0:N:0:O:1	.	0,62,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:98:T:0:N:0:O:1	.	2,51,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:108:N:0:O:2	.	0,68,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:107:T:0:N:0:O:1	.	4,48,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:72:N:0:O:3	.	0,68,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:95:N:0:O:4	.	0,41,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15422	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:93:C:2:G:0:T:1:N:0:O:3	.	2,54,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	0,52,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:110:N:0:O:0	.	0,68,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:115:T:0:N:0:O:1	.	3,54,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15760	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:101:T:3:N:0:O:0	.	0,57,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15867	T	A	T	12	misc mixed variant	Check	False	False	True	109	.	20	.	0.29357798165137616	.	A:32:C:0:G:0:T:77:N:0:O:0	.	20,75,12,34	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:0:C:1:G:0:T:41:N:0:O:12	.	0,36,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0851063829787234	.	A:0:C:43:G:0:T:4:N:0:O:0	.	0,33,4,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,71,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:0:C:115:G:0:T:5:N:0:O:1	.	0,85,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:91:T:0:N:0:O:6	.	2,21,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	16824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:93:C:0:G:2:T:0:N:0:O:5	.	1,28,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	16828	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:1:C:3:G:0:T:106:N:0:O:2	.	0,45,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:96:N:0:O:3	.	0,52,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:98:C:5:G:0:T:0:N:0:O:0	.	5,34,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.05235602094240838	.	A:10:C:0:G:175:T:0:N:0:O:6	.	10,34,0,157	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:74:C:0:G:2:T:0:N:0:O:7	.	2,45,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:0:T:77:N:0:O:2	.	2,10,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:77:G:0:T:2:N:0:O:4	.	0,64,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	1,29,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,54,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0213903743315508	.	A:1:C:181:G:0:T:4:N:0:O:1	.	2,100,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:0:C:69:G:0:T:5:N:0:O:0	.	0,45,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:99:C:0:G:0:T:5:N:0:O:16	.	0,46,5,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.09090909090909091	.	A:10:C:0:G:98:T:0:N:0:O:2	.	0,64,10,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,16,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.04	.	A:0:C:119:G:0:T:5:N:0:O:1	.	0,68,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:0:G:2:T:0:N:0:O:2	.	2,40,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:4:C:0:G:67:T:0:N:0:O:1	.	4,18,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:35:C:0:G:0:T:1:N:0:O:8	.	0,20,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:3:T:98:N:0:O:0	.	3,47,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:118:T:0:N:0:O:1	.	2,59,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	18898	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	105	.	20	.	0.5904761904761905	.	A:0:C:0:G:0:T:62:N:0:O:43	.	30,73,32,32	27.324	2143.1	.	.	.	.	mixed position	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19321	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	0,23,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19340	G	T	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:47:T:1:N:0:O:0	.	1,15,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19382	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:45:G:0:T:0:N:0:O:1	.	0,29,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19383	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:42:N:0:O:1	.	0,19,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19453	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,28,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19455	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:2:C:0:G:48:T:0:N:0:O:0	.	2,31,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19457	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:0:C:0:G:48:T:2:N:0:O:0	.	2,32,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,30,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.08823529411764706	.	A:0:C:31:G:0:T:3:N:0:O:0	.	0,25,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,28,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:49:T:0:N:0:O:1	.	1,21,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.023529411764705882	.	A:4:C:0:G:0:T:131:N:0:O:35	.	1,56,3,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:96:C:0:G:0:T:3:N:0:O:0	.	1,47,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:0:G:2:T:66:N:0:O:1	.	0,33,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,45,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:98:G:0:T:2:N:0:O:11	.	0,52,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.02617801047120419	.	A:5:C:0:G:182:T:0:N:0:O:4	.	5,49,0,142	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:3:T:95:N:0:O:0	.	3,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	20459	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:4:G:0:T:105:N:0:O:0	.	0,59,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	1,90,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:178:C:0:G:4:T:0:N:0:O:2	.	4,68,0,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:0:G:2:T:58:N:0:O:0	.	1,10,1,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.10843373493975904	.	A:0:C:0:G:64:T:9:N:0:O:10	.	0,56,9,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,19,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:64:C:0:G:3:T:0:N:0:O:0	.	3,7,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.07317073170731707	.	A:6:C:0:G:76:T:0:N:0:O:0	.	6,14,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:115:C:0:G:0:T:3:N:0:O:2	.	3,52,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:0:C:57:G:0:T:4:N:0:O:6	.	2,27,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	22771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:81:C:0:G:2:T:0:N:0:O:5	.	2,15,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:85:T:1:N:0:O:2	.	3,14,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	130	.	20	.	0.9538461538461539	.	A:0:C:0:G:124:T:0:N:0:O:6	.	51,57,73,73	69.237	1536.8	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:80:T:0:N:0:O:6	.	3,18,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	2,53,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.10989010989010989	.	A:0:C:81:G:0:T:10:N:0:O:0	.	0,63,10,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:0:T:70:N:0:O:0	.	2,14,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:70:G:1:T:3:N:0:O:1	.	0,56,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:62:G:2:T:3:N:0:O:7	.	0,64,3,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24381	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.07547169811320754	.	A:0:C:98:G:0:T:8:N:0:O:0	.	4,41,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	24422	C	A	C	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.019138755980861243	.	A:4:C:189:G:0:T:0:N:0:O:16	.	4,147,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	0,0,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:86:G:0:T:2:N:0:O:2	.	1,72,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:0:G:96:T:0:N:0:O:0	.	0,72,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:95:N:0:O:1	.	0,72,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	1,38,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	24984	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:83:N:0:O:2	.	2,50,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	0,1,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25162	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:70:G:0:T:2:N:0:O:2	.	0,45,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:95:N:0:O:0	.	2,68,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,43,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,60,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:95:C:0:G:0:T:4:N:0:O:0	.	4,45,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25513	C	A	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:78:G:0:T:0:N:0:O:0	.	0,37,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25516	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,70,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	2,68,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:75:G:0:T:2:N:0:O:5	.	0,71,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	25696	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:93:T:0:N:0:O:3	.	1,31,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.014598540145985401	.	A:2:C:85:G:0:T:0:N:0:O:50	.	1,38,1,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	1,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:94:G:0:T:2:N:0:O:3	.	1,50,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	25901	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:91:G:0:T:2:N:0:O:3	.	0,58,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26001	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	1,68,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:3:C:0:G:66:T:0:N:0:O:1	.	3,14,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.027472527472527472	.	A:5:C:0:G:172:T:0:N:0:O:5	.	5,57,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:95:G:0:T:3:N:0:O:42	.	0,106,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:0:C:2:G:0:T:48:N:0:O:0	.	0,48,2,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26422	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:1:C:2:G:0:T:76:N:0:O:1	.	1,61,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	2,26,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:95:T:0:N:0:O:2	.	3,28,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:93:T:0:N:0:O:1	.	3,27,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26542	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:1:C:95:G:0:T:2:N:0:O:3	.	0,70,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.03614457831325301	.	A:0:C:159:G:0:T:6:N:0:O:1	.	0,135,6,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.023148148148148147	.	A:0:C:5:G:0:T:211:N:0:O:0	.	0,143,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:93:C:0:G:0:T:2:N:0:O:4	.	2,29,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:77:T:0:N:0:O:1	.	4,12,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,56,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26789	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:70:G:0:T:2:N:0:O:0	.	0,41,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:79:G:0:T:2:N:0:O:0	.	0,53,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:85:C:0:G:2:T:0:N:0:O:12	.	2,35,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:90:C:0:G:5:T:0:N:0:O:10	.	5,47,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:0:G:3:T:0:N:0:O:1	.	2,30,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,25,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.08	.	A:0:C:69:G:0:T:6:N:0:O:0	.	0,63,6,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:1:T:2:N:0:O:1	.	0,69,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27267	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:1:T:116:N:0:O:8	.	3,61,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:5:G:0:T:96:N:0:O:0	.	0,50,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:95:T:0:N:0:O:1	.	2,29,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:86:G:0:T:0:N:0:O:2	.	1,46,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	27696	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	1,49,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	28221	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:0:N:0:O:1	.	2,27,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	28402	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	2,49,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,60,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:93:C:0:G:4:T:0:N:0:O:2	.	4,28,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	28723	T	C	T	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.02032520325203252	.	A:0:C:5:G:0:T:229:N:0:O:12	.	0,100,5,146	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	1.0	.	A:127:C:0:G:0:T:0:N:0:O:0	.	25,25,102,102	202.453	2373.0	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	121	.	20	.	1.0	.	A:121:C:0:G:0:T:0:N:0:O:0	.	19,19,102,102	202.453	2373.0	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:124:G:0:T:0:N:0:O:0	.	25,25,99,99	202.453	2373.0	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,23,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	29058	G	C	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:2:G:77:T:0:N:0:O:1	.	2,7,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	29131	T	G	T	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:0:C:0:G:3:T:128:N:0:O:20	.	1,66,2,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	29271	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	1,50,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	0,0,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:92:T:0:N:0:O:2	.	1,14,1,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:2:C:0:G:98:T:0:N:0:O:13	.	2,33,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00101	artic-pipeline	NB12	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00101	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	0,1,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:26:G:0:T:1:N:0:O:2	.	0,2,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	142	A	C	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:1:G:0:T:0:N:0:O:0	.	0,1,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	204	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	1,4,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	304	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,2,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:90:N:0:O:0	.	0,44,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,33,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	103	.	20	.	0.9902912621359223	.	A:102:C:0:G:0:T:0:N:0:O:1	.	11,12,91,91	204.466	2848.0	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:155:C:0:G:4:T:0:N:0:O:0	.	4,24,0,135	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:73:T:0:N:0:O:17	.	2,17,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	1222	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,77,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	1383	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:3:C:0:G:144:T:0:N:0:O:1	.	0,44,3,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:0:T:87:N:0:O:0	.	0,44,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,4,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	1818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	0,2,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	2184	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:115:C:0:G:3:T:0:N:0:O:1	.	3,38,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.07407407407407407	.	A:8:C:0:G:98:T:1:N:0:O:1	.	8,30,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:77:T:0:N:0:O:2	.	1,23,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	2507	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:89:G:0:T:2:N:0:O:3	.	2,42,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,17,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0335195530726257	.	A:170:C:6:G:0:T:1:N:0:O:2	.	6,109,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:134:T:0:N:0:O:3	.	3,63,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	2,18,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	1,30,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3062	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:92:T:0:N:0:O:2	.	2,27,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:88:C:0:G:3:T:0:N:0:O:1	.	3,23,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:0:G:82:T:4:N:0:O:7	.	0,64,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	195	.	20	.	0.9384615384615385	.	A:0:C:0:G:1:T:183:N:0:O:11	.	65,77,118,118	266.449	735.6	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:0:T:75:N:0:O:1	.	0,48,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.08888888888888889	.	A:0:C:79:G:0:T:8:N:0:O:3	.	1,45,7,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:67:G:0:T:4:N:0:O:0	.	0,31,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	3417	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:0:T:1:N:0:O:0	.	0,0,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3420	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:112:N:0:O:11	.	1,52,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:0:C:78:G:0:T:4:N:0:O:0	.	0,62,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:71:T:0:N:0:O:2	.	0,33,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:0:C:58:G:0:T:3:N:0:O:0	.	0,52,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:94:G:0:T:3:N:0:O:5	.	0,56,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4237	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:1:G:0:T:90:N:0:O:1	.	1,17,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	0,34,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.026881720430107527	.	A:0:C:0:G:175:T:5:N:0:O:6	.	0,133,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4371	G	A	G	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:4:C:0:G:168:T:0:N:0:O:0	.	1,134,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.02262443438914027	.	A:5:C:0:G:213:T:1:N:0:O:2	.	1,113,4,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.02912621359223301	.	A:0:C:189:G:0:T:6:N:0:O:11	.	1,117,5,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:132:C:0:G:0:T:3:N:0:O:6	.	0,79,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4577	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:0:C:94:G:0:T:2:N:0:O:18	.	1,39,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:114:G:0:T:4:N:0:O:4	.	0,92,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:81:G:0:T:0:N:0:O:17	.	0,89,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5101	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:88:C:0:G:0:T:2:N:0:O:3	.	0,71,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:86:C:0:G:0:T:3:N:0:O:0	.	3,24,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	2,28,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:46:N:0:O:1	.	0,44,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.08196721311475409	.	A:0:C:56:G:0:T:5:N:0:O:0	.	0,50,5,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:105:N:0:O:4	.	0,61,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.01652892561983471	.	A:2:C:0:G:92:T:0:N:0:O:27	.	0,25,2,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:87:C:0:G:2:T:0:N:0:O:3	.	0,48,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:98:G:0:T:2:N:0:O:6	.	0,76,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	0.9785714285714285	.	A:0:C:0:G:0:T:137:N:0:O:3	.	65,68,72,72	345.463	1196.6	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:0:C:77:G:0:T:7:N:0:O:0	.	0,63,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:93:G:0:T:4:N:0:O:3	.	0,67,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	0,59,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	6427	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:1:G:0:T:84:N:0:O:3	.	1,26,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:106:C:0:G:3:T:0:N:0:O:1	.	3,35,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.078125	.	A:0:C:59:G:0:T:5:N:0:O:0	.	5,36,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.030303030303030304	.	A:186:C:0:G:6:T:0:N:0:O:6	.	6,80,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:0:G:0:T:2:N:0:O:0	.	0,48,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	7223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,54,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	7330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,55,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.07317073170731707	.	A:6:C:0:G:74:T:0:N:0:O:2	.	6,20,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:0:T:100:N:0:O:2	.	0,43,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	7974	T	C	T	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:0:C:4:G:0:T:191:N:0:O:1	.	1,91,3,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:3:G:0:T:96:N:0:O:0	.	0,45,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	8578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,44,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,69,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:0:C:0:G:0:T:115:N:0:O:0	.	50,50,65,65	276.227	996.1	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.060240963855421686	.	A:5:C:0:G:76:T:0:N:0:O:2	.	5,14,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	8950	C	T	T	17	accept high frequency variant	Pass	False	True	True	269	.	20	.	0.9516728624535316	.	A:0:C:0:G:0:T:256:N:0:O:13	.	107,120,149,149	210.0	1297.3	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:0:T:88:N:0:O:6	.	2,33,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	9141	G	C	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:117:T:0:N:0:O:4	.	0,43,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.04794520547945205	.	A:0:C:137:G:0:T:7:N:0:O:2	.	0,129,7,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.030864197530864196	.	A:0:C:5:G:0:T:155:N:0:O:2	.	0,142,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	1,48,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:90:G:0:T:2:N:0:O:13	.	0,74,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,21,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:85:G:0:T:2:N:0:O:11	.	2,32,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	10028	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:119:C:0:G:4:T:0:N:0:O:1	.	4,54,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,22,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	10464	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:80:C:0:G:2:T:0:N:0:O:6	.	2,29,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:111:C:0:G:4:T:0:N:0:O:0	.	4,44,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:104:T:3:N:0:O:2	.	3,59,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.06666666666666667	.	A:0:C:0:G:8:T:105:N:0:O:7	.	0,59,8,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	11107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:89:N:0:O:0	.	0,58,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:97:N:0:O:2	.	2,51,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	11195	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	1,71,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:95:C:0:G:0:T:4:N:0:O:0	.	4,62,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	11534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,52,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	11818	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:93:N:0:O:2	.	2,57,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12053	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:95:G:0:T:2:N:0:O:7	.	0,55,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:130:T:1:N:0:O:2	.	3,37,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.043478260869565216	.	A:131:C:0:G:6:T:0:N:0:O:1	.	4,50,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:2:C:0:G:80:T:0:N:0:O:28	.	1,93,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:112:G:0:T:3:N:0:O:0	.	3,58,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:101:G:0:T:3:N:0:O:5	.	3,59,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:71:T:0:N:0:O:6	.	5,27,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12452	C	A	C	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:4:C:174:G:0:T:0:N:0:O:6	.	0,118,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	136	.	20	.	0.9485294117647058	.	A:129:C:0:G:0:T:0:N:0:O:7	.	57,64,72,72	210.0	1173.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:68:G:0:T:4:N:0:O:1	.	0,50,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:82:G:0:T:3:N:0:O:1	.	0,55,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13194	T	C	T	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.029940119760479042	.	A:0:C:5:G:0:T:161:N:0:O:1	.	0,81,5,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:0:C:66:G:0:T:4:N:0:O:0	.	0,63,4,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:5:C:0:G:93:T:0:N:0:O:5	.	5,29,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,36,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:91:T:0:N:0:O:6	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,43,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13772	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:106:N:0:O:1	.	0,70,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:31:C:0:G:1:T:0:N:0:O:3	.	0,3,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,26,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:101:T:3:N:0:O:1	.	3,33,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:0:C:76:G:0:T:4:N:0:O:3	.	0,60,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:110:N:0:O:1	.	0,77,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:5:C:0:G:94:T:0:N:0:O:0	.	5,41,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:4:G:0:T:82:N:0:O:3	.	0,80,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15422	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:2:G:0:T:1:N:0:O:0	.	2,35,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:87:C:0:G:3:T:0:N:0:O:0	.	1,38,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:115:T:0:N:0:O:3	.	3,36,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15693	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:122:C:0:G:4:T:0:N:0:O:0	.	4,71,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15766	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:0:G:0:T:37:N:0:O:23	.	0,43,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.23684210526315788	.	A:1:C:28:G:0:T:9:N:0:O:0	.	0,18,9,20	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	15953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:87:N:0:O:2	.	2,43,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	15958	G	C	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:97:T:0:N:0:O:0	.	1,61,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:112:T:3:N:0:O:1	.	3,53,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,12,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:105:N:0:O:0	.	1,60,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:0:G:3:T:82:N:0:O:2	.	0,42,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:81:C:0:G:3:T:0:N:0:O:0	.	1,27,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,37,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	16950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:79:N:0:O:4	.	0,43,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:4:C:0:G:178:T:0:N:0:O:2	.	4,19,0,165	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:1:T:79:N:0:O:3	.	1,18,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:111:T:0:N:0:O:0	.	4,61,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:89:T:0:N:0:O:0	.	2,32,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,59,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:81:G:0:T:3:N:0:O:1	.	0,53,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:0:C:61:G:0:T:4:N:0:O:0	.	0,45,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:98:C:0:G:0:T:3:N:0:O:12	.	0,47,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.125	.	A:13:C:0:G:91:T:0:N:0:O:0	.	0,55,13,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	17876	C	A	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:75:G:0:T:0:N:0:O:0	.	0,26,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:0:G:4:T:85:N:0:O:1	.	3,29,1,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	0.9736842105263158	.	A:0:C:111:G:0:T:3:N:0:O:0	.	47,47,64,67	203.216	1531.3	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:0:C:58:G:0:T:4:N:0:O:0	.	0,49,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,30,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:5:G:0:T:103:N:0:O:3	.	0,65,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	19868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.021834061135371178	.	A:0:C:221:G:0:T:5:N:0:O:3	.	1,142,4,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:92:G:0:T:4:N:0:O:0	.	0,57,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:100:G:0:T:3:N:0:O:5	.	0,63,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	20238	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,60,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:0:G:4:T:99:N:0:O:0	.	4,72,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:123:T:0:N:0:O:5	.	3,93,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:82:C:0:G:3:T:0:N:0:O:4	.	2,48,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	20397	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,50,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:141:G:0:T:0:N:0:O:2	.	0,84,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:0:G:2:T:63:N:0:O:0	.	2,5,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.07368421052631578	.	A:0:C:0:G:83:T:7:N:0:O:5	.	0,67,7,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:84:G:0:T:3:N:0:O:0	.	0,52,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,62,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:69:T:0:N:0:O:1	.	2,58,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.01818181818181818	.	A:0:C:1:G:0:T:31:N:0:O:23	.	0,45,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.06593406593406594	.	A:6:C:0:G:82:T:0:N:0:O:3	.	6,26,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:127:N:0:O:0	.	0,74,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:85:N:0:O:0	.	2,28,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21587	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:4:C:125:G:0:T:0:N:0:O:0	.	1,62,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21654	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:93:G:0:T:2:N:0:O:4	.	0,77,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	2,18,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:68:G:0:T:3:N:0:O:3	.	0,59,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	21874	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	1,57,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:137:C:0:G:3:T:0:N:0:O:3	.	3,68,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0625	.	A:8:C:0:G:120:T:0:N:0:O:0	.	8,72,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.05185185185185185	.	A:0:C:0:G:7:T:128:N:0:O:0	.	7,64,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:0:C:144:G:0:T:3:N:0:O:4	.	1,111,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	22378	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,13,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:0:G:143:T:0:N:0:O:1	.	3,35,0,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	22972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:138:N:0:O:4	.	0,96,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.017142857142857144	.	A:0:C:145:G:0:T:3:N:0:O:27	.	1,141,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.020942408376963352	.	A:0:C:4:G:0:T:187:N:0:O:0	.	0,122,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:4:C:0:G:78:T:0:N:0:O:7	.	4,16,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23598	A	C	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:99:C:3:G:0:T:0:N:0:O:1	.	0,69,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23663	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:91:T:0:N:0:O:3	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:91:C:0:G:3:T:1:N:0:O:0	.	3,25,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.1509433962264151	.	A:0:C:89:G:0:T:16:N:0:O:1	.	0,78,16,28	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,77,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:139:C:0:G:0:T:4:N:0:O:0	.	4,73,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:4:C:0:G:0:T:75:N:0:O:0	.	4,27,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	137	.	20	.	1.0	.	A:0:C:0:G:0:T:137:N:0:O:0	.	72,72,65,65	210.0	677.2	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,37,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:79:G:0:T:3:N:0:O:2	.	0,70,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:85:T:0:N:0:O:1	.	5,18,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:81:T:0:N:0:O:5	.	4,14,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,40,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24395	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:98:G:0:T:2:N:0:O:6	.	0,45,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24534	T	G	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:0:G:3:T:140:N:0:O:1	.	0,80,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	0,2,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:3:T:0:N:0:O:0	.	3,51,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:98:T:0:N:0:O:1	.	0,78,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:0:G:4:T:99:N:0:O:0	.	0,82,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	53	.	20	.	0.05660377358490566	.	A:0:C:3:G:0:T:48:N:0:O:2	.	3,41,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	25231	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,66,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	0,52,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:91:C:0:G:0:T:3:N:0:O:0	.	3,35,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25593	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,13,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:91:G:0:T:0:N:0:O:4	.	2,45,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,57,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:84:G:0:T:2:N:0:O:12	.	0,81,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:5:C:73:G:0:T:0:N:0:O:39	.	3,34,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.08333333333333333	.	A:52:C:5:G:0:T:0:N:0:O:3	.	0,37,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,47,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:81:G:0:T:2:N:0:O:1	.	0,49,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:90:G:0:T:4:N:0:O:0	.	0,59,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:76:C:0:G:2:T:0:N:0:O:2	.	2,18,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.03508771929824561	.	A:165:C:0:G:6:T:0:N:0:O:0	.	1,130,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26222	C	A	C	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:4:C:177:G:0:T:0:N:0:O:2	.	0,122,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	2,48,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	2,72,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,41,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:81:C:0:G:4:T:0:N:0:O:0	.	4,34,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	2,35,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,33,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26542	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	0,76,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:80:G:0:T:2:N:0:O:3	.	2,33,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:78:C:0:G:0:T:3:N:0:O:2	.	3,26,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.07352941176470588	.	A:5:C:0:G:63:T:0:N:0:O:0	.	5,10,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:114:G:0:T:0:N:0:O:0	.	72,72,42,42	276.227	1311.0	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.06060606060606061	.	A:0:C:93:G:0:T:6:N:0:O:0	.	0,75,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	26825	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:3:T:0:N:0:O:1	.	3,67,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:7:C:0:G:76:T:1:N:0:O:0	.	7,20,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,58,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	27267	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:0:T:118:N:0:O:7	.	1,64,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	0.9847328244274809	.	A:0:C:129:G:0:T:0:N:0:O:2	.	68,70,61,61	210.0	1812.2	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	245	.	20	.	0.9918367346938776	.	A:0:C:243:G:0:T:1:N:0:O:1	.	109,111,134,134	250.927	1471.2	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	28148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:0:G:1:T:40:N:0:O:0	.	1,41,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28246	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:0:G:3:T:108:N:0:O:0	.	0,46,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28373	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	1,51,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:80:T:0:N:0:O:0	.	0,54,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:73:G:0:T:2:N:0:O:4	.	1,38,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:4:G:0:T:92:N:0:O:0	.	0,55,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:87:G:0:T:2:N:0:O:4	.	0,26,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:82:N:0:O:3	.	0,28,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	119	.	20	.	0.9747899159663865	.	A:0:C:1:G:116:T:0:N:0:O:2	.	26,27,90,92	59.694	1529.7	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	28927	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:89:N:0:O:1	.	0,25,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:56:G:0:T:2:N:0:O:3	.	0,14,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	132	.	20	.	0.05303030303030303	.	A:0:C:124:G:0:T:7:N:0:O:1	.	0,105,7,27	.	49.2	.	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29023	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:3:G:0:T:133:N:0:O:1	.	0,105,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29055	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,17,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:29:C:1:G:0:T:0:N:0:O:1	.	1,4,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:63:T:0:N:0:O:1	.	2,4,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,39,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,39,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.047619047619047616	.	A:39:C:0:G:2:T:0:N:0:O:1	.	0,4,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:37:C:0:G:2:T:0:N:0:O:0	.	2,4,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	2,25,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:75:C:0:G:3:T:0:N:0:O:3	.	3,17,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:75:T:0:N:0:O:12	.	4,24,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00104	artic-pipeline	NB02	MN908947.3	29451	C	T	T	17	accept high frequency variant	Pass	False	True	True	143	.	20	.	0.986013986013986	.	A:0:C:0:G:0:T:141:N:0:O:2	.	83,85,58,58	280.0	1907.6	.	.	.	.	.	.	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	113	.	20	.	0.7610619469026548	.	A:0:C:0:G:86:T:1:N:0:O:26	.	23,50,63,63	174.549	840.8	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00104	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	13	.	20	.	1.0	.	A:0:C:0:G:0:T:13:N:0:O:0	.	4,4,9,9	278.474	1247.5	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,53,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.030303030303030304	.	A:160:C:0:G:5:T:0:N:0:O:0	.	5,47,0,118	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:105:G:0:T:4:N:0:O:1	.	0,52,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:0:C:101:G:0:T:5:N:0:O:1	.	0,37,5,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,37,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	1595	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:111:T:0:N:0:O:2	.	1,31,2,85	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	0,0,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	1749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:0:T:2:N:0:O:0	.	0,38,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:0:T:85:N:0:O:1	.	0,29,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:71:C:0:G:3:T:0:N:0:O:1	.	2,7,1,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:4:C:0:G:132:T:0:N:0:O:19	.	4,51,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.0916030534351145	.	A:12:C:0:G:118:T:0:N:0:O:1	.	11,36,1,95	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:1:G:0:T:75:N:0:O:2	.	0,41,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	0,16,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:147:C:3:G:0:T:0:N:0:O:1	.	3,89,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:142:C:0:G:4:T:0:N:0:O:0	.	4,63,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:123:T:0:N:0:O:2	.	3,48,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:3:G:0:T:145:N:0:O:1	.	0,106,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	20	.	0.6639344262295082	.	A:0:C:0:G:0:T:81:N:0:O:41	.	38,79,43,43	53.922	1431.2	.	.	.	.	mixed position	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:76:T:2:N:0:O:14	.	0,57,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:82:C:0:G:3:T:0:N:0:O:1	.	3,14,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:0:G:4:T:76:N:0:O:1	.	4,13,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:0:T:102:N:0:O:0	.	0,66,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3652	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:129:C:0:G:3:T:0:N:0:O:2	.	3,61,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:114:T:0:N:0:O:1	.	3,53,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:83:N:0:O:15	.	0,56,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:80:T:2:N:0:O:7	.	1,42,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.06493506493506493	.	A:5:C:0:G:72:T:0:N:0:O:0	.	0,36,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:0:T:115:N:0:O:6	.	3,64,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:43:G:0:T:1:N:0:O:6	.	0,42,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4322	T	G	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:1:T:35:N:0:O:1	.	1,35,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.019704433497536946	.	A:0:C:188:G:0:T:4:N:0:O:11	.	0,148,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.041884816753926704	.	A:0:C:0:G:174:T:8:N:0:O:9	.	0,140,8,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.021929824561403508	.	A:5:C:0:G:223:T:0:N:0:O:0	.	0,103,5,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.021929824561403508	.	A:0:C:199:G:0:T:5:N:0:O:24	.	0,118,5,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4902	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:124:N:0:O:3	.	0,83,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:3:T:125:N:0:O:3	.	0,81,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:99:G:0:T:3:N:0:O:5	.	0,80,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	4955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:76:C:0:G:0:T:2:N:0:O:1	.	2,26,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:0:T:97:N:0:O:0	.	2,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	5520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	0,57,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:2:G:0:T:52:N:0:O:0	.	2,52,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.125	.	A:0:C:63:G:0:T:9:N:0:O:0	.	0,56,9,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:4:G:0:T:110:N:0:O:5	.	0,76,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:86:T:0:N:0:O:17	.	0,27,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:89:G:0:T:5:N:0:O:1	.	0,71,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6203	A	T	A	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.022727272727272728	.	A:214:C:0:G:0:T:5:N:0:O:1	.	4,75,1,145	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:89:G:0:T:5:N:0:O:3	.	0,60,5,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:77:T:0:N:0:O:3	.	2,32,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:1:C:0:G:90:T:2:N:0:O:3	.	0,24,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:91:N:0:O:2	.	0,61,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,44,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,32,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:193:C:0:G:5:T:3:N:0:O:6	.	4,70,1,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.03225806451612903	.	A:0:C:176:G:0:T:6:N:0:O:4	.	0,96,6,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:0:C:181:G:0:T:4:N:0:O:1	.	0,108,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6830	A	C	A	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.02072538860103627	.	A:185:C:4:G:1:T:1:N:0:O:2	.	4,88,0,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	2,19,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:69:C:1:G:0:T:4:N:0:O:1	.	0,50,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,52,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:0:G:2:T:78:N:0:O:0	.	2,35,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	7605	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	0,63,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:1:G:0:T:3:N:0:O:0	.	3,54,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	7939	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	0,63,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:3:G:0:T:95:N:0:O:1	.	0,65,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	8794	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:0:T:97:N:0:O:0	.	0,51,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:4:C:0:G:64:T:0:N:0:O:2	.	4,7,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:0:T:76:N:0:O:0	.	2,35,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:109:T:0:N:0:O:1	.	4,47,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	9141	G	C	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:3:G:127:T:0:N:0:O:3	.	0,66,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	9172	T	C	C	17	accept high frequency variant	Pass	False	True	True	126	.	20	.	0.9920634920634921	.	A:0:C:125:G:0:T:0:N:0:O:1	.	67,68,58,58	350.0	1576.5	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:91:G:0:T:3:N:0:O:0	.	0,60,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	9417	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:107:T:3:N:0:O:0	.	2,58,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	9479	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:88:T:2:N:0:O:1	.	0,38,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	9526	G	T	T	17	accept high frequency variant	Pass	False	True	True	269	.	20	.	0.9925650557620818	.	A:0:C:0:G:0:T:267:N:0:O:2	.	162,164,105,105	69.237	2268.7	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	9932	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:119:C:0:G:3:T:0:N:0:O:0	.	3,60,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.07792207792207792	.	A:6:C:0:G:70:T:0:N:0:O:1	.	6,20,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:0:C:79:G:0:T:6:N:0:O:11	.	6,33,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:0:T:101:N:0:O:2	.	0,56,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:0:T:84:N:0:O:2	.	0,28,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.07272727272727272	.	A:0:C:102:G:0:T:8:N:0:O:0	.	0,63,8,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	2,27,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:80:N:0:O:3	.	1,46,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:87:G:0:T:5:N:0:O:1	.	0,55,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	10948	A	G	G	14	new position at high frequency	Pass	False	True	True	121	.	20	.	0.9008264462809917	.	A:0:C:0:G:109:T:0:N:0:O:12	.	45,57,64,64	210.0	1208.6	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:0:C:0:G:127:T:4:N:0:O:35	.	4,100,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:0:G:4:T:92:N:0:O:0	.	4,52,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0898876404494382	.	A:0:C:78:G:0:T:8:N:0:O:3	.	0,63,8,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:0:C:87:G:0:T:2:N:0:O:26	.	0,81,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.03496503496503497	.	A:5:C:0:G:133:T:0:N:0:O:5	.	5,30,0,113	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:73:T:0:N:0:O:15	.	0,66,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:86:T:0:N:0:O:1	.	3,19,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	12527	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:120:C:0:G:3:T:0:N:0:O:0	.	3,47,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:0:C:72:G:0:T:4:N:0:O:1	.	0,56,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	0,47,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:91:G:0:T:4:N:0:O:0	.	0,52,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:57:C:0:G:2:T:0:N:0:O:1	.	2,11,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:74:G:0:T:5:N:0:O:2	.	0,69,5,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:4:C:0:G:110:T:0:N:0:O:9	.	4,52,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,52,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13565	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:4:G:0:T:114:N:0:O:1	.	0,66,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:74:G:0:T:2:N:0:O:2	.	1,41,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:4:C:0:G:111:T:0:N:0:O:4	.	4,31,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:112:C:0:G:0:T:3:N:0:O:3	.	0,64,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:96:T:1:N:0:O:0	.	3,28,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:48:C:0:G:2:T:0:N:0:O:2	.	0,3,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,50,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:111:C:0:G:3:T:1:N:0:O:0	.	3,46,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	14407	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	2,60,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	103	.	20	.	0.9805825242718447	.	A:0:C:1:G:0:T:101:N:0:O:1	.	68,70,33,33	279.237	1474.0	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	14475	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:0:T:2:N:0:O:2	.	0,89,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	14731	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:0:G:120:T:0:N:0:O:16	.	3,91,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,34,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,39,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	15619	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:104:G:0:T:3:N:0:O:9	.	1,58,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.015873015873015872	.	A:0:C:1:G:0:T:41:N:0:O:21	.	1,38,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.08695652173913043	.	A:0:C:42:G:0:T:4:N:0:O:0	.	0,22,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:0:T:2:N:0:O:1	.	2,39,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:103:G:4:T:0:N:0:O:0	.	4,44,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:93:N:0:O:5	.	1,31,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:101:T:4:N:0:O:1	.	3,49,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	2,12,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16828	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:104:N:0:O:2	.	0,41,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:0:G:5:T:86:N:0:O:2	.	0,40,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16837	G	T	G	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.019230769230769232	.	A:1:C:0:G:114:T:3:N:0:O:38	.	1,55,2,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:66:C:0:G:3:T:0:N:0:O:0	.	0,21,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:72:C:0:G:4:T:0:N:0:O:4	.	4,13,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:5:C:0:G:0:T:69:N:0:O:2	.	5,18,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17201	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:0:T:87:N:0:O:6	.	2,34,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:78:G:0:T:3:N:0:O:1	.	0,61,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,53,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:98:C:0:G:0:T:3:N:0:O:4	.	0,55,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:0:C:71:G:0:T:5:N:0:O:2	.	0,44,5,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:89:C:0:G:0:T:5:N:0:O:18	.	0,43,5,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.1415929203539823	.	A:16:C:0:G:95:T:0:N:0:O:2	.	0,60,16,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:82:G:0:T:2:N:0:O:3	.	0,67,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:0:C:112:G:0:T:5:N:0:O:1	.	0,76,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:0:G:4:T:80:N:0:O:0	.	4,28,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	18735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,14,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	19071	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:0:C:4:G:0:T:138:N:0:O:0	.	0,68,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	19415	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	1,52,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:0:C:57:G:0:T:3:N:0:O:1	.	0,49,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:101:N:0:O:2	.	0,52,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:0:G:3:T:73:N:0:O:2	.	0,29,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	20135	T	A	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:2:C:0:G:1:T:85:N:0:O:22	.	0,53,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	20238	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:0:G:3:T:109:N:0:O:2	.	3,52,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.02553191489361702	.	A:225:C:0:G:6:T:0:N:0:O:4	.	6,79,0,156	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:81:C:0:G:4:T:0:N:0:O:0	.	0,3,4,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:5:C:0:G:107:T:0:N:0:O:14	.	1,17,4,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.08602150537634409	.	A:0:C:0:G:80:T:8:N:0:O:5	.	0,59,8,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:90:G:0:T:3:N:0:O:2	.	0,52,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:109:G:0:T:3:N:0:O:1	.	0,67,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.01639344262295082	.	A:1:C:0:G:0:T:36:N:0:O:24	.	1,49,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,54,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:83:T:0:N:0:O:1	.	5,18,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:83:N:0:O:17	.	0,85,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:98:N:0:O:0	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21633	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:0:T:98:N:0:O:3	.	1,62,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21634	A	C	A	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.017543859649122806	.	A:117:C:3:G:0:T:0:N:0:O:51	.	2,69,1,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,73,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:0:G:116:T:0:N:0:O:11	.	3,66,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:5:C:0:G:96:T:0:N:0:O:0	.	5,41,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:101:N:0:O:0	.	2,34,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	22987	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.022857142857142857	.	A:0:C:168:G:0:T:4:N:0:O:3	.	0,111,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.018072289156626505	.	A:0:C:137:G:0:T:3:N:0:O:26	.	1,148,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	23338	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:95:N:0:O:4	.	2,57,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	0.924812030075188	.	A:0:C:0:G:123:T:0:N:0:O:10	.	57,67,66,66	405.463	1638.8	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	23566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:77:C:0:G:2:T:0:N:0:O:1	.	2,16,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	23660	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:95:T:2:N:0:O:2	.	0,41,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.07142857142857142	.	A:0:C:89:G:0:T:7:N:0:O:2	.	0,79,7,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,19,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:86:T:0:N:0:O:2	.	2,22,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:0:C:80:G:0:T:5:N:0:O:0	.	0,63,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:71:G:0:T:3:N:0:O:11	.	1,76,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:83:T:0:N:0:O:3	.	2,17,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24325	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:0:G:0:T:2:N:0:O:0	.	0,43,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24619	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:123:C:0:G:3:T:0:N:0:O:1	.	3,62,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:3:G:0:T:0:N:0:O:1	.	3,48,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:114:G:0:T:3:N:0:O:0	.	0,81,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,34,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	0,72,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:0:C:0:G:5:T:102:N:0:O:0	.	0,78,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	36	.	20	.	0.08333333333333333	.	A:0:C:3:G:0:T:32:N:0:O:1	.	3,27,0,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	25060	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:2:T:0:N:0:O:1	.	2,24,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	0,2,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:113:C:0:G:3:T:1:N:0:O:1	.	3,59,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25362	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:0:N:0:O:1	.	2,26,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:83:C:0:G:4:T:0:N:0:O:3	.	4,25,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:98:N:0:O:3	.	0,72,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:91:C:0:G:0:T:3:N:0:O:0	.	3,40,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:62:C:2:G:0:T:0:N:0:O:0	.	1,32,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25593	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	2,23,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:103:G:0:T:0:N:0:O:5	.	3,61,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:93:G:0:T:2:N:0:O:3	.	1,59,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25785	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	0,55,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:85:G:0:T:0:N:0:O:52	.	3,50,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:73:C:0:G:0:T:4:N:0:O:2	.	0,56,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:104:C:0:G:3:T:0:N:0:O:2	.	3,46,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:91:G:0:T:4:N:0:O:1	.	1,52,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,26,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26209	G	T	T	14	new position at high frequency	Pass	False	True	True	132	.	20	.	0.9772727272727273	.	A:0:C:0:G:1:T:129:N:0:O:2	.	58,61,71,71	342.247	1998.2	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,48,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:86:G:0:T:3:N:0:O:0	.	0,63,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	1,36,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,37,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:6:C:0:G:86:T:0:N:0:O:0	.	6,33,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.056179775280898875	.	A:0:C:168:G:0:T:10:N:0:O:0	.	0,148,10,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26625	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,64,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	26626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:1:T:96:N:0:O:4	.	1,67,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:92:N:0:O:0	.	1,46,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:90:N:0:O:0	.	0,60,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:0:T:2:N:0:O:1	.	2,24,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.08974358974358974	.	A:7:C:0:G:71:T:0:N:0:O:0	.	7,10,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26730	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	113	.	20	.	0.6991150442477876	.	A:0:C:0:G:0:T:79:N:0:O:34	.	32,66,47,47	266.433	1516.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:0:C:82:G:0:T:4:N:0:O:0	.	0,60,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26800	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:82:N:0:O:1	.	2,41,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:1:G:89:T:0:N:0:O:0	.	3,38,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:70:C:0:G:2:T:0:N:0:O:23	.	2,39,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0821917808219178	.	A:6:C:0:G:66:T:0:N:0:O:1	.	6,25,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:0:C:84:G:0:T:7:N:0:O:1	.	0,76,7,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27406	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:90:G:0:T:2:N:0:O:19	.	0,87,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,51,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:97:G:0:T:2:N:0:O:4	.	0,70,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.02403846153846154	.	A:203:C:0:G:0:T:5:N:0:O:0	.	1,94,4,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:81:G:0:T:0:N:0:O:3	.	4,54,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.026490066225165563	.	A:116:C:0:G:0:T:4:N:0:O:31	.	4,106,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	1,4,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.0625	.	A:4:C:0:G:58:T:0:N:0:O:2	.	4,15,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	2,34,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,31,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:76:T:0:N:0:O:1	.	3,24,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28291	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,58,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:89:G:0:T:0:N:0:O:7	.	3,58,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:119:G:0:T:3:N:0:O:1	.	0,50,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:100:T:3:N:0:O:1	.	0,30,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:118:T:3:N:0:O:0	.	0,48,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:0:G:3:T:117:N:0:O:27	.	0,62,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:78:G:0:T:3:N:0:O:1	.	2,36,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.06060606060606061	.	A:0:C:60:G:0:T:4:N:0:O:2	.	0,26,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:52:G:0:T:2:N:0:O:0	.	0,24,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	1.0	.	A:122:C:0:G:0:T:0:N:0:O:0	.	29,29,93,93	535.181	2432.2	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:115:C:0:G:0:T:0:N:0:O:0	.	24,24,91,91	535.181	2432.2	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	1.0	.	A:0:C:120:G:0:T:0:N:0:O:0	.	29,29,91,91	535.181	2432.2	.	.	.	.	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,26,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00105	artic-pipeline	NB03	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:64:G:0:T:2:N:0:O:5	.	0,29,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:108:G:0:T:4:N:0:O:0	.	0,82,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:87:T:0:N:0:O:4	.	2,9,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:93:G:0:T:2:N:0:O:10	.	0,49,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:91:G:0:T:0:N:0:O:4	.	4,38,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29195	G	T	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:1:G:122:T:3:N:0:O:24	.	0,51,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:100:G:3:T:0:N:0:O:3	.	0,32,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:46:C:0:G:1:T:0:N:0:O:3	.	0,2,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:52:C:0:G:2:T:0:N:0:O:1	.	2,5,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,14,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,14,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:91:T:0:N:0:O:7	.	2,20,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	29578	C	T	C	16	ignore low frequency variant	Pass	False	False	True	247	.	20	.	0.020242914979757085	.	A:0:C:238:G:0:T:5:N:0:O:4	.	5,129,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00105	artic-pipeline	NB03	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	126	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:1:G:0:T:0:N:0:O:0	.	1,4,0,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	219	G	C	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:19:T:0:N:0:O:0	.	1,5,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	220	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,5,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	17	.	20	.	0.9411764705882352	.	A:0:C:0:G:0:T:16:N:0:O:1	.	4,5,12,12	275.463	1244.8	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	255	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,5,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	292	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,3,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	0.9924812030075189	.	A:0:C:1:G:0:T:132:N:0:O:0	.	86,86,46,47	210.0	1396.8	.	.	.	.	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	1337	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	1,15,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	1534	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:1:C:0:G:93:T:2:N:0:O:0	.	0,33,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:84:C:2:G:0:T:0:N:0:O:3	.	2,54,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.028571428571428567	.	A:0:C:3:G:0:T:92:N:0:O:10	.	0,55,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0505050505050505	.	A:5:C:0:G:93:T:0:N:0:O:1	.	5,17,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:5:C:0:G:89:T:0:N:0:O:1	.	0,22,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.03571428571428571	.	A:131:C:0:G:5:T:0:N:0:O:4	.	5,86,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:3:T:0:N:0:O:1	.	3,30,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	2894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	3,29,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	124	.	20	.	0.6612903225806451	.	A:0:C:0:G:0:T:82:N:0:O:42	.	34,76,48,48	260.213	1473.5	.	.	.	.	mixed position	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.027272727272727268	.	A:0:C:3:G:0:T:105:N:0:O:2	.	0,54,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:0:G:83:T:2:N:0:O:19	.	0,69,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	3353	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:122:T:0:N:0:O:1	.	3,35,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.04166666666666666	.	A:0:C:67:G:0:T:3:N:0:O:2	.	0,37,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:47:C:0:G:0:T:2:N:0:O:3	.	2,26,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:85:G:0:T:3:N:0:O:1	.	0,67,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3580	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:0:T:2:N:0:O:1	.	2,64,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3602	C	T	T	14	new position at high frequency	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:0:G:0:T:114:N:0:O:0	.	58,58,56,56	350.0	860.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.029126213592233014	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,39,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3663	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:0:G:109:T:4:N:0:O:1	.	4,55,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3754	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	3773	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0198019801980198	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,66,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:3:T:0:N:0:O:0	.	3,45,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:50:G:0:T:2:N:0:O:1	.	0,41,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:45:N:0:O:1	.	0,39,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.03414634146341464	.	A:0:C:0:G:190:T:7:N:0:O:8	.	0,147,7,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	4633	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:112:G:0:T:0:N:0:O:1	.	3,46,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:5:C:0:G:72:T:0:N:0:O:1	.	5,45,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	5441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030307	.	A:2:C:0:G:63:T:0:N:0:O:1	.	2,31,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	5501	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	0,6,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.02803738317757009	.	A:3:C:0:G:104:T:0:N:0:O:0	.	0,67,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.028571428571428567	.	A:3:C:0:G:102:T:0:N:0:O:0	.	1,68,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,71,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.1038961038961039	.	A:0:C:68:G:0:T:8:N:0:O:1	.	0,58,8,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.07368421052631577	.	A:0:C:88:G:0:T:7:N:0:O:0	.	0,71,7,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:104:G:0:T:4:N:0:O:1	.	4,62,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	6430	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:3:G:0:T:94:N:0:O:1	.	2,54,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	6633	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:1:C:93:G:0:T:2:N:0:O:0	.	0,32,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:0:C:0:G:5:T:92:N:0:O:3	.	0,47,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	6706	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:98:G:0:T:2:N:0:O:12	.	0,46,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:103:T:0:N:0:O:3	.	3,37,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.026881720430107527	.	A:172:C:0:G:5:T:1:N:0:O:8	.	5,78,0,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.02325581395348837	.	A:0:C:0:G:2:T:84:N:0:O:0	.	2,39,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:99:C:0:G:0:T:6:N:0:O:1	.	0,75,6,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:108:C:0:G:4:T:0:N:0:O:1	.	4,63,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:90:T:0:N:0:O:1	.	4,50,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,29,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.029126213592233014	.	A:3:C:0:G:100:T:0:N:0:O:0	.	2,41,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7598	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0198019801980198	.	A:0:C:0:G:2:T:98:N:0:O:1	.	1,58,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:0:T:3:N:0:O:0	.	3,41,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:110:C:4:G:0:T:0:N:0:O:0	.	4,36,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7815	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:71:G:0:T:2:N:0:O:0	.	1,46,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	7842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,48,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882356	.	A:0:C:3:G:0:T:97:N:0:O:2	.	0,55,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	7939	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:95:N:0:O:2	.	0,59,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	8077	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:3:T:0:N:0:O:0	.	3,57,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.032786885245901634	.	A:0:C:4:G:0:T:118:N:0:O:0	.	0,73,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	1,47,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	8738	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,48,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	8844	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	2,43,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.07692307692307693	.	A:5:C:1:G:58:T:0:N:0:O:1	.	5,18,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.06542056074766353	.	A:7:C:0:G:0:T:95:N:0:O:5	.	6,40,1,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.029126213592233014	.	A:0:C:97:G:0:T:3:N:0:O:3	.	0,54,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	9885	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:98:C:0:G:3:T:0:N:0:O:5	.	3,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:69:T:0:N:0:O:2	.	2,17,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:78:G:0:T:2:N:0:O:11	.	2,33,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	10130	A	T	A	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:196:C:0:G:0:T:4:N:0:O:1	.	4,111,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:0:T:108:N:0:O:1	.	0,64,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.030701754385964914	.	A:7:C:0:G:219:T:0:N:0:O:2	.	7,77,0,151	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.07216494845360824	.	A:0:C:88:G:0:T:7:N:0:O:2	.	0,56,7,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	10523	G	C	C	17	accept high frequency variant	Pass	False	True	True	91	.	20	.	0.989010989010989	.	A:0:C:90:G:1:T:0:N:0:O:0	.	53,53,37,38	209.237	947.4	.	.	.	.	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	10528	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	0,36,1,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.02803738317757009	.	A:0:C:6:G:0:T:205:N:0:O:3	.	0,116,6,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:0:C:75:G:0:T:6:N:0:O:0	.	0,47,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07017543859649122	.	A:0:C:0:G:8:T:101:N:0:O:5	.	0,45,8,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:111:C:0:G:0:T:4:N:0:O:0	.	4,68,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:96:G:0:T:3:N:0:O:2	.	0,77,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:0:T:2:N:0:O:0	.	2,58,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11810	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	1,59,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11882	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:94:G:0:T:0:N:0:O:1	.	0,79,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11884	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,68,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11960	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0198019801980198	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,57,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11962	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:80:G:0:T:2:N:0:O:6	.	0,62,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.015384615384615384	.	A:1:C:0:G:129:T:3:N:0:O:62	.	0,69,3,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.02985074626865672	.	A:65:C:0:G:2:T:0:N:0:O:0	.	0,48,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:110:T:3:N:0:O:0	.	0,50,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12119	C	T	T	14	new position at high frequency	Pass	True	True	True	87	.	20	.	0.9655172413793104	.	A:0:C:2:G:0:T:84:N:0:O:1	.	43,45,41,42	139.237	997.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:78:G:0:T:2:N:0:O:20	.	0,63,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:4:C:0:G:121:T:0:N:0:O:0	.	4,52,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12264	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:87:T:0:N:0:O:3	.	2,16,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12523	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030307	.	A:0:C:3:G:0:T:96:N:0:O:0	.	0,53,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:71:G:0:T:4:N:0:O:1	.	0,53,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.03167420814479638	.	A:7:C:0:G:214:T:0:N:0:O:0	.	7,72,0,149	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,59,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.18823529411764706	.	A:0:C:67:G:0:T:16:N:0:O:2	.	0,67,16,18	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	0,53,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.045045045045045036	.	A:5:C:0:G:98:T:0:N:0:O:8	.	5,38,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:3:T:0:N:0:O:0	.	3,47,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	88	.	20	.	1.0	.	A:0:C:0:G:0:T:88:N:0:O:0	.	46,46,42,42	399.386	1232.6	.	.	.	.	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.020408163265306117	.	A:2:C:95:G:0:T:0:N:0:O:1	.	0,57,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:84:G:0:T:3:N:0:O:2	.	0,58,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0198019801980198	.	A:2:C:0:G:95:T:0:N:0:O:4	.	2,25,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14545	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:92:C:0:G:0:T:2:N:0:O:2	.	1,28,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:98:G:0:T:2:N:0:O:8	.	0,82,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,66,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	14975	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:111:G:0:T:4:N:0:O:0	.	2,61,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.15384615384615385	.	A:0:C:43:G:0:T:8:N:0:O:1	.	0,22,8,30	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	15985	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,54,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:98:G:0:T:3:N:0:O:5	.	0,69,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086027	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,58,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	16501	G	A	G	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0189873417721519	.	A:3:C:0:G:119:T:0:N:0:O:36	.	3,92,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:0:G:3:T:91:N:0:O:0	.	3,41,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:0:C:0:G:94:T:2:N:0:O:0	.	0,38,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:78:T:0:N:0:O:2	.	3,18,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:0:G:4:T:71:N:0:O:1	.	0,27,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:0:G:2:T:0:N:0:O:0	.	0,17,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376805	.	A:67:C:0:G:2:T:0:N:0:O:0	.	0,2,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	0,49,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.02884615384615385	.	A:100:C:3:G:1:T:0:N:0:O:0	.	3,41,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:0:C:76:G:0:T:4:N:0:O:5	.	0,65,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,33,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.02307692307692308	.	A:3:C:0:G:0:T:113:N:0:O:14	.	0,56,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:0:G:0:T:2:N:0:O:3	.	0,56,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17667	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:73:T:0:N:0:O:0	.	2,27,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168683	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,41,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:5:C:0:G:107:T:0:N:0:O:1	.	0,57,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:70:T:0:N:0:O:1	.	2,19,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	18086	C	A	A	14	new position at high frequency	Pass	False	True	True	110	.	20	.	0.9727272727272728	.	A:107:C:2:G:0:T:0:N:0:O:1	.	61,61,46,49	210.0	1476.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.034188034188034185	.	A:0:C:113:G:0:T:4:N:0:O:0	.	0,70,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	18365	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:0:C:5:G:0:T:132:N:0:O:5	.	0,80,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,13,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	18991	A	T	A	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.026143790849673203	.	A:148:C:0:G:0:T:4:N:0:O:1	.	4,47,0,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19065	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:97:N:0:O:3	.	0,73,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984492	.	A:4:C:0:G:125:T:0:N:0:O:0	.	4,22,0,107	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19286	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.020408163265306117	.	A:1:C:0:G:48:T:0:N:0:O:0	.	0,24,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,10,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19298	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	0,20,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:0:C:2:G:0:T:44:N:0:O:0	.	0,26,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.020408163265306117	.	A:1:C:0:G:48:T:0:N:0:O:0	.	1,16,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19475	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:0:T:43:N:0:O:2	.	0,26,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:2:C:0:G:48:T:0:N:0:O:1	.	2,19,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19519	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.020408163265306117	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,21,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621626	.	A:4:C:0:G:0:T:145:N:0:O:36	.	0,69,4,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:110:C:0:G:0:T:4:N:0:O:1	.	0,60,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:0:G:3:T:67:N:0:O:1	.	0,27,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,52,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222227	.	A:4:C:0:G:175:T:0:N:0:O:1	.	4,45,0,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:83:C:0:G:2:T:0:N:0:O:6	.	2,29,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	20661	T	A	T	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:3:C:0:G:0:T:138:N:0:O:2	.	0,79,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.08064516129032258	.	A:0:C:0:G:51:T:5:N:0:O:6	.	0,43,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:76:G:0:T:3:N:0:O:0	.	0,45,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	21334	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.02985074626865672	.	A:2:C:0:G:64:T:0:N:0:O:1	.	2,29,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.040816326530612235	.	A:0:C:93:G:0:T:4:N:0:O:1	.	0,56,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	2,12,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0396039603960396	.	A:96:C:0:G:4:T:0:N:0:O:1	.	4,34,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.050420168067226885	.	A:6:C:0:G:105:T:0:N:0:O:8	.	6,50,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:103:T:0:N:0:O:0	.	4,47,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	22165	T	A	T	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.02247191011235955	.	A:4:C:0:G:0:T:160:N:0:O:14	.	2,79,2,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	22208	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.02259887005649717	.	A:0:C:173:G:0:T:4:N:0:O:0	.	0,97,4,80	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.033057851239669415	.	A:0:C:0:G:4:T:117:N:0:O:0	.	4,43,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:3:G:0:T:132:N:0:O:11	.	0,104,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	22313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:99:G:0:T:5:N:0:O:0	.	0,51,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:3:G:0:T:77:N:0:O:1	.	0,71,3,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	22988	G	C	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:2:C:3:G:128:T:0:N:0:O:0	.	2,60,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:103:G:0:T:3:N:0:O:19	.	0,105,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:58:C:0:G:2:T:0:N:0:O:0	.	0,26,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	0.9097744360902256	.	A:1:C:0:G:121:T:0:N:0:O:11	.	54,66,67,67	277.711	1682.2	.	.	.	.	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.07547169811320754	.	A:8:C:0:G:91:T:0:N:0:O:7	.	7,31,1,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23598	A	C	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.028571428571428567	.	A:101:C:3:G:0:T:0:N:0:O:1	.	0,67,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23644	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086027	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,51,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,12,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.0989010989010989	.	A:0:C:81:G:0:T:9:N:0:O:1	.	0,65,9,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0396039603960396	.	A:0:C:4:G:0:T:97:N:0:O:0	.	0,61,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:0:T:75:N:0:O:0	.	2,12,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.040404040404040414	.	A:4:C:0:G:95:T:0:N:0:O:0	.	3,12,1,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:0:C:70:G:0:T:5:N:0:O:1	.	0,50,5,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.07936507936507936	.	A:0:C:50:G:1:T:5:N:0:O:7	.	0,51,5,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030307	.	A:3:C:0:G:93:T:0:N:0:O:3	.	3,20,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:6:C:0:G:99:T:0:N:0:O:1	.	6,68,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24569	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.024590163934426233	.	A:119:C:0:G:3:T:0:N:0:O:0	.	3,54,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:2:G:0:T:0:N:0:O:1	.	2,53,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	0,73,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086027	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,48,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:0:G:111:T:4:N:0:O:0	.	4,68,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:0:G:4:T:98:N:0:O:2	.	0,82,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24981	C	A	N	18	ambiguous base in consensus	Check	False	False	False	132	.	20	.	0.015151515151515154	.	A:2:C:95:G:0:T:0:N:0:O:35	.	2,109,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24981	C	A	N	18	ambiguous base in consensus	Check	False	False	False	132	.	20	.	0.015151515151515154	.	A:2:C:95:G:0:T:0:N:0:O:35	.	2,109,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	52	.	20	.	0.07692307692307693	.	A:0:C:4:G:0:T:48:N:0:O:0	.	4,42,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	25145	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.024590163934426233	.	A:3:C:0:G:119:T:0:N:0:O:0	.	3,75,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.028571428571428567	.	A:3:C:0:G:102:T:0:N:0:O:0	.	3,59,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.02884615384615385	.	A:100:C:3:G:0:T:1:N:0:O:0	.	3,65,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:0:G:4:T:90:N:0:O:1	.	4,35,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0396039603960396	.	A:97:C:0:G:0:T:4:N:0:O:0	.	4,52,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25553	C	G	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.017543859649122806	.	A:0:C:49:G:1:T:0:N:0:O:7	.	1,16,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	118	.	20	.	0.9915254237288136	.	A:0:C:0:G:0:T:117:N:0:O:1	.	58,59,59,59	210.0	1888.4	.	.	.	.	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:98:G:0:T:0:N:0:O:8	.	3,66,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030307	.	A:1:C:2:G:63:T:0:N:0:O:0	.	2,17,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:89:G:0:T:3:N:0:O:6	.	2,56,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:85:G:0:T:0:N:0:O:51	.	2,47,1,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.07142857142857142	.	A:37:C:3:G:0:T:0:N:0:O:2	.	1,31,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,63,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:1:C:83:G:0:T:2:N:0:O:2	.	1,49,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,32,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:4:C:143:G:0:T:0:N:0:O:10	.	4,79,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26422	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:1:G:0:T:76:N:0:O:1	.	0,68,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:0:C:93:G:0:T:7:N:0:O:1	.	0,68,7,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,47,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.035294117647058816	.	A:81:C:0:G:3:T:0:N:0:O:1	.	3,28,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:84:T:0:N:0:O:1	.	3,30,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.030927835051546393	.	A:0:C:187:G:0:T:6:N:0:O:1	.	0,162,6,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26600	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:77:G:0:T:2:N:0:O:0	.	2,44,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:0:T:2:N:0:O:2	.	1,32,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:92:C:0:G:0:T:3:N:0:O:1	.	3,28,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.03658536585365853	.	A:3:C:0:G:79:T:0:N:0:O:0	.	3,11,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882356	.	A:2:C:0:G:66:T:0:N:0:O:0	.	2,10,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.054054054054054064	.	A:0:C:70:G:0:T:4:N:0:O:0	.	0,61,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:81:G:0:T:2:N:0:O:1	.	0,68,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	27108	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:1:G:2:T:81:N:0:O:1	.	0,52,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882356	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,54,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:3:T:0:N:0:O:0	.	2,37,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	27561	G	T	T	17	accept high frequency variant	Pass	False	True	True	104	.	20	.	0.9807692307692308	.	A:0:C:0:G:0:T:102:N:0:O:2	.	53,55,49,49	271.455	1850.2	.	.	.	.	.	.	.	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:77:T:0:N:0:O:1	.	2,17,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:2:C:94:G:0:T:0:N:0:O:11	.	1,59,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28687	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.02469135802469136	.	A:0:C:78:G:0:T:2:N:0:O:1	.	0,55,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:0:G:2:T:0:N:0:O:1	.	2,2,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:73:G:0:T:4:N:0:O:4	.	0,33,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:4:C:0:G:115:T:0:N:0:O:0	.	4,14,0,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28926	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,24,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.02985074626865672	.	A:0:C:61:G:0:T:2:N:0:O:4	.	0,21,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:73:N:0:O:0	.	0,20,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.05263157894736842	.	A:0:C:106:G:0:T:6:N:0:O:2	.	0,93,6,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:88:T:0:N:0:O:2	.	1,51,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	29189	C	A	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:74:G:0:T:0:N:0:O:0	.	0,34,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	29190	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222227	.	A:87:C:0:G:0:T:2:N:0:O:1	.	0,23,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:85:T:0:N:0:O:2	.	1,38,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	29732	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:110:G:0:T:0:N:0:O:1	.	0,52,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00106	artic-pipeline	NB04	MN908947.3	29733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.040816326530612235	.	A:0:C:94:G:0:T:4:N:0:O:0	.	0,58,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00106	artic-pipeline	NB04	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:100:T:0:N:0:O:3	.	3,31,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	75	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:25:G:0:T:1:N:0:O:3	.	1,6,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	110	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,4,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	121	C	G	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:1:T:0:N:0:O:0	.	0,2,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	138	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:0:T:1:N:0:O:0	.	0,2,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	24	.	20	.	0.9166666666666666	.	A:0:C:0:G:0:T:22:N:0:O:2	.	2,4,20,20	418.474	1329.6	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:2:G:0:T:98:N:0:O:6	.	2,21,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:0:G:120:T:5:N:0:O:1	.	1,38,4,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	137	.	20	.	0.9927007299270073	.	A:0:C:0:G:0:T:136:N:0:O:1	.	80,81,56,56	70.0	1346.6	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:122:G:0:T:0:N:0:O:3	.	3,69,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:50:G:0:T:2:N:0:O:3	.	0,41,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:2:C:0:G:61:T:0:N:0:O:2	.	2,11,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1189	A	C	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:104:C:3:G:0:T:0:N:0:O:2	.	3,50,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:5:C:0:G:201:T:0:N:0:O:0	.	5,88,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.04	.	A:9:C:0:G:215:T:0:N:0:O:1	.	9,106,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:98:G:0:T:4:N:0:O:1	.	0,50,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:100:N:0:O:3	.	0,46,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:104:N:0:O:0	.	0,48,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:3:T:0:N:0:O:0	.	0,39,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:1:T:0:N:0:O:0	.	0,0,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.20689655172413793	.	A:24:C:0:G:92:T:0:N:0:O:0	.	24,49,0,67	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:0:T:69:N:0:O:4	.	0,42,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	2317	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.016129032258064516	.	A:98:C:0:G:0:T:2:N:0:O:24	.	0,47,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	2388	C	T	N	12	misc mixed variant	Check	False	False	False	130	.	20	.	0.5076923076923077	.	A:0:C:64:G:0:T:66:N:0:O:0	.	13,35,53,95	.	154.9	.	.	.	mismatch(n+s)	mixed position	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:88:T:0:N:0:O:1	.	0,24,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:128:T:0:N:0:O:3	.	3,51,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.050955414012738856	.	A:141:C:0:G:8:T:0:N:0:O:8	.	8,77,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	2850	T	C	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:3:G:0:T:144:N:0:O:0	.	0,93,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	114	.	20	.	0.7192982456140351	.	A:0:C:0:G:0:T:82:N:0:O:32	.	41,73,41,41	63.216	1375.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:0:G:79:T:4:N:0:O:16	.	0,64,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:91:C:0:G:3:T:0:N:0:O:3	.	3,13,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,38,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:2:C:0:G:52:T:0:N:0:O:3	.	2,25,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:99:G:0:T:4:N:0:O:2	.	0,82,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	3701	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:88:T:2:N:0:O:1	.	1,36,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	3975	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:112:C:0:G:3:T:0:N:0:O:3	.	3,78,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	4367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02358490566037736	.	A:0:C:203:G:0:T:5:N:0:O:4	.	0,166,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.05504587155963303	.	A:0:C:0:G:195:T:12:N:0:O:11	.	0,168,12,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.022222222222222223	.	A:5:C:0:G:216:T:1:N:0:O:3	.	0,126,5,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.028037383177570093	.	A:0:C:191:G:0:T:6:N:0:O:17	.	1,137,5,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.03937007874015748	.	A:112:C:0:G:0:T:5:N:0:O:10	.	0,71,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:0:T:2:N:0:O:0	.	2,22,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5300	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,25,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:2:G:0:T:1:N:0:O:0	.	2,41,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	0,32,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:88:T:0:N:0:O:4	.	0,42,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.02843601895734597	.	A:0:C:201:G:0:T:6:N:0:O:4	.	0,120,6,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.08333333333333333	.	A:0:C:66:G:0:T:6:N:0:O:0	.	0,58,6,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:2:G:0:T:65:N:0:O:0	.	0,48,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.07207207207207207	.	A:0:C:101:G:0:T:8:N:0:O:2	.	0,84,8,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,33,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:132:G:0:T:3:N:0:O:5	.	0,91,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,55,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6307	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:2:C:0:G:53:T:0:N:0:O:2	.	2,35,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:4:G:0:T:111:N:0:O:0	.	0,83,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6618	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:0:G:126:T:0:N:0:O:4	.	1,71,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	6696	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:89:G:0:T:2:N:0:O:20	.	1,72,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.018957345971563982	.	A:195:C:0:G:4:T:1:N:0:O:11	.	4,63,0,148	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:66:C:0:G:0:T:4:N:0:O:0	.	0,40,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	7155	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:93:G:0:T:2:N:0:O:5	.	0,68,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	7156	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	0,66,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:85:N:0:O:0	.	2,26,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	7468	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,48,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.11538461538461539	.	A:9:C:0:G:68:T:0:N:0:O:1	.	9,21,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:61:G:0:T:2:N:0:O:2	.	0,46,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:4:G:0:T:92:N:0:O:4	.	0,43,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:104:N:0:O:0	.	0,56,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:106:N:0:O:0	.	0,71,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:1:G:0:T:37:N:0:O:0	.	1,37,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	8628	A	T	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:192:C:0:G:1:T:4:N:0:O:0	.	2,76,2,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.08823529411764706	.	A:6:C:0:G:60:T:0:N:0:O:2	.	6,7,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:4:C:0:G:0:T:112:N:0:O:9	.	4,61,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:1:C:101:G:0:T:3:N:0:O:4	.	0,71,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:0:G:128:T:3:N:0:O:1	.	0,87,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:0:C:156:G:0:T:4:N:0:O:6	.	0,142,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.028409090909090908	.	A:0:C:168:G:0:T:5:N:0:O:3	.	0,154,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	9796	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:71:C:0:G:2:T:0:N:0:O:1	.	0,51,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	2,26,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	10113	T	C	T	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.02262443438914027	.	A:0:C:5:G:0:T:215:N:0:O:1	.	1,121,4,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	10129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:5:G:0:T:187:N:0:O:3	.	0,131,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:77:T:0:N:0:O:0	.	3,29,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	10507	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.16666666666666666	.	A:0:C:115:G:0:T:23:N:0:O:0	.	8,69,15,69	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:0:T:3:N:0:O:0	.	0,73,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05128205128205128	.	A:0:C:0:G:108:T:6:N:0:O:3	.	6,65,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:80:N:0:O:7	.	0,61,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	10995	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:2:G:0:T:0:N:0:O:2	.	0,25,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	11267	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:120:T:0:N:0:O:0	.	2,94,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	11495	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	0,80,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:70:C:0:G:2:T:0:N:0:O:1	.	1,57,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	12110	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,50,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:74:T:0:N:0:O:19	.	0,73,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:98:G:0:T:4:N:0:O:0	.	4,40,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:1:C:93:G:0:T:4:N:0:O:1	.	4,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12437	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	1,45,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12452	C	A	C	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.028089887640449437	.	A:5:C:167:G:0:T:0:N:0:O:6	.	0,74,5,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12453	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:1:C:162:G:0:T:4:N:0:O:2	.	0,78,4,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:79:G:0:T:0:N:0:O:2	.	0,30,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.10526315789473684	.	A:0:C:51:G:0:T:6:N:0:O:0	.	0,33,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:103:C:0:G:4:T:0:N:0:O:4	.	4,50,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13009	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,45,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:67:C:0:G:2:T:0:N:0:O:0	.	2,13,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.10465116279069768	.	A:0:C:77:G:0:T:9:N:0:O:0	.	0,73,9,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:6:C:0:G:76:T:0:N:0:O:7	.	6,25,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:1:N:0:O:0	.	2,29,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,35,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:79:C:0:G:3:T:1:N:0:O:0	.	3,32,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:126:T:0:N:0:O:3	.	3,21,0,111	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:96:C:0:G:1:T:2:N:0:O:6	.	0,51,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,34,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:109:T:3:N:0:O:0	.	3,46,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:97:T:0:N:0:O:3	.	2,39,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:60:G:0:T:2:N:0:O:1	.	0,50,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	0,48,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	96	.	20	.	0.9895833333333334	.	A:0:C:0:G:0:T:95:N:0:O:1	.	44,45,51,51	315.654	1090.1	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	14676	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	0,50,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:4:G:0:T:100:N:0:O:1	.	0,61,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:97:T:0:N:0:O:0	.	4,25,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,23,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:68:N:0:O:2	.	0,64,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	15355	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:113:T:1:N:0:O:0	.	0,65,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:115:C:0:G:3:T:0:N:0:O:1	.	3,63,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.01639344262295082	.	A:1:C:0:G:0:T:43:N:0:O:17	.	0,36,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.11627906976744186	.	A:0:C:37:G:0:T:5:N:0:O:1	.	0,23,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	16093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	1,38,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,54,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:95:T:2:N:0:O:0	.	0,37,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	16629	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:68:T:0:N:0:O:0	.	2,49,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:45:N:0:O:2	.	0,33,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.06382978723404255	.	A:0:C:0:G:6:T:84:N:0:O:4	.	0,34,6,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.04081632653061224	.	A:6:C:0:G:112:T:0:N:0:O:29	.	0,43,6,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:1:C:87:G:0:T:2:N:0:O:0	.	0,34,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.02197802197802198	.	A:0:C:178:G:0:T:4:N:0:O:0	.	0,45,4,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17120	T	C	T	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:0:C:5:G:0:T:183:N:0:O:1	.	1,59,4,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17133	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:80:G:0:T:1:N:0:O:2	.	0,55,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17135	C	A	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:65:G:0:T:0:N:0:O:0	.	0,55,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:86:C:0:G:2:T:0:N:0:O:3	.	2,7,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:0:T:82:N:0:O:2	.	2,10,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17280	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:1:C:0:G:129:T:3:N:0:O:0	.	3,42,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:0:G:2:T:81:N:0:O:0	.	0,48,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:0:C:64:G:0:T:5:N:0:O:4	.	0,45,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:83:G:0:T:2:N:0:O:3	.	0,39,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.08045977011494253	.	A:0:C:77:G:0:T:7:N:0:O:3	.	1,39,6,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:142:G:0:T:3:N:0:O:4	.	0,79,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:64:G:0:T:2:N:0:O:2	.	0,43,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:89:C:0:G:0:T:2:N:0:O:7	.	0,41,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.07079646017699115	.	A:8:C:0:G:103:T:0:N:0:O:2	.	0,68,8,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17849	G	C	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:120:T:0:N:0:O:1	.	0,63,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	2,16,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	18014	C	A	C	16	ignore low frequency variant	Pass	False	False	True	253	.	20	.	0.019762845849802372	.	A:5:C:243:G:0:T:0:N:0:O:5	.	0,139,5,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	18016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.022321428571428572	.	A:0:C:218:G:0:T:5:N:0:O:1	.	0,132,5,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,19,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:45:C:0:G:0:T:2:N:0:O:2	.	0,22,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.03496503496503497	.	A:5:C:0:G:135:T:0:N:0:O:3	.	5,25,0,118	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	19332	T	G	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:1:T:42:N:0:O:2	.	0,18,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	19438	C	A	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:2:C:62:G:0:T:0:N:0:O:1	.	0,31,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	19442	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:0:T:43:N:0:O:5	.	0,30,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:34:G:0:T:2:N:0:O:0	.	0,23,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	19506	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:2:G:0:T:57:N:0:O:3	.	0,31,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:101:C:0:G:0:T:3:N:0:O:2	.	0,54,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:0:G:2:T:72:N:0:O:3	.	0,30,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	20011	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,51,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:0:C:0:G:5:T:96:N:0:O:1	.	5,59,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:80:C:0:G:5:T:0:N:0:O:1	.	5,43,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.03597122302158273	.	A:134:C:0:G:5:T:0:N:0:O:0	.	5,87,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:92:T:0:N:0:O:2	.	3,49,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:105:G:0:T:3:N:0:O:13	.	3,72,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:105:G:0:T:3:N:0:O:1	.	0,48,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:117:T:0:N:0:O:0	.	3,30,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	0,4,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:1:G:2:T:70:N:0:O:0	.	2,12,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:0:G:68:T:3:N:0:O:8	.	0,64,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:72:G:0:T:3:N:0:O:1	.	0,49,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:82:G:0:T:3:N:0:O:0	.	0,56,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:1:G:87:T:0:N:0:O:0	.	2,42,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:0:C:1:G:0:T:36:N:0:O:25	.	1,52,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:0:T:2:N:0:O:1	.	0,56,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:95:G:0:T:4:N:0:O:1	.	0,46,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:0:T:2:N:0:O:0	.	0,26,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:96:T:0:N:0:O:1	.	4,15,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:0:T:78:N:0:O:23	.	0,78,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:3:G:0:T:125:N:0:O:0	.	0,56,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:0:T:3:N:0:O:0	.	2,44,1,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:76:G:0:T:3:N:0:O:6	.	2,19,1,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:80:G:0:T:3:N:0:O:3	.	0,67,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:76:N:0:O:1	.	0,62,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:0:G:2:T:79:N:0:O:1	.	1,30,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:146:C:0:G:3:T:0:N:0:O:2	.	3,84,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:115:T:0:N:0:O:1	.	0,81,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:3:T:121:N:0:O:0	.	3,57,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	22647	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:3:G:0:T:145:N:0:O:1	.	0,74,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:118:G:0:T:4:N:0:O:0	.	0,69,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,30,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	135	.	20	.	0.9185185185185185	.	A:0:C:0:G:124:T:0:N:0:O:11	.	69,80,55,55	335.463	1492.3	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	23679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,50,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,32,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.09166666666666666	.	A:0:C:109:G:0:T:11:N:0:O:0	.	0,97,11,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:106:G:0:T:3:N:0:O:2	.	2,67,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:152:C:0:G:0:T:5:N:0:O:0	.	5,91,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:5:C:0:G:0:T:92:N:0:O:0	.	5,44,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:122:G:0:T:0:N:0:O:5	.	3,66,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,86,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:0:C:51:G:1:T:3:N:0:O:9	.	1,53,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24246	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	1,46,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,17,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:0:G:91:T:0:N:0:O:3	.	4,14,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:2:C:133:G:0:T:3:N:0:O:4	.	0,73,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:3:G:0:T:0:N:0:O:0	.	3,46,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:63:C:0:G:2:T:0:N:0:O:1	.	1,6,1,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:93:T:0:N:0:O:16	.	3,39,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	3,38,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:5:C:0:G:95:T:0:N:0:O:0	.	0,59,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:0:G:5:T:98:N:0:O:3	.	0,62,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:4:G:0:T:104:N:0:O:1	.	0,61,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	1,32,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	0,1,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:81:C:0:G:2:T:0:N:0:O:5	.	2,21,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:0:T:2:N:0:O:1	.	2,47,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:92:N:0:O:0	.	2,40,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	113	.	20	.	1.0	.	A:0:C:0:G:0:T:113:N:0:O:0	.	53,53,60,60	280.0	1907.7	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:4:C:93:G:0:T:0:N:0:O:13	.	4,62,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:64:T:0:N:0:O:1	.	2,15,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.046875	.	A:6:C:83:G:0:T:0:N:0:O:39	.	6,53,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.1044776119402985	.	A:56:C:7:G:0:T:0:N:0:O:4	.	2,44,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:2:G:0:T:83:N:0:O:0	.	1,37,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:0:G:3:T:0:N:0:O:0	.	3,44,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:0:N:0:O:1	.	2,38,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,30,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:89:G:0:T:5:N:0:O:38	.	0,107,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:4:C:0:G:83:T:0:N:0:O:0	.	4,26,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.024752475247524754	.	A:0:C:5:G:0:T:197:N:0:O:0	.	0,150,5,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:91:C:0:G:0:T:3:N:0:O:2	.	3,26,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.11627906976744186	.	A:10:C:0:G:76:T:0:N:0:O:0	.	10,13,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:77:G:0:T:3:N:0:O:1	.	0,61,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	26825	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,49,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,32,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,75,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.02702702702702703	.	A:180:C:0:G:0:T:5:N:0:O:0	.	1,90,4,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:82:G:0:T:0:N:0:O:1	.	3,57,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:1:T:0:N:0:O:1	.	1,7,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:55:T:0:N:0:O:2	.	2,13,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	27903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:84:G:0:T:2:N:0:O:6	.	0,54,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28140	T	C	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.017142857142857144	.	A:0:C:3:G:0:T:143:N:0:O:29	.	1,135,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	2,55,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:1:T:69:N:0:O:1	.	0,30,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:91:G:0:T:2:N:0:O:16	.	0,32,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28508	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:3:G:0:T:0:N:0:O:0	.	3,32,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:4:G:0:T:90:N:0:O:0	.	0,51,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28725	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:0:C:191:G:0:T:4:N:0:O:5	.	0,68,4,132	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	28818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:56:G:0:T:2:N:0:O:2	.	0,17,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:0:C:43:G:0:T:2:N:0:O:2	.	0,17,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	1,18,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	28867	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:0:C:1:G:0:T:47:N:0:O:14	.	0,29,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:57:G:0:T:2:N:0:O:1	.	0,13,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:105:N:0:O:1	.	0,63,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:95:N:0:O:5	.	0,63,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:50:C:0:G:2:T:0:N:0:O:0	.	1,8,1,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:58:C:0:G:2:T:0:N:0:O:0	.	1,3,1,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.049586776859504134	.	A:6:C:0:G:114:T:0:N:0:O:1	.	5,22,1,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:124:C:0:G:3:T:1:N:0:O:6	.	3,32,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:4:C:0:G:118:T:0:N:0:O:19	.	4,39,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:112:T:0:N:0:O:1	.	3,60,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:1:C:3:G:76:T:0:N:0:O:4	.	3,20,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00107	artic-pipeline	NB05	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	301	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00107	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:71:G:0:T:4:N:0:O:0	.	0,10,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:52:G:0:T:2:N:0:O:2	.	0,18,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	106	.	20	.	0.9339622641509434	.	A:0:C:0:G:1:T:99:N:0:O:6	.	10,16,89,90	70.0	2606.9	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:0:T:93:N:0:O:0	.	3,4,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	439	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:70:C:0:G:2:T:0:N:0:O:0	.	0,3,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	676	C	T	T	14	new position at high frequency	Pass	False	True	True	284	.	20	.	1.0	.	A:0:C:0:G:0:T:284:N:0:O:0	.	96,96,188,188	70.0	1264.0	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	1,17,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:100:T:0:N:0:O:1	.	2,34,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	835	C	G	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:97:G:2:T:0:N:0:O:2	.	0,59,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1005	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:27:C:0:G:1:T:0:N:0:O:1	.	0,10,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:40:T:0:N:0:O:1	.	1,13,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:2:C:0:G:36:T:0:N:0:O:9	.	1,11,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:74:C:0:G:3:T:0:N:0:O:0	.	2,58,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:35:T:0:N:0:O:4	.	1,17,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1338	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:128:T:1:N:0:O:0	.	3,29,0,103	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:141:C:0:G:0:T:3:N:0:O:0	.	3,33,0,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:0:C:145:G:4:T:0:N:0:O:1	.	4,39,0,111	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,41,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	0,37,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	236	.	20	.	0.0211864406779661	.	A:0:C:228:G:0:T:5:N:0:O:3	.	0,95,5,141	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:74:C:3:G:0:T:0:N:0:O:0	.	2,45,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:92:T:0:N:0:O:5	.	1,41,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	0,18,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:95:C:0:G:3:T:0:N:0:O:0	.	1,38,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	0,2,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	0,0,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.05511811023622047	.	A:7:C:0:G:118:T:0:N:0:O:2	.	7,26,0,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:0:T:86:N:0:O:1	.	3,32,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	1,18,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:131:C:3:G:0:T:0:N:0:O:0	.	3,59,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:123:C:0:G:3:T:0:N:0:O:0	.	3,42,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:128:C:0:G:3:T:0:N:0:O:4	.	3,58,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:66:G:0:T:2:N:0:O:3	.	0,60,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	112	.	20	.	0.6607142857142857	.	A:0:C:0:G:0:T:74:N:0:O:38	.	29,67,45,45	56.932	1290.2	.	.	.	.	mixed position	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:0:G:82:T:4:N:0:O:13	.	0,53,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	3146	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:72:T:0:N:0:O:2	.	0,44,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:3:G:0:T:73:N:0:O:0	.	0,30,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:0:T:75:N:0:O:1	.	0,27,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	0,1,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:100:G:0:T:4:N:0:O:1	.	0,70,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:73:T:0:N:0:O:2	.	0,36,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:52:G:0:T:2:N:0:O:0	.	0,47,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	3939	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:2:C:0:G:95:T:0:N:0:O:18	.	1,5,1,110	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.03070175438596491	.	A:7:C:0:G:215:T:0:N:0:O:6	.	7,44,0,184	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,37,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.053475935828877004	.	A:0:C:0:G:154:T:10:N:0:O:23	.	0,128,10,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.03571428571428571	.	A:130:C:0:G:0:T:5:N:0:O:5	.	0,57,5,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:3:T:115:N:0:O:0	.	0,75,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5229	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	0,22,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:0:T:93:N:0:O:0	.	2,43,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:2:G:0:T:0:N:0:O:0	.	2,52,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5605	G	A	G	16	ignore low frequency variant	Pass	False	False	True	255	.	20	.	0.0196078431372549	.	A:5:C:0:G:227:T:0:N:0:O:23	.	4,125,1,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:1:G:0:T:48:N:0:O:2	.	0,48,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5677	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:83:N:0:O:1	.	1,46,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:85:G:0:T:3:N:0:O:1	.	0,51,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.1	.	A:0:C:62:G:0:T:7:N:0:O:1	.	0,50,7,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:94:N:0:O:5	.	0,51,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5755	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:87:N:0:O:0	.	2,31,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:72:N:0:O:1	.	0,45,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	2,13,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:90:G:0:T:2:N:0:O:9	.	0,91,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:0:C:89:G:0:T:6:N:0:O:1	.	0,72,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,42,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:103:G:0:T:4:N:0:O:0	.	3,66,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:93:N:0:O:1	.	1,74,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6427	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:84:N:0:O:10	.	0,38,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:110:C:0:G:4:T:0:N:0:O:0	.	4,50,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6575	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,62,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6632	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,36,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6706	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:90:G:0:T:2:N:0:O:7	.	2,61,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:77:T:0:N:0:O:2	.	3,42,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.03296703296703297	.	A:171:C:0:G:6:T:0:N:0:O:5	.	6,63,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,11,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:71:C:0:G:3:T:0:N:0:O:1	.	0,26,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.20754716981132076	.	A:41:C:0:G:1:T:11:N:0:O:0	.	0,26,11,27	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7033	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	0,26,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:5:C:0:G:81:T:0:N:0:O:0	.	5,20,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	7592	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,40,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:72:G:1:T:2:N:0:O:15	.	1,67,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7717	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,57,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:0:G:3:T:0:N:0:O:0	.	3,34,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:93:C:0:G:4:T:0:N:0:O:2	.	4,31,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:0:C:5:G:0:T:109:N:0:O:1	.	0,42,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:0:T:102:N:0:O:0	.	0,44,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	2,43,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8769	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,52,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8887	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:0:T:2:N:0:O:2	.	2,11,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:80:G:0:T:2:N:0:O:2	.	2,5,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:81:T:1:N:0:O:3	.	5,10,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	8947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.021739130434782608	.	A:0:C:225:G:0:T:5:N:0:O:0	.	0,110,5,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:6:C:0:G:0:T:92:N:0:O:3	.	6,35,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9199	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	0,32,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:98:N:0:O:2	.	0,35,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:95:G:0:T:2:N:0:O:3	.	0,41,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:0:T:3:N:0:O:1	.	0,52,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.04819277108433735	.	A:0:C:151:G:0:T:8:N:0:O:7	.	0,108,8,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9629	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	1,41,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9797	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:81:T:0:N:0:O:0	.	3,48,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,35,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:77:T:0:N:0:O:0	.	3,16,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:81:G:0:T:2:N:0:O:7	.	2,23,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	10010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,62,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	10080	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,52,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:0:C:79:G:0:T:5:N:0:O:1	.	0,36,5,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	10684	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,39,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	10823	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:126:C:0:G:3:T:0:N:0:O:0	.	3,53,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.06796116504854369	.	A:0:C:96:G:0:T:7:N:0:O:0	.	0,57,7,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:3:T:103:N:0:O:6	.	0,55,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:1:T:31:N:0:O:0	.	0,7,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11100	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:0:T:75:N:0:O:1	.	2,38,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11353	A	C	A	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.031055900621118012	.	A:156:C:5:G:0:T:0:N:0:O:0	.	5,71,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:46:T:0:N:0:O:1	.	1,37,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11450	C	A	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:1:C:48:G:0:T:0:N:0:O:3	.	1,41,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:0:G:0:T:1:N:0:O:1	.	1,29,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11527	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:45:T:1:N:0:O:0	.	1,35,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11609	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:97:T:0:N:0:O:4	.	2,70,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11657	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,65,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11671	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	1,20,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	11704	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:44:G:0:T:1:N:0:O:0	.	0,19,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	11712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:46:G:0:T:0:N:0:O:0	.	0,28,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11713	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:48:N:0:O:1	.	0,28,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:0:T:1:N:0:O:0	.	1,21,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11784	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:47:N:0:O:0	.	0,26,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11815	A	C	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:1:G:0:T:0:N:0:O:1	.	0,14,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11846	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	0,25,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11887	A	C	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:1:G:0:T:0:N:0:O:0	.	1,19,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11889	T	G	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:0:C:0:G:2:T:37:N:0:O:0	.	2,17,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11948	C	G	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:23:G:1:T:0:N:0:O:1	.	0,10,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11953	T	A	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:0:T:24:N:0:O:0	.	0,10,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:0:G:23:T:2:N:0:O:11	.	0,11,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12088	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,8,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12147	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:40:C:2:G:0:T:0:N:0:O:3	.	2,18,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:28:T:0:N:0:O:1	.	1,7,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,8,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12324	A	C	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:1:G:0:T:0:N:0:O:0	.	1,18,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12332	G	C	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:23:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12334	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:1:G:0:T:0:N:0:O:0	.	1,10,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12343	T	A	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:0:T:29:N:0:O:1	.	0,16,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12420	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.09090909090909091	.	A:0:C:19:G:0:T:2:N:0:O:1	.	0,15,2,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12423	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.09090909090909091	.	A:2:C:0:G:19:T:0:N:0:O:1	.	2,8,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12447	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:0:C:0:G:5:T:116:N:0:O:0	.	5,54,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12448	A	C	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.04201680672268908	.	A:114:C:5:G:0:T:0:N:0:O:0	.	5,50,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:4:G:0:T:117:N:0:O:0	.	4,53,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12451	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:117:C:4:G:0:T:0:N:0:O:8	.	4,55,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12452	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:1:C:108:G:0:T:5:N:0:O:2	.	5,59,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12552	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:0:G:81:T:2:N:0:O:0	.	1,39,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:0:C:74:G:0:T:4:N:0:O:0	.	0,54,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12845	G	C	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:118:T:0:N:0:O:1	.	0,54,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12847	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:2:G:0:T:97:N:0:O:1	.	0,57,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	12876	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	0,59,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:90:G:0:T:4:N:0:O:0	.	0,58,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	2,25,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	1,41,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.14035087719298245	.	A:0:C:49:G:0:T:8:N:0:O:0	.	0,48,8,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.06329113924050633	.	A:5:C:0:G:71:T:0:N:0:O:3	.	5,20,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13643	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.03954802259887006	.	A:0:C:168:G:0:T:7:N:0:O:2	.	2,110,5,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,33,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13785	A	C	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:122:C:3:G:0:T:0:N:0:O:2	.	3,61,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:33:C:0:G:1:T:0:N:0:O:2	.	0,1,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	3,47,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	91	.	20	.	0.989010989010989	.	A:0:C:1:G:0:T:90:N:0:O:0	.	58,59,32,32	339.929	1267.0	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	14676	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,55,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,52,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:92:T:0:N:0:O:1	.	4,23,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:3:G:0:T:65:N:0:O:2	.	0,59,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	15298	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,33,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:133:T:0:N:0:O:1	.	3,67,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.17307692307692307	.	A:0:C:43:G:0:T:9:N:0:O:0	.	0,16,9,36	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:96:G:0:T:4:N:0:O:1	.	0,47,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:77:G:0:T:2:N:0:O:2	.	0,34,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:86:N:0:O:5	.	1,29,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04878048780487805	.	A:0:C:1:G:113:T:6:N:0:O:3	.	6,55,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:5:C:0:G:87:T:0:N:0:O:2	.	5,15,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:0:G:4:T:85:N:0:O:1	.	0,50,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	0,34,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.04419889502762431	.	A:8:C:0:G:167:T:0:N:0:O:6	.	8,38,0,143	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,50,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:76:G:1:T:2:N:0:O:1	.	0,55,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,30,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,59,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,42,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:69:G:0:T:2:N:0:O:1	.	0,55,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.061946902654867256	.	A:7:C:0:G:105:T:0:N:0:O:1	.	0,73,7,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	18330	T	C	T	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:0:C:5:G:0:T:177:N:0:O:19	.	0,112,5,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	18648	T	C	T	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.023622047244094488	.	A:0:C:6:G:1:T:240:N:0:O:7	.	0,123,6,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	18730	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	0,22,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	18731	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:0:T:88:N:0:O:0	.	3,23,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:3:C:0:G:69:T:0:N:0:O:0	.	3,18,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:37:C:0:G:0:T:1:N:0:O:4	.	1,19,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	19484	C	T	N	18	ambiguous base in consensus	Check	False	False	False	66	.	20	.	0.16666666666666666	.	A:0:C:55:G:0:T:11:N:0:O:0	.	0,42,11,24	.	62.7	.	.	.	mismatch(n+s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	19563	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	1,15,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	19675	C	A	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:140:G:0:T:0:N:0:O:1	.	0,75,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:110:C:0:G:1:T:3:N:0:O:1	.	0,68,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	19900	G	T	G	16	ignore low frequency variant	Pass	False	False	True	244	.	20	.	0.020491803278688523	.	A:1:C:0:G:231:T:5:N:0:O:7	.	5,98,0,146	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	19903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	268	.	20	.	0.022388059701492536	.	A:0:C:253:G:0:T:6:N:0:O:9	.	6,108,0,160	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,47,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20055	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.06837606837606838	.	A:109:C:0:G:8:T:0:N:0:O:0	.	3,42,5,75	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:4:C:0:G:178:T:0:N:0:O:2	.	4,32,0,152	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	335	.	20	.	0.020895522388059702	.	A:0:C:7:G:0:T:316:N:0:O:12	.	2,170,5,165	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20686	G	A	G	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.04487179487179487	.	A:7:C:1:G:145:T:1:N:0:O:2	.	7,83,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.02717391304347826	.	A:178:C:0:G:5:T:0:N:0:O:1	.	5,85,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20769	T	A	T	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:4:C:1:G:0:T:180:N:0:O:15	.	4,121,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.0371900826446281	.	A:231:C:0:G:9:T:0:N:0:O:2	.	9,85,0,157	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:0:G:3:T:0:N:0:O:0	.	3,19,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:0:C:0:G:76:T:6:N:0:O:8	.	0,59,6,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:88:G:0:T:4:N:0:O:0	.	0,50,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21234	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:93:G:0:T:2:N:0:O:14	.	2,61,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:114:G:0:T:3:N:0:O:0	.	0,57,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:81:G:0:T:2:N:0:O:1	.	0,43,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:66:C:0:G:2:T:0:N:0:O:1	.	2,6,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.10638297872340426	.	A:10:C:0:G:81:T:0:N:0:O:3	.	10,24,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:84:G:0:T:4:N:0:O:3	.	3,27,1,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:90:G:0:T:4:N:0:O:8	.	0,76,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:90:N:0:O:1	.	0,74,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:117:T:0:N:0:O:6	.	3,56,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:4:C:0:G:188:T:0:N:0:O:0	.	4,107,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.03488372093023256	.	A:0:C:0:G:6:T:166:N:0:O:0	.	6,66,0,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:42:C:0:G:1:T:0:N:0:O:2	.	0,8,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.03	.	A:0:C:0:G:6:T:158:N:0:O:36	.	0,109,6,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	23321	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,53,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	119	.	20	.	0.9327731092436975	.	A:0:C:0:G:111:T:0:N:0:O:8	.	70,78,41,41	209.237	1439.5	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	23656	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:100:C:0:G:3:T:0:N:0:O:2	.	3,39,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.17757009345794392	.	A:0:C:86:G:0:T:19:N:0:O:2	.	0,56,19,51	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:0:T:116:N:0:O:0	.	3,15,0,104	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:0:C:73:G:0:T:5:N:0:O:0	.	0,49,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:43:G:0:T:2:N:0:O:9	.	0,47,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:88:T:0:N:0:O:3	.	4,15,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:88:T:0:N:0:O:2	.	3,13,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	1,3,2,106	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0365296803652968	.	A:0:C:208:G:0:T:8:N:0:O:3	.	2,134,6,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:0:N:0:O:1	.	2,46,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:0:G:100:T:0:N:0:O:0	.	0,78,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:0:G:4:T:97:N:0:O:1	.	0,77,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	24955	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:0:G:2:T:0:N:0:O:3	.	2,52,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25146	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,54,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:3:T:98:N:0:O:0	.	3,32,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25430	T	C	C	14	new position at high frequency	Pass	False	True	True	135	.	20	.	1.0	.	A:0:C:135:G:0:T:0:N:0:O:0	.	65,65,70,70	70.0	1116.1	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	0,63,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25471	G	C	G	12	misc mixed variant	Check	False	False	True	128	.	20	.	0.375	.	A:0:C:48:G:80:T:0:N:0:O:0	.	18,57,30,71	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:107:C:0:G:0:T:5:N:0:O:0	.	5,51,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:96:N:0:O:3	.	2,39,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:65:C:2:G:0:T:0:N:0:O:0	.	2,32,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.06382978723404255	.	A:43:C:3:G:0:T:0:N:0:O:1	.	0,32,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:70:C:0:G:3:T:0:N:0:O:0	.	3,17,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:81:G:0:T:3:N:0:O:5	.	3,55,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	2,54,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:1:T:2:N:0:O:0	.	0,75,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,46,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.06944444444444445	.	A:5:C:0:G:67:T:0:N:0:O:0	.	5,30,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.03255813953488372	.	A:0:C:7:G:0:T:208:N:0:O:0	.	0,161,7,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.06593406593406594	.	A:0:C:6:G:0:T:85:N:0:O:0	.	0,61,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:78:C:0:G:0:T:3:N:0:O:1	.	3,23,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.11267605633802817	.	A:8:C:0:G:63:T:0:N:0:O:0	.	8,13,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:76:G:0:T:4:N:0:O:1	.	0,64,4,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:90:C:0:G:3:T:0:N:0:O:1	.	3,46,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:91:C:0:G:2:T:0:N:0:O:5	.	2,38,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:100:G:0:T:3:N:0:O:0	.	2,50,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:73:T:0:N:0:O:1	.	2,15,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:0:C:64:G:0:T:3:N:0:O:1	.	0,54,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27224	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:81:C:0:G:2:T:0:N:0:O:4	.	2,16,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	2,31,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:84:G:0:T:0:N:0:O:3	.	2,53,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27735	C	A	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.05084745762711865	.	A:6:C:111:G:0:T:0:N:0:O:1	.	4,72,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:3:C:0:G:62:T:0:N:0:O:3	.	3,11,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.05454545454545454	.	A:6:C:0:G:103:T:0:N:0:O:1	.	6,28,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:103:C:0:G:4:T:0:N:0:O:0	.	4,26,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.10144927536231885	.	A:124:C:0:G:0:T:14:N:0:O:0	.	9,61,5,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28278	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:1:C:88:G:0:T:2:N:0:O:3	.	1,62,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:68:G:0:T:2:N:0:O:15	.	1,26,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28412	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:87:C:3:G:0:T:0:N:0:O:0	.	0,57,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.01639344262295082	.	A:2:C:88:G:0:T:0:N:0:O:32	.	2,54,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28759	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,15,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:64:G:0:T:2:N:0:O:7	.	0,20,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:58:G:0:T:2:N:0:O:3	.	0,14,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:39:G:0:T:1:N:0:O:1	.	0,14,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	119	.	20	.	1.0	.	A:119:C:0:G:0:T:0:N:0:O:0	.	16,16,103,103	183.302	2430.1	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:115:C:0:G:0:T:0:N:0:O:0	.	14,14,101,101	183.302	2430.1	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:0:C:115:G:0:T:0:N:0:O:0	.	16,16,99,99	183.302	2430.1	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,14,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	29026	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,51,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	29046	C	G	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:45:G:1:T:0:N:0:O:1	.	0,38,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	29057	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:0:T:1:N:0:O:1	.	1,3,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.07894736842105263	.	A:3:C:0:G:34:T:0:N:0:O:1	.	3,4,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	29060	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:1:T:0:N:0:O:1	.	1,13,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	29563	C	T	C	16	ignore low frequency variant	Pass	False	False	True	329	.	20	.	0.13069908814589665	.	A:0:C:271:G:0:T:43:N:0:O:15	.	27,193,16,136	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:94:T:0:N:0:O:3	.	3,25,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00110	artic-pipeline	NB08	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	307	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00110	artic-pipeline	NB08	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	58	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,3,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:2:C:0:G:0:T:25:N:0:O:2	.	0,4,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.09090909090909091	.	A:0:C:20:G:0:T:2:N:0:O:0	.	0,4,2,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	128	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:0:T:36:N:0:O:0	.	0,4,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	0,5,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	143	A	C	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:33:C:1:G:0:T:0:N:0:O:1	.	0,5,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	0,4,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	170	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:30:C:0:G:1:T:0:N:0:O:1	.	0,5,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	176	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:34:G:0:T:2:N:0:O:0	.	0,5,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	0,6,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,5,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	200	T	G	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:0:G:1:T:33:N:0:O:0	.	0,5,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	204	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,3,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	207	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:38:G:0:T:1:N:0:O:3	.	0,5,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	0,3,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	216	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	0,3,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	217	C	G	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:1:T:0:N:0:O:0	.	0,3,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	251	T	A	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:0:T:27:N:0:O:0	.	0,2,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	252	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	0,3,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	0,3,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	262	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,4,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	272	A	T	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:0:T:1:N:0:O:0	.	0,2,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	273	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:35:T:0:N:0:O:1	.	0,4,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	274	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	0,5,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	100	.	20	.	1.0	.	A:100:C:0:G:0:T:0:N:0:O:0	.	15,15,85,85	206.227	2523.1	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:129:C:0:G:4:T:0:N:0:O:1	.	4,22,0,112	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:113:T:3:N:0:O:0	.	1,27,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	0,37,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	608	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:128:G:0:T:0:N:0:O:1	.	0,47,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:75:T:0:N:0:O:7	.	2,26,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:43:T:0:N:0:O:3	.	1,11,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	2,72,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	0,9,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.06349206349206349	.	A:4:C:0:G:51:T:0:N:0:O:8	.	2,16,2,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:71:G:0:T:2:N:0:O:4	.	0,66,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.03314917127071823	.	A:6:C:0:G:174:T:0:N:0:O:1	.	5,93,1,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.03	.	A:6:C:0:G:193:T:0:N:0:O:1	.	6,116,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	2,23,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.015151515151515152	.	A:2:C:91:G:0:T:0:N:0:O:39	.	1,53,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:46:C:0:G:1:T:0:N:0:O:6	.	0,16,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	0,1,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:90:T:0:N:0:O:4	.	0,34,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,44,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	1,6,1,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:4:C:0:G:119:T:0:N:0:O:27	.	3,44,1,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	1861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:4:G:0:T:94:N:0:O:0	.	0,54,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	2130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	1,39,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:6:C:0:G:91:T:0:N:0:O:1	.	6,26,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	2335	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:0:G:3:T:119:N:0:O:1	.	0,62,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:80:T:0:N:0:O:1	.	1,28,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:92:G:0:T:2:N:0:O:6	.	0,78,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	2839	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:3:T:103:N:0:O:3	.	0,92,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:80:C:2:G:0:T:0:N:0:O:1	.	1,37,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:115:G:0:T:3:N:0:O:9	.	1,52,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:4:G:0:T:98:N:0:O:2	.	0,56,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:78:T:2:N:0:O:12	.	0,56,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	198	.	20	.	0.9393939393939394	.	A:0:C:2:G:0:T:186:N:0:O:10	.	75,84,111,114	264.923	819.4	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:79:C:0:G:2:T:0:N:0:O:2	.	2,11,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:48:C:0:G:0:T:1:N:0:O:4	.	1,30,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,31,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:108:C:0:G:5:T:0:N:0:O:1	.	5,49,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:81:N:0:O:15	.	0,50,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:5:C:0:G:76:T:0:N:0:O:0	.	0,41,5,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3851	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:126:T:0:N:0:O:15	.	0,68,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:66:G:0:T:2:N:0:O:0	.	0,63,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,59,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:57:G:0:T:2:N:0:O:4	.	0,39,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:84:C:0:G:2:T:0:N:0:O:6	.	1,22,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	4322	T	G	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:0:G:1:T:40:N:0:O:0	.	1,37,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:91:C:0:G:0:T:5:N:0:O:2	.	0,52,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:73:G:0:T:2:N:0:O:0	.	1,25,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	5167	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,46,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	5168	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,56,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	5197	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	1,54,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.12658227848101267	.	A:0:C:68:G:0:T:10:N:0:O:1	.	0,63,10,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:3:G:0:T:84:N:0:O:0	.	0,55,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:80:T:0:N:0:O:2	.	3,19,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	0.9836065573770492	.	A:0:C:0:G:0:T:120:N:0:O:2	.	62,64,58,58	69.237	981.9	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.07526881720430108	.	A:0:C:86:G:0:T:7:N:0:O:0	.	0,71,7,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:79:N:0:O:13	.	0,79,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6195	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:97:G:0:T:3:N:0:O:4	.	1,71,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,78,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,36,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:89:N:0:O:4	.	0,47,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	0,58,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.03864734299516908	.	A:190:C:0:G:8:T:1:N:0:O:8	.	6,61,2,146	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:0:C:156:G:0:T:4:N:0:O:6	.	0,90,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	7031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	0,51,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.08641975308641975	.	A:74:C:0:G:0:T:7:N:0:O:0	.	0,52,7,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	7047	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,58,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:72:G:0:T:2:N:0:O:1	.	0,52,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.10975609756097561	.	A:9:C:0:G:70:T:0:N:0:O:3	.	9,22,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	7514	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:98:C:0:G:2:T:0:N:0:O:4	.	2,49,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:72:T:0:N:0:O:0	.	3,20,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:105:N:0:O:1	.	0,71,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:78:C:0:G:2:T:0:N:0:O:3	.	2,29,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	1.0	.	A:0:C:0:G:0:T:132:N:0:O:0	.	67,67,65,65	420.0	1176.2	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	8814	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,54,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.1232876712328767	.	A:9:C:0:G:62:T:0:N:0:O:2	.	9,10,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	8906	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:2:G:0:T:60:N:0:O:0	.	2,28,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:0:T:72:N:0:O:2	.	4,20,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:0:T:113:N:0:O:2	.	0,62,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	9885	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:98:C:0:G:0:T:3:N:0:O:2	.	3,32,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.046153846153846156	.	A:3:C:0:G:62:T:0:N:0:O:0	.	3,16,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.06329113924050633	.	A:0:C:67:G:0:T:5:N:0:O:7	.	5,25,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:68:N:0:O:5	.	0,60,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.024752475247524754	.	A:0:C:5:G:0:T:194:N:0:O:3	.	1,132,4,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:77:T:0:N:0:O:1	.	3,19,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:86:N:0:O:2	.	0,31,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10449	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	2,48,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:92:G:0:T:2:N:0:O:5	.	2,47,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10492	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	1,49,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:104:T:3:N:0:O:1	.	3,67,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:5:G:0:T:72:N:0:O:9	.	0,59,5,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:0:C:94:G:0:T:6:N:0:O:1	.	1,62,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	11107	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:100:N:0:O:0	.	0,64,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:97:C:0:G:0:T:6:N:0:O:3	.	6,67,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.014354066985645933	.	A:0:C:0:G:142:T:3:N:0:O:64	.	0,97,3,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:71:C:0:G:4:T:0:N:0:O:0	.	1,57,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:86:G:0:T:2:N:0:O:24	.	0,95,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	12147	A	C	A	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.01951219512195122	.	A:192:C:4:G:0:T:0:N:0:O:9	.	4,91,0,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:4:C:0:G:126:T:0:N:0:O:5	.	4,34,0,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	133	.	20	.	0.9624060150375939	.	A:128:C:0:G:0:T:0:N:0:O:5	.	55,60,73,73	70.0	1107.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:71:G:0:T:4:N:0:O:0	.	0,54,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:92:N:0:O:2	.	0,47,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	12982	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,15,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	1,20,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:0:T:125:N:0:O:14	.	3,93,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13368	C	T	C	16	ignore low frequency variant	Pass	False	False	True	286	.	20	.	0.045454545454545456	.	A:0:C:273:G:0:T:13:N:0:O:0	.	5,159,8,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.1	.	A:0:C:71:G:0:T:8:N:0:O:1	.	0,69,8,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13486	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:0:G:82:T:2:N:0:O:0	.	2,42,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:5:C:0:G:83:T:0:N:0:O:7	.	5,32,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:97:C:0:G:5:T:0:N:0:O:1	.	5,37,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:99:G:0:T:0:N:0:O:5	.	4,44,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.078125	.	A:54:C:0:G:5:T:0:N:0:O:5	.	0,8,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:88:G:0:T:0:N:0:O:1	.	0,61,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:87:G:0:T:3:N:0:O:0	.	0,64,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	14480	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,54,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	14519	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:107:C:0:G:3:T:0:N:0:O:1	.	3,43,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	14604	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:0:G:3:T:0:N:0:O:0	.	3,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	14657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:85:G:0:T:2:N:0:O:11	.	0,69,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:95:N:0:O:3	.	0,63,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:91:T:0:N:0:O:1	.	4,28,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:0:C:3:G:0:T:65:N:0:O:0	.	0,64,3,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	15768	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:1:G:90:T:0:N:0:O:1	.	2,53,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	15930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:84:N:0:O:1	.	0,42,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.09615384615384616	.	A:1:C:46:G:0:T:5:N:0:O:0	.	0,30,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,53,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:0:G:2:T:81:N:0:O:1	.	2,28,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:0:G:3:T:76:N:0:O:4	.	2,21,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:0:G:104:T:5:N:0:O:4	.	4,45,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	16686	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:4:G:0:T:113:N:0:O:1	.	0,57,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:84:T:0:N:0:O:6	.	2,15,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:109:N:0:O:2	.	0,62,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:86:N:0:O:2	.	0,54,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:81:C:3:G:0:T:0:N:0:O:1	.	3,39,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.03825136612021858	.	A:7:C:0:G:170:T:0:N:0:O:6	.	7,40,0,143	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:0:T:72:N:0:O:4	.	2,15,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:102:C:0:G:5:T:0:N:0:O:2	.	5,49,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:66:G:0:T:2:N:0:O:3	.	0,50,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:79:G:0:T:3:N:0:O:2	.	0,37,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17705	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:4:C:0:G:195:T:0:N:0:O:1	.	4,70,0,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:63:G:0:T:3:N:0:O:0	.	0,41,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:89:C:0:G:0:T:3:N:0:O:14	.	0,42,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.08928571428571429	.	A:10:C:0:G:102:T:0:N:0:O:0	.	0,72,10,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:0:G:3:T:90:N:0:O:0	.	1,32,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18502	A	C	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:135:C:3:G:0:T:0:N:0:O:0	.	3,60,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:114:T:3:N:0:O:1	.	0,71,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:2:T:0:N:0:O:1	.	2,26,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18735	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:86:C:3:G:0:T:0:N:0:O:9	.	0,64,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	97	.	20	.	0.9484536082474226	.	A:0:C:92:G:0:T:5:N:0:O:0	.	50,50,42,47	209.237	1456.5	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	18738	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:0:G:4:T:98:N:0:O:0	.	0,54,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	1,62,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	18802	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:3:T:0:N:0:O:0	.	2,56,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.03424657534246575	.	A:5:C:0:G:140:T:0:N:0:O:1	.	5,21,0,125	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.029069767441860465	.	A:5:C:0:G:0:T:138:N:0:O:29	.	0,66,5,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:111:C:0:G:0:T:4:N:0:O:2	.	0,56,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	20091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:106:G:0:T:3:N:0:O:6	.	0,57,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.025510204081632654	.	A:5:C:0:G:187:T:0:N:0:O:4	.	5,48,0,148	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:3:T:107:N:0:O:0	.	3,50,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:96:C:0:G:2:T:0:N:0:O:5	.	2,36,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:109:C:0:G:3:T:0:N:0:O:2	.	3,92,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	20686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:83:T:2:N:0:O:0	.	2,64,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:2:C:0:G:63:T:0:N:0:O:0	.	2,40,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.0625	.	A:0:C:0:G:4:T:60:N:0:O:0	.	4,7,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21148	G	T	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:0:G:21:T:1:N:0:O:1	.	0,19,1,4	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21178	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:36:G:0:T:1:N:0:O:1	.	1,24,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:27:G:0:T:1:N:0:O:1	.	0,18,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	1,21,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21209	T	A	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:0:T:29:N:0:O:2	.	0,18,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21230	C	A	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:30:G:0:T:0:N:0:O:1	.	1,17,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21240	T	G	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:0:G:1:T:40:N:0:O:0	.	1,24,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21241	A	C	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:1:G:0:T:0:N:0:O:0	.	1,23,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21265	G	C	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:36:T:0:N:0:O:2	.	1,20,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21353	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	1,15,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21365	C	G	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:27:G:1:T:0:N:0:O:1	.	0,21,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21386	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.0625	.	A:0:C:28:G:0:T:2:N:0:O:2	.	0,23,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,2,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.09090909090909091	.	A:5:C:0:G:49:T:0:N:0:O:1	.	5,13,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:112:G:0:T:4:N:0:O:6	.	0,86,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,78,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21954	G	C	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:3:G:138:T:0:N:0:O:0	.	0,62,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	21955	T	A	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:3:C:0:G:0:T:144:N:0:O:5	.	0,71,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	22121	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	1,61,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,44,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:3:T:94:N:0:O:0	.	3,38,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:116:T:3:N:0:O:0	.	0,72,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	22641	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:129:C:0:G:3:T:0:N:0:O:0	.	3,46,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	22988	G	C	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:1:C:3:G:139:T:0:N:0:O:0	.	3,56,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:119:G:0:T:3:N:0:O:10	.	0,112,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.09523809523809523	.	A:38:C:0:G:4:T:0:N:0:O:0	.	4,12,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.08823529411764706	.	A:6:C:0:G:56:T:0:N:0:O:6	.	6,39,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:42:C:0:G:2:T:0:N:0:O:0	.	2,20,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23661	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:91:T:2:N:0:O:1	.	1,72,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.07865168539325842	.	A:0:C:82:G:0:T:7:N:0:O:0	.	0,69,7,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23996	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:109:G:0:T:0:N:0:O:2	.	1,64,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	23997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:85:G:0:T:2:N:0:O:5	.	1,66,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	129	.	20	.	1.0	.	A:0:C:0:G:0:T:129:N:0:O:0	.	60,60,69,69	280.0	741.5	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:68:G:0:T:2:N:0:O:0	.	0,55,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24233	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:96:T:0:N:0:O:7	.	2,39,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:61:G:0:T:2:N:0:O:11	.	0,68,2,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:81:T:0:N:0:O:8	.	0,58,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:91:G:0:T:1:N:0:O:1	.	2,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:0:G:119:T:3:N:0:O:4	.	3,53,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:5:C:0:G:101:T:2:N:0:O:1	.	0,64,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:4:T:99:N:0:O:2	.	0,65,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:1:G:97:T:0:N:0:O:0	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:2:G:0:T:0:N:0:O:2	.	2,59,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25424	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	0,52,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:88:N:0:O:1	.	0,38,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25499	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,49,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25702	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,59,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:63:G:0:T:2:N:0:O:8	.	1,59,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.014184397163120567	.	A:2:C:90:G:0:T:0:N:0:O:49	.	1,47,1,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.14893617021276595	.	A:38:C:7:G:0:T:0:N:0:O:2	.	0,26,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:0:C:90:G:0:T:6:N:0:O:0	.	0,61,6,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,30,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:1:N:0:O:0	.	3,39,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,40,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:103:T:0:N:0:O:1	.	3,44,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:80:T:0:N:0:O:0	.	4,27,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.052884615384615384	.	A:0:C:197:G:0:T:11:N:0:O:0	.	0,186,11,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.029045643153526972	.	A:0:C:7:G:0:T:234:N:0:O:0	.	0,197,7,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:3:T:107:N:0:O:0	.	1,69,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:86:C:0:G:0:T:5:N:0:O:3	.	5,37,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0821917808219178	.	A:6:C:0:G:67:T:0:N:0:O:0	.	6,16,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	148	.	20	.	0.9864864864864865	.	A:0:C:146:G:0:T:0:N:0:O:2	.	110,112,36,36	409.694	1750.2	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:97:C:0:G:3:T:0:N:0:O:3	.	3,24,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,18,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:91:G:0:T:5:N:0:O:1	.	0,56,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.028985507246376812	.	A:201:C:0:G:0:T:6:N:0:O:0	.	4,82,2,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:76:G:0:T:0:N:0:O:0	.	3,40,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:118:C:0:G:0:T:3:N:0:O:32	.	3,95,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	27727	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:87:G:0:T:2:N:0:O:11	.	0,54,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,18,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,60,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	28042	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,40,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	0.9916666666666667	.	A:0:C:119:G:0:T:0:N:0:O:1	.	55,56,64,64	200.692	1936.0	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	250	.	20	.	0.988	.	A:0:C:247:G:0:T:1:N:0:O:2	.	109,112,138,138	60.786	1434.5	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	28586	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:109:C:1:G:3:T:0:N:0:O:1	.	3,55,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,27,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	28753	A	G	A	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.02066115702479339	.	A:237:C:0:G:5:T:0:N:0:O:0	.	4,62,1,180	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:0:C:3:G:0:T:64:N:0:O:5	.	0,19,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	105	.	20	.	1.0	.	A:0:C:0:G:105:T:0:N:0:O:0	.	11,11,94,94	182.563	1520.9	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	28921	T	C	C	14	new position at high frequency	Pass	False	True	True	128	.	20	.	0.984375	.	A:0:C:126:G:0:T:1:N:0:O:1	.	20,21,106,107	69.237	993.5	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:0:C:110:G:0:T:6:N:0:O:3	.	0,94,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:1:G:66:T:0:N:0:O:2	.	2,7,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:44:C:0:G:1:T:0:N:0:O:3	.	0,3,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	29608	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:106:G:0:T:3:N:0:O:2	.	0,85,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	29669	A	C	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:1:G:0:T:0:N:0:O:0	.	1,10,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	29670	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.09523809523809523	.	A:0:C:19:G:0:T:2:N:0:O:0	.	1,12,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	29680	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,17,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00112	artic-pipeline	NB09	MN908947.3	29700	A	G	G	1	near depth threshold	Alarm	True	True	True	17	.	20	.	0.5882352941176471	.	A:0:C:0:G:10:T:0:N:0:O:7	.	4,11,6,6	222.823	117.8	.	depth near threshold	.	mismatch(n+m)	mixed position	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	300	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00112	artic-pipeline	NB09	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.1	.	A:0:C:18:G:0:T:2:N:0:O:0	.	0,5,2,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	156	A	T	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:22:C:0:G:0:T:1:N:0:O:1	.	0,6,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	198	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:22:T:0:N:0:O:0	.	1,6,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	291	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,3,0,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	102	.	20	.	0.9901960784313726	.	A:101:C:0:G:0:T:0:N:0:O:1	.	22,23,79,79	70.0	3103.6	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	522	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:4:G:0:T:123:N:0:O:0	.	0,57,4,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.025	.	A:154:C:0:G:4:T:0:N:0:O:2	.	4,32,0,128	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:95:G:0:T:3:N:0:O:0	.	0,43,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:87:G:0:T:3:N:0:O:1	.	0,41,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:2:C:0:G:65:T:0:N:0:O:1	.	2,13,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:63:G:0:T:3:N:0:O:4	.	0,54,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	1133	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	0,30,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:62:T:0:N:0:O:12	.	2,12,2,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:89:T:0:N:0:O:1	.	2,47,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:71:C:3:G:0:T:0:N:0:O:2	.	2,43,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:2:C:1:G:90:T:3:N:0:O:0	.	2,50,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:70:T:0:N:0:O:4	.	1,58,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:73:C:0:G:2:T:0:N:0:O:4	.	2,54,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:4:G:0:T:95:N:0:O:3	.	0,41,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	1861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:3:G:0:T:94:N:0:O:1	.	1,58,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2121	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:133:G:0:T:3:N:0:O:0	.	0,63,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:140:T:0:N:0:O:1	.	3,47,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:4:C:0:G:113:T:0:N:0:O:0	.	4,23,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	2199	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:0:G:143:T:0:N:0:O:1	.	2,54,1,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2303	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:78:C:0:G:0:T:2:N:0:O:12	.	0,63,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:78:C:0:G:0:T:2:N:0:O:12	.	0,64,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.046875	.	A:122:C:6:G:0:T:0:N:0:O:0	.	6,50,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:81:T:0:N:0:O:3	.	0,24,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:137:T:0:N:0:O:4	.	3,53,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:60:C:3:G:0:T:0:N:0:O:0	.	1,26,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:1:C:77:G:0:T:3:N:0:O:7	.	1,39,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	2,26,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:0:G:79:T:5:N:0:O:6	.	0,58,5,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	190	.	20	.	0.9526315789473684	.	A:0:C:2:G:1:T:181:N:0:O:6	.	78,85,103,105	267.196	663.7	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:2:T:83:N:0:O:3	.	2,19,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:68:G:0:T:4:N:0:O:3	.	0,41,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:91:T:0:N:0:O:1	.	4,38,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:85:G:0:T:4:N:0:O:0	.	0,65,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:76:N:0:O:21	.	1,45,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:77:T:0:N:0:O:2	.	1,44,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:71:G:0:T:2:N:0:O:0	.	0,62,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:1:C:72:G:0:T:2:N:0:O:1	.	0,63,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:100:N:0:O:1	.	1,63,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:125:C:0:G:3:T:0:N:0:O:0	.	3,51,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.031818181818181815	.	A:7:C:0:G:203:T:0:N:0:O:10	.	7,58,0,162	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:102:C:0:G:3:T:0:N:0:O:1	.	3,36,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4322	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:0:G:1:T:48:N:0:O:0	.	1,46,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.04040404040404041	.	A:0:C:0:G:176:T:8:N:0:O:14	.	0,136,8,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.02727272727272727	.	A:6:C:0:G:212:T:0:N:0:O:2	.	0,103,6,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:0:C:190:G:1:T:5:N:0:O:11	.	0,104,5,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4456	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:142:G:0:T:3:N:0:O:1	.	2,65,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:99:C:0:G:0:T:6:N:0:O:7	.	0,49,6,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4642	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:0:G:112:T:3:N:0:O:2	.	0,56,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	1,82,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:0:T:2:N:0:O:0	.	2,20,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:0:G:86:T:3:N:0:O:1	.	3,37,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:90:C:0:G:1:T:2:N:0:O:4	.	0,36,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:96:T:0:N:0:O:0	.	0,29,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	0,27,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.09090909090909091	.	A:0:C:60:G:0:T:6:N:0:O:0	.	0,51,6,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:5:G:0:T:76:N:0:O:0	.	0,42,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.9701492537313433	.	A:0:C:0:G:0:T:130:N:0:O:4	.	50,54,80,80	69.237	1142.9	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.10465116279069768	.	A:0:C:76:G:0:T:9:N:0:O:1	.	0,55,9,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	1,44,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:91:G:0:T:5:N:0:O:5	.	0,58,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,56,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:66:G:0:T:2:N:0:O:0	.	2,35,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.02631578947368421	.	A:179:C:0:G:5:T:0:N:0:O:6	.	5,65,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6849	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	1,30,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:73:C:0:G:0:T:6:N:0:O:2	.	0,54,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7047	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:0:T:3:N:0:O:1	.	0,56,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:76:C:0:G:3:T:1:N:0:O:0	.	3,52,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:5:C:0:G:79:T:0:N:0:O:2	.	5,27,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	7615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	1,71,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7669	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:191:C:0:G:4:T:0:N:0:O:1	.	4,102,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:96:N:0:O:4	.	0,50,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:3:G:0:T:0:N:0:O:0	.	3,46,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:96:C:0:G:3:T:0:N:0:O:0	.	3,25,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:121:C:0:G:0:T:3:N:0:O:0	.	3,52,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	8068	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	2,43,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	8106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,62,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:3:G:0:T:95:N:0:O:0	.	0,58,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:0:G:0:T:114:N:0:O:0	.	56,56,58,58	209.237	1142.0	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:5:C:0:G:68:T:0:N:0:O:5	.	5,8,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	8890	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:74:G:0:T:2:N:0:O:4	.	0,20,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:0:T:84:N:0:O:3	.	4,39,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:103:T:0:N:0:O:1	.	4,43,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:0:G:2:T:97:N:0:O:5	.	0,59,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	9751	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:73:T:0:N:0:O:1	.	1,30,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:5:C:0:G:67:T:0:N:0:O:1	.	5,15,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:2:C:78:G:0:T:3:N:0:O:4	.	3,19,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:86:N:0:O:1	.	0,56,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:0:G:74:T:0:N:0:O:0	.	3,19,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	10399	A	G	A	16	ignore low frequency variant	Pass	False	False	True	243	.	20	.	0.0205761316872428	.	A:233:C:0:G:5:T:0:N:0:O:5	.	5,106,0,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:94:G:0:T:2:N:0:O:4	.	0,72,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	10464	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:81:C:0:G:2:T:0:N:0:O:4	.	2,33,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	10790	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:135:G:0:T:3:N:0:O:1	.	2,64,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.08163265306122448	.	A:0:C:89:G:0:T:8:N:0:O:1	.	0,61,8,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:0:G:4:T:95:N:0:O:11	.	0,53,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:0:G:1:T:27:N:0:O:0	.	1,6,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,46,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	11425	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,63,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	11534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,46,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:95:G:0:T:5:N:0:O:4	.	0,80,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	11742	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:88:C:0:G:2:T:0:N:0:O:21	.	2,51,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:79:G:0:T:3:N:0:O:25	.	0,82,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:125:T:0:N:0:O:4	.	3,23,0,109	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:74:T:0:N:0:O:15	.	1,69,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:80:T:0:N:0:O:4	.	2,24,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	128	.	20	.	0.96875	.	A:124:C:0:G:0:T:0:N:0:O:4	.	70,74,54,54	210.0	1019.8	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:80:G:0:T:3:N:0:O:1	.	0,75,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:90:G:0:T:2:N:0:O:2	.	1,29,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:109:C:0:G:3:T:1:N:0:O:5	.	3,34,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:83:G:0:T:4:N:0:O:0	.	0,53,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13220	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:4:C:0:G:125:T:0:N:0:O:0	.	4,37,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:91:G:0:T:3:N:0:O:1	.	0,89,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.12790697674418605	.	A:11:C:0:G:72:T:0:N:0:O:3	.	11,41,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:94:G:0:T:0:N:0:O:7	.	2,59,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,51,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:98:T:0:N:0:O:3	.	2,23,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,31,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:48:C:0:G:2:T:0:N:0:O:5	.	0,5,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,33,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	3,47,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,73,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:87:C:0:G:0:T:3:N:0:O:1	.	3,42,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	14839	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	2,57,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:89:T:0:N:0:O:4	.	3,25,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	15101	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,68,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:3:G:0:T:69:N:0:O:1	.	0,66,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:92:G:0:T:4:N:0:O:0	.	0,66,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	0,51,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.12244897959183673	.	A:0:C:42:G:0:T:6:N:0:O:1	.	0,32,6,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	15985	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,52,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:78:T:0:N:0:O:6	.	2,17,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:0:G:112:T:3:N:0:O:2	.	2,47,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:92:T:0:N:0:O:1	.	4,10,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16742	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:102:N:0:O:0	.	0,50,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:109:N:0:O:3	.	0,55,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16823	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:43:T:1:N:0:O:1	.	0,19,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.07526881720430108	.	A:0:C:0:G:7:T:85:N:0:O:1	.	0,46,7,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.028735632183908046	.	A:5:C:0:G:121:T:0:N:0:O:48	.	0,68,5,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:4:C:0:G:180:T:0:N:0:O:5	.	4,30,0,159	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,52,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,77,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	17531	T	C	C	17	accept high frequency variant	Pass	False	True	True	104	.	20	.	0.9903846153846154	.	A:0:C:103:G:0:T:0:N:0:O:1	.	63,64,40,40	350.0	896.3	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,71,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:85:G:0:T:5:N:0:O:1	.	0,50,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.025252525252525252	.	A:0:C:193:G:0:T:5:N:0:O:0	.	2,124,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:77:G:0:T:3:N:0:O:2	.	0,58,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:89:C:0:G:0:T:3:N:0:O:7	.	0,56,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.06837606837606838	.	A:8:C:0:G:109:T:0:N:0:O:0	.	0,80,8,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:80:C:0:G:2:T:0:N:0:O:4	.	2,33,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:4:C:0:G:65:T:0:N:0:O:1	.	4,26,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.021834061135371178	.	A:0:C:221:G:0:T:5:N:0:O:3	.	0,140,5,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:88:N:0:O:1	.	0,73,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18245	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:119:C:0:G:0:T:3:N:0:O:28	.	3,87,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:1:C:137:G:1:T:5:N:0:O:0	.	0,95,5,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:1:G:2:T:91:N:0:O:0	.	1,33,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:0:G:137:T:0:N:0:O:6	.	3,65,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18470	A	G	A	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:150:C:0:G:4:T:0:N:0:O:3	.	4,77,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18735	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:93:C:5:G:0:T:0:N:0:O:6	.	0,58,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	0.944954128440367	.	A:0:C:103:G:0:T:6:N:0:O:0	.	47,47,56,62	206.227	1474.3	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	18738	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:0:G:4:T:112:N:0:O:0	.	0,54,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:0:G:3:T:108:N:0:O:0	.	3,41,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	18947	T	C	T	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.02066115702479339	.	A:0:C:5:G:0:T:226:N:0:O:11	.	1,119,4,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.15789473684210525	.	A:0:C:63:G:0:T:12:N:0:O:1	.	0,52,12,24	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	19675	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:122:G:0:T:0:N:0:O:5	.	0,74,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	19677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:106:T:0:N:0:O:2	.	0,55,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:88:N:0:O:2	.	0,63,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:79:G:0:T:2:N:0:O:0	.	0,32,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	20070	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	0,54,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:143:C:0:G:3:T:0:N:0:O:6	.	3,101,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.023952095808383235	.	A:4:C:0:G:153:T:0:N:0:O:10	.	4,91,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:112:T:0:N:0:O:0	.	4,30,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.0673076923076923	.	A:0:C:0:G:89:T:7:N:0:O:8	.	0,70,7,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:100:G:0:T:3:N:0:O:0	.	0,62,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:117:G:0:T:3:N:0:O:1	.	0,72,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:1:C:0:G:0:T:30:N:0:O:22	.	1,41,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:84:G:0:T:3:N:0:O:0	.	0,58,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:59:C:0:G:2:T:0:N:0:O:0	.	2,5,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:6:C:0:G:75:T:0:N:0:O:2	.	6,22,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21558	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	3,52,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:114:C:0:G:4:T:0:N:0:O:0	.	4,51,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21633	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:0:T:97:N:0:O:1	.	3,62,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21634	A	C	A	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.018518518518518517	.	A:113:C:3:G:0:T:1:N:0:O:45	.	3,71,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:81:G:0:T:4:N:0:O:3	.	2,17,2,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:70:G:0:T:2:N:0:O:11	.	0,64,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:3:G:0:T:74:N:0:O:0	.	0,58,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:104:G:0:T:4:N:0:O:2	.	0,46,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	22290	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:116:G:0:T:3:N:0:O:7	.	0,46,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:45:C:0:G:2:T:0:N:0:O:1	.	0,7,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:98:T:0:N:0:O:3	.	2,18,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	23280	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:90:T:0:N:0:O:7	.	2,22,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.1348314606741573	.	A:0:C:77:G:0:T:12:N:0:O:0	.	0,63,12,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:125:C:0:G:0:T:4:N:0:O:0	.	3,65,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:4:C:0:G:0:T:63:N:0:O:0	.	3,19,1,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	23997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:88:G:1:T:2:N:0:O:4	.	0,64,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	1.0	.	A:0:C:0:G:0:T:117:N:0:O:0	.	54,54,63,63	209.237	684.3	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:77:G:0:T:4:N:0:O:0	.	0,57,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:59:G:0:T:4:N:0:O:8	.	1,60,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,13,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:93:T:1:N:0:O:5	.	4,23,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:121:C:0:G:3:T:0:N:0:O:0	.	3,50,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:76:G:0:T:2:N:0:O:5	.	0,65,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:109:C:0:G:4:T:0:N:0:O:0	.	4,40,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24781	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	1,17,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:87:T:0:N:0:O:0	.	0,58,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:0:C:0:G:5:T:87:N:0:O:0	.	0,59,5,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,64,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	35	.	20	.	0.05714285714285714	.	A:0:C:2:G:0:T:33:N:0:O:0	.	2,27,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	25060	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:82:C:0:G:2:T:0:N:0:O:3	.	2,33,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	25135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,43,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25362	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:82:T:0:N:0:O:2	.	2,30,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:96:C:0:G:3:T:0:N:0:O:4	.	2,28,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25442	A	G	G	14	new position at high frequency	Pass	False	True	True	115	.	20	.	0.9652173913043478	.	A:1:C:1:G:111:T:0:N:0:O:2	.	47,51,64,64	280.0	2012.9	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:91:C:0:G:0:T:6:N:0:O:0	.	6,42,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:85:G:0:T:2:N:0:O:3	.	2,57,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:92:N:0:O:2	.	2,44,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:89:G:1:T:2:N:0:O:2	.	1,64,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:2:C:75:G:0:T:1:N:0:O:33	.	2,49,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.09259259259259259	.	A:48:C:5:G:0:T:0:N:0:O:1	.	1,34,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:88:C:0:G:2:T:0:N:0:O:2	.	2,49,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:61:C:0:G:2:T:0:N:0:O:3	.	2,28,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:77:T:1:N:0:O:0	.	3,38,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:128:G:0:T:0:N:0:O:4	.	3,71,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,40,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,20,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.04819277108433735	.	A:0:C:158:G:0:T:8:N:0:O:0	.	0,133,8,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.030927835051546393	.	A:0:C:6:G:0:T:188:N:0:O:0	.	0,139,6,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,57,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:89:C:0:G:0:T:6:N:0:O:1	.	6,24,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:80:T:0:N:0:O:0	.	4,11,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	108	.	20	.	0.9814814814814815	.	A:0:C:106:G:0:T:1:N:0:O:1	.	59,60,47,48	210.0	1149.2	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:83:G:0:T:4:N:0:O:0	.	0,64,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:80:G:0:T:3:N:0:O:1	.	0,56,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:97:T:0:N:0:O:0	.	2,30,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:85:C:0:G:2:T:0:N:0:O:13	.	2,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:93:C:0:G:5:T:0:N:0:O:0	.	5,28,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:76:T:0:N:0:O:0	.	4,15,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:0:C:74:G:0:T:6:N:0:O:0	.	0,64,6,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:107:N:0:O:1	.	0,66,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.03431372549019608	.	A:195:C:0:G:0:T:7:N:0:O:2	.	3,79,4,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27688	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:43:G:0:T:0:N:0:O:3	.	0,16,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:70:T:0:N:0:O:3	.	3,12,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,29,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	123	.	20	.	0.983739837398374	.	A:0:C:121:G:0:T:0:N:0:O:2	.	60,62,61,61	349.237	1991.2	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	28078	T	C	T	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:3:G:0:T:123:N:0:O:22	.	1,61,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	255	.	20	.	0.9921568627450981	.	A:0:C:253:G:0:T:1:N:0:O:1	.	122,124,131,131	247.085	1535.8	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:87:C:0:G:1:T:2:N:0:O:3	.	2,41,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:84:T:0:N:0:O:5	.	3,37,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:57:G:0:T:2:N:0:O:12	.	0,26,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:110:G:0:T:4:N:0:O:0	.	0,56,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:100:G:0:T:0:N:0:O:35	.	4,70,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28729	T	C	T	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.01932367149758454	.	A:0:C:4:G:0:T:196:N:0:O:7	.	0,82,4,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:3:G:0:T:68:N:0:O:4	.	0,38,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	103	.	20	.	0.9611650485436893	.	A:0:C:0:G:99:T:0:N:0:O:4	.	28,32,71,71	296.058	1471.6	.	.	.	.	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:49:G:0:T:2:N:0:O:3	.	0,24,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:74:G:0:T:3:N:0:O:0	.	0,29,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:122:G:0:T:3:N:0:O:5	.	0,103,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29199	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,42,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:117:G:0:T:0:N:0:O:3	.	3,53,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29364	C	A	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:82:G:0:T:0:N:0:O:1	.	0,42,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29365	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:125:C:3:G:0:T:0:N:0:O:0	.	0,59,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	1,4,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:84:T:0:N:0:O:9	.	4,22,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00113	artic-pipeline	NB10	MN908947.3	29440	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	3,42,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	109	.	20	.	0.8256880733944955	.	A:0:C:0:G:90:T:0:N:0:O:19	.	29,48,61,61	261.384	958.7	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00113	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:23:N:0:O:2	.	0,4,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.09090909090909091	.	A:0:C:20:G:0:T:2:N:0:O:0	.	0,1,2,21	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,1,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	132	A	C	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:1:G:0:T:0:N:0:O:0	.	0,3,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	155	G	T	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:37:T:1:N:0:O:1	.	0,3,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	209	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,1,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	210	G	C	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:28:T:0:N:0:O:0	.	0,1,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	211	T	A	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:0:T:23:N:0:O:0	.	0,1,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	212	T	G	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:0:G:1:T:28:N:0:O:1	.	0,2,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	0,1,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	35	.	20	.	1.0	.	A:0:C:0:G:0:T:35:N:0:O:0	.	1,1,34,34	70.0	1154.5	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	280	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,1,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	283	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:1:T:28:N:0:O:0	.	0,1,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:23:C:0:G:1:T:0:N:0:O:1	.	0,2,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	522	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:121:N:0:O:1	.	0,44,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:97:N:0:O:2	.	0,42,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	610	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:146:C:0:G:3:T:0:N:0:O:0	.	3,38,0,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	713	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:93:T:2:N:0:O:0	.	1,28,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,51,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:72:T:0:N:0:O:1	.	3,16,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	1030	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:3:T:94:N:0:O:4	.	2,69,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,43,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	0,32,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.022123893805309734	.	A:0:C:216:G:0:T:5:N:0:O:5	.	0,103,5,123	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	0,44,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:2:G:0:T:0:N:0:O:0	.	0,55,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:29:C:0:G:1:T:0:N:0:O:1	.	1,3,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:3:G:0:T:0:N:0:O:0	.	0,61,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0847457627118644	.	A:10:C:0:G:108:T:0:N:0:O:0	.	10,39,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	2493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:88:C:0:G:2:T:0:N:0:O:14	.	0,17,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0707070707070707	.	A:7:C:0:G:91:T:0:N:0:O:1	.	0,15,7,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:0:C:4:G:0:T:139:N:0:O:3	.	0,102,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:140:C:4:G:0:T:0:N:0:O:0	.	4,82,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:120:G:0:T:3:N:0:O:2	.	0,109,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:2:G:0:T:0:N:0:O:0	.	1,30,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2928	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2961	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:98:C:0:G:2:T:0:N:0:O:3	.	2,30,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	2968	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,55,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	128	.	20	.	0.6640625	.	A:0:C:0:G:0:T:85:N:0:O:43	.	42,85,43,43	58.823	1530.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:87:C:0:G:2:T:0:N:0:O:4	.	2,13,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:0:T:89:N:0:O:0	.	0,47,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:82:G:0:T:3:N:0:O:3	.	0,48,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:46:T:0:N:0:O:2	.	1,20,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:35:C:0:G:0:T:1:N:0:O:2	.	1,20,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:83:G:0:T:4:N:0:O:0	.	0,68,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:83:T:2:N:0:O:6	.	2,52,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:78:T:0:N:0:O:1	.	0,48,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3870	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:67:C:0:G:2:T:0:N:0:O:0	.	0,12,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:1:G:0:T:119:N:0:O:13	.	3,80,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,73,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4236	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,34,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	4238	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:101:N:0:O:0	.	3,30,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:100:C:4:G:0:T:0:N:0:O:0	.	4,21,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,37,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.026881720430107527	.	A:0:C:0:G:175:T:5:N:0:O:6	.	0,134,5,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.03125	.	A:0:C:0:G:134:T:5:N:0:O:21	.	0,142,5,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:4:C:0:G:193:T:0:N:0:O:1	.	0,100,4,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:94:C:0:G:1:T:8:N:0:O:2	.	1,60,7,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4589	A	C	C	14	new position at high frequency	Pass	False	True	True	125	.	20	.	0.992	.	A:0:C:124:G:0:T:0:N:0:O:1	.	78,79,46,46	346.227	2371.6	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4614	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:1:T:97:N:0:O:4	.	2,54,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:0:G:138:T:3:N:0:O:0	.	3,77,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:73:G:0:T:0:N:0:O:10	.	0,75,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,49,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5473	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:98:N:0:O:3	.	2,65,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:86:C:3:G:0:T:0:N:0:O:0	.	3,52,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:110:T:0:N:0:O:3	.	3,73,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.021367521367521368	.	A:0:C:228:G:0:T:5:N:0:O:1	.	0,149,5,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:0:C:68:G:0:T:5:N:0:O:0	.	0,64,5,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:71:N:0:O:1	.	0,41,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:86:T:0:N:0:O:2	.	3,17,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5821	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:2:G:1:T:0:N:0:O:0	.	2,36,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5824	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:84:N:0:O:3	.	2,43,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	5829	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	2,49,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:115:G:0:T:4:N:0:O:2	.	0,83,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.06060606060606061	.	A:0:C:93:G:0:T:6:N:0:O:0	.	0,78,6,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:0:C:2:G:0:T:96:N:0:O:15	.	2,68,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:91:G:0:T:5:N:0:O:0	.	4,62,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	6272	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,57,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:4:G:0:T:85:N:0:O:0	.	0,48,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:91:G:0:T:2:N:0:O:7	.	0,60,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:76:G:0:T:3:N:0:O:3	.	3,49,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,40,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.03365384615384615	.	A:190:C:0:G:7:T:1:N:0:O:10	.	7,93,0,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6859	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,53,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	3,42,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:93:C:0:G:0:T:5:N:0:O:2	.	0,68,5,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7223	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:1:C:0:G:89:T:2:N:0:O:3	.	2,49,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:86:T:0:N:0:O:0	.	4,33,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	7512	A	T	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:122:C:0:G:0:T:3:N:0:O:0	.	0,70,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:105:T:0:N:0:O:1	.	3,51,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7530	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,51,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:72:G:0:T:2:N:0:O:23	.	0,82,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:75:N:0:O:0	.	0,40,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:5:G:0:T:108:N:0:O:0	.	0,54,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8143	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:118:C:0:G:3:T:0:N:0:O:4	.	3,53,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	0,40,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8477	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:98:N:0:O:3	.	0,44,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:4:G:0:T:111:N:0:O:0	.	0,65,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8743	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	1,50,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8887	A	T	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:67:C:0:G:0:T:2:N:0:O:1	.	2,15,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:66:G:0:T:2:N:0:O:1	.	1,10,1,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:1:G:63:T:0:N:0:O:4	.	3,6,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,45,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.06060606060606061	.	A:0:C:0:G:124:T:8:N:0:O:0	.	0,45,8,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.014925373134328358	.	A:0:C:96:G:0:T:2:N:0:O:36	.	1,127,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:5:C:0:G:73:T:0:N:0:O:0	.	5,19,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.058823529411764705	.	A:0:C:87:G:0:T:6:N:0:O:9	.	6,31,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:85:G:0:T:3:N:0:O:4	.	0,63,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	1,59,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:5:C:0:G:0:T:108:N:0:O:0	.	0,68,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:0:C:51:G:0:T:2:N:0:O:6	.	0,43,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10320	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:0:T:87:N:0:O:2	.	2,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10321	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:90:N:0:O:6	.	2,48,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:106:G:0:T:3:N:0:O:1	.	0,67,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,45,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:92:G:0:T:4:N:0:O:0	.	0,53,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:0:G:4:T:94:N:0:O:3	.	0,45,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:96:G:0:T:0:N:0:O:6	.	2,42,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.08333333333333333	.	A:0:C:0:G:2:T:22:N:0:O:0	.	2,7,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11082	T	G	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.08333333333333333	.	A:0:C:0:G:2:T:21:N:0:O:1	.	1,7,1,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.01764705882352941	.	A:0:C:0:G:130:T:3:N:0:O:37	.	3,109,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:0:G:4:T:100:N:0:O:0	.	3,57,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:0:C:5:G:0:T:116:N:0:O:1	.	5,86,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:0:T:2:N:0:O:3	.	2,63,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11577	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:123:N:0:O:0	.	3,87,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:104:G:0:T:3:N:0:O:2	.	0,94,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11810	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:4:C:0:G:76:T:0:N:0:O:1	.	4,57,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11811	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:87:T:2:N:0:O:0	.	2,62,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11812	C	G	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:2:T:0:N:0:O:0	.	2,69,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11875	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,87,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11881	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:115:C:0:G:3:T:0:N:0:O:3	.	3,91,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	11959	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,52,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	11960	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:80:G:0:T:2:N:0:O:2	.	0,51,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	2,42,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:117:C:0:G:5:T:0:N:0:O:0	.	3,40,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12264	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:87:C:0:G:2:T:0:N:0:O:3	.	2,49,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:66:T:0:N:0:O:14	.	0,60,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12374	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:83:G:0:T:3:N:0:O:2	.	1,40,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:94:G:0:T:0:N:0:O:1	.	0,56,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12523	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:4:G:0:T:99:N:0:O:0	.	0,60,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12600	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:1:C:0:G:104:T:3:N:0:O:1	.	2,36,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:0:C:75:G:0:T:4:N:0:O:0	.	0,56,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	12749	G	T	G	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.02066115702479339	.	A:0:C:0:G:237:T:5:N:0:O:0	.	5,86,0,156	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13182	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:114:C:0:G:3:T:0:N:0:O:2	.	3,53,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13183	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:116:T:0:N:0:O:2	.	3,62,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13408	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:95:N:0:O:1	.	0,49,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	13409	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	1,46,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:1:C:71:G:0:T:2:N:0:O:0	.	0,66,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:89:T:0:N:0:O:7	.	2,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:102:C:0:G:5:T:0:N:0:O:0	.	5,46,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:117:T:0:N:0:O:5	.	3,39,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	13730	C	T	T	17	accept high frequency variant	Pass	False	True	True	167	.	20	.	1.0	.	A:0:C:0:G:0:T:167:N:0:O:0	.	86,86,81,81	69.237	1388.0	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:43:C:0:G:2:T:0:N:0:O:1	.	0,9,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:69:G:0:T:2:N:0:O:8	.	0,59,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:75:G:0:T:4:N:0:O:1	.	0,56,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	89	.	20	.	0.9662921348314607	.	A:0:C:0:G:0:T:86:N:0:O:3	.	37,40,49,49	321.424	1236.6	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:0:T:2:N:0:O:0	.	2,39,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:95:N:0:O:3	.	0,65,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:3:G:0:T:74:N:0:O:3	.	0,66,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:97:T:2:N:0:O:0	.	0,52,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	15717	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:0:G:3:T:116:N:0:O:8	.	0,71,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.1	.	A:0:C:44:G:0:T:5:N:0:O:1	.	1,30,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	16093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	2,51,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:98:G:0:T:3:N:0:O:2	.	0,66,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	16140	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,62,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,71,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,85,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:104:T:3:N:0:O:0	.	0,34,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:107:G:0:T:4:N:0:O:0	.	0,60,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	1,19,1,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,26,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:0:C:0:G:6:T:73:N:0:O:2	.	0,32,6,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:3:C:0:G:116:T:0:N:0:O:31	.	0,39,3,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:82:C:0:G:2:T:0:N:0:O:1	.	0,6,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:64:C:0:G:2:T:0:N:0:O:2	.	2,15,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:0:T:67:N:0:O:1	.	2,16,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:97:C:0:G:4:T:0:N:0:O:0	.	4,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.07142857142857142	.	A:7:C:0:G:91:T:0:N:0:O:0	.	7,29,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,47,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,46,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.09090909090909091	.	A:0:C:69:G:0:T:7:N:0:O:1	.	0,46,7,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.06306306306306306	.	A:98:C:0:G:0:T:7:N:0:O:6	.	0,44,7,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.07627118644067797	.	A:9:C:0:G:108:T:0:N:0:O:1	.	0,64,9,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:93:C:0:G:2:T:0:N:0:O:6	.	2,28,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:78:T:0:N:0:O:0	.	4,23,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:0:T:127:N:0:O:14	.	2,57,1,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.02197802197802198	.	A:4:C:0:G:178:T:0:N:0:O:0	.	4,38,0,144	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:115:G:0:T:4:N:0:O:0	.	0,73,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:123:G:0:T:3:N:0:O:0	.	0,78,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,40,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:115:T:0:N:0:O:3	.	3,16,0,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:0:N:0:O:1	.	2,23,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:113:G:0:T:3:N:0:O:0	.	0,64,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.08196721311475409	.	A:0:C:56:G:0:T:5:N:0:O:0	.	0,49,5,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.022988505747126436	.	A:4:C:0:G:0:T:135:N:0:O:35	.	2,99,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:97:N:0:O:2	.	0,76,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:0:G:3:T:69:N:0:O:4	.	0,29,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:0:G:5:T:88:N:0:O:1	.	5,43,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	20414	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:0:T:94:N:0:O:6	.	1,38,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,96,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.02824858757062147	.	A:169:C:0:G:5:T:0:N:0:O:3	.	5,67,0,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:0:C:0:G:85:T:7:N:0:O:9	.	0,66,7,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.013513513513513514	.	A:1:C:0:G:0:T:48:N:0:O:25	.	1,56,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:117:G:0:T:3:N:0:O:15	.	1,115,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:0:T:2:N:0:O:0	.	1,24,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:80:N:0:O:18	.	0,78,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:80:G:0:T:3:N:0:O:8	.	2,28,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:107:C:0:G:3:T:0:N:0:O:2	.	3,46,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:117:T:0:N:0:O:14	.	3,65,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.034482758620689655	.	A:0:C:0:G:5:T:140:N:0:O:0	.	5,47,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	22450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	1,20,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:30:C:0:G:1:T:0:N:0:O:1	.	0,5,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:0:G:2:T:70:N:0:O:1	.	2,20,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	22990	T	C	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:0:C:4:G:0:T:157:N:0:O:1	.	0,83,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.8208955223880597	.	A:1:C:1:G:110:T:0:N:0:O:22	.	35,59,75,75	279.237	1589.2	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:74:T:0:N:0:O:6	.	3,17,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,58,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	23644	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	1,61,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	23661	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:89:T:2:N:0:O:0	.	2,54,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	23712	A	T	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:128:C:0:G:0:T:3:N:0:O:10	.	0,76,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.1797752808988764	.	A:0:C:73:G:0:T:16:N:0:O:0	.	0,56,16,33	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:91:N:0:O:0	.	0,54,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:62:G:0:T:2:N:0:O:5	.	0,58,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	24420	A	G	A	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.027472527472527472	.	A:174:C:0:G:5:T:0:N:0:O:3	.	5,79,0,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:89:T:0:N:0:O:2	.	3,67,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:82:T:0:N:0:O:12	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	3,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	24936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:104:C:0:G:3:T:0:N:0:O:1	.	3,51,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:75:C:0:G:2:T:0:N:0:O:5	.	2,27,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:0:G:3:T:85:N:0:O:0	.	3,41,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25429	G	T	T	17	accept high frequency variant	Pass	False	True	True	126	.	20	.	0.9682539682539683	.	A:0:C:0:G:0:T:122:N:0:O:4	.	77,81,45,45	69.237	1539.0	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:91:N:0:O:3	.	1,76,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:91:C:0:G:0:T:6:N:0:O:0	.	6,49,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25602	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:82:C:0:G:2:T:0:N:0:O:1	.	2,44,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25672	C	A	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.01680672268907563	.	A:2:C:94:G:0:T:0:N:0:O:23	.	0,89,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,59,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.046511627906976744	.	A:6:C:77:G:0:T:0:N:0:O:46	.	5,47,1,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:50:C:2:G:0:T:0:N:0:O:1	.	1,35,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25850	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:0:N:0:O:1	.	2,43,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:1:T:95:N:0:O:1	.	2,45,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	3,45,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:70:C:0:G:3:T:0:N:0:O:0	.	3,21,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:3:T:0:N:0:O:0	.	3,42,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	2,30,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.041666666666666664	.	A:6:C:131:G:0:T:0:N:0:O:7	.	6,79,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:95:C:0:G:3:T:0:N:0:O:6	.	2,49,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,70,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:80:C:0:G:2:T:0:N:0:O:2	.	2,42,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:83:T:0:N:0:O:5	.	2,45,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.07792207792207792	.	A:6:C:0:G:70:T:0:N:0:O:1	.	6,31,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.028455284552845527	.	A:7:C:0:G:0:T:238:N:0:O:1	.	7,144,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.03	.	A:0:C:194:G:0:T:6:N:0:O:0	.	0,166,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:73:G:0:T:2:N:0:O:2	.	2,27,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	26608	T	A	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:0:T:49:N:0:O:1	.	1,20,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:96:C:1:G:0:T:3:N:0:O:1	.	3,29,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:79:T:0:N:0:O:1	.	4,12,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:89:G:0:T:4:N:0:O:0	.	0,74,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,57,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:0:T:2:N:0:O:1	.	1,53,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:96:C:0:G:3:T:0:N:0:O:1	.	3,32,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:86:T:0:N:0:O:0	.	5,26,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.0975609756097561	.	A:0:C:73:G:0:T:8:N:0:O:1	.	1,61,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.023696682464454975	.	A:206:C:0:G:0:T:5:N:0:O:0	.	2,81,3,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:92:C:0:G:3:T:0:N:0:O:1	.	3,41,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:77:T:0:N:0:O:2	.	2,20,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,31,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:0:G:2:T:53:N:0:O:0	.	2,54,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	2,59,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28151	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:77:N:0:O:1	.	2,58,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:79:T:0:N:0:O:4	.	2,34,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:92:G:0:T:0:N:0:O:10	.	3,67,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:86:C:0:G:0:T:3:N:0:O:8	.	3,34,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28409	C	A	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:73:G:0:T:0:N:0:O:1	.	2,22,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28681	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:72:T:0:N:0:O:0	.	0,16,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:0:C:57:G:0:T:4:N:0:O:6	.	0,35,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28927	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,35,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,20,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:110:G:0:T:3:N:0:O:3	.	0,97,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:3:G:0:T:78:N:0:O:1	.	0,42,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29132	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:0:G:82:T:2:N:0:O:0	.	0,33,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:107:N:0:O:1	.	0,54,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29264	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,53,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:123:G:0:T:1:N:0:O:2	.	3,45,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:42:C:0:G:2:T:0:N:0:O:0	.	0,2,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,16,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:2:C:0:G:90:T:0:N:0:O:14	.	2,29,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	261	.	20	.	0.022988505747126436	.	A:6:C:0:G:0:T:254:N:0:O:1	.	0,134,6,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:4:G:97:T:0:N:0:O:6	.	4,33,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00114	artic-pipeline	NB12	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	19328	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00114	artic-pipeline	NB12	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:0:T:1:N:0:O:0	.	0,8,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	83	T	A	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:0:T:30:N:0:O:0	.	0,6,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	84	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:0:T:1:N:0:O:1	.	0,8,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,6,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	110	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:0:T:1:N:0:O:1	.	0,4,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	115	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:42:N:0:O:2	.	0,8,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	122	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	0,4,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	123	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,5,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	147	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,9,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,9,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	168	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,8,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	177	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:25:N:0:O:0	.	0,7,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	183	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	0,7,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,8,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	31	.	20	.	0.967741935483871	.	A:0:C:0:G:0:T:30:N:0:O:1	.	4,5,26,26	70.0	1132.8	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	275	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:29:G:0:T:1:N:0:O:0	.	0,6,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	286	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:0:T:35:N:0:O:1	.	1,8,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	287	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:35:N:0:O:0	.	1,9,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	288	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:32:N:0:O:1	.	1,10,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:0:G:132:T:3:N:0:O:4	.	0,46,3,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:140:T:1:N:0:O:0	.	3,55,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.021551724137931036	.	A:5:C:0:G:226:T:0:N:0:O:1	.	5,70,0,162	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	687	A	G	A	16	ignore low frequency variant	Pass	False	False	True	249	.	20	.	0.020080321285140562	.	A:242:C:0:G:5:T:1:N:0:O:1	.	5,99,0,150	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	0,49,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	727	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,47,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.9924242424242424	.	A:0:C:1:G:0:T:131:N:0:O:0	.	77,77,54,55	70.0	1388.8	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:0:C:67:G:0:T:7:N:0:O:11	.	0,40,7,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:5:C:0:G:105:T:0:N:0:O:34	.	5,59,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:70:C:0:G:4:T:0:N:0:O:0	.	4,36,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:4:G:0:T:75:N:0:O:1	.	0,44,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:97:G:0:T:3:N:0:O:3	.	0,52,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	0,52,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:61:C:4:G:0:T:0:N:0:O:3	.	0,37,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:55:C:0:G:2:T:0:N:0:O:8	.	0,26,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1636	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:97:T:0:N:0:O:2	.	0,21,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	0,28,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2184	A	G	A	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.025210084033613446	.	A:227:C:0:G:6:T:0:N:0:O:5	.	6,136,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.06790123456790123	.	A:11:C:0:G:151:T:0:N:0:O:0	.	11,73,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	2258	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,44,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2303	A	T	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:72:C:0:G:0:T:2:N:0:O:5	.	0,61,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:68:C:0:G:0:T:2:N:0:O:5	.	0,57,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2356	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:77:C:0:G:2:T:0:N:0:O:2	.	2,28,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2488	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:97:G:0:T:2:N:0:O:2	.	0,56,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2514	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:2:T:0:N:0:O:1	.	2,42,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.04184100418410042	.	A:228:C:0:G:10:T:1:N:0:O:0	.	10,128,0,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	255	.	20	.	0.03137254901960784	.	A:236:C:0:G:8:T:0:N:0:O:11	.	8,147,0,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	84	.	20	.	0.7261904761904762	.	A:0:C:0:G:0:T:61:N:0:O:23	.	33,56,28,28	58.097	1070.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:0:G:69:T:2:N:0:O:8	.	0,50,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:2:C:132:G:0:T:4:N:0:O:4	.	1,77,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:0:C:78:G:0:T:4:N:0:O:0	.	0,46,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:75:C:0:G:0:T:4:N:0:O:1	.	3,31,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3518	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	0,19,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3540	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.13636363636363635	.	A:0:C:19:G:0:T:3:N:0:O:0	.	0,16,3,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3553	A	C	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:34:C:1:G:0:T:0:N:0:O:1	.	1,15,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3556	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:33:N:0:O:2	.	1,16,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3579	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.07692307692307693	.	A:2:C:0:G:0:T:24:N:0:O:0	.	2,13,0,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3597	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:0:T:1:N:0:O:0	.	0,13,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3611	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	1,21,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3646	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,15,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3658	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:28:N:0:O:5	.	0,19,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3670	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	1,13,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	1,10,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:3:T:94:N:0:O:25	.	0,50,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:95:T:0:N:0:O:1	.	0,49,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3901	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	2,52,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,65,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	4210	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	0,28,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:41:G:0:T:1:N:0:O:6	.	0,39,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:0:T:104:N:0:O:35	.	0,61,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:71:C:0:G:2:T:0:N:0:O:1	.	1,34,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	4316	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	2,27,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	306	.	20	.	0.0196078431372549	.	A:0:C:0:G:287:T:6:N:0:O:13	.	0,200,6,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	4841	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:80:T:0:N:0:O:9	.	2,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	4855	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	2,34,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5284	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:0:C:113:G:0:T:6:N:0:O:0	.	0,65,6,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:86:T:0:N:0:O:2	.	3,37,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5555	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:116:T:0:N:0:O:2	.	3,61,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	257	.	20	.	0.03501945525291829	.	A:0:C:233:G:0:T:9:N:0:O:15	.	0,115,9,142	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5590	T	C	T	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.029045643153526972	.	A:0:C:7:G:0:T:231:N:0:O:3	.	0,115,7,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:94:G:0:T:3:N:0:O:1	.	0,38,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.171875	.	A:0:C:53:G:0:T:11:N:0:O:0	.	0,40,11,24	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	0,11,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,12,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:24:T:0:N:0:O:1	.	1,11,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	5986	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:27:G:0:T:1:N:0:O:1	.	1,14,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.07692307692307693	.	A:0:C:24:G:0:T:2:N:0:O:0	.	0,12,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6110	A	T	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:0:T:1:N:0:O:0	.	0,7,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6128	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,9,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6146	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,11,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	290	.	20	.	0.020689655172413793	.	A:6:C:0:G:273:T:0:N:0:O:11	.	6,140,0,150	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.024509803921568627	.	A:0:C:197:G:0:T:5:N:0:O:2	.	0,141,5,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6554	G	T	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:38:T:1:N:0:O:0	.	1,21,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6555	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,21,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6565	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:26:C:0:G:2:T:0:N:0:O:1	.	1,12,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6566	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	1,12,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:35:G:0:T:1:N:0:O:2	.	0,27,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	6593	C	A	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:41:G:0:T:0:N:0:O:1	.	0,22,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6597	A	T	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:0:T:1:N:0:O:0	.	1,20,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6609	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:36:T:0:N:0:O:1	.	1,16,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6611	G	T	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:0:G:39:T:1:N:0:O:0	.	1,18,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,17,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	6671	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:40:T:0:N:0:O:0	.	0,24,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	1,19,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6675	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,22,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:23:N:0:O:0	.	0,15,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,25,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6702	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,25,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6708	A	C	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:1:G:0:T:0:N:0:O:0	.	1,16,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6719	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	1,16,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6729	A	T	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:0:T:1:N:0:O:0	.	0,21,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03759398496240601	.	A:123:C:0:G:5:T:0:N:0:O:5	.	5,54,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:117:T:3:N:0:O:2	.	2,60,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:87:N:0:O:0	.	2,37,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.07291666666666667	.	A:1:C:87:G:0:T:7:N:0:O:1	.	0,50,7,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:0:G:2:T:75:N:0:O:0	.	2,18,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:6:C:0:G:81:T:0:N:0:O:0	.	6,15,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:95:C:0:G:0:T:4:N:0:O:0	.	3,33,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	7732	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:105:G:0:T:3:N:0:O:0	.	2,40,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	8595	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,41,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:41:N:0:O:1	.	1,25,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	8608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,28,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	8619	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,55,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:128:G:0:T:3:N:0:O:2	.	0,92,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	8851	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,58,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:84:T:0:N:0:O:2	.	3,18,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:0:T:86:N:0:O:7	.	2,32,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	9093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:2:G:0:T:94:N:0:O:0	.	0,52,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	9104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:0:G:2:T:0:N:0:O:0	.	1,27,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:0:G:3:T:120:N:0:O:3	.	0,61,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:111:G:0:T:4:N:0:O:0	.	0,78,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:140:G:0:T:3:N:0:O:1	.	0,130,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:76:G:0:T:2:N:0:O:20	.	0,75,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:95:N:0:O:2	.	0,75,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:1:G:0:T:105:N:0:O:1	.	0,66,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:46:G:0:T:2:N:0:O:9	.	0,36,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:2:G:0:T:98:N:0:O:5	.	0,49,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:114:T:3:N:0:O:1	.	3,52,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	252	.	20	.	0.03571428571428571	.	A:0:C:9:G:0:T:241:N:0:O:2	.	0,139,9,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	0,60,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10861	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	1,20,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:4:G:0:T:99:N:0:O:0	.	0,56,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10997	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,34,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	10998	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,34,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11000	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:0:T:2:N:0:O:0	.	2,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11001	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	2,25,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	11051	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:4:C:122:G:0:T:0:N:0:O:6	.	4,62,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:94:N:0:O:0	.	2,39,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11448	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11490	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:92:G:0:T:3:N:0:O:2	.	0,65,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11576	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:1:G:2:T:0:N:0:O:0	.	2,59,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.014705882352941176	.	A:3:C:0:G:136:T:3:N:0:O:62	.	1,86,2,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:78:C:0:G:2:T:1:N:0:O:0	.	0,59,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:0:G:102:T:3:N:0:O:1	.	0,56,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:78:G:0:T:4:N:0:O:22	.	0,87,4,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.022857142857142857	.	A:170:C:0:G:4:T:0:N:0:O:1	.	3,65,1,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:66:T:0:N:0:O:16	.	0,66,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:96:G:0:T:2:N:0:O:4	.	2,27,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:106:C:0:G:4:T:0:N:0:O:1	.	4,38,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:98:T:0:N:0:O:4	.	4,36,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12437	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	1,41,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:87:G:0:T:2:N:0:O:8	.	0,43,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:4:G:0:T:84:N:0:O:0	.	0,39,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12638	C	G	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:2:T:0:N:0:O:1	.	0,43,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:74:C:0:G:2:T:0:N:0:O:3	.	2,34,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12672	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	2,31,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12673	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:0:T:96:N:0:O:1	.	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,34,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:76:G:0:T:4:N:0:O:1	.	0,57,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12848	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:96:C:1:G:2:T:0:N:0:O:5	.	2,44,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12853	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	2,30,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:115:C:0:G:3:T:0:N:0:O:4	.	3,30,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:0:C:83:G:0:T:6:N:0:O:0	.	0,45,6,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	13426	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,43,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:0:C:71:G:0:T:4:N:0:O:2	.	0,65,4,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:93:T:0:N:0:O:6	.	4,42,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:81:N:0:O:2	.	0,39,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	13763	G	C	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:91:T:0:N:0:O:1	.	0,44,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:87:C:0:G:3:T:0:N:0:O:1	.	0,41,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:90:T:0:N:0:O:3	.	4,29,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14275	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:2:T:0:N:0:O:1	.	1,25,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14289	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:0:G:4:T:116:N:0:O:0	.	0,68,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	77	.	20	.	1.0	.	A:0:C:0:G:0:T:77:N:0:O:0	.	26,26,51,51	333.422	1268.1	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:98:C:0:G:2:T:0:N:0:O:2	.	2,38,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14540	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:106:T:1:N:0:O:11	.	3,54,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:115:C:0:G:0:T:3:N:0:O:3	.	3,77,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:1:N:0:O:1	.	2,71,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14913	C	G	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:56:G:2:T:0:N:0:O:0	.	2,18,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:1:G:0:T:48:N:0:O:2	.	0,22,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:1:T:0:N:0:O:1	.	1,17,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	15067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:72:C:0:G:2:T:0:N:0:O:0	.	2,28,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	15144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	1,21,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,54,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	15758	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:2:G:1:T:0:N:0:O:0	.	2,64,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.1875	.	A:0:C:39:G:0:T:9:N:0:O:0	.	0,24,9,24	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	15955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	1,42,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.05405405405405406	.	A:0:C:0:G:101:T:6:N:0:O:4	.	6,54,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:99:G:0:T:5:N:0:O:2	.	0,68,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:85:T:1:N:0:O:1	.	3,18,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:83:G:0:T:2:N:0:O:5	.	0,64,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16812	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,15,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:3:G:0:T:95:N:0:O:0	.	0,28,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.125	.	A:0:C:0:G:14:T:90:N:0:O:8	.	0,29,14,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.044444444444444446	.	A:6:C:0:G:109:T:1:N:0:O:19	.	0,33,6,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	16848	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:109:G:0:T:3:N:0:O:0	.	0,24,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:70:C:3:G:0:T:0:N:0:O:0	.	3,11,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.01932367149758454	.	A:4:C:0:G:192:T:0:N:0:O:11	.	4,34,0,173	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:88:C:0:G:4:T:0:N:0:O:0	.	4,29,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:0:G:3:T:88:N:0:O:0	.	0,56,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:94:G:0:T:2:N:0:O:3	.	0,75,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.1	.	A:9:C:0:G:81:T:0:N:0:O:0	.	9,35,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,68,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17649	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:1:C:77:G:0:T:2:N:0:O:2	.	0,46,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:178:G:0:T:5:N:0:O:12	.	0,120,5,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.11290322580645161	.	A:0:C:55:G:0:T:7:N:0:O:0	.	0,41,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:81:C:0:G:0:T:6:N:0:O:11	.	0,43,6,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:6:C:0:G:82:T:0:N:0:O:0	.	0,62,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	17877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:73:N:0:O:3	.	0,56,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:77:T:0:N:0:O:1	.	3,22,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18161	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:0:T:2:N:0:O:1	.	2,60,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:0:C:139:G:0:T:4:N:0:O:0	.	0,82,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:141:G:0:T:3:N:0:O:1	.	0,96,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:87:N:0:O:0	.	1,25,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18378	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:128:C:0:G:3:T:0:N:0:O:1	.	2,49,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:83:C:0:G:4:T:0:N:0:O:0	.	4,34,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:0:G:99:T:0:N:0:O:1	.	4,38,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:79:T:0:N:0:O:2	.	2,26,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	2,46,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	18885	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:119:G:0:T:3:N:0:O:1	.	3,50,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.03409090909090909	.	A:0:C:165:G:0:T:6:N:0:O:5	.	0,87,6,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	19070	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.026143790849673203	.	A:0:C:149:G:0:T:4:N:0:O:0	.	0,75,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	19237	A	G	A	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:179:C:0:G:4:T:0:N:0:O:2	.	4,61,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:107:N:0:O:2	.	0,68,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	19901	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:139:G:0:T:3:N:0:O:1	.	2,61,1,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:83:C:0:G:2:T:0:N:0:O:6	.	2,33,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	0,50,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:86:G:0:T:0:N:0:O:0	.	0,50,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	20678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:74:G:0:T:2:N:0:O:5	.	0,57,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	21140	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.014598540145985401	.	A:0:C:2:G:0:T:133:N:0:O:2	.	0,43,2,94	17.143	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	2,25,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:4:C:0:G:136:T:0:N:0:O:5	.	4,68,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:82:G:0:T:3:N:0:O:2	.	3,27,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,62,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:3:G:0:T:72:N:0:O:2	.	0,63,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.01680672268907563	.	A:79:C:0:G:1:T:2:N:0:O:37	.	0,94,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	21964	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:77:C:0:G:0:T:2:N:0:O:13	.	0,74,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.0375	.	A:154:C:0:G:6:T:0:N:0:O:0	.	6,93,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.02976190476190476	.	A:162:C:0:G:0:T:5:N:0:O:1	.	4,127,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	22216	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.026490066225165563	.	A:4:C:0:G:146:T:0:N:0:O:1	.	4,114,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.07627118644067797	.	A:0:C:0:G:9:T:108:N:0:O:1	.	9,65,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:125:G:0:T:3:N:0:O:1	.	0,73,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:132:T:0:N:0:O:0	.	3,33,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:3:G:0:T:138:N:0:O:0	.	0,84,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:119:T:0:N:0:O:4	.	3,51,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23299	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:119:C:0:G:0:T:4:N:0:O:0	.	4,52,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23300	C	G	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:121:G:4:T:0:N:0:O:0	.	4,49,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:120:G:0:T:3:N:0:O:7	.	0,88,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	153	.	20	.	0.8888888888888888	.	A:0:C:0:G:136:T:0:N:0:O:17	.	77,94,59,59	280.0	1831.2	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,61,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:74:T:0:N:0:O:5	.	2,29,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:4:G:0:T:74:N:0:O:2	.	0,44,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23642	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	1,51,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:59:G:0:T:2:N:0:O:5	.	0,28,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:5:G:0:T:100:N:0:O:1	.	0,59,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:79:G:0:T:2:N:0:O:8	.	0,62,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.19444444444444445	.	A:0:C:87:G:0:T:21:N:0:O:0	.	1,73,20,35	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.04	.	A:0:C:5:G:1:T:119:N:0:O:0	.	0,84,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:3:C:0:G:0:T:59:N:0:O:0	.	3,30,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24005	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:121:C:0:G:4:T:0:N:0:O:5	.	3,47,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:76:G:0:T:3:N:0:O:1	.	0,67,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24242	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:0:T:48:N:0:O:0	.	0,38,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:0:C:52:G:0:T:2:N:0:O:5	.	0,53,2,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,13,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24422	C	A	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:4:C:144:G:0:T:3:N:0:O:18	.	3,80,1,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:70:G:0:T:5:N:0:O:6	.	0,68,5,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.04081632653061224	.	A:6:C:0:G:117:T:0:N:0:O:24	.	6,81,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,49,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24821	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:89:T:0:N:0:O:4	.	2,52,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	0,65,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:93:N:0:O:1	.	0,74,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	24953	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:96:T:0:N:0:O:0	.	3,53,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:91:T:0:N:0:O:7	.	3,54,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	1,60,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:0:G:4:T:98:N:0:O:1	.	4,21,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:78:N:0:O:2	.	0,42,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25490	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	1,42,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	104	.	20	.	1.0	.	A:0:C:0:G:0:T:104:N:0:O:0	.	31,31,73,73	280.0	1652.6	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,61,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	1,55,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:90:G:0:T:2:N:0:O:11	.	1,65,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:79:G:0:T:2:N:0:O:6	.	1,57,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25775	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.078125	.	A:58:C:5:G:0:T:0:N:0:O:1	.	1,38,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,72,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:80:C:0:G:2:T:0:N:0:O:1	.	2,27,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,47,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,35,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26082	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:117:G:0:T:3:N:0:O:0	.	0,74,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26513	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:137:C:0:G:0:T:3:N:0:O:0	.	0,70,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,41,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.05309734513274336	.	A:6:C:0:G:107:T:0:N:0:O:0	.	6,32,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:98:T:0:N:0:O:1	.	3,25,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.03048780487804878	.	A:0:C:159:G:0:T:5:N:0:O:0	.	0,122,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	0,35,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26593	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:92:N:0:O:1	.	0,48,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,47,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26600	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:69:G:0:T:2:N:0:O:0	.	2,30,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	0,30,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:93:N:0:O:0	.	1,42,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	26681	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:117:G:0:T:3:N:0:O:7	.	0,59,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.057971014492753624	.	A:4:C:0:G:65:T:0:N:0:O:0	.	4,9,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:104:T:0:N:0:O:0	.	4,22,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.07462686567164178	.	A:0:C:123:G:0:T:10:N:0:O:1	.	0,87,10,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:5:G:0:T:89:N:0:O:1	.	0,50,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.04316546762589928	.	A:0:C:117:G:0:T:6:N:0:O:16	.	0,69,6,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:193:C:1:G:0:T:4:N:0:O:2	.	1,68,3,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	1,35,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:74:G:0:T:2:N:0:O:2	.	1,39,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:0:T:82:N:0:O:3	.	1,57,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28370	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:118:C:0:G:3:T:0:N:0:O:3	.	2,60,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:76:G:0:T:2:N:0:O:3	.	0,48,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:89:C:0:G:2:T:0:N:0:O:2	.	2,26,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:2:C:82:G:1:T:0:N:0:O:26	.	2,41,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,23,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:82:G:0:T:2:N:0:O:8	.	0,32,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:46:G:0:T:1:N:0:O:2	.	0,20,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:74:N:0:O:1	.	0,26,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28896	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,27,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:86:N:0:O:1	.	0,28,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.07291666666666667	.	A:7:C:0:G:89:T:0:N:0:O:0	.	7,7,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:36:G:0:T:1:N:0:O:4	.	0,12,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:117:G:0:T:4:N:0:O:6	.	0,113,4,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29056	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:0:G:0:T:1:N:0:O:1	.	1,6,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29123	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,50,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,44,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:2:T:0:N:0:O:0	.	1,43,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:89:T:0:N:0:O:0	.	2,43,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:75:C:0:G:3:T:0:N:0:O:3	.	0,49,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:89:T:0:N:0:O:6	.	4,18,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00138	artic-pipeline	NB02	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	300	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00138	artic-pipeline	NB02	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	5	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	59	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:26:G:0:T:1:N:0:O:1	.	0,6,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	60	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,6,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	71	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	1,4,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	74	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:1:T:0:N:0:O:0	.	1,3,0,20	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:0:T:21:N:0:O:7	.	0,5,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	136	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:1:G:0:T:0:N:0:O:0	.	0,2,1,20	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	191	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:21:N:0:O:0	.	0,4,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	192	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:21:T:1:N:0:O:0	.	1,4,0,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	221	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,4,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	224	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,3,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	235	A	T	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:26:C:0:G:0:T:1:N:0:O:1	.	1,6,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	29	.	20	.	0.9655172413793104	.	A:0:C:0:G:0:T:28:N:0:O:1	.	5,6,23,23	69.237	1309.2	.	.	.	.	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	274	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,3,1,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	323	G	T	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:24:T:1:N:0:O:2	.	0,8,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	324	T	G	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:0:G:1:T:24:N:0:O:0	.	0,6,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,7,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	426	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:3:G:0:T:122:N:0:O:6	.	0,68,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	439	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:90:C:0:G:3:T:0:N:0:O:1	.	0,46,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	610	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:3:T:0:N:0:O:0	.	3,35,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	653	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:119:T:0:N:0:O:3	.	3,47,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.03139013452914798	.	A:0:C:216:G:0:T:7:N:0:O:0	.	0,111,7,112	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	843	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,34,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.0963855421686747	.	A:0:C:66:G:0:T:8:N:0:O:9	.	0,42,8,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	1166	C	G	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:83:G:2:T:0:N:0:O:7	.	0,62,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1203	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:3:T:0:N:0:O:0	.	3,41,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:0:C:5:G:0:T:79:N:0:O:1	.	0,44,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:97:N:0:O:1	.	0,26,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:0:C:92:G:0:T:5:N:0:O:1	.	0,47,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	1,39,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,12,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1793	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:119:C:0:G:0:T:3:N:0:O:1	.	2,57,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:83:C:0:G:2:T:0:N:0:O:1	.	2,25,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.06451612903225806	.	A:6:C:0:G:87:T:0:N:0:O:0	.	6,48,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:0:C:184:G:0:T:4:N:0:O:0	.	4,59,0,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2097	A	G	A	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.02336448598130841	.	A:205:C:0:G:5:T:0:N:0:O:4	.	5,63,0,151	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2098	G	A	G	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.022935779816513763	.	A:5:C:0:G:212:T:0:N:0:O:1	.	5,88,0,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.15135135135135136	.	A:28:C:0:G:157:T:0:N:0:O:0	.	28,51,0,134	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	2302	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.017241379310344827	.	A:0:C:1:G:0:T:49:N:0:O:8	.	1,39,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:0:T:34:N:0:O:0	.	1,26,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2446	T	G	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:1:T:45:N:0:O:2	.	0,17,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2447	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:47:T:0:N:0:O:0	.	1,20,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.06818181818181818	.	A:3:C:0:G:41:T:0:N:0:O:0	.	1,8,2,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2577	G	A	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:4:C:0:G:194:T:0:N:0:O:0	.	3,99,1,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2624	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:4:C:0:G:176:T:0:N:0:O:0	.	4,93,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.02617801047120419	.	A:186:C:0:G:5:T:0:N:0:O:0	.	5,87,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.03365384615384615	.	A:194:C:0:G:7:T:0:N:0:O:7	.	7,103,0,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.1	.	A:27:C:3:G:0:T:0:N:0:O:0	.	1,19,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:0:C:46:G:0:T:1:N:0:O:7	.	1,26,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2927	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:48:T:0:N:0:O:1	.	0,25,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2928	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,19,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	1,28,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2968	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,33,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2975	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:0:T:1:N:0:O:0	.	1,29,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2993	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:46:T:0:N:0:O:0	.	1,21,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2994	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,19,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	2999	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:46:T:0:N:0:O:0	.	1,28,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3015	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	0,17,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3018	C	G	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:48:G:1:T:0:N:0:O:2	.	0,27,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3019	A	C	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:1:G:0:T:0:N:0:O:0	.	0,27,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	55	.	20	.	0.7454545454545455	.	A:0:C:0:G:0:T:41:N:0:O:14	.	23,37,18,18	56.449	594.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	3045	C	A	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:48:G:0:T:0:N:0:O:0	.	1,23,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3072	G	T	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:0:G:49:T:1:N:0:O:1	.	0,32,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,18,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3088	T	G	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:0:G:1:T:49:N:0:O:1	.	0,27,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3134	G	C	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:48:T:0:N:0:O:1	.	1,29,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3136	T	G	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:1:T:45:N:0:O:0	.	1,32,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3139	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:51:C:0:G:2:T:0:N:0:O:0	.	2,28,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3143	T	C	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:1:G:0:T:48:N:0:O:4	.	0,29,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3145	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:39:T:0:N:0:O:5	.	1,32,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3158	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,33,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:4:G:0:T:122:N:0:O:0	.	0,81,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:91:G:0:T:4:N:0:O:2	.	0,66,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:56:C:0:G:0:T:4:N:0:O:2	.	3,34,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:146:C:0:G:4:T:0:N:0:O:0	.	4,66,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3524	T	G	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:1:T:21:N:0:O:0	.	1,13,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3542	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,11,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3611	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:22:G:0:T:1:N:0:O:1	.	0,13,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3754	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,8,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3759	G	T	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:0:G:22:T:1:N:0:O:0	.	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:97:T:1:N:0:O:2	.	0,58,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:97:G:0:T:4:N:0:O:1	.	0,75,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:109:T:0:N:0:O:3	.	3,48,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:46:G:0:T:1:N:0:O:4	.	0,34,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.022123893805309734	.	A:5:C:0:G:221:T:0:N:0:O:0	.	0,176,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.021367521367521368	.	A:5:C:0:G:222:T:2:N:0:O:5	.	1,130,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:0:C:136:G:0:T:3:N:0:O:13	.	0,79,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	4885	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:2:G:0:T:93:N:0:O:10	.	0,47,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	4922	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,44,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:98:N:0:O:3	.	0,55,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:4:C:0:G:0:T:131:N:0:O:11	.	1,74,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5086	A	T	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:123:C:0:G:0:T:3:N:0:O:1	.	1,71,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:91:T:2:N:0:O:2	.	2,37,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:86:T:0:N:0:O:0	.	4,50,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,55,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5443	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:1:G:0:T:91:N:0:O:2	.	1,54,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5448	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:127:N:0:O:0	.	0,74,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5605	G	A	G	16	ignore low frequency variant	Pass	False	False	True	306	.	20	.	0.0196078431372549	.	A:6:C:0:G:264:T:0:N:0:O:36	.	6,174,0,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:91:N:0:O:0	.	0,56,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.09333333333333334	.	A:0:C:68:G:0:T:7:N:0:O:0	.	0,57,7,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:3:G:0:T:68:N:0:O:6	.	0,45,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5821	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5824	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	2,42,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:114:T:1:N:0:O:11	.	0,57,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:146:G:0:T:3:N:0:O:1	.	0,98,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:4:C:0:G:134:T:0:N:0:O:2	.	0,61,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6530	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:45:T:0:N:0:O:0	.	1,17,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:36:G:0:T:1:N:0:O:1	.	0,18,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6567	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	0,16,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6570	A	C	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:1:G:0:T:0:N:0:O:0	.	0,19,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6584	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:48:C:0:G:1:T:0:N:0:O:2	.	1,22,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6585	T	A	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:0:T:47:N:0:O:0	.	1,20,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6596	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,24,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6610	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:0:T:1:N:0:O:0	.	0,10,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6611	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	0,15,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,22,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6614	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:0:T:48:N:0:O:0	.	1,21,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6630	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:40:N:0:O:1	.	0,16,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:33:G:0:T:1:N:0:O:3	.	1,13,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:0:C:0:G:2:T:42:N:0:O:3	.	1,20,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	1,14,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6705	A	C	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:37:C:1:G:0:T:0:N:0:O:1	.	0,16,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,26,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:38:G:0:T:1:N:0:O:2	.	0,21,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:4:C:0:G:83:T:0:N:0:O:0	.	4,36,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	6897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:93:N:0:O:8	.	0,55,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	7156	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	0,41,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	7332	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	0,37,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,39,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:34:G:0:T:1:N:0:O:2	.	0,29,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:58:C:0:G:3:T:0:N:0:O:0	.	3,22,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.02564102564102564	.	A:1:C:4:G:0:T:151:N:0:O:0	.	0,104,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	8348	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:59:C:0:G:3:T:0:N:0:O:1	.	2,30,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	8379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,19,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,19,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:59:C:0:G:0:T:3:N:0:O:0	.	3,26,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:132:G:0:T:3:N:0:O:0	.	0,88,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:71:T:0:N:0:O:2	.	2,7,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:0:T:98:N:0:O:12	.	3,61,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	9185	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:98:C:0:G:2:T:0:N:0:O:2	.	2,57,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	9954	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:72:G:0:T:2:N:0:O:3	.	0,39,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:2:C:0:G:48:T:0:N:0:O:0	.	2,15,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:68:G:0:T:2:N:0:O:9	.	2,26,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:3:G:0:T:87:N:0:O:2	.	0,72,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:84:T:0:N:0:O:0	.	3,22,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,34,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.0673076923076923	.	A:0:C:93:G:0:T:7:N:0:O:4	.	0,52,7,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	10475	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:117:G:0:T:3:N:0:O:4	.	0,54,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10659	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:3:G:0:T:131:N:0:O:1	.	0,61,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.026200873362445413	.	A:0:C:6:G:0:T:223:N:0:O:0	.	0,112,6,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:0:C:77:G:0:T:6:N:0:O:0	.	0,42,6,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:0:G:3:T:83:N:0:O:7	.	0,36,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	10995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:92:C:0:G:0:T:2:N:0:O:8	.	0,38,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11081	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:20:N:0:O:0	.	0,14,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:111:T:3:N:0:O:1	.	3,70,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11332	A	G	A	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.024390243902439025	.	A:159:C:0:G:4:T:0:N:0:O:1	.	4,82,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.12244897959183673	.	A:0:C:84:G:0:T:12:N:0:O:2	.	0,70,12,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11815	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:2:G:0:T:0:N:0:O:0	.	0,51,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11972	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:124:T:0:N:0:O:0	.	3,46,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.015306122448979591	.	A:1:C:0:G:126:T:3:N:0:O:66	.	1,58,2,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:61:C:0:G:4:T:0:N:0:O:0	.	1,43,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	12052	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,35,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:83:G:0:T:3:N:0:O:17	.	0,68,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:82:T:0:N:0:O:20	.	0,89,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:125:T:0:N:0:O:0	.	1,66,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:101:G:0:T:3:N:0:O:4	.	2,43,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:93:G:0:T:3:N:0:O:8	.	0,51,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:79:G:0:T:2:N:0:O:2	.	0,58,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:106:C:0:G:4:T:0:N:0:O:4	.	4,47,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12848	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:92:C:0:G:2:T:0:N:0:O:3	.	1,45,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,24,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:96:T:0:N:0:O:4	.	3,25,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.07368421052631578	.	A:0:C:88:G:0:T:7:N:0:O:0	.	0,46,7,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:67:G:0:T:2:N:0:O:4	.	0,49,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	2,39,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:0:T:102:N:0:O:7	.	3,65,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:92:C:0:G:3:T:1:N:0:O:19	.	3,45,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,42,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:0:C:46:G:0:T:2:N:0:O:0	.	0,44,2,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:5:C:0:G:102:T:0:N:0:O:14	.	5,49,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:0:G:4:T:90:N:0:O:3	.	0,37,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:106:T:0:N:0:O:6	.	4,27,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:0:C:124:G:0:T:5:N:0:O:1	.	0,69,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,29,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	13813	G	T	T	14	new position at high frequency	Pass	False	True	True	127	.	20	.	1.0	.	A:0:C:0:G:0:T:127:N:0:O:0	.	51,51,76,76	279.237	1544.2	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,35,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	14285	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,70,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	73	.	20	.	1.0	.	A:0:C:0:G:0:T:73:N:0:O:0	.	38,38,35,35	400.023	1301.2	.	.	.	.	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,36,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	14758	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:105:N:0:O:3	.	0,70,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,19,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	14934	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:1:T:1:N:0:O:0	.	0,22,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	14944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:2:C:0:G:53:T:0:N:0:O:0	.	2,29,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	15104	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.07692307692307693	.	A:3:C:1:G:35:T:0:N:0:O:0	.	3,34,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	15145	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:56:C:0:G:2:T:0:N:0:O:2	.	2,29,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	15588	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:112:G:0:T:3:N:0:O:1	.	0,79,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	15947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:0:G:133:T:0:N:0:O:2	.	4,59,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.19298245614035087	.	A:0:C:46:G:0:T:11:N:0:O:0	.	0,26,11,31	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:106:G:0:T:4:N:0:O:2	.	0,66,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	16424	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:3:G:0:T:77:N:0:O:4	.	0,47,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16536	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	2,59,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:112:G:0:T:3:N:0:O:1	.	0,77,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:86:T:0:N:0:O:2	.	5,24,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:95:C:0:G:2:T:0:N:0:O:6	.	2,40,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:69:G:0:T:3:N:0:O:10	.	0,65,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16822	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:41:T:0:N:0:O:2	.	1,20,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.06542056074766354	.	A:0:C:0:G:7:T:97:N:0:O:3	.	0,46,7,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02702702702702703	.	A:4:C:0:G:121:T:1:N:0:O:22	.	0,48,4,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:3:G:0:T:0:N:0:O:0	.	3,30,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.028985507246376812	.	A:6:C:0:G:190:T:0:N:0:O:11	.	6,55,0,152	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17126	T	C	T	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:0:C:4:G:0:T:179:N:0:O:6	.	0,110,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:78:C:0:G:4:T:0:N:0:O:0	.	4,16,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:5:C:0:G:0:T:76:N:0:O:0	.	5,18,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:100:C:0:G:6:T:0:N:0:O:0	.	6,48,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:90:G:0:T:3:N:0:O:1	.	0,50,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:5:C:0:G:99:T:0:N:0:O:0	.	5,31,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:76:G:0:T:3:N:0:O:0	.	0,46,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.06557377049180328	.	A:0:C:57:G:0:T:4:N:0:O:0	.	0,41,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:80:C:0:G:0:T:3:N:0:O:16	.	0,39,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	0,60,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17878	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:2:C:97:G:0:T:0:N:0:O:15	.	1,71,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:99:G:0:T:3:N:0:O:10	.	0,69,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:95:C:0:G:2:T:0:N:0:O:4	.	2,32,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,29,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	18099	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:90:N:0:O:3	.	0,59,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:134:G:0:T:4:N:0:O:0	.	0,97,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:0:G:3:T:77:N:0:O:0	.	3,30,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	18559	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	1,40,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	18731	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:0:T:98:N:0:O:2	.	2,27,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,33,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	19101	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:4:C:0:G:149:T:0:N:0:O:2	.	4,56,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:3:G:0:T:131:N:0:O:1	.	0,58,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	20394	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:0:T:116:N:0:O:1	.	3,48,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:85:N:0:O:0	.	2,26,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:92:T:0:N:0:O:1	.	3,34,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.06060606060606061	.	A:4:C:0:G:62:T:0:N:0:O:0	.	4,20,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:75:G:0:T:5:N:0:O:13	.	5,34,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	20909	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:3:T:116:N:0:O:1	.	3,50,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21409	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:63:G:0:T:2:N:0:O:0	.	2,57,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21421	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.015748031496062992	.	A:93:C:0:G:2:T:0:N:0:O:32	.	1,72,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:1:G:59:T:0:N:0:O:0	.	2,22,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:66:G:0:T:2:N:0:O:2	.	0,46,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21433	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:89:C:0:G:0:T:2:N:0:O:2	.	0,32,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:80:C:0:G:2:T:0:N:0:O:2	.	2,23,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:115:T:0:N:0:O:4	.	3,61,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21633	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:97:N:0:O:1	.	2,55,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21737	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,58,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:83:G:0:T:2:N:0:O:4	.	0,64,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:3:G:0:T:78:N:0:O:0	.	0,61,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21790	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:111:N:0:O:12	.	0,77,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,38,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	21984	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:0:G:4:T:84:N:0:O:6	.	3,43,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:3:T:98:N:0:O:1	.	3,32,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,61,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:1:C:113:G:0:T:3:N:0:O:0	.	0,73,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,27,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	137	.	20	.	0.9197080291970803	.	A:0:C:0:G:126:T:0:N:0:O:11	.	62,73,64,64	64.466	1547.2	.	.	.	.	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,64,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:58:C:0:G:2:T:0:N:0:O:0	.	2,38,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,62,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23744	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:94:G:0:T:0:N:0:O:0	.	0,56,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23784	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:86:C:0:G:3:T:0:N:0:O:0	.	3,46,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.12871287128712872	.	A:0:C:88:G:0:T:13:N:0:O:0	.	0,73,13,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.04487179487179487	.	A:149:C:0:G:0:T:7:N:0:O:0	.	6,75,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.08823529411764706	.	A:6:C:0:G:0:T:61:N:0:O:1	.	6,33,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24005	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:112:C:0:G:4:T:0:N:0:O:4	.	3,40,1,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:101:T:0:N:0:O:4	.	4,28,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:1:C:83:G:0:T:4:N:0:O:0	.	0,67,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:6:C:0:G:74:T:0:N:0:O:0	.	6,23,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:76:T:0:N:0:O:8	.	2,28,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:145:G:0:T:3:N:0:O:2	.	0,82,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:125:G:0:T:5:N:0:O:2	.	0,89,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:78:G:0:T:4:N:0:O:2	.	0,73,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:118:T:3:N:0:O:0	.	3,56,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:84:T:0:N:0:O:3	.	2,50,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25262	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:69:G:0:T:3:N:0:O:13	.	3,61,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.07079646017699115	.	A:0:C:0:G:8:T:105:N:0:O:0	.	8,33,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25515	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	1,57,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25560	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	2,22,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:0:C:3:G:64:T:0:N:0:O:1	.	3,26,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:87:G:0:T:3:N:0:O:7	.	3,71,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:77:C:2:G:0:T:0:N:0:O:3	.	0,56,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:3:T:0:N:0:O:1	.	3,59,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:84:T:0:N:0:O:1	.	3,42,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26143	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.024752475247524754	.	A:5:C:0:G:190:T:0:N:0:O:7	.	5,74,0,128	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26327	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:4:G:0:T:117:N:0:O:3	.	0,75,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:104:T:0:N:0:O:1	.	3,45,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.0967741935483871	.	A:9:C:0:G:84:T:0:N:0:O:0	.	9,33,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.06172839506172839	.	A:0:C:151:G:0:T:10:N:0:O:1	.	0,126,10,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,47,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:3:G:0:T:70:N:0:O:1	.	1,20,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:4:C:0:G:70:T:0:N:0:O:3	.	4,10,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,61,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:115:G:0:T:4:N:0:O:0	.	0,64,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:3:T:107:N:0:O:8	.	0,54,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:111:C:0:G:1:T:3:N:0:O:3	.	0,59,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:6:C:0:G:73:T:0:N:0:O:1	.	6,14,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.10227272727272728	.	A:0:C:79:G:0:T:9:N:0:O:0	.	0,63,9,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,54,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:1:N:0:O:0	.	2,25,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27540	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:118:C:0:G:3:T:0:N:0:O:2	.	2,67,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27708	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,49,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:2:T:0:N:0:O:1	.	2,39,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:119:T:0:N:0:O:5	.	3,69,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27829	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:0:T:49:N:0:O:0	.	1,21,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27851	T	G	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:0:G:2:T:49:N:0:O:1	.	0,22,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:0:C:47:G:0:T:3:N:0:O:2	.	0,36,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:62:G:0:T:2:N:0:O:0	.	0,34,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:46:T:0:N:0:O:0	.	0,25,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	27932	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	0,22,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28073	G	C	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:46:T:0:N:0:O:0	.	0,24,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28076	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:48:G:0:T:1:N:0:O:0	.	0,30,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28087	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:0:T:1:N:0:O:0	.	0,19,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:4:C:0:G:0:T:74:N:0:O:3	.	2,48,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28236	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:131:G:0:T:3:N:0:O:1	.	3,90,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:76:C:0:G:2:T:1:N:0:O:5	.	2,27,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28508	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:109:C:0:G:4:T:1:N:0:O:0	.	3,44,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:0:T:2:N:0:O:1	.	0,23,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:0:C:75:G:0:T:5:N:0:O:8	.	0,31,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.06779661016949153	.	A:0:C:55:G:0:T:4:N:0:O:0	.	1,24,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	0.9908256880733946	.	A:108:C:0:G:0:T:0:N:0:O:1	.	21,22,87,87	185.158	2324.9	.	.	.	.	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	100	.	20	.	0.99	.	A:99:C:0:G:0:T:0:N:0:O:1	.	18,19,81,81	185.158	2324.9	.	.	.	.	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	97	.	20	.	0.9896907216494846	.	A:0:C:96:G:0:T:0:N:0:O:1	.	13,14,83,83	185.158	2324.9	.	.	.	.	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	28889	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:1:T:78:N:0:O:1	.	2,25,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,27,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,26,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00139	artic-pipeline	NB03	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.017241379310344827	.	A:0:C:49:G:0:T:1:N:0:O:8	.	0,15,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:74:N:0:O:0	.	0,14,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.06363636363636363	.	A:0:C:98:G:0:T:7:N:0:O:5	.	0,85,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:89:T:0:N:0:O:3	.	2,37,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:91:G:0:T:3:N:0:O:2	.	0,45,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:94:C:0:G:4:T:0:N:0:O:1	.	4,12,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:107:T:0:N:0:O:4	.	3,17,0,97	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:119:C:4:G:1:T:0:N:0:O:2	.	0,58,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00139	artic-pipeline	NB03	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	0	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	157	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,1,1,21	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	16	.	20	.	1.0	.	A:0:C:0:G:0:T:16:N:0:O:0	.	3,3,13,13	276.227	1309.5	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	293	G	T	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:20:T:1:N:0:O:0	.	1,5,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	294	A	T	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:19:C:0:G:0:T:1:N:0:O:1	.	1,6,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,24,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:0:G:72:T:2:N:0:O:0	.	0,39,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	580	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:1:C:2:G:0:T:87:N:0:O:0	.	0,49,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	1.0	.	A:0:C:0:G:0:T:133:N:0:O:0	.	69,69,64,64	419.237	1249.1	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:0:C:72:G:0:T:6:N:0:O:11	.	0,35,6,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:3:C:0:G:108:T:0:N:0:O:39	.	2,54,1,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:98:G:0:T:3:N:0:O:2	.	0,54,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:96:N:0:O:4	.	0,45,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:75:C:0:G:4:T:0:N:0:O:0	.	0,20,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:4:C:0:G:121:T:0:N:0:O:13	.	1,50,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:2:T:0:N:0:O:0	.	1,11,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	236	.	20	.	0.0211864406779661	.	A:5:C:0:G:229:T:0:N:0:O:2	.	5,84,0,152	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.08465608465608465	.	A:16:C:0:G:172:T:0:N:0:O:1	.	16,58,0,131	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	2250	G	A	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:0:G:19:T:0:N:0:O:0	.	0,12,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.022935779816513763	.	A:213:C:5:G:0:T:0:N:0:O:0	.	5,113,0,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:1:G:0:T:0:N:0:O:0	.	0,16,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2910	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:40:G:0:T:0:N:0:O:6	.	1,22,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:35:N:0:O:1	.	1,21,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2927	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	0,21,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	2933	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:30:G:0:T:1:N:0:O:2	.	0,22,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	44	.	20	.	0.8636363636363636	.	A:0:C:0:G:0:T:38:N:0:O:6	.	24,30,14,14	130.786	582.8	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	3051	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:1:T:0:N:0:O:1	.	1,23,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3073	T	G	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:0:G:1:T:37:N:0:O:3	.	0,31,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3098	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	1,23,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3115	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:48:N:0:O:1	.	0,31,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:46:G:0:T:1:N:0:O:1	.	0,30,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	0,29,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:0:G:33:T:2:N:0:O:1	.	0,23,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	3157	C	A	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:43:G:0:T:0:N:0:O:0	.	0,33,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:111:G:0:T:4:N:0:O:5	.	1,64,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:88:G:0:T:2:N:0:O:3	.	0,51,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:76:C:0:G:2:T:0:N:0:O:1	.	1,17,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:84:N:0:O:17	.	0,44,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:0:G:86:T:0:N:0:O:1	.	0,42,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:0:C:87:G:0:T:5:N:0:O:0	.	0,62,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	4170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:88:G:0:T:2:N:0:O:6	.	0,42,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	0,28,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	4222	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,29,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:0:C:40:G:0:T:2:N:0:O:2	.	0,22,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:0:T:100:N:0:O:31	.	0,45,3,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:2:G:1:T:67:N:0:O:1	.	1,35,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	279	.	20	.	0.025089605734767026	.	A:0:C:0:G:231:T:7:N:0:O:41	.	0,203,7,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0228310502283105	.	A:5:C:0:G:213:T:0:N:0:O:1	.	0,159,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	243	.	20	.	0.024691358024691357	.	A:6:C:0:G:237:T:0:N:0:O:0	.	0,112,6,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.04519774011299435	.	A:0:C:168:G:0:T:8:N:0:O:1	.	0,67,8,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0374331550802139	.	A:164:C:0:G:0:T:7:N:0:O:16	.	0,119,7,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:65:C:0:G:0:T:2:N:0:O:0	.	0,35,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.08163265306122448	.	A:0:C:45:G:0:T:4:N:0:O:0	.	0,27,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4919	A	T	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:63:C:0:G:0:T:2:N:0:O:1	.	2,29,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4920	C	G	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:61:G:2:T:1:N:0:O:0	.	2,30,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:1:T:49:N:0:O:0	.	1,28,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	4941	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:1:G:0:T:42:N:0:O:0	.	0,31,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:0:T:2:N:0:O:1	.	2,35,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:85:G:0:T:3:N:0:O:1	.	3,34,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5141	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:98:C:0:G:0:T:2:N:0:O:6	.	2,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:98:T:3:N:0:O:4	.	2,47,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:107:C:0:G:3:T:0:N:0:O:3	.	2,77,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:93:T:0:N:0:O:0	.	4,62,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5393	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:0:T:71:N:0:O:1	.	2,49,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5501	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:59:C:0:G:2:T:0:N:0:O:0	.	2,30,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,42,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:88:C:0:G:0:T:2:N:0:O:6	.	0,70,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:102:N:0:O:4	.	3,40,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	1,53,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:82:G:0:T:3:N:0:O:1	.	0,43,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.2	.	A:0:C:62:G:1:T:16:N:0:O:1	.	0,56,16,24	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	5738	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:109:C:0:G:3:T:0:N:0:O:2	.	3,49,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.024390243902439025	.	A:157:C:0:G:4:T:0:N:0:O:3	.	4,107,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6267	C	T	T	14	new position at high frequency	Pass	False	True	True	211	.	20	.	0.995260663507109	.	A:0:C:1:G:0:T:210:N:0:O:0	.	114,114,96,97	490.0	2460.2	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6547	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,9,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6548	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:34:G:0:T:1:N:0:O:1	.	0,16,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	6615	T	A	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:0:T:30:N:0:O:0	.	0,9,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6630	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,5,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6679	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:1:T:0:N:0:O:0	.	1,6,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,11,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6717	G	T	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:0:G:22:T:1:N:0:O:0	.	1,10,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6719	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,9,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:22:G:0:T:1:N:0:O:2	.	0,15,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6727	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,12,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:98:T:0:N:0:O:2	.	2,42,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:93:C:0:G:2:T:0:N:0:O:5	.	2,50,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	2,28,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7350	C	T	C	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.019801980198019802	.	A:0:C:184:G:0:T:4:N:0:O:14	.	2,146,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:112:T:0:N:0:O:1	.	3,48,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7530	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:3:T:0:N:0:O:0	.	3,47,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:83:G:1:T:3:N:0:O:22	.	1,94,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:43:C:0:G:0:T:2:N:0:O:0	.	2,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7698	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	0,22,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7700	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,15,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:40:G:0:T:1:N:0:O:0	.	0,31,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7715	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,27,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7728	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:52:G:0:T:2:N:0:O:3	.	1,40,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	7776	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:1:T:0:N:0:O:1	.	0,22,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	0,29,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:1:G:0:T:0:N:0:O:0	.	1,26,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7808	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,27,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7809	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:49:T:0:N:0:O:1	.	1,31,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7815	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	0,35,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:45:C:0:G:2:T:0:N:0:O:0	.	2,22,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7882	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,32,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7958	A	T	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:49:C:0:G:0:T:1:N:0:O:2	.	0,29,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	7960	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:48:T:0:N:0:O:0	.	1,37,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8022	T	C	T	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.028735632183908046	.	A:0:C:5:G:0:T:169:N:0:O:0	.	0,106,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8345	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,14,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8428	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	0,17,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,17,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8587	T	A	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:0:T:25:N:0:O:6	.	0,22,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,16,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8595	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,13,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8619	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,13,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8628	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:128:C:0:G:3:T:0:N:0:O:0	.	3,80,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:0:C:127:G:0:T:4:N:0:O:3	.	0,97,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8814	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:116:G:0:T:3:N:0:O:1	.	0,83,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:4:C:0:G:70:T:0:N:0:O:0	.	4,15,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:0:T:87:N:0:O:6	.	2,34,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:98:N:0:O:2	.	0,51,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:95:G:0:T:3:N:0:O:4	.	0,56,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	9335	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:99:T:0:N:0:O:1	.	0,56,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:0:T:91:N:0:O:4	.	0,51,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:66:G:0:T:2:N:0:O:1	.	1,15,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9498	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:122:N:0:O:0	.	0,61,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.03428571428571429	.	A:0:C:167:G:0:T:6:N:0:O:2	.	0,131,6,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9738	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:1:C:0:G:121:T:3:N:0:O:0	.	3,83,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9865	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:2:C:0:G:61:T:0:N:0:O:0	.	2,16,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:1:C:78:G:0:T:2:N:0:O:10	.	2,27,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	9973	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	1,37,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:90:N:0:O:7	.	0,70,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:123:G:0:T:3:N:0:O:4	.	0,69,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:88:N:0:O:7	.	0,47,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:101:G:0:T:4:N:0:O:3	.	0,81,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:113:C:0:G:3:T:0:N:0:O:1	.	3,52,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:105:T:3:N:0:O:0	.	3,63,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.029288702928870293	.	A:0:C:7:G:0:T:232:N:0:O:0	.	0,145,7,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:79:G:0:T:2:N:0:O:0	.	0,55,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,53,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:96:N:0:O:4	.	0,56,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	11051	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:128:G:0:T:0:N:0:O:6	.	3,76,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	11083	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	57	.	20	.	0.49122807017543857	.	A:0:C:0:G:1:T:28:N:0:O:28	.	3,32,25,25	32.375	704.9	.	.	.	.	mixed position	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	11161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,56,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.01764705882352941	.	A:0:C:0:G:132:T:3:N:0:O:35	.	3,102,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:3:T:94:N:0:O:1	.	3,45,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	11186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,59,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.06060606060606061	.	A:0:C:93:G:0:T:6:N:0:O:0	.	0,82,6,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	11916	C	T	T	17	accept high frequency variant	Pass	False	True	True	269	.	20	.	0.9925650557620818	.	A:0:C:1:G:0:T:267:N:0:O:1	.	162,164,105,105	280.0	1887.8	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.016304347826086956	.	A:0:C:0:G:127:T:3:N:0:O:54	.	0,75,3,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:75:C:0:G:3:T:0:N:0:O:0	.	0,51,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:107:C:0:G:4:T:0:N:0:O:4	.	4,46,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.05504587155963303	.	A:6:C:0:G:100:T:0:N:0:O:3	.	6,40,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:5:C:0:G:199:T:0:N:0:O:2	.	5,80,0,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:5:C:80:G:0:T:0:N:0:O:2	.	0,52,5,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:0:G:0:T:2:N:0:O:1	.	1,47,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:81:C:0:G:2:T:0:N:0:O:2	.	2,51,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:86:G:0:T:2:N:0:O:3	.	0,71,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.033816425120772944	.	A:7:C:0:G:199:T:0:N:0:O:1	.	7,68,0,139	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:0:G:121:T:0:N:0:O:9	.	3,40,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:109:C:0:G:3:T:0:N:0:O:3	.	3,25,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:105:G:0:T:4:N:0:O:0	.	0,55,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,34,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:76:T:0:N:0:O:3	.	2,45,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:5:C:0:G:87:T:0:N:0:O:11	.	5,41,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,26,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:0:T:105:N:0:O:21	.	2,64,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:107:G:0:T:0:N:0:O:14	.	3,61,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:109:T:0:N:0:O:1	.	3,31,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:0:C:105:G:0:T:6:N:0:O:1	.	0,61,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	3,36,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	78	.	20	.	0.9615384615384616	.	A:0:C:0:G:0:T:75:N:0:O:3	.	29,32,46,46	342.453	1114.2	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:107:G:0:T:3:N:0:O:2	.	0,64,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:97:T:0:N:0:O:0	.	3,25,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:91:C:0:G:3:T:1:N:0:O:1	.	3,57,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:131:G:0:T:3:N:0:O:13	.	0,76,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14901	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,21,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14912	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:35:C:0:G:1:T:0:N:0:O:3	.	1,16,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	1,25,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:1:T:0:N:0:O:0	.	1,15,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	1,18,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	0,26,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14972	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	1,21,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14973	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	1,20,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14975	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	0,25,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	14999	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:45:T:0:N:0:O:3	.	0,26,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15000	T	A	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:0:T:44:N:0:O:0	.	0,23,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15039	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:36:N:0:O:4	.	1,16,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15046	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:1:G:0:T:0:N:0:O:0	.	1,21,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15050	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,16,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15062	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:46:C:1:G:0:T:0:N:0:O:1	.	1,22,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15069	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:35:N:0:O:1	.	0,17,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15075	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	1,16,0,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15076	T	A	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:0:T:31:N:0:O:0	.	1,21,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	1,15,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15108	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,22,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15113	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,20,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15158	A	C	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:39:C:1:G:0:T:0:N:0:O:1	.	1,22,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15163	T	A	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:0:T:42:N:0:O:0	.	1,18,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15165	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:0:T:1:N:0:O:0	.	1,20,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15166	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:37:N:0:O:2	.	0,20,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	15167	T	G	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:1:T:39:N:0:O:4	.	0,21,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15560	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:69:N:0:O:1	.	0,46,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:0:G:89:T:3:N:0:O:0	.	0,60,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:115:N:0:O:0	.	0,73,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:2:C:0:G:0:T:39:N:0:O:23	.	0,41,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	15952	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	51	.	20	.	0.2549019607843137	.	A:0:C:36:G:0:T:13:N:0:O:2	.	0,25,13,26	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	16215	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	0,18,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16216	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:0:T:1:N:0:O:0	.	0,18,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16217	C	G	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:1:T:0:N:0:O:0	.	0,13,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:34:C:1:G:0:T:1:N:0:O:0	.	1,10,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:1:T:0:N:0:O:0	.	1,11,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:76:N:0:O:7	.	1,33,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,25,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:0:G:108:T:4:N:0:O:3	.	3,43,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	0,65,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:6:C:0:G:89:T:0:N:0:O:6	.	6,25,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:83:G:1:T:3:N:0:O:3	.	0,56,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.09482758620689655	.	A:0:C:0:G:11:T:99:N:0:O:6	.	0,43,11,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	0,28,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,22,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	1,32,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:0:C:79:G:0:T:4:N:0:O:0	.	0,52,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:98:T:0:N:0:O:1	.	3,30,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,50,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17649	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,33,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:94:C:0:G:0:T:3:N:0:O:7	.	0,59,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17667	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,39,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.03783783783783784	.	A:0:C:162:G:0:T:7:N:0:O:16	.	0,93,7,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:65:G:1:T:4:N:0:O:1	.	0,37,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.05555555555555555	.	A:86:C:0:G:1:T:6:N:0:O:15	.	0,38,6,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:85:T:0:N:0:O:0	.	0,53,5,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:130:G:0:T:3:N:0:O:0	.	0,88,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:0:G:3:T:73:N:0:O:1	.	1,26,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	18413	T	C	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:3:G:0:T:141:N:0:O:0	.	0,86,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	18879	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,34,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	18880	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,25,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	2,36,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	18998	C	T	T	17	accept high frequency variant	Pass	False	True	True	150	.	20	.	0.9866666666666667	.	A:0:C:0:G:0:T:148:N:0:O:2	.	73,75,75,75	700.0	1258.8	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:134:G:0:T:4:N:0:O:0	.	0,77,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	19060	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:123:T:0:N:0:O:2	.	0,67,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	19587	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:4:G:0:T:118:N:0:O:1	.	4,38,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	19588	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:3:G:0:T:136:N:0:O:0	.	3,49,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.0196078431372549	.	A:4:C:0:G:0:T:155:N:0:O:45	.	0,77,4,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:115:C:1:G:0:T:4:N:0:O:1	.	0,61,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	19899	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:144:C:0:G:0:T:3:N:0:O:0	.	1,61,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	19900	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:127:T:3:N:0:O:4	.	2,51,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20207	A	C	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.014084507042253521	.	A:132:C:2:G:0:T:1:N:0:O:7	.	2,64,0,78	29.425	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.016	.	A:2:C:0:G:112:T:1:N:0:O:10	.	2,36,0,89	29.425	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:103:T:0:N:0:O:1	.	4,27,0,81	20.357	.	.	.	.	mismatch(m+s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:85:C:0:G:2:T:0:N:0:O:5	.	2,34,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	20409	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:2:T:98:N:0:O:3	.	0,53,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20645	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:53:C:0:G:2:T:0:N:0:O:1	.	2,21,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	20659	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,15,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:44:N:0:O:1	.	1,18,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20668	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:2:C:0:G:48:T:0:N:0:O:0	.	1,27,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:55:T:0:N:0:O:2	.	2,23,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,29,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	20940	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:98:T:4:N:0:O:3	.	3,34,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21123	G	T	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0	.	A:0:C:0:G:141:T:0:N:0:O:12	.	0,66,0,87	20.712	.	.	.	.	mismatch(m)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	21139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.009259259259259259	.	A:0:C:107:G:0:T:1:N:0:O:0	.	0,42,1,66	15.962	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21391	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.0	.	A:0:C:1:G:0:T:109:N:0:O:0	.	0,60,0,50	2.295	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21393	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0	.	A:0:C:0:G:0:T:115:N:0:O:3	.	0,62,0,56	39.351	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21394	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.0	.	A:0:C:0:G:115:T:0:N:0:O:1	.	0,63,0,53	39.351	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21396	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.009708737864077669	.	A:0:C:101:G:0:T:1:N:0:O:1	.	0,55,1,48	17.948	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21409	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:58:G:0:T:2:N:0:O:2	.	2,48,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21421	A	C	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.0	.	A:79:C:0:G:2:T:1:N:0:O:32	.	0,73,0,41	2.401	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21421	A	C	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.0	.	A:79:C:0:G:2:T:1:N:0:O:32	.	0,73,0,41	2.401	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:54:T:0:N:0:O:3	.	2,30,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.0	.	A:0:C:0:G:55:T:1:N:0:O:1	.	0,25,0,32	22.453	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.05	.	A:0:C:56:G:0:T:3:N:0:O:1	.	0,44,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:67:C:0:G:3:T:0:N:0:O:0	.	3,24,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:5:C:0:G:92:T:0:N:0:O:3	.	5,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:2:C:0:G:0:T:91:N:0:O:19	.	0,76,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:0:C:57:G:0:T:3:N:0:O:1	.	3,14,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:47:G:0:T:1:N:0:O:1	.	0,36,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.06	.	A:0:C:3:G:0:T:47:N:0:O:0	.	0,38,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21874	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:47:T:0:N:0:O:2	.	0,36,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.015384615384615385	.	A:42:C:0:G:0:T:1:N:0:O:22	.	0,49,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	21898	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:67:T:0:N:0:O:4	.	1,23,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:146:C:0:G:3:T:0:N:0:O:2	.	3,79,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:144:C:0:G:0:T:3:N:0:O:0	.	3,86,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	22212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	2,71,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:0:G:4:T:104:N:0:O:0	.	4,40,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:90:N:0:O:1	.	0,55,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:93:G:0:T:2:N:0:O:5	.	1,39,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23321	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:145:C:0:G:3:T:0:N:0:O:3	.	3,85,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	147	.	20	.	0.8707482993197279	.	A:0:C:0:G:128:T:1:N:0:O:18	.	71,90,57,57	348.474	1936.5	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,14,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23535	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:1:T:0:N:0:O:1	.	1,14,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23537	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	0,16,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:25:T:0:N:0:O:3	.	1,4,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23565	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,2,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23569	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	1,16,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:26:N:0:O:1	.	0,13,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23603	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,17,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23625	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:30:G:0:T:1:N:0:O:1	.	0,16,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23627	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:32:C:0:G:1:T:0:N:0:O:1	.	1,11,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23635	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:43:G:0:T:1:N:0:O:1	.	0,18,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	23671	T	A	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:0:T:31:N:0:O:0	.	0,8,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23705	C	A	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:43:G:0:T:0:N:0:O:0	.	0,11,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23709	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:29:G:0:T:1:N:0:O:0	.	0,10,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	23718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:44:G:0:T:1:N:0:O:0	.	0,14,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23757	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:43:G:0:T:1:N:0:O:2	.	0,11,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23776	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:36:N:0:O:0	.	0,12,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23784	A	C	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:1:G:0:T:0:N:0:O:0	.	0,15,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23790	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:45:T:0:N:0:O:0	.	0,11,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.22727272727272727	.	A:0:C:67:G:0:T:20:N:0:O:1	.	0,56,20,32	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:106:G:0:T:4:N:0:O:9	.	0,45,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:3:C:0:G:0:T:55:N:0:O:0	.	3,19,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:79:G:0:T:5:N:0:O:0	.	0,50,5,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24202	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,52,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:98:G:0:T:1:N:0:O:1	.	4,64,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:97:G:0:T:4:N:0:O:0	.	0,74,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	2,64,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24721	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:2:G:0:T:98:N:0:O:5	.	2,86,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	0,58,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:1:C:0:G:3:T:81:N:0:O:3	.	0,65,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	3,64,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,66,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:0:G:3:T:90:N:0:O:0	.	3,27,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25518	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:85:N:0:O:0	.	0,54,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	116	.	20	.	0.9913793103448276	.	A:0:C:0:G:0:T:115:N:0:O:1	.	46,47,69,69	69.237	1786.6	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:4:C:103:G:0:T:0:N:0:O:10	.	4,61,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:0:C:5:G:0:T:100:N:0:O:0	.	0,64,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:92:G:0:T:2:N:0:O:9	.	2,59,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,55,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:78:C:5:G:0:T:0:N:0:O:6	.	1,60,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:99:G:0:T:4:N:0:O:0	.	0,68,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	1,56,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:92:C:0:G:3:T:0:N:0:O:2	.	3,41,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:103:G:0:T:3:N:0:O:3	.	0,59,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	26143	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:113:T:0:N:0:O:1	.	3,51,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	1,65,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:0:C:130:G:0:T:4:N:0:O:8	.	3,89,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,45,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26513	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:144:C:0:G:0:T:3:N:0:O:0	.	3,93,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26515	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:0:T:125:N:0:O:0	.	3,86,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:2:T:0:N:0:O:1	.	2,35,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:6:C:0:G:90:T:0:N:0:O:1	.	6,39,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:4:C:0:G:77:T:0:N:0:O:0	.	4,27,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.05649717514124294	.	A:0:C:167:G:0:T:10:N:0:O:0	.	0,141,10,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.02912621359223301	.	A:0:C:6:G:0:T:200:N:0:O:0	.	0,153,6,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26589	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:103:T:3:N:0:O:1	.	3,58,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:88:G:0:T:2:N:0:O:4	.	1,34,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:78:T:0:N:0:O:0	.	4,13,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:89:G:0:T:3:N:0:O:0	.	0,59,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:115:C:0:G:4:T:1:N:0:O:5	.	4,66,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:4:C:0:G:109:T:0:N:0:O:0	.	4,28,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.13008130081300814	.	A:0:C:106:G:0:T:16:N:0:O:1	.	0,92,16,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,54,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:4:G:0:T:92:N:0:O:2	.	1,57,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:117:G:0:T:3:N:0:O:16	.	0,66,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.026041666666666668	.	A:187:C:0:G:0:T:5:N:0:O:0	.	3,79,2,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:89:G:0:T:0:N:0:O:0	.	2,53,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27833	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	1,19,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27841	G	T	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:0:G:29:T:1:N:0:O:1	.	0,16,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27842	G	T	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:28:T:1:N:0:O:3	.	1,18,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27843	T	A	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:0:T:29:N:0:O:2	.	1,17,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27851	T	G	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:1:T:25:N:0:O:0	.	0,10,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27857	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	0,16,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27858	C	A	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:36:G:0:T:0:N:0:O:1	.	0,18,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27872	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,12,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27873	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:29:C:0:G:1:T:0:N:0:O:1	.	1,11,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	1,7,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:28:C:0:G:1:T:0:N:0:O:1	.	1,6,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27953	T	A	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:0:T:26:N:0:O:0	.	0,11,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27961	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:27:C:0:G:1:T:0:N:0:O:1	.	1,13,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27979	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:1:G:0:T:0:N:0:O:0	.	1,20,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	27989	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	0,14,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.07142857142857142	.	A:2:C:0:G:26:T:0:N:0:O:0	.	2,12,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28068	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:42:T:0:N:0:O:3	.	1,23,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28073	G	T	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:0:G:33:T:1:N:0:O:0	.	0,16,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28089	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	1,14,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	1,21,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	28094	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:34:N:0:O:1	.	1,18,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:93:C:0:G:0:T:2:N:0:O:3	.	2,44,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:91:C:0:G:2:T:1:N:0:O:4	.	2,27,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28414	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	1,73,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	3,32,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	0,57,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:82:G:0:T:3:N:0:O:3	.	1,44,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,31,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:83:G:0:T:3:N:0:O:10	.	0,45,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28863	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:63:G:0:T:0:N:0:O:29	.	0,67,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:89:T:0:N:0:O:0	.	3,12,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:79:G:0:T:5:N:0:O:0	.	0,38,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:45:G:0:T:1:N:0:O:5	.	0,25,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:0:C:5:G:0:T:64:N:0:O:1	.	0,23,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:78:G:0:T:3:N:0:O:0	.	0,30,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:113:G:0:T:5:N:0:O:2	.	0,100,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:72:T:0:N:0:O:1	.	2,41,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29095	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:92:G:0:T:2:N:0:O:9	.	0,69,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	29218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:109:G:0:T:3:N:0:O:30	.	0,53,3,89	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:1:C:4:G:90:T:0:N:0:O:0	.	1,40,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.08695652173913043	.	A:82:C:0:G:8:T:0:N:0:O:2	.	7,18,1,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.058823529411764705	.	A:6:C:0:G:92:T:0:N:0:O:4	.	6,22,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:122:C:4:G:0:T:0:N:0:O:2	.	0,69,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29520	C	A	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:137:G:0:T:0:N:0:O:5	.	0,95,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29539	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.0	.	A:0:C:0:G:0:T:116:N:0:O:7	.	0,69,0,54	13.836	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29540	G	A	A	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	0.9316239316239316	.	A:109:C:0:G:1:T:1:N:0:O:6	.	55,62,54,55	13.836	1149.3	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	29547	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.0	.	A:119:C:0:G:0:T:0:N:0:O:1	.	0,74,0,46	6.084	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29550	C	G	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.0	.	A:0:C:119:G:0:T:0:N:0:O:2	.	0,77,0,44	4.254	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29600	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.006944444444444444	.	A:142:C:0:G:1:T:0:N:0:O:1	.	1,85,0,59	14.172	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.0	.	A:0:C:130:G:0:T:0:N:0:O:2	.	0,71,0,61	15.041	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	29607	T	A	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.007575757575757576	.	A:1:C:0:G:0:T:131:N:0:O:0	.	0,85,1,47	15.041	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00140	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00140	artic-pipeline	NB04	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	2	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,7,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	158	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	1,5,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	1,5,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,53,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	81	.	20	.	0.9753086419753086	.	A:79:C:0:G:0:T:0:N:0:O:2	.	22,24,57,57	70.0	2410.9	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.058823529411764705	.	A:111:C:0:G:7:T:0:N:0:O:1	.	7,34,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:90:N:0:O:4	.	2,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	608	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:4:C:121:G:0:T:0:N:0:O:1	.	0,60,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	649	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:3:G:0:T:132:N:0:O:4	.	2,69,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.021551724137931036	.	A:0:C:226:G:0:T:5:N:0:O:1	.	0,119,5,113	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	0,59,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:0:C:65:G:0:T:4:N:0:O:13	.	0,38,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:74:T:0:N:0:O:0	.	4,21,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:1:C:97:G:0:T:4:N:0:O:5	.	0,61,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	1461	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:2:T:0:N:0:O:1	.	2,44,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	1,51,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,50,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	0,32,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:3:C:0:G:125:T:0:N:0:O:15	.	0,58,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:1:C:195:G:0:T:4:N:0:O:1	.	0,110,4,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.15544041450777202	.	A:30:C:0:G:163:T:0:N:0:O:0	.	30,57,0,136	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	148	.	20	.	0.9797297297297297	.	A:0:C:1:G:0:T:145:N:0:O:2	.	31,33,114,115	332.039	1022.9	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	0,59,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:116:C:4:G:0:T:0:N:0:O:2	.	0,63,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.01948051948051948	.	A:3:C:1:G:0:T:145:N:0:O:5	.	0,60,3,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:62:C:0:G:1:T:2:N:0:O:3	.	2,18,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	3456	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:145:C:0:G:4:T:0:N:0:O:0	.	4,41,0,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:99:G:0:T:3:N:0:O:1	.	0,91,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:0:C:116:G:0:T:5:N:0:O:0	.	0,91,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	4170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:82:G:0:T:2:N:0:O:2	.	0,48,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4255	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:71:T:0:N:0:O:1	.	1,19,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	330	.	20	.	0.02727272727272727	.	A:0:C:0:G:309:T:9:N:0:O:12	.	0,202,9,128	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	304	.	20	.	0.046052631578947366	.	A:0:C:0:G:254:T:14:N:0:O:36	.	0,221,14,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.03765690376569038	.	A:9:C:0:G:224:T:0:N:0:O:6	.	0,118,9,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.04294478527607362	.	A:0:C:145:G:0:T:7:N:0:O:11	.	0,78,7,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4692	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:28:G:0:T:1:N:0:O:3	.	0,16,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:31:G:0:T:1:N:0:O:1	.	1,14,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4802	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:38:T:0:N:0:O:3	.	1,15,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4803	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	1,8,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4804	T	G	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:1:T:32:N:0:O:0	.	1,8,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4810	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	1,5,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4817	G	T	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:30:T:1:N:0:O:1	.	0,16,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4827	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	0,13,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	4835	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:31:T:0:N:0:O:1	.	1,15,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:24:G:0:T:1:N:0:O:1	.	0,18,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4858	T	G	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:0:G:1:T:29:N:0:O:0	.	0,13,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4908	G	C	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:39:T:0:N:0:O:1	.	0,14,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4909	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:0:T:36:N:0:O:0	.	0,13,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4910	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	0,13,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4912	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:33:C:0:G:1:T:0:N:0:O:1	.	1,14,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4913	G	T	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:26:T:1:N:0:O:0	.	1,15,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4918	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:0:T:1:N:0:O:0	.	0,14,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:0:G:1:T:23:N:0:O:1	.	0,11,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:31:G:0:T:1:N:0:O:1	.	0,16,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,16,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	1,12,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:0:G:2:T:32:N:0:O:2	.	0,15,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4951	G	T	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:0:G:37:T:1:N:0:O:0	.	1,13,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	4952	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:33:C:0:G:0:T:1:N:0:O:2	.	1,13,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:86:C:0:G:0:T:2:N:0:O:2	.	2,20,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5442	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:87:T:2:N:0:O:0	.	0,45,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5501	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:76:C:0:G:2:T:0:N:0:O:1	.	2,36,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	0,63,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	0,50,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:87:G:0:T:3:N:0:O:2	.	0,58,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.10843373493975904	.	A:0:C:74:G:0:T:9:N:0:O:0	.	0,64,9,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:0:C:5:G:0:T:67:N:0:O:2	.	0,48,5,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:88:N:0:O:3	.	0,55,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5795	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:122:C:0:G:3:T:0:N:0:O:1	.	3,52,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	5850	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,42,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.040268456375838924	.	A:0:C:141:G:0:T:6:N:0:O:2	.	0,84,6,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:82:G:0:T:2:N:0:O:8	.	1,48,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:62:C:0:G:2:T:1:N:0:O:4	.	2,27,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:61:G:0:T:2:N:0:O:3	.	1,45,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.09782608695652174	.	A:9:C:0:G:82:T:0:N:0:O:1	.	9,17,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	7487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:131:C:0:G:3:T:0:N:0:O:1	.	3,59,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:92:T:0:N:0:O:3	.	2,24,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	0,14,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7694	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,14,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:0:T:1:N:0:O:0	.	1,13,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:26:G:0:T:1:N:0:O:2	.	0,15,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7750	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,15,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7783	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:37:N:0:O:2	.	0,15,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7814	T	A	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:0:T:23:N:0:O:0	.	1,15,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7815	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	1,15,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.0625	.	A:30:C:0:G:2:T:0:N:0:O:0	.	2,9,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7894	T	G	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:0:G:1:T:27:N:0:O:0	.	0,12,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7900	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:28:N:0:O:2	.	0,14,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7922	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	0,15,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7936	G	T	T	17	accept high frequency variant	Pass	False	True	True	29	.	20	.	0.7586206896551724	.	A:0:C:0:G:7:T:22:N:0:O:0	.	10,17,12,12	13.992	139.8	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	7941	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,16,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7949	A	C	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:1:G:0:T:0:N:0:O:0	.	1,13,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	7954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	1,11,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:3:G:0:T:137:N:0:O:0	.	3,81,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	8673	C	A	C	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.023121387283236993	.	A:4:C:158:G:0:T:0:N:0:O:11	.	4,107,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	147	.	20	.	1.0	.	A:0:C:0:G:0:T:147:N:0:O:0	.	77,77,70,70	349.237	1337.0	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.12048192771084337	.	A:10:C:0:G:68:T:0:N:0:O:5	.	10,12,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:0:T:92:N:0:O:7	.	2,48,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	9045	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:94:T:2:N:0:O:0	.	2,42,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:103:G:0:T:4:N:0:O:0	.	0,65,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,58,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.03111111111111111	.	A:0:C:217:G:0:T:7:N:0:O:1	.	0,103,7,122	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	9860	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:0:T:94:N:0:O:0	.	1,43,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	9916	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:0:T:120:N:0:O:8	.	3,68,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:2:C:0:G:48:T:0:N:0:O:0	.	2,11,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:66:G:0:T:2:N:0:O:8	.	2,19,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:92:N:0:O:6	.	0,76,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10139	G	A	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.028985507246376812	.	A:6:C:0:G:201:T:0:N:0:O:0	.	6,104,0,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10152	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:0:T:2:N:0:O:0	.	2,57,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:95:T:0:N:0:O:3	.	3,45,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,55,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:107:G:0:T:3:N:0:O:4	.	0,76,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	10631	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,57,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:106:T:3:N:0:O:1	.	3,58,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10778	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:97:G:0:T:2:N:0:O:3	.	0,61,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:91:G:0:T:5:N:0:O:1	.	0,57,5,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:0:C:0:G:6:T:90:N:0:O:1	.	0,55,6,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:2:C:96:G:0:T:0:N:0:O:16	.	2,68,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:95:G:0:T:2:N:0:O:0	.	0,70,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	11764	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:3:G:0:T:132:N:0:O:2	.	1,82,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	0,63,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	12264	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:2:T:0:N:0:O:0	.	2,53,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:74:T:0:N:0:O:21	.	0,72,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:103:G:0:T:4:N:0:O:3	.	4,44,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:93:G:0:T:4:N:0:O:7	.	4,40,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:0:G:2:T:0:N:0:O:2	.	1,43,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:98:T:0:N:0:O:4	.	4,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	137	.	20	.	0.9781021897810219	.	A:134:C:0:G:0:T:0:N:0:O:3	.	50,53,84,84	210.0	1184.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0759493670886076	.	A:0:C:71:G:0:T:6:N:0:O:2	.	0,49,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:5:C:0:G:132:T:0:N:0:O:1	.	2,53,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:0:G:127:T:0:N:0:O:3	.	3,39,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:109:G:0:T:4:N:0:O:1	.	0,66,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13009	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:133:G:0:T:3:N:0:O:0	.	0,52,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13303	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:101:C:0:G:5:T:0:N:0:O:0	.	5,36,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13378	C	T	C	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.05263157894736842	.	A:0:C:162:G:0:T:9:N:0:O:0	.	0,123,9,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	13411	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.10606060606060606	.	A:0:C:58:G:0:T:7:N:0:O:1	.	0,59,7,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.07	.	A:7:C:0:G:84:T:0:N:0:O:9	.	7,29,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:85:G:0:T:2:N:0:O:2	.	0,44,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:4:C:0:G:131:T:0:N:0:O:22	.	4,78,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,49,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:96:T:0:N:0:O:0	.	3,34,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	2,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,27,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14246	A	G	A	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.022321428571428572	.	A:212:C:0:G:5:T:0:N:0:O:7	.	5,118,0,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14275	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	2,33,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:107:G:0:T:4:N:0:O:15	.	0,76,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,45,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:103:C:0:G:3:T:0:N:0:O:2	.	3,47,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:108:T:0:N:0:O:0	.	3,60,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,27,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14899	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	0,16,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14936	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,15,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:28:G:0:T:1:N:0:O:0	.	0,15,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14953	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	1,16,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14975	C	A	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:23:G:0:T:0:N:0:O:0	.	0,12,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	14978	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:28:T:0:N:0:O:0	.	0,10,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15003	T	A	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:0:T:30:N:0:O:0	.	0,14,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15061	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:27:G:0:T:1:N:0:O:2	.	0,14,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15069	T	G	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:0:G:1:T:33:N:0:O:0	.	1,13,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15073	A	T	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:0:T:1:N:0:O:0	.	0,12,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15076	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:21:N:0:O:1	.	0,12,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15086	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:23:T:0:N:0:O:1	.	1,10,0,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15089	C	A	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:24:G:0:T:0:N:0:O:5	.	1,14,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,13,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15126	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,16,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15127	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:28:N:0:O:2	.	0,14,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15331	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:113:C:0:G:3:T:0:N:0:O:7	.	2,60,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:107:N:0:O:1	.	0,64,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:4:C:0:G:108:T:0:N:0:O:1	.	4,63,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.17142857142857143	.	A:0:C:56:G:0:T:12:N:0:O:2	.	0,35,12,35	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:94:G:0:T:3:N:0:O:1	.	0,48,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	16209	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	0,39,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:39:G:0:T:1:N:0:O:1	.	1,37,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:0:T:1:N:0:O:0	.	1,19,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:47:G:1:T:0:N:0:O:1	.	1,18,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16407	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:70:G:0:T:2:N:0:O:4	.	0,42,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:78:G:0:T:3:N:0:O:4	.	0,53,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16822	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:46:T:0:N:0:O:2	.	0,21,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:0:G:4:T:97:N:0:O:3	.	0,56,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	0,44,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	16859	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,38,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:83:G:0:T:3:N:0:O:10	.	0,59,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:2:G:0:T:0:N:0:O:0	.	2,35,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.029045643153526972	.	A:213:C:0:G:7:T:1:N:0:O:20	.	7,94,0,147	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.041884816753926704	.	A:8:C:0:G:170:T:0:N:0:O:13	.	8,41,0,150	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:86:C:0:G:2:T:0:N:0:O:2	.	2,12,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:92:C:0:G:5:T:0:N:0:O:1	.	5,30,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,30,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:83:G:0:T:2:N:0:O:3	.	0,62,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	17531	T	C	C	17	accept high frequency variant	Pass	False	True	True	110	.	20	.	0.990909090909091	.	A:0:C:109:G:0:T:1:N:0:O:0	.	49,49,60,61	210.0	937.3	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:5:C:0:G:103:T:0:N:0:O:1	.	5,43,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.06493506493506493	.	A:0:C:72:G:0:T:5:N:0:O:0	.	0,47,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,54,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:83:G:0:T:4:N:0:O:1	.	0,44,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:102:C:0:G:0:T:3:N:0:O:4	.	0,63,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17667	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:101:T:0:N:0:O:0	.	2,51,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.057971014492753624	.	A:0:C:188:G:0:T:12:N:0:O:7	.	1,102,11,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.11267605633802817	.	A:0:C:61:G:1:T:8:N:0:O:1	.	0,40,8,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.07766990291262135	.	A:84:C:0:G:1:T:8:N:0:O:10	.	0,43,8,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:106:T:0:N:0:O:1	.	0,64,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17849	G	C	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:3:G:132:T:0:N:0:O:3	.	0,65,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:118:G:0:T:3:N:0:O:4	.	0,60,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:102:T:0:N:0:O:1	.	4,27,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	18100	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:2:G:0:T:0:N:0:O:0	.	1,47,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:4:C:0:G:135:T:0:N:0:O:1	.	4,11,0,129	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:0:C:104:G:0:T:5:N:0:O:0	.	0,64,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:1:G:3:T:90:N:0:O:0	.	3,27,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	18441	C	A	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:4:C:140:G:0:T:0:N:0:O:0	.	4,48,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	105	.	20	.	0.9714285714285714	.	A:0:C:102:G:0:T:3:N:0:O:0	.	50,50,52,55	203.216	1582.6	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:93:N:0:O:3	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	18879	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:97:C:0:G:3:T:1:N:0:O:2	.	3,33,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.04225352112676056	.	A:0:C:134:G:0:T:6:N:0:O:2	.	0,77,6,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:0:C:4:G:0:T:126:N:0:O:2	.	0,76,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	19694	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:128:G:0:T:3:N:0:O:1	.	0,76,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.016483516483516484	.	A:3:C:0:G:0:T:141:N:0:O:38	.	0,78,3,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:100:T:0:N:0:O:1	.	3,32,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:69:C:1:G:2:T:0:N:0:O:5	.	2,30,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	20542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:2:C:4:G:0:T:186:N:0:O:8	.	0,117,4,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:72:C:0:G:2:T:0:N:0:O:2	.	2,34,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:70:T:0:N:0:O:1	.	2,28,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20679	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:0:G:53:T:2:N:0:O:1	.	2,30,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20781	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,49,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:48:G:0:T:1:N:0:O:4	.	1,15,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:135:C:0:G:3:T:0:N:0:O:0	.	3,39,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04032258064516129	.	A:5:C:0:G:118:T:0:N:0:O:1	.	5,27,0,97	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:0:G:3:T:74:N:0:O:0	.	3,6,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21409	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:47:G:0:T:1:N:0:O:1	.	0,40,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:67:C:0:G:0:T:3:N:0:O:0	.	3,22,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:92:T:0:N:0:O:4	.	3,48,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,42,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21763	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	0,40,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:59:G:0:T:2:N:0:O:3	.	0,42,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:1:N:0:O:0	.	2,31,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:88:T:0:N:0:O:3	.	2,34,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:2:T:0:N:0:O:0	.	2,12,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	1,54,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:102:G:0:T:4:N:0:O:2	.	0,69,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	22621	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	0,72,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:113:G:0:T:4:N:0:O:3	.	0,66,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	22771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:119:C:0:G:3:T:0:N:0:O:2	.	3,23,0,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:3:T:109:N:0:O:19	.	0,66,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.01818181818181818	.	A:0:C:123:G:0:T:3:N:0:O:39	.	1,78,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:88:N:0:O:0	.	1,66,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23424	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:0:C:136:G:0:T:4:N:0:O:2	.	1,86,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:43:G:0:T:2:N:0:O:0	.	0,29,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23515	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:42:C:0:G:0:T:1:N:0:O:7	.	0,32,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,10,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,21,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,15,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23586	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:34:C:0:G:1:T:0:N:0:O:2	.	1,13,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23587	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:40:T:0:N:0:O:0	.	1,14,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23597	A	C	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:41:C:1:G:0:T:0:N:0:O:1	.	0,26,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23598	A	C	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:1:G:0:T:0:N:0:O:0	.	0,25,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:0:C:35:G:0:T:2:N:0:O:2	.	0,31,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23614	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,21,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:32:G:0:T:1:N:0:O:3	.	0,17,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:45:N:0:O:4	.	0,28,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23754	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:1:T:45:N:0:O:1	.	0,25,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,19,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.1417910447761194	.	A:0:C:115:G:0:T:19:N:0:O:0	.	0,103,19,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.029069767441860465	.	A:167:C:0:G:0:T:5:N:0:O:0	.	5,102,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:4:C:0:G:0:T:66:N:0:O:0	.	4,40,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:102:G:0:T:1:N:0:O:10	.	3,57,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	152	.	20	.	1.0	.	A:0:C:0:G:0:T:152:N:0:O:0	.	93,93,59,59	209.237	807.2	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.10344827586206896	.	A:9:C:0:G:77:T:0:N:0:O:1	.	9,22,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:94:G:0:T:4:N:0:O:0	.	0,89,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24238	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:87:N:0:O:0	.	0,60,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24316	G	C	G	12	misc mixed variant	Check	False	False	True	136	.	20	.	0.5220588235294118	.	A:0:C:71:G:64:T:0:N:0:O:1	.	41,68,30,68	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:119:G:0:T:0:N:0:O:2	.	3,57,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24661	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:136:C:0:G:3:T:0:N:0:O:1	.	3,54,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24667	A	T	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:136:C:0:G:0:T:3:N:0:O:2	.	1,80,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24676	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:87:C:0:G:3:T:0:N:0:O:2	.	2,36,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:122:T:0:N:0:O:19	.	3,68,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	0,60,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:89:N:0:O:1	.	0,63,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:75:N:0:O:0	.	1,25,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:97:N:0:O:0	.	3,32,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:84:G:0:T:2:N:0:O:5	.	0,64,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	25560	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	2,32,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:0:C:95:G:0:T:2:N:0:O:13	.	0,67,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:58:C:4:G:0:T:0:N:0:O:3	.	0,43,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,74,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	0,51,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,36,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26070	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:123:C:0:G:3:T:0:N:0:O:0	.	3,64,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26082	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:118:G:0:T:3:N:0:O:4	.	1,79,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,39,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,68,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.01675977653631285	.	A:0:C:126:G:0:T:3:N:0:O:50	.	0,97,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:3:G:0:T:75:N:0:O:0	.	1,51,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:2:T:0:N:0:O:1	.	2,24,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:5:C:0:G:89:T:0:N:0:O:0	.	5,27,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:96:T:0:N:0:O:1	.	3,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.041379310344827586	.	A:0:C:139:G:0:T:6:N:0:O:0	.	0,119,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.036458333333333336	.	A:0:C:7:G:0:T:185:N:0:O:0	.	0,135,7,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:83:N:0:O:0	.	0,35,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:100:N:0:O:1	.	0,65,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:7:C:0:G:78:T:0:N:0:O:0	.	7,15,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	1.0	.	A:0:C:109:G:0:T:0:N:0:O:0	.	57,57,52,52	276.227	1203.7	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:90:G:1:T:3:N:0:O:1	.	1,61,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26784	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	0,77,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:3:T:114:N:0:O:2	.	0,62,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:126:C:0:G:0:T:3:N:0:O:2	.	0,82,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	3,47,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:0:C:111:G:0:T:5:N:0:O:1	.	0,95,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:127:G:0:T:3:N:0:O:3	.	0,104,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,51,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:119:G:0:T:4:N:0:O:15	.	0,72,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27439	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:96:T:0:N:0:O:4	.	2,42,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:2:T:0:N:0:O:2	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27482	T	C	T	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:0:C:4:G:0:T:177:N:0:O:0	.	1,131,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27485	T	A	T	16	ignore low frequency variant	Pass	False	False	True	300	.	20	.	0.02	.	A:6:C:0:G:0:T:220:N:0:O:74	.	5,207,1,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,57,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:5:C:89:G:0:T:0:N:0:O:0	.	5,62,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.032467532467532464	.	A:111:C:0:G:0:T:5:N:0:O:38	.	5,120,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:2:G:0:T:0:N:0:O:2	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27889	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:55:G:0:T:2:N:0:O:0	.	0,17,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	27953	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:0:T:48:N:0:O:0	.	0,29,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	62	.	20	.	1.0	.	A:0:C:62:G:0:T:0:N:0:O:0	.	33,33,29,29	280.0	995.3	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	28079	G	T	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:0:G:69:T:2:N:0:O:0	.	0,41,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	215	.	20	.	0.9767441860465116	.	A:0:C:210:G:0:T:3:N:0:O:2	.	87,89,123,126	490.0	1740.2	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	28151	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:0:T:84:N:0:O:1	.	0,42,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:6:C:0:G:0:T:73:N:0:O:4	.	3,36,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28232	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:124:G:0:T:3:N:0:O:1	.	0,55,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:97:T:0:N:0:O:2	.	3,39,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28571	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:98:C:0:G:0:T:2:N:0:O:3	.	0,66,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	0,69,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	1,42,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28684	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:91:C:0:G:0:T:2:N:0:O:4	.	0,38,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:93:C:0:G:5:T:0:N:0:O:0	.	4,15,1,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:0:C:70:G:0:T:4:N:0:O:8	.	0,28,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:2:G:0:T:54:N:0:O:1	.	0,25,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	98	.	20	.	0.9897959183673469	.	A:0:C:0:G:97:T:0:N:0:O:1	.	22,23,75,75	171.873	1432.2	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:5:C:0:G:107:T:1:N:0:O:0	.	5,13,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:106:G:0:T:5:N:0:O:5	.	0,97,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29055	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:1:G:0:T:0:N:0:O:0	.	1,12,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:4:G:0:T:83:N:0:O:0	.	1,36,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:83:G:0:T:0:N:0:O:2	.	2,23,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:63:C:0:G:3:T:0:N:0:O:3	.	0,47,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:120:G:0:T:3:N:0:O:1	.	0,75,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.06422018348623854	.	A:99:C:0:G:7:T:0:N:0:O:3	.	7,29,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:106:T:0:N:0:O:6	.	4,30,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29578	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:0:C:135:G:0:T:5:N:0:O:4	.	3,82,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29609	T	G	T	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.0	.	A:0:C:0:G:0:T:153:N:0:O:1	.	0,95,0,59	1.339	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29614	C	G	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0	.	A:0:C:142:G:0:T:1:N:0:O:3	.	0,69,0,77	11.055	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29615	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.0	.	A:155:C:0:G:0:T:0:N:0:O:0	.	0,71,0,84	11.055	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	29661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.0	.	A:0:C:0:G:0:T:157:N:0:O:2	.	0,84,0,75	6.206	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00141	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00141	artic-pipeline	NB05	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	2	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	65	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:30:N:0:O:1	.	0,7,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.058823529411764705	.	A:0:C:31:G:0:T:2:N:0:O:1	.	0,5,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	106	C	T	T	14	new position at high frequency	Pass	False	True	True	35	.	20	.	1.0	.	A:0:C:0:G:0:T:35:N:0:O:0	.	5,5,30,30	70.0	764.4	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,6,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	180	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.09523809523809523	.	A:0:C:18:G:0:T:2:N:0:O:1	.	0,8,2,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	190	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,6,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,5,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	201	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,5,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	31	.	20	.	1.0	.	A:0:C:0:G:0:T:31:N:0:O:0	.	4,4,27,27	139.237	1081.8	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,5,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,6,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,42,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	684	T	A	T	16	ignore low frequency variant	Pass	False	False	True	303	.	20	.	0.0297029702970297	.	A:9:C:0:G:0:T:270:N:0:O:24	.	1,112,8,191	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	995	C	G	C	16	ignore low frequency variant	Pass	False	False	True	307	.	20	.	0.035830618892508145	.	A:0:C:295:G:11:T:1:N:0:O:0	.	5,136,6,171	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:0:C:68:G:0:T:4:N:0:O:6	.	0,47,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	1160	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:97:C:0:G:2:T:0:N:0:O:9	.	2,51,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1342	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:57:G:0:T:2:N:0:O:5	.	0,8,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,47,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:110:N:0:O:0	.	1,49,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,40,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	0,35,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	0,48,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:66:G:0:T:2:N:0:O:0	.	2,9,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:87:G:2:T:0:N:0:O:6	.	1,41,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:60:C:0:G:3:T:0:N:0:O:10	.	2,31,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:77:C:0:G:4:T:0:N:0:O:2	.	1,26,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:3:C:0:G:127:T:0:N:0:O:13	.	0,61,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.10655737704918032	.	A:13:C:0:G:108:T:0:N:0:O:1	.	13,36,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	2261	A	T	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:0:T:1:N:0:O:0	.	1,9,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	2481	T	G	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:0:G:1:T:22:N:0:O:0	.	1,9,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.027906976744186046	.	A:208:C:6:G:0:T:0:N:0:O:1	.	6,106,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.024509803921568627	.	A:194:C:0:G:5:T:0:N:0:O:5	.	5,95,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:163:C:0:G:4:T:0:N:0:O:18	.	4,70,0,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:129:C:0:G:3:T:1:N:0:O:0	.	0,88,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:83:T:0:N:0:O:5	.	3,42,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:94:G:0:T:2:N:0:O:3	.	0,60,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:0:G:2:T:0:N:0:O:0	.	2,23,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:0:G:3:T:74:N:0:O:18	.	1,51,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:5:C:0:G:106:T:0:N:0:O:1	.	1,61,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0707070707070707	.	A:0:C:92:G:0:T:7:N:0:O:0	.	0,73,7,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	4212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:90:G:0:T:2:N:0:O:7	.	0,30,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4255	G	A	A	17	accept high frequency variant	Pass	False	True	True	116	.	20	.	0.9913793103448276	.	A:115:C:0:G:1:T:0:N:0:O:0	.	30,31,85,85	279.237	1451.1	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:0:T:110:N:0:O:25	.	0,46,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	244	.	20	.	0.020491803278688523	.	A:0:C:0:G:230:T:5:N:0:O:9	.	0,144,5,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.022321428571428572	.	A:0:C:0:G:192:T:5:N:0:O:27	.	0,150,5,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.03398058252427184	.	A:7:C:0:G:197:T:0:N:0:O:2	.	0,98,7,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:0:C:131:G:0:T:5:N:0:O:8	.	0,67,5,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.03125	.	A:145:C:0:G:0:T:5:N:0:O:10	.	0,90,5,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:0:T:2:N:0:O:0	.	1,30,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	0,26,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4795	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:43:G:0:T:1:N:0:O:5	.	0,25,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	4841	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:40:T:0:N:0:O:5	.	1,12,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:0:G:2:T:60:N:0:O:1	.	0,36,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	4972	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:101:T:0:N:0:O:2	.	3,52,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5090	C	T	T	14	new position at high frequency	Pass	False	True	True	53	.	20	.	0.9622641509433962	.	A:0:C:0:G:0:T:51:N:0:O:2	.	30,32,21,21	70.0	579.2	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5100	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:40:G:0:T:1:N:0:O:3	.	0,41,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5130	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	0,24,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:44:T:1:N:0:O:1	.	1,18,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:44:N:0:O:2	.	0,16,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5183	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	1,13,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	5223	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	0,26,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	5258	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:48:C:0:G:1:T:0:N:0:O:2	.	1,22,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5261	T	A	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:0:T:33:N:0:O:0	.	1,30,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:3:C:0:G:64:T:0:N:0:O:0	.	3,24,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	5317	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:128:C:0:G:3:T:0:N:0:O:0	.	3,81,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,74,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5402	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:65:G:0:T:2:N:0:O:5	.	0,44,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:74:C:0:G:2:T:0:N:0:O:4	.	1,43,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,45,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:97:C:0:G:0:T:3:N:0:O:14	.	0,79,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:96:T:0:N:0:O:2	.	2,64,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	5564	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,66,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5605	G	A	G	16	ignore low frequency variant	Pass	False	False	True	304	.	20	.	0.019736842105263157	.	A:6:C:0:G:256:T:0:N:0:O:42	.	5,188,1,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5608	A	G	A	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.037815126050420166	.	A:228:C:0:G:9:T:0:N:0:O:1	.	4,124,5,114	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:102:G:0:T:3:N:0:O:2	.	0,63,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.0963855421686747	.	A:0:C:72:G:0:T:8:N:0:O:3	.	0,64,8,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:4:G:0:T:69:N:0:O:3	.	0,48,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5821	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:111:C:0:G:3:T:1:N:0:O:0	.	3,46,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	5829	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.0364963503649635	.	A:130:C:0:G:5:T:0:N:0:O:2	.	2,67,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:131:G:0:T:3:N:0:O:1	.	0,88,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6533	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:49:T:1:N:0:O:0	.	1,29,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6536	G	T	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:41:T:1:N:0:O:1	.	1,28,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6549	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,22,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6565	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,11,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6566	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	1,11,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6589	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:36:T:0:N:0:O:2	.	1,15,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6590	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,17,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6592	A	C	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:39:C:1:G:0:T:0:N:0:O:2	.	0,18,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,23,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:30:G:0:T:1:N:0:O:1	.	0,13,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:0:G:1:T:40:N:0:O:2	.	0,22,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6684	A	T	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:29:C:0:G:0:T:1:N:0:O:1	.	1,14,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6691	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,24,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:46:G:0:T:1:N:0:O:1	.	0,28,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6702	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,28,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:1:G:0:T:49:N:0:O:1	.	0,28,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:36:G:0:T:1:N:0:O:1	.	0,23,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6855	C	A	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:33:G:0:T:0:N:0:O:1	.	0,14,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6859	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:0:G:1:T:0:N:0:O:1	.	0,16,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6861	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:35:G:0:T:1:N:0:O:5	.	0,23,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	6883	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:37:G:0:T:1:N:0:O:1	.	0,16,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6884	G	T	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:0:G:29:T:1:N:0:O:0	.	0,6,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	6890	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:25:N:0:O:0	.	1,13,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6921	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,13,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6925	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:38:C:0:G:1:T:0:N:0:O:2	.	0,19,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6929	A	T	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:37:C:0:G:0:T:1:N:0:O:1	.	0,19,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:0:G:41:T:1:N:0:O:0	.	0,21,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6978	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,19,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	6980	T	G	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:0:G:1:T:40:N:0:O:1	.	1,19,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7036	A	T	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:36:C:0:G:0:T:1:N:0:O:1	.	0,20,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7047	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,13,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	2,36,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,31,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	7700	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,16,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:0:C:2:G:0:T:43:N:0:O:6	.	0,36,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	0,29,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7730	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:0:T:42:N:0:O:3	.	0,31,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7731	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:0:T:1:N:0:O:0	.	0,26,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7750	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:0:T:1:N:0:O:0	.	1,25,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:1:G:0:T:0:N:0:O:1	.	1,27,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7806	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.14285714285714285	.	A:36:C:0:G:0:T:6:N:0:O:0	.	6,20,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7814	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:0:T:36:N:0:O:0	.	0,25,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7815	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,25,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	1,19,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	1,26,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,23,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7854	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:0:T:1:N:0:O:0	.	0,22,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7904	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:0:G:1:T:48:N:0:O:0	.	1,29,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.24444444444444444	.	A:0:C:34:G:0:T:11:N:0:O:0	.	6,27,5,18	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	1,25,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	7966	A	T	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:42:C:0:G:1:T:1:N:0:O:0	.	0,19,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8336	T	G	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.07407407407407407	.	A:0:C:0:G:2:T:25:N:0:O:0	.	0,11,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8373	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,12,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8430	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:23:G:0:T:1:N:0:O:1	.	0,13,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:23:N:0:O:0	.	0,12,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8459	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:22:T:0:N:0:O:0	.	1,12,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8536	G	C	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:29:T:0:N:0:O:0	.	0,13,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8540	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	1,12,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8579	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:24:G:0:T:1:N:0:O:1	.	0,13,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.10256410256410256	.	A:8:C:0:G:68:T:0:N:0:O:2	.	8,13,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:91:T:0:N:0:O:11	.	2,40,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:0:T:56:N:0:O:1	.	2,45,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:0:T:80:N:0:O:10	.	3,51,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9106	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:1:T:69:N:0:O:0	.	0,41,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04032258064516129	.	A:0:C:0:G:119:T:5:N:0:O:0	.	0,62,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.016853932584269662	.	A:0:C:118:G:0:T:3:N:0:O:57	.	2,128,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:110:G:0:T:0:N:0:O:9	.	0,78,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:90:G:1:T:2:N:0:O:8	.	0,77,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9882	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	1,11,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	9894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:23:N:0:O:1	.	0,15,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	1,14,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	10095	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:22:C:0:G:1:T:0:N:0:O:5	.	1,9,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10098	G	T	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:0:G:23:T:1:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10120	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:0:T:136:N:0:O:6	.	0,81,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10139	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:135:T:0:N:0:O:2	.	3,65,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,29,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.023255813953488372	.	A:5:C:0:G:209:T:0:N:0:O:1	.	5,83,0,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	2,36,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10506	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:144:C:0:G:3:T:0:N:0:O:2	.	2,77,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10648	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.12857142857142856	.	A:122:C:0:G:18:T:0:N:0:O:0	.	10,71,8,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:0:G:103:T:4:N:0:O:2	.	4,64,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.025	.	A:1:C:6:G:0:T:232:N:0:O:1	.	0,153,6,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:93:N:0:O:5	.	0,80,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:94:N:0:O:5	.	0,62,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11021	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:0:T:2:N:0:O:1	.	2,56,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:101:N:0:O:1	.	0,81,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11413	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.08396946564885496	.	A:119:C:0:G:11:T:0:N:0:O:1	.	7,74,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11425	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.061946902654867256	.	A:105:C:0:G:7:T:0:N:0:O:1	.	3,71,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11445	T	A	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:0:T:117:N:0:O:2	.	1,82,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.15625	.	A:0:C:78:G:0:T:15:N:0:O:3	.	0,65,15,31	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.015	.	A:0:C:0:G:123:T:3:N:0:O:74	.	0,62,3,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.05555555555555555	.	A:51:C:0:G:3:T:0:N:0:O:0	.	0,33,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:96:G:0:T:3:N:0:O:1	.	2,49,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12244	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:0:C:5:G:0:T:112:N:0:O:0	.	5,63,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12245	G	C	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03759398496240601	.	A:0:C:5:G:128:T:0:N:0:O:0	.	5,68,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:62:T:0:N:0:O:21	.	0,78,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:95:G:0:T:3:N:0:O:5	.	3,37,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.05405405405405406	.	A:101:C:0:G:6:T:0:N:0:O:4	.	6,49,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:8:C:0:G:93:T:0:N:0:O:4	.	7,42,1,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12428	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:99:T:0:N:0:O:0	.	4,39,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:81:G:0:T:2:N:0:O:6	.	1,47,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:4:C:0:G:180:T:0:N:0:O:0	.	4,68,0,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12467	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,37,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:91:N:0:O:1	.	0,58,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:82:G:0:T:3:N:0:O:3	.	0,68,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02830188679245283	.	A:6:C:0:G:204:T:0:N:0:O:2	.	6,67,0,145	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:116:C:0:G:3:T:0:N:0:O:4	.	3,49,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:101:G:0:T:5:N:0:O:0	.	0,60,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:1:G:0:T:127:N:0:O:10	.	3,84,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13379	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	1,58,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:65:G:0:T:4:N:0:O:2	.	0,56,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:90:T:0:N:0:O:3	.	3,25,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:113:G:0:T:0:N:0:O:6	.	3,47,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:0:G:133:T:0:N:0:O:2	.	4,28,0,111	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.029069767441860465	.	A:0:C:166:G:0:T:5:N:0:O:1	.	0,96,5,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:114:T:0:N:0:O:0	.	3,43,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:105:C:0:G:3:T:0:N:0:O:2	.	0,54,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14108	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,48,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14275	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:87:C:0:G:2:T:0:N:0:O:4	.	2,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:106:G:0:T:5:N:0:O:2	.	0,56,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	68	.	20	.	0.9852941176470589	.	A:0:C:0:G:0:T:67:N:0:O:1	.	31,32,36,36	401.314	1149.0	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	14594	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:0:G:114:T:3:N:0:O:0	.	3,51,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:88:T:0:N:0:O:1	.	3,28,1,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:89:C:0:G:3:T:0:N:0:O:4	.	3,56,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14913	C	A	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:22:G:0:T:0:N:0:O:2	.	1,12,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14977	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,18,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	14996	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,24,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15011	A	C	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:36:C:2:G:0:T:0:N:0:O:1	.	2,23,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15013	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:40:T:0:N:0:O:0	.	1,25,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15014	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:0:T:1:N:0:O:0	.	1,26,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15071	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:36:N:0:O:0	.	1,23,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15109	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:28:T:0:N:0:O:0	.	1,21,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15114	T	G	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:1:T:36:N:0:O:0	.	1,26,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15131	G	T	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:0:G:27:T:1:N:0:O:0	.	1,17,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15147	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:31:C:0:G:1:T:0:N:0:O:1	.	1,18,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15155	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,23,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15156	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	1,20,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15157	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:37:G:0:T:1:N:0:O:8	.	1,28,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15186	T	A	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:0:T:39:N:0:O:5	.	1,30,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15189	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:31:C:0:G:1:T:0:N:0:O:1	.	0,18,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15190	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15772	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:82:C:0:G:2:T:0:N:0:O:2	.	2,52,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.19298245614035087	.	A:0:C:45:G:0:T:11:N:0:O:1	.	1,22,10,35	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	16029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:120:N:0:O:0	.	0,71,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:92:G:0:T:4:N:0:O:0	.	0,62,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	16212	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.05263157894736842	.	A:2:C:0:G:36:T:0:N:0:O:0	.	1,16,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16220	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,12,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16241	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,16,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16273	T	A	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:0:T:33:N:0:O:0	.	1,16,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16289	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:28:G:0:T:1:N:0:O:3	.	0,11,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	16385	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,10,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16386	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:27:G:0:T:1:N:0:O:1	.	1,15,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16394	C	A	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:34:G:0:T:0:N:0:O:2	.	1,17,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16419	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:30:N:0:O:3	.	0,19,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.11363636363636363	.	A:0:C:10:G:0:T:78:N:0:O:0	.	6,44,4,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:0:G:82:T:5:N:0:O:3	.	5,43,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,60,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:7:C:0:G:74:T:0:N:0:O:4	.	7,22,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:82:C:0:G:3:T:0:N:0:O:4	.	3,30,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:2:C:62:G:0:T:4:N:0:O:3	.	0,51,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:0:G:4:T:99:N:0:O:8	.	0,63,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	16966	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	3,43,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:117:G:0:T:0:N:0:O:2	.	3,56,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.0970873786407767	.	A:92:C:0:G:10:T:0:N:0:O:1	.	10,45,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,28,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.07	.	A:7:C:0:G:93:T:0:N:0:O:0	.	7,31,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:76:T:0:N:0:O:1	.	3,41,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.03260869565217391	.	A:0:C:178:G:0:T:6:N:0:O:0	.	3,92,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.055248618784530384	.	A:0:C:163:G:0:T:10:N:0:O:8	.	0,89,10,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.10294117647058823	.	A:0:C:60:G:0:T:7:N:0:O:1	.	0,36,7,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0707070707070707	.	A:82:C:0:G:0:T:7:N:0:O:10	.	0,34,7,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:5:C:0:G:89:T:0:N:0:O:0	.	0,52,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18249	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	0,55,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18264	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	1,49,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	18266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.046153846153846156	.	A:3:C:0:G:62:T:0:N:0:O:0	.	1,29,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:83:N:0:O:0	.	2,22,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:115:G:0:T:3:N:0:O:1	.	0,61,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18516	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:89:T:0:N:0:O:0	.	0,60,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	1,30,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:32:C:0:G:0:T:1:N:0:O:2	.	0,23,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:0:G:3:T:92:N:0:O:0	.	3,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:0:C:173:G:0:T:4:N:0:O:4	.	0,87,4,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.024539877300613498	.	A:4:C:0:G:158:T:0:N:0:O:1	.	4,32,0,131	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.02577319587628866	.	A:5:C:0:G:0:T:155:N:0:O:34	.	0,83,5,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:126:C:0:G:0:T:5:N:0:O:0	.	0,76,5,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:0:N:0:O:1	.	2,21,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:61:C:0:G:3:T:0:N:0:O:7	.	3,25,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	20397	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:0:N:0:O:1	.	1,28,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:106:C:0:G:3:T:0:N:0:O:1	.	3,53,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:87:N:0:O:0	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:83:T:0:N:0:O:6	.	3,36,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20719	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	1,49,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:66:T:0:N:0:O:0	.	3,23,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:68:G:0:T:3:N:0:O:14	.	3,34,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	20940	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:98:T:2:N:0:O:0	.	2,43,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21060	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,41,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:30:N:0:O:1	.	0,17,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21430	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:22:T:0:N:0:O:1	.	0,13,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:1:T:0:N:0:O:0	.	1,7,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:37:T:0:N:0:O:1	.	1,15,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21449	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	1,14,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,18,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21489	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,9,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21503	T	G	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:0:G:1:T:23:N:0:O:0	.	1,16,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,19,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21603	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:40:C:0:G:1:T:0:N:0:O:4	.	1,18,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21615	T	G	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:0:G:1:T:33:N:0:O:0	.	0,18,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:32:N:0:O:2	.	0,19,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21646	C	A	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:27:G:0:T:0:N:0:O:1	.	1,11,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21680	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	1,18,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:64:G:0:T:2:N:0:O:5	.	1,21,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21794	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:2:T:0:N:0:O:1	.	2,27,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,30,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:0:G:69:T:2:N:0:O:0	.	2,45,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.0364963503649635	.	A:131:C:0:G:5:T:0:N:0:O:1	.	5,73,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:80:T:0:N:0:O:2	.	2,46,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22216	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	2,77,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:0:G:5:T:90:N:0:O:0	.	5,41,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22272	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:134:T:0:N:0:O:0	.	2,77,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:0:G:3:T:145:N:0:O:0	.	2,86,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22301	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:93:C:0:G:3:T:0:N:0:O:1	.	3,55,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:5:C:0:G:126:T:0:N:0:O:1	.	5,28,0,104	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23039	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:147:G:0:T:3:N:0:O:0	.	0,86,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:1:N:0:O:0	.	2,61,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:138:G:0:T:3:N:0:O:8	.	0,116,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	150	.	20	.	0.9133333333333333	.	A:0:C:0:G:137:T:0:N:0:O:13	.	85,98,52,52	482.939	1911.6	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	23460	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:119:T:0:N:0:O:0	.	1,76,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23595	C	T	T	14	new position at high frequency	Pass	False	True	True	78	.	20	.	1.0	.	A:0:C:0:G:0:T:78:N:0:O:0	.	38,38,40,40	280.0	648.1	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23627	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:2:T:0:N:0:O:0	.	1,27,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:48:G:0:T:1:N:0:O:3	.	0,16,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23854	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.07344632768361582	.	A:0:C:162:G:0:T:13:N:0:O:2	.	7,98,6,79	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.09219858156028368	.	A:0:C:128:G:0:T:13:N:0:O:0	.	0,102,13,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.028089887640449437	.	A:173:C:0:G:0:T:5:N:0:O:0	.	5,96,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.06349206349206349	.	A:4:C:0:G:0:T:59:N:0:O:0	.	4,34,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:4:G:0:T:86:N:0:O:0	.	2,30,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:109:G:0:T:1:N:0:O:6	.	3,58,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24037	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.07692307692307693	.	A:119:C:0:G:10:T:0:N:0:O:1	.	6,66,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:105:T:0:N:0:O:2	.	3,29,1,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:129:G:0:T:3:N:0:O:0	.	0,98,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24237	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	1,60,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.07462686567164178	.	A:0:C:55:G:0:T:5:N:0:O:7	.	0,59,5,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.06329113924050633	.	A:5:C:0:G:74:T:0:N:0:O:0	.	5,16,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:78:T:0:N:0:O:4	.	3,19,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24278	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:0:T:73:N:0:O:0	.	2,13,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:105:C:0:G:3:T:0:N:0:O:1	.	3,47,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24422	C	A	C	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.030864197530864196	.	A:5:C:139:G:0:T:0:N:0:O:18	.	3,81,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:110:G:0:T:0:N:0:O:1	.	3,66,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:105:C:1:G:0:T:3:N:0:O:6	.	3,89,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	1,80,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24511	T	C	T	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.06060606060606061	.	A:0:C:10:G:0:T:155:N:0:O:0	.	2,97,8,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.07563025210084033	.	A:0:C:108:G:0:T:9:N:0:O:2	.	0,92,9,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03759398496240601	.	A:5:C:0:G:105:T:0:N:0:O:23	.	5,68,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:98:C:0:G:4:T:0:N:0:O:0	.	4,53,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	0,63,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:102:G:0:T:3:N:0:O:2	.	0,82,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	24953	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	2,56,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:104:T:0:N:0:O:0	.	3,50,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	25367	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:96:C:0:G:8:T:0:N:0:O:1	.	0,49,8,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.08695652173913043	.	A:0:C:0:G:8:T:83:N:0:O:1	.	8,25,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:85:G:0:T:3:N:0:O:8	.	0,68,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	25554	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:0:C:4:G:0:T:74:N:0:O:1	.	0,46,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	25604	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:98:N:0:O:1	.	0,53,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.07575757575757576	.	A:60:C:5:G:0:T:0:N:0:O:1	.	1,44,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:102:G:0:T:3:N:0:O:1	.	0,73,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.020942408376963352	.	A:4:C:0:G:182:T:0:N:0:O:5	.	4,70,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	1,38,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:96:T:0:N:0:O:0	.	3,50,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:90:C:0:G:2:T:0:N:0:O:3	.	2,34,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:85:T:0:N:0:O:1	.	2,21,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.034013605442176874	.	A:0:C:142:G:0:T:5:N:0:O:0	.	0,117,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:121:C:1:G:0:T:3:N:0:O:2	.	0,64,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	2,42,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:0:C:5:G:0:T:69:N:0:O:0	.	0,20,5,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26659	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:92:N:0:O:0	.	1,37,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	0,53,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:3:G:0:T:89:N:0:O:0	.	0,56,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0851063829787234	.	A:8:C:0:G:83:T:1:N:0:O:2	.	8,17,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26728	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,52,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26731	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:4:G:0:T:91:N:0:O:0	.	0,53,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:0:T:2:N:0:O:2	.	0,53,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:5:C:0:G:95:T:0:N:0:O:1	.	5,34,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27018	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.05128205128205128	.	A:146:C:0:G:8:T:0:N:0:O:2	.	7,85,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:7:C:0:G:85:T:0:N:0:O:0	.	7,25,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27096	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:130:T:0:N:0:O:1	.	3,65,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27098	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:4:T:101:N:0:O:0	.	4,46,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.08823529411764706	.	A:0:C:93:G:0:T:9:N:0:O:0	.	0,83,9,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:109:G:0:T:3:N:0:O:0	.	0,82,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27142	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:3:T:0:N:0:O:0	.	3,58,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0707070707070707	.	A:0:C:7:G:1:T:91:N:0:O:0	.	0,48,7,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.057971014492753624	.	A:0:C:118:G:0:T:8:N:0:O:12	.	0,59,8,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27438	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:5:C:0:G:0:T:96:N:0:O:3	.	0,36,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27692	T	A	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:2:C:0:G:0:T:66:N:0:O:0	.	2,34,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27848	A	C	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:21:C:1:G:0:T:0:N:0:O:1	.	1,10,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27868	A	C	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:1:G:0:T:0:N:0:O:0	.	0,14,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27906	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	0,13,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27932	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	0,10,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	27940	T	A	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:0:T:22:N:0:O:1	.	0,14,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28003	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	1,13,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28008	A	T	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:0:T:1:N:0:O:0	.	0,14,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28033	T	A	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:0:T:23:N:0:O:0	.	0,13,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28069	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,8,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:0:T:106:N:0:O:4	.	3,78,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28350	G	T	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.07462686567164178	.	A:0:C:0:G:186:T:15:N:0:O:0	.	8,134,7,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:71:G:0:T:3:N:0:O:8	.	0,36,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:97:G:0:T:2:N:0:O:2	.	0,66,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:116:C:0:G:3:T:0:N:0:O:1	.	3,43,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28796	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:89:T:0:N:0:O:2	.	2,45,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:63:G:0:T:2:N:0:O:1	.	0,52,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	102	.	20	.	1.0	.	A:102:C:0:G:0:T:0:N:0:O:0	.	55,55,47,47	476.919	2182.8	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	81	.	20	.	1.0	.	A:81:C:0:G:0:T:0:N:0:O:0	.	40,40,41,41	476.919	2182.8	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	72	.	20	.	1.0	.	A:0:C:72:G:0:T:0:N:0:O:0	.	30,30,42,42	476.919	2182.8	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:4:C:0:G:69:T:0:N:0:O:2	.	4,18,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:41:G:0:T:1:N:0:O:3	.	0,24,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0223463687150838	.	A:0:C:171:G:0:T:4:N:0:O:4	.	0,158,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,3,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29080	T	C	T	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.039735099337748346	.	A:0:C:6:G:0:T:145:N:0:O:0	.	0,74,6,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29131	T	G	T	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02702702702702703	.	A:0:C:0:G:4:T:122:N:0:O:22	.	1,66,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.018518518518518517	.	A:0:C:125:G:0:T:3:N:0:O:34	.	2,93,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:73:C:0:G:2:T:0:N:0:O:1	.	0,42,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:69:C:0:G:2:T:0:N:0:O:0	.	2,31,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:3:C:0:G:138:T:0:N:0:O:7	.	3,71,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:75:C:0:G:4:T:0:N:0:O:1	.	4,12,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:80:T:0:N:0:O:4	.	4,15,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.056	.	A:115:C:7:G:1:T:0:N:0:O:2	.	0,71,7,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00143	artic-pipeline	NB06	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	345	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	3037	C	N	N	19	ambiguous base at key position	Pass	.	False	False	14	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	6696	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	58	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00143	artic-pipeline	NB06	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	7	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	11	.	20	.	1.0	.	A:0:C:0:G:0:T:11:N:0:O:0	.	2,2,9,9	69.237	1124.7	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	313	C	T	T	1	near depth threshold	Alarm	False	True	True	8	.	20	.	1.0	.	A:0:C:0:G:0:T:8:N:0:O:0	.	2,2,6,6	140.0	1982.3	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	491	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:139:T:0:N:0:O:3	.	3,36,0,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.08860759493670886	.	A:0:C:65:G:1:T:7:N:0:O:6	.	0,44,7,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.014925373134328358	.	A:2:C:0:G:97:T:0:N:0:O:35	.	0,35,2,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:65:C:0:G:2:T:0:N:0:O:2	.	0,32,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1349	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:117:G:0:T:0:N:0:O:10	.	0,65,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:0:T:3:N:0:O:0	.	3,45,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:3:T:0:N:0:O:0	.	3,49,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:103:G:0:T:4:N:0:O:2	.	0,71,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:93:C:0:G:3:T:0:N:0:O:3	.	1,30,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:0:G:125:T:0:N:0:O:21	.	1,50,2,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:2:T:0:N:0:O:0	.	1,12,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.03870967741935484	.	A:6:C:0:G:149:T:0:N:0:O:0	.	6,90,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2194	A	G	A	16	ignore low frequency variant	Pass	False	False	True	249	.	20	.	0.024096385542168676	.	A:228:C:0:G:6:T:0:N:0:O:15	.	6,101,0,148	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.1339712918660287	.	A:28:C:0:G:177:T:0:N:0:O:4	.	28,79,0,130	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	2202	G	T	G	16	ignore low frequency variant	Pass	False	False	True	259	.	20	.	0.023166023166023165	.	A:1:C:0:G:249:T:6:N:0:O:3	.	6,134,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2898	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,13,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2899	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,13,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:24:C:1:G:0:T:0:N:0:O:1	.	0,6,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:33:G:0:T:1:N:0:O:4	.	0,8,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2926	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:36:N:0:O:0	.	0,12,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2928	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,9,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2942	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:37:G:0:T:1:N:0:O:1	.	0,11,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	2945	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:38:T:0:N:0:O:0	.	0,13,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	2981	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,9,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	2995	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:42:T:0:N:0:O:2	.	1,15,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3020	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:0:T:1:N:0:O:0	.	1,13,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3021	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:1:T:0:N:0:O:0	.	1,14,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3037	C	T	N	2	allele in negative control	Alarm	True	False	False	27	.	20	.	0.8888888888888888	.	A:0:C:0:G:0:T:24:N:0:O:3	.	8,11,16,16	194.672	334.8	.	.	allele in NTC	.	.	.	.	ambig in key position	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	3049	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:39:N:0:O:1	.	0,15,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3062	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	1,5,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3063	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:26:C:0:G:1:T:0:N:0:O:1	.	1,6,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3088	T	G	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:0:G:1:T:34:N:0:O:1	.	0,9,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	1,10,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3129	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,9,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,60,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:0:T:2:N:0:O:2	.	1,38,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:73:C:0:G:2:T:0:N:0:O:2	.	1,22,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.024390243902439025	.	A:4:C:0:G:159:T:0:N:0:O:1	.	4,70,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3807	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:129:C:0:G:0:T:3:N:0:O:4	.	0,77,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:1:C:0:G:2:T:85:N:0:O:18	.	0,44,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:5:C:0:G:92:T:0:N:0:O:4	.	0,50,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,71,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.07692307692307693	.	A:0:C:94:G:0:T:8:N:0:O:2	.	0,71,8,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	4170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:74:G:0:T:2:N:0:O:0	.	0,23,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:1:C:48:G:0:T:1:N:0:O:3	.	0,33,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:0:T:109:N:0:O:30	.	0,50,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:75:C:0:G:2:T:0:N:0:O:0	.	1,28,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:2:G:0:T:66:N:0:O:0	.	0,42,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	298	.	20	.	0.030201342281879196	.	A:0:C:0:G:274:T:9:N:0:O:15	.	0,197,9,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	259	.	20	.	0.03088803088803089	.	A:1:C:0:G:228:T:8:N:0:O:22	.	0,180,8,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:4:C:0:G:195:T:0:N:0:O:1	.	0,157,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.04046242774566474	.	A:158:C:0:G:0:T:7:N:0:O:8	.	0,104,7,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4747	T	A	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:0:T:38:N:0:O:3	.	0,20,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4794	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:35:G:0:T:1:N:0:O:1	.	1,18,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4837	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:2:G:0:T:43:N:0:O:0	.	0,26,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4841	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:30:T:0:N:0:O:2	.	1,11,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:36:G:0:T:1:N:0:O:1	.	0,28,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:44:N:0:O:1	.	0,28,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:0:G:40:T:1:N:0:O:0	.	1,19,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4885	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:41:N:0:O:2	.	0,20,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4887	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:42:G:0:T:1:N:0:O:1	.	0,19,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4912	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,20,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:0:C:0:G:1:T:46:N:0:O:7	.	0,29,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	5100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:79:G:0:T:0:N:0:O:5	.	0,79,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:97:T:2:N:0:O:3	.	2,43,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:73:T:0:N:0:O:1	.	2,15,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	5508	T	G	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:0:G:3:T:134:N:0:O:0	.	0,75,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	5526	C	T	T	14	new position at high frequency	Pass	False	True	True	91	.	20	.	0.9560439560439561	.	A:0:C:1:G:0:T:87:N:0:O:3	.	49,52,38,39	205.463	1201.6	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:102:T:0:N:0:O:1	.	4,48,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:97:C:0:G:0:T:2:N:0:O:6	.	0,63,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.14666666666666667	.	A:0:C:63:G:0:T:11:N:0:O:1	.	0,54,11,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:0:C:186:G:0:T:4:N:0:O:2	.	0,147,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.033816425120772944	.	A:0:C:196:G:0:T:7:N:0:O:4	.	0,140,7,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.033112582781456956	.	A:5:C:0:G:133:T:0:N:0:O:13	.	5,75,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	6317	C	A	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.02577319587628866	.	A:5:C:187:G:0:T:1:N:0:O:1	.	0,133,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6534	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,23,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6575	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:27:C:0:G:2:T:0:N:0:O:0	.	2,16,0,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6619	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:0:G:1:T:34:N:0:O:0	.	0,23,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	1,15,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	6654	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,18,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:1:T:27:N:0:O:3	.	0,19,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6682	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:19:N:0:O:1	.	0,13,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,19,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,18,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,19,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:21:T:0:N:0:O:2	.	1,11,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:115:G:0:T:3:N:0:O:12	.	0,91,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6928	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,51,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	1,28,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:74:C:0:G:0:T:6:N:0:O:0	.	1,63,5,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	7156	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:102:N:0:O:0	.	0,61,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.10752688172043011	.	A:10:C:0:G:83:T:0:N:0:O:0	.	10,28,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:87:G:0:T:2:N:0:O:16	.	0,87,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	7669	A	G	A	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.022988505747126436	.	A:169:C:0:G:4:T:0:N:0:O:1	.	4,108,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	7678	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,14,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:49:C:0:G:2:T:0:N:0:O:0	.	2,21,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,19,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.021929824561403508	.	A:0:C:5:G:0:T:223:N:0:O:0	.	1,127,4,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	8143	A	G	A	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:198:C:0:G:5:T:0:N:0:O:3	.	1,101,4,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	8182	A	G	A	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.02100840336134454	.	A:221:C:0:G:5:T:0:N:0:O:12	.	5,105,0,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.12048192771084337	.	A:10:C:1:G:70:T:0:N:0:O:2	.	10,13,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	8909	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:97:N:0:O:1	.	2,46,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	8910	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:94:N:0:O:2	.	2,47,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:0:T:94:N:0:O:7	.	4,54,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:94:G:0:T:5:N:0:O:0	.	0,63,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,60,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:83:G:0:T:2:N:0:O:12	.	0,67,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:4:G:0:T:123:N:0:O:0	.	1,68,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	9886	C	A	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:76:G:0:T:0:N:0:O:7	.	0,13,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:72:T:0:N:0:O:1	.	2,14,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:92:G:0:T:2:N:0:O:8	.	2,27,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:3:G:0:T:77:N:0:O:1	.	0,58,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,31,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:95:N:0:O:4	.	0,50,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:0:C:119:G:0:T:5:N:0:O:6	.	0,74,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	10475	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:131:G:1:T:3:N:0:O:7	.	0,69,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:123:C:1:G:3:T:0:N:0:O:10	.	3,52,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10529	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:89:N:0:O:1	.	2,54,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:2:T:0:N:0:O:1	.	2,46,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:116:G:0:T:0:N:0:O:14	.	3,79,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	11186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:5:G:0:T:101:N:0:O:0	.	0,67,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	11576	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:1:N:0:O:0	.	2,50,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	11577	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:116:N:0:O:0	.	3,59,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:91:G:0:T:4:N:0:O:0	.	0,70,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.018691588785046728	.	A:0:C:0:G:136:T:4:N:0:O:74	.	1,79,3,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:60:C:0:G:2:T:1:N:0:O:0	.	1,40,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:91:G:0:T:3:N:0:O:21	.	0,77,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:1:C:92:G:1:T:2:N:0:O:4	.	2,35,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12447	T	G	T	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.04680851063829787	.	A:0:C:0:G:11:T:222:N:0:O:2	.	7,95,4,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12448	A	C	A	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.0425531914893617	.	A:224:C:10:G:0:T:0:N:0:O:1	.	6,102,4,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.04854368932038835	.	A:0:C:10:G:0:T:195:N:0:O:1	.	6,84,4,122	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12451	A	C	A	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.046511627906976744	.	A:194:C:10:G:2:T:0:N:0:O:9	.	6,88,4,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12452	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.05154639175257732	.	A:1:C:176:G:0:T:10:N:0:O:7	.	6,109,4,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:3:G:0:T:69:N:0:O:8	.	0,17,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.11688311688311688	.	A:0:C:66:G:0:T:9:N:0:O:2	.	0,44,9,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:2:T:0:N:0:O:3	.	2,27,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:73:G:0:T:2:N:0:O:2	.	0,49,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13303	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,41,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13426	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,33,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.12121212121212122	.	A:0:C:58:G:0:T:8:N:0:O:0	.	0,56,8,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13482	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:0:G:2:T:0:N:0:O:1	.	0,53,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:69:C:0:G:2:T:0:N:0:O:2	.	0,48,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0707070707070707	.	A:7:C:0:G:86:T:0:N:0:O:6	.	7,32,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:1:N:0:O:0	.	2,29,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:95:N:0:O:4	.	0,45,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:68:G:0:T:2:N:0:O:2	.	1,27,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:0:T:107:N:0:O:21	.	2,64,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:109:T:0:N:0:O:3	.	3,26,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,24,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:73:C:0:G:2:T:0:N:0:O:2	.	0,26,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,45,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:105:C:0:G:3:T:0:N:0:O:6	.	3,52,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,38,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	59	.	20	.	1.0	.	A:0:C:0:G:0:T:59:N:0:O:0	.	26,26,33,33	470.307	1180.3	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	14422	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:125:G:0:T:3:N:0:O:0	.	1,71,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,35,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.05454545454545454	.	A:6:C:0:G:103:T:0:N:0:O:1	.	6,36,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,33,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14717	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:0:T:2:N:0:O:2	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	0,18,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14906	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:0:T:1:N:0:O:0	.	0,16,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14907	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,18,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,22,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14969	G	T	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:26:T:1:N:0:O:0	.	1,17,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14970	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:1:T:23:N:0:O:4	.	1,22,0,7	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14971	A	T	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:0:T:1:N:0:O:0	.	1,14,0,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14975	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:29:G:0:T:1:N:0:O:1	.	0,25,1,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14994	A	C	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:1:G:0:T:0:N:0:O:0	.	0,22,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	14996	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:36:N:0:O:0	.	0,22,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15004	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:39:T:0:N:0:O:0	.	1,24,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15011	A	C	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:1:G:0:T:0:N:0:O:0	.	1,21,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15043	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	0,19,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15044	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:35:N:0:O:0	.	0,21,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15045	C	G	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:1:T:0:N:0:O:0	.	0,21,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15058	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:33:C:0:G:1:T:0:N:0:O:3	.	1,18,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	1,14,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15091	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:1:T:0:N:0:O:0	.	1,18,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15092	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:1:T:0:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15113	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	1,21,0,7	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15114	T	A	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:0:T:31:N:0:O:0	.	1,22,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15150	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	1,23,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15158	A	C	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:1:G:0:T:0:N:0:O:0	.	0,19,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:30:N:0:O:3	.	0,26,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15196	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:146:C:0:G:0:T:3:N:0:O:1	.	3,68,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:5:G:0:T:114:N:0:O:1	.	0,66,5,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:107:T:0:N:0:O:0	.	4,55,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:136:T:0:N:0:O:1	.	3,66,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:1:C:2:G:0:T:44:N:0:O:34	.	1,67,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	15952	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	63	.	20	.	0.25396825396825395	.	A:0:C:46:G:0:T:16:N:0:O:1	.	0,38,16,25	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:108:G:0:T:3:N:0:O:1	.	0,79,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	16179	A	C	A	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:194:C:4:G:0:T:0:N:0:O:2	.	4,93,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16204	G	C	G	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:2:G:58:T:0:N:0:O:0	.	2,22,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,19,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16247	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:47:G:0:T:1:N:0:O:0	.	0,19,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16257	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	1,15,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16262	A	C	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:1:G:0:T:0:N:0:O:0	.	0,23,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16386	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	0,22,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16424	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,15,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16443	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:50:G:0:T:2:N:0:O:5	.	0,25,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:108:G:0:T:3:N:0:O:1	.	0,55,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:111:C:0:G:3:T:0:N:0:O:3	.	3,27,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.06666666666666667	.	A:0:C:68:G:0:T:5:N:0:O:2	.	0,44,5,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:81:T:2:N:0:O:4	.	2,23,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.056074766355140186	.	A:0:C:0:G:6:T:96:N:0:O:5	.	0,60,6,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.01935483870967742	.	A:3:C:0:G:123:T:0:N:0:O:29	.	0,71,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	16982	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:98:N:0:O:0	.	2,24,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:2:G:0:T:0:N:0:O:0	.	2,34,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:95:C:0:G:3:T:0:N:0:O:1	.	3,49,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17304	C	T	T	12	misc mixed variant	Check	False	True	True	118	.	20	.	0.288135593220339	.	A:0:C:0:G:0:T:34:N:0:O:84	.	11,95,23,23	148.639	1602.3	.	.	.	.	mixed position	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	17338	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:97:T:2:N:0:O:0	.	2,52,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:2:G:0:T:0:N:0:O:1	.	2,36,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17449	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:0:T:85:N:0:O:0	.	2,21,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:82:G:0:T:4:N:0:O:2	.	0,50,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:0:C:75:G:0:T:5:N:0:O:0	.	0,32,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:92:C:0:G:0:T:2:N:0:O:3	.	0,47,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17667	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:91:T:1:N:0:O:0	.	4,38,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.02857142857142857	.	A:0:C:204:G:0:T:6:N:0:O:0	.	2,91,4,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.08021390374331551	.	A:0:C:160:G:0:T:15:N:0:O:12	.	0,92,15,95	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17753	G	T	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:0:G:141:T:3:N:0:O:2	.	0,59,3,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.14925373134328357	.	A:1:C:56:G:0:T:10:N:0:O:0	.	0,37,10,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.08737864077669903	.	A:84:C:0:G:0:T:9:N:0:O:10	.	0,35,9,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:85:T:0:N:0:O:0	.	0,54,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:110:G:0:T:3:N:0:O:2	.	0,50,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:0:T:105:N:0:O:23	.	1,50,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.025	.	A:0:C:155:G:0:T:4:N:0:O:1	.	0,83,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:112:N:0:O:0	.	3,32,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	2,12,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:87:N:0:O:1	.	1,41,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:78:G:0:T:2:N:0:O:1	.	0,26,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,30,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.028735632183908046	.	A:0:C:167:G:0:T:5:N:0:O:2	.	0,69,5,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:4:G:0:T:126:N:0:O:1	.	0,69,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:5:C:0:G:0:T:148:N:0:O:36	.	0,78,5,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04065040650406504	.	A:117:C:0:G:0:T:5:N:0:O:1	.	0,63,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:5:G:0:T:89:N:0:O:2	.	0,57,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:92:N:0:O:0	.	2,48,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20543	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,8,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20544	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,9,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:23:T:0:N:0:O:0	.	0,7,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20645	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:20:C:1:G:0:T:0:N:0:O:1	.	1,4,0,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20648	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:22:G:0:T:0:N:0:O:3	.	1,8,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20747	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:30:C:0:G:1:T:0:N:0:O:1	.	0,11,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:116:C:0:G:3:T:0:N:0:O:4	.	3,36,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	20940	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:98:T:2:N:0:O:2	.	2,45,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:0:C:0:G:4:T:73:N:0:O:0	.	4,10,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21409	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:64:G:0:T:2:N:0:O:0	.	2,58,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:95:G:0:T:4:N:0:O:0	.	0,64,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:99:C:0:G:4:T:0:N:0:O:1	.	4,29,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.03496503496503497	.	A:5:C:0:G:136:T:0:N:0:O:2	.	5,69,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:47:G:0:T:2:N:0:O:4	.	2,18,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21781	C	A	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:65:G:0:T:0:N:0:O:0	.	1,36,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:56:C:0:G:2:T:0:N:0:O:0	.	2,23,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21873	G	T	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:0:G:63:T:2:N:0:O:0	.	0,36,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:53:C:0:G:2:T:0:N:0:O:0	.	2,15,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.03333333333333333	.	A:145:C:0:G:5:T:0:N:0:O:0	.	5,73,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	0,37,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.02564102564102564	.	A:152:C:0:G:0:T:4:N:0:O:0	.	3,94,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:0:G:4:T:112:N:0:O:0	.	4,51,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:0:C:162:G:0:T:4:N:0:O:3	.	0,109,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:87:G:0:T:2:N:0:O:4	.	0,65,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22563	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.0	.	A:183:C:0:G:0:T:0:N:0:O:1	.	0,66,0,118	15.449	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:111:N:0:O:0	.	0,56,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22599	G	C	G	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.0	.	A:0:C:0:G:173:T:0:N:0:O:2	.	0,47,0,128	2.16	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:0:G:105:T:5:N:0:O:1	.	4,52,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	22956	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:102:C:0:G:0:T:4:N:0:O:2	.	3,52,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23088	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:91:T:0:N:0:O:12	.	2,33,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23263	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:110:C:0:G:4:T:0:N:0:O:1	.	4,50,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:122:T:0:N:0:O:1	.	3,56,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	138	.	20	.	0.9130434782608695	.	A:1:C:0:G:126:T:0:N:0:O:11	.	70,82,56,56	266.684	1748.9	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	23532	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:1:T:0:N:0:O:0	.	1,7,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23546	T	A	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:0:T:29:N:0:O:0	.	1,17,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23555	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,20,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23578	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,15,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23623	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	1,12,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23630	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:29:G:0:T:1:N:0:O:1	.	0,18,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23668	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	0,13,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23674	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:1:T:0:N:0:O:0	.	1,14,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:23:G:0:T:1:N:0:O:1	.	0,14,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	23715	T	A	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:0:T:32:N:0:O:0	.	1,18,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23726	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,14,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23743	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,15,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23751	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:29:G:0:T:1:N:0:O:1	.	0,19,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,14,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23758	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:22:G:0:T:1:N:0:O:2	.	0,14,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.13043478260869565	.	A:0:C:98:G:0:T:15:N:0:O:2	.	0,73,15,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:98:G:2:T:3:N:0:O:8	.	1,53,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:0:T:77:N:0:O:1	.	3,25,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.04918032786885246	.	A:6:C:0:G:115:T:0:N:0:O:1	.	6,26,0,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24086	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:121:T:3:N:0:O:0	.	0,60,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.08860759493670886	.	A:0:C:72:G:0:T:7:N:0:O:0	.	0,57,7,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24199	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,32,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,17,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:86:T:0:N:0:O:5	.	3,29,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:97:N:0:O:1	.	3,38,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24422	C	A	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.031746031746031744	.	A:6:C:168:G:0:T:1:N:0:O:14	.	5,95,1,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:90:T:0:N:0:O:2	.	0,53,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:96:N:0:O:2	.	0,62,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25160	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:124:G:0:T:3:N:0:O:0	.	0,87,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,56,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:96:C:0:G:3:T:0:N:0:O:3	.	3,40,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:0:G:3:T:87:N:0:O:0	.	3,29,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:1:C:0:G:81:T:2:N:0:O:31	.	2,79,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:0:G:2:T:70:N:0:O:5	.	2,36,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:91:G:0:T:3:N:0:O:14	.	2,63,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:68:T:0:N:0:O:5	.	2,17,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:74:G:0:T:2:N:0:O:8	.	2,54,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.03546099290780142	.	A:5:C:95:G:0:T:0:N:0:O:41	.	4,65,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:71:C:4:G:0:T:0:N:0:O:3	.	1,52,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:108:G:0:T:3:N:0:O:0	.	1,65,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:95:G:0:T:4:N:0:O:2	.	1,58,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,64,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:78:C:0:G:0:T:2:N:0:O:2	.	0,67,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:76:N:0:O:0	.	0,57,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,31,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25888	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:118:N:0:O:1	.	0,62,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	3,36,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26058	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.07207207207207207	.	A:0:C:102:G:0:T:8:N:0:O:1	.	4,66,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	26206	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:0:G:3:T:0:N:0:O:1	.	3,59,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,47,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,62,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26413	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:1:C:2:G:0:T:96:N:0:O:0	.	1,61,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:113:C:0:G:3:T:0:N:0:O:3	.	3,52,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.056910569105691054	.	A:7:C:0:G:114:T:0:N:0:O:2	.	7,52,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:190:G:0:T:5:N:0:O:0	.	0,147,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26593	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,37,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:80:N:0:O:1	.	1,24,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.07954545454545454	.	A:7:C:0:G:81:T:0:N:0:O:0	.	7,15,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26731	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,61,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:83:G:0:T:3:N:0:O:1	.	0,56,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:1:G:130:T:0:N:0:O:1	.	3,54,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0859375	.	A:0:C:115:G:0:T:11:N:0:O:2	.	0,100,11,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27154	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:137:G:0:T:3:N:0:O:2	.	3,58,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:80:N:0:O:1	.	0,50,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:94:N:0:O:0	.	0,51,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:114:G:0:T:3:N:0:O:10	.	0,59,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	1,21,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:85:G:0:T:2:N:0:O:10	.	0,69,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,45,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:121:T:0:N:0:O:5	.	3,75,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:49:G:0:T:1:N:0:O:1	.	0,29,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27953	T	A	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:1:C:0:G:0:T:49:N:0:O:2	.	0,30,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:1:C:48:G:0:T:0:N:0:O:3	.	0,33,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	27989	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:57:C:0:G:2:T:0:N:0:O:0	.	0,26,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:0:T:71:N:0:O:3	.	0,38,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:67:G:0:T:2:N:0:O:0	.	0,53,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:90:C:0:G:1:T:2:N:0:O:6	.	2,29,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:75:G:0:T:2:N:0:O:2	.	0,38,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:87:G:0:T:4:N:0:O:1	.	0,45,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.08139534883720931	.	A:0:C:71:G:0:T:7:N:0:O:8	.	0,29,7,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:51:G:0:T:2:N:0:O:0	.	0,24,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	121	.	20	.	0.9917355371900827	.	A:120:C:0:G:0:T:0:N:0:O:1	.	24,25,96,96	336.684	2390.9	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	112	.	20	.	0.9910714285714286	.	A:111:C:0:G:0:T:0:N:0:O:1	.	18,19,93,93	336.684	2390.9	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	105	.	20	.	0.9904761904761905	.	A:0:C:104:G:0:T:0:N:0:O:1	.	12,13,92,92	336.684	2390.9	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	28889	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:0:T:71:N:0:O:1	.	3,16,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:96:N:0:O:2	.	0,25,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:79:G:0:T:2:N:0:O:0	.	0,20,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	28930	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:94:N:0:O:1	.	0,26,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:39:G:0:T:1:N:0:O:3	.	0,9,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	0,21,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:128:G:0:T:3:N:0:O:4	.	0,92,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29132	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:92:T:2:N:0:O:0	.	1,44,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:2:T:0:N:0:O:0	.	0,37,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:120:G:0:T:0:N:0:O:2	.	3,51,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:0:G:3:T:0:N:0:O:1	.	0,52,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0875	.	A:73:C:0:G:7:T:0:N:0:O:0	.	7,16,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.07216494845360824	.	A:7:C:0:G:86:T:0:N:0:O:4	.	7,24,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:131:C:3:G:0:T:0:N:0:O:5	.	0,90,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00145	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00145	artic-pipeline	NB08	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	9	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	157	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:20:G:0:T:1:N:0:O:1	.	0,0,1,22	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	22	.	20	.	0.9545454545454546	.	A:0:C:0:G:0:T:21:N:0:O:1	.	2,3,19,19	70.0	1134.9	.	depth near threshold	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	2,27,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:116:C:0:G:3:T:0:N:0:O:1	.	3,34,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	597	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:115:N:0:O:2	.	0,63,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	745	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:134:G:0:T:3:N:0:O:0	.	0,63,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.07954545454545454	.	A:0:C:69:G:0:T:7:N:0:O:12	.	1,42,6,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	1,33,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:101:T:0:N:0:O:34	.	1,49,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,60,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1203	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,36,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:0:C:58:G:0:T:3:N:0:O:7	.	1,35,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:4:G:0:T:67:N:0:O:0	.	0,34,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:99:G:0:T:4:N:0:O:2	.	0,44,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	1547	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:98:C:0:G:2:T:0:N:0:O:4	.	2,28,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	1616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.01968503937007874	.	A:0:C:234:G:0:T:5:N:0:O:15	.	0,115,5,139	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:82:C:0:G:3:T:0:N:0:O:2	.	3,37,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.047619047619047616	.	A:6:C:0:G:119:T:0:N:0:O:1	.	6,68,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.020942408376963352	.	A:0:C:187:G:0:T:4:N:0:O:0	.	4,74,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.10119047619047619	.	A:17:C:0:G:150:T:0:N:0:O:1	.	17,55,0,113	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	2280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:43:C:0:G:1:T:0:N:0:O:4	.	1,29,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2306	C	A	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:45:G:0:T:0:N:0:O:2	.	1,32,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:0:T:36:N:0:O:0	.	1,25,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2381	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:42:T:0:N:0:O:2	.	1,21,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2398	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:42:T:0:N:0:O:0	.	1,11,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2438	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.06	.	A:3:C:0:G:46:T:0:N:0:O:1	.	3,15,0,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2447	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:43:T:0:N:0:O:0	.	0,13,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	2493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:46:C:0:G:1:T:0:N:0:O:9	.	0,19,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	0,10,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2495	G	A	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:49:T:0:N:0:O:1	.	1,22,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2557	A	G	A	16	ignore low frequency variant	Pass	False	False	True	282	.	20	.	0.02127659574468085	.	A:275:C:0:G:6:T:0:N:0:O:1	.	6,111,0,171	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.023474178403755867	.	A:207:C:5:G:0:T:0:N:0:O:1	.	5,113,0,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.03626943005181347	.	A:186:C:0:G:7:T:0:N:0:O:0	.	7,76,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.019704433497536946	.	A:194:C:0:G:4:T:0:N:0:O:5	.	4,90,0,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:0:G:52:T:0:N:0:O:0	.	0,25,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:1:G:0:T:0:N:0:O:0	.	0,14,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:0:C:2:G:0:T:47:N:0:O:0	.	2,16,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	2984	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	1,17,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	61	.	20	.	0.7213114754098361	.	A:0:C:0:G:0:T:44:N:0:O:17	.	17,34,27,27	50.545	776.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	3074	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:2:C:0:G:61:T:0:N:0:O:0	.	0,27,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:73:G:0:T:0:N:0:O:2	.	0,28,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.05263157894736842	.	A:0:C:0:G:49:T:3:N:0:O:5	.	0,26,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:104:C:0:G:3:T:0:N:0:O:1	.	3,18,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:48:C:0:G:2:T:0:N:0:O:1	.	2,15,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3546	A	C	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:1:G:0:T:0:N:0:O:0	.	0,8,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3733	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:20:N:0:O:0	.	0,9,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	0,9,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:1:C:88:G:0:T:3:N:0:O:0	.	0,68,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:4:G:0:T:115:N:0:O:0	.	0,62,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:3:G:0:T:136:N:0:O:4	.	0,70,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	3994	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:0:G:139:T:3:N:0:O:0	.	0,69,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:55:G:0:T:2:N:0:O:6	.	0,37,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:87:C:0:G:2:T:0:N:0:O:4	.	1,36,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	300	.	20	.	0.02	.	A:0:C:0:G:279:T:6:N:0:O:15	.	0,194,6,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	281	.	20	.	0.028469750889679714	.	A:0:C:0:G:236:T:8:N:0:O:37	.	0,212,8,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.02066115702479339	.	A:5:C:0:G:231:T:0:N:0:O:6	.	0,122,5,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.028089887640449437	.	A:1:C:163:G:0:T:5:N:0:O:9	.	0,81,5,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4597	T	C	T	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.021645021645021644	.	A:0:C:5:G:0:T:225:N:0:O:1	.	0,133,5,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:3:T:100:N:0:O:7	.	0,57,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	4943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:88:G:0:T:2:N:0:O:4	.	0,63,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:77:C:0:G:0:T:3:N:0:O:0	.	3,31,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:79:G:0:T:3:N:0:O:0	.	3,34,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,66,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:80:T:0:N:0:O:0	.	2,26,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	5448	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:3:G:0:T:129:N:0:O:0	.	0,78,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5532	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:121:T:0:N:0:O:0	.	1,81,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:0:C:4:G:0:T:75:N:0:O:0	.	0,39,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,48,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.19480519480519481	.	A:0:C:59:G:0:T:15:N:0:O:3	.	0,54,15,23	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6109	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:20:T:0:N:0:O:2	.	1,7,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6145	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	1,13,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.03205128205128205	.	A:0:C:150:G:0:T:5:N:0:O:1	.	0,98,5,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:139:G:0:T:3:N:0:O:1	.	0,102,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	1,27,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6565	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:46:C:0:G:1:T:0:N:0:O:2	.	1,25,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:0:C:48:G:0:T:3:N:0:O:1	.	0,30,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:0:G:2:T:52:N:0:O:4	.	0,29,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:0:C:2:G:0:T:42:N:0:O:0	.	0,24,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:48:G:0:T:1:N:0:O:0	.	0,32,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6738	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:43:G:0:T:1:N:0:O:1	.	1,15,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:2:C:0:G:52:T:0:N:0:O:0	.	2,22,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:137:C:0:G:3:T:1:N:0:O:6	.	3,57,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:94:T:0:N:0:O:1	.	3,31,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:68:C:0:G:0:T:4:N:0:O:0	.	0,60,4,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:92:C:0:G:3:T:0:N:0:O:1	.	3,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:84:T:0:N:0:O:2	.	2,22,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:72:G:0:T:2:N:0:O:20	.	0,76,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7674	C	A	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:1:C:48:G:0:T:0:N:0:O:4	.	0,40,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:0:G:0:T:2:N:0:O:0	.	2,39,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:0:G:2:T:0:N:0:O:1	.	2,54,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7811	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	1,58,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:66:C:0:G:4:T:0:N:0:O:1	.	4,28,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7842	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7873	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:0:G:98:T:2:N:0:O:6	.	2,64,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7909	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:92:C:0:G:2:T:0:N:0:O:7	.	2,58,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	2,46,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	2,40,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:82:C:0:G:2:T:0:N:0:O:4	.	2,42,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8062	A	G	A	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:181:C:0:G:4:T:0:N:0:O:1	.	4,105,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:140:C:3:G:0:T:1:N:0:O:0	.	0,99,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8361	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:0:T:76:N:0:O:0	.	2,47,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	1,18,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:46:C:0:G:1:T:0:N:0:O:2	.	1,29,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:3:G:0:T:63:N:0:O:0	.	0,45,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:1:G:83:T:0:N:0:O:0	.	2,12,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,40,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:5:C:0:G:0:T:96:N:0:O:11	.	4,60,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9045	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:97:T:3:N:0:O:0	.	3,58,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:108:T:0:N:0:O:0	.	4,56,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9172	T	C	C	17	accept high frequency variant	Pass	False	True	True	116	.	20	.	0.9913793103448276	.	A:0:C:115:G:0:T:0:N:0:O:1	.	65,66,50,50	201.455	1491.2	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	9186	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:0:G:116:T:0:N:0:O:1	.	4,54,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9199	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,56,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:93:G:0:T:4:N:0:O:1	.	0,59,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	1,51,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	9794	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:111:T:0:N:0:O:10	.	3,76,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9842	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:116:N:0:O:0	.	0,66,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9885	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:91:C:0:G:2:T:1:N:0:O:2	.	2,34,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:2:C:0:G:62:T:0:N:0:O:1	.	2,19,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:79:G:0:T:2:N:0:O:13	.	2,34,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,35,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:77:N:0:O:9	.	0,47,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:109:G:0:T:4:N:0:O:3	.	0,80,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	10449	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	2,34,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	243	.	20	.	0.0205761316872428	.	A:0:C:5:G:0:T:236:N:0:O:2	.	0,146,5,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:83:N:0:O:5	.	0,64,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10803	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:105:N:0:O:4	.	0,50,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10810	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,52,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	1,56,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:89:N:0:O:3	.	0,51,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	10948	A	G	G	14	new position at high frequency	Pass	False	True	True	92	.	20	.	0.9239130434782609	.	A:1:C:0:G:85:T:0:N:0:O:6	.	46,53,39,39	271.455	1109.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11010	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:117:T:0:N:0:O:0	.	3,47,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11051	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:125:G:0:T:0:N:0:O:5	.	3,83,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11053	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:119:T:0:N:0:O:3	.	3,72,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11081	T	G	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.1	.	A:0:C:0:G:2:T:18:N:0:O:0	.	1,15,1,5	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11181	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	2,54,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.08035714285714286	.	A:0:C:101:G:0:T:9:N:0:O:2	.	0,91,9,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	1,70,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:89:C:0:G:0:T:3:N:0:O:0	.	3,60,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11815	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:2:G:0:T:0:N:0:O:1	.	0,64,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	11817	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:95:G:0:T:2:N:0:O:5	.	0,64,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12039	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:90:N:0:O:2	.	0,33,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,41,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:74:G:0:T:2:N:0:O:14	.	0,57,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02358490566037736	.	A:0:C:204:G:0:T:5:N:0:O:3	.	0,101,5,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:183:C:0:G:4:T:0:N:0:O:1	.	3,58,1,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:68:T:0:N:0:O:24	.	0,69,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12369	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:94:G:0:T:4:N:0:O:1	.	0,53,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:106:T:0:N:0:O:6	.	3,42,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:0:T:2:N:0:O:1	.	2,36,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:0:C:78:G:0:T:6:N:0:O:0	.	0,50,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	1,30,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:92:G:0:T:2:N:0:O:7	.	0,28,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:98:T:0:N:0:O:2	.	3,26,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:106:C:0:G:3:T:0:N:0:O:3	.	3,25,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13194	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.03731343283582089	.	A:0:C:5:G:0:T:129:N:0:O:0	.	0,65,5,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:76:G:1:T:2:N:0:O:6	.	0,52,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13426	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:77:G:0:T:2:N:0:O:1	.	0,36,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.09803921568627451	.	A:0:C:46:G:0:T:5:N:0:O:0	.	0,42,5,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:75:T:0:N:0:O:6	.	2,39,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.09259259259259259	.	A:10:C:0:G:90:T:0:N:0:O:8	.	10,38,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:98:T:0:N:0:O:1	.	4,41,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:91:C:0:G:5:T:0:N:0:O:1	.	0,46,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,42,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	79	.	20	.	0.9873417721518988	.	A:0:C:0:G:0:T:78:N:0:O:1	.	41,42,37,37	415.463	1159.9	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	14547	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:101:T:0:N:0:O:0	.	3,51,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	3,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:83:G:0:T:3:N:0:O:2	.	0,61,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	14970	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:2:C:0:G:3:T:82:N:0:O:15	.	2,59,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:68:C:0:G:0:T:3:N:0:O:2	.	2,34,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:69:G:0:T:2:N:0:O:11	.	0,45,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:3:G:0:T:64:N:0:O:3	.	0,58,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	15168	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:1:G:97:T:0:N:0:O:2	.	1,49,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	15432	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:86:N:0:O:3	.	1,40,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	15490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:4:C:0:G:116:T:0:N:0:O:2	.	4,44,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	3,63,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	15576	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:122:N:0:O:1	.	0,84,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	15951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:84:G:0:T:2:N:0:O:5	.	2,37,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.09090909090909091	.	A:0:C:50:G:0:T:5:N:0:O:0	.	0,40,5,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	16093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	2,47,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:104:T:0:N:0:O:2	.	3,41,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16107	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:131:C:0:G:3:T:0:N:0:O:0	.	3,67,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:0:C:111:G:0:T:6:N:0:O:2	.	0,82,6,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	16215	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	1,45,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:77:G:0:T:3:N:0:O:1	.	0,59,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:103:G:0:T:4:N:0:O:0	.	0,55,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:98:T:0:N:0:O:3	.	3,13,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.08653846153846154	.	A:0:C:0:G:9:T:92:N:0:O:3	.	0,45,9,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	1,31,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.022321428571428572	.	A:205:C:0:G:5:T:0:N:0:O:14	.	5,77,0,147	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.027624309392265192	.	A:5:C:0:G:167:T:0:N:0:O:9	.	5,31,0,150	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:0:T:70:N:0:O:1	.	2,20,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:82:C:0:G:4:T:0:N:0:O:0	.	4,41,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:0:C:77:G:0:T:4:N:0:O:1	.	0,53,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:108:T:0:N:0:O:0	.	3,31,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:85:G:0:T:2:N:0:O:0	.	0,49,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:71:G:0:T:3:N:0:O:2	.	0,28,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:101:C:0:G:0:T:3:N:0:O:7	.	0,61,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.03608247422680412	.	A:0:C:176:G:0:T:7:N:0:O:11	.	0,102,7,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.07407407407407407	.	A:0:C:49:G:1:T:4:N:0:O:0	.	0,31,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:68:C:0:G:0:T:4:N:0:O:11	.	0,28,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	0,63,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	1,27,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	2,47,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:98:C:0:G:0:T:4:N:0:O:0	.	4,60,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18267	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:64:G:0:T:2:N:0:O:0	.	0,31,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:97:N:0:O:0	.	2,32,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18378	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	2,39,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18386	A	G	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.01948051948051948	.	A:147:C:0:G:3:T:0:N:0:O:4	.	3,75,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18441	C	A	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:136:G:0:T:0:N:0:O:1	.	3,59,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:28:C:0:G:0:T:1:N:0:O:1	.	1,11,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:96:N:0:O:0	.	2,41,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18821	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:122:T:0:N:0:O:0	.	1,50,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,45,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:0:C:5:G:0:T:123:N:0:O:1	.	0,74,5,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.016853932584269662	.	A:3:C:0:G:0:T:135:N:0:O:40	.	0,62,3,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:97:N:0:O:2	.	0,58,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:73:C:0:G:2:T:0:N:0:O:2	.	2,31,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:84:T:0:N:0:O:0	.	4,66,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	20383	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,40,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	20493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	0,64,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	20615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:93:T:1:N:0:O:8	.	3,54,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:114:C:0:G:4:T:0:N:0:O:0	.	4,52,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	20940	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:1:G:99:T:3:N:0:O:0	.	3,37,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:128:T:0:N:0:O:0	.	3,46,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:0:C:61:G:0:T:3:N:0:O:0	.	0,39,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:139:T:0:N:0:O:3	.	3,51,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.01948051948051948	.	A:0:C:127:G:0:T:3:N:0:O:24	.	0,82,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21737	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:105:N:0:O:0	.	1,66,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:75:G:0:T:5:N:0:O:6	.	4,28,1,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:1:C:84:G:0:T:3:N:0:O:1	.	0,67,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	0,67,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:101:T:0:N:0:O:7	.	3,49,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21903	C	G	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:92:G:3:T:0:N:0:O:4	.	3,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,40,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.04487179487179487	.	A:145:C:0:G:7:T:0:N:0:O:4	.	7,80,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:146:C:0:G:0:T:4:N:0:O:0	.	2,98,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:0:G:3:T:103:N:0:O:0	.	3,46,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	22550	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:82:G:0:T:3:N:0:O:1	.	2,43,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:114:T:3:N:0:O:3	.	0,77,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	22624	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:116:G:0:T:3:N:0:O:2	.	0,60,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:100:T:0:N:0:O:2	.	3,21,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	22988	G	C	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:1:C:2:G:91:T:0:N:0:O:1	.	2,46,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:107:G:0:T:3:N:0:O:2	.	0,84,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	143	.	20	.	0.8881118881118881	.	A:0:C:0:G:127:T:0:N:0:O:16	.	67,83,60,60	270.692	1706.6	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,51,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23598	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:66:C:2:G:0:T:0:N:0:O:2	.	0,49,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23615	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:0:C:45:G:0:T:2:N:0:O:2	.	0,22,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23645	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:2:G:0:T:68:N:0:O:1	.	0,40,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:4:G:0:T:77:N:0:O:0	.	0,51,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23755	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	1,41,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.18947368421052632	.	A:0:C:77:G:0:T:18:N:0:O:0	.	0,58,18,37	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:105:N:0:O:0	.	0,61,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23914	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:0:T:3:N:0:O:0	.	0,51,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:142:C:0:G:0:T:3:N:0:O:0	.	3,63,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:3:C:0:G:0:T:58:N:0:O:0	.	3,16,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:111:T:0:N:0:O:3	.	3,66,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24310	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:106:G:0:T:3:N:0:O:6	.	0,80,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:0:G:2:T:0:N:0:O:0	.	2,36,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	0,72,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:0:C:64:G:0:T:3:N:0:O:0	.	0,58,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.04	.	A:6:C:0:G:121:T:0:N:0:O:23	.	6,66,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,60,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24931	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:84:N:0:O:6	.	0,49,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:0:G:4:T:92:N:0:O:2	.	4,32,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:106:C:0:G:0:T:5:N:0:O:0	.	5,48,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25516	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:95:G:0:T:0:N:0:O:1	.	0,59,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25604	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:85:N:0:O:0	.	0,47,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25610	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:93:N:0:O:3	.	0,63,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:2:C:95:G:0:T:0:N:0:O:12	.	2,64,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:95:G:0:T:3:N:0:O:13	.	2,59,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.10294117647058823	.	A:60:C:7:G:0:T:0:N:0:O:1	.	1,41,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:79:C:1:G:0:T:2:N:0:O:5	.	0,62,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:74:N:0:O:0	.	0,49,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:0:G:2:T:0:N:0:O:0	.	2,28,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26143	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:102:T:0:N:0:O:0	.	3,50,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:4:G:0:T:85:N:0:O:0	.	0,46,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:131:G:0:T:4:N:0:O:10	.	0,76,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,51,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	1,57,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:90:C:0:G:3:T:0:N:0:O:2	.	3,30,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:6:C:0:G:94:T:0:N:0:O:1	.	6,32,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26542	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	0,65,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.03977272727272727	.	A:0:C:168:G:0:T:7:N:0:O:1	.	0,133,7,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:111:C:0:G:0:T:4:N:0:O:3	.	0,64,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:3:G:0:T:73:N:0:O:3	.	0,29,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,70,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.11538461538461539	.	A:9:C:0:G:69:T:0:N:0:O:0	.	9,16,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26730	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	90	.	20	.	0.6444444444444445	.	A:0:C:0:G:0:T:58:N:0:O:32	.	26,58,32,32	173.719	1508.5	.	.	.	.	mixed position	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,47,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,74,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	26911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	2,13,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:0:C:90:G:0:T:6:N:0:O:1	.	0,65,6,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	27270	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	1,50,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	27367	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:123:G:0:T:1:N:0:O:3	.	0,73,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:127:G:0:T:3:N:0:O:8	.	0,73,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:84:T:0:N:0:O:2	.	3,30,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:98:G:0:T:0:N:0:O:3	.	2,63,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	27848	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:95:C:2:G:0:T:0:N:0:O:4	.	2,41,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:5:C:0:G:0:T:74:N:0:O:1	.	1,41,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28220	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:96:C:0:G:2:T:0:N:0:O:4	.	0,45,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28232	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:0:C:126:G:0:T:4:N:0:O:2	.	0,71,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:93:N:0:O:4	.	0,58,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28348	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,32,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,36,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:0:G:93:T:1:N:0:O:0	.	4,35,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28590	C	A	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:120:G:0:T:0:N:0:O:4	.	3,54,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,18,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,31,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:80:G:0:T:5:N:0:O:8	.	0,41,5,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	123	.	20	.	1.0	.	A:123:C:0:G:0:T:0:N:0:O:0	.	34,34,89,89	617.013	2327.0	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	107	.	20	.	1.0	.	A:107:C:0:G:0:T:0:N:0:O:0	.	24,24,83,83	617.013	2327.0	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	100	.	20	.	1.0	.	A:0:C:100:G:0:T:0:N:0:O:0	.	18,18,82,82	617.013	2327.0	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	28897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:3:G:0:T:94:N:0:O:2	.	1,36,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:5:C:0:G:103:T:0:N:0:O:2	.	5,14,0,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:82:G:0:T:3:N:0:O:0	.	0,32,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	28926	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	0,30,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:97:G:0:T:2:N:0:O:10	.	0,35,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:0:C:40:G:0:T:2:N:0:O:6	.	1,18,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:0:C:75:G:0:T:4:N:0:O:0	.	0,32,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:0:C:122:G:0:T:4:N:0:O:9	.	0,119,4,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29109	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:4:C:113:G:0:T:0:N:0:O:6	.	4,59,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29132	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:97:T:3:N:0:O:0	.	1,54,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:1:C:3:G:97:T:0:N:0:O:0	.	3,48,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:67:C:0:G:3:T:0:N:0:O:1	.	0,31,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:56:C:0:G:2:T:0:N:0:O:0	.	1,19,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:101:G:0:T:3:N:0:O:0	.	0,62,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:83:C:0:G:6:T:0:N:0:O:1	.	6,16,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.056074766355140186	.	A:6:C:0:G:96:T:0:N:0:O:5	.	6,26,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29437	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:136:C:0:G:3:T:0:N:0:O:0	.	3,62,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:120:C:5:G:0:T:0:N:0:O:1	.	0,62,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	3,46,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	29578	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:122:G:0:T:4:N:0:O:1	.	4,73,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00147	artic-pipeline	NB11	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00147	artic-pipeline	NB11	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	8	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	138	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:1:G:0:T:0:N:0:O:0	.	1,5,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	20	.	20	.	1.0	.	A:0:C:0:G:0:T:20:N:0:O:0	.	7,7,13,13	66.227	1345.9	.	depth near threshold	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:113:C:0:G:4:T:0:N:0:O:0	.	4,29,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:106:C:0:G:3:T:0:N:0:O:3	.	0,53,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,50,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02830188679245283	.	A:0:C:206:G:0:T:6:N:0:O:0	.	1,113,5,99	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:83:N:0:O:1	.	0,52,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	1.0	.	A:0:C:0:G:0:T:136:N:0:O:0	.	69,69,67,67	70.0	1482.7	.	.	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.08571428571428572	.	A:0:C:57:G:0:T:6:N:0:O:7	.	0,36,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	1189	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:2:G:0:T:0:N:0:O:2	.	2,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	0,37,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,54,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1461	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:93:C:0:G:3:T:1:N:0:O:3	.	2,45,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:1:C:0:G:107:T:3:N:0:O:1	.	0,43,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	1,17,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1741	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:106:C:0:G:3:T:0:N:0:O:2	.	3,46,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	1818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:54:C:0:G:2:T:0:N:0:O:0	.	2,14,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:0:G:120:T:0:N:0:O:0	.	4,74,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2097	A	G	A	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.026041666666666668	.	A:186:C:0:G:5:T:0:N:0:O:1	.	5,77,0,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.1393939393939394	.	A:23:C:0:G:142:T:0:N:0:O:0	.	23,52,0,113	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	2252	C	A	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:37:G:0:T:0:N:0:O:2	.	1,20,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2253	A	C	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:1:G:0:T:0:N:0:O:0	.	1,18,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2256	T	G	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:1:T:34:N:0:O:2	.	1,15,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,17,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2271	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,13,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2273	G	T	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:31:T:1:N:0:O:0	.	0,10,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2309	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,13,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2439	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,12,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	1,14,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,19,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	2493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.06451612903225806	.	A:24:C:0:G:2:T:0:N:0:O:5	.	0,10,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2503	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,11,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2504	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,12,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2505	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,15,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2508	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:25:G:0:T:0:N:0:O:0	.	1,14,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2583	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:0:C:189:G:0:T:5:N:0:O:1	.	0,102,5,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2677	T	C	T	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:0:C:4:G:0:T:177:N:0:O:0	.	0,83,4,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:190:C:4:G:1:T:0:N:0:O:1	.	4,95,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.03314917127071823	.	A:172:C:0:G:6:T:0:N:0:O:3	.	6,78,0,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:127:G:0:T:3:N:0:O:4	.	0,104,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:133:G:0:T:3:N:0:O:10	.	1,129,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2910	C	A	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.07142857142857142	.	A:2:C:20:G:0:T:0:N:0:O:6	.	2,18,0,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2926	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:25:N:0:O:0	.	1,16,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2928	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,15,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	2983	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,12,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3030	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:26:T:0:N:0:O:1	.	1,16,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3037	C	T	N	2	allele in negative control	Alarm	True	False	False	24	.	20	.	0.75	.	A:0:C:0:G:0:T:18:N:0:O:6	.	12,18,6,6	69.237	297.7	.	.	allele in NTC	mismatch(n+m)	mixed position	.	.	ambig in key position	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	3039	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	1,13,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3080	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:20:T:0:N:0:O:1	.	1,11,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3133	A	C	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:1:G:0:T:0:N:0:O:0	.	0,12,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:117:T:0:N:0:O:9	.	3,46,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:95:C:0:G:4:T:0:N:0:O:2	.	4,20,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3201	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	3,43,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:73:G:0:T:2:N:0:O:3	.	0,53,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	3412	T	C	T	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.01818181818181818	.	A:0:C:3:G:0:T:102:N:0:O:60	.	3,103,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.06557377049180328	.	A:53:C:0:G:0:T:4:N:0:O:4	.	4,28,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:77:N:0:O:24	.	1,49,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:5:C:0:G:90:T:0:N:0:O:4	.	0,56,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:0:C:4:G:0:T:126:N:0:O:2	.	0,72,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	2,12,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:68:G:0:T:2:N:0:O:1	.	0,25,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4264	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:3:T:112:N:0:O:1	.	1,50,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:2:G:0:T:61:N:0:O:0	.	0,38,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.029556650246305417	.	A:6:C:1:G:193:T:1:N:0:O:2	.	0,112,6,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:2:C:143:G:0:T:5:N:0:O:7	.	0,84,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.052941176470588235	.	A:143:C:0:G:1:T:9:N:0:O:17	.	0,117,9,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4695	T	C	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:2:G:0:T:64:N:0:O:0	.	0,32,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4710	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:64:G:0:T:2:N:0:O:0	.	0,27,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4827	C	A	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:46:G:0:T:0:N:0:O:2	.	0,19,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4835	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:3:C:0:G:58:T:0:N:0:O:0	.	3,24,0,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:0:C:0:G:57:T:2:N:0:O:0	.	2,22,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	0,19,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:0:C:47:G:0:T:1:N:0:O:6	.	0,30,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:67:G:0:T:2:N:0:O:6	.	0,32,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:0:G:3:T:61:N:0:O:6	.	0,30,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:0:T:126:N:0:O:11	.	2,74,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:72:G:0:T:1:N:0:O:5	.	0,76,2,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5138	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:76:T:0:N:0:O:1	.	3,25,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:0:T:72:N:0:O:2	.	2,25,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,46,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:90:G:0:T:4:N:0:O:1	.	0,49,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.11842105263157894	.	A:0:C:66:G:0:T:9:N:0:O:1	.	0,60,9,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:0:C:4:G:0:T:62:N:0:O:1	.	0,37,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:1:C:113:G:0:T:3:N:0:O:2	.	0,72,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.03731343283582089	.	A:0:C:128:G:0:T:5:N:0:O:1	.	0,66,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6471	C	A	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:136:G:0:T:0:N:0:O:1	.	0,71,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:145:C:0:G:3:T:0:N:0:O:1	.	3,49,0,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6530	G	T	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:28:T:1:N:0:O:0	.	1,12,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6539	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:19:G:0:T:1:N:0:O:1	.	0,14,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6554	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	1,19,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6576	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	1,20,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6582	C	A	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:25:G:0:T:0:N:0:O:1	.	0,16,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,19,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,16,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6596	A	C	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:1:G:0:T:0:N:0:O:0	.	0,20,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	0,21,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6626	A	C	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:34:C:1:G:0:T:0:N:0:O:4	.	0,22,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6627	C	A	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:32:G:0:T:0:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6648	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,16,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6682	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.08695652173913043	.	A:0:C:2:G:0:T:20:N:0:O:1	.	0,14,2,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6700	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,18,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:0:T:1:N:0:O:0	.	0,21,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6704	A	C	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:1:G:0:T:0:N:0:O:0	.	1,20,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6705	A	T	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:0:T:1:N:0:O:0	.	1,18,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:0:T:1:N:0:O:0	.	0,16,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.14814814814814814	.	A:4:C:0:G:20:T:0:N:0:O:3	.	4,13,0,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:91:T:0:N:0:O:0	.	4,31,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:97:G:0:T:2:N:0:O:2	.	0,58,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7225	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,10,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:42:T:0:N:0:O:0	.	1,14,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:0:C:70:G:0:T:3:N:0:O:2	.	0,52,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	7686	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,19,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,14,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7718	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	1,17,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7721	C	A	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:34:G:0:T:0:N:0:O:0	.	1,17,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7725	C	A	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:35:G:0:T:0:N:0:O:0	.	1,21,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7742	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:36:C:0:G:1:T:0:N:0:O:1	.	1,19,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7767	T	A	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:0:T:39:N:0:O:1	.	0,20,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7771	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:40:N:0:O:1	.	0,22,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7776	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:27:C:0:G:1:T:0:N:0:O:1	.	1,13,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.06666666666666667	.	A:28:C:2:G:0:T:0:N:0:O:0	.	2,11,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7811	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,17,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.0625	.	A:30:C:0:G:2:T:0:N:0:O:0	.	2,10,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7845	T	G	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:1:T:32:N:0:O:4	.	0,17,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,17,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7894	T	G	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:1:T:31:N:0:O:0	.	0,13,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:38:G:0:T:1:N:0:O:1	.	0,20,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7924	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:1:G:0:T:36:N:0:O:2	.	0,19,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7925	G	C	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:33:T:0:N:0:O:1	.	1,17,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	7966	A	C	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:1:G:0:T:0:N:0:O:0	.	1,13,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:109:G:0:T:3:N:0:O:2	.	0,57,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:141:C:0:G:4:T:0:N:0:O:0	.	4,44,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8356	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,15,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8399	A	T	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:0:T:1:N:0:O:0	.	1,16,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8430	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,14,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8440	A	T	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:0:T:1:N:0:O:0	.	1,8,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8452	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:19:C:0:G:1:T:0:N:0:O:1	.	1,13,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8454	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:20:T:0:N:0:O:0	.	1,12,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8521	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,13,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8553	G	T	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:0:G:19:T:1:N:0:O:0	.	1,8,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8598	T	G	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:1:T:25:N:0:O:1	.	1,15,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8600	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	0,14,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8601	T	G	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:0:G:1:T:24:N:0:O:0	.	0,13,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8616	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	1,10,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:4:C:0:G:61:T:0:N:0:O:0	.	4,5,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:0:T:85:N:0:O:6	.	3,54,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9186	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:101:T:0:N:0:O:0	.	3,45,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:88:G:0:T:4:N:0:O:2	.	0,54,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	9389	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	0,53,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:2:G:0:T:65:N:0:O:1	.	0,44,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:2:G:0:T:60:N:0:O:0	.	1,53,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9629	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:62:N:0:O:1	.	1,55,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9865	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:73:N:0:O:0	.	0,54,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9892	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,57,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:88:G:0:T:2:N:0:O:15	.	0,61,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	9917	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	2,31,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:1:G:0:T:99:N:0:O:2	.	0,56,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:101:G:0:T:4:N:0:O:4	.	0,64,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	10533	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:0:G:129:T:3:N:0:O:0	.	3,57,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.03587443946188341	.	A:0:C:8:G:0:T:212:N:0:O:3	.	0,121,8,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10778	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:0:C:73:G:0:T:4:N:0:O:2	.	0,52,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10794	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:0:T:86:N:0:O:1	.	0,54,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:63:T:0:N:0:O:1	.	1,47,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:89:T:0:N:0:O:2	.	1,40,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:0:G:3:T:83:N:0:O:4	.	0,48,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:82:G:0:T:0:N:0:O:15	.	2,61,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	11051	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:129:G:0:T:0:N:0:O:3	.	3,75,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	11637	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.022727272727272728	.	A:0:C:168:G:0:T:4:N:0:O:4	.	0,90,4,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.11224489795918367	.	A:0:C:87:G:0:T:11:N:0:O:0	.	0,74,11,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	11839	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,68,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	11868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,59,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:60:C:0:G:3:T:0:N:0:O:0	.	1,48,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	12071	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:85:T:0:N:0:O:1	.	0,60,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	12072	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:2:G:0:T:1:N:0:O:1	.	0,60,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12086	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,55,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12329	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:87:C:0:G:3:T:0:N:0:O:3	.	3,26,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:114:C:0:G:3:T:0:N:0:O:1	.	3,51,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:106:T:0:N:0:O:2	.	3,43,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:63:N:0:O:12	.	0,25,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12560	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:88:G:0:T:0:N:0:O:1	.	1,36,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:83:C:0:G:1:T:2:N:0:O:3	.	2,46,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:74:G:0:T:3:N:0:O:0	.	0,61,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12749	G	T	G	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.037037037037037035	.	A:1:C:0:G:206:T:8:N:0:O:1	.	8,97,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:0:G:100:T:0:N:0:O:1	.	5,39,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:105:C:0:G:3:T:0:N:0:O:2	.	3,21,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	1,26,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:91:G:0:T:2:N:0:O:3	.	0,70,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:2:G:0:T:97:N:0:O:8	.	0,51,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:101:C:0:G:4:T:0:N:0:O:17	.	4,53,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:63:G:1:T:2:N:0:O:2	.	0,63,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:87:T:0:N:0:O:3	.	2,61,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:88:T:0:N:0:O:8	.	3,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,27,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:114:G:0:T:0:N:0:O:6	.	4,61,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:4:C:0:G:109:T:0:N:0:O:15	.	3,54,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	3,51,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:4:C:0:G:131:T:0:N:0:O:5	.	4,42,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:94:C:0:G:3:T:0:N:0:O:4	.	0,57,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14053	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:97:G:0:T:3:N:0:O:3	.	0,49,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	3,32,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05128205128205128	.	A:0:C:94:G:0:T:6:N:0:O:17	.	0,66,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14407	C	A	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:47:G:0:T:0:N:0:O:1	.	0,20,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	65	.	20	.	0.9846153846153847	.	A:0:C:1:G:0:T:64:N:0:O:0	.	31,31,33,34	208.474	1065.4	.	.	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	14475	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:0:T:2:N:0:O:0	.	0,65,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14477	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:92:C:0:G:3:T:0:N:0:O:2	.	3,55,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:0:G:3:T:0:N:0:O:1	.	3,30,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,22,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:110:T:0:N:0:O:0	.	4,38,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:83:G:0:T:2:N:0:O:9	.	0,52,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	2,51,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14728	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:0:T:3:N:0:O:0	.	2,56,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14758	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,56,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14910	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,14,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	14967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:23:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15053	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,15,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15054	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,15,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15070	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:26:G:0:T:1:N:0:O:4	.	0,15,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15071	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:23:N:0:O:1	.	0,16,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15072	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:23:N:0:O:1	.	0,17,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15085	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	1,18,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,16,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15128	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:19:T:0:N:0:O:1	.	1,15,0,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15132	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	1,17,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:0:T:1:N:0:O:0	.	0,15,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15169	A	C	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:1:G:0:T:0:N:0:O:0	.	1,17,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15186	T	A	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:0:T:28:N:0:O:0	.	1,19,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:140:G:0:T:3:N:0:O:0	.	1,71,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15267	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:81:C:0:G:2:T:0:N:0:O:3	.	1,31,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	2,35,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15407	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:115:G:0:T:3:N:0:O:1	.	0,62,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	15760	G	A	A	17	accept high frequency variant	Pass	False	True	True	99	.	20	.	1.0	.	A:99:C:0:G:0:T:0:N:0:O:0	.	54,54,45,45	70.0	1280.4	.	.	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.10344827586206896	.	A:0:C:50:G:0:T:6:N:0:O:2	.	0,32,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.0673076923076923	.	A:0:C:96:G:0:T:7:N:0:O:1	.	0,69,7,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	16137	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:134:T:0:N:0:O:0	.	2,62,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.12903225806451613	.	A:0:C:27:G:0:T:4:N:0:O:0	.	0,22,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16238	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:49:G:0:T:2:N:0:O:1	.	0,29,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:28:G:0:T:1:N:0:O:0	.	0,22,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	16264	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,27,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16268	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:35:C:0:G:1:T:0:N:0:O:1	.	1,15,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:38:T:0:N:0:O:1	.	1,15,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16272	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,26,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,18,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16304	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	0,28,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	0,27,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16368	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:0:C:2:G:0:T:42:N:0:O:0	.	0,25,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16377	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:42:T:0:N:0:O:0	.	0,20,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:37:G:0:T:1:N:0:O:4	.	0,19,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16394	C	G	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:1:T:0:N:0:O:0	.	0,23,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:0:T:1:N:0:O:1	.	1,20,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16409	C	G	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:1:T:0:N:0:O:0	.	1,20,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16430	T	A	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:2:C:0:G:0:T:42:N:0:O:0	.	1,19,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16431	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:45:C:0:G:1:T:0:N:0:O:2	.	0,26,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:83:N:0:O:4	.	2,28,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:0:C:0:G:113:T:4:N:0:O:0	.	4,49,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16549	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:138:T:0:N:0:O:0	.	2,58,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:97:C:0:G:4:T:0:N:0:O:5	.	4,33,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:0:G:4:T:101:N:0:O:2	.	0,57,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,31,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.022727272727272728	.	A:195:C:0:G:5:T:0:N:0:O:20	.	5,98,0,122	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.043243243243243246	.	A:8:C:0:G:160:T:0:N:0:O:17	.	8,59,0,126	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:173:C:0:G:4:T:0:N:0:O:3	.	4,69,0,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.07246376811594203	.	A:5:C:0:G:0:T:62:N:0:O:2	.	5,19,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0707070707070707	.	A:90:C:0:G:7:T:0:N:0:O:2	.	7,48,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	1,45,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:71:G:0:T:2:N:0:O:2	.	0,49,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	0,48,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,44,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	0,38,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17641	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:116:T:0:N:0:O:3	.	3,45,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17667	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,37,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17704	A	G	A	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:183:C:0:G:5:T:0:N:0:O:1	.	5,62,0,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.10810810810810811	.	A:0:C:65:G:0:T:8:N:0:O:1	.	0,43,8,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.08247422680412371	.	A:80:C:0:G:0:T:8:N:0:O:9	.	0,43,8,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:91:T:0:N:0:O:0	.	0,68,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:75:T:0:N:0:O:1	.	2,22,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	18060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:94:G:0:T:2:N:0:O:6	.	0,61,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	18150	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,54,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:1:C:115:G:0:T:3:N:0:O:0	.	0,64,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	18364	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:133:G:0:T:3:N:0:O:0	.	0,72,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	18734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:40:T:0:N:0:O:3	.	1,27,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:37:C:0:G:0:T:1:N:0:O:2	.	0,20,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:0:G:5:T:81:N:0:O:0	.	5,26,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:0:C:134:G:0:T:4:N:0:O:3	.	0,58,4,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.047244094488188976	.	A:0:C:6:G:0:T:121:N:0:O:0	.	0,73,6,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	19722	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	1,35,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	20224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:4:C:0:G:79:T:0:N:0:O:3	.	4,24,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	20370	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	2,52,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	0,62,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:0:G:2:T:73:N:0:O:0	.	2,19,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	20687	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:41:G:0:T:1:N:0:O:2	.	1,23,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:42:T:0:N:0:O:0	.	0,5,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	20792	C	A	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.01818181818181818	.	A:1:C:45:G:0:T:0:N:0:O:9	.	0,10,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:131:T:0:N:0:O:0	.	3,46,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21020	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:132:G:0:T:3:N:0:O:1	.	0,59,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21078	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:92:C:2:G:0:T:1:N:0:O:3	.	2,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:0:C:0:G:4:T:58:N:0:O:0	.	4,11,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:119:G:0:T:3:N:0:O:0	.	0,58,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:0:C:47:G:0:T:2:N:0:O:0	.	0,31,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.05357142857142857	.	A:53:C:0:G:3:T:0:N:0:O:0	.	3,17,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:70:T:0:N:0:O:2	.	3,32,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:69:N:0:O:1	.	0,42,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21654	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:0:C:59:G:0:T:3:N:0:O:2	.	0,42,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21730	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	2,29,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:0:T:2:N:0:O:1	.	2,19,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:91:C:0:G:3:T:0:N:0:O:2	.	3,42,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:81:G:0:T:2:N:0:O:2	.	0,36,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	21920	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:1:G:87:T:1:N:0:O:0	.	2,35,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	21980	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:0:T:72:N:0:O:0	.	2,28,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:1:C:0:G:72:T:2:N:0:O:0	.	2,38,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.04895104895104895	.	A:136:C:0:G:7:T:0:N:0:O:0	.	7,69,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,52,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:3:T:104:N:0:O:1	.	3,41,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	22899	G	T	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:0:C:0:G:137:T:4:N:0:O:0	.	4,83,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	22922	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,35,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	22948	A	C	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:141:C:3:G:2:T:0:N:0:O:0	.	1,77,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:0:G:3:T:114:N:0:O:23	.	0,85,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	142	.	20	.	0.8802816901408451	.	A:0:C:0:G:125:T:0:N:0:O:17	.	55,72,70,70	210.0	1697.5	.	.	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	23424	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:132:G:0:T:3:N:0:O:1	.	3,58,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23426	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:0:G:131:T:3:N:0:O:1	.	3,66,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23527	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,14,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23540	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	1,13,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:23:C:0:G:1:T:0:N:0:O:2	.	1,6,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23554	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,10,0,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23596	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,10,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23622	T	A	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:0:T:21:N:0:O:0	.	0,10,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23646	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,11,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23659	T	G	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:1:T:21:N:0:O:0	.	0,9,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23678	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:23:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23691	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:29:C:0:G:1:T:0:N:0:O:1	.	1,16,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,13,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23744	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:25:G:0:T:0:N:0:O:0	.	0,10,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23760	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	1,12,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23765	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,10,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23812	C	A	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:28:G:0:T:0:N:0:O:0	.	0,11,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.16	.	A:0:C:84:G:0:T:16:N:0:O:0	.	0,65,16,35	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,68,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:88:G:0:T:2:N:0:O:11	.	0,53,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:3:C:0:G:0:T:54:N:0:O:1	.	3,18,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:91:T:0:N:0:O:0	.	5,20,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:44:G:1:T:2:N:0:O:5	.	0,46,2,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,15,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:86:T:0:N:0:O:2	.	2,17,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24309	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:105:N:0:O:1	.	0,67,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24422	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:3:C:154:G:0:T:4:N:0:O:25	.	0,83,4,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:95:G:0:T:1:N:0:O:1	.	2,53,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	2,44,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:0:C:93:G:0:T:5:N:0:O:2	.	0,76,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24721	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:92:N:0:O:3	.	1,81,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:79:T:0:N:0:O:1	.	0,53,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:73:N:0:O:0	.	1,27,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	25101	A	C	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:57:C:2:G:0:T:0:N:0:O:0	.	2,39,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.05825242718446602	.	A:6:C:0:G:96:T:1:N:0:O:0	.	6,63,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.05825242718446602	.	A:0:C:0:G:6:T:95:N:0:O:2	.	6,32,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	1,40,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:78:G:0:T:4:N:0:O:9	.	0,62,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	25554	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:72:N:0:O:1	.	0,31,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	106	.	20	.	1.0	.	A:0:C:0:G:0:T:106:N:0:O:0	.	40,40,66,66	280.0	1802.3	.	.	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	25592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,16,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:0:C:87:G:0:T:5:N:0:O:13	.	2,54,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:65:G:0:T:2:N:0:O:7	.	1,46,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:79:C:2:G:0:T:0:N:0:O:4	.	1,50,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:109:G:0:T:4:N:0:O:0	.	0,69,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:84:T:0:N:0:O:2	.	2,29,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:4:C:0:G:186:T:0:N:0:O:7	.	4,77,0,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:77:N:0:O:1	.	0,51,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:127:G:0:T:3:N:0:O:5	.	0,80,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	0,56,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:0:G:99:T:0:N:0:O:1	.	4,42,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,28,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26540	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	0,67,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.021739130434782608	.	A:5:C:0:G:0:T:225:N:0:O:0	.	5,120,0,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.03205128205128205	.	A:0:C:151:G:0:T:5:N:0:O:0	.	0,128,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:0:G:2:T:0:N:0:O:2	.	2,40,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:84:G:0:T:3:N:0:O:6	.	0,34,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:3:G:0:T:83:N:0:O:0	.	0,59,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:0:T:2:N:0:O:1	.	1,18,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:3:C:0:G:69:T:1:N:0:O:0	.	3,7,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:81:G:0:T:3:N:0:O:2	.	0,59,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	2,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:84:C:0:G:2:T:0:N:0:O:6	.	0,48,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	0,61,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:94:C:0:G:2:T:1:N:0:O:3	.	2,52,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:6:C:0:G:84:T:0:N:0:O:0	.	6,26,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:94:G:0:T:4:N:0:O:0	.	0,79,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:1:T:2:N:0:O:1	.	1,69,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27109	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27175	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.01775147928994083	.	A:0:C:144:G:0:T:3:N:0:O:22	.	0,78,3,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:0:C:130:G:0:T:4:N:0:O:15	.	0,72,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.026737967914438502	.	A:182:C:0:G:0:T:5:N:0:O:0	.	3,66,2,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:86:G:0:T:0:N:0:O:1	.	2,46,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27708	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	1,43,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:31:T:0:N:0:O:0	.	1,12,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27844	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,18,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27874	C	A	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:34:G:0:T:0:N:0:O:1	.	0,12,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27875	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:28:N:0:O:1	.	0,12,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27895	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	0,12,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	27896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.05405405405405406	.	A:2:C:0:G:35:T:0:N:0:O:0	.	1,14,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28016	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,14,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28039	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	1,14,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28045	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,15,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	28055	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	0,12,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	1,9,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28057	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	0,16,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:1:T:76:N:0:O:4	.	0,50,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:86:C:0:G:2:T:0:N:0:O:4	.	1,26,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28776	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:68:G:0:T:1:N:0:O:19	.	0,47,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:82:G:0:T:3:N:0:O:11	.	0,43,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28796	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:106:T:0:N:0:O:1	.	4,27,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:63:G:0:T:3:N:0:O:0	.	0,30,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:7:C:0:G:94:T:0:N:0:O:0	.	7,11,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:92:G:0:T:3:N:0:O:1	.	0,34,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.017543859649122806	.	A:0:C:46:G:0:T:1:N:0:O:10	.	0,27,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:0:C:127:G:0:T:4:N:0:O:4	.	0,112,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,49,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	1,62,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:86:T:0:N:0:O:0	.	3,43,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:89:N:0:O:2	.	0,63,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:80:C:0:G:2:T:0:N:0:O:3	.	0,41,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29416	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:121:G:0:T:3:N:0:O:4	.	0,68,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,60,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:110:C:5:G:0:T:0:N:0:O:1	.	0,60,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29513	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0	.	A:0:C:0:G:144:T:0:N:0:O:2	.	0,77,0,69	7.375	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29514	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.0	.	A:0:C:140:G:0:T:0:N:0:O:1	.	0,71,0,70	7.375	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29520	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.007462686567164179	.	A:1:C:127:G:0:T:0:N:0:O:6	.	0,83,1,51	3.719	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29529	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.0	.	A:0:C:111:G:1:T:0:N:0:O:0	.	0,41,0,71	5.125	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	29549	A	C	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.0	.	A:121:C:0:G:0:T:0:N:0:O:0	.	0,63,0,58	3.406	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00148	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00148	artic-pipeline	NB12	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	2	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	55	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	0,4,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	66	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:0:C:35:G:0:T:2:N:0:O:2	.	0,6,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	67	T	A	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:0:T:36:N:0:O:6	.	0,7,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:26:G:0:T:1:N:0:O:0	.	0,5,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	176	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,2,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:23:N:0:O:1	.	0,2,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:23:G:0:T:1:N:0:O:1	.	0,3,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,3,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	183	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,3,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,2,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,4,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	356	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:133:N:0:O:0	.	2,48,1,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:111:C:0:G:4:T:0:N:0:O:0	.	4,41,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	955	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:68:G:0:T:2:N:0:O:0	.	0,42,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:68:G:0:T:3:N:0:O:8	.	0,44,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	1095	T	A	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:0:T:102:N:0:O:4	.	2,66,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:2:T:0:N:0:O:0	.	1,50,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,56,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	1338	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,25,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:94:G:0:T:3:N:0:O:2	.	0,56,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:56:C:2:G:0:T:0:N:0:O:2	.	0,32,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.06201550387596899	.	A:8:C:0:G:120:T:0:N:0:O:1	.	8,29,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	2303	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:47:C:0:G:1:T:0:N:0:O:5	.	1,35,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:0:T:30:N:0:O:0	.	1,20,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2380	A	T	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:49:C:0:G:0:T:1:N:0:O:3	.	1,22,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2401	C	A	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:48:G:0:T:0:N:0:O:0	.	0,21,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:48:G:0:T:1:N:0:O:3	.	0,21,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:1:G:0:T:0:N:0:O:0	.	1,20,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2476	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,17,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:55:T:0:N:0:O:2	.	2,20,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2496	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:47:T:0:N:0:O:1	.	0,14,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2513	G	T	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:0:C:0:G:49:T:2:N:0:O:0	.	1,20,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.026595744680851064	.	A:179:C:0:G:5:T:0:N:0:O:4	.	5,64,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:3:G:0:T:146:N:0:O:1	.	0,86,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2909	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:1:G:0:T:0:N:0:O:0	.	1,8,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:40:G:0:T:1:N:0:O:5	.	1,21,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2971	G	C	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:38:T:0:N:0:O:0	.	1,25,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,25,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	2981	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,24,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3008	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:0:T:1:N:0:O:0	.	1,24,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3020	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,23,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3030	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:43:T:1:N:0:O:1	.	0,23,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3062	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	1,14,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3063	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,16,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,13,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3085	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:46:T:0:N:0:O:2	.	1,27,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3100	T	G	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:0:G:1:T:39:N:0:O:0	.	0,24,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3101	C	A	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:43:G:0:T:0:N:0:O:0	.	0,26,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:41:G:0:T:2:N:0:O:0	.	1,26,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:0:G:41:T:1:N:0:O:0	.	0,26,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:36:N:0:O:0	.	0,25,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:0:G:30:T:1:N:0:O:3	.	0,25,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:4:C:0:G:0:T:153:N:0:O:5	.	0,78,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:89:G:0:T:2:N:0:O:3	.	0,44,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:2:T:0:N:0:O:0	.	1,16,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3521	G	T	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:0:G:30:T:1:N:0:O:0	.	0,13,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3540	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.14285714285714285	.	A:0:C:18:G:0:T:3:N:0:O:0	.	0,14,3,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3554	C	A	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:20:G:0:T:0:N:0:O:0	.	1,10,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3556	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	1,13,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3557	A	T	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:0:T:1:N:0:O:0	.	0,16,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3558	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	0,15,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3559	A	T	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:0:T:1:N:0:O:0	.	0,14,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3579	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:24:N:0:O:1	.	1,15,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3591	A	C	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:1:G:0:T:0:N:0:O:0	.	0,18,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3645	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:31:C:0:G:1:T:0:N:0:O:1	.	1,16,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3655	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,12,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3658	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:30:N:0:O:2	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3698	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:20:G:0:T:1:N:0:O:1	.	0,8,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3774	G	C	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:19:T:0:N:0:O:0	.	1,13,0,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3777	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:25:G:0:T:0:N:0:O:0	.	1,16,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:0:G:2:T:85:N:0:O:17	.	0,32,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	0,34,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3876	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,26,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:71:G:0:T:3:N:0:O:0	.	0,51,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,51,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:121:T:0:N:0:O:3	.	1,35,2,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,32,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:0:T:110:N:0:O:28	.	0,63,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.03271028037383177	.	A:0:C:0:G:197:T:7:N:0:O:10	.	0,140,7,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.03825136612021858	.	A:7:C:0:G:175:T:0:N:0:O:1	.	0,94,7,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.04918032786885246	.	A:0:C:110:G:0:T:6:N:0:O:6	.	0,59,6,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:124:C:0:G:0:T:4:N:0:O:5	.	0,67,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4656	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:138:T:0:N:0:O:0	.	3,54,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:71:G:0:T:4:N:0:O:0	.	0,46,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:87:G:0:T:2:N:0:O:10	.	0,61,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:73:N:0:O:1	.	1,55,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:118:G:0:T:3:N:0:O:7	.	0,57,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	4965	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:100:G:0:T:3:N:0:O:3	.	1,48,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	5008	G	T	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:28:T:1:N:0:O:1	.	0,14,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5009	C	A	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:36:G:0:T:0:N:0:O:1	.	1,21,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5024	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,22,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5044	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:46:T:0:N:0:O:1	.	1,28,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5062	G	T	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:42:T:1:N:0:O:1	.	0,25,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	5084	A	T	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:0:T:1:N:0:O:0	.	1,16,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:0:T:47:N:0:O:3	.	1,28,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5097	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:0:T:1:N:0:O:0	.	0,27,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5138	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:26:T:0:N:0:O:1	.	1,7,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5147	C	A	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:40:G:0:T:0:N:0:O:1	.	1,22,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5184	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,16,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	5185	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,23,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5206	G	T	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:46:T:1:N:0:O:0	.	1,25,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5219	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:43:G:0:T:1:N:0:O:1	.	0,26,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,22,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5252	G	C	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:41:T:0:N:0:O:0	.	1,25,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5259	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,18,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5260	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:33:N:0:O:8	.	0,22,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5265	T	G	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:0:G:1:T:40:N:0:O:0	.	1,22,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,18,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5318	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:135:G:0:T:3:N:0:O:4	.	2,72,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:128:G:0:T:3:N:0:O:1	.	3,73,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5385	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	0,61,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5499	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:92:C:0:G:0:T:6:N:0:O:0	.	2,38,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:80:G:0:T:3:N:0:O:2	.	0,46,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.14084507042253522	.	A:0:C:60:G:0:T:10:N:0:O:1	.	0,53,10,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:2:G:0:T:64:N:0:O:1	.	0,43,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5787	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,51,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:82:N:0:O:1	.	2,29,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5947	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:20:N:0:O:2	.	0,12,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	5974	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,10,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	5989	A	C	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:1:G:0:T:0:N:0:O:0	.	1,13,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6021	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,15,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6047	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	1,14,0,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6101	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:21:T:1:N:0:O:0	.	0,13,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:1:C:133:G:0:T:3:N:0:O:2	.	0,91,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:0:C:151:G:0:T:5:N:0:O:1	.	0,91,5,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:4:C:0:G:121:T:2:N:0:O:4	.	4,30,0,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6786	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,16,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6816	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:23:T:0:N:0:O:2	.	1,10,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6834	T	G	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:1:T:25:N:0:O:0	.	1,8,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6852	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	1,10,0,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6864	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,6,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6958	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:24:N:0:O:1	.	0,13,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	6999	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.08695652173913043	.	A:20:C:0:G:2:T:0:N:0:O:1	.	2,7,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7055	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,28,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	7166	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,29,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7212	G	C	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:38:T:0:N:0:O:0	.	1,19,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:43:C:0:G:1:T:0:N:0:O:3	.	1,21,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7220	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,22,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7221	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	0,21,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7222	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,23,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7239	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:0:C:44:G:0:T:2:N:0:O:3	.	1,25,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:42:G:0:T:1:N:0:O:1	.	0,27,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,19,0,7	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7320	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:49:T:0:N:0:O:0	.	1,23,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:75:T:0:N:0:O:0	.	3,18,0,60	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:94:G:0:T:3:N:0:O:2	.	3,42,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7780	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:0:G:2:T:75:N:0:O:2	.	0,28,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7811	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:73:G:0:T:2:N:0:O:0	.	0,28,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:34:G:0:T:1:N:0:O:2	.	1,24,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:39:N:0:O:1	.	0,20,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7823	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,26,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:0:C:3:G:0:T:64:N:0:O:1	.	0,30,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8068	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:5:G:0:T:127:N:0:O:0	.	3,70,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	8166	T	G	T	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.023923444976076555	.	A:0:C:1:G:5:T:203:N:0:O:0	.	2,103,3,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8389	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,7,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	8408	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:27:T:0:N:0:O:1	.	1,8,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8419	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8443	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,9,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8461	T	A	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:0:T:24:N:0:O:0	.	1,9,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8462	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:24:T:0:N:0:O:1	.	1,11,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8463	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:24:G:0:T:1:N:0:O:1	.	0,10,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8540	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	0,8,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8541	C	A	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:19:G:0:T:0:N:0:O:0	.	0,7,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8546	A	T	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:0:T:1:N:0:O:0	.	0,8,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8571	G	T	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:25:T:1:N:0:O:0	.	0,11,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:100:G:0:T:4:N:0:O:1	.	0,65,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	1.0	.	A:0:C:0:G:0:T:127:N:0:O:0	.	63,63,64,64	209.237	1186.0	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	8851	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:68:T:0:N:0:O:0	.	2,51,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.12	.	A:9:C:0:G:65:T:0:N:0:O:1	.	9,14,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9028	T	G	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:0:G:2:T:72:N:0:O:0	.	1,25,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:5:C:0:G:0:T:75:N:0:O:5	.	5,31,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:77:G:1:T:2:N:0:O:4	.	0,29,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:0:G:126:T:3:N:0:O:1	.	2,70,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.06060606060606061	.	A:0:C:93:G:0:T:6:N:0:O:0	.	0,60,6,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:116:T:3:N:0:O:1	.	1,59,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.025210084033613446	.	A:0:C:229:G:0:T:6:N:0:O:3	.	0,99,6,139	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:1:C:134:G:0:T:3:N:0:O:1	.	0,115,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:88:G:0:T:2:N:0:O:17	.	0,69,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,54,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9835	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:63:N:0:O:0	.	0,34,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9949	A	T	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:62:C:0:G:0:T:2:N:0:O:2	.	1,41,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:38:T:0:N:0:O:1	.	1,14,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:44:G:0:T:2:N:0:O:7	.	2,21,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10030	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:63:G:0:T:2:N:0:O:0	.	2,39,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10134	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:0:C:4:G:0:T:133:N:0:O:22	.	0,61,4,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10148	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:104:G:0:T:3:N:0:O:3	.	1,55,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:0:T:113:N:0:O:3	.	0,63,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10232	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:131:G:0:T:3:N:0:O:2	.	1,72,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:94:N:0:O:5	.	0,51,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,59,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10369	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,62,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.027649769585253458	.	A:6:C:0:G:210:T:0:N:0:O:1	.	6,86,0,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:101:G:0:T:4:N:0:O:5	.	0,70,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	10519	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:133:G:0:T:3:N:0:O:2	.	2,71,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:97:T:2:N:0:O:1	.	2,52,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.034482758620689655	.	A:0:C:8:G:0:T:222:N:0:O:2	.	0,130,8,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:86:N:0:O:1	.	0,57,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:103:N:0:O:1	.	1,51,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.06140350877192982	.	A:0:C:0:G:7:T:101:N:0:O:6	.	0,52,7,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,70,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	11193	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:87:G:0:T:2:N:0:O:5	.	0,67,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11301	T	C	T	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:0:C:4:G:0:T:122:N:0:O:29	.	0,93,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11448	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:96:C:0:G:2:T:0:N:0:O:5	.	2,58,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11565	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	1,44,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	98	.	20	.	0.04081632653061224	.	A:0:C:93:G:0:T:4:N:0:O:1	.	0,52,4,46	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11670	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	1,48,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.01818181818181818	.	A:2:C:0:G:137:T:4:N:0:O:77	.	1,62,3,158	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:63:C:0:G:4:T:0:N:0:O:0	.	1,40,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	12053	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:89:G:0:T:3:N:0:O:2	.	0,45,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:65:G:0:T:4:N:0:O:26	.	0,76,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.021052631578947368	.	A:186:C:0:G:4:T:0:N:0:O:0	.	4,60,0,130	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12241	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	0,53,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:90:G:0:T:2:N:0:O:8	.	1,41,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	12639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:1:C:92:G:0:T:2:N:0:O:0	.	1,43,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:78:C:0:G:0:T:2:N:0:O:3	.	2,29,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:72:C:0:G:3:T:0:N:0:O:5	.	3,31,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:68:G:0:T:4:N:0:O:1	.	0,53,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12698	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:2:T:0:N:0:O:2	.	1,45,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:95:C:0:G:4:T:0:N:0:O:3	.	4,22,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13417	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,42,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:0:C:63:G:0:T:3:N:0:O:3	.	0,59,3,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.06593406593406594	.	A:6:C:0:G:80:T:0:N:0:O:5	.	6,33,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13491	C	A	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:71:G:0:T:0:N:0:O:3	.	2,46,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13492	C	A	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:71:G:0:T:0:N:0:O:0	.	2,47,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	2,62,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,39,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.04	.	A:5:C:111:G:0:T:0:N:0:O:9	.	5,68,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:115:T:0:N:0:O:23	.	3,69,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:125:T:0:N:0:O:4	.	3,33,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.03546099290780142	.	A:0:C:136:G:0:T:5:N:0:O:0	.	0,77,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:110:C:0:G:0:T:3:N:0:O:6	.	0,82,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14108	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:92:T:0:N:0:O:2	.	2,33,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14267	C	T	C	12	misc mixed variant	Check	False	False	True	215	.	20	.	0.31627906976744186	.	A:0:C:143:G:0:T:68:N:0:O:4	.	45,106,23,109	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	14550	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:100:C:0:G:3:T:0:N:0:O:3	.	3,51,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14614	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	2,47,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:87:T:0:N:0:O:0	.	4,38,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:92:G:0:T:2:N:0:O:4	.	1,63,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14901	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,23,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14910	T	A	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:0:T:39:N:0:O:2	.	0,25,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14911	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:0:T:1:N:0:O:0	.	1,25,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:39:N:0:O:2	.	0,23,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14934	A	T	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:36:C:0:G:0:T:1:N:0:O:1	.	0,20,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:40:G:0:T:1:N:0:O:0	.	0,25,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14975	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:40:G:0:T:1:N:0:O:0	.	0,29,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	14990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:49:C:0:G:1:T:0:N:0:O:2	.	1,31,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15052	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	1,24,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	1,20,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.058823529411764705	.	A:2:C:0:G:32:T:0:N:0:O:0	.	2,14,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15082	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:1:T:0:N:0:O:0	.	1,21,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15083	T	A	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:0:T:41:N:0:O:0	.	1,21,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:24:G:0:T:1:N:0:O:1	.	0,21,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15107	C	G	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:1:T:0:N:0:O:0	.	0,19,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15138	G	C	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:44:T:0:N:0:O:0	.	1,24,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15190	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:33:T:0:N:0:O:1	.	1,17,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15203	T	C	T	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:0:C:4:G:0:T:156:N:0:O:23	.	2,100,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,26,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:1:G:113:T:0:N:0:O:0	.	3,76,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15950	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.014492753623188406	.	A:1:C:0:G:0:T:44:N:0:O:24	.	0,41,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	15952	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	51	.	20	.	0.27450980392156865	.	A:0:C:37:G:0:T:14:N:0:O:0	.	1,17,13,34	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:0:C:81:G:0:T:6:N:0:O:1	.	0,50,6,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	16198	T	G	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:1:T:44:N:0:O:0	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16203	T	G	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:1:T:43:N:0:O:0	.	0,22,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,17,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16228	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:49:T:0:N:0:O:0	.	1,26,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16238	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	0,23,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16248	T	A	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:0:T:39:N:0:O:1	.	1,18,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16250	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	1,18,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16256	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	0,12,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16263	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,16,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16264	T	G	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:0:G:1:T:29:N:0:O:0	.	0,19,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:27:C:0:G:0:T:1:N:0:O:2	.	1,12,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:1:T:0:N:0:O:1	.	1,9,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16272	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:38:N:0:O:1	.	0,20,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16273	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.047619047619047616	.	A:0:C:2:G:0:T:39:N:0:O:1	.	1,23,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16303	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:44:G:0:T:1:N:0:O:0	.	0,21,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16310	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	1,24,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:43:G:0:T:1:N:0:O:1	.	0,22,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16342	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:0:T:45:N:0:O:0	.	0,24,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16368	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,18,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:38:G:0:T:1:N:0:O:0	.	0,19,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	16397	G	C	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:46:T:0:N:0:O:1	.	0,21,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16401	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:0:T:46:N:0:O:0	.	0,24,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16409	C	G	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:1:T:0:N:0:O:0	.	0,14,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16435	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	1,15,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16480	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.023529411764705882	.	A:0:C:164:G:0:T:4:N:0:O:2	.	2,82,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:0:G:92:T:4:N:0:O:2	.	4,41,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16585	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:104:T:0:N:0:O:3	.	3,47,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16616	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	0,36,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:89:G:0:T:5:N:0:O:0	.	0,58,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16691	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,44,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:72:T:0:N:0:O:4	.	2,15,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.046153846153846156	.	A:0:C:60:G:0:T:3:N:0:O:2	.	0,43,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:98:T:2:N:0:O:2	.	2,11,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:0:C:0:G:5:T:95:N:0:O:9	.	0,34,5,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:3:T:0:N:0:O:0	.	1,26,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:82:G:0:T:2:N:0:O:2	.	0,31,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17009	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:0:C:4:G:0:T:126:N:0:O:0	.	0,34,4,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:0:G:2:T:0:N:0:O:0	.	0,18,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.03333333333333333	.	A:215:C:0:G:8:T:0:N:0:O:17	.	8,74,0,166	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.023696682464454975	.	A:5:C:0:G:195:T:0:N:0:O:11	.	5,38,0,173	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:0:T:74:N:0:O:3	.	2,12,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:100:C:0:G:4:T:0:N:0:O:0	.	4,43,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,28,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17726	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:131:T:0:N:0:O:2	.	3,42,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	107	.	20	.	0.04672897196261682	.	A:0:C:97:G:0:T:5:N:0:O:5	.	0,49,5,58	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17747	C	T	T	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:0:G:0:T:124:N:0:O:0	.	38,38,86,86	210.0	1177.9	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	17753	G	T	N	2	allele in negative control	Alarm	False	False	False	129	.	20	.	0.023255813953488372	.	A:0:C:0:G:121:T:3:N:0:O:5	.	0,54,3,75	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17796	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:133:N:0:O:0	.	0,56,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	17858	A	G	G	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:0:G:114:T:0:N:0:O:0	.	43,43,71,71	554.466	1158.0	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	18060	C	T	T	12	misc mixed variant	Check	False	True	True	107	.	20	.	0.7476635514018691	.	A:0:C:1:G:0:T:80:N:0:O:26	.	49,75,31,32	54.466	978.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	18177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:1:C:2:G:0:T:87:N:0:O:2	.	0,45,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18267	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:82:G:0:T:2:N:0:O:3	.	0,43,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:4:C:0:G:140:T:0:N:0:O:6	.	4,21,0,129	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18335	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:0:T:3:N:0:O:0	.	0,38,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:121:G:0:T:5:N:0:O:0	.	1,72,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18363	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:137:T:0:N:0:O:0	.	2,59,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:96:G:0:T:2:N:0:O:8	.	2,19,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18441	C	A	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:144:G:0:T:0:N:0:O:0	.	3,57,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18688	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	2,49,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18691	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:2:G:0:T:98:N:0:O:6	.	1,59,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:74:C:0:G:2:T:0:N:0:O:1	.	2,40,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,43,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	1,25,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	18918	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:101:N:0:O:2	.	0,55,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:135:G:0:T:3:N:0:O:2	.	0,84,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	19072	G	T	T	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	0.9426229508196722	.	A:0:C:0:G:0:T:115:N:0:O:7	.	47,54,68,68	210.0	2581.5	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	19118	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:83:G:0:T:2:N:0:O:4	.	0,35,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	19594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:0:C:142:G:0:T:3:N:0:O:7	.	0,64,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	19628	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:134:C:0:G:3:T:0:N:0:O:0	.	1,61,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:4:C:0:G:0:T:133:N:0:O:32	.	0,65,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:0:T:3:N:0:O:0	.	0,62,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20205	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:33:N:0:O:2	.	0,19,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:34:T:0:N:0:O:1	.	1,12,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.04878048780487805	.	A:2:C:0:G:37:T:0:N:0:O:2	.	2,15,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20242	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:40:G:0:T:1:N:0:O:0	.	1,15,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:0:G:1:T:27:N:0:O:0	.	1,9,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20269	G	T	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:31:T:1:N:0:O:0	.	1,11,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20270	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:31:G:0:T:1:N:0:O:1	.	0,11,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	20278	G	C	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:31:T:0:N:0:O:0	.	1,10,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20315	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:24:N:0:O:1	.	0,15,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20316	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:26:G:0:T:1:N:0:O:1	.	0,15,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	20330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:35:C:0:G:1:T:0:N:0:O:1	.	0,15,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20406	T	A	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:0:T:23:N:0:O:0	.	1,14,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	1,15,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20408	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	1,15,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20413	T	A	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:0:T:32:N:0:O:0	.	1,12,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:95:T:0:N:0:O:5	.	2,62,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:106:T:0:N:0:O:5	.	3,50,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20769	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:0:T:93:N:0:O:8	.	1,51,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:76:G:0:T:2:N:0:O:7	.	2,31,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	1,15,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:0:G:127:T:0:N:0:O:8	.	1,39,3,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21613	T	A	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:0:G:0:T:19:N:0:O:0	.	0,14,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:93:G:0:T:2:N:0:O:6	.	1,34,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.08333333333333333	.	A:118:C:0:G:11:T:0:N:0:O:3	.	11,59,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.058394160583941604	.	A:8:C:0:G:125:T:0:N:0:O:4	.	8,62,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21891	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:0:T:113:N:0:O:4	.	0,66,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21892	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:97:C:0:G:3:T:1:N:0:O:6	.	1,52,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	21986	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	0,56,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22036	A	G	N	2	allele in negative control	Alarm	False	False	False	133	.	20	.	0.03007518796992481	.	A:129:C:0:G:4:T:0:N:0:O:0	.	4,60,0,73	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22124	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:117:C:0:G:0:T:3:N:0:O:1	.	1,84,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.01675977653631285	.	A:137:C:0:G:3:T:0:N:0:O:39	.	3,86,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:92:T:0:N:0:O:0	.	4,48,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:3:T:94:N:0:O:0	.	3,35,0,62	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22251	C	T	N	2	allele in negative control	Alarm	False	False	False	76	.	20	.	0.02631578947368421	.	A:0:C:74:G:0:T:2:N:0:O:0	.	0,49,2,27	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,64,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:93:C:0:G:3:T:0:N:0:O:4	.	3,23,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	2,19,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23034	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:109:G:0:T:3:N:0:O:28	.	0,77,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.018867924528301886	.	A:0:C:131:G:0:T:3:N:0:O:25	.	1,101,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	1,83,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:139:C:0:G:5:T:0:N:0:O:0	.	1,61,4,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:114:G:0:T:3:N:0:O:1	.	0,63,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:1:G:88:T:0:N:0:O:4	.	3,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23661	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:94:T:2:N:0:O:0	.	0,44,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:104:C:0:G:3:T:0:N:0:O:4	.	3,39,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.20754716981132076	.	A:0:C:84:G:0:T:22:N:0:O:0	.	0,72,22,34	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:4:G:0:T:104:N:0:O:0	.	0,72,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:145:C:0:G:0:T:3:N:0:O:0	.	3,80,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:0:G:0:T:68:N:0:O:0	.	3,33,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:5:C:0:G:96:T:0:N:0:O:0	.	5,27,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:89:G:0:T:4:N:0:O:0	.	0,69,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.017543859649122806	.	A:0:C:47:G:0:T:1:N:0:O:9	.	0,50,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:4:C:0:G:84:T:0:N:0:O:1	.	4,16,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.09411764705882353	.	A:8:C:0:G:76:T:0:N:0:O:1	.	8,13,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:2:C:0:G:98:T:0:N:0:O:13	.	0,52,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:97:C:0:G:0:T:2:N:0:O:7	.	2,73,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:93:C:3:G:0:T:0:N:0:O:1	.	2,52,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24694	A	T	T	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	0.9658119658119658	.	A:1:C:0:G:0:T:113:N:0:O:3	.	48,52,65,65	210.0	1895.3	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	24719	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:1:C:71:G:0:T:3:N:0:O:6	.	0,69,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:57:G:1:T:2:N:0:O:5	.	1,58,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24813	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:138:C:0:G:3:T:0:N:0:O:0	.	1,72,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	0,64,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	24938	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	1,64,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25152	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:92:N:0:O:1	.	1,61,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:105:T:0:N:0:O:0	.	4,61,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:0:G:5:T:105:N:0:O:1	.	5,23,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25460	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,43,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	25488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,34,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25511	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:97:G:0:T:3:N:0:O:5	.	1,57,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:92:G:0:T:2:N:0:O:14	.	2,42,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25610	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:87:N:0:O:1	.	1,47,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25698	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:0:T:2:N:0:O:0	.	1,41,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25704	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	2,51,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:63:C:3:G:0:T:0:N:0:O:6	.	1,49,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:84:G:0:T:3:N:0:O:0	.	0,58,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25840	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	2,72,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,28,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26017	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:92:N:0:O:2	.	2,50,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26081	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	0,73,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26088	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:140:G:0:T:3:N:0:O:2	.	3,80,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	26224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812154	.	A:0:C:175:G:0:T:4:N:0:O:2	.	1,105,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	1,47,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,35,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	3,28,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:101:T:0:N:0:O:1	.	4,29,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.032679738562091505	.	A:0:C:148:G:0:T:5:N:0:O:0	.	0,125,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:0:C:4:G:0:T:190:N:0:O:0	.	0,131,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26556	G	A	G	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.022321428571428572	.	A:5:C:0:G:219:T:0:N:0:O:0	.	5,87,0,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:126:C:1:G:0:T:3:N:0:O:2	.	1,75,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:69:N:0:O:1	.	0,21,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26623	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	2,71,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:75:T:0:N:0:O:0	.	3,9,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26744	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:124:N:0:O:0	.	0,61,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26746	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:99:T:3:N:0:O:0	.	0,67,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	26912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	2,30,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:77:C:0:G:3:T:0:N:0:O:8	.	3,39,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	26991	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,55,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:72:T:0:N:0:O:0	.	4,21,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.16666666666666666	.	A:0:C:75:G:0:T:15:N:0:O:0	.	0,62,15,28	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:5:G:0:T:99:N:0:O:0	.	0,68,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.05	.	A:0:C:126:G:0:T:7:N:0:O:7	.	0,83,7,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:132:C:0:G:0:T:3:N:0:O:1	.	3,74,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27525	A	C	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:1:G:0:T:0:N:0:O:0	.	1,28,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27528	A	C	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:49:C:1:G:0:T:0:N:0:O:4	.	1,36,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27529	T	A	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:0:T:44:N:0:O:0	.	1,26,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,23,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27589	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:48:T:0:N:0:O:0	.	1,22,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27600	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:49:G:0:T:1:N:0:O:1	.	1,29,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:1:T:0:N:0:O:1	.	1,23,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27624	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:45:C:0:G:2:T:0:N:0:O:0	.	2,27,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27627	T	A	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:0:T:47:N:0:O:0	.	1,33,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27628	G	T	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:45:T:1:N:0:O:1	.	1,31,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:39:G:0:T:0:N:0:O:1	.	1,23,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:1:G:0:T:0:N:0:O:0	.	1,19,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27744	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,15,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27784	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:0:T:1:N:0:O:1	.	0,27,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	27903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:101:G:0:T:4:N:0:O:10	.	0,73,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	28056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	2,39,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	275	.	20	.	0.9927272727272727	.	A:0:C:273:G:1:T:0:N:0:O:1	.	157,158,116,117	195.921	1391.5	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	28325	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.06201550387596899	.	A:0:C:0:G:121:T:8:N:0:O:0	.	6,96,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:105:G:0:T:0:N:0:O:12	.	4,92,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.07142857142857142	.	A:0:C:52:G:0:T:4:N:0:O:0	.	0,31,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:90:T:0:N:0:O:1	.	3,8,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:79:G:0:T:3:N:0:O:0	.	0,30,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.03424657534246575	.	A:0:C:134:G:0:T:5:N:0:O:7	.	2,131,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29030	G	T	G	16	ignore low frequency variant	Pass	False	False	True	283	.	20	.	0.04240282685512368	.	A:0:C:0:G:266:T:12:N:0:O:5	.	3,103,9,180	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:90:T:0:N:0:O:2	.	3,6,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,45,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:4:C:0:G:130:T:0:N:0:O:1	.	4,60,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:141:G:0:T:3:N:0:O:3	.	2,76,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	29312	A	C	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:139:C:3:G:0:T:0:N:0:O:1	.	2,69,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29374	G	A	G	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:4:C:0:G:147:T:0:N:0:O:1	.	1,78,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:71:C:0:G:2:T:0:N:0:O:1	.	0,40,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29389	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:60:C:0:G:2:T:0:N:0:O:2	.	2,21,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:55:C:0:G:2:T:0:N:0:O:0	.	2,17,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:79:C:0:G:4:T:0:N:0:O:3	.	4,20,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:84:T:0:N:0:O:7	.	3,24,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:129:C:4:G:0:T:0:N:0:O:1	.	0,68,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,57,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29581	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:103:N:0:O:1	.	1,65,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29595	T	A	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.0	.	A:0:C:0:G:0:T:140:N:0:O:0	.	0,77,0,63	4.708	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29602	T	G	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.0070921985815602835	.	A:0:C:0:G:1:T:137:N:0:O:3	.	0,86,1,55	12.63	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	29608	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.015151515151515152	.	A:0:C:114:G:0:T:2:N:0:O:16	.	0,79,2,53	5.538	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00149	artic-pipeline	NB01	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	307	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00149	artic-pipeline	NB01	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	1	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	76	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:47:N:0:O:2	.	0,2,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.11904761904761904	.	A:0:C:37:G:0:T:5:N:0:O:0	.	0,3,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	60	.	20	.	0.9666666666666667	.	A:0:C:0:G:0:T:58:N:0:O:2	.	3,5,55,55	279.237	1424.8	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	304	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:54:G:0:T:2:N:0:O:0	.	0,1,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	0,54,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:91:C:0:G:2:T:0:N:0:O:3	.	2,22,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	620	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:109:G:0:T:3:N:0:O:2	.	1,51,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1018	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,56,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	0.9928571428571429	.	A:0:C:1:G:0:T:139:N:0:O:0	.	93,93,46,47	210.0	1597.0	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:4:C:122:G:0:T:0:N:0:O:6	.	4,85,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:103:C:0:G:0:T:3:N:0:O:13	.	3,93,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:73:G:0:T:2:N:0:O:1	.	2,58,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:0:C:69:G:0:T:7:N:0:O:8	.	0,52,7,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:2:C:0:G:49:T:0:N:0:O:2	.	2,13,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:78:G:0:T:2:N:0:O:6	.	0,64,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:88:N:0:O:2	.	0,63,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:0:T:103:N:0:O:0	.	1,19,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1390	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:98:N:0:O:0	.	0,28,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.07142857142857142	.	A:0:C:88:G:0:T:7:N:0:O:3	.	0,34,7,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:0:G:116:T:4:N:0:O:3	.	1,31,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1489	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:134:G:0:T:3:N:0:O:7	.	0,39,3,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1497	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:96:N:0:O:1	.	0,38,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:90:C:0:G:4:T:0:N:0:O:3	.	3,35,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	2184	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:119:C:0:G:3:T:0:N:0:O:3	.	3,46,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.07368421052631578	.	A:7:C:0:G:88:T:0:N:0:O:0	.	7,20,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	2200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,61,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	2300	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:4:G:0:T:117:N:0:O:0	.	0,64,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:3:G:0:T:0:N:0:O:1	.	3,43,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	2557	A	G	A	16	ignore low frequency variant	Pass	False	False	True	275	.	20	.	0.02181818181818182	.	A:268:C:0:G:6:T:0:N:0:O:1	.	6,148,0,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.01948051948051948	.	A:142:C:0:G:3:T:0:N:0:O:9	.	3,96,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:131:G:0:T:3:N:0:O:2	.	0,116,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	124	.	20	.	0.7661290322580645	.	A:0:C:0:G:0:T:95:N:0:O:29	.	38,67,57,57	131.455	1330.7	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:134:G:0:T:0:N:0:O:1	.	0,46,4,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:5:G:0:T:103:N:0:O:0	.	0,44,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:88:T:2:N:0:O:13	.	0,55,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	3287	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:0:G:139:T:3:N:0:O:3	.	3,63,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	0,67,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.05357142857142857	.	A:53:C:0:G:0:T:3:N:0:O:0	.	3,24,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:112:C:0:G:3:T:0:N:0:O:1	.	2,38,1,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:0:C:77:G:0:T:5:N:0:O:0	.	0,59,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	0,42,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:45:G:0:T:1:N:0:O:4	.	0,32,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.026200873362445413	.	A:0:C:0:G:219:T:6:N:0:O:4	.	0,144,6,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.028409090909090908	.	A:5:C:0:G:167:T:0:N:0:O:4	.	0,103,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.05309734513274336	.	A:0:C:97:G:0:T:6:N:0:O:10	.	0,60,6,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.05309734513274336	.	A:100:C:0:G:0:T:6:N:0:O:7	.	0,79,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4533	A	G	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:143:C:0:G:3:T:0:N:0:O:0	.	3,70,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4572	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:135:C:0:G:3:T:0:N:0:O:0	.	3,60,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:117:G:0:T:3:N:0:O:1	.	0,78,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4817	G	T	G	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.023952095808383235	.	A:0:C:0:G:162:T:4:N:0:O:1	.	0,87,4,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	4912	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:138:C:0:G:3:T:0:N:0:O:2	.	3,68,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:0:T:2:N:0:O:1	.	2,20,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	2,26,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:0:T:90:N:0:O:0	.	2,25,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.09876543209876543	.	A:0:C:72:G:0:T:8:N:0:O:1	.	0,66,8,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	1,43,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5825	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:0:T:2:N:0:O:1	.	1,41,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:102:N:0:O:3	.	3,67,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5852	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:112:C:0:G:0:T:3:N:0:O:1	.	3,73,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5866	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:122:G:0:T:3:N:0:O:4	.	0,86,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:116:T:0:N:0:O:16	.	1,66,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	0,65,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:82:G:0:T:2:N:0:O:9	.	0,82,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	0,51,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.09876543209876543	.	A:0:C:72:G:0:T:8:N:0:O:1	.	0,62,8,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:96:G:0:T:3:N:0:O:2	.	0,59,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6472	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:105:G:0:T:3:N:0:O:4	.	0,57,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:112:G:0:T:3:N:0:O:5	.	1,96,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	6630	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:92:N:0:O:6	.	2,57,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:125:G:0:T:3:N:0:O:1	.	0,89,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:118:G:0:T:3:N:0:O:0	.	0,83,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:124:G:0:T:3:N:0:O:6	.	1,90,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:0:C:187:G:0:T:4:N:0:O:7	.	2,139,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,51,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:84:C:0:G:0:T:3:N:0:O:1	.	0,70,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	7213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:105:T:0:N:0:O:0	.	4,69,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	7392	C	T	N	2	allele in negative control	Alarm	False	False	False	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,50,2,30	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	7594	C	T	N	2	allele in negative control	Alarm	False	False	False	102	.	20	.	0.0392156862745098	.	A:0:C:77:G:0:T:4:N:0:O:21	.	0,87,4,15	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	7615	G	A	N	2	allele in negative control	Alarm	False	False	False	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:87:T:0:N:0:O:4	.	0,63,2,30	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:106:G:0:T:4:N:0:O:0	.	0,52,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	8247	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:133:G:0:T:3:N:0:O:1	.	0,64,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.16363636363636364	.	A:9:C:0:G:45:T:0:N:0:O:1	.	9,12,0,43	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.08247422680412371	.	A:0:C:89:G:0:T:8:N:0:O:0	.	0,54,8,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:92:G:0:T:4:N:0:O:2	.	0,47,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.023622047244094488	.	A:0:C:242:G:0:T:6:N:0:O:6	.	0,101,6,153	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.022988505747126436	.	A:0:C:113:G:0:T:4:N:0:O:57	.	2,94,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.06	.	A:0:C:3:G:0:T:47:N:0:O:0	.	2,46,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	9633	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:1:T:71:N:0:O:1	.	0,43,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:76:G:0:T:3:N:0:O:14	.	0,56,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	9794	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:0:G:118:T:0:N:0:O:26	.	1,55,2,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:2:C:0:G:61:T:0:N:0:O:0	.	2,15,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:4:G:0:T:96:N:0:O:0	.	0,72,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.022123893805309734	.	A:5:C:0:G:219:T:0:N:0:O:2	.	5,47,0,179	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:95:G:0:T:3:N:0:O:1	.	0,43,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:113:C:0:G:3:T:0:N:0:O:1	.	3,27,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:0:G:88:T:4:N:0:O:0	.	4,31,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	10686	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:106:G:0:T:3:N:0:O:1	.	0,45,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.03211009174311927	.	A:0:C:7:G:0:T:210:N:0:O:1	.	0,111,7,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:90:N:0:O:8	.	0,75,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:90:G:0:T:2:N:0:O:2	.	0,61,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:0:G:103:T:4:N:0:O:1	.	4,60,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	11480	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	0,67,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	84	.	20	.	0.16666666666666666	.	A:0:C:68:G:0:T:14:N:0:O:2	.	0,53,14,31	.	.	.	.	allele in NTC	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:0:G:107:T:3:N:0:O:1	.	0,42,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,37,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:73:G:0:T:3:N:0:O:15	.	0,52,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	231	.	20	.	0.021645021645021644	.	A:0:C:225:G:0:T:5:N:0:O:1	.	0,108,5,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:67:T:0:N:0:O:21	.	0,73,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:98:T:0:N:0:O:7	.	4,44,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:78:C:0:G:2:T:1:N:0:O:3	.	2,28,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:62:G:0:T:3:N:0:O:1	.	0,37,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:84:G:0:T:2:N:0:O:3	.	0,21,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:106:C:0:G:3:T:0:N:0:O:3	.	3,27,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,42,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:113:G:1:T:3:N:0:O:1	.	0,61,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	13446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:92:G:0:T:3:N:0:O:2	.	0,62,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:0:C:63:G:0:T:3:N:0:O:1	.	0,62,3,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:90:T:0:N:0:O:11	.	3,48,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.01694915254237288	.	A:2:C:0:G:0:T:96:N:0:O:20	.	2,65,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:4:C:103:G:0:T:0:N:0:O:10	.	4,64,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.018404907975460124	.	A:3:C:0:G:126:T:0:N:0:O:34	.	3,93,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	3,48,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:66:G:0:T:2:N:0:O:8	.	0,8,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:112:G:0:T:3:N:0:O:1	.	0,58,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:72:T:0:N:0:O:0	.	3,27,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:0:G:2:T:0:N:0:O:0	.	1,21,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:77:C:0:G:2:T:0:N:0:O:3	.	1,38,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14005	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	2,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,45,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,32,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:117:G:0:T:3:N:0:O:0	.	0,56,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,44,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	101	.	20	.	1.0	.	A:0:C:0:G:0:T:101:N:0:O:0	.	35,35,66,66	542.029	1127.9	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:80:T:0:N:0:O:0	.	4,43,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14718	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:86:T:2:N:0:O:2	.	0,60,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	14734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,56,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,74,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14829	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:102:T:4:N:0:O:0	.	3,82,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	14977	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:107:C:0:G:3:T:0:N:0:O:4	.	3,59,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	15086	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:112:T:0:N:0:O:0	.	4,56,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	15413	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:115:C:0:G:3:T:0:N:0:O:5	.	3,61,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.15555555555555556	.	A:0:C:37:G:0:T:7:N:0:O:1	.	0,18,7,27	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	16013	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:1:N:0:O:0	.	2,27,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:92:G:0:T:4:N:0:O:2	.	0,55,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.07462686567164178	.	A:0:C:62:G:0:T:5:N:0:O:0	.	0,51,5,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:87:T:0:N:0:O:2	.	2,42,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:66:T:0:N:0:O:4	.	2,15,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16722	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:0:T:2:N:0:O:1	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:83:C:0:G:3:T:0:N:0:O:1	.	3,34,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:78:G:0:T:3:N:0:O:5	.	0,65,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:87:T:0:N:0:O:1	.	3,13,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:1:C:0:G:96:T:2:N:0:O:0	.	2,23,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:0:C:0:G:5:T:107:N:0:O:6	.	1,55,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:2:G:0:T:0:N:0:O:1	.	2,34,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.020100502512562814	.	A:4:C:0:G:184:T:0:N:0:O:11	.	4,57,0,142	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:69:C:0:G:2:T:0:N:0:O:2	.	2,15,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.08333333333333333	.	A:6:C:0:G:0:T:65:N:0:O:1	.	6,22,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17201	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:0:T:90:N:0:O:5	.	2,45,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:99:C:0:G:5:T:0:N:0:O:0	.	5,53,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.06315789473684211	.	A:0:C:87:G:0:T:6:N:0:O:2	.	0,53,6,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:106:T:0:N:0:O:1	.	3,29,1,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:0:C:82:G:0:T:4:N:0:O:0	.	0,48,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	0,36,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	166	.	20	.	0.030120481927710843	.	A:0:C:151:G:0:T:5:N:0:O:10	.	0,84,5,82	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	61	.	20	.	0.11475409836065574	.	A:0:C:54:G:0:T:7:N:0:O:0	.	0,37,7,24	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	82	.	20	.	0.08536585365853659	.	A:66:C:0:G:0:T:7:N:0:O:9	.	0,34,7,48	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:79:T:0:N:0:O:0	.	0,55,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	18267	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:77:G:0:T:3:N:0:O:2	.	0,35,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:144:G:0:T:3:N:0:O:0	.	0,99,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:91:N:0:O:0	.	1,32,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	18880	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,27,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.02304147465437788	.	A:0:C:207:G:0:T:5:N:0:O:5	.	0,127,5,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:2:T:0:N:0:O:0	.	2,18,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.09375	.	A:0:C:29:G:0:T:3:N:0:O:0	.	0,24,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	19519	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:2:G:0:T:56:N:0:O:0	.	0,25,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	19554	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:0:C:49:G:0:T:1:N:0:O:4	.	0,23,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:3:G:0:T:120:N:0:O:5	.	0,63,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:0:C:0:G:2:T:38:N:0:O:0	.	0,22,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,47,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	20076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:3:T:0:N:0:O:0	.	3,47,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	20133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:96:G:0:T:3:N:0:O:5	.	0,46,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	20755	A	C	C	17	accept high frequency variant	Pass	False	True	True	227	.	20	.	0.9955947136563876	.	A:0:C:226:G:0:T:0:N:0:O:1	.	153,154,73,73	280.0	3271.4	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:114:G:0:T:3:N:0:O:16	.	3,58,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:4:C:0:G:113:T:0:N:0:O:0	.	4,46,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:0:G:2:T:60:N:0:O:0	.	1,11,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.1134020618556701	.	A:0:C:0:G:82:T:11:N:0:O:4	.	0,64,11,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:103:T:0:N:0:O:1	.	3,44,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:0:C:2:G:0:T:31:N:0:O:18	.	0,28,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,49,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,20,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:128:T:0:N:0:O:4	.	3,59,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,35,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:95:N:0:O:0	.	2,32,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:2:G:0:T:0:N:0:O:0	.	2,59,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21654	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:94:G:0:T:2:N:0:O:3	.	0,64,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.05084745762711865	.	A:0:C:106:G:0:T:6:N:0:O:6	.	5,38,1,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:119:G:0:T:3:N:0:O:4	.	0,94,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	21892	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:133:C:0:G:3:T:1:N:0:O:3	.	3,72,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	21984	T	G	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:3:T:113:N:0:O:8	.	2,50,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	156	.	20	.	0.02564102564102564	.	A:0:C:0:G:4:T:152:N:0:O:0	.	4,74,0,82	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	23237	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:120:N:0:O:0	.	0,64,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	23263	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:99:C:0:G:3:T:0:N:0:O:1	.	3,29,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	0.9541984732824428	.	A:0:C:0:G:125:T:0:N:0:O:6	.	46,52,79,79	66.227	1539.1	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:97:T:0:N:0:O:7	.	3,39,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	23618	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.13592233009708737	.	A:0:C:88:G:0:T:14:N:0:O:1	.	0,72,14,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:0:G:0:T:59:N:0:O:1	.	2,22,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.07291666666666667	.	A:7:C:0:G:88:T:0:N:0:O:1	.	7,25,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24237	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,48,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.07	.	A:7:C:0:G:92:T:0:N:0:O:1	.	7,20,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	2,13,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24321	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:84:C:3:G:0:T:0:N:0:O:0	.	1,43,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.046153846153846156	.	A:6:C:124:G:0:T:0:N:0:O:0	.	6,70,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:126:C:1:G:0:T:4:N:0:O:7	.	4,105,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.05228758169934641	.	A:0:C:140:G:0:T:8:N:0:O:5	.	0,100,8,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:0:C:94:G:0:T:5:N:0:O:3	.	3,81,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.0472972972972973	.	A:7:C:0:G:114:T:0:N:0:O:27	.	7,84,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:97:C:0:G:5:T:0:N:0:O:1	.	5,52,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:84:T:0:N:0:O:1	.	0,63,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:0:G:4:T:83:N:0:O:0	.	0,69,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24928	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	0,69,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,78,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25387	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:117:T:0:N:0:O:0	.	3,56,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:128:C:0:G:3:T:0:N:0:O:0	.	3,60,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:1:G:5:T:91:N:0:O:0	.	5,31,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:0:T:3:N:0:O:0	.	3,59,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:86:G:0:T:2:N:0:O:4	.	0,74,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:2:T:65:N:0:O:3	.	2,27,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	0.9918032786885246	.	A:0:C:0:G:0:T:121:N:0:O:1	.	57,58,64,64	210.0	2021.2	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:2:G:0:T:0:N:0:O:0	.	2,32,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:86:G:0:T:2:N:0:O:12	.	1,67,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25775	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,58,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25785	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:99:T:0:N:0:O:1	.	1,71,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:73:C:3:G:0:T:0:N:0:O:4	.	1,59,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25806	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:2:G:0:T:0:N:0:O:1	.	2,61,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,74,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,50,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26132	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:2:G:0:T:0:N:0:O:1	.	0,72,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:3:G:0:T:79:N:0:O:0	.	1,48,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:4:C:0:G:68:T:0:N:0:O:0	.	4,25,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.09032258064516129	.	A:0:C:141:G:0:T:14:N:0:O:0	.	0,125,14,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.03980099502487562	.	A:0:C:8:G:0:T:193:N:0:O:0	.	0,143,8,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:107:C:0:G:4:T:0:N:0:O:0	.	4,52,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:88:G:0:T:2:N:0:O:5	.	0,32,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:93:C:0:G:0:T:2:N:0:O:3	.	2,26,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:6:C:0:G:80:T:0:N:0:O:1	.	6,16,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:89:G:0:T:4:N:0:O:0	.	0,58,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	27103	C	T	N	2	allele in negative control	Alarm	False	False	False	76	.	20	.	0.11842105263157894	.	A:0:C:66:G:0:T:9:N:0:O:1	.	0,56,9,20	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	27213	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:109:G:0:T:3:N:0:O:1	.	0,64,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	27407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,56,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,58,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0410958904109589	.	A:0:C:126:G:0:T:6:N:0:O:14	.	1,68,5,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.037914691943127965	.	A:202:C:0:G:0:T:8:N:0:O:1	.	5,107,3,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:73:C:0:G:2:T:0:N:0:O:5	.	2,40,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	27708	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,64,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	27929	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.1796875	.	A:23:C:0:G:0:T:103:N:0:O:2	.	11,75,12,53	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28122	G	A	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.02617801047120419	.	A:5:C:0:G:185:T:1:N:0:O:0	.	5,79,0,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:0:T:114:N:0:O:7	.	0,74,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28402	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,66,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:91:T:0:N:0:O:0	.	4,37,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28590	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:128:G:0:T:0:N:0:O:6	.	3,69,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28723	T	C	T	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.01968503937007874	.	A:0:C:5:G:0:T:240:N:0:O:9	.	0,119,5,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:86:G:0:T:3:N:0:O:6	.	0,38,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:49:G:0:T:2:N:0:O:2	.	0,23,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28821	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:92:G:0:T:2:N:0:O:3	.	0,31,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:60:G:0:T:3:N:0:O:8	.	0,25,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	28943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:88:G:0:T:2:N:0:O:3	.	0,11,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:114:G:0:T:4:N:0:O:7	.	0,107,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29032	G	T	G	16	ignore low frequency variant	Pass	False	False	True	255	.	20	.	0.027450980392156862	.	A:0:C:0:G:245:T:7:N:0:O:3	.	1,82,6,173	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29047	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:83:N:0:O:1	.	0,66,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,3,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:76:T:0:N:0:O:1	.	3,31,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:77:G:2:T:0:N:0:O:1	.	0,35,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:77:N:0:O:3	.	0,55,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:77:C:0:G:3:T:0:N:0:O:2	.	0,31,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:105:C:0:G:3:T:0:N:0:O:1	.	3,10,0,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29437	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:146:C:0:G:3:T:0:N:0:O:1	.	3,42,0,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.034482758620689655	.	A:139:C:5:G:0:T:0:N:0:O:1	.	0,63,5,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00150	artic-pipeline	NB03	MN908947.3	29739	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:0:C:122:G:0:T:5:N:0:O:3	.	3,83,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	307	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	145	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00150	artic-pipeline	NB03	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	145	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:0:T:40:N:0:O:3	.	0,8,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	110	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,2,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:26:G:0:T:1:N:0:O:3	.	0,5,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:24:N:0:O:1	.	0,6,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	203	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	0,3,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	39	.	20	.	0.9743589743589743	.	A:0:C:0:G:1:T:38:N:0:O:0	.	2,2,36,37	279.237	1226.6	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:0:T:49:N:0:O:0	.	1,1,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:0:C:2:G:0:T:47:N:0:O:0	.	0,8,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:91:T:2:N:0:O:2	.	0,45,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:133:C:0:G:3:T:0:N:0:O:3	.	0,60,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:3:G:0:T:132:N:0:O:0	.	0,57,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	713	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:0:G:95:T:2:N:0:O:0	.	0,31,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	1,17,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:78:T:0:N:0:O:1	.	0,52,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	0,46,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:70:G:0:T:2:N:0:O:0	.	2,57,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:74:G:0:T:5:N:0:O:2	.	0,52,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:2:T:0:N:0:O:0	.	1,35,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:4:C:0:G:95:T:0:N:0:O:29	.	3,62,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:67:C:0:G:3:T:0:N:0:O:0	.	3,51,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:64:T:1:N:0:O:0	.	2,31,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.02857142857142857	.	A:6:C:0:G:204:T:0:N:0:O:0	.	3,107,3,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1288	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:134:G:0:T:3:N:0:O:8	.	0,92,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:122:C:0:G:0:T:3:N:0:O:0	.	3,44,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.05714285714285714	.	A:0:C:97:G:0:T:6:N:0:O:2	.	0,59,6,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,13,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1741	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:2:T:0:N:0:O:3	.	1,36,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:65:C:0:G:2:T:0:N:0:O:1	.	2,18,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1881	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:101:C:0:G:3:T:0:N:0:O:1	.	3,31,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:122:T:0:N:0:O:2	.	3,50,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.08602150537634409	.	A:8:C:0:G:85:T:0:N:0:O:0	.	8,23,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	1.0	.	A:0:C:0:G:0:T:109:N:0:O:0	.	36,36,73,73	206.227	1081.2	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	2557	A	G	A	16	ignore low frequency variant	Pass	False	False	True	328	.	20	.	0.024390243902439025	.	A:319:C:0:G:8:T:0:N:0:O:1	.	8,132,0,196	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.02717391304347826	.	A:172:C:0:G:5:T:0:N:0:O:7	.	5,87,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	126	.	20	.	0.7619047619047619	.	A:0:C:0:G:0:T:96:N:0:O:30	.	47,77,49,49	69.237	1536.9	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:4:G:0:T:113:N:0:O:1	.	0,58,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:99:C:0:G:3:T:0:N:0:O:2	.	3,15,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:0:C:4:G:0:T:126:N:0:O:0	.	0,71,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:119:N:0:O:4	.	0,62,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:75:G:0:T:3:N:0:O:2	.	0,47,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:54:C:0:G:0:T:2:N:0:O:2	.	2,22,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3484	A	G	A	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.02100840336134454	.	A:228:C:0:G:5:T:0:N:0:O:5	.	5,84,0,154	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.08860759493670886	.	A:0:C:72:G:0:T:7:N:0:O:0	.	0,56,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3690	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:81:C:0:G:0:T:2:N:0:O:3	.	1,24,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3691	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	1,29,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:3:T:86:N:0:O:16	.	0,48,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:119:T:3:N:0:O:2	.	3,68,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:92:T:0:N:0:O:1	.	0,61,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:100:T:0:N:0:O:9	.	3,46,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:1:C:101:G:0:T:3:N:0:O:0	.	0,77,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:1:C:3:G:0:T:112:N:0:O:0	.	0,74,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4009	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:112:G:0:T:3:N:0:O:0	.	2,72,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:122:G:0:T:3:N:0:O:1	.	0,60,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:76:C:0:G:2:T:0:N:0:O:3	.	2,29,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	257	.	20	.	0.0311284046692607	.	A:0:C:0:G:246:T:8:N:0:O:3	.	0,171,8,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:4:C:0:G:196:T:0:N:0:O:1	.	0,163,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.02843601895734597	.	A:6:C:0:G:202:T:0:N:0:O:3	.	0,126,6,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:118:G:0:T:3:N:0:O:7	.	0,72,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.025510204081632654	.	A:191:C:0:G:5:T:0:N:0:O:0	.	3,105,2,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.05063291139240506	.	A:141:C:0:G:0:T:8:N:0:O:9	.	0,95,8,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4802	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:127:T:0:N:0:O:6	.	3,67,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4803	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:96:C:0:G:3:T:0:N:0:O:1	.	3,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:0:G:3:T:117:N:0:O:5	.	0,69,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	2,12,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:0:T:82:N:0:O:0	.	2,20,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5441	G	T	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:0:G:62:T:2:N:0:O:5	.	1,34,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:89:T:1:N:0:O:2	.	0,40,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,39,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5736	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	67	.	20	.	0.2835820895522388	.	A:0:C:47:G:0:T:19:N:0:O:1	.	0,44,19,23	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:1:G:0:T:48:N:0:O:3	.	0,31,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:63:N:0:O:0	.	0,37,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5787	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:81:G:0:T:2:N:0:O:1	.	0,44,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5940	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:97:N:0:O:3	.	2,47,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	1,60,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.12222222222222222	.	A:0:C:77:G:0:T:11:N:0:O:2	.	0,69,11,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:0:C:2:G:0:T:97:N:0:O:15	.	1,58,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.05384615384615385	.	A:0:C:122:G:0:T:7:N:0:O:1	.	0,82,7,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:140:C:0:G:3:T:0:N:0:O:0	.	3,63,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	2,39,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:86:T:0:N:0:O:1	.	3,42,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:85:T:0:N:0:O:1	.	2,35,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,29,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:0:G:118:T:4:N:0:O:2	.	1,62,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:0:T:2:N:0:O:1	.	0,61,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:89:N:0:O:0	.	2,29,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	7279	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:131:G:0:T:3:N:0:O:2	.	1,75,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	7350	C	T	N	2	allele in negative control	Alarm	False	False	False	213	.	20	.	0.023474178403755867	.	A:0:C:195:G:0:T:5:N:0:O:13	.	1,147,4,66	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:76:T:0:N:0:O:1	.	5,12,0,70	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	7594	C	T	N	2	allele in negative control	Alarm	False	False	False	84	.	20	.	0.023809523809523808	.	A:0:C:73:G:0:T:2:N:0:O:9	.	0,71,2,13	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	7820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:2:G:0:T:62:N:0:O:0	.	0,42,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:4:G:0:T:98:N:0:O:1	.	0,58,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	8016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:79:G:0:T:3:N:0:O:1	.	0,45,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	8106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,53,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:0:G:139:T:3:N:0:O:7	.	2,61,1,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	8379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:0:G:2:T:0:N:0:O:0	.	2,30,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:99:T:0:N:0:O:3	.	3,37,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:4:G:1:T:113:N:0:O:0	.	0,69,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.17647058823529413	.	A:12:C:0:G:56:T:0:N:0:O:0	.	12,14,0,54	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:110:N:0:O:14	.	3,66,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:120:T:0:N:0:O:2	.	3,60,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:78:G:0:T:2:N:0:O:1	.	2,25,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.06896551724137931	.	A:0:C:108:G:0:T:8:N:0:O:0	.	0,82,8,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	9584	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:110:T:1:N:0:O:3	.	3,52,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	9665	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:102:G:0:T:3:N:0:O:3	.	0,64,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	9798	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,57,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:83:G:0:T:2:N:0:O:14	.	2,35,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:93:N:0:O:1	.	0,71,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	10331	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:122:C:0:G:3:T:1:N:0:O:1	.	3,76,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:98:T:3:N:0:O:1	.	3,62,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.056451612903225805	.	A:0:C:0:G:7:T:110:N:0:O:7	.	0,75,7,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:83:N:0:O:0	.	2,54,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	11272	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:118:T:0:N:0:O:2	.	3,83,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	105	.	20	.	0.0380952380952381	.	A:0:C:99:G:0:T:4:N:0:O:2	.	0,79,4,26	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	11733	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:94:N:0:O:2	.	2,47,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:98:T:0:N:0:O:3	.	2,41,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:81:G:0:T:1:N:0:O:2	.	0,31,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.10144927536231885	.	A:0:C:60:G:0:T:7:N:0:O:2	.	0,40,7,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	12713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:103:G:0:T:3:N:0:O:4	.	1,39,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,32,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:0:C:68:G:0:T:4:N:0:O:0	.	0,37,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13330	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:0:T:140:N:0:O:1	.	3,45,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13378	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.026881720430107527	.	A:0:C:181:G:0:T:5:N:0:O:0	.	0,120,5,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:2:C:0:G:58:T:0:N:0:O:0	.	2,29,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:63:G:0:T:2:N:0:O:1	.	0,61,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.0989010989010989	.	A:9:C:0:G:77:T:0:N:0:O:5	.	9,25,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:1:C:64:G:0:T:3:N:0:O:0	.	0,45,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:65:G:0:T:2:N:0:O:4	.	1,32,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:120:T:0:N:0:O:19	.	3,62,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,50,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.07547169811320754	.	A:0:C:98:G:0:T:8:N:0:O:0	.	0,33,8,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:65:C:0:G:0:T:2:N:0:O:8	.	0,40,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:87:C:0:G:4:T:0:N:0:O:3	.	0,21,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:109:G:0:T:3:N:0:O:17	.	0,62,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	92	.	20	.	1.0	.	A:0:C:0:G:0:T:92:N:0:O:0	.	39,39,53,53	392.839	1165.9	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	14549	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:133:C:0:G:3:T:0:N:0:O:1	.	3,49,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:99:G:0:T:3:N:0:O:1	.	0,70,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:87:T:0:N:0:O:0	.	4,26,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	14676	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,39,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:0:N:0:O:1	.	2,53,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	14944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:109:T:0:N:0:O:2	.	3,39,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:70:N:0:O:3	.	0,64,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	15503	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,41,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:0:C:1:G:0:T:41:N:0:O:20	.	0,40,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.1702127659574468	.	A:0:C:38:G:0:T:8:N:0:O:1	.	0,22,8,25	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	15958	G	C	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:95:T:0:N:0:O:1	.	0,52,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	15960	C	G	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:94:G:2:T:0:N:0:O:3	.	0,51,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,52,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	16220	C	A	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:79:G:0:T:1:N:0:O:1	.	1,57,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,35,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:0:G:97:T:5:N:0:O:2	.	5,47,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:105:G:0:T:3:N:0:O:0	.	0,67,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:83:T:0:N:0:O:3	.	2,21,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:77:G:0:T:2:N:0:O:6	.	0,59,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:90:T:0:N:0:O:4	.	3,8,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,34,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.1	.	A:1:C:0:G:10:T:84:N:0:O:5	.	0,39,10,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:117:T:2:N:0:O:22	.	0,46,3,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	16949	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:73:G:0:T:2:N:0:O:1	.	0,39,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	16950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:80:N:0:O:4	.	0,39,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:0:T:81:N:0:O:1	.	3,12,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:89:T:0:N:0:O:1	.	3,26,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:84:G:0:T:2:N:0:O:2	.	0,58,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,26,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:95:C:0:G:0:T:4:N:0:O:10	.	0,63,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	190	.	20	.	0.021052631578947368	.	A:0:C:175:G:0:T:4:N:0:O:11	.	0,105,4,85	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	65	.	20	.	0.03076923076923077	.	A:0:C:62:G:0:T:2:N:0:O:1	.	0,45,2,20	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	91	.	20	.	0.02197802197802198	.	A:81:C:0:G:0:T:2:N:0:O:8	.	0,45,2,46	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	0,67,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0392156862745098	.	A:6:C:0:G:142:T:3:N:0:O:2	.	6,12,0,141	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.061224489795918366	.	A:1:C:135:G:0:T:9:N:0:O:2	.	0,74,9,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.05263157894736842	.	A:0:C:0:G:6:T:107:N:0:O:1	.	3,31,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:0:T:1:N:0:O:0	.	0,22,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:84:N:0:O:0	.	2,36,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:0:C:158:G:0:T:4:N:0:O:0	.	0,85,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:5:C:0:G:151:T:0:N:0:O:1	.	5,32,0,125	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19333	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	1,10,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19387	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,9,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19475	T	A	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:0:T:20:N:0:O:2	.	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19605	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:91:N:0:O:1	.	0,40,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:91:N:0:O:0	.	0,39,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19900	G	T	G	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.02032520325203252	.	A:1:C:0:G:236:T:5:N:0:O:4	.	3,81,2,165	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19984	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	1,29,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.05263157894736842	.	A:0:C:0:G:3:T:52:N:0:O:2	.	0,32,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	19998	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:124:C:0:G:3:T:0:N:0:O:1	.	3,58,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20069	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:128:T:3:N:0:O:3	.	3,75,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20085	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:96:C:0:G:3:T:0:N:0:O:2	.	3,40,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,39,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.031914893617021274	.	A:6:C:0:G:181:T:0:N:0:O:1	.	6,63,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20409	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:93:N:0:O:2	.	0,70,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20410	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:0:G:127:T:3:N:0:O:0	.	3,73,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:0:C:0:G:6:T:113:N:0:O:0	.	6,58,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:6:C:0:G:78:T:0:N:0:O:0	.	6,35,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.064	.	A:0:C:103:G:0:T:8:N:0:O:14	.	8,62,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0546875	.	A:7:C:0:G:118:T:0:N:0:O:3	.	7,40,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:0:G:2:T:66:N:0:O:0	.	2,9,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.13793103448275862	.	A:0:C:0:G:23:T:4:N:0:O:2	.	0,16,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21161	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.07142857142857142	.	A:0:C:25:G:0:T:2:N:0:O:1	.	0,17,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21176	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	1,13,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21177	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	1,15,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21178	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	1,15,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21180	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21186	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	0,17,1,5	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21204	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	1,14,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21205	C	A	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:28:G:0:T:0:N:0:O:0	.	1,16,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21206	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	1,17,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21234	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:25:G:0:T:1:N:0:O:4	.	0,14,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21235	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,15,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21238	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	0,15,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21265	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:32:T:0:N:0:O:1	.	0,13,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:29:G:0:T:1:N:0:O:0	.	0,17,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21302	C	G	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:1:T:0:N:0:O:0	.	0,17,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21307	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	1,11,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,12,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21318	T	G	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:0:G:1:T:34:N:0:O:1	.	0,18,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,10,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21323	A	T	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:0:T:1:N:0:O:0	.	1,18,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21325	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,18,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:82:G:0:T:4:N:0:O:14	.	0,73,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:85:C:2:G:0:T:0:N:0:O:0	.	2,52,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:84:G:0:T:3:N:0:O:4	.	3,25,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:89:G:0:T:2:N:0:O:3	.	0,74,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	0,71,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,21,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	22036	A	G	N	2	allele in negative control	Alarm	False	False	False	210	.	20	.	0.023809523809523808	.	A:203:C:0:G:5:T:1:N:0:O:1	.	5,120,0,90	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.033783783783783786	.	A:5:C:0:G:143:T:0:N:0:O:0	.	5,87,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.026200873362445413	.	A:223:C:0:G:0:T:6:N:0:O:0	.	5,158,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	145	.	20	.	0.027586206896551724	.	A:0:C:0:G:4:T:141:N:0:O:0	.	4,75,0,70	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:0:C:139:G:0:T:5:N:0:O:0	.	0,84,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:0:C:0:G:176:T:4:N:0:O:3	.	4,95,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:142:C:0:G:3:T:0:N:0:O:0	.	2,58,1,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	0.8934426229508197	.	A:0:C:0:G:109:T:0:N:0:O:13	.	57,70,52,52	70.0	1553.3	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:100:C:0:G:3:T:0:N:0:O:3	.	3,36,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:91:C:0:G:3:T:1:N:0:O:0	.	3,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:85:G:0:T:3:N:0:O:4	.	0,72,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.11009174311926606	.	A:0:C:96:G:0:T:12:N:0:O:1	.	0,74,12,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:0:T:83:N:0:O:0	.	2,41,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:95:T:0:N:0:O:1	.	3,60,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.07	.	A:7:C:0:G:93:T:0:N:0:O:0	.	7,23,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,15,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.06593406593406594	.	A:0:C:84:G:0:T:6:N:0:O:1	.	0,72,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24179	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:115:N:0:O:1	.	1,65,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24243	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:0:T:59:N:0:O:6	.	0,57,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:57:C:0:G:2:T:0:N:0:O:6	.	0,57,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:63:G:0:T:2:N:0:O:10	.	0,68,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:75:T:0:N:0:O:2	.	2,14,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:84:T:0:N:0:O:3	.	2,23,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.037267080745341616	.	A:6:C:154:G:0:T:0:N:0:O:1	.	6,77,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.03428571428571429	.	A:156:C:0:G:0:T:6:N:0:O:13	.	6,112,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:4:C:0:G:121:T:0:N:0:O:25	.	3,75,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24921	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	1,43,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:84:T:1:N:0:O:1	.	0,52,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:2:T:87:N:0:O:0	.	0,59,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,65,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:74:N:0:O:0	.	1,29,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	25064	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:124:T:0:N:0:O:2	.	3,49,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:0:G:3:T:86:N:0:O:0	.	3,31,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25552	G	T	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:0:G:67:T:2:N:0:O:1	.	2,34,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	25553	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.05084745762711865	.	A:0:C:54:G:0:T:3:N:0:O:2	.	1,26,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	110	.	20	.	0.990909090909091	.	A:0:C:0:G:0:T:109:N:0:O:1	.	64,65,45,45	350.0	1810.6	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:114:G:0:T:0:N:0:O:18	.	3,88,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:80:G:0:T:2:N:0:O:5	.	1,68,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:63:C:4:G:0:T:0:N:0:O:3	.	3,50,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:93:C:0:G:0:T:3:N:0:O:3	.	0,86,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,62,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:84:C:0:G:3:T:0:N:0:O:3	.	3,44,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,54,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26233	G	T	T	14	new position at high frequency	Pass	False	True	True	287	.	20	.	0.9860627177700348	.	A:0:C:0:G:0:T:283:N:0:O:4	.	156,160,127,127	70.0	1793.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:97:T:0:N:0:O:0	.	3,63,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,66,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:6:C:0:G:84:T:0:N:0:O:2	.	6,49,0,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:5:C:0:G:70:T:0:N:0:O:1	.	5,34,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.03428571428571429	.	A:0:C:169:G:0:T:6:N:0:O:0	.	0,145,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:80:T:0:N:0:O:0	.	4,8,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:1:C:94:G:0:T:3:N:0:O:0	.	0,58,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26823	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,50,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26824	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:125:T:0:N:0:O:0	.	3,51,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:89:T:0:N:0:O:0	.	4,31,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:2:T:0:N:0:O:1	.	2,30,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.14130434782608695	.	A:0:C:79:G:0:T:13:N:0:O:0	.	0,57,13,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,60,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:3:G:0:T:95:N:0:O:1	.	0,58,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:120:G:0:T:3:N:0:O:10	.	0,75,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:100:G:0:T:0:N:0:O:0	.	4,62,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:122:C:0:G:0:T:4:N:0:O:32	.	4,113,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:91:C:0:G:3:T:0:N:0:O:0	.	3,43,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:4:C:0:G:119:T:0:N:0:O:5	.	4,69,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:2:C:0:G:0:T:57:N:0:O:2	.	0,30,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28400	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:1:C:94:G:0:T:2:N:0:O:8	.	1,56,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28723	T	C	T	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.0546218487394958	.	A:0:C:13:G:0:T:217:N:0:O:8	.	0,73,13,165	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:95:C:0:G:3:T:0:N:0:O:1	.	1,13,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:60:G:0:T:2:N:0:O:0	.	0,16,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:66:G:0:T:2:N:0:O:12	.	0,30,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:45:G:0:T:1:N:0:O:1	.	0,20,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.05309734513274336	.	A:6:C:0:G:106:T:0:N:0:O:1	.	6,8,0,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:48:G:0:T:2:N:0:O:8	.	0,19,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	126	.	20	.	0.07936507936507936	.	A:0:C:110:G:0:T:10:N:0:O:6	.	0,102,10,24	.	38.7	.	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:97:T:0:N:0:O:4	.	2,45,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:1:C:2:G:90:T:0:N:0:O:0	.	1,42,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:84:N:0:O:4	.	0,60,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:92:C:0:G:3:T:0:N:0:O:2	.	0,44,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:70:C:0:G:3:T:0:N:0:O:1	.	2,20,1,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.04861111111111111	.	A:136:C:7:G:0:T:0:N:0:O:1	.	0,67,7,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:32:T:0:N:0:O:2	.	1,6,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29756	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:41:C:0:G:1:T:0:N:0:O:1	.	1,12,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	29827	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:1:T:0:N:0:O:1	.	1,23,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00152	artic-pipeline	NB05	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	302	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	3144	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	3145	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00152	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:21:N:0:O:4	.	0,4,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.08	.	A:0:C:22:G:0:T:2:N:0:O:1	.	0,6,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,8,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	165	G	C	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.058823529411764705	.	A:0:C:2:G:32:T:0:N:0:O:0	.	0,1,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	197	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:0:T:1:N:0:O:0	.	0,6,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	233	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:32:G:0:T:1:N:0:O:3	.	0,8,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	242	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	1,8,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	273	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.21875	.	A:7:C:0:G:25:T:0:N:0:O:0	.	1,5,6,27	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	1,4,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	327	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:31:N:0:O:1	.	0,10,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:0:G:48:T:1:N:0:O:0	.	0,11,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	420	G	T	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:0:G:29:T:1:N:0:O:0	.	0,8,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	421	C	A	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:24:G:0:T:0:N:0:O:0	.	0,7,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	426	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:23:N:0:O:2	.	0,9,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	1,7,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	467	T	A	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:0:T:28:N:0:O:0	.	1,11,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	482	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,11,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	484	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,12,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	490	T	A	A	1	near depth threshold	Alarm	False	True	True	21	.	20	.	0.9047619047619048	.	A:19:C:0:G:0:T:0:N:0:O:2	.	1,3,18,18	69.237	443.6	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	509	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:31:T:0:N:0:O:0	.	1,10,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	563	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.07692307692307693	.	A:24:C:0:G:2:T:0:N:0:O:0	.	0,9,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	620	C	A	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:21:G:0:T:0:N:0:O:0	.	0,8,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	621	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:20:T:0:N:0:O:0	.	0,7,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	622	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:23:G:0:T:0:N:0:O:2	.	0,9,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:23:T:0:N:0:O:0	.	0,7,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	683	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.052941176470588235	.	A:0:C:160:G:0:T:9:N:0:O:1	.	1,69,8,101	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	1,57,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	803	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	0,25,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	932	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.06474820143884892	.	A:0:C:0:G:128:T:9:N:0:O:2	.	1,56,8,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1027	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:4:G:0:T:97:N:0:O:0	.	2,59,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:0:C:86:G:0:T:5:N:0:O:7	.	0,47,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	1165	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:0:T:102:N:0:O:1	.	2,61,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:81:N:0:O:1	.	0,47,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1345	A	C	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:104:C:3:G:0:T:0:N:0:O:3	.	3,39,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:97:G:0:T:3:N:0:O:1	.	0,56,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	1,54,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	0,56,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:51:C:0:G:2:T:0:N:0:O:0	.	1,8,1,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1670	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:121:G:0:T:3:N:0:O:0	.	1,53,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1696	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:87:T:2:N:0:O:1	.	0,47,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1698	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:86:G:0:T:5:N:0:O:0	.	3,49,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:4:C:0:G:119:T:0:N:0:O:18	.	0,60,4,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1844	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.05084745762711865	.	A:112:C:0:G:0:T:6:N:0:O:0	.	2,43,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	1902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	291	.	20	.	0.030927835051546393	.	A:0:C:279:G:0:T:9:N:0:O:3	.	5,128,4,163	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:108:G:0:T:3:N:0:O:0	.	3,37,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2097	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:122:C:0:G:4:T:0:N:0:O:0	.	4,43,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2098	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:4:C:0:G:134:T:0:N:0:O:0	.	4,61,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2113	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.018404907975460124	.	A:0:C:144:G:0:T:3:N:0:O:16	.	0,72,3,91	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,58,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2180	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.08064516129032258	.	A:1:C:0:G:113:T:10:N:0:O:0	.	6,63,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.11	.	A:11:C:0:G:89:T:0:N:0:O:0	.	10,29,1,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	2493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:97:C:0:G:2:T:0:N:0:O:16	.	0,26,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:80:T:0:N:0:O:3	.	0,13,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2519	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:122:N:0:O:0	.	0,49,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2553	T	C	T	16	ignore low frequency variant	Pass	False	False	True	331	.	20	.	0.021148036253776436	.	A:0:C:7:G:0:T:323:N:0:O:1	.	2,138,5,193	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.023809523809523808	.	A:161:C:0:G:4:T:0:N:0:O:3	.	4,71,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2815	T	C	T	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.028985507246376812	.	A:0:C:6:G:0:T:188:N:0:O:13	.	2,110,4,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.06	.	A:0:C:93:G:0:T:6:N:0:O:1	.	2,74,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:0:C:116:G:0:T:4:N:0:O:8	.	0,107,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	2996	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:4:G:0:T:120:N:0:O:0	.	1,51,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	2,32,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:0:G:89:T:4:N:0:O:5	.	1,53,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	234	.	20	.	0.9914529914529915	.	A:0:C:0:G:1:T:232:N:0:O:1	.	84,86,148,148	269.237	656.4	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	3209	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:0:G:144:T:0:N:0:O:0	.	3,60,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.023121387283236993	.	A:156:C:0:G:4:T:0:N:0:O:13	.	4,72,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3343	T	C	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.05142857142857143	.	A:0:C:9:G:0:T:166:N:0:O:0	.	4,85,5,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:1:C:92:G:0:T:2:N:0:O:0	.	0,66,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:57:C:0:G:0:T:3:N:0:O:3	.	2,29,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3445	A	T	A	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.059880239520958084	.	A:157:C:0:G:0:T:10:N:0:O:0	.	5,78,5,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3456	A	G	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:144:C:0:G:3:T:0:N:0:O:1	.	3,65,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.07317073170731707	.	A:0:C:76:G:0:T:6:N:0:O:0	.	0,64,6,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.061068702290076333	.	A:0:C:8:G:0:T:122:N:0:O:1	.	7,72,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3645	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:120:C:4:G:0:T:0:N:0:O:0	.	2,63,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:103:T:0:N:0:O:2	.	4,44,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3772	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:3:G:0:T:92:N:0:O:4	.	0,74,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3773	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,64,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3811	C	T	C	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.03070175438596491	.	A:0:C:210:G:0:T:7:N:0:O:11	.	4,139,3,89	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:3:T:79:N:0:O:15	.	0,46,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:87:T:0:N:0:O:1	.	0,48,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3870	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.05	.	A:114:C:0:G:6:T:0:N:0:O:0	.	2,49,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:81:G:0:T:3:N:0:O:0	.	0,62,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	3980	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	2,67,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	3994	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:120:T:3:N:0:O:1	.	0,67,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:92:G:0:T:2:N:0:O:4	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4175	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:67:C:0:G:4:T:0:N:0:O:0	.	2,30,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4194	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:111:G:0:T:3:N:0:O:1	.	0,52,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4263	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:0:G:105:T:5:N:0:O:3	.	3,49,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4289	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:1:G:104:T:3:N:0:O:2	.	1,42,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4317	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:107:T:3:N:0:O:0	.	0,51,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4319	G	C	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.04918032786885246	.	A:0:C:6:G:114:T:0:N:0:O:2	.	4,50,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4346	T	C	T	16	ignore low frequency variant	Pass	False	False	True	249	.	20	.	0.024096385542168676	.	A:0:C:6:G:0:T:240:N:0:O:3	.	1,120,5,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.03864734299516908	.	A:0:C:0:G:193:T:8:N:0:O:6	.	0,129,8,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:4:C:0:G:159:T:0:N:0:O:3	.	1,124,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.03723404255319149	.	A:7:C:0:G:179:T:1:N:0:O:1	.	0,95,7,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.049586776859504134	.	A:0:C:107:G:1:T:6:N:0:O:7	.	0,59,6,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	4794	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.061068702290076333	.	A:0:C:119:G:0:T:8:N:0:O:4	.	7,77,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5008	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	2,46,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5084	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:0:T:2:N:0:O:0	.	2,56,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:89:T:2:N:0:O:0	.	2,39,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5208	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:127:G:0:T:3:N:0:O:1	.	1,78,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:73:T:0:N:0:O:0	.	2,26,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:0:T:76:N:0:O:1	.	3,35,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5457	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.08333333333333333	.	A:0:C:131:G:1:T:12:N:0:O:0	.	6,89,6,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	5554	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:94:T:2:N:0:O:3	.	2,55,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5565	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:0:T:3:N:0:O:0	.	0,83,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5721	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.044444444444444446	.	A:0:C:0:G:128:T:6:N:0:O:1	.	2,74,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	0,56,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.1	.	A:0:C:68:G:0:T:8:N:0:O:4	.	0,69,8,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:97:N:0:O:3	.	1,65,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	5893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:0:C:127:G:0:T:4:N:0:O:1	.	4,74,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:114:G:0:T:4:N:0:O:3	.	1,70,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	126	.	20	.	0.9285714285714286	.	A:0:C:0:G:1:T:117:N:0:O:8	.	65,73,52,53	280.0	986.6	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.13793103448275862	.	A:0:C:73:G:0:T:12:N:0:O:2	.	0,63,12,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.09523809523809523	.	A:1:C:93:G:0:T:10:N:0:O:1	.	2,59,8,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:98:T:0:N:0:O:4	.	2,26,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	6279	C	A	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.09032258064516129	.	A:14:C:140:G:0:T:0:N:0:O:1	.	5,62,9,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6312	C	A	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:118:G:0:T:0:N:0:O:28	.	1,59,2,90	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	6332	A	C	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:129:C:3:G:0:T:0:N:0:O:0	.	0,58,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:130:T:0:N:0:O:3	.	0,43,3,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6434	A	C	A	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.037037037037037035	.	A:147:C:6:G:0:T:0:N:0:O:9	.	1,63,5,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:98:G:0:T:4:N:0:O:0	.	0,67,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:129:G:0:T:3:N:0:O:13	.	1,69,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	6928	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,64,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:0:T:2:N:0:O:0	.	0,77,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7093	C	A	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:21:G:0:T:0:N:0:O:0	.	1,12,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:22:N:0:O:1	.	0,11,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7103	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	1,11,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7215	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,10,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:105:T:0:N:0:O:1	.	3,44,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7530	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,44,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7668	A	C	A	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.03070175438596491	.	A:221:C:7:G:0:T:0:N:0:O:0	.	4,112,3,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:98:N:0:O:8	.	0,67,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:106:C:5:G:0:T:0:N:0:O:1	.	5,53,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8066	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:146:C:0:G:4:T:0:N:0:O:0	.	4,57,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8348	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,10,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8356	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,16,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8387	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,14,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8432	G	T	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.17391304347826086	.	A:0:C:0:G:19:T:4:N:0:O:0	.	1,11,3,12	.	.	.	depth near threshold	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8470	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:26:T:0:N:0:O:1	.	1,15,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8509	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,15,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8516	G	A	G	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.1	.	A:2:C:0:G:18:T:0:N:0:O:0	.	2,11,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8578	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:20:T:0:N:0:O:0	.	0,12,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8584	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,13,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8586	T	G	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:0:G:1:T:22:N:0:O:0	.	1,11,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	139	.	20	.	1.0	.	A:0:C:0:G:0:T:139:N:0:O:0	.	76,76,63,63	209.237	1312.1	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.09210526315789473	.	A:7:C:0:G:66:T:0:N:0:O:3	.	7,12,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	8969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.037037037037037035	.	A:0:C:128:G:0:T:5:N:0:O:2	.	3,46,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9106	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:80:N:0:O:0	.	0,39,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:4:C:0:G:120:T:0:N:0:O:1	.	4,41,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:107:G:0:T:3:N:0:O:1	.	0,69,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:96:G:0:T:4:N:0:O:1	.	1,65,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	9335	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:111:T:0:N:0:O:2	.	1,69,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:0:T:98:N:0:O:4	.	1,62,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:131:T:3:N:0:O:0	.	0,69,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9414	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:0:G:120:T:4:N:0:O:0	.	3,65,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9502	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.0603448275862069	.	A:0:C:106:G:0:T:7:N:0:O:3	.	4,69,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.02608695652173913	.	A:0:C:222:G:0:T:6:N:0:O:2	.	0,116,6,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9554	G	T	G	16	ignore low frequency variant	Pass	False	False	True	290	.	20	.	0.027586206896551724	.	A:0:C:0:G:277:T:8:N:0:O:5	.	5,172,3,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9592	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:108:G:0:T:7:N:0:O:0	.	3,69,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.017964071856287425	.	A:0:C:119:G:0:T:3:N:0:O:45	.	2,118,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	2,77,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9856	G	T	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:29:T:1:N:0:O:2	.	1,21,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	9910	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:33:T:0:N:0:O:0	.	1,17,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9947	G	T	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:31:T:1:N:0:O:0	.	0,12,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	9951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:24:G:0:T:1:N:0:O:0	.	0,17,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:22:T:0:N:0:O:1	.	1,9,0,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:26:G:0:T:1:N:0:O:3	.	1,12,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10028	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:34:C:0:G:2:T:0:N:0:O:0	.	2,13,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.07142857142857142	.	A:0:C:2:G:0:T:24:N:0:O:2	.	0,20,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10071	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:30:N:0:O:1	.	1,11,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10072	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:31:T:0:N:0:O:0	.	1,12,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,18,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10087	T	G	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:0:G:1:T:33:N:0:O:6	.	0,23,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10170	C	A	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0189873417721519	.	A:3:C:147:G:0:T:0:N:0:O:8	.	3,71,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:106:N:0:O:5	.	0,49,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:106:G:0:T:3:N:0:O:0	.	0,43,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10356	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.0425531914893617	.	A:135:C:0:G:6:T:0:N:0:O:0	.	3,73,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.02857142857142857	.	A:6:C:0:G:202:T:0:N:0:O:2	.	6,72,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10419	C	T	C	16	ignore low frequency variant	Pass	False	False	True	293	.	20	.	0.034129692832764506	.	A:0:C:283:G:0:T:10:N:0:O:0	.	6,141,4,152	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:95:G:0:T:3:N:0:O:5	.	0,73,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	10464	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:93:C:0:G:2:T:0:N:0:O:6	.	2,55,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:91:T:2:N:0:O:1	.	2,55,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:62:G:0:T:2:N:0:O:0	.	0,46,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	10893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.1282051282051282	.	A:0:C:68:G:0:T:10:N:0:O:0	.	9,45,1,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	11182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.1509433962264151	.	A:0:C:16:G:0:T:88:N:0:O:2	.	7,53,9,53	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	11383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:118:T:3:N:0:O:1	.	1,86,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	11386	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:91:C:0:G:3:T:0:N:0:O:6	.	3,56,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	11487	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:0:C:89:G:0:T:6:N:0:O:2	.	3,62,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	11667	A	C	A	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.023622047244094488	.	A:248:C:6:G:0:T:0:N:0:O:0	.	4,156,2,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	106	.	20	.	0.07547169811320754	.	A:0:C:95:G:0:T:8:N:0:O:3	.	0,81,8,25	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	11732	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:74:C:0:G:3:T:0:N:0:O:3	.	1,55,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	12054	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.05454545454545454	.	A:0:C:6:G:0:T:104:N:0:O:0	.	1,57,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:117:G:0:T:3:N:0:O:1	.	3,59,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,56,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:98:G:0:T:3:N:0:O:23	.	0,86,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0136986301369863	.	A:1:C:0:G:48:T:0:N:0:O:24	.	0,58,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12333	C	G	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:91:G:2:T:0:N:0:O:15	.	1,48,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12396	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.1111111111111111	.	A:0:C:79:G:0:T:10:N:0:O:1	.	3,42,7,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:88:C:0:G:3:T:0:N:0:O:2	.	3,33,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:80:T:0:N:0:O:4	.	4,31,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12428	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,28,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12437	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:67:G:0:T:2:N:0:O:2	.	2,34,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.02702702702702703	.	A:5:C:0:G:179:T:0:N:0:O:1	.	5,71,0,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	133	.	20	.	1.0	.	A:133:C:0:G:0:T:0:N:0:O:0	.	70,70,63,63	210.0	1108.5	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12514	G	C	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.04411764705882353	.	A:0:C:6:G:129:T:0:N:0:O:1	.	3,91,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12636	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.104	.	A:1:C:0:G:111:T:13:N:0:O:0	.	9,72,4,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:0:T:2:N:0:O:1	.	2,45,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:75:C:0:G:2:T:1:N:0:O:3	.	2,45,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:101:G:0:T:4:N:0:O:0	.	0,89,4,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02358490566037736	.	A:5:C:0:G:205:T:0:N:0:O:2	.	5,69,0,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12842	T	A	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:0:T:123:N:0:O:9	.	0,54,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12884	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:108:C:0:G:0:T:7:N:0:O:0	.	3,40,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:0:T:115:N:0:O:2	.	3,49,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:98:C:0:G:2:T:0:N:0:O:3	.	2,26,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,48,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13050	C	T	C	16	ignore low frequency variant	Pass	False	False	True	271	.	20	.	0.06273062730627306	.	A:0:C:254:G:0:T:17:N:0:O:0	.	9,145,8,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:117:T:0:N:0:O:0	.	3,69,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:4:C:0:G:0:T:136:N:0:O:17	.	3,95,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:123:C:0:G:3:T:1:N:0:O:18	.	3,68,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13359	T	A	T	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.027777777777777776	.	A:6:C:0:G:0:T:196:N:0:O:14	.	5,87,1,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13360	T	A	T	16	ignore low frequency variant	Pass	False	False	True	278	.	20	.	0.02158273381294964	.	A:6:C:0:G:0:T:224:N:0:O:48	.	5,122,1,156	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.08571428571428572	.	A:0:C:64:G:0:T:6:N:0:O:0	.	0,60,6,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:92:T:0:N:0:O:15	.	4,48,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:67:G:0:T:2:N:0:O:0	.	0,33,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:0:T:102:N:0:O:24	.	1,63,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:0:G:125:T:0:N:0:O:18	.	3,72,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:4:C:0:G:134:T:0:N:0:O:3	.	4,45,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:5:C:0:G:116:T:0:N:0:O:0	.	5,45,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	13976	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:0:G:112:T:4:N:0:O:0	.	2,59,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:97:T:0:N:0:O:0	.	3,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14419	G	C	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.05714285714285714	.	A:0:C:8:G:131:T:1:N:0:O:0	.	6,80,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14494	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.07086614173228346	.	A:0:C:0:G:116:T:9:N:0:O:2	.	4,66,5,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14497	G	T	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.08029197080291971	.	A:0:C:0:G:121:T:11:N:0:O:5	.	5,73,6,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14544	T	A	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:0:G:0:T:112:N:0:O:5	.	4,61,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14554	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.16831683168316833	.	A:0:C:82:G:0:T:17:N:0:O:2	.	12,51,5,50	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:93:G:0:T:4:N:0:O:0	.	0,60,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:0:G:94:T:0:N:0:O:0	.	4,29,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14676	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.09615384615384616	.	A:0:C:92:G:0:T:10:N:0:O:2	.	5,48,5,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	14728	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:0:T:3:N:0:O:0	.	3,53,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:0:G:2:T:0:N:0:O:0	.	2,44,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,43,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,46,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	14987	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:0:T:4:N:0:O:0	.	2,57,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:81:T:0:N:0:O:1	.	3,39,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15082	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:90:C:0:G:3:T:0:N:0:O:2	.	3,48,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15083	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:0:T:94:N:0:O:0	.	3,47,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15208	G	T	G	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.02066115702479339	.	A:1:C:0:G:233:T:5:N:0:O:3	.	3,120,2,122	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15215	G	T	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.035	.	A:0:C:0:G:192:T:7:N:0:O:1	.	0,106,7,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15234	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.058823529411764705	.	A:0:C:1:G:109:T:7:N:0:O:2	.	0,49,7,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15451	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.058823529411764705	.	A:1:C:0:G:127:T:8:N:0:O:0	.	4,55,4,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.06338028169014084	.	A:1:C:132:G:0:T:9:N:0:O:0	.	3,58,6,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15531	T	C	T	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.029914529914529916	.	A:0:C:7:G:0:T:227:N:0:O:0	.	4,123,3,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15543	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.04411764705882353	.	A:0:C:0:G:130:T:6:N:0:O:0	.	6,77,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	15588	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:0:C:132:G:0:T:4:N:0:O:0	.	0,89,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.014705882352941176	.	A:1:C:1:G:0:T:42:N:0:O:24	.	0,50,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.18518518518518517	.	A:0:C:43:G:0:T:10:N:0:O:1	.	0,30,10,24	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	15955	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,50,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.06569343065693431	.	A:0:C:9:G:0:T:115:N:0:O:13	.	5,71,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:90:G:0:T:3:N:0:O:0	.	0,65,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	16127	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.06896551724137931	.	A:0:C:135:G:0:T:10:N:0:O:0	.	3,74,7,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:74:G:0:T:3:N:0:O:0	.	0,62,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16249	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.08547008547008547	.	A:0:C:10:G:0:T:107:N:0:O:0	.	9,64,1,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16269	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:0:G:100:T:5:N:0:O:1	.	2,50,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16351	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:107:G:0:T:7:N:0:O:1	.	3,64,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,52,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16675	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.06060606060606061	.	A:0:C:124:G:0:T:8:N:0:O:0	.	4,48,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:89:T:0:N:0:O:1	.	3,12,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:74:G:0:T:2:N:0:O:2	.	0,47,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.056074766355140186	.	A:0:C:0:G:6:T:95:N:0:O:6	.	0,46,6,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	16900	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.05555555555555555	.	A:7:C:0:G:119:T:0:N:0:O:0	.	4,49,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:3:G:0:T:0:N:0:O:1	.	3,30,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17124	T	C	T	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.024630541871921183	.	A:0:C:5:G:0:T:195:N:0:O:3	.	1,110,4,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17126	T	C	T	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:0:C:5:G:0:T:180:N:0:O:4	.	0,111,5,78	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	17162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:0:G:120:T:3:N:0:O:10	.	3,62,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.06796116504854369	.	A:0:C:96:G:0:T:7:N:0:O:0	.	3,75,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17195	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:72:C:0:G:4:T:0:N:0:O:0	.	1,13,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:92:C:0:G:5:T:0:N:0:O:0	.	5,35,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17338	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.06542056074766354	.	A:0:C:0:G:100:T:7:N:0:O:0	.	4,48,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	17347	G	T	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.0364963503649635	.	A:0:C:0:G:132:T:5:N:0:O:0	.	4,70,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17387	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:131:N:0:O:11	.	2,74,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:74:G:0:T:3:N:0:O:1	.	0,52,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:5:C:0:G:98:T:0:N:0:O:1	.	5,32,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:82:G:0:T:3:N:0:O:0	.	0,47,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17795	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:118:G:0:T:4:N:0:O:0	.	2,69,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	80	.	20	.	0.05	.	A:0:C:75:G:0:T:4:N:0:O:1	.	0,56,4,24	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	106	.	20	.	0.03773584905660377	.	A:89:C:0:G:0:T:4:N:0:O:13	.	0,54,4,52	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	17847	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:90:T:4:N:0:O:1	.	3,69,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.027522935779816515	.	A:0:C:212:G:0:T:6:N:0:O:0	.	4,119,2,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18056	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.04	.	A:0:C:0:G:120:T:5:N:0:O:0	.	5,71,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18058	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.056910569105691054	.	A:0:C:116:G:0:T:7:N:0:O:0	.	3,63,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:1:G:0:T:106:N:0:O:25	.	1,49,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18315	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.08633093525179857	.	A:12:C:0:G:124:T:0:N:0:O:3	.	4,28,8,111	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18322	C	T	C	16	ignore low frequency variant	Pass	False	False	True	290	.	20	.	0.027586206896551724	.	A:1:C:278:G:0:T:8:N:0:O:3	.	3,143,5,147	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:2:T:84:N:0:O:0	.	2,24,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18668	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.10344827586206896	.	A:0:C:0:G:103:T:12:N:0:O:1	.	3,50,9,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:74:T:0:N:0:O:0	.	1,49,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18735	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:80:C:2:G:0:T:0:N:0:O:2	.	0,53,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	111	.	20	.	0.963963963963964	.	A:0:C:107:G:0:T:4:N:0:O:0	.	45,45,62,66	206.227	1527.8	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	18738	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:3:T:116:N:0:O:0	.	0,47,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:4:T:101:N:0:O:0	.	2,44,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:3:G:0:T:82:N:0:O:0	.	0,46,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.058333333333333334	.	A:1:C:112:G:0:T:7:N:0:O:0	.	3,50,4,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	18945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	303	.	20	.	0.0231023102310231	.	A:296:C:0:G:7:T:0:N:0:O:0	.	2,120,5,183	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19170	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.09558823529411764	.	A:0:C:123:G:0:T:13:N:0:O:0	.	3,57,10,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	19185	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.058333333333333334	.	A:0:C:113:G:0:T:7:N:0:O:0	.	4,55,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19221	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.04411764705882353	.	A:6:C:0:G:1:T:127:N:0:O:2	.	2,60,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19272	G	T	G	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.031413612565445025	.	A:1:C:0:G:183:T:6:N:0:O:1	.	3,74,3,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19293	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:44:N:0:O:2	.	0,26,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19297	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:39:N:0:O:1	.	0,21,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19298	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:1:T:0:N:0:O:1	.	0,24,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19299	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,23,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19305	T	A	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:0:T:37:N:0:O:0	.	1,20,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:0:C:1:G:0:T:49:N:0:O:12	.	0,31,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,7,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19356	A	T	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:0:T:1:N:0:O:0	.	1,24,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:45:C:0:G:2:T:0:N:0:O:0	.	1,21,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19369	T	A	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:0:T:37:N:0:O:0	.	1,18,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19393	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.09302325581395349	.	A:0:C:0:G:4:T:39:N:0:O:0	.	0,17,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19401	T	A	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:0:T:42:N:0:O:1	.	1,24,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19402	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	1,23,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	19403	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,20,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19406	G	T	G	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:0:G:47:T:1:N:0:O:5	.	0,25,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19454	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:0:T:1:N:0:O:0	.	0,23,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:0:C:2:G:0:T:46:N:0:O:0	.	0,25,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19484	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:21:G:0:T:1:N:0:O:1	.	0,17,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	19511	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	1,20,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19547	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:43:G:0:T:1:N:0:O:1	.	0,23,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:39:T:0:N:0:O:0	.	1,12,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:4:G:0:T:121:N:0:O:0	.	0,70,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19669	G	T	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0392156862745098	.	A:0:C:0:G:147:T:6:N:0:O:0	.	4,71,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19907	T	C	T	16	ignore low frequency variant	Pass	False	False	True	266	.	20	.	0.022556390977443608	.	A:0:C:6:G:0:T:260:N:0:O:0	.	2,108,4,158	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.09090909090909091	.	A:0:C:0:G:4:T:40:N:0:O:0	.	0,22,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,44,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	20083	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.08270676691729323	.	A:0:C:0:G:122:T:11:N:0:O:0	.	5,47,6,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	20159	A	T	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.05223880597014925	.	A:126:C:0:G:1:T:7:N:0:O:0	.	3,48,4,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	20234	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:112:G:0:T:4:N:0:O:0	.	2,57,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	20303	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.09	.	A:91:C:9:G:0:T:0:N:0:O:0	.	2,39,7,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:71:C:0:G:2:T:0:N:0:O:4	.	2,33,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	20686	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:86:T:0:N:0:O:2	.	2,41,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:77:T:0:N:0:O:1	.	3,28,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	20970	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:119:G:0:T:3:N:0:O:1	.	0,57,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:4:C:0:G:116:T:0:N:0:O:0	.	4,29,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21098	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,8,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.10256410256410256	.	A:0:C:0:G:31:T:4:N:0:O:4	.	0,30,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21161	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:0:T:1:N:0:O:1	.	0,21,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21186	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	0,23,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:22:G:0:T:1:N:0:O:1	.	0,17,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21211	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	1,13,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21248	T	G	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:0:G:1:T:33:N:0:O:0	.	0,17,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21249	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	0,18,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21289	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	0,23,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21297	C	A	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:43:G:0:T:0:N:0:O:1	.	1,25,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21327	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	0,24,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21351	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	0,24,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21352	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:43:C:0:G:1:T:0:N:0:O:5	.	0,29,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21365	C	A	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:33:G:0:T:0:N:0:O:1	.	1,23,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:0:G:90:T:2:N:0:O:20	.	2,60,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:0:G:2:T:67:N:0:O:0	.	2,30,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,51,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	21576	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,49,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,76,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:0:T:93:N:0:O:0	.	0,75,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21867	G	T	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.059602649006622516	.	A:0:C:0:G:142:T:9:N:0:O:0	.	5,60,4,91	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	21938	G	T	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.058823529411764705	.	A:0:C:0:G:144:T:9:N:0:O:0	.	5,70,4,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	21967	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:0:C:5:G:0:T:115:N:0:O:1	.	4,66,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22000	C	T	C	16	ignore low frequency variant	Pass	False	False	True	369	.	20	.	0.02981029810298103	.	A:0:C:272:G:0:T:11:N:0:O:86	.	8,171,3,198	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	0,45,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:131:C:0:G:0:T:3:N:0:O:0	.	3,82,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:2:T:86:N:0:O:0	.	2,36,0,52	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22251	C	T	N	2	allele in negative control	Alarm	False	False	False	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,64,2,21	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22624	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:1:C:134:G:0:T:3:N:0:O:1	.	0,55,3,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22784	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:122:C:0:G:3:T:0:N:0:O:1	.	3,38,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22785	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:142:T:0:N:0:O:0	.	3,38,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22890	C	T	C	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.06358381502890173	.	A:0:C:158:G:0:T:11:N:0:O:4	.	5,101,6,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	22942	T	C	T	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.03954802259887006	.	A:0:C:7:G:0:T:160:N:0:O:10	.	6,101,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:4:G:0:T:121:N:0:O:6	.	0,95,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23259	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.11711711711711711	.	A:0:C:0:G:97:T:13:N:0:O:1	.	7,73,6,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23262	G	C	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:4:G:106:T:0:N:0:O:2	.	3,60,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23263	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:83:C:0:G:2:T:0:N:0:O:3	.	2,39,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23411	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.06201550387596899	.	A:0:C:8:G:0:T:119:N:0:O:2	.	4,84,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23527	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.05673758865248227	.	A:0:C:8:G:0:T:133:N:0:O:0	.	3,73,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23558	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.06722689075630252	.	A:109:C:0:G:1:T:8:N:0:O:1	.	3,57,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23630	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.07692307692307693	.	A:0:C:120:G:0:T:10:N:0:O:0	.	5,71,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23644	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:118:G:0:T:3:N:0:O:3	.	2,67,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.10869565217391304	.	A:0:C:82:G:0:T:10:N:0:O:0	.	7,43,3,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.09821428571428571	.	A:0:C:11:G:0:T:100:N:0:O:1	.	7,62,4,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23751	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.045112781954887216	.	A:0:C:127:G:0:T:6:N:0:O:0	.	2,70,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23754	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04065040650406504	.	A:0:C:5:G:0:T:117:N:0:O:1	.	3,67,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:88:G:0:T:5:N:0:O:0	.	0,62,5,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.046511627906976744	.	A:123:C:0:G:0:T:6:N:0:O:0	.	6,63,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.09523809523809523	.	A:6:C:0:G:0:T:57:N:0:O:0	.	6,29,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	0.9833333333333333	.	A:0:C:0:G:0:T:118:N:0:O:2	.	57,59,61,61	210.0	706.9	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	24049	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,20,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:79:T:0:N:0:O:0	.	4,15,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24138	C	T	C	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.02586206896551724	.	A:0:C:225:G:0:T:6:N:0:O:1	.	0,132,6,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.07352941176470588	.	A:0:C:60:G:0:T:5:N:0:O:3	.	3,64,2,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:7:C:0:G:77:T:0:N:0:O:1	.	7,24,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:74:T:0:N:0:O:2	.	4,18,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24368	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:0:C:0:G:124:T:5:N:0:O:0	.	2,73,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	24420	A	G	A	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:190:C:0:G:4:T:0:N:0:O:4	.	4,98,0,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24422	C	A	C	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:5:C:170:G:0:T:2:N:0:O:24	.	4,113,1,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24555	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0625	.	A:0:C:119:G:1:T:8:N:0:O:0	.	5,59,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24569	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.04477611940298507	.	A:128:C:0:G:6:T:0:N:0:O:0	.	3,68,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24683	G	T	G	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.059880239520958084	.	A:0:C:0:G:157:T:10:N:0:O:0	.	7,95,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.07339449541284404	.	A:1:C:100:G:0:T:8:N:0:O:0	.	0,86,8,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:102:G:0:T:4:N:0:O:0	.	0,76,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:0:T:2:N:0:O:1	.	1,65,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24755	G	T	G	16	ignore low frequency variant	Pass	False	False	True	287	.	20	.	0.0313588850174216	.	A:0:C:0:G:271:T:9:N:0:O:7	.	5,159,4,128	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:5:C:0:G:118:T:0:N:0:O:21	.	5,73,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,52,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:89:C:0:G:2:T:1:N:0:O:3	.	2,63,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25287	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0625	.	A:0:C:0:G:120:T:8:N:0:O:0	.	5,81,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25289	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.05970149253731343	.	A:0:C:8:G:0:T:126:N:0:O:0	.	5,85,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25367	A	C	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:101:C:3:G:0:T:0:N:0:O:2	.	3,58,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:0:G:4:T:98:N:0:O:0	.	4,26,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25424	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.06481481481481481	.	A:1:C:0:G:100:T:7:N:0:O:0	.	3,58,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	25572	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:116:G:0:T:0:N:0:O:12	.	2,57,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25591	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:54:C:0:G:2:T:0:N:0:O:3	.	2,17,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25604	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:89:N:0:O:1	.	0,45,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:101:G:0:T:1:N:0:O:4	.	3,56,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25702	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:111:G:0:T:5:N:0:O:0	.	2,73,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:2:G:68:T:0:N:0:O:0	.	2,20,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:75:G:0:T:2:N:0:O:8	.	2,59,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25775	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,65,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25796	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:89:G:0:T:2:N:0:O:11	.	2,50,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:107:G:0:T:0:N:0:O:30	.	3,78,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:80:C:4:G:0:T:0:N:0:O:3	.	2,51,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.12380952380952381	.	A:0:C:92:G:0:T:13:N:0:O:0	.	6,73,7,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,53,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:116:C:0:G:3:T:0:N:0:O:2	.	3,68,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:82:C:0:G:5:T:0:N:0:O:1	.	5,35,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:90:G:0:T:3:N:0:O:5	.	1,60,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,47,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:90:T:0:N:0:O:1	.	3,48,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:0:C:6:G:0:T:83:N:0:O:0	.	4,78,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26132	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:2:G:0:T:0:N:0:O:0	.	0,70,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26206	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:112:C:0:G:4:T:0:N:0:O:0	.	4,64,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:4:C:0:G:189:T:0:N:0:O:1	.	4,69,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	0,39,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,37,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	3,49,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:96:T:0:N:0:O:0	.	3,31,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.031914893617021274	.	A:0:C:182:G:0:T:6:N:0:O:0	.	0,146,6,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:122:C:0:G:3:T:0:N:0:O:0	.	2,68,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:0:G:3:T:110:N:0:O:1	.	2,61,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:6:C:0:G:78:T:0:N:0:O:0	.	6,13,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	145	.	20	.	0.9862068965517241	.	A:0:C:143:G:0:T:0:N:0:O:2	.	95,97,48,48	405.435	1674.0	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:126:G:1:T:3:N:0:O:0	.	0,93,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26754	G	T	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.03496503496503497	.	A:0:C:0:G:137:T:5:N:0:O:1	.	2,83,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	0,92,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26838	A	T	A	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:146:C:0:G:1:T:3:N:0:O:2	.	3,86,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:125:G:0:T:4:N:0:O:0	.	2,71,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:78:T:1:N:0:O:0	.	3,33,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	1,52,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.08823529411764706	.	A:6:C:0:G:62:T:0:N:0:O:0	.	6,17,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27103	C	T	N	2	allele in negative control	Alarm	False	False	False	84	.	20	.	0.14285714285714285	.	A:0:C:71:G:0:T:12:N:0:O:1	.	0,60,12,24	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27154	C	T	N	2	allele in negative control	Alarm	False	False	False	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	2,25,0,55	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27175	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.017964071856287425	.	A:0:C:140:G:0:T:3:N:0:O:24	.	0,72,3,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:0:C:160:G:0:T:4:N:0:O:2	.	0,70,4,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,60,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.032467532467532464	.	A:0:C:132:G:0:T:5:N:0:O:17	.	0,69,5,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27417	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:148:C:0:G:0:T:4:N:0:O:3	.	3,65,1,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27661	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.04477611940298507	.	A:0:C:117:G:0:T:6:N:0:O:11	.	4,72,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	27772	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:0:C:5:G:0:T:129:N:0:O:4	.	4,81,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	27858	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.044444444444444446	.	A:6:C:126:G:0:T:0:N:0:O:3	.	3,69,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	112	.	20	.	1.0	.	A:0:C:112:G:0:T:0:N:0:O:0	.	55,55,57,57	209.237	1784.0	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	28102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.05185185185185185	.	A:0:C:127:G:0:T:7:N:0:O:1	.	5,66,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	255	.	20	.	0.996078431372549	.	A:0:C:254:G:0:T:1:N:0:O:0	.	132,133,122,122	185.293	1484.7	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	28183	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:111:T:0:N:0:O:0	.	3,62,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28197	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:0:C:5:G:0:T:136:N:0:O:1	.	4,73,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:1:C:94:G:0:T:2:N:0:O:8	.	0,66,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:84:C:0:G:2:T:0:N:0:O:3	.	2,26,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:62:G:0:T:2:N:0:O:4	.	0,16,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28469	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:0:T:125:N:0:O:0	.	3,81,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28471	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	3,77,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28552	A	T	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:121:C:0:G:0:T:5:N:0:O:0	.	5,68,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	2,25,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,55,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.016260162601626018	.	A:2:C:92:G:0:T:0:N:0:O:29	.	2,50,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,32,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:84:G:0:T:2:N:0:O:8	.	0,44,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28812	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:1:C:0:G:114:T:4:N:0:O:1	.	2,38,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	28814	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:113:G:0:T:4:N:0:O:10	.	2,46,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:91:N:0:O:3	.	0,46,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	0.9912280701754386	.	A:0:C:0:G:113:T:0:N:0:O:1	.	36,37,77,77	181.449	1557.2	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:103:T:0:N:0:O:1	.	2,21,1,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:52:G:0:T:2:N:0:O:11	.	0,31,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:75:N:0:O:1	.	0,30,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	28980	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:0:G:90:T:3:N:0:O:0	.	0,28,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.06711409395973154	.	A:0:C:136:G:0:T:10:N:0:O:3	.	0,118,10,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:1:G:0:T:0:N:0:O:0	.	0,3,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29080	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:108:N:0:O:1	.	2,64,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:83:N:0:O:13	.	1,74,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:0:G:110:T:4:N:0:O:0	.	2,68,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29186	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:1:C:0:G:89:T:3:N:0:O:2	.	2,44,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:3:G:0:T:80:N:0:O:4	.	0,66,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29311	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:118:G:0:T:3:N:0:O:18	.	1,80,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:68:C:0:G:4:T:0:N:0:O:2	.	0,41,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0821917808219178	.	A:67:C:0:G:6:T:0:N:0:O:0	.	5,26,1,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:0:G:131:T:0:N:0:O:4	.	3,68,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.12844036697247707	.	A:0:C:93:G:0:T:14:N:0:O:2	.	7,70,7,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.07317073170731707	.	A:74:C:0:G:6:T:0:N:0:O:2	.	6,17,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.0967741935483871	.	A:9:C:0:G:78:T:0:N:0:O:6	.	9,23,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29437	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:137:C:0:G:3:T:0:N:0:O:1	.	3,71,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29535	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.024539877300613498	.	A:0:C:152:G:0:T:4:N:0:O:7	.	3,94,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00153	artic-pipeline	NB06	MN908947.3	29640	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.05228758169934641	.	A:0:C:144:G:0:T:8:N:0:O:1	.	5,85,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00153	artic-pipeline	NB06	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	13	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:21:N:0:O:2	.	0,11,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	142	A	T	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:0:T:1:N:0:O:0	.	1,14,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	143	A	C	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:1:G:0:T:0:N:0:O:0	.	0,15,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	176	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,16,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	177	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:21:N:0:O:0	.	0,16,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	227	G	A	N	1	near depth threshold	Alarm	False	False	False	9	.	20	.	0.1111111111111111	.	A:1:C:0:G:8:T:0:N:0:O:0	.	1,1,0,8	.	429.5	.	depth near threshold	.	mismatch(n)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	242	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:20:T:0:N:0:O:0	.	1,16,0,5	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	254	C	G	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:1:T:0:N:0:O:0	.	1,18,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	256	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:27:T:0:N:0:O:2	.	0,20,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	72	.	20	.	0.9722222222222222	.	A:70:C:0:G:1:T:0:N:0:O:1	.	29,30,41,42	62.247	2383.7	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	491	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	2,34,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:0:G:3:T:0:N:0:O:0	.	3,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.023148148148148147	.	A:5:C:0:G:210:T:0:N:0:O:1	.	5,78,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	710	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,33,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:88:N:0:O:0	.	0,58,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	882	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:140:G:0:T:3:N:0:O:2	.	1,56,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1018	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:0:G:93:T:5:N:0:O:1	.	4,64,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:82:G:0:T:3:N:0:O:8	.	0,56,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:4:C:0:G:93:T:0:N:0:O:26	.	1,60,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:71:C:0:G:3:T:0:N:0:O:0	.	2,48,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:43:T:0:N:0:O:4	.	1,13,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:73:T:0:N:0:O:3	.	2,33,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:3:G:0:T:77:N:0:O:1	.	0,59,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.03048780487804878	.	A:0:C:0:G:156:T:5:N:0:O:3	.	0,52,5,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:48:C:1:G:0:T:0:N:0:O:1	.	0,30,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	1,9,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1723	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:1:G:0:T:85:N:0:O:0	.	2,51,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1757	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	1,49,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:0:G:2:T:0:N:0:O:1	.	0,37,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1828	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	1,64,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	1854	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:89:N:0:O:2	.	0,56,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:65:T:0:N:0:O:0	.	2,35,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:108:T:1:N:0:O:0	.	3,41,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.1	.	A:9:C:0:G:81:T:0:N:0:O:0	.	9,29,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:102:T:0:N:0:O:2	.	2,40,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	2961	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	2,35,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3146	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:67:T:0:N:0:O:0	.	0,54,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	221	.	20	.	0.9909502262443439	.	A:0:C:1:G:1:T:219:N:0:O:0	.	80,81,139,140	268.445	756.7	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:70:C:0:G:1:T:2:N:0:O:3	.	1,46,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.10588235294117647	.	A:0:C:76:G:0:T:9:N:0:O:0	.	0,64,9,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3771	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,63,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3772	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:89:N:0:O:2	.	0,67,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3773	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,59,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,26,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:79:N:0:O:15	.	0,31,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:77:T:0:N:0:O:2	.	0,34,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3875	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:0:G:89:T:3:N:0:O:0	.	1,20,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:1:G:0:T:111:N:0:O:9	.	3,42,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:0:C:46:G:0:T:2:N:0:O:0	.	0,37,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:67:G:0:T:2:N:0:O:1	.	0,37,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	3994	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:0:G:105:T:4:N:0:O:1	.	0,41,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	4010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,35,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.015748031496062992	.	A:2:C:0:G:0:T:96:N:0:O:29	.	0,78,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	4543	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:144:G:0:T:3:N:0:O:1	.	2,74,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	4656	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:119:T:0:N:0:O:0	.	2,55,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:103:G:0:T:4:N:0:O:1	.	0,64,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5031	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:120:G:0:T:5:N:0:O:1	.	1,49,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:0:T:80:N:0:O:1	.	3,30,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:4:C:0:G:124:T:0:N:0:O:0	.	0,76,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:4:C:0:G:115:T:0:N:0:O:1	.	0,68,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5656	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,57,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:98:G:0:T:3:N:0:O:2	.	0,66,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.13414634146341464	.	A:0:C:71:G:0:T:11:N:0:O:0	.	0,65,11,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,21,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:77:G:0:T:2:N:0:O:1	.	1,21,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	5968	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:0:G:126:T:3:N:0:O:6	.	0,64,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:109:G:0:T:3:N:0:O:0	.	0,70,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	118	.	20	.	0.9491525423728814	.	A:0:C:0:G:3:T:112:N:0:O:3	.	59,62,53,56	136.227	1134.2	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.10714285714285714	.	A:0:C:72:G:0:T:9:N:0:O:3	.	0,65,9,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:2:G:0:T:89:N:0:O:18	.	0,45,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	2,64,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	6255	C	T	N	18	ambiguous base in consensus	Check	False	False	False	76	.	20	.	0.07894736842105263	.	A:0:C:69:G:0:T:6:N:0:O:1	.	0,29,6,47	.	93.6	.	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.05714285714285714	.	A:0:C:97:G:0:T:6:N:0:O:2	.	0,26,6,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6307	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:1:C:0:G:107:T:3:N:0:O:0	.	1,16,2,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6385	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,28,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	6386	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,27,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6387	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:71:T:0:N:0:O:1	.	0,27,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:70:G:0:T:2:N:0:O:1	.	0,21,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6472	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:97:G:0:T:3:N:0:O:0	.	0,25,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	2,54,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6565	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	2,63,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:84:T:0:N:0:O:3	.	3,50,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,22,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:0:T:2:N:0:O:0	.	0,46,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	7036	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:97:C:0:G:0:T:2:N:0:O:5	.	0,37,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	7173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:0:C:130:G:0:T:4:N:0:O:5	.	0,82,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	7174	T	C	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.057971014492753624	.	A:0:C:8:G:0:T:130:N:0:O:0	.	5,84,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	111	.	20	.	0.06306306306306306	.	A:7:C:0:G:103:T:0:N:0:O:1	.	7,40,0,71	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	7529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:132:T:0:N:0:O:1	.	3,58,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:2:G:0:T:98:N:0:O:4	.	0,45,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:121:C:0:G:3:T:0:N:0:O:1	.	3,37,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:5:G:0:T:105:N:0:O:0	.	0,72,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	1.0	.	A:0:C:0:G:0:T:132:N:0:O:0	.	65,65,67,67	278.474	1303.9	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.10256410256410256	.	A:8:C:0:G:70:T:0:N:0:O:0	.	8,11,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:0:T:100:N:0:O:12	.	2,73,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	2,58,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,65,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	9249	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.07692307692307693	.	A:0:C:0:G:120:T:10:N:0:O:0	.	4,62,6,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:0:G:119:T:4:N:0:O:1	.	0,59,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,30,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9790	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:0:G:4:T:107:N:0:O:9	.	0,41,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:3:G:0:T:136:N:0:O:1	.	1,72,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.06666666666666667	.	A:4:C:0:G:56:T:0:N:0:O:0	.	3,21,1,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:75:G:0:T:2:N:0:O:14	.	2,44,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10148	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:113:G:0:T:3:N:0:O:2	.	1,38,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10156	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:127:G:0:T:3:N:0:O:1	.	1,42,2,89	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:0:T:111:N:0:O:0	.	0,44,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10202	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:67:G:0:T:2:N:0:O:10	.	0,36,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10365	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:3:G:0:T:134:N:0:O:0	.	1,57,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.02127659574468085	.	A:5:C:0:G:229:T:0:N:0:O:1	.	5,59,0,176	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:100:G:0:T:4:N:0:O:1	.	0,47,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:96:T:1:N:0:O:1	.	2,24,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:0:G:96:T:3:N:0:O:0	.	3,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	244	.	20	.	0.02459016393442623	.	A:0:C:6:G:0:T:235:N:0:O:3	.	0,105,6,139	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:0:T:84:N:0:O:2	.	0,56,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.12149532710280374	.	A:0:C:0:G:13:T:90:N:0:O:4	.	0,45,13,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	10995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:96:C:0:G:1:T:3:N:0:O:4	.	0,39,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:1:C:73:G:0:T:2:N:0:O:4	.	0,41,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	11186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,38,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11297	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:104:C:0:G:0:T:3:N:0:O:4	.	3,42,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:77:G:0:T:3:N:0:O:2	.	0,66,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11480	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:0:C:4:G:0:T:68:N:0:O:0	.	0,59,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11502	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:93:T:2:N:0:O:0	.	2,54,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	80	.	20	.	0.175	.	A:0:C:65:G:0:T:14:N:0:O:1	.	0,51,14,29	.	.	.	.	allele in NTC	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11677	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:95:N:0:O:1	.	0,54,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	11868	C	T	N	2	allele in negative control	Alarm	False	False	False	75	.	20	.	0.02666666666666667	.	A:0:C:73:G:0:T:2:N:0:O:0	.	0,45,2,30	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12183	C	T	C	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.024896265560165973	.	A:0:C:230:G:0:T:6:N:0:O:5	.	0,115,6,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:72:T:0:N:0:O:24	.	1,72,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12329	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:88:C:0:G:2:T:0:N:0:O:4	.	2,27,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:94:T:0:N:0:O:3	.	2,32,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12428	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,31,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	233	.	20	.	0.02575107296137339	.	A:0:C:1:G:6:T:225:N:0:O:1	.	0,114,6,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	127	.	20	.	0.9606299212598425	.	A:122:C:0:G:1:T:0:N:0:O:4	.	51,54,71,73	420.0	1256.8	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:0:C:0:G:140:T:4:N:0:O:0	.	3,66,1,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:73:G:0:T:2:N:0:O:2	.	0,66,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.041474654377880185	.	A:9:C:0:G:207:T:0:N:0:O:1	.	9,69,0,148	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12816	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:124:N:0:O:0	.	0,42,3,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:97:G:0:T:3:N:0:O:2	.	1,32,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:91:G:0:T:5:N:0:O:0	.	0,44,5,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13194	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:122:N:0:O:0	.	0,43,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:96:C:0:G:3:T:0:N:0:O:3	.	3,66,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:91:G:0:T:4:N:0:O:1	.	0,81,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:0:G:81:T:0:N:0:O:13	.	4,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13571	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.09558823529411764	.	A:0:C:0:G:108:T:13:N:0:O:15	.	5,92,8,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:118:G:0:T:0:N:0:O:14	.	3,88,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.06	.	A:9:C:0:G:110:T:0:N:0:O:31	.	9,96,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.09090909090909091	.	A:89:C:0:G:9:T:0:N:0:O:1	.	9,65,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:91:C:0:G:0:T:2:N:0:O:4	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13754	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:135:T:0:N:0:O:0	.	3,58,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:81:C:0:G:4:T:0:N:0:O:2	.	0,31,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:78:N:0:O:5	.	2,25,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	13973	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:82:N:0:O:5	.	2,26,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:126:C:0:G:3:T:0:N:0:O:0	.	3,45,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:89:T:0:N:0:O:0	.	4,27,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:109:C:0:G:0:T:3:N:0:O:1	.	3,57,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:88:C:0:G:3:T:1:N:0:O:5	.	3,56,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14888	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:120:C:0:G:0:T:3:N:0:O:1	.	3,65,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:96:C:0:G:3:T:0:N:0:O:1	.	3,42,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	3,41,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	15490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:105:T:0:N:0:O:2	.	3,60,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	15881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:111:G:0:T:3:N:0:O:0	.	0,71,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.15714285714285714	.	A:0:C:57:G:0:T:11:N:0:O:2	.	0,35,11,35	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,66,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	16114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:128:G:0:T:3:N:0:O:1	.	1,68,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16221	G	A	G	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:2:C:0:G:61:T:0:N:0:O:1	.	2,43,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:0:G:2:T:82:N:0:O:0	.	1,26,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:0:G:94:T:2:N:0:O:1	.	0,34,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.06363636363636363	.	A:0:C:0:G:100:T:7:N:0:O:3	.	4,46,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:98:T:0:N:0:O:1	.	4,18,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:97:C:0:G:4:T:0:N:0:O:6	.	4,30,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.08045977011494253	.	A:1:C:77:G:0:T:7:N:0:O:2	.	0,51,7,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:3:T:98:N:0:O:7	.	0,60,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	0,47,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:1:C:96:G:0:T:2:N:0:O:5	.	0,64,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:71:C:2:G:0:T:0:N:0:O:1	.	2,36,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:4:C:0:G:155:T:0:N:0:O:13	.	4,40,0,132	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.020100502512562814	.	A:195:C:0:G:4:T:0:N:0:O:0	.	4,81,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:69:T:0:N:0:O:0	.	2,15,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:1:G:0:T:72:N:0:O:1	.	3,19,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:2:T:0:N:0:O:1	.	2,46,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:72:G:0:T:2:N:0:O:1	.	0,48,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:104:T:0:N:0:O:0	.	3,27,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:96:C:0:G:0:T:3:N:0:O:4	.	0,47,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	201	.	20	.	0.03482587064676617	.	A:0:C:179:G:0:T:7:N:0:O:15	.	1,116,6,85	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	62	.	20	.	0.06451612903225806	.	A:0:C:58:G:0:T:4:N:0:O:0	.	0,46,4,16	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	84	.	20	.	0.047619047619047616	.	A:73:C:0:G:0:T:4:N:0:O:7	.	0,42,4,42	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:99:T:0:N:0:O:0	.	0,74,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18318	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.024752475247524754	.	A:0:C:0:G:197:T:5:N:0:O:0	.	2,48,3,154	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.03424657534246575	.	A:0:C:140:G:0:T:5:N:0:O:1	.	0,86,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18335	A	T	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:125:C:0:G:0:T:3:N:0:O:0	.	0,65,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18378	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:121:C:0:G:4:T:0:N:0:O:1	.	4,48,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18441	C	A	C	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.03048780487804878	.	A:5:C:158:G:0:T:0:N:0:O:1	.	5,76,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18570	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:75:G:0:T:2:N:0:O:4	.	0,73,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	18735	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:81:C:4:G:0:T:0:N:0:O:6	.	0,55,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	102	.	20	.	0.9411764705882353	.	A:0:C:96:G:0:T:6:N:0:O:0	.	45,45,51,57	206.227	1548.6	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	18738	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:0:G:4:T:114:N:0:O:1	.	0,52,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:96:G:0:T:4:N:0:O:0	.	0,43,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:119:T:0:N:0:O:0	.	2,47,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	18994	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:125:T:0:N:0:O:6	.	3,39,0,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19017	C	T	C	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:0:C:167:G:0:T:4:N:0:O:1	.	1,91,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:97:C:0:G:2:T:0:N:0:O:5	.	2,37,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.2465753424657534	.	A:0:C:55:G:0:T:18:N:0:O:0	.	0,47,18,26	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,55,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:105:N:0:O:1	.	0,50,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.022857142857142857	.	A:4:C:1:G:0:T:135:N:0:O:35	.	0,53,4,122	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:0:T:3:N:0:O:0	.	0,43,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19944	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:119:G:0:T:3:N:0:O:4	.	0,30,3,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19984	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	1,18,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.06	.	A:0:C:0:G:3:T:47:N:0:O:0	.	0,18,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	20179	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:129:G:0:T:3:N:0:O:1	.	1,29,2,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	20378	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:90:T:2:N:0:O:0	.	1,59,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	20542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	279	.	20	.	0.02867383512544803	.	A:0:C:8:G:0:T:257:N:0:O:14	.	0,119,8,160	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	20922	G	T	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:0:G:133:T:4:N:0:O:1	.	2,52,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:110:T:0:N:0:O:0	.	4,36,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:0:G:2:T:65:N:0:O:0	.	1,7,1,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21138	G	A	G	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.027472527472527472	.	A:5:C:0:G:175:T:0:N:0:O:2	.	5,56,0,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.11320754716981132	.	A:0:C:0:G:83:T:12:N:0:O:11	.	0,62,12,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:0:C:89:G:0:T:6:N:0:O:1	.	0,45,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21209	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:0:T:90:N:0:O:13	.	0,40,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21235	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,47,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21421	A	G	A	16	ignore low frequency variant	Pass	False	False	True	271	.	20	.	0.02214022140221402	.	A:207:C:0:G:6:T:0:N:0:O:58	.	6,128,0,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:89:C:0:G:4:T:0:N:0:O:0	.	4,21,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:4:C:0:G:127:T:0:N:0:O:2	.	4,56,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21636	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:65:G:0:T:2:N:0:O:0	.	0,42,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.09090909090909091	.	A:0:C:77:G:0:T:8:N:0:O:3	.	8,29,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	21984	T	G	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:0:G:3:T:110:N:0:O:4	.	3,66,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	253	.	20	.	0.023715415019762844	.	A:245:C:0:G:6:T:0:N:0:O:2	.	6,157,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22132	G	A	N	2	allele in negative control	Alarm	False	False	False	192	.	20	.	0.03125	.	A:6:C:0:G:185:T:0:N:0:O:1	.	6,127,0,65	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	270	.	20	.	0.037037037037037035	.	A:259:C:0:G:0:T:10:N:0:O:1	.	10,186,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	158	.	20	.	0.0379746835443038	.	A:0:C:0:G:6:T:152:N:0:O:0	.	6,79,0,79	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22329	C	G	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:1:T:0:N:0:O:0	.	1,14,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22330	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	1,11,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22372	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,21,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,20,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22403	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.05263157894736842	.	A:2:C:0:G:34:T:0:N:0:O:2	.	2,21,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22429	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,12,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22430	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,13,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22453	A	C	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.06060606060606061	.	A:30:C:2:G:0:T:0:N:0:O:1	.	2,18,0,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	0,18,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22490	A	T	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:23:C:0:G:1:T:1:N:0:O:0	.	1,13,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22492	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.09090909090909091	.	A:19:C:0:G:2:T:0:N:0:O:1	.	0,11,2,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.028169014084507043	.	A:0:C:0:G:204:T:6:N:0:O:3	.	0,95,6,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	22899	G	T	G	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:0:C:0:G:179:T:4:N:0:O:0	.	3,93,1,90	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:124:C:0:G:5:T:0:N:0:O:0	.	0,53,5,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23248	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:95:G:0:T:2:N:0:O:3	.	1,39,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	23286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:118:G:0:T:3:N:0:O:0	.	0,62,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,35,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:106:N:0:O:3	.	0,48,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23586	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:109:C:0:G:3:T:0:N:0:O:1	.	3,35,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23587	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:123:T:0:N:0:O:0	.	3,38,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.1	.	A:0:C:90:G:0:T:10:N:0:O:0	.	0,65,10,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:5:G:0:T:99:N:0:O:0	.	0,59,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23904	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:86:N:0:O:1	.	0,42,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.03676470588235294	.	A:131:C:0:G:0:T:5:N:0:O:0	.	5,62,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.07575757575757576	.	A:5:C:0:G:0:T:61:N:0:O:0	.	5,24,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	23997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:82:G:0:T:4:N:0:O:1	.	1,59,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	122	.	20	.	1.0	.	A:0:C:0:G:0:T:122:N:0:O:0	.	53,53,69,69	210.0	682.0	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:91:T:0:N:0:O:0	.	4,20,1,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:0:C:70:G:0:T:4:N:0:O:0	.	0,59,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:62:G:0:T:2:N:0:O:1	.	0,52,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:5:C:0:G:75:T:0:N:0:O:0	.	5,20,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:73:T:0:N:0:O:1	.	4,18,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24290	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:1:C:0:G:101:T:3:N:0:O:2	.	1,68,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24326	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:101:N:0:O:0	.	3,47,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24422	C	T	C	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.0196078431372549	.	A:3:C:183:G:0:T:4:N:0:O:14	.	0,114,4,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:133:G:0:T:0:N:0:O:3	.	3,63,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:136:C:0:G:0:T:3:N:0:O:10	.	3,101,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:0:C:133:G:0:T:4:N:0:O:5	.	0,85,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05982905982905983	.	A:0:C:110:G:0:T:7:N:0:O:0	.	1,90,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	2,75,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24721	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:122:N:0:O:4	.	3,90,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24858	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:114:T:0:N:0:O:8	.	2,68,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24861	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:113:G:0:T:3:N:0:O:3	.	2,71,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	24933	G	T	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.09090909090909091	.	A:0:C:0:G:100:T:10:N:0:O:0	.	4,67,6,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	24953	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,69,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25358	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:125:C:3:G:0:T:0:N:0:O:0	.	3,63,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:105:C:0:G:3:T:0:N:0:O:1	.	3,38,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:0:G:4:T:104:N:0:O:0	.	4,37,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25508	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:120:G:0:T:3:N:0:O:1	.	0,71,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25509	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:112:G:0:T:4:N:0:O:0	.	0,70,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:98:G:0:T:2:N:0:O:3	.	0,74,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	25588	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:2:T:0:N:0:O:1	.	0,35,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,74,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25697	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	2,64,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:71:C:2:G:0:T:0:N:0:O:2	.	2,52,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:104:G:0:T:3:N:0:O:0	.	1,88,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:84:C:0:G:3:T:0:N:0:O:2	.	3,54,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,66,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,55,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26192	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:137:G:0:T:3:N:0:O:1	.	1,95,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26199	G	T	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:0:G:134:T:3:N:0:O:3	.	1,87,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	26221	G	T	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:0:C:0:G:156:T:4:N:0:O:2	.	0,137,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:4:C:0:G:168:T:0:N:0:O:8	.	4,82,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:78:N:0:O:0	.	1,53,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:101:G:0:T:4:N:0:O:0	.	0,80,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:88:N:0:O:1	.	2,68,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26456	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:97:G:0:T:3:N:0:O:0	.	1,55,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	26526	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:100:T:3:N:0:O:0	.	3,67,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,46,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,29,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.042328042328042326	.	A:0:C:181:G:0:T:8:N:0:O:0	.	0,156,8,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0273972602739726	.	A:0:C:6:G:0:T:213:N:0:O:0	.	0,161,6,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:86:C:0:G:0:T:3:N:0:O:2	.	3,26,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:3:C:0:G:70:T:0:N:0:O:0	.	3,9,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	129	.	20	.	0.9922480620155039	.	A:0:C:128:G:0:T:0:N:0:O:1	.	79,80,49,49	264.466	1372.4	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	27017	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:2:G:0:T:98:N:0:O:4	.	0,53,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.08571428571428572	.	A:6:C:0:G:64:T:0:N:0:O:0	.	6,24,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	27098	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:94:N:0:O:0	.	2,46,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	27103	C	T	N	2	allele in negative control	Alarm	False	False	False	81	.	20	.	0.13580246913580246	.	A:0:C:70:G:0:T:11:N:0:O:0	.	0,62,11,19	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:0:C:7:G:0:T:94:N:0:O:0	.	0,44,7,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.05714285714285714	.	A:0:C:120:G:0:T:8:N:0:O:12	.	0,55,8,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:96:G:0:T:0:N:0:O:2	.	3,49,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:105:C:0:G:0:T:3:N:0:O:23	.	3,80,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	0.984251968503937	.	A:0:C:125:G:1:T:0:N:0:O:1	.	81,82,44,45	410.692	1601.5	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	258	.	20	.	0.9883720930232558	.	A:0:C:255:G:0:T:2:N:0:O:1	.	155,158,100,100	227.392	1376.3	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:0:T:70:N:0:O:2	.	0,40,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:40:G:0:T:1:N:0:O:1	.	0,23,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,44,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:1:C:84:G:0:T:2:N:0:O:5	.	0,71,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	0,16,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28796	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:109:T:3:N:0:O:0	.	2,16,1,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28820	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:63:N:0:O:0	.	0,29,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28894	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:0:T:84:N:0:O:3	.	0,34,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	107	.	20	.	1.0	.	A:0:C:0:G:107:T:0:N:0:O:0	.	24,24,83,83	262.453	1474.7	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	28921	T	C	C	14	new position at high frequency	Pass	False	True	True	121	.	20	.	1.0	.	A:0:C:121:G:0:T:0:N:0:O:0	.	26,26,95,95	342.453	1143.8	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:103:G:0:T:4:N:0:O:3	.	0,90,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:77:T:0:N:0:O:1	.	3,36,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29090	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,43,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:98:G:0:T:0:N:0:O:2	.	2,31,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:79:G:0:T:3:N:0:O:1	.	2,32,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	1,33,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:85:C:0:G:3:T:0:N:0:O:3	.	0,40,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:0:G:3:T:0:N:0:O:1	.	3,15,0,114	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:4:C:1:G:136:T:0:N:0:O:3	.	4,21,0,123	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00154	artic-pipeline	NB07	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	114	.	20	.	0.7894736842105263	.	A:1:C:0:G:90:T:0:N:0:O:23	.	33,57,57,57	447.285	850.0	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	11074	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00154	artic-pipeline	NB07	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	65	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,5,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.15151515151515152	.	A:0:C:28:G:0:T:5:N:0:O:0	.	0,5,5,28	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:0:C:3:G:0:T:48:N:0:O:1	.	0,6,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:39:G:0:T:1:N:0:O:1	.	0,10,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	176	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	0,11,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,11,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.075	.	A:0:C:33:G:0:T:3:N:0:O:4	.	0,11,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	181	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:25:N:0:O:0	.	0,11,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	55	.	20	.	0.8909090909090909	.	A:0:C:0:G:0:T:49:N:0:O:6	.	8,14,41,41	70.0	1799.3	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	299	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:0:T:1:N:0:O:0	.	0,8,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	304	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.047619047619047616	.	A:0:C:40:G:0:T:2:N:0:O:0	.	0,2,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	350	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,33,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:93:T:2:N:0:O:2	.	1,36,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	435	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:0:G:1:T:0:N:0:O:1	.	0,24,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	570	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:65:C:0:G:3:T:0:N:0:O:3	.	2,29,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.08163265306122448	.	A:0:C:0:G:4:T:43:N:0:O:2	.	4,23,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	577	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:46:N:0:O:3	.	1,21,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:46:C:0:G:1:T:0:N:0:O:1	.	0,25,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	624	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:44:C:1:G:0:T:0:N:0:O:2	.	0,24,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.022598870056497175	.	A:4:C:0:G:171:T:0:N:0:O:2	.	4,70,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:4:G:0:T:127:N:0:O:0	.	2,71,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	1047	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:113:C:0:G:3:T:0:N:0:O:1	.	2,63,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:77:G:0:T:5:N:0:O:4	.	1,50,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:77:C:0:G:3:T:0:N:0:O:0	.	1,34,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:103:T:0:N:0:O:29	.	3,63,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,57,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	1216	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	3,64,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	0,57,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06956521739130435	.	A:107:C:0:G:8:T:0:N:0:O:0	.	1,59,7,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2081	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:121:T:0:N:0:O:1	.	2,58,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:79:T:0:N:0:O:0	.	3,41,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.13829787234042554	.	A:13:C:0:G:81:T:0:N:0:O:0	.	13,33,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	116	.	20	.	0.9913793103448276	.	A:0:C:0:G:0:T:115:N:0:O:1	.	37,38,78,78	349.237	1215.6	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	2451	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:96:N:0:O:2	.	0,36,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:3:T:0:N:0:O:0	.	3,55,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2741	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.04929577464788732	.	A:0:C:0:G:135:T:7:N:0:O:0	.	3,71,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2754	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:0:T:132:N:0:O:1	.	0,76,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:124:C:0:G:3:T:0:N:0:O:3	.	3,57,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2886	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,52,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:2:G:0:T:0:N:0:O:1	.	0,22,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	118	.	20	.	0.7457627118644068	.	A:0:C:0:G:0:T:88:N:0:O:30	.	36,66,52,52	342.453	1266.3	.	.	.	.	mixed position	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.06	.	A:0:C:0:G:84:T:6:N:0:O:10	.	0,53,6,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	3156	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:84:G:0:T:2:N:0:O:2	.	0,57,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.06976744186046512	.	A:0:C:79:G:0:T:6:N:0:O:1	.	0,67,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3665	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:0:C:0:G:109:T:5:N:0:O:1	.	2,53,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3698	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:84:G:0:T:4:N:0:O:6	.	1,35,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:0:G:2:T:68:N:0:O:13	.	0,38,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:0:G:119:T:3:N:0:O:6	.	2,62,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	0,54,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:0:T:121:N:0:O:7	.	3,62,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:75:G:0:T:3:N:0:O:0	.	0,59,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:112:N:0:O:2	.	0,59,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:114:G:0:T:3:N:0:O:5	.	0,62,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	284	.	20	.	0.02464788732394366	.	A:0:C:7:G:0:T:277:N:0:O:0	.	4,110,3,174	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.1206896551724138	.	A:0:C:48:G:0:T:7:N:0:O:3	.	0,33,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.043795620437956206	.	A:6:C:0:G:0:T:105:N:0:O:26	.	0,51,6,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:0:C:4:G:0:T:64:N:0:O:2	.	0,43,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.020833333333333332	.	A:0:C:216:G:0:T:5:N:0:O:19	.	0,128,5,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.028925619834710745	.	A:0:C:0:G:227:T:7:N:0:O:8	.	0,136,7,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4371	G	A	G	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.023391812865497075	.	A:4:C:0:G:167:T:0:N:0:O:0	.	0,126,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.03225806451612903	.	A:0:C:0:G:187:T:7:N:0:O:23	.	0,146,7,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.03571428571428571	.	A:7:C:0:G:187:T:0:N:0:O:2	.	0,93,7,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:0:C:123:G:0:T:5:N:0:O:3	.	0,54,5,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4454	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.08	.	A:12:C:0:G:137:T:0:N:0:O:1	.	4,64,8,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:112:C:0:G:0:T:3:N:0:O:6	.	0,67,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.03571428571428571	.	A:0:C:0:G:5:T:126:N:0:O:9	.	0,68,5,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:137:G:0:T:3:N:0:O:10	.	0,74,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,67,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:68:T:0:N:0:O:0	.	2,10,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:92:T:0:N:0:O:1	.	3,53,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	259	.	20	.	0.023166023166023165	.	A:0:C:241:G:0:T:6:N:0:O:12	.	0,138,6,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	0,46,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.14814814814814814	.	A:0:C:69:G:0:T:12:N:0:O:0	.	0,63,12,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5776	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.11304347826086956	.	A:102:C:13:G:0:T:0:N:0:O:0	.	6,43,7,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5845	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	1,51,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5940	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:94:N:0:O:0	.	2,42,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:95:G:0:T:4:N:0:O:4	.	0,49,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.13636363636363635	.	A:0:C:75:G:0:T:12:N:0:O:1	.	0,63,12,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6135	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:0:T:121:N:0:O:0	.	0,63,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6138	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.10317460317460317	.	A:0:C:113:G:0:T:13:N:0:O:0	.	6,63,7,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:142:G:0:T:3:N:0:O:3	.	0,98,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6317	C	A	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:4:C:138:G:0:T:0:N:0:O:1	.	1,91,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:3:G:0:T:143:N:0:O:3	.	0,96,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:114:G:0:T:3:N:0:O:6	.	0,61,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6702	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:0:T:119:N:0:O:2	.	0,60,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.08108108108108109	.	A:9:C:0:G:101:T:0:N:0:O:1	.	7,53,2,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:0:C:0:G:122:T:4:N:0:O:2	.	2,73,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:91:N:0:O:0	.	2,49,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:108:G:0:T:4:N:0:O:1	.	0,69,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7030	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:2:G:0:T:98:N:0:O:9	.	0,62,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7152	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,29,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:41:T:0:N:0:O:1	.	1,15,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:42:T:0:N:0:O:1	.	1,21,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7266	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:45:N:0:O:1	.	0,31,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:51:G:0:T:2:N:0:O:0	.	1,34,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7277	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	1,12,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7289	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:44:T:1:N:0:O:1	.	0,23,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:88:T:0:N:0:O:0	.	5,24,0,69	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	7594	C	T	N	2	allele in negative control	Alarm	False	False	False	110	.	20	.	0.03636363636363636	.	A:0:C:86:G:0:T:4:N:0:O:20	.	0,94,4,16	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:99:N:0:O:11	.	1,55,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	7993	A	G	A	16	ignore low frequency variant	Pass	False	False	True	289	.	20	.	0.020761245674740483	.	A:280:C:0:G:6:T:0:N:0:O:3	.	6,126,0,163	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8370	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:69:C:0:G:2:T:0:N:0:O:0	.	2,33,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:1:T:0:N:0:O:0	.	1,18,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8512	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.14925373134328357	.	A:57:C:0:G:10:T:0:N:0:O:0	.	4,37,6,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:0:C:3:G:0:T:55:N:0:O:0	.	0,34,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	1,18,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,17,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:126:G:0:T:3:N:0:O:2	.	0,88,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8781	G	T	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:0:C:0:G:143:T:4:N:0:O:0	.	2,70,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.1348314606741573	.	A:12:C:1:G:74:T:0:N:0:O:2	.	12,17,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	8956	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.1414141414141414	.	A:0:C:85:G:0:T:14:N:0:O:0	.	8,32,6,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	9023	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.11811023622047244	.	A:112:C:0:G:15:T:0:N:0:O:0	.	10,64,5,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	9141	G	C	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:117:T:0:N:0:O:4	.	0,53,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:89:G:0:T:3:N:0:O:1	.	3,34,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,56,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.056	.	A:0:C:0:G:116:T:7:N:0:O:2	.	0,58,7,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	9714	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.017094017094017096	.	A:2:C:93:G:0:T:1:N:0:O:21	.	2,91,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	9893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:114:G:0:T:3:N:0:O:13	.	0,67,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10007	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:0:C:0:G:121:T:5:N:0:O:5	.	2,68,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,61,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10139	G	A	G	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.021367521367521368	.	A:5:C:0:G:229:T:0:N:0:O:0	.	5,101,0,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:83:T:0:N:0:O:1	.	3,26,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	1,53,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:0:C:110:G:0:T:5:N:0:O:7	.	0,70,5,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.046875	.	A:0:C:0:G:122:T:6:N:0:O:0	.	6,53,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10793	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:82:T:2:N:0:O:2	.	1,45,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:1:G:2:T:65:N:0:O:3	.	0,37,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:73:G:0:T:0:N:0:O:13	.	2,53,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	10995	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:56:C:0:G:3:T:0:N:0:O:3	.	3,30,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11011	G	T	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:0:G:78:T:2:N:0:O:2	.	2,41,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:0:G:119:T:3:N:0:O:1	.	3,52,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11386	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,59,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	122	.	20	.	0.05737704918032787	.	A:0:C:112:G:0:T:7:N:0:O:3	.	0,88,7,34	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:140:C:0:G:1:T:3:N:0:O:0	.	2,92,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11868	C	T	N	2	allele in negative control	Alarm	False	False	False	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,63,2,34	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11906	G	A	G	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.03070175438596491	.	A:7:C:0:G:220:T:0:N:0:O:1	.	3,123,4,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:61:C:0:G:2:T:0:N:0:O:2	.	0,44,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:84:G:0:T:2:N:0:O:23	.	0,74,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12201	A	G	A	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:190:C:0:G:5:T:0:N:0:O:0	.	0,64,5,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12331	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:4:C:0:G:131:T:0:N:0:O:0	.	2,55,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12381	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.047244094488188976	.	A:120:C:0:G:6:T:0:N:0:O:1	.	5,60,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:106:T:0:N:0:O:9	.	3,37,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	251	.	20	.	0.02390438247011952	.	A:1:C:0:G:6:T:241:N:0:O:3	.	0,107,6,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12494	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:118:N:0:O:1	.	1,56,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:81:C:1:G:2:T:0:N:0:O:1	.	2,35,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.12048192771084337	.	A:0:C:71:G:0:T:10:N:0:O:2	.	0,56,10,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:119:N:0:O:4	.	2,45,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13330	T	A	T	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:4:C:0:G:0:T:176:N:0:O:4	.	4,108,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13335	C	T	C	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.06930693069306931	.	A:0:C:187:G:0:T:14:N:0:O:1	.	10,140,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13405	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:99:G:0:T:3:N:0:O:0	.	0,63,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13459	G	A	G	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.01764705882352941	.	A:3:C:0:G:135:T:0:N:0:O:32	.	0,95,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.11940298507462686	.	A:0:C:59:G:0:T:8:N:0:O:0	.	0,56,8,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.10185185185185185	.	A:11:C:0:G:88:T:0:N:0:O:9	.	11,42,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:1:C:69:G:0:T:2:N:0:O:0	.	0,43,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:81:G:0:T:3:N:0:O:1	.	1,32,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:4:C:118:G:0:T:0:N:0:O:12	.	4,64,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.045112781954887216	.	A:6:C:0:G:119:T:0:N:0:O:8	.	6,40,0,93	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13709	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:0:T:84:N:0:O:9	.	2,23,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.03508771929824561	.	A:0:C:164:G:0:T:6:N:0:O:1	.	0,106,6,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:4:C:0:G:125:T:0:N:0:O:0	.	4,55,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,35,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	74	.	20	.	0.9864864864864865	.	A:0:C:1:G:0:T:73:N:0:O:0	.	34,34,39,40	392.882	1195.6	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	14487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:90:C:0:G:5:T:0:N:0:O:1	.	5,38,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:94:T:0:N:0:O:1	.	1,37,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,29,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14678	G	C	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.07407407407407407	.	A:0:C:8:G:100:T:0:N:0:O:0	.	4,51,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14679	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.104	.	A:0:C:0:G:13:T:111:N:0:O:1	.	4,69,9,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:0:T:2:N:0:O:2	.	2,54,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	14952	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:4:G:0:T:113:N:0:O:1	.	3,49,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15020	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,50,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15076	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:4:G:0:T:93:N:0:O:0	.	0,51,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:94:T:0:N:0:O:1	.	3,34,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15104	G	T	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:0:G:55:T:2:N:0:O:0	.	2,37,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:1:C:90:G:0:T:2:N:0:O:3	.	1,32,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:123:T:0:N:0:O:0	.	3,53,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.012987012987012988	.	A:0:C:1:G:0:T:44:N:0:O:32	.	0,57,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	15952	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	55	.	20	.	0.3090909090909091	.	A:0:C:38:G:0:T:17:N:0:O:0	.	0,24,17,31	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	16029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	0,59,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16058	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.09523809523809523	.	A:0:C:111:G:0:T:12:N:0:O:3	.	7,32,5,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:93:G:0:T:4:N:0:O:0	.	0,57,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:1:C:77:G:0:T:2:N:0:O:0	.	0,55,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:2:C:0:G:110:T:3:N:0:O:1	.	0,36,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:107:G:0:T:7:N:0:O:1	.	0,67,7,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16713	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:111:N:0:O:5	.	0,60,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16728	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.031446540880503145	.	A:0:C:5:G:0:T:153:N:0:O:1	.	4,73,1,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:95:G:0:T:5:N:0:O:4	.	0,65,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.07216494845360824	.	A:0:C:0:G:7:T:86:N:0:O:4	.	0,44,7,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:98:C:0:G:4:T:0:N:0:O:0	.	2,34,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16949	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:72:G:0:T:2:N:0:O:0	.	0,41,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:72:C:2:G:0:T:0:N:0:O:0	.	2,21,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17124	T	C	T	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:0:C:4:G:0:T:193:N:0:O:1	.	2,103,2,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17253	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:5:G:0:T:115:N:0:O:0	.	3,71,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17403	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.05172413793103448	.	A:0:C:110:G:0:T:6:N:0:O:0	.	4,63,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:0:C:74:G:0:T:4:N:0:O:1	.	0,54,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	17543	T	A	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.04477611940298507	.	A:6:C:0:G:0:T:128:N:0:O:0	.	4,65,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17549	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:0:G:4:T:95:N:0:O:11	.	3,67,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17550	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:5:C:99:G:0:T:0:N:0:O:12	.	3,62,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17556	T	A	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.049586776859504134	.	A:6:C:0:G:0:T:115:N:0:O:0	.	4,62,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,52,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:76:G:0:T:3:N:0:O:4	.	0,40,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17625	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04032258064516129	.	A:119:C:5:G:0:T:0:N:0:O:0	.	3,61,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17649	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:83:G:0:T:2:N:0:O:3	.	0,42,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	188	.	20	.	0.03723404255319149	.	A:0:C:170:G:0:T:7:N:0:O:11	.	0,113,7,75	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	66	.	20	.	0.045454545454545456	.	A:0:C:63:G:0:T:3:N:0:O:0	.	0,47,3,19	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	87	.	20	.	0.04597701149425287	.	A:76:C:0:G:1:T:4:N:0:O:6	.	0,44,4,43	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17878	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:100:G:0:T:0:N:0:O:8	.	0,68,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	17947	G	A	N	2	allele in negative control	Alarm	False	False	False	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,26,0,62	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:0:C:126:G:0:T:5:N:0:O:0	.	0,69,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18338	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:132:G:0:T:3:N:0:O:0	.	0,73,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:97:N:0:O:0	.	1,19,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18398	T	C	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.10204081632653061	.	A:0:C:15:G:0:T:131:N:0:O:1	.	3,62,12,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,23,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:1:C:0:G:46:T:0:N:0:O:7	.	0,35,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:31:C:0:G:1:T:2:N:0:O:2	.	0,16,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18754	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.045112781954887216	.	A:0:C:125:G:0:T:6:N:0:O:2	.	2,53,4,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	18883	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	2,35,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:0:C:128:G:0:T:4:N:0:O:4	.	0,80,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19285	G	T	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.09302325581395349	.	A:0:C:0:G:38:T:4:N:0:O:1	.	0,18,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19302	A	T	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:0:T:1:N:0:O:0	.	0,17,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:35:N:0:O:1	.	0,18,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,17,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19328	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:36:G:0:T:1:N:0:O:8	.	1,20,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	19338	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	1,10,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	1,9,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19347	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,14,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19524	C	G	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:34:G:1:T:0:N:0:O:3	.	0,20,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19528	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:33:T:0:N:0:O:1	.	1,11,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19562	T	A	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:0:T:30:N:0:O:3	.	1,17,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19563	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:20:T:1:N:0:O:1	.	1,4,0,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:129:N:0:O:4	.	0,82,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19747	T	C	T	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:0:C:4:G:0:T:146:N:0:O:0	.	0,71,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:132:C:0:G:0:T:3:N:0:O:1	.	0,75,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.07272727272727272	.	A:0:C:0:G:4:T:51:N:0:O:0	.	0,29,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	20208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.02654867256637168	.	A:6:C:0:G:201:T:0:N:0:O:19	.	6,69,0,157	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.029850746268656716	.	A:6:C:0:G:192:T:0:N:0:O:3	.	6,55,0,146	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	20588	A	T	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:123:C:0:G:0:T:3:N:0:O:0	.	3,76,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	20589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:134:G:0:T:3:N:0:O:3	.	3,77,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	20611	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:90:G:0:T:2:N:0:O:7	.	1,50,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:0:G:2:T:74:N:0:O:0	.	1,9,1,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.10126582278481013	.	A:0:C:0:G:63:T:8:N:0:O:8	.	0,53,8,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21220	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:28:T:0:N:0:O:1	.	1,14,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:25:N:0:O:10	.	1,23,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:84:G:0:T:3:N:0:O:3	.	0,49,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:97:C:0:G:0:T:5:N:0:O:1	.	4,30,1,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:95:C:0:G:6:T:0:N:0:O:0	.	6,26,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:0:G:120:T:0:N:0:O:0	.	4,48,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21591	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:113:N:0:O:1	.	0,57,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:84:G:0:T:3:N:0:O:2	.	1,24,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,69,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.045454545454545456	.	A:125:C:0:G:6:T:0:N:0:O:1	.	5,61,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:132:T:0:N:0:O:7	.	3,68,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	22036	A	G	N	2	allele in negative control	Alarm	False	False	False	154	.	20	.	0.032467532467532464	.	A:148:C:0:G:5:T:0:N:0:O:1	.	5,85,0,69	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	22121	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:124:C:3:G:0:T:0:N:0:O:1	.	0,94,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	22132	G	A	N	2	allele in negative control	Alarm	False	False	False	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:112:T:0:N:0:O:0	.	3,64,0,51	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.03896103896103896	.	A:148:C:0:G:0:T:6:N:0:O:0	.	4,102,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:4:T:102:N:0:O:0	.	4,45,0,61	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	22577	G	C	G	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.0	.	A:0:C:0:G:153:T:0:N:0:O:1	.	0,65,0,89	2.592	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:4:C:0:G:157:T:0:N:0:O:1	.	4,31,0,131	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	22785	G	A	G	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:4:C:0:G:181:T:0:N:0:O:1	.	4,48,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:111:C:0:G:4:T:0:N:0:O:1	.	3,47,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	0,84,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	0.9448818897637795	.	A:0:C:0:G:120:T:0:N:0:O:7	.	67,74,53,53	140.0	1569.9	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	23424	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:123:G:0:T:3:N:0:O:1	.	2,67,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23868	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	0,61,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.14285714285714285	.	A:0:C:89:G:0:T:15:N:0:O:1	.	0,61,15,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,61,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23947	A	C	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.033112582781456956	.	A:145:C:5:G:0:T:0:N:0:O:1	.	2,58,3,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:2:C:0:G:0:T:51:N:0:O:0	.	2,21,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:101:T:1:N:0:O:2	.	3,22,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,50,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:64:G:0:T:2:N:0:O:9	.	0,64,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24290	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:98:T:2:N:0:O:1	.	0,52,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24336	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.1	.	A:108:C:0:G:12:T:0:N:0:O:0	.	4,48,8,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:126:T:3:N:0:O:2	.	0,57,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,36,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:138:G:0:T:3:N:0:O:1	.	0,75,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:97:G:0:T:3:N:0:O:0	.	0,61,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.046357615894039736	.	A:7:C:0:G:121:T:0:N:0:O:23	.	7,89,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:101:C:0:G:5:T:0:N:0:O:0	.	5,61,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	24933	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.05084745762711865	.	A:0:C:0:G:112:T:6:N:0:O:0	.	4,77,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	24954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	1,60,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25064	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:125:T:0:N:0:O:1	.	3,72,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25368	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.11764705882352941	.	A:75:C:0:G:10:T:0:N:0:O:0	.	4,47,6,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0891089108910891	.	A:0:C:0:G:9:T:91:N:0:O:1	.	9,34,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:105:C:0:G:3:T:0:N:0:O:2	.	3,49,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25518	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:82:N:0:O:8	.	1,57,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25554	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:2:G:0:T:69:N:0:O:0	.	0,33,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	112	.	20	.	1.0	.	A:0:C:0:G:0:T:112:N:0:O:0	.	49,49,63,63	280.0	1903.1	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	25626	C	T	C	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.041666666666666664	.	A:0:C:197:G:0:T:9:N:0:O:10	.	4,97,5,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:100:N:0:O:0	.	0,64,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:74:C:2:G:0:T:0:N:0:O:3	.	1,52,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:100:G:0:T:3:N:0:O:0	.	0,71,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:2:G:0:T:68:N:0:O:0	.	0,43,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:2:T:0:N:0:O:1	.	2,26,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	25996	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.07633587786259542	.	A:0:C:0:G:120:T:10:N:0:O:1	.	6,75,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26044	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:0:C:126:G:0:T:4:N:0:O:10	.	0,88,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26233	G	T	T	14	new position at high frequency	Pass	False	True	True	259	.	20	.	1.0	.	A:0:C:0:G:0:T:259:N:0:O:0	.	134,134,125,125	279.237	1449.9	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26396	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.05426356589147287	.	A:0:C:7:G:0:T:122:N:0:O:0	.	3,69,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:95:T:0:N:0:O:1	.	2,49,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26521	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:91:G:0:T:0:N:0:O:2	.	1,58,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:87:G:0:T:4:N:0:O:0	.	1,59,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:85:C:0:G:2:T:0:N:0:O:2	.	2,33,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:95:T:0:N:0:O:0	.	4,34,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,30,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26596	G	T	G	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02358490566037736	.	A:0:C:0:G:206:T:5:N:0:O:1	.	3,128,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.029197080291970802	.	A:129:C:0:G:0:T:4:N:0:O:4	.	4,53,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.07692307692307693	.	A:8:C:0:G:96:T:0:N:0:O:0	.	8,21,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26893	T	C	N	2	allele in negative control	Alarm	False	False	False	82	.	20	.	0.024390243902439025	.	A:0:C:2:G:0:T:76:N:0:O:4	.	0,61,2,21	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	0,57,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:94:C:0:G:3:T:0:N:0:O:1	.	3,33,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,17,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27103	C	T	N	2	allele in negative control	Alarm	False	False	False	69	.	20	.	0.08695652173913043	.	A:0:C:63:G:0:T:6:N:0:O:0	.	0,55,6,14	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:78:G:0:T:2:N:0:O:1	.	0,60,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27406	C	T	C	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.016216216216216217	.	A:0:C:137:G:0:T:3:N:0:O:45	.	2,90,1,95	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06956521739130435	.	A:0:C:8:G:0:T:107:N:0:O:0	.	0,55,8,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.05202312138728324	.	A:0:C:149:G:0:T:9:N:0:O:15	.	0,77,9,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:0:T:2:N:0:O:2	.	0,53,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:92:G:1:T:0:N:0:O:0	.	3,51,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:107:C:0:G:0:T:4:N:0:O:30	.	4,95,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:4:C:0:G:1:T:71:N:0:O:3	.	2,36,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28247	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:119:C:0:G:0:T:3:N:0:O:1	.	2,60,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28331	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:105:G:0:T:7:N:0:O:3	.	4,59,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	28373	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:104:T:3:N:0:O:2	.	3,62,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	28410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:58:G:0:T:3:N:0:O:1	.	3,18,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,50,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28682	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:1:C:0:G:79:T:2:N:0:O:2	.	1,21,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,19,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.016129032258064516	.	A:2:C:94:G:0:T:1:N:0:O:27	.	2,35,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28723	T	C	T	16	ignore low frequency variant	Pass	False	False	True	251	.	20	.	0.0199203187250996	.	A:0:C:5:G:0:T:234:N:0:O:12	.	0,92,5,159	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:1:T:2:N:0:O:0	.	0,25,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:92:G:0:T:3:N:0:O:4	.	0,31,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:114:T:0:N:0:O:0	.	3,12,0,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	28923	C	T	T	12	misc mixed variant	Check	False	True	True	109	.	20	.	0.5871559633027523	.	A:0:C:45:G:0:T:64:N:0:O:0	.	19,32,45,77	203.716	495.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:81:N:0:O:1	.	0,25,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:1:G:0:T:0:N:0:O:0	.	1,2,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.057971014492753624	.	A:4:C:0:G:65:T:0:N:0:O:0	.	4,37,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29070	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.07936507936507936	.	A:116:C:0:G:10:T:0:N:0:O:0	.	4,58,6,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,46,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29199	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:68:G:0:T:2:N:0:O:1	.	1,35,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:116:T:0:N:0:O:0	.	3,55,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29378	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:77:C:2:G:0:T:1:N:0:O:1	.	1,54,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:71:C:0:G:2:T:0:N:0:O:2	.	0,51,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:88:C:0:G:4:T:0:N:0:O:0	.	4,11,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:99:T:0:N:0:O:3	.	3,17,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00155	artic-pipeline	NB08	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00155	artic-pipeline	NB08	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	13	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	58	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,7,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	66	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,5,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	67	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:23:N:0:O:2	.	0,6,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	89	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,5,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	153	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,4,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	171	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,4,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	229	A	T	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:0:T:1:N:0:O:0	.	1,3,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	17	.	20	.	1.0	.	A:0:C:0:G:0:T:17:N:0:O:0	.	2,2,15,15	350.0	1525.2	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	268	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:31:T:0:N:0:O:0	.	0,13,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	278	G	T	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:0:G:23:T:1:N:0:O:0	.	0,7,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:0:G:141:T:3:N:0:O:5	.	0,46,3,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	833	T	C	C	17	accept high frequency variant	Pass	False	True	True	88	.	20	.	0.9431818181818182	.	A:0:C:83:G:0:T:3:N:0:O:2	.	23,25,60,63	264.002	755.0	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	1005	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:2:T:0:N:0:O:2	.	1,23,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:109:T:0:N:0:O:3	.	3,45,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	1.0	.	A:0:C:0:G:0:T:127:N:0:O:0	.	59,59,68,68	350.0	1298.3	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.10843373493975904	.	A:0:C:61:G:0:T:9:N:0:O:13	.	0,43,9,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	1134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	1,29,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:3:G:0:T:74:N:0:O:0	.	0,36,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	2,21,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1287	G	A	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:4:C:0:G:184:T:0:N:0:O:0	.	0,102,4,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:44:C:0:G:1:T:0:N:0:O:9	.	1,30,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	1,13,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1719	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,49,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:71:C:0:G:3:T:0:N:0:O:1	.	1,22,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:108:T:0:N:0:O:17	.	1,50,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.034482758620689655	.	A:5:C:0:G:140:T:0:N:0:O:0	.	5,53,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.16379310344827586	.	A:19:C:0:G:95:T:1:N:0:O:1	.	19,34,0,82	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:101:C:4:G:0:T:0:N:0:O:1	.	0,54,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:115:N:0:O:1	.	0,65,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	126	.	20	.	0.7777777777777778	.	A:0:C:0:G:0:T:98:N:0:O:28	.	48,76,50,50	69.237	1422.6	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:115:C:0:G:4:T:0:N:0:O:1	.	4,54,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:2:G:0:T:0:N:0:O:1	.	0,50,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	0,55,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3362	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:0:T:2:N:0:O:0	.	0,55,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.04878048780487805	.	A:37:C:0:G:0:T:2:N:0:O:2	.	2,16,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:0:C:83:G:0:T:6:N:0:O:1	.	0,68,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3690	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:72:C:2:G:0:T:0:N:0:O:7	.	2,28,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3772	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,75,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	3773	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:91:G:0:T:3:N:0:O:0	.	0,70,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4204	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:44:C:0:G:1:T:0:N:0:O:2	.	1,7,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4208	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:0:T:1:N:0:O:1	.	1,7,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:24:G:0:T:1:N:0:O:4	.	0,21,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.039603960396039604	.	A:0:C:0:G:191:T:8:N:0:O:3	.	0,113,8,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:0:C:0:G:177:T:5:N:0:O:19	.	0,131,5,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.023952095808383235	.	A:4:C:0:G:162:T:0:N:0:O:1	.	0,78,4,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:109:G:0:T:4:N:0:O:3	.	0,44,4,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:127:C:0:G:1:T:4:N:0:O:14	.	0,88,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4667	T	C	T	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:0:C:4:G:0:T:184:N:0:O:0	.	0,107,4,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4668	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:0:C:179:G:0:T:4:N:0:O:3	.	0,106,4,80	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	4729	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:2:G:0:T:60:N:0:O:1	.	0,32,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	4941	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:42:N:0:O:2	.	0,26,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.01951219512195122	.	A:4:C:0:G:0:T:178:N:0:O:23	.	2,85,2,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5258	A	G	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:143:C:0:G:3:T:0:N:0:O:4	.	3,56,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5284	C	T	T	17	accept high frequency variant	Pass	False	True	True	156	.	20	.	0.9871794871794872	.	A:0:C:1:G:0:T:154:N:0:O:1	.	77,78,77,78	420.0	1669.1	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:0:T:73:N:0:O:0	.	2,20,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:114:C:0:G:3:T:0:N:0:O:1	.	3,66,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:67:T:0:N:0:O:1	.	2,33,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5550	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,62,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:82:G:0:T:2:N:0:O:6	.	1,41,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:72:N:0:O:0	.	0,46,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:91:G:0:T:3:N:0:O:4	.	0,50,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.19753086419753085	.	A:0:C:65:G:0:T:16:N:0:O:0	.	0,60,16,21	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:0:N:0:O:1	.	0,49,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	5877	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:0:N:0:O:1	.	2,60,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6071	A	C	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:127:C:3:G:0:T:0:N:0:O:2	.	3,74,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.13095238095238096	.	A:0:C:72:G:0:T:11:N:0:O:1	.	0,69,11,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,55,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:2:G:0:T:92:N:0:O:14	.	2,57,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6171	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:114:G:0:T:4:N:0:O:0	.	0,71,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6387	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	0,62,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6565	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:95:C:0:G:3:T:0:N:0:O:0	.	1,40,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:102:G:0:T:4:N:0:O:0	.	0,64,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:80:G:0:T:2:N:0:O:4	.	1,42,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:1:C:0:G:2:T:97:N:0:O:3	.	0,54,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:114:G:0:T:3:N:0:O:10	.	0,62,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.045714285714285714	.	A:0:C:163:G:0:T:8:N:0:O:4	.	0,109,8,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:70:C:0:G:0:T:2:N:0:O:1	.	0,59,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:93:N:0:O:1	.	0,61,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,39,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7320	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:110:T:0:N:0:O:0	.	3,47,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	79	.	20	.	0.08860759493670886	.	A:7:C:0:G:71:T:0:N:0:O:1	.	7,19,0,60	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:1:C:104:G:0:T:3:N:0:O:3	.	3,51,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7594	C	T	N	2	allele in negative control	Alarm	False	False	False	106	.	20	.	0.018867924528301886	.	A:0:C:88:G:0:T:2:N:0:O:16	.	0,90,2,16	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:4:G:0:T:88:N:0:O:5	.	1,51,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:109:C:0:G:4:T:0:N:0:O:2	.	4,51,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,57,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	1,55,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.14285714285714285	.	A:9:C:0:G:53:T:0:N:0:O:1	.	9,11,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9010	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:98:T:2:N:0:O:2	.	0,45,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:0:T:77:N:0:O:4	.	4,23,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9093	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:3:G:0:T:89:N:0:O:0	.	0,39,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:85:G:0:T:5:N:0:O:0	.	0,55,5,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:81:G:0:T:2:N:0:O:2	.	0,48,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	9336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:0:T:96:N:0:O:1	.	0,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:120:T:3:N:0:O:1	.	0,57,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:99:G:0:T:0:N:0:O:8	.	0,68,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:82:G:0:T:3:N:0:O:9	.	0,66,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:0:T:121:N:0:O:0	.	0,72,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10046	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:123:T:0:N:0:O:11	.	0,81,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10139	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.022727272727272728	.	A:5:C:0:G:215:T:0:N:0:O:0	.	5,109,0,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10203	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	2,54,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:89:T:0:N:0:O:1	.	3,34,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:76:N:0:O:2	.	0,46,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,40,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10631	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,51,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:95:T:3:N:0:O:2	.	3,58,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:0:C:1:G:5:T:97:N:0:O:2	.	0,65,5,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11051	C	A	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:122:G:0:T:0:N:0:O:2	.	3,65,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:1:C:0:G:106:T:5:N:0:O:0	.	5,56,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11301	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:105:N:0:O:22	.	0,83,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11490	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,65,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11732	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	2,37,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11743	G	A	N	2	allele in negative control	Alarm	False	False	False	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:85:T:1:N:0:O:0	.	0,57,2,31	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11748	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,52,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	11868	C	T	N	2	allele in negative control	Alarm	False	False	False	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,55,2,25	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:96:T:2:N:0:O:1	.	0,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12110	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:89:C:0:G:3:T:0:N:0:O:0	.	3,42,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:69:G:0:T:2:N:0:O:33	.	0,93,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:70:T:0:N:0:O:17	.	1,76,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:105:C:0:G:4:T:0:N:0:O:1	.	4,51,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:87:G:0:T:2:N:0:O:9	.	1,49,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:4:C:0:G:181:T:0:N:0:O:0	.	4,72,0,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12467	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,37,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12600	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,38,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,68,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.030927835051546393	.	A:6:C:0:G:188:T:0:N:0:O:0	.	6,63,0,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12853	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:84:G:0:T:3:N:0:O:1	.	3,47,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	1,44,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12893	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	0,73,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:95:T:0:N:0:O:2	.	3,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:102:T:0:N:0:O:9	.	3,45,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:48:T:0:N:0:O:0	.	1,32,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13303	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:0:G:3:T:0:N:0:O:0	.	3,33,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:51:G:0:T:2:N:0:O:2	.	0,50,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:90:T:0:N:0:O:7	.	3,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:59:G:0:T:2:N:0:O:0	.	0,36,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:70:G:0:T:2:N:0:O:0	.	1,32,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:106:G:0:T:0:N:0:O:6	.	4,55,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13644	T	C	T	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.023696682464454975	.	A:0:C:5:G:0:T:205:N:0:O:1	.	0,106,5,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:80:T:0:N:0:O:0	.	3,32,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	13946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	1,31,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	14029	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,54,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	89	.	20	.	0.9662921348314607	.	A:0:C:0:G:0:T:86:N:0:O:3	.	42,45,44,44	334.672	1144.9	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,30,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	14832	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:0:T:86:N:0:O:0	.	1,62,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:4:G:0:T:70:N:0:O:2	.	0,62,4,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:92:T:2:N:0:O:2	.	0,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	15759	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:2:G:0:T:0:N:0:O:1	.	0,64,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.14	.	A:0:C:42:G:0:T:7:N:0:O:1	.	0,28,7,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	16307	T	A	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.09090909090909091	.	A:11:C:0:G:1:T:107:N:0:O:2	.	7,62,4,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	16431	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:108:C:0:G:0:T:3:N:0:O:6	.	0,58,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,33,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:77:T:0:N:0:O:4	.	2,10,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:3:G:0:T:89:N:0:O:0	.	1,49,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:0:C:0:G:8:T:91:N:0:O:1	.	0,50,8,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:1:N:0:O:0	.	2,32,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:86:C:3:G:0:T:0:N:0:O:0	.	3,40,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0228310502283105	.	A:202:C:0:G:5:T:0:N:0:O:12	.	5,83,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:4:C:0:G:168:T:0:N:0:O:12	.	4,40,0,144	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:72:G:0:T:3:N:0:O:4	.	0,47,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	0,44,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	201	.	20	.	0.029850746268656716	.	A:0:C:178:G:0:T:6:N:0:O:17	.	0,95,6,106	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	66	.	20	.	0.10606060606060606	.	A:0:C:58:G:0:T:7:N:0:O:1	.	0,41,7,25	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	83	.	20	.	0.060240963855421686	.	A:74:C:0:G:0:T:5:N:0:O:4	.	0,42,5,41	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:97:T:0:N:0:O:1	.	0,68,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	17944	G	A	N	2	allele in negative control	Alarm	False	False	False	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:1:N:0:O:0	.	2,38,0,51	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	18107	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:114:G:0:T:3:N:0:O:0	.	0,51,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:4:C:0:G:135:T:0:N:0:O:2	.	4,22,0,119	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	18439	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:2:G:0:T:84:N:0:O:21	.	2,55,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	18483	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.09420289855072464	.	A:1:C:124:G:0:T:13:N:0:O:0	.	6,81,7,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:80:C:0:G:3:T:0:N:0:O:0	.	3,36,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,51,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	19044	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:0:T:135:N:0:O:7	.	3,57,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	19065	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:89:N:0:O:2	.	0,71,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.1	.	A:0:C:62:G:0:T:7:N:0:O:1	.	0,49,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.01818181818181818	.	A:3:C:0:G:0:T:127:N:0:O:35	.	0,60,3,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:0:C:3:G:0:T:49:N:0:O:0	.	2,36,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.06896551724137931	.	A:0:C:0:G:4:T:54:N:0:O:0	.	0,36,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,59,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.02717391304347826	.	A:5:C:0:G:176:T:0:N:0:O:3	.	5,57,0,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	20645	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:2:T:0:N:0:O:2	.	2,61,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.05555555555555555	.	A:0:C:0:G:3:T:51:N:0:O:0	.	3,8,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.1206896551724138	.	A:0:C:0:G:41:T:7:N:0:O:10	.	0,40,7,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.1	.	A:0:C:52:G:0:T:6:N:0:O:2	.	0,35,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21216	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:48:G:0:T:1:N:0:O:2	.	0,18,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21217	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:48:N:0:O:1	.	0,24,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21221	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	0,12,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21350	G	T	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:0:C:0:G:56:T:4:N:0:O:2	.	0,35,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:93:G:0:T:2:N:0:O:17	.	0,77,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:92:C:0:G:5:T:0:N:0:O:0	.	5,30,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.047244094488188976	.	A:6:C:0:G:118:T:0:N:0:O:3	.	6,57,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:2:G:0:T:0:N:0:O:0	.	2,60,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	1,70,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:83:G:0:T:2:N:0:O:10	.	1,36,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:86:G:0:T:2:N:0:O:3	.	0,68,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:105:C:0:G:4:T:0:N:0:O:0	.	4,52,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:102:T:0:N:0:O:5	.	3,47,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21796	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:0:G:116:T:3:N:0:O:7	.	3,69,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:112:T:3:N:0:O:0	.	0,63,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21984	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:88:N:0:O:8	.	1,52,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	21985	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:1:C:0:G:84:T:2:N:0:O:0	.	2,56,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22036	A	G	N	2	allele in negative control	Alarm	False	False	False	130	.	20	.	0.03076923076923077	.	A:125:C:0:G:4:T:0:N:0:O:1	.	3,72,1,58	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22066	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:3:T:111:N:0:O:2	.	0,70,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22210	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	1,71,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:89:N:0:O:1	.	2,43,0,49	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22251	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:83:G:0:T:1:N:0:O:3	.	2,59,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22447	T	C	T	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:2:G:0:T:54:N:0:O:0	.	0,37,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:4:G:0:T:114:N:0:O:1	.	0,53,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:76:C:0:G:2:T:0:N:0:O:6	.	1,35,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:91:C:0:G:2:T:0:N:0:O:4	.	2,23,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:90:G:0:T:3:N:0:O:2	.	0,55,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.029585798816568046	.	A:0:C:0:G:164:T:5:N:0:O:0	.	3,84,2,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	125	.	20	.	0.92	.	A:0:C:0:G:115:T:0:N:0:O:10	.	57,67,58,58	279.237	1523.8	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:71:C:0:G:3:T:0:N:0:O:1	.	3,17,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:0:G:2:T:0:N:0:O:0	.	2,44,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.15306122448979592	.	A:0:C:83:G:0:T:15:N:0:O:0	.	0,56,15,42	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,57,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:2:C:0:G:0:T:46:N:0:O:0	.	2,20,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:88:T:0:N:0:O:0	.	5,19,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.07692307692307693	.	A:0:C:60:G:0:T:5:N:0:O:0	.	0,51,5,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24196	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	2,40,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24199	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:80:T:0:N:0:O:0	.	3,29,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:59:G:0:T:2:N:0:O:5	.	0,59,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.09302325581395349	.	A:8:C:0:G:78:T:0:N:0:O:0	.	8,24,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:5:C:0:G:78:T:0:N:0:O:4	.	5,25,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:0:T:87:N:0:O:0	.	3,27,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:67:C:2:G:0:T:0:N:0:O:1	.	2,35,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.07142857142857142	.	A:0:C:52:G:0:T:4:N:0:O:0	.	0,47,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:47:G:0:T:1:N:0:O:0	.	1,42,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,24,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:1:C:0:G:2:T:75:N:0:O:0	.	0,49,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:0:G:0:T:114:N:0:O:0	.	40,40,74,74	210.0	1736.0	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	25592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:47:C:0:G:2:T:0:N:0:O:0	.	1,15,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:3:G:77:T:0:N:0:O:2	.	3,27,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:82:G:0:T:4:N:0:O:6	.	3,58,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.08571428571428572	.	A:61:C:6:G:0:T:0:N:0:O:3	.	1,46,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:81:C:0:G:1:T:2:N:0:O:2	.	0,66,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:90:C:0:G:3:T:0:N:0:O:3	.	3,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:4:C:0:G:82:T:0:N:0:O:0	.	4,45,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	3,46,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	0,55,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:84:T:0:N:0:O:0	.	3,27,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.055900621118012424	.	A:0:C:152:G:0:T:9:N:0:O:0	.	0,130,9,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26607	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:91:G:0:T:1:N:0:O:4	.	2,55,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,70,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,60,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.1125	.	A:9:C:0:G:69:T:0:N:0:O:2	.	9,21,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:3:G:134:T:0:N:0:O:0	.	3,43,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:5:C:0:G:114:T:0:N:0:O:1	.	5,24,0,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.078125	.	A:0:C:118:G:0:T:10:N:0:O:0	.	0,84,10,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:95:G:0:T:0:N:0:O:0	.	3,59,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:110:C:0:G:0:T:4:N:0:O:28	.	3,105,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:85:C:2:G:0:T:0:N:0:O:4	.	2,44,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:82:C:0:G:3:T:0:N:0:O:2	.	3,37,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:112:T:0:N:0:O:5	.	3,64,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:110:G:0:T:3:N:0:O:10	.	0,69,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	27964	C	T	T	17	accept high frequency variant	Pass	False	True	True	130	.	20	.	0.9846153846153847	.	A:0:C:0:G:0:T:128:N:0:O:2	.	65,67,63,63	70.0	1567.4	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	28056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:98:T:0:N:0:O:2	.	2,42,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:3:C:0:G:0:T:71:N:0:O:2	.	0,29,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	28567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,48,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:84:G:0:T:2:N:0:O:2	.	0,51,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,18,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,15,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	28863	C	G	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.011764705882352941	.	A:0:C:47:G:1:T:0:N:0:O:37	.	0,59,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:91:T:0:N:0:O:0	.	4,5,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29021	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:94:N:0:O:6	.	0,85,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29022	C	T	N	18	ambiguous base in consensus	Check	False	False	False	100	.	20	.	0.07	.	A:0:C:88:G:0:T:7:N:0:O:5	.	0,85,7,15	.	199.1	.	.	.	mismatch(n+s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29047	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:59:N:0:O:4	.	0,51,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:82:T:1:N:0:O:1	.	3,31,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:97:T:0:N:0:O:2	.	3,38,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:76:G:0:T:3:N:0:O:8	.	3,26,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:0:G:2:T:0:N:0:O:1	.	2,26,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29195	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:1:G:90:T:3:N:0:O:17	.	1,33,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29196	C	G	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:75:G:2:T:0:N:0:O:1	.	1,34,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:3:G:0:T:74:N:0:O:3	.	0,53,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.07272727272727272	.	A:51:C:0:G:4:T:0:N:0:O:0	.	1,26,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:1:T:0:N:0:O:0	.	1,16,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00156	artic-pipeline	NB09	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	143	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	143	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	143	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00156	artic-pipeline	NB09	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	143	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	79	A	T	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:0:T:1:N:0:O:0	.	0,5,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	123	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,3,1,19	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	17	.	20	.	1.0	.	A:0:C:0:G:0:T:17:N:0:O:0	.	5,5,12,12	419.237	1225.8	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	313	C	T	T	1	near depth threshold	Alarm	False	True	True	19	.	20	.	1.0	.	A:0:C:0:G:0:T:19:N:0:O:0	.	3,3,16,16	69.237	2328.8	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	337	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,5,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	350	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,10,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:109:G:0:T:4:N:0:O:3	.	0,56,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	737	C	T	C	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.047619047619047616	.	A:0:C:147:G:0:T:8:N:0:O:13	.	0,66,8,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	806	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.06666666666666667	.	A:0:C:0:G:110:T:8:N:0:O:2	.	0,32,8,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:85:N:0:O:0	.	0,53,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	955	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.07865168539325842	.	A:0:C:82:G:0:T:7:N:0:O:0	.	0,48,7,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1027	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,63,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1047	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:95:C:0:G:5:T:0:N:0:O:0	.	3,43,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1048	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:5:C:0:G:101:T:0:N:0:O:1	.	3,44,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1067	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,41,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:129:G:0:T:0:N:0:O:4	.	3,73,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:94:C:0:G:0:T:2:N:0:O:12	.	2,74,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.07216494845360824	.	A:0:C:76:G:0:T:7:N:0:O:14	.	0,47,7,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:83:C:0:G:3:T:0:N:0:O:0	.	2,42,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1200	G	C	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:4:G:120:T:0:N:0:O:0	.	1,64,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:72:G:0:T:2:N:0:O:4	.	0,52,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	2,23,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1398	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:122:N:0:O:2	.	0,56,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:96:G:0:T:4:N:0:O:2	.	0,60,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1473	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.09259259259259259	.	A:0:C:97:G:0:T:10:N:0:O:1	.	5,52,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:84:G:0:T:3:N:0:O:3	.	2,26,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.015267175572519083	.	A:2:C:86:G:0:T:0:N:0:O:43	.	1,67,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1742	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:96:T:0:N:0:O:2	.	1,36,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1757	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.11214953271028037	.	A:0:C:0:G:93:T:12:N:0:O:2	.	3,53,9,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:92:N:0:O:5	.	0,44,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	1887	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:106:G:0:T:3:N:0:O:1	.	2,56,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	1911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.02242152466367713	.	A:0:C:210:G:0:T:5:N:0:O:8	.	2,100,3,123	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	2025	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:121:G:0:T:3:N:0:O:0	.	1,43,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.0625	.	A:6:C:0:G:89:T:0:N:0:O:1	.	6,21,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:125:C:5:G:0:T:0:N:0:O:0	.	2,40,3,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	2432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:96:N:0:O:4	.	0,23,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	2445	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05128205128205128	.	A:0:C:111:G:0:T:6:N:0:O:0	.	3,26,3,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	2713	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:103:C:0:G:4:T:0:N:0:O:2	.	3,52,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	2917	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:106:C:0:G:4:T:0:N:0:O:1	.	2,54,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	111	.	20	.	0.7567567567567568	.	A:0:C:0:G:0:T:84:N:0:O:27	.	46,73,38,38	58.823	1340.3	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	3197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:0:G:110:T:0:N:0:O:4	.	4,31,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:100:C:0:G:4:T:0:N:0:O:1	.	4,18,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:118:N:0:O:5	.	0,69,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:0:T:2:N:0:O:0	.	1,24,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3464	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.06766917293233082	.	A:0:C:122:G:0:T:9:N:0:O:2	.	1,48,8,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3511	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	0,27,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.12121212121212122	.	A:0:C:28:G:0:T:4:N:0:O:1	.	0,26,4,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3580	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:0:T:1:N:0:O:1	.	0,24,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3581	A	T	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:0:T:1:N:0:O:0	.	0,21,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3624	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:36:G:0:T:1:N:0:O:1	.	0,22,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3638	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:45:T:0:N:0:O:0	.	1,19,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3665	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	1,19,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3675	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:38:C:0:G:0:T:1:N:0:O:2	.	1,22,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3699	T	G	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:0:G:1:T:30:N:0:O:1	.	1,12,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3700	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:35:N:0:O:3	.	1,16,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	1,5,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3727	T	G	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:0:G:1:T:38:N:0:O:3	.	0,15,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3729	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	0,20,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3730	T	A	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:0:T:45:N:0:O:0	.	0,24,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3739	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.04878048780487805	.	A:0:C:2:G:0:T:38:N:0:O:1	.	0,18,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3753	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:49:T:0:N:0:O:0	.	1,23,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3759	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:0:G:42:T:0:N:0:O:0	.	1,18,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3770	G	T	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:43:T:1:N:0:O:0	.	1,30,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3772	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:36:N:0:O:2	.	0,31,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3773	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:0:T:1:N:0:O:1	.	0,27,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	0,17,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3775	C	A	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:33:G:0:T:0:N:0:O:1	.	0,18,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3777	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,21,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	1,15,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3788	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:1:G:0:T:35:N:0:O:2	.	1,18,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3789	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:2:C:0:G:0:T:47:N:0:O:0	.	2,22,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:43:T:0:N:0:O:0	.	1,17,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:82:T:0:N:0:O:2	.	0,43,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:72:G:0:T:2:N:0:O:0	.	0,61,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,61,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	4108	A	G	A	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.023622047244094488	.	A:248:C:0:G:6:T:0:N:0:O:0	.	4,106,2,148	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	4276	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.13392857142857142	.	A:0:C:97:G:0:T:15:N:0:O:0	.	9,41,6,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	4296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	0,54,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:84:C:0:G:5:T:0:N:0:O:1	.	2,37,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.03125	.	A:1:C:0:G:165:T:6:N:0:O:20	.	0,130,6,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	4456	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:0:C:138:G:0:T:4:N:0:O:1	.	3,62,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	4565	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:100:G:0:T:5:N:0:O:9	.	1,30,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	4743	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.06306306306306306	.	A:0:C:100:G:0:T:7:N:0:O:4	.	5,74,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,73,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	4841	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:88:T:0:N:0:O:8	.	2,42,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5086	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.09230769230769231	.	A:118:C:0:G:12:T:0:N:0:O:0	.	9,83,3,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5138	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:78:T:0:N:0:O:2	.	3,29,1,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:105:C:0:G:3:T:0:N:0:O:1	.	3,71,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,20,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	5393	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:0:T:75:N:0:O:0	.	2,41,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5526	C	T	T	14	new position at high frequency	Pass	False	True	True	101	.	20	.	0.9801980198019802	.	A:0:C:0:G:0:T:99:N:0:O:2	.	56,58,43,43	209.237	1228.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5529	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:1:G:97:T:2:N:0:O:0	.	0,58,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.08	.	A:1:C:66:G:0:T:6:N:0:O:2	.	0,61,6,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	5784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:68:G:0:T:4:N:0:O:3	.	3,17,1,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	5886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:118:G:0:T:4:N:0:O:1	.	2,57,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.12307692307692308	.	A:0:C:56:G:0:T:8:N:0:O:1	.	0,51,8,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:0:C:58:G:0:T:3:N:0:O:0	.	0,33,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:79:T:0:N:0:O:1	.	2,29,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6147	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:73:G:0:T:2:N:0:O:1	.	0,49,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.042682926829268296	.	A:0:C:155:G:0:T:7:N:0:O:2	.	0,90,7,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:1:C:0:G:131:T:3:N:0:O:2	.	0,34,3,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6317	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0392156862745098	.	A:2:C:143:G:0:T:6:N:0:O:2	.	2,86,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.02824858757062147	.	A:171:C:0:G:5:T:0:N:0:O:1	.	5,58,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:59:G:0:T:2:N:0:O:0	.	0,33,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6700	T	C	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:2:G:0:T:53:N:0:O:0	.	0,22,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:63:G:0:T:2:N:0:O:4	.	0,30,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,31,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	2,46,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:112:G:0:T:3:N:0:O:2	.	0,71,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	97	.	20	.	0.08247422680412371	.	A:8:C:0:G:89:T:0:N:0:O:0	.	8,26,0,71	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	7539	C	T	N	2	allele in negative control	Alarm	False	False	False	136	.	20	.	0.029411764705882353	.	A:0:C:130:G:0:T:4:N:0:O:2	.	2,64,2,72	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:1:C:41:G:0:T:2:N:0:O:2	.	1,33,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7713	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,55,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7716	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	1,52,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7730	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:84:N:0:O:4	.	2,61,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7797	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:79:C:0:G:4:T:0:N:0:O:0	.	3,29,1,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	7809	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:2:C:0:G:83:T:7:N:0:O:0	.	4,36,3,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	8016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:103:G:0:T:3:N:0:O:4	.	0,60,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	8140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.06060606060606061	.	A:0:C:145:G:0:T:10:N:0:O:10	.	5,63,5,102	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	8143	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:132:C:0:G:3:T:0:N:0:O:4	.	2,60,1,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.10666666666666667	.	A:8:C:0:G:67:T:0:N:0:O:0	.	8,10,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:5:C:0:G:0:T:89:N:0:O:3	.	5,40,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9226	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.11627906976744186	.	A:0:C:113:G:0:T:15:N:0:O:1	.	5,55,10,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:90:G:0:T:3:N:0:O:1	.	0,56,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:87:G:0:T:5:N:0:O:2	.	0,45,5,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:0:G:124:T:4:N:0:O:1	.	0,59,4,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9399	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:121:G:0:T:4:N:0:O:0	.	1,51,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9509	A	G	A	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.026905829596412557	.	A:217:C:0:G:6:T:0:N:0:O:0	.	3,81,3,142	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	253	.	20	.	0.019762845849802372	.	A:0:C:243:G:0:T:5:N:0:O:5	.	0,102,5,151	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9615	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.04316546762589928	.	A:1:C:131:G:0:T:6:N:0:O:1	.	3,68,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9746	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.06306306306306306	.	A:0:C:102:G:0:T:7:N:0:O:2	.	4,63,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:3:G:0:T:86:N:0:O:0	.	0,51,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9936	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.08	.	A:0:C:68:G:0:T:6:N:0:O:1	.	4,25,2,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9941	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:71:N:0:O:1	.	2,28,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	9951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:44:G:0:T:1:N:0:O:1	.	0,27,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	10031	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:0:C:2:G:0:T:47:N:0:O:1	.	0,32,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10092	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:63:N:0:O:0	.	0,29,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,34,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10340	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.06796116504854369	.	A:0:C:96:G:0:T:7:N:0:O:0	.	3,38,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10350	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.047619047619047616	.	A:0:C:119:G:0:T:6:N:0:O:1	.	1,61,5,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.025	.	A:5:C:0:G:195:T:0:N:0:O:0	.	5,63,0,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10411	T	C	T	16	ignore low frequency variant	Pass	False	False	True	289	.	20	.	0.02422145328719723	.	A:0:C:7:G:0:T:281:N:0:O:1	.	3,151,4,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	1,57,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:0:G:104:T:4:N:0:O:0	.	4,57,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10778	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:0:T:1:N:0:O:0	.	0,13,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10811	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:33:G:0:T:1:N:0:O:6	.	0,16,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10826	G	T	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:0:G:30:T:1:N:0:O:0	.	0,13,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:31:G:0:T:1:N:0:O:1	.	0,16,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10861	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	0,5,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:30:T:0:N:0:O:0	.	1,8,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:36:G:0:T:1:N:0:O:11	.	1,13,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:0:C:0:G:2:T:25:N:0:O:2	.	0,13,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10956	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:32:G:0:T:1:N:0:O:2	.	0,17,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:33:G:0:T:0:N:0:O:2	.	0,17,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	10995	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,9,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11015	T	A	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:0:T:36:N:0:O:1	.	1,15,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11076	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	1,15,0,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11082	T	G	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:0:G:1:T:22:N:0:O:0	.	1,15,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.03676470588235294	.	A:0:C:0:G:130:T:5:N:0:O:1	.	5,67,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11409	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:93:N:0:O:0	.	0,43,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:74:T:0:N:0:O:0	.	2,31,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	11566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,50,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.03255813953488372	.	A:0:C:203:G:0:T:7:N:0:O:5	.	3,119,4,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	117	.	20	.	0.1282051282051282	.	A:0:C:102:G:0:T:15:N:0:O:0	.	0,83,15,34	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11746	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:119:C:0:G:4:T:0:N:0:O:3	.	2,78,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	11979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.17647058823529413	.	A:0:C:98:G:0:T:21:N:0:O:0	.	10,68,11,51	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:101:G:1:T:4:N:0:O:0	.	4,67,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12115	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:106:G:0:T:7:N:0:O:2	.	4,73,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.024390243902439025	.	A:1:C:239:G:0:T:6:N:0:O:0	.	0,138,6,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:72:T:0:N:0:O:28	.	2,66,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12302	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.05511811023622047	.	A:0:C:7:G:0:T:120:N:0:O:0	.	4,59,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12329	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:97:C:0:G:2:T:0:N:0:O:5	.	2,27,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:2:G:0:T:0:N:0:O:0	.	1,44,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:63:C:0:G:2:T:0:N:0:O:0	.	2,34,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12371	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.05303030303030303	.	A:124:C:0:G:0:T:7:N:0:O:1	.	4,67,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:119:C:0:G:3:T:0:N:0:O:5	.	3,55,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:4:C:0:G:100:T:0:N:0:O:6	.	4,40,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:0:T:2:N:0:O:3	.	0,49,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	12467	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:5:C:0:G:110:T:0:N:0:O:1	.	4,38,1,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12536	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:0:G:3:T:122:N:0:O:0	.	0,49,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12537	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:129:C:0:G:3:T:0:N:0:O:1	.	0,54,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12538	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	0,52,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12579	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:131:C:0:G:0:T:4:N:0:O:0	.	3,57,1,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12608	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.08547008547008547	.	A:107:C:0:G:10:T:0:N:0:O:0	.	3,41,7,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12620	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:94:N:0:O:4	.	0,63,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:0:T:2:N:0:O:0	.	0,33,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.16091954022988506	.	A:0:C:72:G:0:T:14:N:0:O:1	.	0,52,14,35	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.056	.	A:0:C:7:G:0:T:118:N:0:O:0	.	2,54,5,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:103:G:0:T:4:N:0:O:2	.	0,30,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:86:G:0:T:4:N:0:O:1	.	0,38,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13043	G	T	G	16	ignore low frequency variant	Pass	False	False	True	291	.	20	.	0.03436426116838488	.	A:0:C:0:G:280:T:10:N:0:O:1	.	3,132,7,159	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:107:G:1:T:3:N:0:O:2	.	0,74,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:95:C:0:G:5:T:0:N:0:O:1	.	5,36,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13443	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.050359712230215826	.	A:0:C:129:G:0:T:7:N:0:O:3	.	4,64,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	1,48,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.08333333333333333	.	A:0:C:55:G:0:T:5:N:0:O:0	.	0,49,5,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:78:T:0:N:0:O:2	.	2,47,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:99:T:0:N:0:O:8	.	4,35,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:64:G:0:T:2:N:0:O:0	.	0,40,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13505	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:0:G:102:T:5:N:0:O:1	.	2,51,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.06542056074766354	.	A:0:C:100:G:0:T:7:N:0:O:0	.	3,50,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	13587	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:0:T:2:N:0:O:1	.	0,48,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13591	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:2:G:0:T:0:N:0:O:0	.	0,43,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:112:G:0:T:0:N:0:O:7	.	2,46,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13616	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:96:C:0:G:2:T:0:N:0:O:3	.	1,38,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:142:T:0:N:0:O:0	.	3,61,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13790	A	C	A	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.08520179372197309	.	A:203:C:19:G:1:T:0:N:0:O:0	.	7,115,12,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.04	.	A:115:C:0:G:5:T:0:N:0:O:5	.	0,63,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14081	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:0:G:125:T:3:N:0:O:0	.	3,72,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,43,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	14183	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.046511627906976744	.	A:0:C:122:G:0:T:6:N:0:O:1	.	3,74,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	14267	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:0:C:195:G:0:T:5:N:0:O:7	.	3,99,2,108	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,46,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	69	.	20	.	0.9710144927536232	.	A:0:C:0:G:0:T:67:N:0:O:2	.	31,33,36,36	418.474	1293.9	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	14599	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:139:G:0:T:3:N:0:O:2	.	1,90,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.05357142857142857	.	A:0:C:106:G:0:T:6:N:0:O:0	.	0,82,6,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:87:T:0:N:0:O:0	.	4,34,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03759398496240601	.	A:128:C:0:G:0:T:5:N:0:O:0	.	3,70,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14912	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	1,10,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:23:G:0:T:0:N:0:O:0	.	1,8,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14926	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,22,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14945	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:28:G:0:T:1:N:0:O:0	.	0,17,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	1,16,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	14949	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,12,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:28:T:0:N:0:O:0	.	1,18,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15026	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	1,16,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15058	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:34:C:0:G:1:T:0:N:0:O:2	.	1,16,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15066	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:37:T:0:N:0:O:1	.	1,19,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15068	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,19,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:25:T:0:N:0:O:0	.	1,10,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15082	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:24:C:0:G:1:T:0:N:0:O:1	.	1,10,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15088	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:27:T:0:N:0:O:0	.	1,15,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15141	C	G	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:38:G:1:T:0:N:0:O:2	.	0,20,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15150	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	1,23,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15177	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:36:C:0:G:1:T:0:N:0:O:2	.	1,21,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15339	G	C	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:0:C:5:G:124:T:0:N:0:O:1	.	4,75,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15360	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.12612612612612611	.	A:0:C:95:G:0:T:14:N:0:O:2	.	10,60,4,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15485	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.04929577464788732	.	A:0:C:133:G:0:T:7:N:0:O:2	.	3,87,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15619	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:114:G:0:T:3:N:0:O:13	.	1,73,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.04225352112676056	.	A:0:C:6:G:0:T:136:N:0:O:0	.	4,92,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.014925373134328358	.	A:1:C:1:G:0:T:40:N:0:O:25	.	1,53,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.16071428571428573	.	A:0:C:45:G:0:T:9:N:0:O:2	.	0,36,9,20	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	16057	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:107:G:0:T:4:N:0:O:2	.	1,38,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16082	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:127:N:0:O:0	.	2,76,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:99:G:0:T:4:N:0:O:2	.	0,68,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	16187	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:44:T:1:N:0:O:0	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16194	T	G	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:0:G:1:T:29:N:0:O:1	.	0,20,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16196	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:42:C:0:G:1:T:0:N:0:O:1	.	1,21,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16198	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	0,22,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16217	C	A	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:33:G:0:T:0:N:0:O:0	.	0,17,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16218	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:0:T:1:N:0:O:0	.	0,24,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16219	C	A	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:29:G:0:T:0:N:0:O:0	.	0,18,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.07142857142857142	.	A:0:C:26:G:0:T:2:N:0:O:0	.	0,21,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:36:G:0:T:1:N:0:O:1	.	0,25,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	16369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:40:T:0:N:0:O:0	.	1,23,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16374	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,25,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16381	G	T	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:0:G:45:T:1:N:0:O:5	.	0,31,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.0990990990990991	.	A:0:C:99:G:0:T:11:N:0:O:1	.	3,65,8,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:90:G:0:T:3:N:0:O:8	.	0,59,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16783	A	G	A	16	ignore low frequency variant	Pass	False	False	True	281	.	20	.	0.06405693950177936	.	A:263:C:0:G:18:T:0:N:0:O:0	.	3,103,15,178	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:0:G:5:T:102:N:0:O:7	.	0,44,5,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.019230769230769232	.	A:3:C:0:G:123:T:0:N:0:O:30	.	0,52,3,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16854	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:96:N:0:O:0	.	0,15,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	16977	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.0364963503649635	.	A:0:C:5:G:0:T:131:N:0:O:1	.	2,43,3,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17069	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.058823529411764705	.	A:0:C:107:G:0:T:7:N:0:O:5	.	3,42,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	226	.	20	.	0.030973451327433628	.	A:205:C:0:G:7:T:0:N:0:O:14	.	7,88,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.026041666666666668	.	A:5:C:0:G:174:T:0:N:0:O:13	.	5,49,0,143	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:3:C:0:G:0:T:63:N:0:O:1	.	3,22,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17211	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:1:C:0:G:124:T:3:N:0:O:1	.	3,85,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:79:C:0:G:4:T:0:N:0:O:0	.	4,47,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17231	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:68:T:0:N:0:O:8	.	2,33,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17304	C	T	T	12	misc mixed variant	Check	False	True	True	110	.	20	.	0.3090909090909091	.	A:0:C:0:G:0:T:34:N:0:O:76	.	13,89,21,21	11.488	1652.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:82:T:1:N:0:O:0	.	3,27,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17459	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	1,58,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:75:G:0:T:2:N:0:O:1	.	0,50,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	17477	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:0:G:2:T:0:N:0:O:2	.	2,55,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:69:G:0:T:2:N:0:O:1	.	0,41,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17634	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:117:G:0:T:3:N:0:O:3	.	0,53,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17738	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.024539877300613498	.	A:0:C:153:G:0:T:4:N:0:O:6	.	0,50,4,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.07692307692307693	.	A:0:C:106:G:0:T:9:N:0:O:2	.	3,75,6,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	67	.	20	.	0.04477611940298507	.	A:0:C:63:G:0:T:3:N:0:O:1	.	0,48,3,19	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	85	.	20	.	0.03529411764705882	.	A:73:C:0:G:0:T:3:N:0:O:9	.	0,48,3,37	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17849	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.06896551724137931	.	A:0:C:1:G:107:T:8:N:0:O:0	.	7,74,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17850	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:119:G:0:T:3:N:0:O:0	.	2,76,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17972	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.06923076923076923	.	A:1:C:0:G:119:T:9:N:0:O:1	.	8,65,1,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	17976	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.05511811023622047	.	A:0:C:119:G:0:T:7:N:0:O:1	.	7,70,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18063	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:0:T:117:N:0:O:8	.	1,70,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18067	G	C	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.04316546762589928	.	A:0:C:6:G:132:T:0:N:0:O:1	.	4,63,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:1:G:3:T:84:N:0:O:0	.	3,38,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18403	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:119:C:0:G:0:T:4:N:0:O:0	.	2,71,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:79:G:0:T:4:N:0:O:9	.	4,22,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18498	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.06206896551724138	.	A:0:C:0:G:136:T:9:N:0:O:0	.	5,81,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18535	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:136:C:0:G:3:T:0:N:0:O:6	.	3,75,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:115:T:3:N:0:O:1	.	2,59,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:67:T:0:N:0:O:1	.	2,26,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18880	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	18981	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.06493506493506493	.	A:0:C:142:G:0:T:10:N:0:O:2	.	4,63,6,91	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	19043	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	2,15,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19044	T	A	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:0:G:0:T:140:N:0:O:4	.	3,70,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:118:G:0:T:3:N:0:O:3	.	0,79,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:3:G:0:T:140:N:0:O:1	.	2,58,1,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:0:T:3:N:0:O:0	.	0,70,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:105:N:0:O:1	.	0,70,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	262	.	20	.	0.030534351145038167	.	A:0:C:8:G:0:T:251:N:0:O:3	.	5,138,3,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	0,35,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:0:G:2:T:40:N:0:O:1	.	0,24,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20011	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:75:T:0:N:0:O:1	.	2,43,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,50,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:91:C:0:G:3:T:0:N:0:O:1	.	3,35,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20069	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:0:C:0:G:123:T:4:N:0:O:3	.	4,65,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.020512820512820513	.	A:4:C:0:G:188:T:0:N:0:O:3	.	4,59,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:115:T:0:N:0:O:0	.	2,48,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20429	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.10909090909090909	.	A:0:C:96:G:0:T:12:N:0:O:2	.	7,51,5,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20591	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	0,10,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	20602	T	A	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:0:T:23:N:0:O:0	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.05737704918032787	.	A:7:C:0:G:114:T:0:N:0:O:1	.	7,39,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21101	G	T	G	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.017142857142857144	.	A:0:C:0:G:122:T:3:N:0:O:50	.	0,76,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:124:G:0:T:4:N:0:O:1	.	0,55,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:81:T:0:N:0:O:0	.	2,35,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:92:G:0:T:3:N:0:O:2	.	0,57,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21433	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:110:T:0:N:0:O:2	.	2,50,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:90:C:0:G:6:T:0:N:0:O:1	.	6,33,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.046153846153846156	.	A:6:C:0:G:121:T:0:N:0:O:3	.	6,63,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21464	A	C	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.058394160583941604	.	A:129:C:8:G:0:T:0:N:0:O:0	.	4,66,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:113:G:0:T:3:N:0:O:1	.	0,45,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21666	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.047244094488188976	.	A:0:C:0:G:121:T:6:N:0:O:0	.	4,62,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:0:C:79:G:0:T:6:N:0:O:5	.	2,29,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21774	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.11864406779661017	.	A:0:C:102:G:0:T:14:N:0:O:2	.	11,80,3,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:135:C:0:G:3:T:0:N:0:O:0	.	3,65,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21794	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:103:C:0:G:3:T:0:N:0:O:5	.	3,38,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:110:N:0:O:1	.	0,66,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21891	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:123:N:0:O:1	.	0,71,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21959	T	A	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.03597122302158273	.	A:5:C:0:G:0:T:134:N:0:O:0	.	3,72,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21984	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:0:G:3:T:98:N:0:O:5	.	2,47,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	21986	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	2,69,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22183	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:121:G:0:T:3:N:0:O:1	.	0,52,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22560	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.07784431137724551	.	A:0:C:150:G:0:T:13:N:0:O:4	.	7,73,6,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.0	.	A:0:C:0:G:148:T:0:N:0:O:2	.	0,59,0,91	2.071	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:0:G:122:T:3:N:0:O:0	.	0,69,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.03289473684210526	.	A:0:C:145:G:0:T:5:N:0:O:2	.	2,64,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:113:G:0:T:3:N:0:O:0	.	0,64,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:134:G:0:T:3:N:0:O:0	.	0,69,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	22736	T	A	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.05303030303030303	.	A:7:C:0:G:0:T:124:N:0:O:1	.	3,55,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.01764705882352941	.	A:0:C:134:G:0:T:3:N:0:O:33	.	0,78,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23221	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:4:G:1:T:103:N:0:O:5	.	3,74,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	128	.	20	.	0.8984375	.	A:1:C:0:G:115:T:0:N:0:O:12	.	64,77,51,51	70.0	1536.4	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:91:T:0:N:0:O:4	.	2,35,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:115:N:0:O:1	.	0,62,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.06	.	A:0:C:94:G:0:T:6:N:0:O:0	.	0,72,6,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:1:T:110:N:0:O:0	.	0,77,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:1:C:86:G:0:T:2:N:0:O:10	.	0,67,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:0:T:3:N:0:O:0	.	3,78,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.05454545454545454	.	A:3:C:0:G:0:T:52:N:0:O:0	.	3,24,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23970	C	G	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:90:G:2:T:0:N:0:O:2	.	2,46,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:90:C:0:G:0:T:3:N:0:O:2	.	3,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	23972	C	G	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:85:G:2:T:0:N:0:O:6	.	2,44,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24050	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.06153846153846154	.	A:0:C:0:G:122:T:8:N:0:O:0	.	3,66,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:3:C:0:G:69:T:0:N:0:O:1	.	3,19,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24064	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.1292517006802721	.	A:0:C:125:G:0:T:19:N:0:O:3	.	10,82,9,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:91:G:0:T:3:N:0:O:0	.	0,64,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24238	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	0,57,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:54:G:0:T:2:N:0:O:0	.	0,40,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.13513513513513514	.	A:0:C:52:G:0:T:10:N:0:O:12	.	3,63,7,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24278	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:1:T:76:N:0:O:0	.	2,9,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:0:T:93:N:0:O:0	.	3,24,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24357	G	C	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.06779661016949153	.	A:0:C:8:G:110:T:0:N:0:O:0	.	5,55,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24374	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.07692307692307693	.	A:0:C:102:G:0:T:9:N:0:O:6	.	4,53,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	24510	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:0:C:0:G:124:T:5:N:0:O:1	.	3,64,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24526	G	T	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.07746478873239436	.	A:0:C:0:G:131:T:11:N:0:O:0	.	7,61,4,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24548	T	C	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:1:C:5:G:0:T:138:N:0:O:0	.	0,70,5,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:0:C:90:G:0:T:4:N:0:O:2	.	0,60,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24724	G	T	G	16	ignore low frequency variant	Pass	False	False	True	265	.	20	.	0.026415094339622643	.	A:0:C:0:G:257:T:7:N:0:O:1	.	1,122,6,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24743	G	T	G	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.036585365853658534	.	A:0:C:0:G:230:T:9:N:0:O:7	.	5,126,4,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:86:T:0:N:0:O:1	.	0,54,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:0:G:3:T:92:N:0:O:0	.	0,61,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	71	.	20	.	0.04225352112676056	.	A:0:C:3:G:0:T:68:N:0:O:0	.	2,28,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	25126	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.1328125	.	A:1:C:0:G:110:T:17:N:0:O:0	.	12,79,5,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25192	A	G	N	12	misc mixed variant	Check	False	False	False	113	.	20	.	0.5575221238938053	.	A:50:C:0:G:63:T:0:N:0:O:0	.	36,70,27,43	.	187.4	.	.	.	mismatch(n+s)	mixed position	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25262	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:83:G:0:T:2:N:0:O:6	.	0,65,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25418	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:76:G:0:T:5:N:0:O:0	.	2,9,3,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25470	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	3,43,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25511	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.06422018348623854	.	A:0:C:95:G:0:T:7:N:0:O:7	.	3,62,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	25693	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:118:G:0:T:3:N:0:O:4	.	1,54,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0189873417721519	.	A:3:C:106:G:0:T:0:N:0:O:49	.	3,69,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:65:C:4:G:0:T:0:N:0:O:2	.	2,42,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25850	G	T	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:1:C:0:G:76:T:2:N:0:O:2	.	1,47,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:1:C:92:G:0:T:3:N:0:O:3	.	1,51,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	26164	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.09523809523809523	.	A:0:C:75:G:0:T:8:N:0:O:1	.	4,27,4,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26243	T	C	T	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.052884615384615384	.	A:0:C:11:G:0:T:193:N:0:O:4	.	8,109,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.019704433497536946	.	A:4:C:0:G:190:T:0:N:0:O:9	.	4,91,0,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,46,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26423	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:86:G:0:T:0:N:0:O:1	.	2,83,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,59,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:0:G:2:T:0:N:0:O:1	.	2,38,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:6:C:0:G:89:T:0:N:0:O:2	.	6,45,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:78:T:0:N:0:O:1	.	3,30,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.03619909502262444	.	A:0:C:213:G:0:T:8:N:0:O:0	.	0,186,8,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26608	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:2:G:0:T:98:N:0:O:2	.	3,34,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.05555555555555555	.	A:118:C:0:G:0:T:7:N:0:O:1	.	7,36,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0784313725490196	.	A:8:C:0:G:93:T:0:N:0:O:1	.	8,15,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:146:G:0:T:3:N:0:O:1	.	0,113,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26844	T	C	T	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.0660377358490566	.	A:0:C:14:G:0:T:190:N:0:O:8	.	10,123,4,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,31,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26990	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:91:C:0:G:3:T:4:N:0:O:3	.	0,45,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	26991	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:79:T:0:N:0:O:0	.	0,59,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	2,23,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,17,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27097	G	T	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:0:G:123:T:3:N:0:O:17	.	0,74,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27103	C	T	N	2	allele in negative control	Alarm	False	False	False	69	.	20	.	0.043478260869565216	.	A:0:C:66:G:0:T:3:N:0:O:0	.	0,59,3,10	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	279	.	20	.	0.021505376344086023	.	A:0:C:6:G:0:T:269:N:0:O:4	.	3,120,3,159	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27267	T	A	T	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.01935483870967742	.	A:3:C:0:G:0:T:144:N:0:O:8	.	1,69,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27274	T	C	T	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.03870967741935484	.	A:0:C:6:G:0:T:145:N:0:O:4	.	3,76,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.018292682926829267	.	A:0:C:145:G:0:T:3:N:0:O:16	.	1,74,2,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27434	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:116:G:0:T:3:N:0:O:0	.	0,54,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	27597	T	G	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:0:G:2:T:65:N:0:O:4	.	1,32,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27661	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:65:G:0:T:4:N:0:O:7	.	1,42,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	27686	C	A	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:46:G:0:T:0:N:0:O:1	.	1,33,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27707	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:46:G:0:T:1:N:0:O:2	.	1,25,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27741	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:72:G:0:T:0:N:0:O:21	.	0,54,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:67:T:0:N:0:O:4	.	2,32,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28185	C	T	C	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.023809523809523808	.	A:0:C:161:G:0:T:4:N:0:O:3	.	2,81,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:4:C:0:G:0:T:76:N:0:O:1	.	2,37,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:69:G:0:T:2:N:0:O:13	.	0,14,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28606	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:110:G:0:T:0:N:0:O:0	.	0,73,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28622	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:111:G:0:T:5:N:0:O:0	.	3,73,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28637	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.07865168539325842	.	A:0:C:82:G:0:T:7:N:0:O:0	.	2,66,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:2:T:0:N:0:O:2	.	2,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:87:G:0:T:2:N:0:O:7	.	0,44,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	125	.	20	.	1.0	.	A:125:C:0:G:0:T:0:N:0:O:0	.	44,44,81,81	336.684	2308.5	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	116	.	20	.	1.0	.	A:116:C:0:G:0:T:0:N:0:O:0	.	36,36,80,80	336.684	2308.5	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	102	.	20	.	0.9411764705882353	.	A:0:C:96:G:2:T:4:N:0:O:0	.	23,25,73,77	336.684	2308.5	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	28889	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:0:G:2:T:71:N:0:O:0	.	2,30,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:0:C:31:G:0:T:2:N:0:O:7	.	0,18,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,19,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	29161	T	A	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:0:T:32:N:0:O:1	.	1,19,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29167	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:28:G:0:T:2:N:0:O:6	.	2,17,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	29170	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,15,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.08	.	A:0:C:20:G:0:T:2:N:0:O:3	.	2,11,0,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29188	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,9,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29195	G	T	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:0:G:22:T:1:N:0:O:8	.	1,12,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29203	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:29:G:0:T:1:N:0:O:0	.	0,15,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29292	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:1:T:0:N:0:O:0	.	1,20,0,3	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.058823529411764705	.	A:2:C:32:G:0:T:0:N:0:O:0	.	2,17,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:32:C:0:G:1:T:0:N:0:O:1	.	1,17,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:67:C:0:G:2:T:0:N:0:O:2	.	0,36,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:0:G:2:T:0:N:0:O:0	.	2,27,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:89:C:0:G:4:T:0:N:0:O:2	.	4,18,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:91:T:0:N:0:O:6	.	4,20,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:125:C:5:G:0:T:0:N:0:O:1	.	0,67,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29523	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.07100591715976332	.	A:0:C:157:G:0:T:12:N:0:O:0	.	7,82,5,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00157	artic-pipeline	NB10	MN908947.3	29541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:0:C:133:G:0:T:5:N:0:O:0	.	1,64,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	514	T	N	N	19	ambiguous base at key position	Pass	.	False	False	9	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	60	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	60	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00157	artic-pipeline	NB10	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	2	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.13157894736842105	.	A:0:C:33:G:0:T:5:N:0:O:0	.	0,7,5,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	143	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:1:G:0:T:0:N:0:O:0	.	0,7,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	147	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:55:G:0:T:2:N:0:O:0	.	0,6,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	59	.	20	.	1.0	.	A:0:C:0:G:0:T:59:N:0:O:0	.	5,5,54,54	350.0	1299.1	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	247	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:45:T:0:N:0:O:2	.	0,6,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.034013605442176874	.	A:1:C:0:G:136:T:5:N:0:O:5	.	0,54,5,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:81:N:0:O:2	.	2,38,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	629	C	T	T	15	new position with no illumina data	Check	False	True	True	108	.	20	.	0.7777777777777778	.	A:0:C:0:G:0:T:84:N:0:O:24	.	33,57,51,51	192.335	1135.4	.	.	.	.	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	0.9923664122137404	.	A:0:C:0:G:0:T:130:N:0:O:1	.	96,97,34,34	70.0	1259.3	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.10144927536231885	.	A:0:C:58:G:0:T:7:N:0:O:4	.	0,48,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:89:T:0:N:0:O:22	.	3,62,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:78:C:0:G:3:T:0:N:0:O:0	.	3,58,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1197	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,80,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:82:G:0:T:2:N:0:O:10	.	1,72,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:106:G:0:T:4:N:0:O:3	.	0,35,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:76:T:0:N:0:O:0	.	0,34,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:84:T:0:N:0:O:0	.	0,35,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:86:G:0:T:2:N:0:O:5	.	0,53,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:54:C:2:G:0:T:0:N:0:O:2	.	0,33,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:3:C:0:G:65:T:0:N:0:O:4	.	3,54,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:63:C:0:G:2:T:0:N:0:O:3	.	2,46,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1780	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	1,41,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:2:T:0:N:0:O:0	.	2,12,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.05555555555555555	.	A:0:C:101:G:0:T:6:N:0:O:1	.	4,53,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:83:G:0:T:2:N:0:O:4	.	0,54,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.11627906976744186	.	A:10:C:0:G:76:T:0:N:0:O:0	.	10,25,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	2493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.016666666666666666	.	A:97:C:0:G:2:T:1:N:0:O:20	.	0,34,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:77:T:0:N:0:O:3	.	0,23,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:3:G:0:T:0:N:0:O:0	.	3,69,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	2730	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,60,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	118	.	20	.	0.7627118644067796	.	A:0:C:0:G:0:T:90:N:0:O:28	.	39,67,51,51	126.449	1378.9	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:0:G:91:T:4:N:0:O:6	.	0,51,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,53,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:58:G:0:T:2:N:0:O:0	.	0,30,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	3417	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:0:T:1:N:0:O:1	.	0,10,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3426	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:139:G:0:T:3:N:0:O:2	.	1,57,2,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.0963855421686747	.	A:0:C:75:G:0:T:8:N:0:O:0	.	0,62,8,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3727	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:89:N:0:O:1	.	1,32,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	0,47,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:97:T:0:N:0:O:4	.	2,28,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:66:G:0:T:2:N:0:O:0	.	0,52,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:77:G:0:T:3:N:0:O:0	.	0,53,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	4222	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:72:C:0:G:2:T:0:N:0:O:0	.	2,31,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	4231	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:105:C:0:G:3:T:0:N:0:O:2	.	3,43,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:72:G:0:T:2:N:0:O:2	.	0,28,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.039301310043668124	.	A:0:C:0:G:214:T:9:N:0:O:6	.	0,146,9,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.018867924528301886	.	A:0:C:0:G:185:T:4:N:0:O:23	.	0,154,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:0:T:2:N:0:O:1	.	2,22,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	3,27,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.10606060606060606	.	A:1:C:57:G:0:T:7:N:0:O:1	.	0,56,7,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:100:T:0:N:0:O:2	.	4,43,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:70:N:0:O:1	.	2,30,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	5824	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:83:N:0:O:1	.	2,39,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,22,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.1125	.	A:0:C:69:G:0:T:9:N:0:O:2	.	0,58,9,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:98:G:0:T:3:N:0:O:0	.	1,57,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:99:G:0:T:3:N:0:O:0	.	0,67,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:81:T:0:N:0:O:6	.	3,28,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	6309	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:81:T:0:N:0:O:6	.	2,27,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	6427	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:0:T:96:N:0:O:7	.	1,39,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	6633	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	0,41,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:98:G:0:T:3:N:0:O:0	.	0,71,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:5:C:0:G:106:T:0:N:0:O:0	.	5,35,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:68:C:0:G:0:T:3:N:0:O:1	.	0,56,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:122:G:0:T:3:N:0:O:6	.	0,81,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:88:N:0:O:1	.	2,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7291	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:80:C:0:G:2:T:0:N:0:O:1	.	2,56,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	80	.	20	.	0.0625	.	A:5:C:0:G:73:T:0:N:0:O:2	.	5,25,0,55	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:119:G:0:T:3:N:0:O:2	.	3,63,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:0:T:95:N:0:O:7	.	0,55,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	7777	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:95:G:0:T:2:N:0:O:4	.	1,41,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7998	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:121:G:0:T:4:N:0:O:1	.	0,79,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	7999	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:0:C:5:G:0:T:113:N:0:O:3	.	1,75,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	8114	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:90:T:0:N:0:O:2	.	2,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:5:G:0:T:99:N:0:O:0	.	0,56,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:5:C:0:G:66:T:0:N:0:O:2	.	5,15,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:0:T:97:N:0:O:9	.	3,59,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:5:C:0:G:116:T:0:N:0:O:0	.	5,62,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	2,39,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:0:G:4:T:122:N:0:O:5	.	0,79,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.08163265306122448	.	A:0:C:90:G:0:T:8:N:0:O:0	.	0,57,8,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,46,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:82:G:0:T:2:N:0:O:10	.	0,65,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	9916	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:0:T:121:N:0:O:7	.	3,69,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:0:G:60:T:0:N:0:O:0	.	2,16,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:0:T:114:N:0:O:0	.	0,64,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:1:C:85:G:0:T:2:N:0:O:1	.	0,41,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.031746031746031744	.	A:6:C:0:G:178:T:0:N:0:O:5	.	6,46,0,143	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:92:G:0:T:2:N:0:O:5	.	0,50,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:120:C:0:G:3:T:0:N:0:O:1	.	3,35,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10609	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:0:G:2:T:73:N:0:O:0	.	2,33,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.03271028037383177	.	A:0:C:7:G:0:T:203:N:0:O:4	.	0,93,7,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	0,53,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:0:T:92:N:0:O:1	.	0,42,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	10995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:93:C:0:G:0:T:2:N:0:O:4	.	0,40,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:96:N:0:O:0	.	2,27,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11186	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,41,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11343	T	C	T	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.024096385542168676	.	A:0:C:4:G:0:T:155:N:0:O:7	.	0,70,4,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11480	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:2:G:0:T:67:N:0:O:0	.	0,55,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:86:C:0:G:0:T:2:N:0:O:2	.	2,53,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11544	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:0:T:75:N:0:O:0	.	2,47,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	1,59,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	68	.	20	.	0.10294117647058823	.	A:0:C:61:G:0:T:7:N:0:O:0	.	0,52,7,16	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:51:C:0:G:2:T:0:N:0:O:0	.	0,33,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	12057	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:96:T:2:N:0:O:0	.	0,39,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:73:G:0:T:2:N:0:O:1	.	1,40,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:59:G:0:T:3:N:0:O:18	.	0,53,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:58:T:0:N:0:O:13	.	0,56,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	2,27,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:95:T:0:N:0:O:3	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12441	T	G	T	16	ignore low frequency variant	Pass	False	False	True	222	.	20	.	0.02252252252252252	.	A:0:C:0:G:5:T:214:N:0:O:3	.	0,103,5,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,55,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:84:G:0:T:4:N:0:O:1	.	0,66,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.025	.	A:5:C:0:G:194:T:0:N:0:O:1	.	5,59,0,141	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:79:G:0:T:2:N:0:O:2	.	0,33,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:0:G:94:T:0:N:0:O:2	.	4,37,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:89:C:0:G:2:T:0:N:0:O:6	.	2,29,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,55,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:121:G:0:T:4:N:0:O:1	.	0,65,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	13164	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,37,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	1,53,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.06557377049180328	.	A:1:C:55:G:1:T:4:N:0:O:0	.	0,55,4,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:70:N:0:O:3	.	0,50,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:3:C:0:G:63:T:0:N:0:O:7	.	3,32,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13494	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,61,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13519	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:0:G:2:T:0:N:0:O:1	.	1,33,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13563	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	1,46,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13571	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:0:G:116:T:3:N:0:O:20	.	1,82,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:5:C:105:G:0:T:0:N:0:O:7	.	4,62,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04878048780487805	.	A:6:C:0:G:102:T:0:N:0:O:15	.	6,61,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.06060606060606061	.	A:93:C:0:G:6:T:0:N:0:O:0	.	6,48,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:107:T:0:N:0:O:4	.	3,41,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:139:G:0:T:3:N:0:O:1	.	0,92,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:136:T:0:N:0:O:1	.	2,67,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	13970	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,42,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:98:T:0:N:0:O:1	.	4,41,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:1:G:91:T:0:N:0:O:2	.	3,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14287	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,61,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	74	.	20	.	1.0	.	A:0:C:0:G:0:T:74:N:0:O:0	.	32,32,42,42	336.433	1111.3	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	14475	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:0:G:0:T:2:N:0:O:0	.	0,61,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14588	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,53,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,33,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	1,38,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14728	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:0:T:3:N:0:O:0	.	1,70,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:93:C:0:G:4:T:0:N:0:O:2	.	4,57,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:104:T:0:N:0:O:1	.	4,59,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:94:C:0:G:0:T:3:N:0:O:1	.	3,54,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	15082	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,53,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	15083	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:98:N:0:O:0	.	2,50,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	15272	A	C	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:106:C:4:G:0:T:0:N:0:O:16	.	0,62,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:28:N:0:O:20	.	0,37,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.17073170731707318	.	A:0:C:34:G:0:T:7:N:0:O:0	.	0,25,7,16	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:97:G:0:T:2:N:0:O:2	.	0,69,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	16329	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:110:G:0:T:3:N:0:O:0	.	2,68,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:6:C:0:G:77:T:1:N:0:O:0	.	6,36,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:107:G:0:T:3:N:0:O:2	.	0,70,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:72:T:0:N:0:O:5	.	3,16,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:69:G:0:T:2:N:0:O:6	.	0,52,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0847457627118644	.	A:0:C:0:G:10:T:100:N:0:O:8	.	0,48,10,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	16859	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	1,34,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:86:G:0:T:3:N:0:O:10	.	0,48,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	16989	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,28,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:2:G:0:T:0:N:0:O:0	.	2,29,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.023474178403755867	.	A:200:C:0:G:5:T:0:N:0:O:8	.	5,65,0,148	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.026455026455026454	.	A:5:C:0:G:179:T:0:N:0:O:5	.	5,40,0,149	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17159	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:115:G:0:T:3:N:0:O:1	.	0,62,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	2,10,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:4:C:0:G:0:T:72:N:0:O:1	.	4,13,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:97:C:0:G:3:T:0:N:0:O:2	.	3,32,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:75:G:0:T:3:N:0:O:2	.	0,53,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:104:T:0:N:0:O:0	.	4,37,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:90:G:0:T:3:N:0:O:0	.	0,50,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	187	.	20	.	0.053475935828877004	.	A:0:C:169:G:0:T:10:N:0:O:8	.	0,96,10,91	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17753	G	T	N	2	allele in negative control	Alarm	False	False	False	125	.	20	.	0.024	.	A:0:C:0:G:121:T:3:N:0:O:1	.	0,48,3,77	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17845	C	T	N	2	allele in negative control	Alarm	False	False	False	64	.	20	.	0.0625	.	A:1:C:59:G:0:T:4:N:0:O:0	.	0,27,4,37	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17846	A	T	N	2	allele in negative control	Alarm	False	False	False	98	.	20	.	0.061224489795918366	.	A:82:C:0:G:1:T:6:N:0:O:9	.	0,27,6,71	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:0:G:88:T:0:N:0:O:0	.	0,43,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	18105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,22,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:80:C:0:G:2:T:0:N:0:O:1	.	2,31,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	18734	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.017241379310344827	.	A:1:C:0:G:48:T:0:N:0:O:9	.	0,43,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:34:C:0:G:0:T:1:N:0:O:1	.	0,20,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:0:G:4:T:90:N:0:O:0	.	3,41,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	0,42,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:0:C:121:G:0:T:5:N:0:O:3	.	0,65,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	19455	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	1,49,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.07017543859649122	.	A:1:C:52:G:0:T:4:N:0:O:0	.	0,39,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,55,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	19944	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:92:G:0:T:2:N:0:O:6	.	0,42,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	19961	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:110:G:0:T:3:N:0:O:1	.	2,42,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.08928571428571429	.	A:0:C:0:G:5:T:50:N:0:O:1	.	0,31,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	20078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:132:G:0:T:3:N:0:O:0	.	0,60,3,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	20291	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:95:T:2:N:0:O:0	.	0,51,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:6:C:0:G:73:T:0:N:0:O:1	.	5,55,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:3:C:135:G:0:T:0:N:0:O:1	.	0,86,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	20769	T	A	T	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.018404907975460124	.	A:3:C:0:G:1:T:142:N:0:O:17	.	1,103,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,31,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	3,46,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:0:C:0:G:2:T:47:N:0:O:0	.	2,5,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.024509803921568627	.	A:0:C:198:G:0:T:5:N:0:O:1	.	0,99,5,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.11428571428571428	.	A:0:C:0:G:81:T:12:N:0:O:12	.	0,65,12,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:1:C:78:G:0:T:2:N:0:O:1	.	0,39,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21212	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:109:T:0:N:0:O:2	.	1,49,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21217	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	0,29,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.01818181818181818	.	A:1:C:0:G:0:T:34:N:0:O:20	.	1,31,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21412	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:116:G:0:T:3:N:0:O:13	.	0,106,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21421	A	G	A	16	ignore low frequency variant	Pass	False	False	True	252	.	20	.	0.015873015873015872	.	A:191:C:0:G:4:T:0:N:0:O:57	.	4,138,0,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:79:C:1:G:0:T:3:N:0:O:2	.	2,28,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:76:C:0:G:3:T:0:N:0:O:0	.	3,24,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:118:T:0:N:0:O:3	.	3,67,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21574	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	1,48,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:0:C:124:G:0:T:4:N:0:O:6	.	1,78,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:70:G:0:T:2:N:0:O:5	.	1,24,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:90:G:0:T:5:N:0:O:6	.	0,83,5,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.06315789473684211	.	A:0:C:6:G:0:T:88:N:0:O:1	.	0,75,6,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,61,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	21794	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:76:C:0:G:3:T:0:N:0:O:0	.	3,27,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22036	A	G	N	2	allele in negative control	Alarm	False	False	False	229	.	20	.	0.03056768558951965	.	A:219:C:0:G:7:T:0:N:0:O:3	.	7,127,0,102	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:4:C:0:G:150:T:0:N:0:O:1	.	2,93,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22132	G	A	N	2	allele in negative control	Alarm	False	False	False	170	.	20	.	0.029411764705882353	.	A:5:C:0:G:163:T:0:N:0:O:2	.	5,103,0,67	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	159	.	20	.	0.031446540880503145	.	A:0:C:0:G:5:T:154:N:0:O:0	.	5,70,0,89	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22341	C	A	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:37:G:0:T:0:N:0:O:0	.	0,15,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22342	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:0:T:39:N:0:O:0	.	0,14,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22354	T	G	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:1:T:32:N:0:O:0	.	1,6,0,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22419	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:0:T:1:N:0:O:0	.	0,11,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:42:N:0:O:1	.	0,11,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:32:C:0:G:1:T:0:N:0:O:1	.	0,9,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:49:T:0:N:0:O:0	.	0,12,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22521	T	A	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:0:T:40:N:0:O:0	.	0,4,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22539	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,9,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22540	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:0:T:46:N:0:O:0	.	0,10,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	22809	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:87:T:0:N:0:O:9	.	1,84,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:3:G:0:T:144:N:0:O:3	.	0,103,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	2,31,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	121	.	20	.	0.9173553719008265	.	A:0:C:0:G:111:T:0:N:0:O:10	.	64,74,47,47	210.0	1539.6	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	23453	C	T	T	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	0.9596774193548387	.	A:0:C:0:G:0:T:119:N:0:O:5	.	84,89,35,35	60.786	1824.0	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:93:T:0:N:0:O:4	.	3,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23596	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:113:N:0:O:1	.	0,73,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,77,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.13793103448275862	.	A:0:C:75:G:0:T:12:N:0:O:0	.	0,49,12,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.0364963503649635	.	A:132:C:0:G:0:T:5:N:0:O:0	.	3,57,2,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.05454545454545454	.	A:3:C:0:G:0:T:52:N:0:O:0	.	3,21,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.061946902654867256	.	A:7:C:0:G:105:T:0:N:0:O:1	.	5,27,2,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24123	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:146:C:0:G:3:T:0:N:0:O:0	.	3,53,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:61:G:0:T:2:N:0:O:1	.	0,47,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.06896551724137931	.	A:0:C:45:G:0:T:4:N:0:O:9	.	0,50,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:3:C:0:G:75:T:0:N:0:O:2	.	3,12,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:3:G:0:T:133:N:0:O:1	.	0,78,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.06451612903225806	.	A:0:C:84:G:0:T:6:N:0:O:3	.	2,73,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.01948051948051948	.	A:3:C:0:G:118:T:0:N:0:O:33	.	3,94,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,57,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	24954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:85:T:0:N:0:O:1	.	1,57,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25060	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:80:C:0:G:2:T:1:N:0:O:2	.	2,42,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	25061	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:81:T:0:N:0:O:0	.	3,38,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25216	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:0:T:2:N:0:O:1	.	0,54,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:130:C:0:G:3:T:0:N:0:O:1	.	3,49,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.07086614173228346	.	A:0:C:0:G:9:T:117:N:0:O:1	.	9,47,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.025	.	A:155:C:0:G:0:T:4:N:0:O:1	.	4,78,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	145	.	20	.	0.9793103448275862	.	A:0:C:0:G:2:T:142:N:0:O:1	.	62,62,80,83	350.0	2485.9	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	25565	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:0:G:143:T:0:N:0:O:0	.	1,70,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:65:C:0:G:2:T:0:N:0:O:0	.	2,28,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:84:G:0:T:2:N:0:O:13	.	1,46,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.017543859649122806	.	A:3:C:115:G:0:T:0:N:0:O:53	.	3,71,0,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.07936507936507936	.	A:58:C:5:G:0:T:0:N:0:O:0	.	0,33,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,48,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:83:C:0:G:0:T:3:N:0:O:2	.	0,52,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:101:C:0:G:3:T:0:N:0:O:1	.	3,30,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	25923	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:2:G:0:T:96:N:0:O:7	.	0,33,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:110:G:0:T:0:N:0:O:9	.	3,71,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:92:N:0:O:2	.	0,50,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26305	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:132:G:0:T:3:N:0:O:5	.	0,70,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,42,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:76:N:0:O:1	.	0,51,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26413	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:0:T:83:N:0:O:2	.	0,49,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,43,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,51,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:96:C:0:G:4:T:0:N:0:O:1	.	4,33,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:100:T:0:N:0:O:3	.	4,33,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,28,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:0:C:188:G:0:T:4:N:0:O:0	.	0,147,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:77:C:0:G:4:T:0:N:0:O:1	.	1,29,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:91:C:0:G:0:T:2:N:0:O:2	.	2,33,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.10126582278481013	.	A:8:C:0:G:70:T:0:N:0:O:1	.	8,20,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:2:G:94:T:0:N:0:O:0	.	2,30,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27006	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:2:G:0:T:0:N:0:O:0	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:1:N:0:O:0	.	2,29,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:5:C:0:G:68:T:0:N:0:O:0	.	5,16,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27103	C	T	N	2	allele in negative control	Alarm	False	False	False	85	.	20	.	0.058823529411764705	.	A:0:C:80:G:0:T:5:N:0:O:0	.	0,59,5,26	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27219	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:125:G:0:T:3:N:0:O:2	.	0,51,3,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:0:C:8:G:0:T:91:N:0:O:1	.	0,43,8,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.06716417910447761	.	A:0:C:111:G:0:T:9:N:0:O:14	.	0,55,9,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:0:C:96:G:0:T:2:N:0:O:16	.	0,67,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27626	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,71,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:102:G:0:T:0:N:0:O:0	.	4,61,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:104:C:0:G:0:T:3:N:0:O:28	.	3,101,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28291	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,55,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	28380	G	T	G	12	misc mixed variant	Check	False	False	True	122	.	20	.	0.3770491803278688	.	A:0:C:0:G:74:T:46:N:0:O:2	.	24,67,22,55	.	.	.	.	.	mismatch(s)	mixed position	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	28410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:66:G:0:T:2:N:0:O:2	.	1,38,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,45,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:4:C:101:G:0:T:1:N:0:O:30	.	1,46,3,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28723	T	C	T	16	ignore low frequency variant	Pass	False	False	True	242	.	20	.	0.024793388429752067	.	A:0:C:6:G:0:T:220:N:0:O:16	.	0,104,6,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:84:G:0:T:4:N:0:O:10	.	0,51,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:92:T:0:N:0:O:0	.	4,13,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:79:G:0:T:3:N:0:O:0	.	0,38,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:98:G:0:T:2:N:0:O:9	.	0,42,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:0:C:49:G:0:T:1:N:0:O:6	.	0,29,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29056	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,5,0,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:63:T:0:N:0:O:1	.	2,4,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:85:G:0:T:0:N:0:O:5	.	2,40,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:74:C:0:G:2:T:0:N:0:O:1	.	1,47,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:72:C:0:G:3:T:0:N:0:O:0	.	3,34,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.07954545454545454	.	A:76:C:0:G:7:T:0:N:0:O:5	.	7,24,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:77:T:0:N:0:O:9	.	5,22,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:120:C:0:G:4:T:0:N:0:O:0	.	4,57,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29777	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:65:T:0:N:0:O:0	.	2,30,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	29781	G	T	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:0:G:63:T:2:N:0:O:1	.	2,17,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00158	artic-pipeline	NB11	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	298	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00158	artic-pipeline	NB11	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	107	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,8,0,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	110	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:0:T:1:N:0:O:0	.	1,4,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:0:T:1:N:0:O:0	.	0,6,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:0:C:2:G:0:T:26:N:0:O:1	.	0,7,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	0,7,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	171	C	A	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:33:G:0:T:0:N:0:O:0	.	0,6,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	178	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:21:C:0:G:1:T:0:N:0:O:1	.	0,5,1,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	189	G	T	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.05405405405405406	.	A:0:C:0:G:35:T:2:N:0:O:0	.	0,3,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	207	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	0,3,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	39	.	20	.	0.9230769230769231	.	A:0:C:0:G:0:T:36:N:0:O:3	.	8,11,28,28	70.0	1451.3	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	251	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:31:N:0:O:1	.	0,9,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	283	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:34:N:0:O:1	.	0,8,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	284	G	T	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:0:G:39:T:1:N:0:O:2	.	0,9,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	285	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:41:T:1:N:0:O:3	.	0,13,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:33:G:0:T:1:N:0:O:0	.	0,5,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	342	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:32:N:0:O:1	.	0,9,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	359	G	T	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:0:G:49:T:1:N:0:O:2	.	0,14,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	397	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	1,8,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:29:G:0:T:1:N:0:O:0	.	0,15,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	454	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,5,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:0:G:1:T:0:N:0:O:0	.	0,14,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:29:G:0:T:1:N:0:O:0	.	0,13,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	1,12,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	648	A	T	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:0:T:1:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	652	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:24:C:0:G:1:T:0:N:0:O:1	.	1,13,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	655	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:1:T:0:N:0:O:0	.	1,10,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	664	C	G	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:31:G:1:T:0:N:0:O:0	.	1,17,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0379746835443038	.	A:0:C:152:G:0:T:6:N:0:O:0	.	3,75,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	751	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:0:C:138:G:0:T:4:N:0:O:2	.	2,61,2,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	789	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:0:C:0:G:112:T:6:N:0:O:1	.	3,60,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	952	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:95:G:0:T:0:N:0:O:0	.	0,56,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	.	20	.	1.0	.	A:0:C:0:G:0:T:138:N:0:O:0	.	72,72,66,66	350.0	1401.0	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	1067	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:97:T:2:N:0:O:0	.	0,35,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.07954545454545454	.	A:0:C:76:G:0:T:7:N:0:O:5	.	1,44,6,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	1116	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:127:N:0:O:0	.	3,67,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:5:C:0:G:100:T:0:N:0:O:27	.	2,50,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:83:C:0:G:4:T:0:N:0:O:0	.	2,42,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:87:N:0:O:4	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1238	C	A	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.050724637681159424	.	A:7:C:130:G:0:T:0:N:0:O:1	.	4,73,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1242	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:0:G:126:T:3:N:0:O:0	.	2,65,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:0:T:3:N:0:O:0	.	3,33,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:3:T:0:N:0:O:1	.	3,34,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,60,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:82:N:0:O:1	.	0,59,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:94:G:0:T:0:N:0:O:34	.	0,69,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.01818181818181818	.	A:47:C:0:G:1:T:0:N:0:O:7	.	1,24,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	1642	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:0:C:134:G:0:T:4:N:0:O:2	.	2,64,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2118	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.04580152671755725	.	A:6:C:0:G:121:T:0:N:0:O:4	.	4,59,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2192	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:98:C:0:G:2:T:0:N:0:O:2	.	0,56,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.08163265306122448	.	A:8:C:0:G:88:T:0:N:0:O:2	.	8,31,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	2235	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:1:C:0:G:130:T:3:N:0:O:1	.	2,53,1,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2379	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:0:C:4:G:0:T:131:N:0:O:4	.	1,41,3,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.05	.	A:7:C:0:G:127:T:0:N:0:O:6	.	2,35,5,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2491	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:92:C:0:G:0:T:5:N:0:O:9	.	4,37,1,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:90:N:0:O:1	.	0,50,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2670	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:79:N:0:O:2	.	0,36,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:79:C:0:G:2:T:0:N:0:O:4	.	2,38,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2859	G	T	G	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.02857142857142857	.	A:0:C:0:G:204:T:6:N:0:O:0	.	3,102,3,108	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2862	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.041237113402061855	.	A:0:C:171:G:0:T:8:N:0:O:15	.	2,91,6,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	2933	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:94:G:0:T:4:N:0:O:3	.	3,42,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	3030	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:0:G:121:T:3:N:0:O:4	.	2,65,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	120	.	20	.	0.8166666666666667	.	A:0:C:0:G:0:T:98:N:0:O:22	.	46,68,52,52	66.227	1402.9	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	3099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:127:G:0:T:5:N:0:O:0	.	3,66,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3138	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:129:C:0:G:0:T:4:N:0:O:0	.	1,64,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3190	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:133:C:0:G:3:T:0:N:0:O:1	.	3,55,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	2,11,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3244	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:131:G:0:T:3:N:0:O:0	.	1,53,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:4:C:0:G:0:T:121:N:0:O:3	.	0,62,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3354	G	T	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0457516339869281	.	A:0:C:0:G:146:T:7:N:0:O:0	.	1,69,6,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.05172413793103448	.	A:109:C:0:G:6:T:0:N:0:O:1	.	5,68,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.05357142857142857	.	A:48:C:0:G:0:T:3:N:0:O:5	.	2,33,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0851063829787234	.	A:0:C:85:G:0:T:8:N:0:O:1	.	0,65,8,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3556	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:4:C:0:G:0:T:113:N:0:O:9	.	3,59,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:118:T:0:N:0:O:3	.	3,48,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3754	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:115:C:0:G:3:T:0:N:0:O:1	.	3,41,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:0:G:3:T:72:N:0:O:17	.	1,41,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.0967741935483871	.	A:6:C:0:G:56:T:0:N:0:O:0	.	1,35,5,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:0:T:95:N:0:O:13	.	2,56,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:68:G:0:T:2:N:0:O:0	.	0,50,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,50,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3967	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:0:T:88:N:0:O:1	.	2,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	3987	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	1,50,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	4015	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:84:C:0:G:0:T:3:N:0:O:0	.	3,31,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:83:G:0:T:2:N:0:O:3	.	0,56,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4160	G	A	G	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.029239766081871343	.	A:5:C:0:G:166:T:0:N:0:O:0	.	3,54,2,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.11578947368421053	.	A:0:C:22:G:0:T:168:N:0:O:0	.	8,66,14,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4290	C	A	C	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.03278688524590164	.	A:6:C:164:G:0:T:0:N:0:O:13	.	2,73,4,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	257	.	20	.	0.027237354085603113	.	A:0:C:0:G:244:T:7:N:0:O:6	.	0,144,7,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:0:C:149:G:0:T:4:N:0:O:2	.	0,64,4,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4399	G	C	G	16	ignore low frequency variant	Pass	False	False	True	270	.	20	.	0.022222222222222223	.	A:0:C:6:G:257:T:0:N:0:O:7	.	2,76,4,194	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:92:C:0:G:1:T:2:N:0:O:9	.	0,68,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4614	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:93:N:0:O:1	.	1,38,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4622	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.05384615384615385	.	A:0:C:0:G:121:T:7:N:0:O:2	.	3,66,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4631	G	C	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:1:C:3:G:111:T:0:N:0:O:1	.	1,49,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4633	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	0,39,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	4638	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04065040650406504	.	A:118:C:0:G:0:T:5:N:0:O:0	.	2,58,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4718	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.04477611940298507	.	A:0:C:0:G:128:T:6:N:0:O:0	.	2,80,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4719	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:1:C:127:G:0:T:3:N:0:O:0	.	2,78,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:0:G:3:T:131:N:0:O:8	.	0,80,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	4927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:118:G:0:T:3:N:0:O:2	.	0,79,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5028	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	2,55,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5138	G	A	G	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:2:C:0:G:60:T:0:N:0:O:0	.	2,16,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	2,32,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:0:G:84:T:4:N:0:O:1	.	4,44,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5187	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:3:C:0:G:136:T:0:N:0:O:12	.	3,101,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:2:G:0:T:0:N:0:O:0	.	1,57,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5558	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0546875	.	A:0:C:0:G:120:T:7:N:0:O:1	.	3,75,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,56,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:121:T:3:N:0:O:0	.	3,63,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.1111111111111111	.	A:0:C:63:G:0:T:8:N:0:O:1	.	0,60,8,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5748	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:117:G:0:T:3:N:0:O:3	.	3,64,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:75:G:0:T:2:N:0:O:9	.	0,24,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:2:G:0:T:60:N:0:O:1	.	0,40,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5845	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:96:C:0:G:3:T:0:N:0:O:1	.	1,44,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:91:N:0:O:1	.	2,45,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	5853	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:0:T:101:N:0:O:1	.	3,46,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.1511627906976744	.	A:0:C:73:G:0:T:13:N:0:O:0	.	0,66,13,20	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6087	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:5:C:0:G:0:T:133:N:0:O:6	.	2,72,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:111:T:0:N:0:O:1	.	3,52,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.06	.	A:0:C:94:G:0:T:6:N:0:O:0	.	4,62,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	6178	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:0:C:4:G:0:T:136:N:0:O:0	.	1,76,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	6190	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:0:C:100:G:0:T:6:N:0:O:0	.	4,44,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6196	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:0:T:2:N:0:O:3	.	2,62,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:92:G:0:T:3:N:0:O:2	.	0,59,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:0:C:0:G:78:T:5:N:0:O:2	.	0,17,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6397	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:0:T:3:N:0:O:0	.	0,43,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:4:G:0:T:100:N:0:O:1	.	0,50,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:109:G:0:T:3:N:0:O:0	.	0,62,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:91:G:0:T:3:N:0:O:14	.	3,41,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:3:T:96:N:0:O:3	.	1,48,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:91:T:0:N:0:O:3	.	2,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.02824858757062147	.	A:0:C:166:G:0:T:5:N:0:O:6	.	0,115,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6807	C	T	C	16	ignore low frequency variant	Pass	False	False	True	249	.	20	.	0.028112449799196786	.	A:0:C:208:G:0:T:7:N:0:O:34	.	2,116,5,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:186:C:0:G:4:T:0:N:0:O:2	.	1,102,3,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:91:T:0:N:0:O:0	.	5,42,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7006	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:104:G:0:T:5:N:0:O:1	.	0,69,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:0:T:2:N:0:O:1	.	0,73,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7155	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:26:G:0:T:1:N:0:O:1	.	0,18,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7156	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,17,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7162	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.08823529411764706	.	A:0:C:31:G:0:T:3:N:0:O:0	.	2,21,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,19,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	7166	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,19,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,20,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:30:G:0:T:1:N:0:O:0	.	0,19,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7212	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	1,15,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:25:C:0:G:2:T:0:N:0:O:2	.	2,14,0,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7229	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	1,8,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:35:N:0:O:1	.	0,19,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7288	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.06060606060606061	.	A:1:C:2:G:0:T:28:N:0:O:2	.	2,17,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7376	C	T	C	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.04093567251461988	.	A:0:C:162:G:0:T:7:N:0:O:2	.	4,90,3,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7472	G	A	N	2	allele in negative control	Alarm	False	False	False	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:86:T:1:N:0:O:0	.	4,29,0,62	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	7516	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:100:C:0:G:3:T:0:N:0:O:1	.	1,38,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7651	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.05426356589147287	.	A:0:C:7:G:0:T:121:N:0:O:1	.	4,64,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7670	G	T	G	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.06315789473684211	.	A:0:C:0:G:175:T:12:N:0:O:3	.	5,125,7,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7715	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.06451612903225806	.	A:116:C:0:G:8:T:0:N:0:O:0	.	4,56,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7777	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:0:C:91:G:0:T:6:N:0:O:9	.	3,47,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:4:G:0:T:97:N:0:O:4	.	0,62,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	7884	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	3,55,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8029	T	A	T	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.03409090909090909	.	A:6:C:0:G:0:T:142:N:0:O:28	.	3,74,3,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:110:C:3:G:0:T:0:N:0:O:2	.	0,56,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8320	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:47:G:0:T:1:N:0:O:0	.	0,25,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:1:T:0:N:0:O:0	.	1,9,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	1,13,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:0:T:1:N:0:O:0	.	1,21,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8485	T	A	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:0:T:42:N:0:O:4	.	1,34,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8540	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:46:T:0:N:0:O:1	.	1,24,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:32:N:0:O:1	.	1,27,0,7	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8637	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:89:G:0:T:5:N:0:O:0	.	4,50,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8668	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:86:G:0:T:2:N:0:O:8	.	0,55,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8669	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	0,48,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:0:C:70:G:0:T:3:N:0:O:0	.	0,50,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8699	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:76:C:0:G:2:T:0:N:0:O:2	.	0,49,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8880	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:64:G:0:T:2:N:0:O:0	.	0,36,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.08695652173913043	.	A:4:C:0:G:41:T:1:N:0:O:0	.	4,6,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	8890	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:0:C:48:G:0:T:2:N:0:O:0	.	1,12,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.05084745762711865	.	A:3:C:0:G:0:T:55:N:0:O:1	.	3,35,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9056	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.050359712230215826	.	A:0:C:132:G:0:T:7:N:0:O:0	.	7,73,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9090	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:0:C:140:G:0:T:4:N:0:O:2	.	2,76,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9106	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:94:N:0:O:0	.	0,54,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:97:G:0:T:4:N:0:O:1	.	0,61,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.09473684210526316	.	A:0:C:85:G:0:T:9:N:0:O:1	.	4,51,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	9349	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,44,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9380	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:5:C:0:G:123:T:0:N:0:O:3	.	1,56,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:0:G:122:T:4:N:0:O:1	.	0,58,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9452	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.044444444444444446	.	A:0:C:6:G:0:T:129:N:0:O:0	.	2,56,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9502	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:0:C:104:G:0:T:5:N:0:O:4	.	4,55,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:0:C:127:G:0:T:5:N:0:O:6	.	4,106,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9693	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.05263157894736842	.	A:0:C:105:G:0:T:6:N:0:O:3	.	4,80,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	9750	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:136:C:0:G:0:T:4:N:0:O:0	.	2,92,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9755	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:137:G:0:T:3:N:0:O:6	.	1,96,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9807	G	T	G	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0427807486631016	.	A:0:C:0:G:178:T:8:N:0:O:1	.	7,117,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9885	A	G	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:55:C:0:G:2:T:0:N:0:O:0	.	2,19,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9887	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	1,9,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9891	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:0:C:62:G:0:T:2:N:0:O:0	.	2,30,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:56:T:0:N:0:O:1	.	2,20,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9920	G	T	G	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:0:G:55:T:2:N:0:O:0	.	2,24,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9971	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	0,18,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	9972	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:40:C:1:G:1:T:0:N:0:O:2	.	0,18,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10018	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:65:C:0:G:2:T:0:N:0:O:1	.	1,28,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10070	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:0:T:1:N:0:O:1	.	0,30,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:47:C:0:G:1:T:0:N:0:O:2	.	1,28,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0379746835443038	.	A:0:C:145:G:0:T:6:N:0:O:7	.	3,52,3,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10186	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.056	.	A:0:C:118:G:0:T:7:N:0:O:0	.	6,65,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.043478260869565216	.	A:0:C:132:G:0:T:6:N:0:O:0	.	2,78,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10347	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:135:G:0:T:3:N:0:O:0	.	2,76,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10375	A	T	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:135:C:0:G:3:T:3:N:0:O:4	.	0,73,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.03017241379310345	.	A:7:C:0:G:223:T:0:N:0:O:2	.	7,93,0,139	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:95:G:0:T:3:N:0:O:1	.	0,62,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	10458	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.08333333333333333	.	A:0:C:110:G:0:T:10:N:0:O:0	.	2,66,8,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10464	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:103:C:0:G:5:T:0:N:0:O:4	.	5,56,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10476	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,60,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:127:G:0:T:4:N:0:O:0	.	1,75,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10810	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:2:G:0:T:60:N:0:O:1	.	0,34,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.06896551724137931	.	A:0:C:52:G:0:T:4:N:0:O:2	.	0,34,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10836	T	C	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:3:G:0:T:62:N:0:O:1	.	0,27,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:0:G:2:T:59:N:0:O:2	.	0,24,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	10995	A	G	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.05263157894736842	.	A:50:C:0:G:3:T:1:N:0:O:3	.	3,20,0,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11021	A	T	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:55:C:0:G:0:T:3:N:0:O:0	.	2,25,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11051	C	A	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:139:G:0:T:0:N:0:O:5	.	3,81,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11081	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.09523809523809523	.	A:0:C:0:G:2:T:19:N:0:O:0	.	1,15,1,6	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11386	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:102:C:0:G:3:T:0:N:0:O:10	.	3,58,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11446	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:117:C:0:G:3:T:1:N:0:O:1	.	0,77,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11669	C	T	N	2	allele in negative control	Alarm	False	False	False	106	.	20	.	0.08490566037735849	.	A:0:C:93:G:0:T:9:N:0:O:4	.	0,84,9,22	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11685	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:133:G:0:T:3:N:0:O:1	.	2,95,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11749	A	T	N	2	allele in negative control	Alarm	False	False	False	111	.	20	.	0.036036036036036036	.	A:107:C:0:G:0:T:4:N:0:O:0	.	4,69,0,42	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11885	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:5:G:0:T:95:N:0:O:10	.	4,91,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11950	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.05223880597014925	.	A:0:C:127:G:0:T:7:N:0:O:0	.	2,57,5,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11954	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:0:C:0:G:124:T:4:N:0:O:0	.	0,50,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11959	T	G	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.046153846153846156	.	A:0:C:0:G:6:T:123:N:0:O:1	.	3,59,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:57:C:0:G:2:T:0:N:0:O:0	.	0,42,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	12033	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:0:G:123:T:3:N:0:O:1	.	2,50,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,53,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12183	C	T	C	16	ignore low frequency variant	Pass	False	False	True	238	.	20	.	0.03361344537815126	.	A:0:C:223:G:0:T:8:N:0:O:7	.	1,123,7,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:67:C:0:G:5:T:0:N:0:O:1	.	3,37,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12369	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,53,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:76:G:0:T:2:N:0:O:4	.	0,38,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	12550	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:0:C:0:G:110:T:5:N:0:O:0	.	1,58,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12641	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:116:G:0:T:3:N:0:O:7	.	1,77,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:107:G:0:T:5:N:0:O:2	.	2,79,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:86:G:0:T:2:N:0:O:2	.	0,68,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12727	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:115:N:0:O:2	.	2,69,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12872	G	T	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0547945205479452	.	A:0:C:0:G:138:T:8:N:0:O:0	.	3,47,5,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	12952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.051094890510948905	.	A:0:C:118:G:0:T:7:N:0:O:12	.	2,40,5,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13034	G	C	G	16	ignore low frequency variant	Pass	False	False	True	327	.	20	.	0.14067278287461774	.	A:0:C:46:G:268:T:6:N:0:O:7	.	12,151,34,176	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13154	A	T	A	16	ignore low frequency variant	Pass	False	False	True	232	.	20	.	0.24568965517241378	.	A:172:C:0:G:0:T:57:N:0:O:3	.	35,142,22,90	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.019230769230769232	.	A:0:C:3:G:0:T:143:N:0:O:10	.	0,80,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.02072538860103627	.	A:161:C:0:G:4:T:0:N:0:O:28	.	4,96,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13303	A	G	A	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.037037037037037035	.	A:152:C:0:G:6:T:0:N:0:O:4	.	6,84,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:0:G:3:T:0:N:0:O:1	.	3,51,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13397	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:1:C:0:G:106:T:4:N:0:O:2	.	1,53,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13425	G	T	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.07042253521126761	.	A:0:C:0:G:66:T:5:N:0:O:0	.	2,37,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:83:N:0:O:1	.	0,57,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.06593406593406594	.	A:6:C:0:G:79:T:0:N:0:O:6	.	6,31,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:0:T:3:N:0:O:1	.	1,53,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13511	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:110:G:0:T:3:N:0:O:1	.	2,55,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13518	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:1:G:0:T:88:N:0:O:4	.	2,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13587	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:0:T:2:N:0:O:1	.	1,55,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13616	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:98:C:0:G:3:T:0:N:0:O:4	.	2,49,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13667	C	T	C	16	ignore low frequency variant	Pass	False	False	True	302	.	20	.	0.033112582781456956	.	A:0:C:283:G:0:T:10:N:0:O:9	.	6,129,4,173	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13671	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:140:G:0:T:3:N:0:O:5	.	0,101,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.03954802259887006	.	A:7:C:0:G:167:T:0:N:0:O:3	.	7,46,0,131	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13759	G	T	G	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.037383177570093455	.	A:0:C:0:G:205:T:8:N:0:O:1	.	3,96,5,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	13862	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.11734693877551021	.	A:0:C:172:G:0:T:23:N:0:O:1	.	10,90,13,106	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	14011	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.058823529411764705	.	A:0:C:112:G:0:T:7:N:0:O:0	.	4,68,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:110:G:0:T:3:N:0:O:3	.	0,83,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	91	.	20	.	1.0	.	A:0:C:0:G:0:T:91:N:0:O:0	.	39,39,52,52	408.445	1205.2	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	14528	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:117:T:0:N:0:O:1	.	3,56,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:0:G:86:T:0:N:0:O:2	.	4,28,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:0:G:93:T:0:N:0:O:1	.	4,38,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:84:C:0:G:2:T:1:N:0:O:3	.	2,52,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14758	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:0:T:99:N:0:O:3	.	0,65,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:82:N:0:O:2	.	0,41,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:75:C:0:G:4:T:0:N:0:O:3	.	4,32,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,31,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14970	T	G	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:1:C:0:G:3:T:104:N:0:O:23	.	3,80,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:80:C:0:G:0:T:3:N:0:O:1	.	3,38,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	14977	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,44,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	15076	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:91:N:0:O:0	.	0,58,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	15419	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.037037037037037035	.	A:0:C:128:G:0:T:5:N:0:O:2	.	2,72,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	15648	T	C	T	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:0:C:4:G:0:T:154:N:0:O:0	.	3,90,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	15904	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.044444444444444446	.	A:0:C:122:G:0:T:6:N:0:O:7	.	3,69,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	15952	C	T	C	8	variant ignored due to strand bias	Pass	False	False	True	51	.	20	.	0.3137254901960784	.	A:0:C:35:G:0:T:16:N:0:O:0	.	0,22,16,29	.	.	.	.	.	mismatch(s)	mixed position	.	strand bias: low +AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	15958	G	C	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:97:T:0:N:0:O:0	.	0,64,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	15995	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.0625	.	A:0:C:0:G:105:T:7:N:0:O:0	.	4,45,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16020	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.046875	.	A:0:C:0:G:121:T:6:N:0:O:1	.	2,71,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16025	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:0:C:4:G:0:T:128:N:0:O:1	.	2,70,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:90:G:0:T:3:N:0:O:1	.	0,62,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	16112	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0390625	.	A:0:C:5:G:0:T:121:N:0:O:2	.	4,65,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.048	.	A:0:C:118:G:0:T:6:N:0:O:1	.	2,62,4,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:76:G:0:T:4:N:0:O:1	.	0,61,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16280	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.03731343283582089	.	A:0:C:0:G:129:T:5:N:0:O:0	.	5,72,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16336	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.06870229007633588	.	A:1:C:0:G:120:T:9:N:0:O:1	.	4,69,5,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:0:C:6:G:0:T:83:N:0:O:3	.	3,52,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,48,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16715	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:0:T:3:N:0:O:0	.	1,48,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:97:T:0:N:0:O:4	.	4,19,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.09565217391304348	.	A:0:C:11:G:0:T:104:N:0:O:0	.	3,53,8,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:102:C:1:G:3:T:0:N:0:O:3	.	3,28,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	0,41,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.07339449541284404	.	A:0:C:0:G:8:T:96:N:0:O:5	.	0,44,8,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:3:G:0:T:0:N:0:O:0	.	3,24,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.020512820512820513	.	A:4:C:0:G:182:T:0:N:0:O:9	.	4,41,0,154	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17141	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:123:G:0:T:3:N:0:O:1	.	2,69,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:77:C:0:G:2:T:0:N:0:O:1	.	2,14,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:0:T:79:N:0:O:2	.	3,18,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:95:C:0:G:3:T:0:N:0:O:0	.	3,40,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:119:T:1:N:0:O:0	.	3,39,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.057692307692307696	.	A:0:C:97:G:0:T:6:N:0:O:1	.	0,61,6,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	17523	G	A	G	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.05917159763313609	.	A:10:C:0:G:139:T:0:N:0:O:20	.	8,53,2,116	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17593	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:144:C:0:G:0:T:3:N:0:O:0	.	0,48,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17715	A	C	A	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.029940119760479042	.	A:159:C:5:G:0:T:0:N:0:O:3	.	1,76,4,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:93:G:0:T:3:N:0:O:3	.	1,53,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	17734	C	T	N	2	allele in negative control	Alarm	False	False	False	127	.	20	.	0.03937007874015748	.	A:0:C:111:G:0:T:5:N:0:O:11	.	0,61,5,66	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17735	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:1:C:3:G:0:T:127:N:0:O:2	.	0,55,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17747	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	1,8,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	17818	C	T	N	1	near depth threshold	Alarm	False	False	False	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,7,1,13	.	.	.	depth near threshold	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	17965	T	C	N	1	near depth threshold	Alarm	False	False	False	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,6,1,15	.	.	.	depth near threshold	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18086	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.03636363636363636	.	A:0:C:159:G:0:T:6:N:0:O:0	.	2,58,4,107	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	18149	G	T	G	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.035175879396984924	.	A:0:C:0:G:189:T:7:N:0:O:3	.	4,68,3,131	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	18232	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.0979381443298969	.	A:0:C:168:G:0:T:19:N:0:O:7	.	9,69,10,125	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18311	T	C	T	16	ignore low frequency variant	Pass	False	False	True	332	.	20	.	0.030120481927710843	.	A:0:C:10:G:0:T:321:N:0:O:1	.	5,107,5,225	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:111:N:0:O:1	.	3,35,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18516	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	0,70,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18634	G	T	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:0:C:1:G:193:T:4:N:0:O:2	.	0,133,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:39:C:0:G:0:T:1:N:0:O:2	.	0,21,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:3:T:95:N:0:O:0	.	2,42,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,48,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,34,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	18994	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:109:T:0:N:0:O:3	.	3,33,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.04827586206896552	.	A:0:C:134:G:0:T:7:N:0:O:4	.	0,65,7,80	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	1,20,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19435	G	A	G	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:0:G:41:T:0:N:0:O:0	.	1,24,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19458	T	C	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:2:G:0:T:58:N:0:O:1	.	1,33,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.18518518518518517	.	A:0:C:22:G:0:T:5:N:0:O:0	.	0,20,5,7	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,33,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:2:C:0:G:41:T:0:N:0:O:0	.	2,13,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19498	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:62:G:0:T:2:N:0:O:2	.	2,39,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:43:T:0:N:0:O:2	.	1,14,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.03816793893129771	.	A:0:C:5:G:0:T:125:N:0:O:1	.	0,75,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19637	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:122:G:0:T:3:N:0:O:6	.	2,65,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.046153846153846156	.	A:0:C:124:G:0:T:6:N:0:O:0	.	4,62,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	19789	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:126:G:0:T:3:N:0:O:7	.	3,69,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19849	G	C	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:131:T:0:N:0:O:0	.	2,66,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19888	A	G	A	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.04020100502512563	.	A:189:C:0:G:8:T:0:N:0:O:2	.	2,61,6,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	1,30,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.05357142857142857	.	A:1:C:0:G:3:T:52:N:0:O:0	.	0,32,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:0:T:2:N:0:O:3	.	0,48,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.01818181818181818	.	A:4:C:0:G:195:T:0:N:0:O:21	.	4,68,0,152	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05128205128205128	.	A:0:C:0:G:109:T:6:N:0:O:2	.	5,79,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	20585	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:124:N:0:O:0	.	3,70,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20602	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:0:C:4:G:0:T:135:N:0:O:0	.	3,97,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20665	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:2:C:118:G:0:T:4:N:0:O:3	.	3,89,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20686	G	C	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:86:T:0:N:0:O:1	.	2,57,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20725	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:121:T:0:N:0:O:8	.	3,78,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:4:C:0:G:63:T:0:N:0:O:0	.	4,28,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:0:C:71:G:0:T:4:N:0:O:11	.	4,37,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20802	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:4:G:0:T:90:N:0:O:13	.	3,83,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	236	.	20	.	0.0211864406779661	.	A:227:C:0:G:5:T:0:N:0:O:4	.	5,97,0,139	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:118:T:0:N:0:O:0	.	3,35,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21096	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:0:G:3:T:0:N:0:O:0	.	0,24,3,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.12	.	A:0:C:0:G:41:T:6:N:0:O:3	.	0,31,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21150	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:0:T:1:N:0:O:0	.	0,22,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21151	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:45:T:0:N:0:O:1	.	0,27,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:47:G:0:T:1:N:0:O:0	.	0,23,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21220	G	T	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:0:G:21:T:1:N:0:O:0	.	0,6,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21267	A	T	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:59:C:0:G:0:T:3:N:0:O:1	.	3,27,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21351	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:2:C:0:G:56:T:0:N:0:O:0	.	0,28,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21364	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:39:G:0:T:1:N:0:O:1	.	1,8,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	2,17,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21596	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,55,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21653	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:99:N:0:O:1	.	1,62,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:85:G:0:T:2:N:0:O:5	.	2,29,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21813	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:122:N:0:O:1	.	3,59,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	21941	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:0:G:124:T:5:N:0:O:3	.	3,61,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22079	C	T	N	2	allele in negative control	Alarm	False	False	False	128	.	20	.	0.03125	.	A:0:C:122:G:0:T:4:N:0:O:2	.	2,84,2,44	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22132	G	A	N	2	allele in negative control	Alarm	False	False	False	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,55,0,55	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:96:T:0:N:0:O:3	.	1,45,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:127:C:0:G:0:T:3:N:0:O:0	.	2,77,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22210	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,76,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22219	T	G	N	2	allele in negative control	Alarm	False	False	False	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:94:N:0:O:0	.	2,37,0,59	.	.	.	.	allele in NTC	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22241	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.06299212598425197	.	A:0:C:0:G:119:T:8:N:0:O:0	.	5,65,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:0:C:4:G:0:T:143:N:0:O:0	.	0,42,4,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,47,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22858	C	T	C	16	ignore low frequency variant	Pass	False	False	True	262	.	20	.	0.022900763358778626	.	A:0:C:256:G:0:T:6:N:0:O:0	.	4,147,2,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	22922	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:122:C:0:G:4:T:0:N:0:O:3	.	4,52,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23090	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:0:G:110:T:5:N:0:O:1	.	1,65,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:0:C:137:G:0:T:4:N:0:O:28	.	0,107,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	148	.	20	.	0.9324324324324325	.	A:0:C:0:G:138:T:0:N:0:O:10	.	57,67,81,81	209.237	1776.6	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	23451	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:101:G:0:T:4:N:0:O:14	.	2,41,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:5:C:0:G:94:T:0:N:0:O:9	.	5,46,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:103:N:0:O:5	.	0,67,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:2:T:0:N:0:O:2	.	2,45,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23660	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:99:T:4:N:0:O:2	.	4,56,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23693	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:3:G:0:T:126:N:0:O:4	.	0,81,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:0:C:120:G:0:T:4:N:0:O:2	.	2,68,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23833	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:0:C:111:G:0:T:6:N:0:O:2	.	2,44,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.12244897959183673	.	A:0:C:86:G:0:T:12:N:0:O:0	.	0,59,12,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,60,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23936	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.06716417910447761	.	A:0:C:124:G:0:T:9:N:0:O:1	.	3,56,6,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02702702702702703	.	A:144:C:0:G:0:T:4:N:0:O:0	.	3,64,1,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.06896551724137931	.	A:4:C:0:G:0:T:54:N:0:O:0	.	4,19,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	3,13,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:87:G:0:T:5:N:0:O:1	.	2,58,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:0:T:3:N:0:O:0	.	0,57,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24150	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:127:G:0:T:3:N:0:O:10	.	0,67,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:59:G:0:T:3:N:0:O:0	.	0,45,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:84:T:0:N:0:O:2	.	2,17,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:83:T:0:N:0:O:4	.	3,18,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24392	G	C	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:111:T:0:N:0:O:0	.	1,58,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24442	C	T	C	16	ignore low frequency variant	Pass	False	False	True	270	.	20	.	0.022222222222222223	.	A:0:C:264:G:0:T:6:N:0:O:0	.	4,132,2,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24579	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:0:C:142:G:0:T:4:N:0:O:1	.	2,80,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24643	T	A	T	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.03125	.	A:5:C:0:G:0:T:138:N:0:O:17	.	5,91,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24649	G	C	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.03333333333333333	.	A:0:C:5:G:145:T:0:N:0:O:0	.	4,82,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:92:G:0:T:4:N:0:O:4	.	0,73,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24719	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:96:G:0:T:2:N:0:O:4	.	1,72,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24762	A	C	A	16	ignore low frequency variant	Pass	False	False	True	266	.	20	.	0.022556390977443608	.	A:259:C:6:G:1:T:0:N:0:O:0	.	4,150,2,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:4:C:0:G:119:T:0:N:0:O:17	.	4,75,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:111:C:0:G:5:T:0:N:0:O:0	.	5,57,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24783	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:100:C:4:G:0:T:0:N:0:O:0	.	1,51,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:81:T:0:N:0:O:0	.	0,61,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:0:G:3:T:90:N:0:O:1	.	0,75,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	24931	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:89:N:0:O:1	.	0,66,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25016	T	C	T	16	ignore low frequency variant	Pass	False	False	True	275	.	20	.	0.03272727272727273	.	A:0:C:9:G:0:T:265:N:0:O:1	.	5,169,4,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25362	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:1:C:0:G:119:T:4:N:0:O:0	.	0,31,4,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25394	T	G	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:0:G:3:T:133:N:0:O:2	.	2,60,1,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25417	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:2:G:0:T:0:N:0:O:0	.	2,12,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:3:T:115:N:0:O:1	.	3,30,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25428	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:0:C:5:G:0:T:137:N:0:O:0	.	4,65,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25441	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:124:G:0:T:4:N:0:O:17	.	1,76,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25518	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:108:N:0:O:2	.	0,60,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25533	T	A	T	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.03496503496503497	.	A:5:C:0:G:0:T:138:N:0:O:0	.	2,53,3,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25554	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:0:C:3:G:0:T:69:N:0:O:0	.	0,32,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	1.0	.	A:0:C:0:G:0:T:131:N:0:O:0	.	45,45,86,86	69.237	1952.8	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	25591	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:66:C:0:G:2:T:0:N:0:O:2	.	2,18,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:0:C:2:G:42:T:0:N:0:O:2	.	2,10,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.057692307692307696	.	A:0:C:40:G:0:T:3:N:0:O:9	.	2,27,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25772	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:0:T:49:N:0:O:0	.	1,26,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25774	T	A	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:0:T:49:N:0:O:0	.	1,32,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25775	G	A	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:2:C:0:G:57:T:0:N:0:O:0	.	2,31,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:54:G:0:T:2:N:0:O:1	.	0,31,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,26,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25850	G	C	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:1:G:36:T:0:N:0:O:0	.	0,14,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:2:C:0:G:0:T:47:N:0:O:0	.	1,18,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:0:C:47:G:0:T:2:N:0:O:1	.	1,27,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	25888	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:2:G:0:T:66:N:0:O:3	.	0,33,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:58:C:3:G:0:T:0:N:0:O:0	.	3,23,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25892	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:1:T:49:N:0:O:0	.	1,12,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25923	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:42:N:0:O:2	.	0,11,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	25968	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:133:C:0:G:1:T:3:N:0:O:0	.	1,86,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26196	G	T	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.04666666666666667	.	A:0:C:0:G:143:T:7:N:0:O:0	.	7,65,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26221	G	T	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:0:G:141:T:3:N:0:O:3	.	0,88,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:80:T:0:N:0:O:0	.	2,46,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	2,51,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:0:G:3:T:0:N:0:O:0	.	3,34,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.058823529411764705	.	A:6:C:0:G:96:T:0:N:0:O:0	.	6,37,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26559	C	A	C	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.027149321266968326	.	A:6:C:211:G:0:T:0:N:0:O:4	.	4,114,2,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:111:C:0:G:0:T:3:N:0:O:3	.	3,44,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.10416666666666667	.	A:10:C:0:G:86:T:0:N:0:O:0	.	10,19,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.053691275167785234	.	A:0:C:141:G:0:T:8:N:0:O:0	.	0,107,8,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26915	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.0743801652892562	.	A:111:C:0:G:0:T:9:N:0:O:1	.	2,48,7,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	26972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,48,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27052	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:86:G:0:T:2:N:0:O:6	.	0,54,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:2:T:0:N:0:O:0	.	2,27,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27103	C	T	N	2	allele in negative control	Alarm	False	False	False	65	.	20	.	0.09230769230769231	.	A:0:C:59:G:0:T:6:N:0:O:0	.	0,42,6,23	.	.	.	.	allele in NTC	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:63:G:1:T:2:N:0:O:0	.	0,43,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.03932584269662921	.	A:0:C:170:G:0:T:7:N:0:O:1	.	1,69,6,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27245	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.041379310344827586	.	A:6:C:0:G:0:T:139:N:0:O:0	.	3,65,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27246	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.05185185185185185	.	A:128:C:0:G:0:T:7:N:0:O:0	.	3,58,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27247	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.05555555555555555	.	A:0:C:119:G:0:T:7:N:0:O:0	.	3,62,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27360	T	A	T	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.052980132450331126	.	A:8:C:0:G:0:T:141:N:0:O:2	.	2,69,6,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:4:G:0:T:104:N:0:O:0	.	0,53,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0379746835443038	.	A:0:C:139:G:0:T:6:N:0:O:13	.	0,72,6,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27481	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.03608247422680412	.	A:0:C:161:G:0:T:7:N:0:O:26	.	3,90,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27485	T	A	T	16	ignore low frequency variant	Pass	False	False	True	227	.	20	.	0.01762114537444934	.	A:4:C:0:G:0:T:173:N:0:O:50	.	3,137,1,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27523	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	0,37,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27542	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:59:G:0:T:2:N:0:O:0	.	1,37,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	27556	G	T	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:0:C:0:G:56:T:3:N:0:O:2	.	1,28,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:46:C:0:G:1:T:0:N:0:O:1	.	1,22,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:2:C:52:G:0:T:0:N:0:O:3	.	2,34,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:56:C:1:G:0:T:4:N:0:O:15	.	3,50,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27692	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:35:N:0:O:0	.	0,22,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27707	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:46:G:0:T:1:N:0:O:1	.	0,27,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27708	G	T	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:47:T:1:N:0:O:0	.	0,27,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27736	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:1:G:0:T:0:N:0:O:1	.	1,22,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:1:T:0:N:0:O:0	.	1,13,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:2:C:0:G:53:T:0:N:0:O:3	.	2,22,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28001	G	T	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:0:G:127:T:5:N:0:O:0	.	4,66,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	28123	G	T	G	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.04072398190045249	.	A:1:C:0:G:211:T:9:N:0:O:0	.	1,83,8,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28201	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:0:C:131:G:0:T:4:N:0:O:0	.	2,68,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:3:C:0:G:1:T:61:N:0:O:3	.	1,34,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:88:G:0:T:2:N:0:O:4	.	0,59,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:135:G:0:T:3:N:0:O:0	.	1,65,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28395	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.06206896551724138	.	A:0:C:1:G:134:T:9:N:0:O:1	.	6,62,3,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28568	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:1:C:0:G:96:T:3:N:0:O:0	.	1,45,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28630	T	C	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.03787878787878788	.	A:0:C:5:G:0:T:119:N:0:O:8	.	4,77,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28669	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:0:G:120:T:4:N:0:O:0	.	4,65,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:87:G:0:T:0:N:0:O:20	.	2,42,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:84:C:0:G:3:T:0:N:0:O:1	.	3,25,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,43,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:82:G:0:T:2:N:0:O:5	.	0,49,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:0:C:5:G:0:T:120:N:0:O:4	.	1,53,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:90:N:0:O:4	.	0,55,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28903	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:0:G:121:T:3:N:0:O:0	.	1,45,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:5:C:0:G:79:T:0:N:0:O:1	.	5,17,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:5:C:0:G:112:T:0:N:0:O:0	.	1,43,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.06666666666666667	.	A:0:C:36:G:0:T:3:N:0:O:6	.	0,25,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:78:G:0:T:3:N:0:O:0	.	0,44,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	28976	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:108:N:0:O:1	.	1,43,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29020	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:136:C:0:G:3:T:0:N:0:O:2	.	0,123,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	0,50,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29063	G	T	G	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.078125	.	A:2:C:0:G:57:T:5:N:0:O:0	.	3,36,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29096	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:94:T:3:N:0:O:1	.	1,50,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29109	C	A	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:109:G:0:T:0:N:0:O:3	.	3,52,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29118	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:95:G:0:T:0:N:0:O:0	.	2,35,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29143	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:121:C:0:G:4:T:0:N:0:O:0	.	1,63,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29167	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:92:G:0:T:3:N:0:O:8	.	0,64,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:84:T:0:N:0:O:1	.	1,40,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:75:N:0:O:2	.	0,57,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.060240963855421686	.	A:76:C:0:G:5:T:0:N:0:O:2	.	0,36,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29444	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:122:C:4:G:0:T:0:N:0:O:2	.	0,64,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29468	G	C	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:3:G:140:T:0:N:0:O:1	.	2,51,1,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29520	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:1:C:138:G:0:T:3:N:0:O:11	.	0,92,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	29541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:0:C:144:G:0:T:4:N:0:O:1	.	2,65,2,84	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	29639	G	T	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:0:C:0:G:152:T:5:N:0:O:0	.	3,71,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00159	artic-pipeline	NB12	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00159	artic-pipeline	NB12	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	11	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	169	20	20	0.046511627906976744	0.0	A:0:C:41:G:0:T:2:N:0:O:0	A:0:C:169:G:0:T:0:N:0:O:0	0,9,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	169	20	20	0.034482758620689655	0.0	A:0:C:2:G:0:T:56:N:0:O:0	A:0:C:0:G:0:T:169:N:0:O:0	0,8,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	203	C	G	C	16	ignore low frequency variant	Pass	False	False	True	42	174	20	20	0.023809523809523808	0.0	A:0:C:40:G:1:T:0:N:0:O:1	A:3:C:171:G:0:T:0:N:0:O:0	0,6,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	61	169	20	20	0.9508196721311475	1.0	A:0:C:0:G:1:T:58:N:0:O:2	A:0:C:0:G:0:T:169:N:0:O:0	3,5,55,56	69.237	1357.5	yes	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	296	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	169	20	20	0.02127659574468085	0.0	A:45:C:0:G:1:T:0:N:0:O:1	A:169:C:0:G:0:T:0:N:0:O:0	0,3,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	154	20	20	0.024793388429752067	0.0	A:118:C:0:G:3:T:0:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	3,48,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	577	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	154	20	20	0.01904761904761905	0.0	A:0:C:2:G:0:T:91:N:0:O:12	A:0:C:0:G:0:T:154:N:0:O:0	2,52,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	776	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	141	20	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:0:C:141:G:0:T:0:N:0:O:0	0,61,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	794	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	141	20	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:141:G:0:T:0:N:0:O:0	0,46,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	141	20	20	0.044444444444444446	0.0	A:85:C:0:G:1:T:4:N:0:O:0	A:141:C:0:G:0:T:0:N:0:O:0	4,17,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	953	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	141	20	20	0.02631578947368421	0.0	A:0:C:2:G:0:T:74:N:0:O:0	A:0:C:0:G:0:T:141:N:0:O:0	0,61,2,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1002	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	304	20	20	0.028368794326241134	0.0	A:137:C:0:G:4:T:0:N:0:O:0	A:304:C:0:G:0:T:0:N:0:O:0	1,63,3,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	179	20	20	0.9855072463768116	1.0	A:0:C:0:G:0:T:136:N:0:O:2	A:0:C:0:G:0:T:179:N:0:O:0	71,73,65,65	70.0	1438.6	yes	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	180	20	20	0.020618556701030927	0.0	A:2:C:0:G:74:T:0:N:0:O:21	A:0:C:0:G:179:T:0:N:0:O:1	1,8,1,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	179	20	20	0.022988505747126436	0.0	A:0:C:83:G:0:T:2:N:0:O:2	A:1:C:178:G:0:T:0:N:0:O:0	1,56,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	48	20	20	0.01904761904761905	0.0	A:2:C:0:G:97:T:0:N:0:O:6	A:0:C:0:G:47:T:1:N:0:O:0	2,33,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	97	20	20	0.027522935779816515	0.0	A:0:C:106:G:0:T:3:N:0:O:0	A:0:C:97:G:0:T:0:N:0:O:0	0,65,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	155	190	20	20	0.01935483870967742	0.0	A:3:C:103:G:0:T:1:N:0:O:48	A:0:C:189:G:0:T:0:N:0:O:1	1,89,2,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1636	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	189	20	20	0.024390243902439025	0.0	A:2:C:0:G:78:T:0:N:0:O:2	A:0:C:0:G:189:T:0:N:0:O:0	1,7,1,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1706	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	189	20	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	0,47,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	189	20	20	0.02040816326530612	0.005291005291005291	A:0:C:0:G:96:T:2:N:0:O:0	A:0:C:0:G:188:T:1:N:0:O:0	2,57,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	189	20	20	0.02666666666666667	0.0	A:71:C:0:G:2:T:0:N:0:O:2	A:189:C:0:G:0:T:0:N:0:O:0	1,9,1,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	1959	C	G	C	16	ignore low frequency variant	Pass	False	False	True	126	147	20	20	0.023809523809523808	0.0	A:0:C:123:G:3:T:0:N:0:O:0	A:0:C:147:G:0:T:0:N:0:O:0	3,68,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	147	20	20	0.022222222222222223	0.0	A:0:C:88:G:0:T:2:N:0:O:0	A:1:C:146:G:0:T:0:N:0:O:0	0,60,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	147	20	20	0.0449438202247191	0.0	A:4:C:0:G:82:T:0:N:0:O:3	A:0:C:0:G:146:T:1:N:0:O:0	4,27,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	2225	A	G	A	16	ignore low frequency variant	Pass	False	False	True	226	244	20	20	0.030973451327433628	0.0	A:214:C:0:G:7:T:0:N:0:O:5	A:244:C:0:G:0:T:0:N:0:O:0	7,95,0,131	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2258	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	106	20	20	0.024	0.0	A:3:C:0:G:121:T:0:N:0:O:1	A:0:C:0:G:106:T:0:N:0:O:0	3,57,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	117	196	20	20	0.02564102564102564	0.0	A:113:C:3:G:0:T:0:N:0:O:1	A:196:C:0:G:0:T:0:N:0:O:0	3,51,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	130	191	20	20	0.023076923076923078	0.0	A:127:C:3:G:0:T:0:N:0:O:0	A:191:C:0:G:0:T:0:N:0:O:0	3,64,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	191	20	20	0.02608695652173913	0.0	A:111:C:0:G:3:T:0:N:0:O:1	A:191:C:0:G:0:T:0:N:0:O:0	3,42,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	191	20	20	0.027777777777777776	0.0	A:3:C:0:G:103:T:0:N:0:O:2	A:0:C:0:G:191:T:0:N:0:O:0	2,35,1,73	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	191	20	20	0.020618556701030927	0.0	A:1:C:93:G:0:T:2:N:0:O:1	A:1:C:190:G:0:T:0:N:0:O:0	0,89,2,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	2846	A	G	A	16	ignore low frequency variant	Pass	False	False	True	147	189	20	20	0.02040816326530612	0.0	A:144:C:0:G:3:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	0,84,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	126	226	20	20	0.6190476190476191	1.0	A:0:C:0:G:0:T:78:N:0:O:48	A:0:C:0:G:0:T:226:N:0:O:0	48,96,30,30	53.555	1404.4	yes	.	.	.	mixed position	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	3113	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	209	20	20	0.025210084033613446	0.0	A:3:C:0:G:116:T:0:N:0:O:0	A:0:C:0:G:209:T:0:N:0:O:0	3,49,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3131	C	A	C	16	ignore low frequency variant	Pass	False	False	True	108	180	20	20	0.018518518518518517	0.0	A:2:C:96:G:0:T:0:N:0:O:10	A:0:C:180:G:0:T:0:N:0:O:0	2,69,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	179	20	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	0,43,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3133	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	179	20	20	0.022988505747126436	0.0	A:84:C:2:G:0:T:0:N:0:O:1	A:178:C:0:G:0:T:1:N:0:O:0	0,42,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	82	179	20	20	0.036585365853658534	0.0	A:0:C:0:G:79:T:3:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	0,35,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	179	20	20	0.02	0.0	A:1:C:2:G:0:T:95:N:0:O:2	A:0:C:0:G:0:T:179:N:0:O:0	0,64,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	173	20	20	0.03409090909090909	0.0	A:0:C:0:G:3:T:84:N:0:O:1	A:0:C:0:G:0:T:173:N:0:O:0	3,12,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3220	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	173	20	20	0.026785714285714284	0.0	A:109:C:0:G:3:T:0:N:0:O:0	A:173:C:0:G:0:T:0:N:0:O:0	3,40,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	173	20	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:101:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,62,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	53	172	20	20	0.07547169811320754	0.0	A:48:C:0:G:0:T:4:N:0:O:1	A:172:C:0:G:0:T:0:N:0:O:0	4,33,0,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3451	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	173	20	20	0.058333333333333334	0.057803468208092484	A:0:C:7:G:0:T:113:N:0:O:0	A:0:C:10:G:0:T:163:N:0:O:0	6,69,1,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3517	A	G	A	16	ignore low frequency variant	Pass	False	False	True	146	177	20	20	0.02054794520547945	0.03389830508474576	A:143:C:0:G:3:T:0:N:0:O:0	A:171:C:0:G:6:T:0:N:0:O:0	2,74,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	177	20	20	0.02857142857142857	0.0	A:0:C:102:G:0:T:3:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	0,85,3,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3542	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	177	20	20	0.023076923076923078	0.0	A:127:C:0:G:3:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	3,74,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	177	20	20	0.021897810218978103	0.0	A:134:C:0:G:3:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	3,52,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3875	G	C	G	16	ignore low frequency variant	Pass	False	False	True	99	132	20	20	0.020202020202020204	0.0	A:0:C:2:G:97:T:0:N:0:O:0	A:0:C:0:G:131:T:1:N:0:O:0	2,36,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	125	132	20	20	0.032	0.0	A:4:C:0:G:0:T:113:N:0:O:8	A:0:C:1:G:0:T:131:N:0:O:0	4,67,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	4236	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	130	20	20	0.020618556701030927	0.0	A:93:C:0:G:2:T:0:N:0:O:2	A:130:C:0:G:0:T:0:N:0:O:0	2,38,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	4238	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	130	20	20	0.031914893617021274	0.0	A:0:C:0:G:3:T:91:N:0:O:0	A:0:C:0:G:0:T:130:N:0:O:0	3,35,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	130	20	20	0.05319148936170213	0.0	A:89:C:5:G:0:T:0:N:0:O:0	A:130:C:0:G:0:T:0:N:0:O:0	5,27,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	194	307	20	20	0.02577319587628866	0.006514657980456026	A:0:C:0:G:181:T:5:N:0:O:8	A:0:C:0:G:305:T:2:N:0:O:0	0,150,5,44	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	176	20	20	0.025423728813559324	0.0	A:0:C:3:G:0:T:111:N:0:O:4	A:0:C:0:G:0:T:176:N:0:O:0	0,77,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	5100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	58	20	20	0.02197802197802198	0.017241379310344827	A:2:C:76:G:0:T:0:N:0:O:13	A:1:C:57:G:0:T:0:N:0:O:0	0,84,2,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	5285	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	41	20	20	0.02197802197802198	0.0	A:2:C:1:G:0:T:88:N:0:O:0	A:0:C:0:G:0:T:41:N:0:O:0	0,67,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	82	20	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:82:T:0:N:0:O:0	2,19,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	64	20	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:64:T:0:N:0:O:0	1,52,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	198	20	20	0.13513513513513514	0.0	A:0:C:63:G:0:T:10:N:0:O:1	A:0:C:198:G:0:T:0:N:0:O:0	0,61,10,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	176	20	20	0.024390243902439025	0.0	A:2:C:0:G:78:T:0:N:0:O:2	A:0:C:0:G:174:T:2:N:0:O:0	2,9,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	231	20	20	0.06172839506172839	0.0	A:0:C:75:G:0:T:5:N:0:O:1	A:1:C:230:G:0:T:0:N:0:O:0	0,61,5,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	231	20	20	0.022222222222222223	0.0	A:88:C:0:G:2:T:0:N:0:O:0	A:231:C:0:G:0:T:0:N:0:O:0	2,25,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6147	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	228	20	20	0.02247191011235955	0.0	A:0:C:83:G:0:T:2:N:0:O:4	A:1:C:227:G:0:T:0:N:0:O:0	0,52,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	228	20	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:80:N:0:O:14	A:0:C:0:G:0:T:228:N:0:O:0	0,78,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	144	20	20	0.028985507246376812	0.0	A:65:C:0:G:2:T:0:N:0:O:2	A:142:C:0:G:0:T:2:N:0:O:0	2,42,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6272	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	168	20	20	0.02459016393442623	0.0	A:0:C:3:G:0:T:119:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	0,65,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	177	20	20	0.021739130434782608	0.0	A:2:C:0:G:88:T:0:N:0:O:2	A:0:C:0:G:177:T:0:N:0:O:0	2,30,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	174	20	20	0.018867924528301886	0.0	A:0:C:0:G:2:T:97:N:0:O:7	A:0:C:0:G:0:T:174:N:0:O:0	0,71,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	50	20	20	0.034782608695652174	0.0	A:0:C:1:G:4:T:108:N:0:O:2	A:0:C:0:G:0:T:50:N:0:O:0	0,71,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	204	37	20	20	0.03431372549019608	0.0	A:187:C:0:G:7:T:1:N:0:O:9	A:37:C:0:G:0:T:0:N:0:O:0	7,83,0,121	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	37	20	20	0.020833333333333332	0.0	A:0:C:179:G:0:T:4:N:0:O:9	A:0:C:37:G:0:T:0:N:0:O:0	0,124,4,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6828	C	T	C	16	ignore low frequency variant	Pass	False	False	True	191	44	20	20	0.020942408376963352	0.0	A:0:C:183:G:0:T:4:N:0:O:4	A:0:C:44:G:0:T:0:N:0:O:0	0,144,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	25	20	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:25:T:0:N:0:O:0	2,34,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	26	20	20	0.024096385542168676	0.0	A:2:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:26:T:0:N:0:O:0	2,27,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6890	T	A	T	16	ignore low frequency variant	Pass	False	False	True	106	26	20	20	0.02830188679245283	0.0	A:3:C:0:G:1:T:102:N:0:O:0	A:0:C:0:G:0:T:26:N:0:O:0	3,61,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	21	20	20	0.046511627906976744	0.0	A:82:C:0:G:0:T:4:N:0:O:0	A:21:C:0:G:0:T:0:N:0:O:0	0,64,4,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	7159	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	178	20	20	0.02608695652173913	0.0	A:111:C:0:G:3:T:0:N:0:O:1	A:178:C:0:G:0:T:0:N:0:O:0	2,58,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	7266	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	177	20	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,54,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	178	20	20	0.021505376344086023	0.0	A:0:C:0:G:2:T:90:N:0:O:1	A:0:C:0:G:0:T:178:N:0:O:0	2,27,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	176	20	20	0.08641975308641975	0.0	A:7:C:0:G:73:T:0:N:0:O:1	A:0:C:0:G:174:T:2:N:0:O:0	7,13,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	75	20	20	0.02631578947368421	0.0	A:0:C:3:G:0:T:110:N:0:O:1	A:0:C:0:G:0:T:75:N:0:O:0	0,71,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	8431	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	35	20	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:88:N:0:O:2	A:0:C:0:G:0:T:35:N:0:O:0	0,54,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	35	20	20	0.031746031746031744	0.0	A:61:C:0:G:2:T:0:N:0:O:0	A:35:C:0:G:0:T:0:N:0:O:0	1,10,1,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	24	20	20	0.02564102564102564	0.0	A:0:C:3:G:0:T:114:N:0:O:0	A:0:C:0:G:0:T:24:N:0:O:0	0,71,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	8771	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	114	20	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:114:C:0:G:0:T:0:N:0:O:0	2,57,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	75	20	20	0.02531645569620253	0.0	A:2:C:1:G:74:T:0:N:0:O:2	A:0:C:0:G:75:T:0:N:0:O:0	2,15,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	182	20	20	0.02459016393442623	0.0	A:3:C:0:G:110:T:0:N:0:O:9	A:0:C:0:G:181:T:1:N:0:O:0	3,48,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	109	20	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:109:G:0:T:0:N:0:O:0	0,62,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	9276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	110	20	20	0.025423728813559324	0.0	A:3:C:0:G:115:T:0:N:0:O:0	A:0:C:0:G:109:T:1:N:0:O:0	1,57,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	148	20	20	0.05063291139240506	0.0	A:0:C:72:G:0:T:4:N:0:O:3	A:0:C:148:G:0:T:0:N:0:O:0	1,36,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	149	20	20	0.022058823529411766	0.013422818791946308	A:0:C:0:G:133:T:3:N:0:O:0	A:0:C:0:G:147:T:2:N:0:O:0	0,71,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	113	120	20	20	0.035398230088495575	0.0	A:4:C:0:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:120:N:0:O:0	0,59,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	195	20	20	0.023076923076923078	0.0	A:0:C:124:G:0:T:3:N:0:O:3	A:0:C:195:G:0:T:0:N:0:O:0	0,113,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	195	20	20	0.023668639053254437	0.0	A:0:C:164:G:0:T:4:N:0:O:1	A:0:C:195:G:0:T:0:N:0:O:0	0,141,4,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	151	20	20	0.022388059701492536	0.006622516556291391	A:3:C:119:G:0:T:1:N:0:O:11	A:1:C:150:G:0:T:0:N:0:O:0	0,59,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	151	20	20	0.02912621359223301	0.0	A:1:C:90:G:0:T:3:N:0:O:9	A:0:C:151:G:0:T:0:N:0:O:0	0,67,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	151	20	20	0.030303030303030304	0.0	A:0:C:84:G:0:T:3:N:0:O:12	A:0:C:151:G:0:T:0:N:0:O:0	3,37,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	151	20	20	0.02247191011235955	0.006622516556291391	A:87:C:0:G:2:T:0:N:0:O:0	A:150:C:0:G:1:T:0:N:0:O:0	2,43,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	10129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	199	295	20	20	0.020100502512562814	0.0	A:0:C:4:G:0:T:189:N:0:O:6	A:0:C:0:G:0:T:295:N:0:O:0	0,134,4,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	10190	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	150	20	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:93:N:0:O:3	A:0:C:0:G:0:T:150:N:0:O:0	0,73,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	150	20	20	0.03296703296703297	0.0	A:3:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:150:T:0:N:0:O:0	3,25,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	282	20	20	0.037383177570093455	0.0	A:101:C:1:G:4:T:0:N:0:O:1	A:282:C:0:G:0:T:0:N:0:O:0	4,40,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	10851	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	212	20	20	0.9202898550724637	1.0	A:0:C:0:G:0:T:127:N:0:O:11	A:0:C:0:G:0:T:212:N:0:O:0	68,79,59,59	66.227	1449.8	yes	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	211	20	20	0.02830188679245283	0.0	A:0:C:0:G:3:T:101:N:0:O:2	A:0:C:0:G:0:T:211:N:0:O:0	0,62,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	121	189	20	20	0.024793388429752067	0.0	A:3:C:107:G:0:T:0:N:0:O:11	A:0:C:189:G:0:T:0:N:0:O:0	2,65,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	11083	G	T	G	7	mixed illumina variant	Check	True	False	True	90	172	20	20	0.2	0.26744186046511625	A:1:C:0:G:57:T:18:N:0:O:14	A:0:C:0:G:119:T:46:N:0:O:7	9,49,9,41	8.111	.	mixed	.	.	mismatch(m+s)	.	0.15<maf<0.25	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	178	215	20	20	0.016853932584269662	0.0	A:0:C:0:G:135:T:3:N:0:O:40	A:0:C:0:G:215:T:0:N:0:O:0	3,96,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	215	20	20	0.030927835051546393	0.0	A:0:C:0:G:3:T:94:N:0:O:0	A:0:C:0:G:0:T:215:N:0:O:0	3,41,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	11445	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	113	20	20	0.023809523809523808	0.0	A:3:C:0:G:0:T:122:N:0:O:1	A:0:C:0:G:0:T:113:N:0:O:0	0,70,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	113	20	20	0.04310344827586207	0.008849557522123894	A:111:C:0:G:0:T:5:N:0:O:0	A:112:C:0:G:0:T:1:N:0:O:0	5,53,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	151	20	20	0.030303030303030304	0.0	A:64:C:0:G:2:T:0:N:0:O:0	A:151:C:0:G:0:T:0:N:0:O:0	0,47,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	155	20	20	0.03669724770642202	0.0	A:0:C:80:G:0:T:4:N:0:O:25	A:0:C:152:G:0:T:0:N:0:O:3	0,87,4,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	170	20	20	0.018518518518518517	0.0	A:2:C:0:G:85:T:0:N:0:O:21	A:0:C:0:G:168:T:2:N:0:O:0	0,74,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12289	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	170	20	20	0.032520325203252036	0.0	A:0:C:4:G:0:T:118:N:0:O:1	A:0:C:0:G:0:T:170:N:0:O:0	3,70,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12386	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	170	20	20	0.031914893617021274	0.0	A:3:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	3,68,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	170	20	20	0.0297029702970297	0.0	A:3:C:0:G:94:T:0:N:0:O:4	A:0:C:0:G:170:T:0:N:0:O:0	3,36,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	123	20	20	0.045454545454545456	0.0	A:0:C:84:G:0:T:4:N:0:O:0	A:0:C:123:G:0:T:0:N:0:O:0	0,64,4,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	102	20	20	0.024193548387096774	0.0	A:0:C:3:G:0:T:119:N:0:O:2	A:0:C:0:G:0:T:102:N:0:O:0	0,67,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	138	102	20	20	0.021739130434782608	0.0	A:3:C:0:G:0:T:131:N:0:O:4	A:0:C:0:G:0:T:102:N:0:O:0	3,55,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	102	20	20	0.03571428571428571	0.0	A:105:C:0:G:4:T:0:N:0:O:3	A:102:C:0:G:0:T:0:N:0:O:0	4,36,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	102	20	20	0.038834951456310676	0.0	A:0:C:99:G:0:T:4:N:0:O:0	A:0:C:102:G:0:T:0:N:0:O:0	0,69,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	145	20	20	0.02857142857142857	0.0	A:3:C:0:G:101:T:0:N:0:O:1	A:0:C:0:G:145:T:0:N:0:O:0	3,30,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13300	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	145	20	20	0.019801980198019802	0.0	A:97:C:0:G:1:T:2:N:0:O:1	A:145:C:0:G:0:T:0:N:0:O:0	0,36,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13414	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	82	20	20	0.030303030303030304	0.0	A:0:C:0:G:3:T:95:N:0:O:1	A:0:C:0:G:0:T:82:N:0:O:0	0,58,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	96	20	20	0.11494252873563218	0.0	A:0:C:75:G:0:T:10:N:0:O:2	A:0:C:96:G:0:T:0:N:0:O:0	0,71,10,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	96	20	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:88:N:0:O:2	A:0:C:0:G:0:T:96:N:0:O:0	0,59,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	96	20	20	0.058823529411764705	0.0	A:6:C:0:G:91:T:0:N:0:O:5	A:0:C:0:G:96:T:0:N:0:O:0	6,37,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	62	20	20	0.018691588785046728	0.0	A:2:C:95:G:0:T:0:N:0:O:10	A:0:C:62:G:0:T:0:N:0:O:0	2,47,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	82	196	20	20	0.975609756097561	0.9846938775510204	A:0:C:0:G:1:T:80:N:0:O:1	A:0:C:0:G:0:T:193:N:0:O:3	49,51,31,31	466.379	1188.0	yes	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	196	20	20	0.03125	0.0	A:3:C:92:G:0:T:0:N:0:O:1	A:0:C:196:G:0:T:0:N:0:O:0	0,56,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	179	20	20	0.029411764705882353	0.0	A:3:C:0:G:97:T:0:N:0:O:2	A:0:C:0:G:179:T:0:N:0:O:0	3,45,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	14635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	186	20	20	0.02608695652173913	0.0	A:3:C:0:G:112:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	3,44,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	89	20	20	0.030303030303030304	0.0	A:0:C:3:G:0:T:95:N:0:O:1	A:0:C:0:G:0:T:89:N:0:O:0	0,64,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	105	20	20	0.022222222222222223	0.0	A:2:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:105:T:0:N:0:O:0	2,22,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	103	20	20	0.021505376344086023	0.0	A:2:C:0:G:88:T:0:N:0:O:3	A:0:C:0:G:101:T:2:N:0:O:0	2,21,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	101	20	20	0.038461538461538464	0.0	A:0:C:3:G:0:T:73:N:0:O:2	A:0:C:0:G:0:T:101:N:0:O:0	0,69,3,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	66	170	20	20	0.015151515151515152	0.0	A:0:C:1:G:0:T:47:N:0:O:18	A:1:C:0:G:0:T:169:N:0:O:0	0,43,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	170	20	20	0.08163265306122448	0.0	A:1:C:43:G:0:T:4:N:0:O:1	A:1:C:169:G:0:T:0:N:0:O:0	0,26,4,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	22	20	20	0.023809523809523808	0.0	A:1:C:0:G:2:T:78:N:0:O:3	A:0:C:0:G:0:T:22:N:0:O:0	2,21,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	23	20	20	0.05217391304347826	0.0	A:0:C:1:G:107:T:6:N:0:O:1	A:0:C:0:G:23:T:0:N:0:O:0	6,53,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	213	20	20	0.04225352112676056	0.0	A:3:C:0:G:60:T:0:N:0:O:8	A:0:C:0:G:212:T:1:N:0:O:0	3,21,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	16834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	213	20	20	0.02702702702702703	0.0	A:0:C:2:G:0:T:72:N:0:O:0	A:0:C:0:G:0:T:213:N:0:O:0	0,67,2,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	213	20	20	0.030612244897959183	0.0	A:0:C:0:G:3:T:95:N:0:O:0	A:0:C:0:G:0:T:213:N:0:O:0	0,69,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	212	20	20	0.02666666666666667	0.0	A:73:C:0:G:2:T:0:N:0:O:0	A:212:C:0:G:0:T:0:N:0:O:0	2,39,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	16852	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	213	20	20	0.02040816326530612	0.0	A:1:C:0:G:47:T:0:N:0:O:1	A:0:C:0:G:211:T:2:N:0:O:0	0,6,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	213	20	20	0.02127659574468085	0.0	A:2:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:213:T:0:N:0:O:0	1,34,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	212	20	20	0.036585365853658534	0.0	A:79:C:3:G:0:T:0:N:0:O:0	A:212:C:0:G:0:T:0:N:0:O:0	3,44,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	212	20	20	0.023809523809523808	0.0047169811320754715	A:41:C:0:G:1:T:0:N:0:O:0	A:211:C:0:G:1:T:0:N:0:O:0	1,8,0,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	173	322	20	20	0.04046242774566474	0.0	A:7:C:0:G:158:T:0:N:0:O:8	A:0:C:0:G:321:T:1:N:0:O:0	7,36,0,137	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	145	20	20	0.025974025974025976	0.006896551724137931	A:74:C:0:G:2:T:0:N:0:O:1	A:144:C:0:G:1:T:0:N:0:O:0	2,14,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	145	20	20	0.036585365853658534	0.0	A:3:C:0:G:0:T:77:N:0:O:2	A:0:C:0:G:0:T:145:N:0:O:0	3,16,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	145	20	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:145:C:0:G:0:T:0:N:0:O:0	2,38,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	147	20	20	0.020202020202020204	0.0	A:0:C:95:G:0:T:2:N:0:O:2	A:0:C:147:G:0:T:0:N:0:O:0	0,74,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	147	20	20	0.036036036036036036	0.0	A:4:C:0:G:107:T:0:N:0:O:0	A:0:C:0:G:147:T:0:N:0:O:0	3,36,1,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	147	20	20	0.02912621359223301	0.0	A:0:C:100:G:0:T:3:N:0:O:0	A:1:C:146:G:0:T:0:N:0:O:0	0,58,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	165	20	20	0.030303030303030304	0.0	A:0:C:62:G:0:T:2:N:0:O:2	A:0:C:165:G:0:T:0:N:0:O:0	0,45,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	165	20	20	0.020618556701030927	0.0	A:87:C:0:G:0:T:2:N:0:O:8	A:165:C:0:G:0:T:0:N:0:O:0	0,42,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	165	20	20	0.07692307692307693	0.0	A:8:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	0,62,8,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17876	C	A	C	16	ignore low frequency variant	Pass	False	False	True	73	165	20	20	0.0273972602739726	0.006060606060606061	A:2:C:68:G:0:T:0:N:0:O:3	A:1:C:164:G:0:T:0:N:0:O:0	0,31,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	165	20	20	0.021505376344086023	0.0	A:0:C:88:G:0:T:2:N:0:O:3	A:1:C:164:G:0:T:0:N:0:O:0	0,71,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	165	20	20	0.0375	0.0	A:76:C:0:G:3:T:0:N:0:O:1	A:165:C:0:G:0:T:0:N:0:O:0	2,22,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	165	20	20	0.04225352112676056	0.0	A:3:C:0:G:68:T:0:N:0:O:0	A:0:C:0:G:163:T:2:N:0:O:0	3,15,0,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	18248	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	202	20	20	0.020202020202020204	0.0	A:0:C:95:G:0:T:2:N:0:O:2	A:0:C:202:G:0:T:0:N:0:O:0	1,41,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	18317	G	A	G	16	ignore low frequency variant	Pass	False	False	True	186	277	20	20	0.03225806451612903	0.0	A:6:C:0:G:180:T:0:N:0:O:0	A:0:C:0:G:275:T:2:N:0:O:0	6,15,0,171	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	173	20	20	0.03773584905660377	0.0	A:0:C:1:G:4:T:101:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	2,30,2,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	163	213	20	20	0.024539877300613498	0.0	A:1:C:0:G:158:T:4:N:0:O:0	A:0:C:0:G:213:T:0:N:0:O:0	0,100,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	18832	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	171	20	20	0.024390243902439025	0.0	A:3:C:0:G:119:T:0:N:0:O:1	A:0:C:0:G:170:T:1:N:0:O:0	3,58,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	207	20	20	0.03937007874015748	0.0	A:5:C:0:G:121:T:0:N:0:O:1	A:0:C:0:G:206:T:1:N:0:O:0	5,28,0,99	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	12	20	20	0.09722222222222222	0.0	A:0:C:64:G:0:T:7:N:0:O:1	A:0:C:12:G:0:T:0:N:0:O:0	0,58,7,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	19724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	167	20	20	0.024193548387096774	0.0	A:0:C:3:G:0:T:121:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	0,73,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	173	167	20	20	0.017341040462427744	0.0	A:3:C:0:G:0:T:134:N:0:O:36	A:0:C:0:G:0:T:167:N:0:O:0	2,75,1,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	167	20	20	0.027522935779816515	0.0	A:105:C:0:G:0:T:3:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	2,65,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	265	20	20	0.023529411764705882	0.0	A:0:C:81:G:0:T:2:N:0:O:2	A:2:C:263:G:0:T:0:N:0:O:0	0,54,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	20678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	250	20	20	0.02	0.0	A:0:C:144:G:0:T:3:N:0:O:3	A:0:C:250:G:0:T:0:N:0:O:0	0,87,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	189	250	20	20	0.042328042328042326	0.0	A:8:C:0:G:175:T:0:N:0:O:6	A:0:C:0:G:250:T:0:N:0:O:0	8,64,0,125	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	189	20	20	0.052083333333333336	0.0	A:89:C:0:G:5:T:0:N:0:O:2	A:189:C:0:G:0:T:0:N:0:O:0	5,26,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	189	20	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	2,40,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	189	20	20	0.028037383177570093	0.0	A:3:C:0:G:104:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	3,44,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	54	187	20	20	0.037037037037037035	0.0	A:0:C:0:G:2:T:52:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	2,7,0,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	8	20	20	0.04504504504504504	0.0	A:0:C:0:G:100:T:5:N:0:O:6	A:0:C:0:G:8:T:0:N:0:O:0	0,81,5,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	17	20	20	0.023255813953488372	0.0	A:0:C:126:G:0:T:3:N:0:O:0	A:0:C:17:G:0:T:0:N:0:O:0	0,81,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21342	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	17	20	20	0.023076923076923078	0.0	A:0:C:127:G:0:T:3:N:0:O:0	A:0:C:17:G:0:T:0:N:0:O:0	0,83,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	45	20	20	0.03260869565217391	0.0	A:0:C:89:G:0:T:3:N:0:O:0	A:0:C:45:G:0:T:0:N:0:O:0	0,52,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	54	20	20	0.047619047619047616	0.0	A:4:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:54:T:0:N:0:O:0	4,18,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21504	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	64	20	20	0.020618556701030927	0.0	A:2:C:1:G:0:T:83:N:0:O:11	A:0:C:0:G:0:T:64:N:0:O:0	0,74,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	181	20	20	0.01904761904761905	0.0	A:0:C:97:G:0:T:2:N:0:O:6	A:0:C:180:G:0:T:0:N:0:O:1	1,80,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	180	20	20	0.05319148936170213	0.0	A:0:C:84:G:0:T:5:N:0:O:5	A:4:C:176:G:0:T:0:N:0:O:0	3,25,2,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	180	20	20	0.0297029702970297	0.0	A:0:C:91:G:0:T:3:N:0:O:7	A:0:C:180:G:0:T:0:N:0:O:0	0,77,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	180	20	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:180:N:0:O:0	0,73,2,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	21790	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	180	20	20	0.023255813953488372	0.005555555555555556	A:0:C:3:G:0:T:116:N:0:O:10	A:0:C:1:G:0:T:179:N:0:O:0	0,82,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	195	20	20	0.024	0.0	A:3:C:0:G:121:T:0:N:0:O:1	A:0:C:0:G:195:T:0:N:0:O:0	3,64,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	136	195	20	20	0.03676470588235294	0.0	A:0:C:0:G:5:T:130:N:0:O:1	A:0:C:0:G:0:T:195:N:0:O:0	4,43,1,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	297	201	20	20	0.020202020202020204	0.0	A:0:C:6:G:0:T:272:N:0:O:19	A:0:C:0:G:0:T:201:N:0:O:0	0,198,6,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	13	20	20	0.07142857142857142	0.0	A:37:C:0:G:3:T:0:N:0:O:2	A:13:C:0:G:0:T:0:N:0:O:0	0,8,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	260	201	20	20	0.023076923076923078	0.0	A:0:C:0:G:253:T:6:N:0:O:1	A:0:C:0:G:201:T:0:N:0:O:0	0,166,6,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	148	20	20	0.028985507246376812	0.0	A:0:C:2:G:0:T:67:N:0:O:0	A:0:C:0:G:0:T:148:N:0:O:0	1,65,1,4	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	116	148	20	20	0.9224137931034483	0.9932432432432432	A:0:C:0:G:107:T:0:N:0:O:9	A:0:C:0:G:147:T:1:N:0:O:0	54,63,53,53	559.237	1526.2	yes	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	23513	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	182	20	20	0.024793388429752067	0.0	A:118:C:0:G:0:T:3:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	0,67,3,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23514	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	182	20	20	0.022900763358778626	0.0	A:0:C:3:G:0:T:126:N:0:O:2	A:0:C:0:G:0:T:182:N:0:O:0	0,69,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	176	20	20	0.05128205128205128	0.0	A:4:C:0:G:69:T:0:N:0:O:5	A:0:C:0:G:173:T:1:N:0:O:2	4,16,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	182	20	20	0.04807692307692308	0.0	A:0:C:98:G:0:T:5:N:0:O:1	A:0:C:182:G:0:T:0:N:0:O:0	0,71,5,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	182	20	20	0.023529411764705882	0.005494505494505495	A:80:C:0:G:2:T:0:N:0:O:3	A:181:C:0:G:1:T:0:N:0:O:0	2,37,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	179	20	20	0.022727272727272728	0.0	A:85:C:0:G:2:T:0:N:0:O:1	A:179:C:0:G:0:T:0:N:0:O:0	2,19,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	179	20	20	0.08139534883720931	0.0	A:0:C:78:G:0:T:7:N:0:O:1	A:0:C:178:G:1:T:0:N:0:O:0	0,73,7,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	179	20	20	0.038834951456310676	0.0	A:1:C:88:G:0:T:4:N:0:O:10	A:1:C:178:G:0:T:0:N:0:O:0	1,62,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23901	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	179	20	20	0.023529411764705882	0.0	A:83:C:0:G:2:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	1,31,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23902	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	179	20	20	0.02631578947368421	0.0	A:74:C:0:G:0:T:2:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	1,31,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	179	20	20	0.03424657534246575	0.0	A:141:C:0:G:0:T:5:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	4,77,1,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	70	179	20	20	0.07142857142857142	0.0	A:5:C:0:G:0:T:65:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	4,18,1,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	179	20	20	0.022727272727272728	0.0	A:2:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:179:T:0:N:0:O:0	2,54,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	179	20	20	0.02531645569620253	0.0	A:0:C:77:G:0:T:2:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	0,70,2,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24242	T	A	T	16	ignore low frequency variant	Pass	False	False	True	53	118	20	20	0.03773584905660377	0.0	A:2:C:0:G:0:T:51:N:0:O:0	A:0:C:0:G:0:T:118:N:0:O:0	0,42,2,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	118	20	20	0.046875	0.0	A:0:C:56:G:0:T:3:N:0:O:5	A:0:C:118:G:0:T:0:N:0:O:0	0,57,3,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24278	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	118	20	20	0.027777777777777776	0.0	A:0:C:0:G:2:T:70:N:0:O:0	A:0:C:0:G:0:T:118:N:0:O:0	1,9,1,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	118	20	20	0.028846153846153848	0.0	A:101:C:0:G:3:T:0:N:0:O:0	A:118:C:0:G:0:T:0:N:0:O:0	3,39,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	161	20	20	0.030303030303030304	0.0	A:4:C:125:G:0:T:0:N:0:O:3	A:0:C:161:G:0:T:0:N:0:O:0	4,63,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	170	161	20	20	0.023529411764705882	0.0	A:152:C:1:G:0:T:4:N:0:O:13	A:161:C:0:G:0:T:0:N:0:O:0	4,110,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24492	T	A	T	16	ignore low frequency variant	Pass	False	False	True	181	161	20	20	0.022099447513812154	0.0	A:4:C:0:G:0:T:163:N:0:O:14	A:0:C:0:G:0:T:161:N:0:O:0	3,80,1,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24536	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	161	20	20	0.01818181818181818	0.0	A:0:C:147:G:0:T:3:N:0:O:15	A:0:C:161:G:0:T:0:N:0:O:0	1,106,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	161	20	20	0.03529411764705882	0.0	A:0:C:78:G:0:T:3:N:0:O:4	A:0:C:161:G:0:T:0:N:0:O:0	1,80,2,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	161	20	20	0.023809523809523808	0.0	A:0:C:77:G:0:T:2:N:0:O:5	A:0:C:161:G:0:T:0:N:0:O:0	0,78,2,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	169	20	20	0.030612244897959183	0.0	A:95:C:0:G:3:T:0:N:0:O:0	A:169:C:0:G:0:T:0:N:0:O:0	3,32,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	169	20	20	0.053763440860215055	0.0	A:5:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:169:T:0:N:0:O:0	0,62,5,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	169	20	20	0.06451612903225806	0.0	A:0:C:0:G:6:T:86:N:0:O:1	A:0:C:0:G:0:T:169:N:0:O:0	0,62,6,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	169	20	20	0.022222222222222223	0.0	A:1:C:2:G:0:T:86:N:0:O:1	A:0:C:0:G:0:T:169:N:0:O:0	0,56,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	29	167	20	20	0.034482758620689655	0.0	A:0:C:1:G:0:T:28:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	0,21,1,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	145	20	20	0.061855670103092786	0.0	A:91:C:0:G:0:T:6:N:0:O:0	A:145:C:0:G:0:T:0:N:0:O:0	5,47,1,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	145	20	20	0.022988505747126436	0.0	A:0:C:79:G:1:T:2:N:0:O:5	A:0:C:145:G:0:T:0:N:0:O:0	0,73,2,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	145	20	20	0.030927835051546393	0.0	A:0:C:0:G:3:T:92:N:0:O:2	A:0:C:0:G:0:T:145:N:0:O:0	3,46,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	111	145	20	20	1.0	1.0	A:0:C:0:G:0:T:111:N:0:O:0	A:0:C:0:G:0:T:145:N:0:O:0	49,49,62,62	210.0	1789.6	yes	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	145	20	20	0.02654867256637168	0.0	A:3:C:102:G:0:T:0:N:0:O:8	A:0:C:145:G:0:T:0:N:0:O:0	3,62,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	174	20	20	0.022727272727272728	0.0	A:0:C:80:G:0:T:2:N:0:O:6	A:0:C:174:G:0:T:0:N:0:O:0	1,45,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	174	20	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:1:C:173:G:0:T:0:N:0:O:0	0,53,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	127	174	20	20	0.047244094488188976	0.0	A:6:C:80:G:0:T:0:N:0:O:41	A:0:C:173:G:0:T:1:N:0:O:0	6,44,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	63	174	20	20	0.09523809523809523	0.0	A:56:C:6:G:0:T:0:N:0:O:1	A:174:C:0:G:0:T:0:N:0:O:0	2,37,4,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	174	20	20	0.034482758620689655	0.0	A:0:C:84:G:0:T:3:N:0:O:0	A:1:C:173:G:0:T:0:N:0:O:0	0,52,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25854	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	174	20	20	0.020833333333333332	0.0	A:0:C:89:G:0:T:2:N:0:O:5	A:0:C:174:G:0:T:0:N:0:O:0	0,41,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	174	20	20	0.02830188679245283	0.0	A:98:C:0:G:3:T:0:N:0:O:5	A:174:C:0:G:0:T:0:N:0:O:0	3,35,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	174	20	20	0.05813953488372093	0.0	A:77:C:0:G:5:T:0:N:0:O:4	A:174:C:0:G:0:T:0:N:0:O:0	5,19,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	174	20	20	0.04819277108433735	0.0	A:0:C:77:G:0:T:4:N:0:O:2	A:0:C:174:G:0:T:0:N:0:O:0	1,43,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	25901	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	174	20	20	0.021505376344086023	0.0	A:0:C:86:G:0:T:2:N:0:O:5	A:1:C:173:G:0:T:0:N:0:O:0	0,53,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	172	320	20	20	0.029069767441860465	0.0	A:166:C:0:G:5:T:0:N:0:O:1	A:320:C:0:G:0:T:0:N:0:O:0	0,127,5,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	25990	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	176	20	20	0.0234375	0.022727272727272728	A:0:C:3:G:0:T:125:N:0:O:0	A:0:C:4:G:0:T:172:N:0:O:0	0,63,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26061	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	319	20	20	0.02531645569620253	0.0	A:0:C:2:G:0:T:74:N:0:O:3	A:0:C:0:G:0:T:319:N:0:O:0	0,43,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	167	20	20	0.020833333333333332	0.0	A:0:C:1:G:0:T:47:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	0,46,1,2	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	167	20	20	0.022222222222222223	0.0	A:0:C:88:G:0:T:2:N:0:O:0	A:2:C:165:G:0:T:0:N:0:O:0	0,61,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	167	20	20	0.022727272727272728	0.005988023952095809	A:2:C:0:G:85:T:0:N:0:O:1	A:1:C:0:G:163:T:3:N:0:O:0	2,38,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	167	20	20	0.020202020202020204	0.0	A:95:C:0:G:2:T:0:N:0:O:2	A:167:C:0:G:0:T:0:N:0:O:0	2,31,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	167	20	20	0.03	0.0	A:3:C:0:G:95:T:0:N:0:O:2	A:0:C:0:G:163:T:4:N:0:O:0	3,31,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	242	257	20	20	0.0371900826446281	0.0	A:9:C:0:G:0:T:231:N:0:O:2	A:0:C:0:G:0:T:257:N:0:O:0	9,109,0,133	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	264	20	20	0.03076923076923077	0.0	A:0:C:188:G:0:T:6:N:0:O:1	A:1:C:263:G:0:T:0:N:0:O:0	0,152,6,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	230	268	20	20	0.034782608695652174	0.0	A:0:C:8:G:0:T:221:N:0:O:1	A:0:C:0:G:0:T:268:N:0:O:0	0,160,8,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	123	20	20	0.09302325581395349	0.0	A:8:C:0:G:78:T:0:N:0:O:0	A:0:C:0:G:123:T:0:N:0:O:0	8,11,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26731	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	123	20	20	0.02857142857142857	0.0	A:0:C:4:G:0:T:136:N:0:O:0	A:0:C:0:G:0:T:123:N:0:O:0	0,84,4,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	123	20	20	0.03225806451612903	0.0	A:0:C:89:G:0:T:3:N:0:O:1	A:0:C:123:G:0:T:0:N:0:O:0	0,69,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	182	20	20	0.0684931506849315	0.0	A:5:C:0:G:68:T:0:N:0:O:0	A:0:C:0:G:181:T:1:N:0:O:0	5,16,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	182	20	20	0.047058823529411764	0.0	A:0:C:80:G:0:T:4:N:0:O:1	A:1:C:181:G:0:T:0:N:0:O:0	0,62,4,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	181	20	20	0.020202020202020204	0.0	A:0:C:95:G:0:T:2:N:0:O:2	A:0:C:181:G:0:T:0:N:0:O:0	0,68,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	27514	G	C	G	16	ignore low frequency variant	Pass	False	False	True	103	32	20	20	0.02912621359223301	0.0	A:0:C:3:G:100:T:0:N:0:O:0	A:0:C:0:G:32:T:0:N:0:O:0	3,36,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	27683	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	52	20	20	0.02608695652173913	0.0	A:109:C:0:G:0:T:3:N:0:O:3	A:52:C:0:G:0:T:0:N:0:O:0	2,47,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	27684	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	52	20	20	0.023529411764705882	0.0	A:0:C:80:G:0:T:2:N:0:O:3	A:0:C:52:G:0:T:0:N:0:O:0	1,53,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	39	20	20	0.023809523809523808	0.0	A:2:C:0:G:78:T:0:N:0:O:4	A:0:C:0:G:39:T:0:N:0:O:0	1,8,1,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	202	20	20	0.02857142857142857	0.0	A:3:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:200:T:2:N:0:O:0	2,34,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	28302	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	150	20	20	0.02197802197802198	0.0	A:2:C:0:G:85:T:0:N:0:O:4	A:0:C:0:G:149:T:1:N:0:O:0	0,32,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	28863	C	G	C	16	ignore low frequency variant	Pass	False	False	True	110	150	20	20	0.01818181818181818	0.0	A:1:C:91:G:2:T:0:N:0:O:16	A:4:C:146:G:0:T:0:N:0:O:0	0,83,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	150	20	20	0.03488372093023256	0.0	A:3:C:0:G:82:T:0:N:0:O:1	A:0:C:0:G:150:T:0:N:0:O:0	3,13,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	150	20	20	0.04878048780487805	0.0	A:0:C:4:G:0:T:78:N:0:O:0	A:0:C:0:G:0:T:150:N:0:O:0	0,49,4,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	176	20	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:90:N:0:O:1	A:0:C:0:G:0:T:176:N:0:O:0	0,60,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	29167	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	176	20	20	0.02459016393442623	0.0	A:0:C:116:G:0:T:3:N:0:O:3	A:0:C:176:G:0:T:0:N:0:O:0	0,67,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	52	20	20	0.07547169811320754	0.019230769230769232	A:48:C:0:G:4:T:0:N:0:O:1	A:51:C:0:G:1:T:0:N:0:O:0	2,6,2,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	52	20	20	0.0196078431372549	0.0	A:97:C:0:G:2:T:0:N:0:O:3	A:52:C:0:G:0:T:0:N:0:O:0	2,18,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	29679	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	20	20	20	0.02586206896551724	0.0	A:0:C:109:G:0:T:3:N:0:O:4	A:0:C:20:G:0:T:0:N:0:O:0	1,78,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00057	artic-pipeline	NB02	MN908947.3	6348	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00057	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	152	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	55	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,7,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	56	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:40:T:0:N:0:O:0	.	1,7,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.09090909090909091	.	A:0:C:20:G:0:T:2:N:0:O:0	.	0,4,2,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	94	G	A	G	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:34:T:0:N:0:O:0	.	0,6,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	115	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,7,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	136	A	C	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:1:G:0:T:0:N:0:O:0	.	0,5,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:0:T:24:N:0:O:1	.	0,4,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	0,5,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	150	T	A	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:0:T:36:N:0:O:0	.	0,5,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	151	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,4,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:30:N:0:O:0	.	0,4,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	154	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:0:G:1:T:32:N:0:O:2	.	0,5,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	168	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	0,5,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	176	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:26:G:0:T:1:N:0:O:0	.	0,5,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:31:N:0:O:1	.	0,5,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	237	G	T	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:0:G:35:T:1:N:0:O:0	.	0,8,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	238	T	G	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:1:T:32:N:0:O:0	.	0,9,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	248	G	T	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:25:T:1:N:0:O:1	.	0,9,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	249	T	A	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:0:T:27:N:0:O:1	.	0,10,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	250	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:22:T:0:N:0:O:1	.	0,7,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	251	T	A	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:0:T:27:N:0:O:0	.	0,9,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	252	G	A	G	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:1:C:0:G:31:T:0:N:0:O:0	.	0,9,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	284	G	T	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:0:G:32:T:1:N:0:O:0	.	0,5,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	288	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:26:N:0:O:1	.	0,6,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	303	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,5,0,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:4:G:0:T:92:N:0:O:6	.	3,21,1,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	457	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:93:N:0:O:7	.	2,24,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:128:C:0:G:3:T:0:N:0:O:1	.	3,39,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	655	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:128:C:0:G:3:T:0:N:0:O:2	.	2,36,1,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	0,66,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,52,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	859	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:3:T:95:N:0:O:7	.	0,66,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:79:T:0:N:0:O:22	.	0,15,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1205	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:107:G:0:T:3:N:0:O:6	.	0,65,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	261	.	20	.	0.022988505747126436	.	A:6:C:0:G:255:T:0:N:0:O:0	.	5,129,1,132	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.029585798816568046	.	A:0:C:162:G:5:T:0:N:0:O:2	.	5,69,0,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.033783783783783786	.	A:0:C:140:G:0:T:5:N:0:O:3	.	0,83,5,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	2,14,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:3:T:0:N:0:O:1	.	3,37,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.06481481481481481	.	A:0:C:7:G:0:T:97:N:0:O:4	.	0,60,7,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	2028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:0:C:167:G:0:T:4:N:0:O:1	.	0,94,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	2029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:0:C:4:G:0:T:146:N:0:O:2	.	0,73,4,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.0873015873015873	.	A:11:C:0:G:112:T:1:N:0:O:2	.	11,36,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	2225	A	G	A	16	ignore low frequency variant	Pass	False	False	True	261	.	20	.	0.03065134099616858	.	A:252:C:0:G:8:T:0:N:0:O:1	.	8,99,0,162	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:4:C:0:G:142:T:0:N:0:O:4	.	3,47,1,103	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	2,16,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:117:N:0:O:0	.	0,66,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	3413	A	C	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:34:C:1:G:0:T:0:N:0:O:3	.	1,19,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:81:G:0:T:3:N:0:O:0	.	0,67,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:74:G:0:T:2:N:0:O:0	.	0,69,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	4010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	2,62,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.03225806451612903	.	A:7:C:0:G:198:T:0:N:0:O:12	.	7,79,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	237	.	20	.	0.06751054852320675	.	A:1:C:0:G:209:T:16:N:0:O:11	.	0,181,16,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	264	.	20	.	0.030303030303030304	.	A:8:C:0:G:254:T:1:N:0:O:1	.	0,151,8,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.02553191489361702	.	A:1:C:210:G:0:T:6:N:0:O:18	.	0,148,6,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.01910828025477707	.	A:145:C:0:G:0:T:3:N:0:O:9	.	0,89,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,73,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	4902	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:120:N:0:O:0	.	0,67,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:110:N:0:O:2	.	0,65,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	5042	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:126:G:0:T:3:N:0:O:0	.	1,73,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,47,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:103:G:0:T:4:N:0:O:2	.	0,64,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:67:G:0:T:3:N:0:O:0	.	0,63,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:3:G:0:T:81:N:0:O:1	.	0,56,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:91:T:0:N:0:O:3	.	2,20,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:0:C:78:G:0:T:7:N:0:O:0	.	0,65,7,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:2:G:0:T:93:N:0:O:16	.	1,53,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	6195	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:98:G:0:T:2:N:0:O:5	.	1,61,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:84:G:1:T:4:N:0:O:2	.	0,64,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:58:C:0:G:2:T:0:N:0:O:0	.	2,38,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:61:T:0:N:0:O:3	.	2,31,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:98:N:0:O:3	.	0,68,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:129:C:0:G:3:T:0:N:0:O:2	.	3,62,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	0,70,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:104:N:0:O:2	.	0,62,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.033816425120772944	.	A:195:C:0:G:7:T:0:N:0:O:5	.	7,90,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.030456852791878174	.	A:0:C:186:G:0:T:6:N:0:O:5	.	0,129,6,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:0:G:127:T:3:N:0:O:1	.	0,63,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:80:C:0:G:0:T:4:N:0:O:1	.	0,64,4,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	7034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:92:N:0:O:1	.	0,67,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	7251	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:92:N:0:O:7	.	0,36,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	7524	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:1:G:94:T:0:N:0:O:1	.	2,23,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	7701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	1,26,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:0:T:3:N:0:O:0	.	3,52,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:0:G:2:T:0:N:0:O:3	.	2,32,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	8142	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:94:N:0:O:2	.	0,62,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	8143	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:116:C:0:G:3:T:0:N:0:O:1	.	1,60,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	8470	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,27,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	128	.	20	.	1.0	.	A:0:C:0:G:0:T:128:N:0:O:0	.	65,65,63,63	276.227	1191.5	.	.	.	.	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	8887	A	T	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:74:C:0:G:0:T:2:N:0:O:2	.	2,20,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:67:G:0:T:2:N:0:O:1	.	2,11,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:3:C:0:G:64:T:0:N:0:O:1	.	3,5,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	8890	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:63:G:0:T:2:N:0:O:0	.	1,11,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:5:C:0:G:0:T:89:N:0:O:4	.	4,45,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:72:G:0:T:2:N:0:O:1	.	2,28,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:71:G:0:T:2:N:0:O:2	.	0,26,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	9598	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:84:G:0:T:2:N:0:O:9	.	2,48,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:77:G:0:T:2:N:0:O:33	.	1,99,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	1,42,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	9714	C	A	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:76:G:0:T:1:N:0:O:5	.	2,61,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:75:T:0:N:0:O:1	.	4,17,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10321	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:0:T:92:N:0:O:7	.	2,52,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:119:C:0:G:4:T:0:N:0:O:0	.	4,57,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:121:C:0:G:3:T:0:N:0:O:13	.	2,48,1,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10557	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:120:G:0:T:3:N:0:O:0	.	0,72,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.058823529411764705	.	A:111:C:0:G:7:T:0:N:0:O:1	.	7,41,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:0:G:132:T:3:N:0:O:0	.	3,69,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.07766990291262135	.	A:0:C:95:G:0:T:8:N:0:O:0	.	0,64,8,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:91:G:0:T:0:N:0:O:6	.	3,48,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	11095	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.017241379310344827	.	A:0:C:84:G:0:T:2:N:0:O:30	.	1,86,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:96:N:0:O:0	.	2,40,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	11486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:115:C:0:G:3:T:0:N:0:O:2	.	3,53,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.06796116504854369	.	A:0:C:94:G:0:T:7:N:0:O:2	.	1,66,6,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	11831	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:123:T:0:N:0:O:2	.	3,69,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	12110	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:96:C:0:G:3:T:0:N:0:O:0	.	3,46,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:86:G:0:T:3:N:0:O:1	.	3,50,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:78:T:0:N:0:O:15	.	0,77,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	12339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:116:N:0:O:0	.	0,66,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:0:G:84:T:0:N:0:O:4	.	4,26,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:72:G:0:T:2:N:0:O:2	.	0,59,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:0:T:133:N:0:O:9	.	3,62,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:131:C:0:G:3:T:0:N:0:O:2	.	3,42,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:0:C:107:G:0:T:5:N:0:O:0	.	0,70,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.09876543209876543	.	A:0:C:72:G:0:T:8:N:0:O:1	.	0,67,8,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:2:C:0:G:92:T:0:N:0:O:13	.	2,46,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:72:G:0:T:2:N:0:O:0	.	0,51,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:0:G:3:T:0:N:0:O:1	.	3,42,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:88:T:0:N:0:O:3	.	3,29,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13715	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:100:C:0:G:3:T:0:N:0:O:2	.	2,44,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:81:T:0:N:0:O:0	.	3,28,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:38:C:0:G:1:T:0:N:0:O:3	.	0,3,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	2,31,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:120:C:0:G:3:T:0:N:0:O:0	.	3,59,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:97:C:0:G:2:T:0:N:0:O:5	.	2,39,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:121:G:0:T:3:N:0:O:1	.	0,66,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,53,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14419	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:131:T:3:N:0:O:0	.	0,72,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,68,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,62,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,50,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	14880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:0:G:3:T:121:N:0:O:2	.	0,65,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.07692307692307693	.	A:8:C:0:G:93:T:0:N:0:O:3	.	8,34,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,34,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	15430	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:0:G:2:T:0:N:0:O:1	.	2,29,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	15489	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,57,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:86:T:2:N:0:O:0	.	0,49,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.05454545454545454	.	A:0:C:52:G:0:T:3:N:0:O:0	.	0,29,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:101:G:0:T:4:N:0:O:1	.	0,68,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,60,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:3:T:0:N:0:O:0	.	2,43,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	16424	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,49,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:91:G:0:T:3:N:0:O:6	.	0,64,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:100:N:0:O:0	.	0,71,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	16999	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:105:C:0:G:4:T:0:N:0:O:0	.	4,41,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.03125	.	A:6:C:0:G:179:T:0:N:0:O:7	.	6,47,0,145	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17431	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,38,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17432	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:96:N:0:O:0	.	2,36,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,40,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:7:C:0:G:94:T:0:N:0:O:0	.	7,36,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,53,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:83:G:0:T:3:N:0:O:2	.	0,49,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17747	C	T	T	17	accept high frequency variant	Pass	False	True	True	104	.	20	.	1.0	.	A:0:C:0:G:0:T:104:N:0:O:0	.	51,51,53,53	350.0	1162.7	.	.	.	.	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	17753	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:0:G:119:T:3:N:0:O:3	.	0,65,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	17858	A	G	G	17	accept high frequency variant	Pass	False	True	True	125	.	20	.	0.984	.	A:2:C:0:G:123:T:0:N:0:O:0	.	56,57,67,68	199.694	1035.4	.	.	.	.	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	18060	C	T	T	12	misc mixed variant	Check	False	True	True	103	.	20	.	0.7281553398058253	.	A:0:C:0:G:0:T:75:N:0:O:28	.	48,76,27,27	111.781	1055.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.04065040650406504	.	A:0:C:0:G:5:T:117:N:0:O:1	.	5,52,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:112:G:0:T:3:N:0:O:5	.	3,36,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.030120481927710843	.	A:0:C:160:G:0:T:5:N:0:O:1	.	0,106,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:96:N:0:O:0	.	2,43,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:4:C:0:G:145:T:0:N:0:O:3	.	4,37,0,115	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	19373	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	0,72,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.14084507042253522	.	A:0:C:60:G:0:T:10:N:0:O:1	.	0,55,10,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:96:N:0:O:3	.	1,66,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:0:G:2:T:77:N:0:O:1	.	0,39,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	0,54,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	20411	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:122:C:0:G:3:T:0:N:0:O:0	.	3,54,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	3,32,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,39,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:0:G:80:T:4:N:0:O:8	.	0,67,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	1,65,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:109:G:0:T:5:N:0:O:0	.	0,69,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21433	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	3,51,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	2,9,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.016666666666666666	.	A:0:C:0:G:142:T:3:N:0:O:35	.	3,108,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:101:N:0:O:0	.	3,43,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21646	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:117:G:0:T:3:N:0:O:1	.	1,55,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:106:T:0:N:0:O:5	.	3,46,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21875	A	T	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.014388489208633094	.	A:98:C:0:G:0:T:2:N:0:O:39	.	0,102,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:84:N:0:O:1	.	2,33,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.020942408376963352	.	A:186:C:0:G:4:T:0:N:0:O:1	.	4,70,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	22313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:0:C:185:G:0:T:4:N:0:O:0	.	0,108,4,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	22370	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:73:G:0:T:2:N:0:O:2	.	0,39,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	22447	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,34,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	22509	C	G	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:47:G:1:T:0:N:0:O:0	.	0,33,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:145:G:0:T:3:N:0:O:1	.	0,79,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:0:C:0:G:5:T:161:N:0:O:40	.	0,113,5,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23088	G	A	G	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:3:C:0:G:136:T:0:N:0:O:12	.	3,47,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23317	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:2:T:98:N:0:O:3	.	0,64,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23364	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	1,57,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23451	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:93:G:0:T:2:N:0:O:13	.	1,40,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23452	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:76:N:0:O:11	.	1,67,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.058823529411764705	.	A:6:C:0:G:87:T:0:N:0:O:9	.	6,27,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07894736842105263	.	A:0:C:105:G:0:T:9:N:0:O:0	.	0,93,9,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	1,91,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:2:C:107:G:0:T:3:N:0:O:2	.	3,58,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.03067484662576687	.	A:157:C:0:G:0:T:5:N:0:O:1	.	5,92,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.08450704225352113	.	A:6:C:0:G:0:T:65:N:0:O:0	.	6,14,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:2:G:0:T:64:N:0:O:1	.	1,13,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:77:T:0:N:0:O:0	.	5,20,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:90:T:0:N:0:O:3	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:74:G:0:T:2:N:0:O:6	.	0,74,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,50,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:3:C:94:G:0:T:5:N:0:O:2	.	0,54,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:127:C:0:G:0:T:3:N:0:O:7	.	3,94,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:96:C:4:G:0:T:0:N:0:O:0	.	4,55,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24694	A	T	T	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	0.9838709677419355	.	A:2:C:0:G:0:T:122:N:0:O:0	.	62,64,60,60	279.237	1987.5	.	.	.	.	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.037037037037037035	.	A:0:C:130:G:0:T:5:N:0:O:0	.	0,88,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,78,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:0:G:115:T:4:N:0:O:1	.	4,55,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:6:C:0:G:91:T:0:N:0:O:0	.	0,61,6,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.08163265306122448	.	A:0:C:0:G:8:T:89:N:0:O:1	.	0,60,8,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	43	.	20	.	0.06976744186046512	.	A:0:C:3:G:0:T:39:N:0:O:1	.	3,33,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	0,0,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	25564	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:99:C:0:G:3:T:0:N:0:O:2	.	2,36,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.06779661016949153	.	A:54:C:4:G:0:T:0:N:0:O:1	.	1,34,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:96:G:0:T:4:N:0:O:0	.	1,54,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:0:T:90:N:0:O:0	.	2,38,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:79:C:0:G:4:T:0:N:0:O:2	.	4,27,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	25885	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:0:T:96:N:0:O:1	.	2,52,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:0:C:89:G:0:T:6:N:0:O:6	.	2,53,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	26046	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,52,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26047	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:0:G:3:T:96:N:0:O:0	.	3,48,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,36,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:85:G:0:T:4:N:0:O:21	.	0,95,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	26533	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	2,31,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:86:T:0:N:0:O:0	.	5,21,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.041176470588235294	.	A:0:C:162:G:0:T:7:N:0:O:1	.	0,140,7,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:85:G:0:T:2:N:0:O:2	.	0,44,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,57,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:0:T:2:N:0:O:1	.	2,24,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.09411764705882353	.	A:8:C:0:G:77:T:0:N:0:O:0	.	8,14,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:79:G:0:T:5:N:0:O:0	.	0,62,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:94:C:0:G:3:T:0:N:0:O:0	.	3,43,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:0:C:74:G:0:T:4:N:0:O:0	.	0,66,4,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:1:N:0:O:0	.	2,28,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.024509803921568627	.	A:198:C:0:G:0:T:5:N:0:O:1	.	3,81,2,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	27696	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	2,40,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28048	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:89:T:0:N:0:O:3	.	2,36,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	253	.	20	.	0.9960474308300395	.	A:0:C:252:G:0:T:0:N:0:O:1	.	124,125,128,128	412.247	1432.3	.	.	.	.	.	.	.	.	.
MDHP-00058	artic-pipeline	NB03	MN908947.3	28178	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,39,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:1:T:48:N:0:O:1	.	1,29,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28247	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:95:C:0:G:0:T:3:N:0:O:2	.	2,55,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:1:C:72:G:0:T:2:N:0:O:4	.	1,54,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:70:G:1:T:2:N:0:O:1	.	0,49,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:87:G:0:T:0:N:0:O:7	.	3,62,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:88:C:0:G:0:T:2:N:0:O:4	.	2,26,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.0375	.	A:0:C:149:G:0:T:6:N:0:O:5	.	0,118,6,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28651	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:1:C:108:G:0:T:3:N:0:O:6	.	0,65,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:5:C:0:G:96:T:0:N:0:O:1	.	5,28,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:69:T:0:N:0:O:1	.	2,6,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29111	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:92:G:0:T:1:N:0:O:1	.	4,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:1:C:2:G:72:T:0:N:0:O:1	.	2,35,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:102:T:0:N:0:O:0	.	4,17,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29421	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:112:G:0:T:3:N:0:O:0	.	0,72,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29697	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:122:C:1:G:3:T:0:N:0:O:1	.	3,65,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:4:G:86:T:0:N:0:O:4	.	4,33,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00058	artic-pipeline	NB03	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	14	184	20	20	1.0	1.0	A:0:C:0:G:0:T:14:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	1,1,13,13	69.237	1354.9	yes	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	447	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	147	20	20	0.023622047244094488	0.0	A:0:C:1:G:3:T:121:N:0:O:2	A:0:C:0:G:0:T:147:N:0:O:0	0,58,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	148	20	20	0.024096385542168676	0.0	A:0:C:2:G:0:T:75:N:0:O:6	A:0:C:0:G:0:T:148:N:0:O:0	2,21,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	148	20	20	0.024390243902439025	0.0	A:119:C:0:G:3:T:0:N:0:O:1	A:148:C:0:G:0:T:0:N:0:O:0	3,39,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	665	C	T	C	16	ignore low frequency variant	Pass	False	False	True	237	291	20	20	0.02109704641350211	0.0	A:0:C:231:G:0:T:5:N:0:O:1	A:0:C:291:G:0:T:0:N:0:O:0	0,135,5,102	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	203	294	20	20	0.024630541871921183	0.0	A:5:C:0:G:196:T:0:N:0:O:2	A:0:C:0:G:294:T:0:N:0:O:0	5,67,0,136	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	896	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	167	20	20	0.023809523809523808	0.0	A:2:C:0:G:78:T:0:N:0:O:4	A:0:C:0:G:167:T:0:N:0:O:0	2,24,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	195	20	20	0.024096385542168676	0.0	A:2:C:0:G:79:T:0:N:0:O:2	A:0:C:0:G:194:T:1:N:0:O:0	2,13,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	195	20	20	0.9927536231884058	1.0	A:0:C:1:G:0:T:137:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	71,71,66,67	210.0	1365.8	yes	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	1144	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	195	20	20	0.03125	0.0	A:0:C:0:G:3:T:83:N:0:O:10	A:0:C:0:G:0:T:195:N:0:O:0	0,35,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1252	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	194	20	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	0,50,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	195	20	20	0.03488372093023256	0.0	A:3:C:0:G:82:T:0:N:0:O:1	A:0:C:0:G:195:T:0:N:0:O:0	3,24,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	56	20	20	0.022222222222222223	0.0	A:2:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:56:T:0:N:0:O:0	2,21,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	1474	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	109	20	20	0.024793388429752067	0.0	A:0:C:3:G:0:T:114:N:0:O:4	A:0:C:0:G:0:T:109:N:0:O:0	0,73,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	83	20	20	0.028846153846153848	0.0	A:3:C:0:G:100:T:0:N:0:O:1	A:0:C:0:G:82:T:1:N:0:O:0	1,54,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	85	61	20	20	0.023529411764705882	0.0	A:0:C:79:G:2:T:0:N:0:O:4	A:0:C:61:G:0:T:0:N:0:O:0	2,32,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	211	20	20	0.029411764705882353	0.0	A:30:C:0:G:1:T:0:N:0:O:3	A:211:C:0:G:0:T:0:N:0:O:0	0,2,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	134	20	20	0.015625	0.0	A:2:C:0:G:98:T:0:N:0:O:28	A:0:C:0:G:134:T:0:N:0:O:0	2,56,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	134	20	20	0.17857142857142858	0.0	A:20:C:0:G:88:T:1:N:0:O:3	A:0:C:0:G:133:T:1:N:0:O:0	20,43,0,69	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	121	89	20	20	0.03305785123966942	0.0	A:116:C:4:G:0:T:0:N:0:O:1	A:89:C:0:G:0:T:0:N:0:O:0	4,58,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	57	20	20	0.03614457831325301	0.0	A:3:C:0:G:78:T:0:N:0:O:2	A:0:C:0:G:57:T:0:N:0:O:0	0,32,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	161	183	20	20	0.024844720496894408	0.0	A:156:C:4:G:0:T:0:N:0:O:1	A:183:C:0:G:0:T:0:N:0:O:0	4,76,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	2928	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	92	20	20	0.0423728813559322	0.0	A:111:C:0:G:5:T:0:N:0:O:2	A:92:C:0:G:0:T:0:N:0:O:0	5,62,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	122	104	20	20	0.6557377049180327	1.0	A:0:C:0:G:0:T:80:N:0:O:42	A:0:C:0:G:0:T:104:N:0:O:0	42,84,38,38	55.257	1510.4	yes	.	.	.	mixed position	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	85	20	20	0.0380952380952381	0.0	A:0:C:0:G:94:T:4:N:0:O:7	A:0:C:0:G:85:T:0:N:0:O:0	0,70,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	185	20	20	0.028846153846153848	0.0	A:0:C:3:G:0:T:101:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	0,64,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	185	20	20	0.028846153846153848	0.0	A:101:C:0:G:3:T:0:N:0:O:0	A:185:C:0:G:0:T:0:N:0:O:0	0,63,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	63	185	20	20	0.031746031746031744	0.0	A:2:C:0:G:59:T:0:N:0:O:2	A:0:C:0:G:185:T:0:N:0:O:0	2,22,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	52	184	20	20	0.057692307692307696	0.0	A:45:C:0:G:0:T:3:N:0:O:4	A:184:C:0:G:0:T:0:N:0:O:0	3,29,0,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	185	20	20	0.020202020202020204	0.0	A:2:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:185:T:0:N:0:O:0	2,36,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3579	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	231	20	20	0.019230769230769232	0.0	A:2:C:0:G:0:T:98:N:0:O:4	A:0:C:0:G:0:T:231:N:0:O:0	1,54,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	232	20	20	0.021052631578947368	0.0	A:2:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:232:T:0:N:0:O:0	2,30,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	165	20	20	0.021052631578947368	0.0	A:0:C:0:G:2:T:79:N:0:O:14	A:0:C:0:G:0:T:165:N:0:O:0	0,49,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	166	20	20	0.03333333333333333	0.0	A:3:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:166:T:0:N:0:O:0	0,49,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	328	20	20	0.02727272727272727	0.0	A:6:C:0:G:199:T:0:N:0:O:15	A:0:C:0:G:325:T:2:N:0:O:1	6,72,0,148	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	219	332	20	20	0.0319634703196347	0.0030120481927710845	A:0:C:0:G:207:T:7:N:0:O:5	A:1:C:0:G:330:T:1:N:0:O:0	1,165,6,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	196	20	20	0.036231884057971016	0.0	A:122:C:0:G:0:T:5:N:0:O:11	A:195:C:0:G:0:T:0:N:0:O:1	0,79,5,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	4504	G	T	T	13	new position validated by illumina	Pass	False	True	True	170	195	20	20	0.9058823529411765	0.9487179487179487	A:0:C:0:G:15:T:154:N:0:O:1	A:0:C:0:G:10:T:185:N:0:O:0	88,93,66,77	186.495	1967.9	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	184	20	20	0.0449438202247191	0.0	A:0:C:85:G:0:T:4:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:0	0,61,4,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	195	20	20	0.046875	0.0	A:1:C:60:G:0:T:3:N:0:O:0	A:0:C:195:G:0:T:0:N:0:O:0	0,56,3,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	5869	C	T	T	17	accept high frequency variant	Pass	False	True	True	109	194	20	20	1.0	1.0	A:0:C:0:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:194:N:0:O:0	53,53,56,56	209.237	1092.7	yes	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	136	20	20	0.024691358024691357	0.0	A:0:C:77:G:0:T:2:N:0:O:2	A:0:C:136:G:0:T:0:N:0:O:0	2,33,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	215	20	20	0.07777777777777778	0.0	A:0:C:83:G:0:T:7:N:0:O:0	A:0:C:215:G:0:T:0:N:0:O:0	1,66,6,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6115	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	215	20	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:95:N:0:O:4	A:0:C:0:G:0:T:215:N:0:O:0	0,59,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	206	20	20	0.02247191011235955	0.0	A:2:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:206:T:0:N:0:O:0	2,27,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	83	20	20	0.047619047619047616	0.0	A:59:C:0:G:3:T:0:N:0:O:1	A:83:C:0:G:0:T:0:N:0:O:0	3,41,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	78	20	20	0.030927835051546393	0.0	A:0:C:0:G:3:T:92:N:0:O:2	A:0:C:0:G:0:T:78:N:0:O:0	0,60,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	78	20	20	0.026785714285714284	0.0	A:0:C:3:G:0:T:103:N:0:O:6	A:0:C:0:G:0:T:78:N:0:O:0	0,65,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	79	20	20	0.020833333333333332	0.0	A:0:C:93:G:0:T:2:N:0:O:1	A:0:C:79:G:0:T:0:N:0:O:0	1,69,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	40	20	20	0.02072538860103627	0.0	A:0:C:183:G:0:T:4:N:0:O:6	A:0:C:40:G:0:T:0:N:0:O:0	0,116,4,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	20	20	20	0.043478260869565216	0.0	A:4:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:20:T:0:N:0:O:0	4,31,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	20	20	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:20:N:0:O:0	3,34,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	15	20	20	0.0392156862745098	0.0	A:96:C:0:G:0:T:4:N:0:O:2	A:15:C:0:G:0:T:0:N:0:O:0	0,71,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	181	20	20	0.031746031746031744	0.0	A:117:C:0:G:4:T:0:N:0:O:5	A:181:C:0:G:0:T:0:N:0:O:0	4,59,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	181	20	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	2,37,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	7615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	166	20	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:166:T:0:N:0:O:0	0,64,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	43	20	20	0.02857142857142857	0.0	A:102:C:0:G:0:T:3:N:0:O:0	A:43:C:0:G:0:T:0:N:0:O:0	3,44,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	47	20	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:47:C:0:G:0:T:0:N:0:O:0	2,36,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	33	20	20	0.02	0.0	A:2:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:33:T:0:N:0:O:0	2,32,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	28	20	20	0.02857142857142857	0.0	A:2:C:0:G:66:T:0:N:0:O:2	A:0:C:0:G:28:T:0:N:0:O:0	2,9,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	167	20	20	0.02666666666666667	0.0	A:2:C:0:G:0:T:73:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	2,33,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	167	20	20	0.03	0.0	A:3:C:0:G:0:T:89:N:0:O:8	A:0:C:0:G:0:T:167:N:0:O:0	2,43,1,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	167	20	20	0.023529411764705882	0.0	A:0:C:81:G:0:T:2:N:0:O:2	A:0:C:167:G:0:T:0:N:0:O:0	0,39,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9283	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	48	20	20	0.020833333333333332	0.0	A:2:C:0:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:48:N:0:O:0	0,51,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	64	20	20	0.039603960396039604	0.0	A:0:C:97:G:0:T:4:N:0:O:0	A:0:C:64:G:0:T:0:N:0:O:0	0,60,4,41	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	130	64	20	20	0.023076923076923078	0.0	A:0:C:0:G:127:T:3:N:0:O:0	A:0:C:0:G:64:T:0:N:0:O:0	0,69,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9502	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	53	20	20	0.020833333333333332	0.0	A:0:C:93:G:0:T:2:N:0:O:1	A:0:C:53:G:0:T:0:N:0:O:0	1,64,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	106	20	20	0.01818181818181818	0.0	A:0:C:78:G:0:T:2:N:0:O:30	A:0:C:106:G:0:T:0:N:0:O:0	2,99,0,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	107	20	20	0.022727272727272728	0.009345794392523364	A:0:C:1:G:0:T:43:N:0:O:0	A:0:C:1:G:0:T:106:N:0:O:0	1,43,0,1	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9714	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	107	20	20	0.03225806451612903	0.0	A:3:C:82:G:0:T:0:N:0:O:8	A:0:C:107:G:0:T:0:N:0:O:0	3,63,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9886	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	168	20	20	0.022222222222222223	0.0	A:2:C:75:G:0:T:0:N:0:O:13	A:0:C:168:G:0:T:0:N:0:O:0	0,31,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	168	20	20	0.06172839506172839	0.0	A:5:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:168:T:0:N:0:O:0	5,20,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	168	20	20	0.05319148936170213	0.0	A:0:C:82:G:0:T:5:N:0:O:7	A:0:C:168:G:0:T:0:N:0:O:0	5,28,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	165	20	20	0.0625	0.0	A:6:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	6,28,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	236	298	20	20	0.0211864406779661	0.0	A:5:C:0:G:230:T:0:N:0:O:1	A:0:C:0:G:297:T:1:N:0:O:0	5,86,0,150	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10528	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	218	20	20	0.02127659574468085	0.0	A:0:C:1:G:0:T:45:N:0:O:1	A:0:C:0:G:0:T:218:N:0:O:0	1,45,0,2	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	220	20	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:220:C:0:G:0:T:0:N:0:O:0	3,41,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	220	20	20	0.024096385542168676	0.0	A:0:C:2:G:0:T:81:N:0:O:0	A:0:C:0:G:0:T:220:N:0:O:0	0,45,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	119	20	20	0.047244094488188976	0.0	A:0:C:0:G:121:T:6:N:0:O:0	A:0:C:0:G:119:T:0:N:0:O:0	6,67,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	282	20	20	0.038834951456310676	0.0	A:0:C:99:G:0:T:4:N:0:O:0	A:1:C:281:G:0:T:0:N:0:O:0	0,68,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	10933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	276	20	20	0.029850746268656716	0.0036231884057971015	A:0:C:2:G:0:T:65:N:0:O:0	A:1:C:1:G:0:T:274:N:0:O:0	0,54,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11134	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	185	20	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:94:N:0:O:1	A:0:C:0:G:0:T:185:N:0:O:0	2,56,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11272	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	184	20	20	0.034782608695652174	0.0	A:4:C:0:G:111:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	4,45,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11490	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	81	20	20	0.024691358024691357	0.0	A:0:C:79:G:0:T:2:N:0:O:0	A:1:C:80:G:0:T:0:N:0:O:0	0,46,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	81	20	20	0.025423728813559324	0.0	A:113:C:0:G:0:T:3:N:0:O:2	A:81:C:0:G:0:T:0:N:0:O:0	3,56,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11565	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	79	20	20	0.03	0.0	A:0:C:97:G:0:T:3:N:0:O:0	A:0:C:79:G:0:T:0:N:0:O:0	3,46,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	18	20	20	0.05319148936170213	0.0	A:0:C:87:G:0:T:5:N:0:O:2	A:0:C:18:G:0:T:0:N:0:O:0	0,61,5,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	27	20	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:26:T:1:N:0:O:0	1,56,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	178	162	20	20	0.016853932584269662	0.030864197530864196	A:0:C:0:G:125:T:3:N:0:O:50	A:0:C:0:G:154:T:5:N:0:O:3	1,73,2,105	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	156	20	20	0.043478260869565216	0.0	A:65:C:0:G:3:T:0:N:0:O:1	A:156:C:0:G:0:T:0:N:0:O:0	1,51,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	158	20	20	0.01904761904761905	0.006329113924050633	A:0:C:76:G:0:T:2:N:0:O:27	A:0:C:155:G:0:T:1:N:0:O:2	0,82,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	158	20	20	0.02654867256637168	0.0	A:110:C:3:G:0:T:0:N:0:O:0	A:158:C:0:G:0:T:0:N:0:O:0	2,54,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	12339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	158	20	20	0.026785714285714284	0.0	A:0:C:3:G:0:T:109:N:0:O:0	A:0:C:0:G:0:T:158:N:0:O:0	0,68,3,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	150	20	20	0.11904761904761904	0.0	A:0:C:74:G:0:T:10:N:0:O:0	A:0:C:150:G:0:T:0:N:0:O:0	0,61,10,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	136	20	20	0.025210084033613446	0.0	A:113:C:0:G:3:T:0:N:0:O:3	A:136:C:0:G:0:T:0:N:0:O:0	3,61,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	136	20	20	0.026785714285714284	0.0	A:106:C:0:G:3:T:0:N:0:O:3	A:136:C:0:G:0:T:0:N:0:O:0	3,31,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	136	20	20	0.022388059701492536	0.0	A:131:C:0:G:3:T:0:N:0:O:0	A:136:C:0:G:0:T:0:N:0:O:0	3,59,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	136	20	20	0.029411764705882353	0.0	A:0:C:99:G:0:T:3:N:0:O:0	A:0:C:136:G:0:T:0:N:0:O:0	0,68,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	136	20	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:136:T:0:N:0:O:0	2,28,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	146	154	20	20	0.02054794520547945	0.0	A:3:C:1:G:0:T:136:N:0:O:6	A:0:C:0:G:0:T:154:N:0:O:0	3,71,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13304	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	154	20	20	0.021505376344086023	0.0	A:2:C:0:G:89:T:0:N:0:O:2	A:0:C:0:G:154:T:0:N:0:O:0	1,5,1,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13396	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	43	20	20	0.029411764705882353	0.0	A:66:C:0:G:2:T:0:N:0:O:0	A:43:C:0:G:0:T:0:N:0:O:0	2,17,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	65	20	20	0.09183673469387756	0.0	A:9:C:0:G:87:T:0:N:0:O:2	A:0:C:0:G:65:T:0:N:0:O:0	9,31,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	47	20	20	0.019801980198019802	0.0	A:2:C:94:G:0:T:0:N:0:O:5	A:0:C:47:G:0:T:0:N:0:O:0	2,42,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	46	20	20	0.017391304347826087	0.0	A:2:C:0:G:94:T:0:N:0:O:19	A:0:C:0:G:46:T:0:N:0:O:0	2,32,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	194	20	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:191:T:3:N:0:O:0	2,30,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	194	20	20	0.04878048780487805	0.0	A:38:C:0:G:2:T:0:N:0:O:1	A:194:C:0:G:0:T:0:N:0:O:0	0,7,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	90	20	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:93:N:0:O:4	A:0:C:0:G:0:T:90:N:0:O:0	2,30,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	13973	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	90	20	20	0.02	0.0	A:0:C:2:G:0:T:93:N:0:O:5	A:0:C:0:G:0:T:90:N:0:O:0	2,33,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	14229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	99	20	20	0.02702702702702703	0.0	A:3:C:0:G:108:T:0:N:0:O:0	A:0:C:0:G:98:T:1:N:0:O:0	3,45,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	91	180	20	20	1.0	0.9888888888888889	A:0:C:0:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:2	55,55,36,36	396.599	1203.2	yes	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	173	20	20	0.02247191011235955	0.0	A:0:C:86:G:0:T:2:N:0:O:1	A:1:C:172:G:0:T:0:N:0:O:0	0,61,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	14490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	166	20	20	0.020833333333333332	0.0	A:2:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:166:T:0:N:0:O:0	2,28,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	14677	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	180	20	20	0.02857142857142857	0.0	A:3:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:180:T:0:N:0:O:0	3,37,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	65	20	20	0.030303030303030304	0.0	A:95:C:0:G:3:T:0:N:0:O:1	A:65:C:0:G:0:T:0:N:0:O:0	3,46,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	65	20	20	0.02654867256637168	0.0	A:3:C:0:G:110:T:0:N:0:O:0	A:0:C:0:G:64:T:1:N:0:O:0	3,47,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	74	20	20	0.020202020202020204	0.0	A:2:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:74:T:0:N:0:O:0	2,36,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	73	20	20	0.025974025974025976	0.0	A:0:C:2:G:0:T:74:N:0:O:1	A:0:C:0:G:0:T:73:N:0:O:0	0,70,2,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	15299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	184	20	20	0.020618556701030927	0.0	A:0:C:94:G:0:T:2:N:0:O:1	A:1:C:183:G:0:T:0:N:0:O:0	1,42,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	15878	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	182	20	20	0.02158273381294964	0.0	A:3:C:0:G:125:T:0:N:0:O:11	A:0:C:1:G:180:T:1:N:0:O:0	3,59,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	182	20	20	0.023809523809523808	0.0	A:0:C:40:G:0:T:1:N:0:O:1	A:0:C:182:G:0:T:0:N:0:O:0	1,23,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	110	63	20	20	0.02727272727272727	0.0	A:0:C:107:G:3:T:0:N:0:O:0	A:0:C:63:G:0:T:0:N:0:O:0	3,51,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	19	20	20	0.021052631578947368	0.0	A:0:C:0:G:2:T:90:N:0:O:3	A:0:C:1:G:0:T:18:N:0:O:0	2,26,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	16507	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	19	20	20	0.028037383177570093	0.0	A:0:C:0:G:103:T:3:N:0:O:1	A:1:C:0:G:18:T:0:N:0:O:0	1,37,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	19	20	20	0.043478260869565216	0.0	A:4:C:0:G:83:T:0:N:0:O:5	A:0:C:0:G:19:T:0:N:0:O:0	4,19,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	202	20	20	0.036585365853658534	0.0	A:78:C:0:G:3:T:0:N:0:O:1	A:202:C:0:G:0:T:0:N:0:O:0	1,44,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	202	20	20	0.021505376344086023	0.0049504950495049506	A:2:C:1:G:90:T:0:N:0:O:0	A:1:C:0:G:201:T:0:N:0:O:0	2,33,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	16988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	202	20	20	0.0297029702970297	0.0	A:3:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:202:T:0:N:0:O:0	2,39,1,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	202	20	20	0.047058823529411764	0.0	A:80:C:4:G:0:T:0:N:0:O:1	A:202:C:0:G:0:T:0:N:0:O:0	4,37,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	71	158	20	20	0.028169014084507043	0.0	A:2:C:0:G:0:T:68:N:0:O:1	A:0:C:0:G:0:T:156:N:0:O:2	1,10,1,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17201	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	155	20	20	0.01904761904761905	0.0	A:2:C:0:G:0:T:96:N:0:O:7	A:0:C:0:G:0:T:154:N:0:O:1	2,42,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	151	20	20	0.02040816326530612	0.0	A:2:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:151:T:0:N:0:O:0	2,39,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	151	20	20	0.04672897196261682	0.0	A:5:C:0:G:100:T:0:N:0:O:2	A:0:C:0:G:151:T:0:N:0:O:0	5,40,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	151	20	20	0.022222222222222223	0.0	A:2:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:151:T:0:N:0:O:0	2,49,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	151	20	20	0.04040404040404041	0.0	A:0:C:95:G:0:T:4:N:0:O:0	A:0:C:151:G:0:T:0:N:0:O:0	0,51,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	187	321	20	20	0.0213903743315508	0.0	A:0:C:183:G:0:T:4:N:0:O:0	A:0:C:321:G:0:T:0:N:0:O:0	1,112,3,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	174	20	20	0.05172413793103448	0.0	A:6:C:0:G:109:T:0:N:0:O:1	A:0:C:0:G:173:T:1:N:0:O:0	0,66,6,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17876	C	A	C	16	ignore low frequency variant	Pass	False	False	True	71	174	20	20	0.04225352112676056	0.0	A:3:C:65:G:0:T:0:N:0:O:3	A:0:C:174:G:0:T:0:N:0:O:0	0,35,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17878	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	174	20	20	0.02	0.0	A:1:C:89:G:0:T:2:N:0:O:8	A:3:C:171:G:0:T:0:N:0:O:0	0,66,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	174	20	20	0.02531645569620253	0.005747126436781609	A:2:C:0:G:77:T:0:N:0:O:0	A:1:C:0:G:173:T:0:N:0:O:0	2,16,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	201	231	20	20	0.04477611940298507	0.0	A:9:C:0:G:190:T:0:N:0:O:2	A:0:C:0:G:231:T:0:N:0:O:0	8,90,1,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	18271	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	87	20	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:86:T:1:N:0:O:0	2,33,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	204	20	20	0.024390243902439025	0.0	A:36:C:0:G:0:T:1:N:0:O:4	A:204:C:0:G:0:T:0:N:0:O:0	0,19,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	204	20	20	0.03260869565217391	0.0	A:0:C:0:G:3:T:89:N:0:O:0	A:0:C:0:G:0:T:204:N:0:O:0	3,41,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	19044	T	A	T	16	ignore low frequency variant	Pass	False	False	True	156	240	20	20	0.02564102564102564	0.0	A:4:C:0:G:0:T:141:N:0:O:11	A:0:C:1:G:0:T:239:N:0:O:0	3,72,1,84	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	10	20	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:10:T:0:N:0:O:0	2,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	60	9	20	20	0.06666666666666667	0.0	A:0:C:56:G:0:T:4:N:0:O:0	A:0:C:9:G:0:T:0:N:0:O:0	0,47,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	8	20	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:8:T:0:N:0:O:0	3,30,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	64	20	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:94:N:0:O:5	A:0:C:0:G:0:T:64:N:0:O:0	0,64,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	31	20	20	0.022222222222222223	0.0	A:3:C:0:G:125:T:0:N:0:O:7	A:0:C:0:G:31:T:0:N:0:O:0	3,69,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	111	20	20	0.020689655172413793	0.0	A:142:C:0:G:3:T:0:N:0:O:0	A:111:C:0:G:0:T:0:N:0:O:0	3,66,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	243	20	20	0.05102040816326531	0.0	A:182:C:0:G:10:T:1:N:0:O:3	A:243:C:0:G:0:T:0:N:0:O:0	10,56,0,140	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	20886	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	222	20	20	0.021052631578947368	0.0	A:92:C:0:G:2:T:0:N:0:O:1	A:222:C:0:G:0:T:0:N:0:O:0	2,26,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	20906	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	253	20	20	0.03260869565217391	0.0	A:0:C:89:G:0:T:3:N:0:O:0	A:0:C:253:G:0:T:0:N:0:O:0	3,36,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	6	20	20	0.03409090909090909	0.0	A:0:C:0:G:75:T:3:N:0:O:10	A:0:C:0:G:6:T:0:N:0:O:0	0,66,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	7	20	20	0.0196078431372549	0.0	A:0:C:1:G:0:T:29:N:0:O:21	A:0:C:0:G:0:T:7:N:0:O:0	0,41,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	30	20	20	0.02197802197802198	0.0	A:0:C:88:G:0:T:2:N:0:O:1	A:0:C:30:G:0:T:0:N:0:O:0	0,51,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	44	20	20	0.018518518518518517	0.0	A:2:C:2:G:0:T:82:N:0:O:22	A:0:C:0:G:0:T:44:N:0:O:0	0,89,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21558	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	44	20	20	0.025210084033613446	0.0	A:3:C:0:G:115:T:0:N:0:O:1	A:0:C:0:G:44:T:0:N:0:O:0	3,47,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	44	20	20	0.02586206896551724	0.0	A:113:C:0:G:3:T:0:N:0:O:0	A:44:C:0:G:0:T:0:N:0:O:0	3,44,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	170	20	20	0.06329113924050633	0.0	A:0:C:70:G:0:T:5:N:0:O:4	A:0:C:170:G:0:T:0:N:0:O:0	2,20,3,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21743	A	C	A	16	ignore low frequency variant	Pass	False	False	True	121	170	20	20	0.024793388429752067	0.0	A:118:C:3:G:0:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	0,69,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	84	170	20	20	0.023809523809523808	0.0	A:0:C:0:G:2:T:80:N:0:O:2	A:0:C:0:G:0:T:170:N:0:O:0	1,32,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	147	20	20	0.03333333333333333	0.0	A:3:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:147:T:0:N:0:O:0	2,47,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	147	20	20	0.03296703296703297	0.0	A:3:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:147:T:0:N:0:O:0	0,42,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	123	20	20	0.030612244897959183	0.0	A:0:C:95:G:0:T:3:N:0:O:0	A:1:C:122:G:0:T:0:N:0:O:0	0,64,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	21	20	20	0.02127659574468085	0.0	A:45:C:0:G:1:T:0:N:0:O:1	A:21:C:0:G:0:T:0:N:0:O:0	1,19,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22380	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	23	20	20	0.02040816326530612	0.0	A:1:C:0:G:47:T:0:N:0:O:1	A:0:C:0:G:23:T:0:N:0:O:0	0,28,1,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22443	A	T	A	16	ignore low frequency variant	Pass	False	False	True	48	23	20	20	0.020833333333333332	0.0	A:44:C:0:G:0:T:1:N:0:O:3	A:23:C:0:G:0:T:0:N:0:O:0	1,28,0,20	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22510	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	23	20	20	0.02040816326530612	0.0	A:1:C:0:G:0:T:48:N:0:O:0	A:0:C:0:G:0:T:23:N:0:O:0	1,28,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	22955	G	T	G	16	ignore low frequency variant	Pass	False	False	True	146	165	20	20	0.02054794520547945	0.006060606060606061	A:0:C:0:G:142:T:3:N:0:O:1	A:0:C:0:G:164:T:1:N:0:O:0	1,69,2,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	142	20	20	0.03571428571428571	0.0	A:54:C:0:G:2:T:0:N:0:O:0	A:142:C:0:G:0:T:0:N:0:O:0	0,25,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	130	142	20	20	0.9230769230769231	1.0	A:0:C:0:G:120:T:1:N:0:O:9	A:0:C:0:G:142:T:0:N:0:O:0	55,65,65,65	139.237	1605.7	yes	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	183	20	20	0.03571428571428571	0.0	A:3:C:0:G:75:T:0:N:0:O:6	A:0:C:0:G:181:T:0:N:0:O:2	3,14,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	152	20	20	0.024691358024691357	0.0	A:79:C:0:G:2:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	2,15,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	152	20	20	0.13414634146341464	0.0	A:0:C:71:G:0:T:11:N:0:O:0	A:0:C:152:G:0:T:0:N:0:O:0	0,62,11,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	152	20	20	0.042105263157894736	0.006578947368421052	A:0:C:4:G:0:T:91:N:0:O:0	A:0:C:1:G:0:T:151:N:0:O:0	0,66,4,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	23912	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	152	20	20	0.02040816326530612	0.0	A:2:C:91:G:0:T:1:N:0:O:4	A:0:C:152:G:0:T:0:N:0:O:0	2,48,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	152	20	20	0.07462686567164178	0.0	A:5:C:0:G:0:T:62:N:0:O:0	A:0:C:0:G:0:T:152:N:0:O:0	5,17,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	152	20	20	0.07042253521126761	0.0	A:5:C:0:G:65:T:1:N:0:O:0	A:0:C:0:G:151:T:1:N:0:O:0	5,10,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	152	20	20	0.029411764705882353	0.006578947368421052	A:2:C:0:G:65:T:0:N:0:O:1	A:1:C:0:G:151:T:0:N:0:O:0	2,6,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24058	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	152	20	20	0.028985507246376812	0.0	A:0:C:67:G:0:T:2:N:0:O:0	A:0:C:152:G:0:T:0:N:0:O:0	0,14,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	153	20	20	0.04597701149425287	0.0	A:4:C:0:G:81:T:0:N:0:O:2	A:0:C:0:G:152:T:1:N:0:O:0	4,15,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24435	C	T	C	16	ignore low frequency variant	Pass	False	False	True	234	324	20	20	0.021367521367521368	0.0	A:0:C:223:G:0:T:5:N:0:O:6	A:0:C:324:G:0:T:0:N:0:O:0	0,119,5,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	181	20	20	0.031578947368421054	0.0	A:2:C:88:G:0:T:3:N:0:O:2	A:0:C:181:G:0:T:0:N:0:O:0	0,46,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	181	20	20	0.025210084033613446	0.0	A:115:C:0:G:0:T:3:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	3,72,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	181	20	20	0.03529411764705882	0.0	A:81:C:3:G:0:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	3,40,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24704	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	181	20	20	0.020134228187919462	0.0	A:0:C:145:G:0:T:3:N:0:O:1	A:4:C:177:G:0:T:0:N:0:O:0	0,77,3,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	136	20	20	0.01818181818181818	0.0	A:2:C:0:G:95:T:0:N:0:O:13	A:0:C:0:G:135:T:0:N:0:O:1	2,35,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	213	20	20	0.05952380952380952	0.0	A:5:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:213:T:0:N:0:O:0	0,52,5,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	213	20	20	0.06329113924050633	0.0	A:0:C:0:G:5:T:74:N:0:O:0	A:0:C:0:G:0:T:213:N:0:O:0	0,49,5,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25195	A	T	A	16	ignore low frequency variant	Pass	False	False	True	125	237	20	20	0.024	0.0	A:122:C:0:G:0:T:3:N:0:O:0	A:237:C:0:G:0:T:0:N:0:O:0	2,66,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25285	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	139	20	20	0.02564102564102564	0.0	A:3:C:0:G:0:T:113:N:0:O:1	A:0:C:0:G:0:T:139:N:0:O:0	0,58,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	151	20	20	0.02040816326530612	0.0	A:91:C:0:G:2:T:0:N:0:O:5	A:151:C:0:G:0:T:0:N:0:O:0	2,25,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	151	20	20	0.06796116504854369	0.0	A:96:C:0:G:0:T:7:N:0:O:0	A:150:C:1:G:0:T:0:N:0:O:0	7,46,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	151	20	20	0.03125	0.0	A:0:C:0:G:3:T:92:N:0:O:1	A:0:C:0:G:0:T:151:N:0:O:0	3,37,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	111	151	20	20	1.0	1.0	A:0:C:0:G:0:T:111:N:0:O:0	A:0:C:0:G:0:T:151:N:0:O:0	51,51,60,60	210.0	1913.9	yes	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	69	151	20	20	0.028985507246376812	0.0	A:67:C:2:G:0:T:0:N:0:O:0	A:151:C:0:G:0:T:0:N:0:O:0	2,33,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	130	181	20	20	0.06153846153846154	0.011049723756906077	A:8:C:70:G:0:T:0:N:0:O:52	A:2:C:179:G:0:T:0:N:0:O:0	8,37,0,93	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	181	20	20	0.125	0.0	A:41:C:6:G:0:T:0:N:0:O:1	A:181:C:0:G:0:T:0:N:0:O:0	4,32,2,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	181	20	20	0.025	0.0	A:0:C:2:G:0:T:76:N:0:O:2	A:0:C:0:G:0:T:181:N:0:O:0	0,42,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	202	20	20	0.025210084033613446	0.0049504950495049506	A:0:C:86:G:0:T:3:N:0:O:30	A:0:C:200:G:0:T:1:N:0:O:1	0,98,3,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	200	20	20	0.02	0.0	A:0:C:1:G:0:T:49:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	0,48,1,2	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	179	20	20	0.0379746835443038	0.0	A:1:C:75:G:0:T:3:N:0:O:0	A:2:C:177:G:0:T:0:N:0:O:0	1,53,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	178	20	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	1,31,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	314	20	20	0.022727272727272728	0.0	A:0:C:172:G:0:T:4:N:0:O:0	A:0:C:314:G:0:T:0:N:0:O:0	0,140,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	61	154	20	20	0.03278688524590164	0.006493506493506494	A:0:C:2:G:0:T:58:N:0:O:1	A:0:C:1:G:0:T:153:N:0:O:0	1,30,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	154	20	20	0.02	0.0	A:0:C:2:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	0,71,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	154	20	20	0.052083333333333336	0.0	A:89:C:0:G:0:T:5:N:0:O:2	A:154:C:0:G:0:T:0:N:0:O:0	5,26,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	154	20	20	0.10975609756097561	0.0	A:9:C:0:G:73:T:0:N:0:O:0	A:0:C:0:G:154:T:0:N:0:O:0	9,13,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	154	20	20	0.0375	0.0	A:0:C:75:G:0:T:3:N:0:O:2	A:0:C:154:G:0:T:0:N:0:O:0	0,62,3,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	182	20	20	0.020833333333333332	0.0	A:93:C:0:G:0:T:2:N:0:O:1	A:182:C:0:G:0:T:0:N:0:O:0	2,54,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	222	20	20	0.030303030303030304	0.0	A:3:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:221:T:1:N:0:O:0	3,29,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	234	20	20	0.03	0.0	A:94:C:0:G:3:T:0:N:0:O:3	A:234:C:0:G:0:T:0:N:0:O:0	3,27,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	234	20	20	0.04819277108433735	0.0	A:4:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:233:T:1:N:0:O:0	4,14,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	230	20	20	0.07058823529411765	0.0	A:0:C:79:G:0:T:6:N:0:O:0	A:0:C:230:G:0:T:0:N:0:O:0	0,64,6,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27106	C	G	C	16	ignore low frequency variant	Pass	False	False	True	89	230	20	20	0.02247191011235955	0.0	A:0:C:86:G:2:T:1:N:0:O:0	A:1:C:229:G:0:T:0:N:0:O:0	0,67,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	177	20	20	0.031914893617021274	0.0	A:0:C:3:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	0,49,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	46	20	20	0.02127659574468085	0.0	A:92:C:0:G:2:T:0:N:0:O:0	A:46:C:0:G:0:T:0:N:0:O:0	2,38,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	46	20	20	0.02197802197802198	0.0	A:2:C:87:G:0:T:0:N:0:O:2	A:0:C:46:G:0:T:0:N:0:O:0	2,52,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	27964	C	T	T	17	accept high frequency variant	Pass	False	True	True	136	214	20	20	0.9926470588235294	1.0	A:0:C:0:G:0:T:135:N:0:O:1	A:0:C:0:G:0:T:214:N:0:O:0	73,74,62,62	69.237	1720.7	yes	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	28148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	66	165	20	20	0.030303030303030304	0.0	A:0:C:1:G:2:T:63:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	2,63,0,3	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	165	20	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	2,64,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28150	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	165	20	20	0.02040816326530612	0.0	A:2:C:0:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	2,64,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	68	165	20	20	0.029411764705882353	0.0	A:2:C:0:G:2:T:63:N:0:O:1	A:0:C:0:G:0:T:165:N:0:O:0	2,37,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	163	20	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:161:T:2:N:0:O:0	0,67,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	151	20	20	0.04838709677419355	0.0	A:59:C:0:G:3:T:0:N:0:O:0	A:151:C:0:G:0:T:0:N:0:O:0	3,3,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	151	20	20	0.03409090909090909	0.0	A:0:C:83:G:0:T:3:N:0:O:2	A:0:C:151:G:0:T:0:N:0:O:0	0,55,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	151	20	20	0.024691358024691357	0.0	A:2:C:0:G:78:T:1:N:0:O:0	A:0:C:0:G:151:T:0:N:0:O:0	2,18,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	151	20	20	0.019801980198019802	0.0	A:0:C:97:G:0:T:2:N:0:O:2	A:1:C:150:G:0:T:0:N:0:O:0	0,68,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	199	306	20	20	0.020100502512562814	0.0	A:0:C:4:G:0:T:190:N:0:O:5	A:0:C:0:G:0:T:306:N:0:O:0	0,124,4,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	179	20	20	0.038461538461538464	0.0	A:3:C:0:G:73:T:0:N:0:O:2	A:0:C:0:G:178:T:1:N:0:O:0	3,12,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	179	20	20	0.022988505747126436	0.0	A:0:C:2:G:0:T:84:N:0:O:1	A:0:C:0:G:0:T:179:N:0:O:0	0,53,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	179	20	20	0.043859649122807015	0.00558659217877095	A:5:C:107:G:0:T:0:N:0:O:2	A:1:C:178:G:0:T:0:N:0:O:0	5,58,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29131	T	G	T	16	ignore low frequency variant	Pass	False	False	True	132	178	20	20	0.022727272727272728	0.0	A:0:C:0:G:3:T:112:N:0:O:17	A:0:C:0:G:0:T:178:N:0:O:0	0,65,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29170	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	178	20	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	2,58,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	32	20	20	0.02631578947368421	0.03125	A:37:C:0:G:1:T:0:N:0:O:0	A:31:C:0:G:1:T:0:N:0:O:0	0,1,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29412	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	32	20	20	0.02040816326530612	0.0	A:96:C:2:G:0:T:0:N:0:O:0	A:32:C:0:G:0:T:0:N:0:O:0	1,48,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29564	T	C	T	16	ignore low frequency variant	Pass	False	False	True	185	23	20	20	0.021621621621621623	0.0	A:0:C:4:G:0:T:178:N:0:O:3	A:0:C:0:G:0:T:23:N:0:O:0	0,108,4,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29578	C	T	C	16	ignore low frequency variant	Pass	False	False	True	185	25	20	20	0.021621621621621623	0.0	A:0:C:175:G:0:T:4:N:0:O:6	A:0:C:25:G:0:T:0:N:0:O:0	4,100,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29692	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	24	20	20	0.029411764705882353	0.0	A:1:C:0:G:33:T:0:N:0:O:0	A:0:C:0:G:24:T:0:N:0:O:0	0,24,1,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29711	G	C	G	16	ignore low frequency variant	Pass	False	False	True	55	25	20	20	0.01818181818181818	0.0	A:0:C:1:G:47:T:0:N:0:O:7	A:0:C:0:G:25:T:0:N:0:O:0	0,30,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29750	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	32	20	20	0.022727272727272728	0.0	A:0:C:41:G:0:T:1:N:0:O:2	A:0:C:32:G:0:T:0:N:0:O:0	0,28,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	46	33	20	20	0.06521739130434782	0.0	A:0:C:3:G:41:T:0:N:0:O:2	A:0:C:0:G:32:T:0:N:0:O:1	3,17,0,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29800	G	T	G	16	ignore low frequency variant	Pass	False	False	True	68	32	20	20	0.014705882352941176	0.0	A:0:C:0:G:49:T:1:N:0:O:18	A:0:C:0:G:32:T:0:N:0:O:0	0,45,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00059	artic-pipeline	NB04	MN908947.3	29824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	34	20	20	0.02	0.0	A:49:C:0:G:1:T:0:N:0:O:0	A:34:C:0:G:0:T:0:N:0:O:0	1,22,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00059	artic-pipeline	NB04	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	74	A	C	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:1:G:0:T:0:N:0:O:0	.	0,5,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	83	T	A	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:0:G:0:T:19:N:0:O:0	.	0,5,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	117	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,5,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	19	.	20	.	0.8947368421052632	.	A:0:C:0:G:0:T:17:N:0:O:2	.	6,8,11,11	276.227	1216.4	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	316	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.1	.	A:0:C:2:G:0:T:18:N:0:O:0	.	0,12,2,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:88:N:0:O:0	.	0,61,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:84:N:0:O:1	.	0,50,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.027027027027027032	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,55,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:108:C:0:G:4:T:0:N:0:O:0	.	4,41,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	805	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:1:C:0:G:122:T:4:N:0:O:0	.	2,41,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,15,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:0:C:128:G:0:T:3:N:0:O:1	.	0,84,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.015873015873015872	.	A:2:C:88:G:0:T:0:N:0:O:36	.	1,64,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:59:C:2:G:0:T:0:N:0:O:2	.	2,43,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:64:C:0:G:3:T:0:N:0:O:1	.	2,16,1,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:0:G:118:T:0:N:0:O:12	.	2,61,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.12056737588652483	.	A:17:C:0:G:122:T:0:N:0:O:2	.	17,56,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:0:T:88:N:0:O:2	.	0,68,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:0:T:82:N:0:O:0	.	2,49,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	110	.	20	.	1.0	.	A:0:C:0:G:0:T:110:N:0:O:0	.	57,57,53,53	342.247	1379.2	.	.	.	.	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168683	.	A:2:C:0:G:77:T:0:N:0:O:4	.	0,32,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	2794	T	G	T	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.02564102564102564	.	A:0:C:0:G:4:T:151:N:0:O:1	.	0,82,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.030120481927710843	.	A:156:C:0:G:5:T:0:N:0:O:5	.	5,72,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	20	.	0.6639344262295082	.	A:0:C:0:G:0:T:81:N:0:O:41	.	42,83,39,39	60.206	1406.7	.	.	.	.	mixed position	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	3133	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:2:G:0:T:0:N:0:O:1	.	0,52,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:90:T:2:N:0:O:0	.	0,40,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:4:G:0:T:101:N:0:O:0	.	0,62,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.02469135802469136	.	A:0:C:0:G:62:T:2:N:0:O:17	.	0,59,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:90:N:0:O:2	.	2,14,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:84:G:0:T:2:N:0:O:2	.	0,56,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030307	.	A:128:C:0:G:4:T:0:N:0:O:0	.	4,52,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3514	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,47,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,61,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3747	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:87:G:0:T:2:N:0:O:3	.	0,72,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:0:G:76:T:3:N:0:O:9	.	0,55,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:73:T:0:N:0:O:0	.	0,49,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:0:C:67:G:0:T:4:N:0:O:1	.	1,59,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980683	.	A:1:C:0:G:180:T:5:N:0:O:21	.	0,186,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:138:C:0:G:0:T:4:N:0:O:10	.	0,96,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:97:G:0:T:3:N:0:O:6	.	0,76,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.04615384615384616	.	A:1:C:0:G:6:T:117:N:0:O:6	.	0,71,6,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:112:T:3:N:0:O:1	.	3,39,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:2:G:0:T:0:N:0:O:0	.	1,38,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.034883720930232565	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,21,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:0:C:61:G:0:T:3:N:0:O:0	.	0,58,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:0:C:6:G:0:T:80:N:0:O:1	.	0,60,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.020408163265306117	.	A:2:C:0:G:78:T:0:N:0:O:18	.	0,22,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0198019801980198	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,61,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.10714285714285714	.	A:1:C:72:G:0:T:9:N:0:O:2	.	0,59,9,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:102:N:0:O:20	.	1,57,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.04166666666666666	.	A:0:C:92:G:0:T:4:N:0:O:0	.	4,51,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	6203	A	T	A	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.021367521367521368	.	A:227:C:0:G:0:T:5:N:0:O:2	.	4,73,1,161	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:1:C:112:G:0:T:3:N:0:O:3	.	0,76,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6584	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.02985074626865672	.	A:130:C:0:G:4:T:0:N:0:O:0	.	4,64,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6585	T	A	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:4:C:0:G:0:T:131:N:0:O:0	.	4,62,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6646	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:117:C:0:G:3:T:0:N:0:O:4	.	3,55,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:3:T:104:N:0:O:5	.	1,66,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.03658536585365853	.	A:0:C:79:G:0:T:3:N:0:O:0	.	0,54,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.03864734299516908	.	A:189:C:0:G:8:T:2:N:0:O:8	.	8,79,0,128	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.030303030303030307	.	A:1:C:184:G:0:T:6:N:0:O:7	.	0,116,6,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0198019801980198	.	A:2:C:0:G:96:T:0:N:0:O:3	.	2,35,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:79:C:0:G:0:T:4:N:0:O:1	.	0,64,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7392	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168683	.	A:0:C:79:G:0:T:2:N:0:O:2	.	0,60,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.0975609756097561	.	A:8:C:0:G:73:T:0:N:0:O:1	.	8,20,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882356	.	A:3:C:0:G:98:T:0:N:0:O:1	.	3,27,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.02298850574712644	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,22,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:70:G:0:T:2:N:0:O:16	.	0,77,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376805	.	A:0:C:63:G:0:T:2:N:0:O:4	.	0,45,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372092	.	A:0:C:5:G:0:T:77:N:0:O:4	.	0,40,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	7800	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:86:G:0:T:4:N:0:O:1	.	1,37,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7817	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:37:G:0:T:1:N:0:O:1	.	1,33,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7822	T	A	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882356	.	A:2:C:0:G:0:T:66:N:0:O:0	.	1,37,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:85:C:0:G:3:T:0:N:0:O:0	.	3,24,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984492	.	A:124:C:4:G:0:T:0:N:0:O:1	.	0,74,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.030303030303030307	.	A:0:C:0:G:153:T:5:N:0:O:7	.	5,82,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:3:G:0:T:121:N:0:O:0	.	0,76,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8478	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:90:N:0:O:8	.	0,51,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.029126213592233014	.	A:0:C:3:G:0:T:100:N:0:O:0	.	0,65,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.04878048780487805	.	A:0:C:2:G:0:T:39:N:0:O:0	.	1,39,1,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8742	G	T	G	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.019230769230769232	.	A:0:C:0:G:130:T:3:N:0:O:23	.	3,90,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:66:T:0:N:0:O:5	.	2,6,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:1:N:0:O:0	.	2,34,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882356	.	A:0:C:99:G:0:T:3:N:0:O:0	.	0,64,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:0:G:119:T:4:N:0:O:1	.	0,67,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:69:G:0:T:2:N:0:O:26	.	2,90,0,7	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	1,40,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:75:T:0:N:0:O:1	.	2,13,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:91:C:0:G:2:T:0:N:0:O:2	.	2,50,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10139	G	A	G	16	ignore low frequency variant	Pass	False	False	True	233	.	20	.	0.02145922746781116	.	A:5:C:0:G:225:T:2:N:0:O:1	.	5,99,0,134	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10148	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.02298850574712644	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,41,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,17,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.04385964912280702	.	A:0:C:108:G:0:T:5:N:0:O:1	.	0,68,5,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:119:C:0:G:4:T:0:N:0:O:0	.	4,51,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:0:C:87:G:0:T:5:N:0:O:0	.	0,59,5,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10858	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.03448275862068965	.	A:84:C:0:G:0:T:3:N:0:O:0	.	3,37,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.027027027027027032	.	A:2:C:0:G:72:T:0:N:0:O:0	.	2,9,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.04901960784313725	.	A:0:C:0:G:5:T:95:N:0:O:2	.	0,58,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:90:G:0:T:0:N:0:O:11	.	2,52,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	11080	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:20:N:0:O:0	.	1,6,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	11100	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.02469135802469136	.	A:2:C:0:G:0:T:79:N:0:O:0	.	1,49,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	11457	T	C	C	14	new position at high frequency	Pass	False	True	True	101	.	20	.	1.0	.	A:0:C:101:G:0:T:0:N:0:O:0	.	53,53,48,48	406.015	1689.7	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	11495	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.02479338842975207	.	A:0:C:3:G:0:T:116:N:0:O:2	.	0,64,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	11961	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.02298850574712644	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,67,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:2:T:0:N:0:O:0	.	0,54,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	12043	C	T	C	12	misc mixed variant	Check	False	False	True	130	.	20	.	0.5384615384615384	.	A:0:C:60:G:0:T:70:N:0:O:0	.	37,64,33,66	228.041	.	.	.	.	mismatch(m+s)	mixed position	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12053	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.02803738317757009	.	A:0:C:100:G:0:T:3:N:0:O:4	.	0,57,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:83:G:0:T:2:N:0:O:24	.	0,92,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.04629629629629629	.	A:5:C:0:G:98:T:0:N:0:O:5	.	5,37,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12467	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.03448275862068965	.	A:3:C:0:G:83:T:0:N:0:O:1	.	3,30,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:93:G:0:T:0:N:0:O:2	.	0,59,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12489	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,66,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:0:C:78:G:0:T:7:N:0:O:0	.	0,62,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	0,34,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02797202797202797	.	A:133:C:0:G:4:T:0:N:0:O:6	.	4,74,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.045045045045045036	.	A:0:C:105:G:0:T:5:N:0:O:1	.	0,82,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.029126213592233014	.	A:3:C:0:G:97:T:0:N:0:O:3	.	3,31,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13124	G	T	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:45:T:1:N:0:O:0	.	0,24,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:78:N:0:O:4	.	0,33,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.08641975308641975	.	A:0:C:74:G:0:T:7:N:0:O:0	.	0,71,7,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:55:C:0:G:2:T:0:N:0:O:3	.	0,36,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13485	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882356	.	A:0:C:2:G:0:T:64:N:0:O:2	.	0,41,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:74:T:0:N:0:O:4	.	3,15,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,28,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.028571428571428567	.	A:102:C:0:G:3:T:0:N:0:O:0	.	3,38,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.040816326530612235	.	A:4:C:89:G:0:T:0:N:0:O:5	.	4,42,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.02298850574712644	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,28,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.020408163265306117	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,40,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	14392	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:3:G:0:T:88:N:0:O:2	.	0,67,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	100	.	20	.	0.99	.	A:0:C:0:G:0:T:99:N:0:O:1	.	55,56,44,44	258.79	1257.5	.	.	.	.	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	14657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:0:C:98:G:0:T:2:N:0:O:14	.	0,66,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	14913	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.07692307692307693	.	A:0:C:84:G:0:T:7:N:0:O:0	.	3,31,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:87:T:0:N:0:O:0	.	4,29,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:0:C:6:G:0:T:74:N:0:O:0	.	0,64,6,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	15103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:76:G:2:T:2:N:0:O:2	.	0,63,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	15380	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.02479338842975207	.	A:3:C:0:G:118:T:0:N:0:O:0	.	3,58,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.020408163265306117	.	A:96:C:0:G:2:T:0:N:0:O:0	.	0,50,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:86:T:2:N:0:O:0	.	0,45,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.13793103448275862	.	A:0:C:49:G:0:T:8:N:0:O:1	.	1,35,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:0:G:2:T:73:N:0:O:0	.	1,28,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04032258064516129	.	A:0:C:0:G:117:T:5:N:0:O:2	.	5,62,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882356	.	A:3:C:0:G:96:T:0:N:0:O:3	.	3,26,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	16823	G	A	G	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:1:C:0:G:48:T:0:N:0:O:4	.	1,33,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.08163265306122447	.	A:0:C:0:G:8:T:90:N:0:O:0	.	1,67,7,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.018292682926829267	.	A:3:C:0:G:120:T:0:N:0:O:41	.	1,98,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,60,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:69:C:5:G:0:T:0:N:0:O:0	.	5,41,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.023121387283236997	.	A:4:C:0:G:164:T:0:N:0:O:5	.	4,36,0,137	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.054054054054054064	.	A:4:C:0:G:0:T:68:N:0:O:2	.	4,11,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:2:T:0:N:0:O:1	.	2,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17280	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.033057851239669415	.	A:0:C:0:G:116:T:4:N:0:O:1	.	4,56,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.03658536585365853	.	A:3:C:0:G:79:T:0:N:0:O:0	.	3,31,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:76:G:0:T:2:N:0:O:2	.	0,61,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:84:T:0:N:0:O:0	.	4,21,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030307	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,59,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	181	.	20	.	0.022099447513812157	.	A:0:C:177:G:0:T:4:N:0:O:0	.	0,110,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0759493670886076	.	A:0:C:73:G:0:T:6:N:0:O:0	.	0,45,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.03448275862068965	.	A:104:C:0:G:1:T:4:N:0:O:7	.	0,43,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.07200000000000001	.	A:9:C:0:G:116:T:0:N:0:O:0	.	0,64,9,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17876	C	A	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:71:G:0:T:0:N:0:O:4	.	0,24,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:86:G:0:T:2:N:0:O:3	.	0,71,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	2,15,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	18100	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222227	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,57,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:3:C:0:G:0:T:110:N:0:O:20	.	3,48,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:110:T:3:N:0:O:0	.	0,71,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,20,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:0:G:4:T:104:N:0:O:0	.	3,47,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	18962	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:118:G:0:T:3:N:0:O:2	.	0,65,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.07563025210084033	.	A:9:C:0:G:109:T:0:N:0:O:1	.	9,26,0,93	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.061728395061728385	.	A:0:C:75:G:0:T:5:N:0:O:1	.	0,59,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	19493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.020408163265306117	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,36,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,32,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	19655	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:87:C:0:G:2:T:0:N:0:O:10	.	1,44,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.05882352941176471	.	A:0:C:2:G:0:T:32:N:0:O:0	.	2,24,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086027	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:120:G:0:T:0:N:0:O:0	.	0,67,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	20686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.03658536585365853	.	A:2:C:0:G:76:T:3:N:0:O:1	.	3,42,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.02072538860103627	.	A:184:C:0:G:4:T:0:N:0:O:5	.	4,65,0,128	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:88:C:0:G:2:T:0:N:0:O:5	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	2,29,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:0:C:0:G:69:T:6:N:0:O:5	.	0,54,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.02803738317757009	.	A:0:C:104:G:0:T:3:N:0:O:0	.	0,69,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:81:G:0:T:2:N:0:O:2	.	0,67,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21422	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	1,31,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.02803738317757009	.	A:104:C:0:G:0:T:3:N:0:O:0	.	1,36,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,12,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21558	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.02325581395348837	.	A:3:C:0:G:126:T:0:N:0:O:0	.	3,50,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21559	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:128:C:0:G:3:T:0:N:0:O:0	.	3,47,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:136:C:0:G:0:T:3:N:0:O:0	.	3,57,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.05660377358490566	.	A:6:C:0:G:99:T:0:N:0:O:1	.	6,50,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:0:G:4:T:121:N:0:O:0	.	4,46,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:104:T:0:N:0:O:1	.	3,31,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:89:T:0:N:0:O:2	.	3,18,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:0:G:3:T:116:N:0:O:20	.	0,69,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222227	.	A:0:C:3:G:0:T:132:N:0:O:0	.	0,74,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:122:C:0:G:3:T:0:N:0:O:3	.	3,52,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23315	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:112:G:0:T:3:N:0:O:3	.	0,78,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	147	.	20	.	0.9251700680272108	.	A:0:C:0:G:136:T:0:N:0:O:11	.	66,77,70,70	69.237	1615.3	.	.	.	.	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:89:T:0:N:0:O:9	.	2,28,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:100:C:0:G:4:T:0:N:0:O:0	.	4,56,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,70,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23784	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:119:C:0:G:3:T:0:N:0:O:1	.	3,55,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.13978494623655913	.	A:0:C:80:G:0:T:13:N:0:O:0	.	0,71,13,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.04195804195804196	.	A:136:C:0:G:0:T:6:N:0:O:1	.	6,78,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:6:C:0:G:0:T:76:N:0:O:1	.	6,32,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:107:G:0:T:0:N:0:O:4	.	3,54,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:80:T:0:N:0:O:1	.	3,22,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.02469135802469136	.	A:2:C:0:G:77:T:1:N:0:O:1	.	2,22,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.060240963855421686	.	A:0:C:78:G:0:T:5:N:0:O:0	.	0,68,5,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.054545454545454536	.	A:0:C:49:G:0:T:3:N:0:O:3	.	0,48,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:86:T:0:N:0:O:1	.	4,25,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:77:T:0:N:0:O:2	.	4,18,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.02298850574712644	.	A:80:C:0:G:2:T:0:N:0:O:5	.	2,39,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:2:C:0:G:94:T:0:N:0:O:0	.	2,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24619	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:135:C:0:G:3:T:0:N:0:O:4	.	3,63,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:94:T:0:N:0:O:19	.	3,43,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.03883495145631068	.	A:98:C:0:G:4:T:0:N:0:O:1	.	4,38,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:117:T:3:N:0:O:0	.	3,51,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.020408163265306117	.	A:1:C:0:G:2:T:94:N:0:O:1	.	0,59,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	24982	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:2:G:0:T:34:N:0:O:0	.	2,26,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	25418	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.02985074626865672	.	A:0:C:64:G:0:T:2:N:0:O:1	.	1,22,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,30,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25423	G	T	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:98:T:2:N:0:O:2	.	0,58,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:0:T:2:N:0:O:0	.	2,48,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25515	C	A	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.02298850574712644	.	A:2:C:85:G:0:T:0:N:0:O:0	.	0,54,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25553	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:0:C:49:G:0:T:1:N:0:O:4	.	1,20,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	25554	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:82:N:0:O:1	.	0,39,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:2:T:78:N:0:O:5	.	2,38,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	0.9908256880733946	.	A:0:C:0:G:0:T:108:N:0:O:1	.	48,49,60,60	490.0	1845.7	.	.	.	.	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	25613	C	G	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.05	.	A:0:C:54:G:3:T:0:N:0:O:3	.	0,16,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.015037593984962403	.	A:2:C:79:G:0:T:0:N:0:O:52	.	2,40,0,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.09803921568627452	.	A:43:C:5:G:0:T:0:N:0:O:3	.	2,30,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.02985074626865672	.	A:61:C:0:G:0:T:2:N:0:O:4	.	0,54,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:0:T:98:N:0:O:0	.	3,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.03658536585365853	.	A:76:C:0:G:3:T:0:N:0:O:3	.	3,19,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25885	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.02298850574712644	.	A:2:C:0:G:0:T:85:N:0:O:0	.	2,40,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.06315789473684211	.	A:0:C:89:G:0:T:6:N:0:O:0	.	3,43,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00060	artic-pipeline	NB05	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:85:T:0:N:0:O:0	.	5,27,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	25980	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:61:C:0:G:2:T:0:N:0:O:9	.	2,38,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:98:C:0:G:2:T:0:N:0:O:3	.	2,41,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.02325581395348837	.	A:0:C:82:G:0:T:2:N:0:O:2	.	1,45,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:120:G:0:T:0:N:0:O:14	.	3,64,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	1,48,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26128	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:0:T:2:N:0:O:0	.	0,62,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:78:G:0:T:2:N:0:O:22	.	0,98,2,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,71,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,22,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.05729166666666665	.	A:0:C:181:G:0:T:11:N:0:O:0	.	0,139,11,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26561	T	A	T	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.013824884792626729	.	A:3:C:0:G:0:T:136:N:0:O:78	.	3,58,0,159	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.03448275862068965	.	A:1:C:2:G:0:T:53:N:0:O:2	.	1,21,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.020408163265306117	.	A:0:C:0:G:2:T:96:N:0:O:0	.	1,44,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168683	.	A:0:C:2:G:0:T:81:N:0:O:0	.	0,55,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:84:C:0:G:0:T:2:N:0:O:3	.	2,20,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:73:T:0:N:0:O:2	.	2,10,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:0:C:86:G:0:T:6:N:0:O:0	.	0,66,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:0:G:3:T:0:N:0:O:1	.	3,38,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.027272727272727268	.	A:0:C:105:G:0:T:3:N:0:O:2	.	0,66,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:113:C:0:G:0:T:3:N:0:O:2	.	2,74,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:92:C:0:G:4:T:0:N:0:O:9	.	4,58,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.05555555555555555	.	A:0:C:102:G:0:T:6:N:0:O:0	.	0,82,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	27154	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	2,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:86:G:0:T:0:N:0:O:1	.	4,43,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.03311258278145696	.	A:117:C:0:G:0:T:5:N:0:O:29	.	4,93,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.028571428571428567	.	A:3:C:0:G:101:T:0:N:0:O:1	.	3,33,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.029126213592233014	.	A:100:C:0:G:3:T:0:N:0:O:0	.	3,33,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28147	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086027	.	A:2:C:82:G:0:T:0:N:0:O:9	.	2,73,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882356	.	A:0:C:2:G:0:T:66:N:0:O:0	.	1,43,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:88:G:0:T:2:N:0:O:9	.	1,37,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28435	C	T	C	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0228310502283105	.	A:0:C:214:G:0:T:5:N:0:O:0	.	0,119,5,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28439	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.02366863905325444	.	A:0:C:162:G:0:T:4:N:0:O:3	.	0,135,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28491	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:85:G:0:T:1:N:0:O:12	.	0,51,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:3:G:0:T:76:N:0:O:0	.	0,54,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.02325581395348837	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,11,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:79:G:0:T:2:N:0:O:7	.	0,58,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.028571428571428567	.	A:34:C:1:G:0:T:0:N:0:O:0	.	1,3,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.040540540540540536	.	A:3:C:0:G:71:T:0:N:0:O:0	.	3,3,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.02083333333333333	.	A:2:C:0:G:93:T:0:N:0:O:1	.	1,39,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.02803738317757009	.	A:3:C:101:G:0:T:0:N:0:O:3	.	3,58,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:120:G:0:T:0:N:0:O:8	.	3,59,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:49:C:0:G:1:T:0:N:0:O:2	.	0,5,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,16,0,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00060	artic-pipeline	NB05	MN908947.3	29712	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	1,12,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	181	20	20	0.02040816326530612	0.0	A:1:C:0:G:0:T:43:N:0:O:5	A:0:C:0:G:0:T:181:N:0:O:0	0,8,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	181	20	20	0.05263157894736842	0.0	A:0:C:36:G:0:T:2:N:0:O:0	A:0:C:181:G:0:T:0:N:0:O:0	0,9,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	98	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	181	20	20	0.025	0.0	A:0:C:39:G:0:T:1:N:0:O:0	A:0:C:181:G:0:T:0:N:0:O:0	0,6,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	185	20	20	0.023809523809523808	0.0	A:0:C:1:G:0:T:40:N:0:O:1	A:0:C:0:G:0:T:185:N:0:O:0	0,10,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	189	20	20	0.029411764705882353	0.0	A:0:C:32:G:0:T:1:N:0:O:1	A:0:C:189:G:0:T:0:N:0:O:0	0,9,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	186	20	20	0.02040816326530612	0.0	A:1:C:0:G:48:T:0:N:0:O:0	A:0:C:0:G:186:T:0:N:0:O:0	1,6,0,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	211	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	185	20	20	0.023809523809523808	0.0	A:0:C:1:G:0:T:41:N:0:O:0	A:0:C:0:G:0:T:185:N:0:O:0	0,5,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	48	181	20	20	0.9583333333333334	1.0	A:0:C:0:G:0:T:46:N:0:O:2	A:0:C:0:G:0:T:181:N:0:O:0	7,9,39,39	69.237	1467.8	yes	.	.	.	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	316	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	181	20	20	0.02702702702702703	0.0	A:0:C:1:G:0:T:36:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	0,7,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	328	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	181	20	20	0.022222222222222223	0.0	A:44:C:0:G:1:T:0:N:0:O:0	A:181:C:0:G:0:T:0:N:0:O:0	0,9,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	181	20	20	0.02	0.0	A:0:C:1:G:0:T:49:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	0,12,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	426	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	193	20	20	0.03676470588235294	0.0	A:0:C:5:G:0:T:129:N:0:O:2	A:0:C:0:G:0:T:193:N:0:O:0	0,69,5,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	210	20	20	0.03896103896103896	0.0	A:0:C:3:G:0:T:72:N:0:O:2	A:0:C:0:G:0:T:210:N:0:O:0	3,16,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	209	20	20	0.021897810218978103	0.0	A:126:C:0:G:3:T:0:N:0:O:8	A:209:C:0:G:0:T:0:N:0:O:0	0,72,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	208	20	20	0.024793388429752067	0.0	A:0:C:3:G:0:T:116:N:0:O:2	A:0:C:0:G:0:T:208:N:0:O:0	0,65,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	835	C	G	C	16	ignore low frequency variant	Pass	False	False	True	93	212	20	20	0.03225806451612903	0.0	A:0:C:88:G:3:T:0:N:0:O:2	A:0:C:212:G:0:T:0:N:0:O:0	0,68,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	212	20	20	0.0392156862745098	0.0	A:0:C:96:G:0:T:4:N:0:O:2	A:0:C:212:G:0:T:0:N:0:O:0	0,61,4,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	915	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	204	20	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:204:C:0:G:0:T:0:N:0:O:0	2,38,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	189	20	20	0.022222222222222223	0.0	A:2:C:0:G:68:T:0:N:0:O:20	A:0:C:0:G:188:T:1:N:0:O:0	0,8,2,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1215	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	189	20	20	0.02040816326530612	0.0	A:0:C:0:G:1:T:48:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	1,45,0,4	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1338	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	91	20	20	0.023809523809523808	0.0	A:3:C:0:G:120:T:0:N:0:O:3	A:0:C:0:G:91:T:0:N:0:O:0	3,52,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	160	20	20	0.021897810218978103	0.0	A:134:C:0:G:0:T:3:N:0:O:0	A:160:C:0:G:0:T:0:N:0:O:0	3,60,0,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	138	160	20	20	0.028985507246376812	0.0	A:0:C:133:G:4:T:0:N:0:O:1	A:0:C:160:G:0:T:0:N:0:O:0	4,65,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	179	20	20	0.04201680672268908	0.0	A:0:C:113:G:0:T:5:N:0:O:1	A:0:C:179:G:0:T:0:N:0:O:0	0,70,5,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	135	20	20	0.02608695652173913	0.0	A:3:C:0:G:110:T:1:N:0:O:1	A:0:C:0:G:135:T:0:N:0:O:0	3,62,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1708	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	181	20	20	0.02	0.0	A:2:C:0:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:181:N:0:O:0	0,62,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	181	20	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:180:T:1:N:0:O:0	2,47,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	181	20	20	0.04918032786885246	0.0	A:58:C:0:G:3:T:0:N:0:O:0	A:181:C:0:G:0:T:0:N:0:O:0	1,8,2,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	181	20	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:181:T:0:N:0:O:0	0,25,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	2184	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	171	20	20	0.021052631578947368	0.0	A:91:C:0:G:2:T:0:N:0:O:2	A:171:C:0:G:0:T:0:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	171	20	20	0.033707865168539325	0.0	A:0:C:80:G:1:T:3:N:0:O:5	A:0:C:171:G:0:T:0:N:0:O:0	0,72,3,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	171	20	20	0.09523809523809523	0.0	A:8:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:170:T:1:N:0:O:0	8,24,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	2305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	303	20	20	0.022222222222222223	0.0	A:2:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:303:T:0:N:0:O:0	2,57,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	2314	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	317	20	20	0.021052631578947368	0.0	A:2:C:0:G:0:T:92:N:0:O:1	A:0:C:1:G:0:T:316:N:0:O:0	0,68,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	169	20	20	0.025423728813559324	0.0	A:0:C:114:G:0:T:3:N:0:O:1	A:0:C:169:G:0:T:0:N:0:O:0	0,103,3,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	2842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	169	20	20	0.021739130434782608	0.0	A:0:C:135:G:0:T:3:N:0:O:0	A:1:C:168:G:0:T:0:N:0:O:0	0,102,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	150	169	20	20	0.02	0.005917159763313609	A:0:C:3:G:0:T:145:N:0:O:2	A:0:C:1:G:0:T:168:N:0:O:0	0,111,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	3034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	184	20	20	0.022727272727272728	0.0	A:0:C:2:G:0:T:85:N:0:O:1	A:0:C:0:G:0:T:184:N:0:O:0	0,68,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	127	184	20	20	0.6377952755905512	1.0	A:0:C:0:G:0:T:81:N:0:O:46	A:0:C:0:G:0:T:184:N:0:O:0	47,93,34,34	52.424	1541.0	yes	.	.	.	mixed position	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	184	20	20	0.022222222222222223	0.0	A:0:C:0:G:73:T:2:N:0:O:15	A:0:C:0:G:184:T:0:N:0:O:0	0,68,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	140	160	20	20	0.02142857142857143	0.0	A:136:C:0:G:3:T:1:N:0:O:0	A:160:C:0:G:0:T:0:N:0:O:0	0,77,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	160	20	20	0.05511811023622047	0.0	A:0:C:118:G:0:T:7:N:0:O:2	A:0:C:160:G:0:T:0:N:0:O:0	1,69,6,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	160	20	20	0.028846153846153848	0.0	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:160:G:0:T:0:N:0:O:0	0,46,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	160	20	20	0.038461538461538464	0.0	A:49:C:0:G:2:T:0:N:0:O:1	A:160:C:0:G:0:T:0:N:0:O:0	0,2,2,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	3592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	174	20	20	0.022556390977443608	0.0	A:0:C:3:G:0:T:130:N:0:O:0	A:0:C:0:G:0:T:174:N:0:O:0	0,73,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	118	20	20	0.03571428571428571	0.0	A:3:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:118:T:0:N:0:O:0	0,49,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	118	20	20	0.02531645569620253	0.0	A:0:C:77:G:0:T:2:N:0:O:0	A:0:C:118:G:0:T:0:N:0:O:0	0,72,2,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	118	20	20	0.026785714285714284	0.0	A:106:C:0:G:3:T:0:N:0:O:3	A:118:C:0:G:0:T:0:N:0:O:0	3,40,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	118	20	20	0.02197802197802198	0.0	A:0:C:89:G:0:T:2:N:0:O:0	A:0:C:118:G:0:T:0:N:0:O:0	0,64,2,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4247	A	C	A	16	ignore low frequency variant	Pass	False	False	True	116	110	20	20	0.02586206896551724	0.0	A:111:C:3:G:0:T:0:N:0:O:2	A:110:C:0:G:0:T:0:N:0:O:0	3,42,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	110	20	20	0.01818181818181818	0.0	A:0:C:47:G:0:T:1:N:0:O:7	A:0:C:110:G:0:T:0:N:0:O:0	0,40,1,15	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	109	20	20	0.02	0.0	A:0:C:1:G:0:T:49:N:0:O:0	A:0:C:0:G:0:T:109:N:0:O:0	1,46,0,4	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	220	284	20	20	0.04090909090909091	0.0035211267605633804	A:0:C:0:G:194:T:9:N:0:O:17	A:0:C:0:G:283:T:1:N:0:O:0	0,178,9,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	194	284	20	20	0.020618556701030927	0.007042253521126761	A:0:C:0:G:164:T:4:N:0:O:26	A:0:C:0:G:282:T:2:N:0:O:0	0,173,4,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	199	284	20	20	0.020100502512562814	0.0	A:4:C:0:G:191:T:0:N:0:O:4	A:0:C:0:G:278:T:6:N:0:O:0	0,161,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	338	284	20	20	0.020710059171597635	0.0	A:324:C:0:G:1:T:7:N:0:O:6	A:284:C:0:G:0:T:0:N:0:O:0	1,168,6,170	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	146	174	20	20	0.03424657534246575	0.0	A:136:C:0:G:0:T:5:N:0:O:5	A:174:C:0:G:0:T:0:N:0:O:0	0,77,5,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	4818	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	175	20	20	0.02531645569620253	0.0	A:2:C:0:G:77:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	2,69,0,10	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	50	20	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:50:G:0:T:0:N:0:O:0	0,62,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	50	20	20	0.021505376344086023	0.0	A:91:C:0:G:0:T:2:N:0:O:0	A:50:C:0:G:0:T:0:N:0:O:0	2,21,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	171	20	20	0.10294117647058823	0.0	A:0:C:61:G:0:T:7:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,56,7,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	171	20	20	0.03389830508474576	0.0	A:0:C:4:G:0:T:106:N:0:O:8	A:0:C:0:G:0:T:171:N:0:O:0	0,74,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	225	20	20	0.02127659574468085	0.0	A:0:C:89:G:0:T:2:N:0:O:3	A:4:C:221:G:0:T:0:N:0:O:0	0,74,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	228	20	20	0.14893617021276595	0.0	A:0:C:78:G:0:T:14:N:0:O:2	A:0:C:228:G:0:T:0:N:0:O:0	0,62,14,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	228	20	20	0.020833333333333332	0.0	A:0:C:94:G:0:T:2:N:0:O:0	A:0:C:228:G:0:T:0:N:0:O:0	0,47,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	226	20	20	0.030303030303030304	0.0	A:0:C:94:G:0:T:3:N:0:O:2	A:2:C:224:G:0:T:0:N:0:O:0	3,54,0,45	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	179	20	20	0.02631578947368421	0.0	A:0:C:106:G:1:T:3:N:0:O:4	A:3:C:176:G:0:T:0:N:0:O:0	1,72,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	39	20	20	0.044642857142857144	0.0	A:0:C:107:G:0:T:5:N:0:O:0	A:0:C:39:G:0:T:0:N:0:O:0	0,70,5,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	39	20	20	0.02857142857142857	0.0	A:0:C:0:G:3:T:98:N:0:O:4	A:0:C:1:G:0:T:38:N:0:O:0	0,60,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	209	34	20	20	0.03349282296650718	0.0	A:197:C:0:G:7:T:1:N:0:O:4	A:34:C:0:G:0:T:0:N:0:O:0	7,86,0,123	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	203	34	20	20	0.024630541871921183	0.0	A:0:C:193:G:0:T:5:N:0:O:5	A:0:C:34:G:0:T:0:N:0:O:0	0,127,5,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	49	20	20	0.023255813953488372	0.0	A:2:C:0:G:83:T:0:N:0:O:1	A:0:C:0:G:49:T:0:N:0:O:0	2,26,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	49	20	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:49:N:0:O:0	1,34,1,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	36	20	20	0.043478260869565216	0.0	A:86:C:0:G:0:T:4:N:0:O:2	A:36:C:0:G:0:T:0:N:0:O:0	0,64,4,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	7252	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	161	20	20	0.024793388429752067	0.0	A:0:C:0:G:118:T:3:N:0:O:0	A:0:C:0:G:161:T:0:N:0:O:0	0,68,3,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	8131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	298	20	20	0.02586206896551724	0.0	A:3:C:0:G:113:T:0:N:0:O:0	A:0:C:0:G:294:T:3:N:0:O:1	3,33,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	128	20	20	0.045454545454545456	0.0	A:3:C:0:G:61:T:0:N:0:O:2	A:0:C:0:G:128:T:0:N:0:O:0	3,7,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	166	20	20	0.031578947368421054	0.006024096385542169	A:3:C:0:G:0:T:91:N:0:O:1	A:1:C:0:G:0:T:165:N:0:O:0	3,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	9495	T	A	T	16	ignore low frequency variant	Pass	False	False	True	124	164	20	20	0.03225806451612903	0.0	A:4:C:0:G:0:T:119:N:0:O:1	A:0:C:0:G:0:T:164:N:0:O:0	0,64,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	9729	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	137	20	20	0.024793388429752067	0.0	A:3:C:0:G:118:T:0:N:0:O:0	A:0:C:0:G:136:T:1:N:0:O:0	3,53,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	185	20	20	0.025974025974025976	0.005405405405405406	A:2:C:0:G:74:T:0:N:0:O:1	A:1:C:0:G:184:T:0:N:0:O:0	2,18,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	185	20	20	0.02127659574468085	0.0	A:0:C:82:G:0:T:2:N:0:O:10	A:1:C:184:G:0:T:0:N:0:O:0	2,29,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	10469	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	246	20	20	0.02564102564102564	0.0	A:0:C:3:G:0:T:114:N:0:O:0	A:1:C:0:G:0:T:244:N:0:O:1	0,70,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	249	20	20	0.02830188679245283	0.0	A:102:C:0:G:3:T:0:N:0:O:1	A:249:C:0:G:0:T:0:N:0:O:0	3,44,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	10606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	249	20	20	0.02	0.0	A:0:C:1:G:0:T:49:N:0:O:0	A:0:C:0:G:0:T:249:N:0:O:0	0,46,1,4	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	195	20	20	0.0392156862745098	0.0	A:0:C:98:G:0:T:4:N:0:O:0	A:1:C:194:G:0:T:0:N:0:O:0	0,69,4,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	193	20	20	0.038461538461538464	0.0	A:0:C:0:G:4:T:97:N:0:O:3	A:0:C:0:G:0:T:193:N:0:O:0	0,57,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	11001	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	179	20	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:179:G:0:T:0:N:0:O:0	2,37,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	11082	T	G	T	16	ignore low frequency variant	Pass	False	False	True	26	156	20	20	0.038461538461538464	0.0	A:0:C:0:G:1:T:24:N:0:O:1	A:0:C:0:G:0:T:156:N:0:O:0	0,8,1,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	60	20	20	0.09411764705882353	0.0	A:0:C:76:G:0:T:8:N:0:O:1	A:0:C:60:G:0:T:0:N:0:O:0	0,58,8,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	12110	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	174	20	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:174:C:0:G:0:T:0:N:0:O:0	2,38,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	174	20	20	0.020618556701030927	0.0	A:0:C:94:G:0:T:2:N:0:O:1	A:2:C:172:G:0:T:0:N:0:O:0	2,51,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	12333	C	G	C	16	ignore low frequency variant	Pass	False	False	True	153	154	20	20	0.0196078431372549	0.0	A:1:C:117:G:3:T:0:N:0:O:32	A:0:C:153:G:0:T:0:N:0:O:1	2,74,1,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	106	152	20	20	0.02830188679245283	0.0	A:103:C:3:G:0:T:0:N:0:O:0	A:152:C:0:G:0:T:0:N:0:O:0	2,65,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	153	20	20	0.02247191011235955	0.0	A:2:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:152:T:1:N:0:O:0	2,23,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	245	257	20	20	0.024489795918367346	0.0	A:6:C:0:G:239:T:0:N:0:O:0	A:0:C:0:G:257:T:0:N:0:O:0	6,90,0,155	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	120	20	20	0.021739130434782608	0.0	A:128:C:0:G:3:T:0:N:0:O:7	A:120:C:0:G:0:T:0:N:0:O:0	3,40,0,98	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	120	20	20	0.03508771929824561	0.0	A:0:C:110:G:0:T:4:N:0:O:0	A:0:C:120:G:0:T:0:N:0:O:0	0,70,4,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	91	20	20	0.043478260869565216	0.0	A:0:C:65:G:0:T:3:N:0:O:1	A:0:C:91:G:0:T:0:N:0:O:0	0,62,3,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	91	20	20	0.028985507246376812	0.0	A:1:C:66:G:0:T:2:N:0:O:0	A:1:C:90:G:0:T:0:N:0:O:0	0,46,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	173	20	20	0.02702702702702703	0.0	A:3:C:0:G:100:T:0:N:0:O:8	A:0:C:0:G:173:T:0:N:0:O:0	3,28,0,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	173	20	20	0.07291666666666667	0.0	A:7:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	7,30,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	174	20	20	0.045454545454545456	0.0	A:5:C:0:G:105:T:0:N:0:O:0	A:0:C:0:G:173:T:1:N:0:O:0	5,42,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	174	20	20	0.0423728813559322	0.005747126436781609	A:0:C:0:G:113:T:5:N:0:O:0	A:0:C:0:G:173:T:1:N:0:O:0	5,53,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	194	20	20	0.018691588785046728	0.0	A:0:C:93:G:0:T:2:N:0:O:12	A:0:C:194:G:0:T:0:N:0:O:0	0,77,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	96	194	20	20	1.0	0.9948453608247423	A:0:C:0:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:193:N:0:O:1	53,53,43,43	263.033	1278.4	yes	.	.	.	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	194	20	20	0.021739130434782608	0.0	A:2:C:90:G:0:T:0:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,66,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	194	20	20	0.02127659574468085	0.0	A:0:C:92:G:0:T:2:N:0:O:0	A:1:C:193:G:0:T:0:N:0:O:0	0,68,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	185	20	20	0.030303030303030304	0.0	A:0:C:96:G:0:T:3:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,67,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	185	20	20	0.03409090909090909	0.0	A:0:C:85:G:0:T:3:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,57,3,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	14961	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	143	20	20	0.022388059701492536	0.0	A:0:C:3:G:0:T:129:N:0:O:2	A:0:C:0:G:0:T:143:N:0:O:0	1,70,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	15422	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	176	20	20	0.02127659574468085	0.0	A:90:C:0:G:1:T:2:N:0:O:1	A:176:C:0:G:0:T:0:N:0:O:0	0,51,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	176	20	20	0.03260869565217391	0.0	A:89:C:0:G:3:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	0,50,3,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	176	20	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:103:N:0:O:0	A:0:C:0:G:0:T:176:N:0:O:0	0,68,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	15671	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	182	20	20	0.022556390977443608	0.0	A:130:C:0:G:3:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	3,61,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	179	20	20	0.1016949152542373	0.0	A:0:C:53:G:0:T:6:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	0,31,6,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	179	20	20	0.043478260869565216	0.0	A:0:C:110:G:0:T:5:N:0:O:0	A:1:C:178:G:0:T:0:N:0:O:0	0,73,5,42	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	29	20	20	0.035398230088495575	0.0	A:0:C:0:G:108:T:4:N:0:O:1	A:0:C:0:G:29:T:0:N:0:O:0	4,51,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	22	20	20	0.049019607843137254	0.0	A:5:C:0:G:94:T:0:N:0:O:3	A:0:C:0:G:22:T:0:N:0:O:0	5,15,0,87	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	16752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	22	20	20	0.022556390977443608	0.0	A:0:C:3:G:0:T:129:N:0:O:1	A:0:C:0:G:0:T:22:N:0:O:0	2,75,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	209	20	20	0.028037383177570093	0.0	A:0:C:0:G:3:T:102:N:0:O:2	A:0:C:4:G:0:T:205:N:0:O:0	0,68,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	208	20	20	0.022988505747126436	0.0	A:85:C:0:G:2:T:0:N:0:O:0	A:208:C:0:G:0:T:0:N:0:O:0	0,45,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	16853	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	209	20	20	0.025	0.0	A:2:C:0:G:78:T:0:N:0:O:0	A:0:C:0:G:209:T:0:N:0:O:0	0,17,2,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	16854	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	209	20	20	0.02654867256637168	0.0	A:1:C:0:G:3:T:109:N:0:O:0	A:0:C:0:G:0:T:209:N:0:O:0	0,50,3,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	16875	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	209	20	20	0.034782608695652174	0.0	A:0:C:4:G:0:T:111:N:0:O:0	A:0:C:0:G:0:T:209:N:0:O:0	0,60,4,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	208	20	20	0.02127659574468085	0.0	A:46:C:0:G:1:T:0:N:0:O:0	A:208:C:0:G:0:T:0:N:0:O:0	1,6,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	144	20	20	0.05	0.0	A:76:C:0:G:4:T:0:N:0:O:0	A:144:C:0:G:0:T:0:N:0:O:0	4,17,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	144	20	20	0.060240963855421686	0.0	A:5:C:0:G:0:T:77:N:0:O:1	A:0:C:0:G:0:T:144:N:0:O:0	5,19,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	156	20	20	0.021505376344086023	0.0	A:90:C:2:G:0:T:0:N:0:O:1	A:155:C:0:G:1:T:0:N:0:O:0	2,34,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	156	20	20	0.08860759493670886	0.0	A:0:C:71:G:0:T:7:N:0:O:1	A:0:C:156:G:0:T:0:N:0:O:0	0,58,7,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	156	20	20	0.0297029702970297	0.0	A:3:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:156:T:0:N:0:O:0	3,30,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	156	20	20	0.04	0.0	A:0:C:96:G:0:T:4:N:0:O:0	A:0:C:156:G:0:T:0:N:0:O:0	0,58,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	156	20	20	0.06521739130434782	0.0	A:0:C:81:G:0:T:6:N:0:O:5	A:0:C:156:G:0:T:0:N:0:O:0	0,51,6,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	329	20	20	0.023076923076923078	0.0	A:0:C:123:G:0:T:3:N:0:O:4	A:0:C:329:G:0:T:0:N:0:O:0	0,97,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	179	20	20	0.06481481481481481	0.0	A:7:C:0:G:101:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	0,65,7,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	179	20	20	0.03488372093023256	0.0	A:79:C:0:G:3:T:0:N:0:O:4	A:179:C:0:G:0:T:0:N:0:O:0	3,20,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	179	20	20	0.041666666666666664	0.0	A:3:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	3,15,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18119	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	227	20	20	0.020618556701030927	0.0	A:0:C:2:G:0:T:94:N:0:O:1	A:0:C:0:G:0:T:227:N:0:O:0	1,62,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18245	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	225	20	20	0.027210884353741496	0.0	A:126:C:0:G:0:T:4:N:0:O:17	A:225:C:0:G:0:T:0:N:0:O:0	4,79,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	196	20	20	0.045454545454545456	0.0	A:0:C:0:G:5:T:104:N:0:O:1	A:0:C:0:G:0:T:196:N:0:O:0	4,37,1,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18675	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	172	20	20	0.02608695652173913	0.0	A:112:C:0:G:3:T:0:N:0:O:0	A:172:C:0:G:0:T:0:N:0:O:0	3,52,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18731	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	172	20	20	0.02	0.0	A:2:C:1:G:0:T:96:N:0:O:1	A:0:C:0:G:0:T:172:N:0:O:0	2,38,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	32	172	20	20	0.03125	0.0	A:29:C:0:G:0:T:1:N:0:O:2	A:172:C:0:G:0:T:0:N:0:O:0	0,16,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	86	172	20	20	0.03488372093023256	0.0	A:0:C:0:G:3:T:83:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:0	3,32,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	18798	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	172	20	20	0.020833333333333332	0.0	A:94:C:0:G:2:T:0:N:0:O:0	A:172:C:0:G:0:T:0:N:0:O:0	0,52,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19043	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	246	20	20	0.02666666666666667	0.0	A:0:C:146:G:0:T:4:N:0:O:0	A:0:C:246:G:0:T:0:N:0:O:0	4,59,0,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19044	T	A	T	16	ignore low frequency variant	Pass	False	False	True	201	246	20	20	0.01990049751243781	0.0	A:4:C:0:G:0:T:187:N:0:O:10	A:0:C:0:G:0:T:246:N:0:O:0	4,108,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	9	20	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:0:N:0:O:1	A:9:C:0:G:0:T:0:N:0:O:0	2,30,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	9	20	20	0.029411764705882353	0.0	A:3:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:9:T:0:N:0:O:0	3,35,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	7	20	20	0.09859154929577464	0.0	A:0:C:63:G:0:T:7:N:0:O:1	A:0:C:7:G:0:T:0:N:0:O:0	0,53,7,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	5	20	20	0.028846153846153848	0.0	A:3:C:0:G:99:T:0:N:0:O:2	A:0:C:0:G:5:T:0:N:0:O:0	3,39,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	198	20	20	0.030303030303030304	0.0	A:0:C:3:G:0:T:94:N:0:O:2	A:0:C:0:G:0:T:198:N:0:O:0	0,59,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19839	T	C	C	17	accept high frequency variant	Pass	False	True	True	131	164	20	20	1.0	1.0	A:0:C:131:G:0:T:0:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	64,64,67,67	63.216	1144.8	yes	.	.	.	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	19947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	189	20	20	0.019230769230769232	0.0	A:2:C:0:G:95:T:0:N:0:O:7	A:0:C:0:G:188:T:1:N:0:O:0	0,28,2,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	65	303	20	20	0.03076923076923077	0.0	A:0:C:0:G:2:T:63:N:0:O:0	A:0:C:0:G:0:T:303:N:0:O:0	0,32,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	20207	A	C	A	16	ignore low frequency variant	Pass	False	False	True	246	221	20	20	0.02032520325203252	0.0	A:222:C:5:G:0:T:1:N:0:O:18	A:221:C:0:G:0:T:0:N:0:O:0	5,115,0,131	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	20459	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	45	20	20	0.03333333333333333	0.0	A:0:C:4:G:0:T:113:N:0:O:3	A:0:C:0:G:0:T:45:N:0:O:0	0,63,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	172	316	20	20	0.023255813953488372	0.0	A:4:C:165:G:0:T:0:N:0:O:3	A:0:C:316:G:0:T:0:N:0:O:0	0,68,4,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	191	20	20	0.019801980198019802	0.0	A:0:C:97:G:0:T:2:N:0:O:2	A:0:C:191:G:0:T:0:N:0:O:0	0,52,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	191	20	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:191:T:0:N:0:O:0	2,29,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	190	20	20	0.03076923076923077	0.0	A:63:C:0:G:2:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	1,4,1,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	191	20	20	0.02912621359223301	0.015706806282722512	A:3:C:0:G:91:T:0:N:0:O:9	A:3:C:0:G:187:T:1:N:0:O:0	2,20,1,83	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	189	20	20	0.03389830508474576	0.0	A:0:C:0:G:2:T:57:N:0:O:0	A:0:C:0:G:0:T:189:N:0:O:0	2,13,0,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	8	20	20	0.09473684210526316	0.0	A:0:C:0:G:76:T:9:N:0:O:10	A:0:C:0:G:8:T:0:N:0:O:0	0,63,9,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	14	20	20	0.04672897196261682	0.0	A:0:C:100:G:0:T:5:N:0:O:2	A:0:C:14:G:0:T:0:N:0:O:0	0,64,5,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	17	20	20	0.044642857142857144	0.0	A:0:C:106:G:0:T:5:N:0:O:1	A:0:C:17:G:0:T:0:N:0:O:0	0,65,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	66	13	20	20	0.015151515151515152	0.0	A:1:C:0:G:0:T:46:N:0:O:19	A:0:C:0:G:0:T:13:N:0:O:0	0,49,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	13	20	20	0.020202020202020204	0.0	A:0:C:95:G:0:T:2:N:0:O:2	A:0:C:13:G:0:T:0:N:0:O:0	0,66,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	46	20	20	0.04938271604938271	0.0	A:4:C:0:G:75:T:0:N:0:O:2	A:0:C:0:G:46:T:0:N:0:O:0	4,16,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	53	20	20	0.01834862385321101	0.0	A:1:C:2:G:0:T:86:N:0:O:20	A:0:C:0:G:0:T:53:N:0:O:0	0,90,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	195	20	20	0.02564102564102564	0.0	A:0:C:72:G:0:T:2:N:0:O:4	A:2:C:193:G:0:T:0:N:0:O:0	2,25,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21896	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	195	20	20	0.03571428571428571	0.0	A:0:C:4:G:0:T:108:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	0,62,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	21897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	195	20	20	0.036036036036036036	0.0	A:0:C:97:G:0:T:4:N:0:O:10	A:8:C:187:G:0:T:0:N:0:O:0	0,61,4,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	165	182	20	20	0.030303030303030304	0.0	A:5:C:0:G:159:T:0:N:0:O:1	A:0:C:0:G:181:T:1:N:0:O:0	5,96,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	171	182	20	20	0.04093567251461988	0.0	A:0:C:0:G:7:T:163:N:0:O:1	A:0:C:0:G:0:T:182:N:0:O:0	7,67,0,104	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	182	20	20	0.021164021164021163	0.0	A:0:C:181:G:0:T:4:N:0:O:4	A:0:C:182:G:0:T:0:N:0:O:0	1,131,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	16	20	20	0.02127659574468085	0.0	A:0:C:46:G:0:T:1:N:0:O:0	A:0:C:16:G:0:T:0:N:0:O:0	0,37,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	22337	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	16	20	20	0.020833333333333332	0.0	A:47:C:0:G:1:T:0:N:0:O:0	A:16:C:0:G:0:T:0:N:0:O:0	1,38,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22418	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	22	20	20	0.02	0.0	A:49:C:0:G:1:T:0:N:0:O:0	A:22:C:0:G:0:T:0:N:0:O:0	1,34,0,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22438	A	C	A	16	ignore low frequency variant	Pass	False	False	True	46	22	20	20	0.021739130434782608	0.0	A:44:C:1:G:0:T:0:N:0:O:1	A:22:C:0:G:0:T:0:N:0:O:0	1,24,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	22	20	20	0.022222222222222223	0.0	A:44:C:0:G:1:T:0:N:0:O:0	A:22:C:0:G:0:T:0:N:0:O:0	1,27,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	54	22	20	20	0.018518518518518517	0.0	A:1:C:0:G:42:T:0:N:0:O:11	A:0:C:0:G:21:T:1:N:0:O:0	1,26,0,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	42	21	20	20	0.023809523809523808	0.0	A:0:C:0:G:1:T:39:N:0:O:2	A:0:C:0:G:0:T:21:N:0:O:0	1,16,0,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	201	179	20	20	0.01990049751243781	0.0	A:0:C:0:G:4:T:169:N:0:O:28	A:0:C:0:G:0:T:179:N:0:O:0	0,108,4,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	208	176	20	20	0.02403846153846154	0.0	A:0:C:5:G:0:T:203:N:0:O:0	A:0:C:0:G:0:T:176:N:0:O:0	0,127,5,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	132	148	20	20	0.9318181818181818	1.0	A:0:C:0:G:123:T:0:N:0:O:9	A:0:C:0:G:148:T:0:N:0:O:0	61,70,62,62	279.237	1591.2	yes	.	.	.	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	177	20	20	0.0196078431372549	0.0	A:97:C:0:G:2:T:0:N:0:O:3	A:177:C:0:G:0:T:0:N:0:O:0	2,38,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	176	20	20	0.019801980198019802	0.0	A:0:C:2:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:176:N:0:O:0	0,65,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	23579	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	176	20	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:1:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	2,50,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	146	20	20	0.028846153846153848	0.0	A:100:C:0:G:3:T:0:N:0:O:1	A:146:C:0:G:0:T:0:N:0:O:0	3,30,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	146	20	20	0.045454545454545456	0.0	A:0:C:105:G:0:T:5:N:0:O:0	A:0:C:146:G:0:T:0:N:0:O:0	0,81,5,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	146	20	20	0.03361344537815126	0.0	A:0:C:4:G:0:T:115:N:0:O:0	A:0:C:0:G:0:T:146:N:0:O:0	0,84,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	146	20	20	0.023809523809523808	0.0	A:2:C:0:G:79:T:0:N:0:O:3	A:0:C:0:G:145:T:1:N:0:O:0	2,19,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	146	20	20	0.03669724770642202	0.0	A:0:C:105:G:0:T:4:N:0:O:0	A:1:C:145:G:0:T:0:N:0:O:0	0,74,4,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	152	20	20	0.03488372093023256	0.0	A:0:C:68:G:0:T:3:N:0:O:15	A:0:C:152:G:0:T:0:N:0:O:0	0,72,3,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	152	20	20	0.024096385542168676	0.0	A:2:C:0:G:80:T:0:N:0:O:1	A:0:C:0:G:149:T:3:N:0:O:0	2,16,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	152	20	20	0.02247191011235955	0.0	A:2:C:0:G:82:T:0:N:0:O:5	A:0:C:0:G:152:T:0:N:0:O:0	2,22,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24320	C	A	C	16	ignore low frequency variant	Pass	False	False	True	156	152	20	20	0.02564102564102564	0.006578947368421052	A:4:C:121:G:0:T:0:N:0:O:31	A:1:C:150:G:0:T:1:N:0:O:0	2,76,2,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	169	20	20	0.04316546762589928	0.0	A:3:C:123:G:0:T:6:N:0:O:7	A:0:C:169:G:0:T:0:N:0:O:0	0,70,6,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	162	170	20	20	0.018518518518518517	0.0	A:143:C:0:G:0:T:3:N:0:O:16	A:169:C:0:G:0:T:0:N:0:O:1	3,109,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24656	T	A	T	16	ignore low frequency variant	Pass	False	False	True	157	169	20	20	0.01910828025477707	0.0	A:3:C:0:G:1:T:146:N:0:O:7	A:0:C:0:G:0:T:169:N:0:O:0	0,98,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	133	169	20	20	0.03007518796992481	0.0	A:129:C:4:G:0:T:0:N:0:O:0	A:169:C:0:G:0:T:0:N:0:O:0	4,57,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	169	20	20	0.02459016393442623	0.0	A:0:C:118:G:0:T:3:N:0:O:1	A:1:C:168:G:0:T:0:N:0:O:0	1,82,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	166	20	20	0.016129032258064516	0.0	A:2:C:0:G:97:T:0:N:0:O:25	A:0:C:0:G:163:T:2:N:0:O:1	2,44,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	165	20	20	0.0196078431372549	0.0	A:2:C:0:G:98:T:0:N:0:O:2	A:0:C:0:G:165:T:0:N:0:O:0	0,61,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	165	20	20	0.038461538461538464	0.0	A:0:C:0:G:4:T:99:N:0:O:1	A:1:C:0:G:0:T:164:N:0:O:0	0,64,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	34	165	20	20	0.029411764705882353	0.0	A:0:C:1:G:0:T:33:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	1,20,0,14	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	25125	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	188	20	20	0.024793388429752067	0.0	A:117:C:0:G:3:T:0:N:0:O:1	A:188:C:0:G:0:T:0:N:0:O:0	3,50,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	188	20	20	0.025210084033613446	0.0	A:0:C:110:G:0:T:3:N:0:O:6	A:1:C:187:G:0:T:0:N:0:O:0	0,67,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	188	20	20	0.02040816326530612	0.0	A:2:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:186:T:2:N:0:O:0	2,30,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	184	20	20	0.02564102564102564	0.0	A:1:C:3:G:0:T:112:N:0:O:1	A:0:C:0:G:0:T:184:N:0:O:0	0,66,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	154	20	20	0.020618556701030927	0.0	A:89:C:0:G:2:T:0:N:0:O:6	A:153:C:0:G:0:T:1:N:0:O:0	2,22,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	154	20	20	0.03636363636363636	0.0	A:105:C:0:G:0:T:4:N:0:O:1	A:154:C:0:G:0:T:0:N:0:O:0	4,50,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	154	20	20	0.020833333333333332	0.0	A:0:C:0:G:2:T:92:N:0:O:2	A:0:C:0:G:0:T:154:N:0:O:0	2,40,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25560	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	154	20	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	2,35,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	154	20	20	0.02727272727272727	0.0	A:3:C:103:G:0:T:0:N:0:O:4	A:0:C:154:G:0:T:0:N:0:O:0	3,56,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	162	20	20	0.021505376344086023	0.006172839506172839	A:0:C:81:G:0:T:2:N:0:O:10	A:0:C:161:G:0:T:1:N:0:O:0	0,79,2,14	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	120	162	20	20	0.041666666666666664	0.012345679012345678	A:5:C:74:G:0:T:0:N:0:O:41	A:2:C:160:G:0:T:0:N:0:O:0	3,29,2,91	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	59	162	20	20	0.06779661016949153	0.0	A:54:C:4:G:0:T:0:N:0:O:1	A:162:C:0:G:0:T:0:N:0:O:0	1,35,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	162	20	20	0.025	0.0	A:75:C:1:G:0:T:2:N:0:O:2	A:162:C:0:G:0:T:0:N:0:O:0	0,52,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	162	20	20	0.02727272727272727	0.0	A:104:C:0:G:3:T:0:N:0:O:3	A:162:C:0:G:0:T:0:N:0:O:0	3,43,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	162	20	20	0.0392156862745098	0.0	A:97:C:0:G:4:T:0:N:0:O:1	A:162:C:0:G:0:T:0:N:0:O:0	4,31,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	162	20	20	0.023255813953488372	0.0	A:78:C:0:G:2:T:0:N:0:O:6	A:162:C:0:G:0:T:0:N:0:O:0	2,23,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25885	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	162	20	20	0.03260869565217391	0.0	A:3:C:0:G:0:T:88:N:0:O:1	A:0:C:0:G:0:T:162:N:0:O:0	3,42,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	162	20	20	0.03333333333333333	0.0	A:0:C:84:G:0:T:3:N:0:O:3	A:0:C:162:G:0:T:0:N:0:O:0	3,46,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	176	330	20	20	0.022727272727272728	0.0	A:171:C:0:G:4:T:0:N:0:O:1	A:329:C:0:G:0:T:1:N:0:O:0	0,127,4,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26009	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	190	20	20	0.039603960396039604	0.0	A:97:C:0:G:4:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	4,46,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26094	T	A	T	16	ignore low frequency variant	Pass	False	False	True	115	334	20	20	0.02608695652173913	0.0	A:3:C:0:G:0:T:106:N:0:O:6	A:0:C:0:G:0:T:334:N:0:O:0	0,72,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	334	20	20	0.02531645569620253	0.0	A:2:C:0:G:76:T:0:N:0:O:1	A:0:C:0:G:329:T:5:N:0:O:0	2,8,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26154	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	334	20	20	0.031914893617021274	0.0	A:81:C:0:G:3:T:0:N:0:O:10	A:334:C:0:G:0:T:0:N:0:O:0	3,32,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	186	20	20	0.030303030303030304	0.0	A:0:C:87:G:0:T:4:N:0:O:41	A:0:C:186:G:0:T:0:N:0:O:0	0,101,4,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	186	20	20	0.022727272727272728	0.0	A:0:C:1:G:0:T:43:N:0:O:0	A:0:C:0:G:0:T:186:N:0:O:0	0,42,1,2	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	186	20	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:186:G:0:T:0:N:0:O:0	0,61,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	324	20	20	0.03608247422680412	0.0	A:0:C:186:G:0:T:7:N:0:O:1	A:0:C:324:G:0:T:0:N:0:O:0	0,151,7,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26600	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	157	20	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:1:C:156:G:0:T:0:N:0:O:0	2,58,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	157	20	20	0.02857142857142857	0.006369426751592357	A:0:C:2:G:0:T:67:N:0:O:1	A:0:C:1:G:0:T:156:N:0:O:0	1,24,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	157	20	20	0.03773584905660377	0.0	A:99:C:0:G:0:T:4:N:0:O:3	A:157:C:0:G:0:T:0:N:0:O:0	4,25,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	157	20	20	0.05319148936170213	0.0	A:5:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	5,10,0,84	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	26746	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	157	20	20	0.029850746268656716	0.012738853503184714	A:0:C:0:G:130:T:4:N:0:O:0	A:0:C:0:G:155:T:2:N:0:O:0	0,86,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	157	20	20	0.043478260869565216	0.0	A:0:C:109:G:0:T:5:N:0:O:1	A:1:C:156:G:0:T:0:N:0:O:0	0,84,5,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27074	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	169	20	20	0.023255813953488372	0.0	A:0:C:0:G:84:T:2:N:0:O:0	A:0:C:0:G:169:T:0:N:0:O:0	1,40,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27075	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	169	20	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:169:G:0:T:0:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	169	20	20	0.03488372093023256	0.005917159763313609	A:82:C:0:G:3:T:0:N:0:O:1	A:168:C:0:G:1:T:0:N:0:O:0	3,24,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	169	20	20	0.028985507246376812	0.0	A:2:C:0:G:67:T:0:N:0:O:0	A:0:C:0:G:169:T:0:N:0:O:0	2,14,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	169	20	20	0.13333333333333333	0.0	A:0:C:77:G:0:T:12:N:0:O:1	A:0:C:169:G:0:T:0:N:0:O:0	0,61,12,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	166	20	20	0.02247191011235955	0.0	A:2:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:166:T:0:N:0:O:0	2,25,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	199	214	20	20	0.020100502512562814	0.0	A:191:C:0:G:1:T:4:N:0:O:3	A:214:C:0:G:0:T:0:N:0:O:0	2,69,2,130	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	76	20	20	0.0196078431372549	0.0	A:0:C:95:G:0:T:2:N:0:O:5	A:0:C:76:G:0:T:0:N:0:O:0	0,54,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	72	20	20	0.024096385542168676	0.0	A:2:C:0:G:80:T:0:N:0:O:1	A:0:C:0:G:72:T:0:N:0:O:0	2,14,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	28586	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	161	20	20	0.02459016393442623	0.0	A:119:C:0:G:3:T:0:N:0:O:0	A:161:C:0:G:0:T:0:N:0:O:0	3,53,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	28697	C	A	C	16	ignore low frequency variant	Pass	False	False	True	79	161	20	20	0.02531645569620253	0.0	A:2:C:77:G:0:T:0:N:0:O:0	A:0:C:161:G:0:T:0:N:0:O:0	2,25,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	161	20	20	0.022727272727272728	0.012422360248447204	A:3:C:96:G:0:T:0:N:0:O:33	A:2:C:159:G:0:T:0:N:0:O:0	3,69,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	28833	C	T	T	13	new position validated by illumina	Pass	False	True	True	117	185	20	20	0.9145299145299145	1.0	A:0:C:1:G:0:T:107:N:0:O:9	A:0:C:0:G:0:T:185:N:0:O:0	59,67,48,50	140.0	1112.0	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	130	185	20	20	0.9923076923076923	0.9945945945945946	A:129:C:0:G:0:T:0:N:0:O:1	A:184:C:0:G:0:T:0:N:0:O:1	65,66,64,64	203.216	2336.9	yes	.	.	.	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	117	185	20	20	0.9914529914529915	0.9945945945945946	A:116:C:0:G:0:T:0:N:0:O:1	A:184:C:0:G:0:T:0:N:0:O:1	52,53,64,64	203.216	2336.9	yes	.	.	.	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	127	185	20	20	0.984251968503937	0.9945945945945946	A:0:C:125:G:0:T:1:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:1	62,63,63,64	203.216	2336.9	yes	.	.	.	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	185	20	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:184:G:0:T:0:N:0:O:1	0,61,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	185	20	20	0.023529411764705882	0.0	A:0:C:81:G:0:T:2:N:0:O:2	A:0:C:184:G:0:T:0:N:0:O:1	0,51,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	189	20	20	0.05263157894736842	0.0	A:4:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	4,4,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	189	20	20	0.021052631578947368	0.0	A:2:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:188:T:1:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	189	20	20	0.019230769230769232	0.0	A:0:C:98:G:0:T:2:N:0:O:4	A:0:C:189:G:0:T:0:N:0:O:0	1,36,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	189	20	20	0.022222222222222223	0.0	A:88:C:0:G:2:T:0:N:0:O:0	A:189:C:0:G:0:T:0:N:0:O:0	1,31,1,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29362	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	68	20	20	0.025974025974025976	0.0	A:0:C:148:G:0:T:4:N:0:O:2	A:0:C:68:G:0:T:0:N:0:O:0	4,90,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	68	20	20	0.045454545454545456	0.0	A:41:C:0:G:2:T:0:N:0:O:1	A:68:C:0:G:0:T:0:N:0:O:0	1,6,1,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	68	20	20	0.03225806451612903	0.0	A:115:C:0:G:4:T:0:N:0:O:5	A:68:C:0:G:0:T:0:N:0:O:0	4,32,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	68	20	20	0.028169014084507043	0.0	A:4:C:0:G:114:T:0:N:0:O:24	A:0:C:0:G:68:T:0:N:0:O:0	4,41,0,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29687	A	G	A	16	ignore low frequency variant	Pass	False	False	True	60	39	20	20	0.016666666666666666	0.0	A:49:C:0:G:1:T:0:N:0:O:10	A:39:C:0:G:0:T:0:N:0:O:0	1,19,0,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29710	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	39	20	20	0.03389830508474576	0.0	A:0:C:0:G:2:T:55:N:0:O:2	A:0:C:0:G:0:T:39:N:0:O:0	1,29,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29712	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	40	20	20	0.024390243902439025	0.0	A:40:C:0:G:1:T:0:N:0:O:0	A:40:C:0:G:0:T:0:N:0:O:0	1,19,0,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	43	20	20	0.041666666666666664	0.0	A:0:C:45:G:0:T:2:N:0:O:1	A:0:C:43:G:0:T:0:N:0:O:0	0,31,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00061	artic-pipeline	NB06	MN908947.3	29753	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	45	20	20	0.02040816326530612	0.0	A:0:C:1:G:0:T:48:N:0:O:0	A:0:C:0:G:0:T:45:N:0:O:0	0,19,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29790	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	47	20	20	0.02	0.0	A:48:C:0:G:0:T:1:N:0:O:1	A:47:C:0:G:0:T:0:N:0:O:0	0,26,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	39	47	20	20	0.02564102564102564	0.0	A:0:C:36:G:1:T:0:N:0:O:2	A:0:C:47:G:0:T:0:N:0:O:0	1,12,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29810	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	47	20	20	0.027777777777777776	0.0	A:1:C:0:G:35:T:0:N:0:O:0	A:0:C:0:G:47:T:0:N:0:O:0	0,27,1,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29811	T	A	T	16	ignore low frequency variant	Pass	False	False	True	52	47	20	20	0.019230769230769232	0.0	A:1:C:0:G:0:T:46:N:0:O:5	A:0:C:0:G:0:T:47:N:0:O:0	0,30,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	29825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	48	20	20	0.020833333333333332	0.0	A:1:C:0:G:47:T:0:N:0:O:0	A:0:C:0:G:48:T:0:N:0:O:0	1,24,0,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00061	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	66	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	166	20	20	0.027777777777777776	0.0	A:0:C:34:G:0:T:1:N:0:O:1	A:4:C:162:G:0:T:0:N:0:O:0	0,14,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	68	A	C	A	16	ignore low frequency variant	Pass	False	False	True	46	167	20	20	0.021739130434782608	0.0	A:44:C:1:G:0:T:0:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	0,14,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	39	170	20	20	0.05128205128205128	0.0	A:2:C:0:G:0:T:34:N:0:O:3	A:0:C:0:G:0:T:170:N:0:O:0	0,16,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	170	20	20	0.024390243902439025	0.0	A:40:C:0:G:0:T:1:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	0,15,1,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	87	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	170	20	20	0.027777777777777776	0.0	A:0:C:1:G:0:T:35:N:0:O:0	A:0:C:0:G:0:T:170:N:0:O:0	0,11,1,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	106	C	T	T	13	new position validated by illumina	Pass	False	True	True	36	171	20	20	1.0	0.9941520467836257	A:0:C:0:G:0:T:36:N:0:O:0	A:0:C:1:G:0:T:170:N:0:O:0	12,12,24,24	415.463	931.8	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	172	20	20	0.038461538461538464	0.0	A:25:C:0:G:1:T:0:N:0:O:0	A:172:C:0:G:0:T:0:N:0:O:0	1,4,0,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	134	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	171	20	20	0.03125	0.0	A:0:C:1:G:0:T:31:N:0:O:0	A:0:C:0:G:0:T:171:N:0:O:0	0,9,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	136	A	T	A	16	ignore low frequency variant	Pass	False	False	True	31	171	20	20	0.03225806451612903	0.0	A:30:C:0:G:0:T:1:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	0,8,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	173	20	20	0.037037037037037035	0.0	A:0:C:1:G:0:T:26:N:0:O:0	A:0:C:0:G:0:T:173:N:0:O:0	0,11,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	174	20	20	0.02857142857142857	0.0	A:0:C:1:G:0:T:34:N:0:O:0	A:0:C:0:G:0:T:174:N:0:O:0	0,12,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	154	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	175	20	20	0.027777777777777776	0.0	A:0:C:1:G:0:T:35:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,12,1,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	162	C	G	C	16	ignore low frequency variant	Pass	False	False	True	31	176	20	20	0.03225806451612903	0.0	A:0:C:29:G:1:T:0:N:0:O:1	A:0:C:176:G:0:T:0:N:0:O:0	0,8,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	180	C	T	C	1	near depth threshold	Alarm	False	False	True	20	177	20	20	0.05	0.0	A:0:C:19:G:0:T:1:N:0:O:0	A:1:C:176:G:0:T:0:N:0:O:0	0,10,1,10	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	227	G	A	G	1	near depth threshold	Alarm	False	False	True	22	170	20	20	0.045454545454545456	0.0	A:1:C:0:G:21:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	1,1,0,21	.	.	no	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	30	170	20	20	0.9666666666666667	1.0	A:0:C:0:G:0:T:29:N:0:O:1	A:0:C:0:G:0:T:170:N:0:O:0	8,9,21,21	349.237	1394.9	yes	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	284	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	170	20	20	0.03333333333333333	0.0	A:1:C:0:G:29:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	1,5,0,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	150	20	20	0.03571428571428571	0.0	A:80:C:0:G:3:T:0:N:0:O:1	A:150:C:0:G:0:T:0:N:0:O:0	3,27,0,57	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	150	20	20	0.028169014084507043	0.0	A:0:C:2:G:0:T:61:N:0:O:8	A:0:C:0:G:0:T:150:N:0:O:0	2,23,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	150	20	20	0.020618556701030927	0.0	A:2:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:148:T:2:N:0:O:0	2,40,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	624	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	150	20	20	0.020833333333333332	0.0	A:93:C:0:G:2:T:0:N:0:O:1	A:150:C:0:G:0:T:0:N:0:O:0	1,40,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1013	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	167	20	20	0.023076923076923078	0.0	A:3:C:0:G:123:T:0:N:0:O:4	A:0:C:0:G:163:T:3:N:0:O:1	3,61,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1018	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	167	20	20	0.025	0.0	A:3:C:0:G:117:T:0:N:0:O:0	A:0:C:0:G:167:T:0:N:0:O:0	3,53,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	167	20	20	0.041237113402061855	0.0	A:4:C:0:G:69:T:0:N:0:O:24	A:0:C:0:G:165:T:2:N:0:O:0	2,9,2,88	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	167	20	20	0.022727272727272728	0.0	A:85:C:0:G:2:T:0:N:0:O:1	A:167:C:0:G:0:T:0:N:0:O:0	0,44,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	167	20	20	0.02127659574468085	0.0	A:0:C:1:G:0:T:45:N:0:O:1	A:0:C:0:G:0:T:167:N:0:O:0	0,34,1,13	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	167	20	20	0.02631578947368421	0.0	A:2:C:0:G:73:T:0:N:0:O:1	A:0:C:0:G:167:T:0:N:0:O:0	2,14,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1344	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	185	20	20	0.019230769230769232	0.0	A:2:C:0:G:0:T:98:N:0:O:4	A:0:C:0:G:0:T:185:N:0:O:0	1,51,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	338	20	20	0.04516129032258064	0.0	A:0:C:147:G:0:T:7:N:0:O:1	A:0:C:338:G:0:T:0:N:0:O:0	0,94,7,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1458	G	A	G	16	ignore low frequency variant	Pass	False	False	True	160	338	20	20	0.03125	0.0	A:5:C:0:G:154:T:0:N:0:O:1	A:0:C:0:G:338:T:0:N:0:O:0	5,80,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	173	20	20	0.024193548387096774	0.005780346820809248	A:3:C:92:G:0:T:0:N:0:O:29	A:1:C:172:G:0:T:0:N:0:O:0	0,69,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	173	20	20	0.020833333333333332	0.0	A:2:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:173:T:0:N:0:O:0	2,54,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	173	20	20	0.02608695652173913	0.0	A:0:C:3:G:0:T:107:N:0:O:5	A:0:C:0:G:0:T:173:N:0:O:0	0,59,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	1818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	173	20	20	0.02702702702702703	0.0	A:36:C:0:G:1:T:0:N:0:O:0	A:173:C:0:G:0:T:0:N:0:O:0	1,5,0,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2064	A	G	A	16	ignore low frequency variant	Pass	False	False	True	178	160	20	20	0.02247191011235955	0.0	A:174:C:0:G:4:T:0:N:0:O:0	A:160:C:0:G:0:T:0:N:0:O:0	4,88,0,90	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	160	20	20	0.09090909090909091	0.0	A:13:C:0:G:130:T:0:N:0:O:0	A:0:C:0:G:160:T:0:N:0:O:0	13,54,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	2225	A	G	A	16	ignore low frequency variant	Pass	False	False	True	289	310	20	20	0.02422145328719723	0.0	A:280:C:0:G:7:T:0:N:0:O:2	A:310:C:0:G:0:T:0:N:0:O:0	7,119,0,170	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	176	20	20	0.05194805194805195	0.0	A:4:C:0:G:72:T:0:N:0:O:1	A:0:C:0:G:176:T:0:N:0:O:0	1,32,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	176	20	20	0.023809523809523808	0.005681818181818182	A:123:C:0:G:3:T:0:N:0:O:0	A:175:C:0:G:1:T:0:N:0:O:0	3,61,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	176	176	20	20	0.028409090909090908	0.0	A:170:C:5:G:0:T:0:N:0:O:1	A:175:C:0:G:1:T:0:N:0:O:0	5,95,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	176	20	20	0.023255813953488372	0.0	A:0:C:126:G:0:T:3:N:0:O:0	A:0:C:176:G:0:T:0:N:0:O:0	0,105,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2911	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	171	20	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:91:N:0:O:1	A:0:C:0:G:0:T:171:N:0:O:0	2,42,1,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	2966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	172	20	20	0.030927835051546393	0.0	A:92:C:0:G:3:T:0:N:0:O:2	A:172:C:0:G:0:T:0:N:0:O:0	3,37,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	121	172	20	20	0.6776859504132231	0.9941860465116279	A:0:C:0:G:0:T:82:N:0:O:39	A:0:C:0:G:0:T:171:N:0:O:1	44,83,38,38	53.796	1454.9	yes	.	.	.	mixed position	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	172	20	20	0.02197802197802198	0.0	A:0:C:0:G:89:T:2:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	0,31,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	149	179	20	20	0.020134228187919462	0.0	A:0:C:3:G:0:T:146:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,79,3,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	178	20	20	0.02459016393442623	0.0	A:119:C:0:G:3:T:0:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	0,74,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	179	20	20	0.03	0.0	A:0:C:96:G:0:T:3:N:0:O:1	A:1:C:178:G:0:T:0:N:0:O:0	0,54,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	61	176	20	20	0.03278688524590164	0.0	A:55:C:0:G:1:T:2:N:0:O:3	A:175:C:0:G:1:T:0:N:0:O:0	2,24,0,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	178	20	20	0.06818181818181818	0.0	A:41:C:0:G:3:T:0:N:0:O:0	A:178:C:0:G:0:T:0:N:0:O:0	1,1,2,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3420	T	A	T	16	ignore low frequency variant	Pass	False	False	True	173	179	20	20	0.023121387283236993	0.0	A:4:C:0:G:0:T:150:N:0:O:19	A:0:C:0:G:0:T:179:N:0:O:0	0,81,4,92	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	167	20	20	0.024096385542168676	0.0	A:0:C:80:G:0:T:2:N:0:O:1	A:0:C:167:G:0:T:0:N:0:O:0	0,61,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	134	20	20	0.020833333333333332	0.007462686567164179	A:0:C:0:G:81:T:2:N:0:O:13	A:0:C:0:G:133:T:1:N:0:O:0	1,55,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	134	20	20	0.03614457831325301	0.0	A:3:C:0:G:78:T:0:N:0:O:2	A:0:C:0:G:133:T:1:N:0:O:0	1,47,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	135	20	20	0.03305785123966942	0.0	A:116:C:0:G:4:T:0:N:0:O:1	A:135:C:0:G:0:T:0:N:0:O:0	4,55,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	208	237	20	20	0.019230769230769232	0.0	A:4:C:0:G:192:T:0:N:0:O:12	A:0:C:0:G:237:T:0:N:0:O:0	3,62,1,146	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4255	G	A	A	17	accept high frequency variant	Pass	False	True	True	106	105	20	20	0.9905660377358491	1.0	A:105:C:0:G:1:T:0:N:0:O:0	A:105:C:0:G:0:T:0:N:0:O:0	38,39,67,67	350.0	1268.9	yes	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	259	252	20	20	0.03088803088803089	0.011904761904761904	A:1:C:0:G:239:T:8:N:0:O:11	A:0:C:0:G:249:T:3:N:0:O:0	0,207,8,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	237	252	20	20	0.02109704641350211	0.0	A:0:C:0:G:202:T:5:N:0:O:30	A:0:C:0:G:252:T:0:N:0:O:0	0,211,5,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	187	147	20	20	0.0213903743315508	0.0	A:0:C:4:G:0:T:181:N:0:O:2	A:0:C:0:G:0:T:147:N:0:O:0	0,131,4,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	172	147	20	20	0.023255813953488372	0.0	A:157:C:0:G:0:T:4:N:0:O:11	A:147:C:0:G:0:T:0:N:0:O:0	0,104,4,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	163	20	20	0.0234375	0.0	A:0:C:3:G:0:T:124:N:0:O:1	A:0:C:0:G:0:T:163:N:0:O:0	0,66,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	163	20	20	0.044642857142857144	0.0	A:0:C:0:G:5:T:106:N:0:O:1	A:0:C:0:G:0:T:163:N:0:O:0	0,65,5,47	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5004	A	C	A	16	ignore low frequency variant	Pass	False	False	True	133	37	20	20	0.022556390977443608	0.0	A:128:C:3:G:0:T:0:N:0:O:2	A:37:C:0:G:0:T:0:N:0:O:0	3,48,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5128	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	63	20	20	0.025806451612903226	0.0	A:142:C:0:G:0:T:4:N:0:O:9	A:63:C:0:G:0:T:0:N:0:O:0	4,74,0,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5129	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	63	20	20	0.022388059701492536	0.0	A:3:C:130:G:0:T:0:N:0:O:1	A:0:C:63:G:0:T:0:N:0:O:0	3,68,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	44	20	20	0.027777777777777776	0.0	A:105:C:0:G:3:T:0:N:0:O:0	A:44:C:0:G:0:T:0:N:0:O:0	3,45,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	108	20	20	0.037037037037037035	0.0	A:3:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:108:T:0:N:0:O:0	3,33,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5564	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	56	20	20	0.022727272727272728	0.0	A:2:C:0:G:84:T:0:N:0:O:2	A:0:C:0:G:56:T:0:N:0:O:0	2,42,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	201	20	20	0.16455696202531644	0.0	A:0:C:64:G:0:T:13:N:0:O:2	A:0:C:201:G:0:T:0:N:0:O:0	0,59,13,20	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	201	20	20	0.02631578947368421	0.0	A:0:C:2:G:0:T:74:N:0:O:0	A:1:C:0:G:0:T:200:N:0:O:0	0,57,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	201	20	20	0.023529411764705882	0.0	A:0:C:2:G:0:T:81:N:0:O:2	A:0:C:0:G:0:T:201:N:0:O:0	2,37,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	5997	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	174	20	20	0.02197802197802198	0.0	A:0:C:88:G:0:T:2:N:0:O:1	A:0:C:174:G:0:T:0:N:0:O:0	0,48,2,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	174	20	20	0.12222222222222222	0.0	A:0:C:78:G:0:T:11:N:0:O:1	A:0:C:174:G:0:T:0:N:0:O:0	0,58,11,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6115	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	174	20	20	0.024691358024691357	0.0	A:0:C:2:G:0:T:79:N:0:O:0	A:0:C:0:G:0:T:174:N:0:O:0	0,47,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	174	20	20	0.021052631578947368	0.0	A:0:C:93:G:0:T:2:N:0:O:0	A:0:C:174:G:0:T:0:N:0:O:0	0,49,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	175	20	20	0.0425531914893617	0.0	A:0:C:90:G:0:T:4:N:0:O:0	A:3:C:172:G:0:T:0:N:0:O:0	3,45,1,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	147	20	20	0.07317073170731707	0.006802721088435374	A:0:C:111:G:0:T:9:N:0:O:3	A:0:C:146:G:0:T:1:N:0:O:0	0,85,9,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6257	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	147	20	20	0.022222222222222223	0.0	A:84:C:0:G:1:T:2:N:0:O:3	A:147:C:0:G:0:T:0:N:0:O:0	0,53,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	150	20	20	0.03125	0.0	A:3:C:0:G:88:T:2:N:0:O:3	A:0:C:0:G:150:T:0:N:0:O:0	3,25,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6309	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	150	20	20	0.02	0.0	A:2:C:0:G:92:T:0:N:0:O:6	A:0:C:0:G:149:T:1:N:0:O:0	2,29,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	150	20	20	0.0297029702970297	0.0	A:0:C:3:G:0:T:98:N:0:O:0	A:0:C:0:G:0:T:150:N:0:O:0	0,68,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	150	20	20	0.022727272727272728	0.0	A:3:C:0:G:129:T:0:N:0:O:0	A:0:C:0:G:149:T:1:N:0:O:0	1,61,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6626	A	C	A	16	ignore low frequency variant	Pass	False	False	True	122	94	20	20	0.02459016393442623	0.0	A:112:C:3:G:0:T:0:N:0:O:7	A:94:C:0:G:0:T:0:N:0:O:0	0,55,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	94	20	20	0.031578947368421054	0.0	A:0:C:3:G:0:T:88:N:0:O:4	A:0:C:0:G:0:T:94:N:0:O:0	0,55,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	77	20	20	0.039603960396039604	0.0	A:4:C:0:G:93:T:0:N:0:O:4	A:0:C:0:G:77:T:0:N:0:O:0	4,35,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	210	77	20	20	0.047619047619047616	0.0	A:191:C:0:G:10:T:0:N:0:O:9	A:77:C:0:G:0:T:0:N:0:O:0	10,83,0,127	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	215	76	20	20	0.023255813953488372	0.0	A:0:C:198:G:0:T:5:N:0:O:12	A:0:C:76:G:0:T:0:N:0:O:0	0,129,5,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	64	20	20	0.031914893617021274	0.0	A:3:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:64:T:0:N:0:O:0	3,31,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7031	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	44	20	20	0.020202020202020204	0.0	A:96:C:2:G:0:T:0:N:0:O:1	A:43:C:0:G:1:T:0:N:0:O:0	1,60,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	44	20	20	0.07777777777777778	0.0	A:81:C:0:G:0:T:7:N:0:O:2	A:44:C:0:G:0:T:0:N:0:O:0	0,62,7,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	173	20	20	0.02040816326530612	0.0	A:2:C:0:G:0:T:94:N:0:O:2	A:0:C:0:G:0:T:173:N:0:O:0	0,56,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7159	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	173	20	20	0.021505376344086023	0.0	A:90:C:0:G:2:T:0:N:0:O:1	A:173:C:0:G:0:T:0:N:0:O:0	0,49,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7215	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	173	20	20	0.020618556701030927	0.0	A:94:C:0:G:0:T:2:N:0:O:1	A:173:C:0:G:0:T:0:N:0:O:0	1,52,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	173	20	20	0.029850746268656716	0.0	A:2:C:0:G:65:T:0:N:0:O:0	A:0:C:0:G:173:T:0:N:0:O:0	2,32,0,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	73	172	20	20	0.0273972602739726	0.0	A:0:C:0:G:2:T:71:N:0:O:0	A:0:C:1:G:0:T:171:N:0:O:0	2,26,0,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	160	20	20	0.019801980198019802	0.0	A:2:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:159:T:1:N:0:O:0	2,22,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	7487	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	160	20	20	0.02586206896551724	0.0	A:112:C:0:G:3:T:0:N:0:O:1	A:160:C:0:G:0:T:0:N:0:O:0	3,38,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7680	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	94	20	20	0.02	0.0	A:46:C:1:G:0:T:0:N:0:O:3	A:94:C:0:G:0:T:0:N:0:O:0	1,26,0,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	94	20	20	0.024390243902439025	0.0	A:39:C:0:G:0:T:1:N:0:O:1	A:94:C:0:G:0:T:0:N:0:O:0	1,22,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	95	20	20	0.023255813953488372	0.0	A:0:C:1:G:0:T:37:N:0:O:5	A:0:C:0:G:0:T:95:N:0:O:0	0,31,1,12	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	7712	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	96	20	20	0.023809523809523808	0.0	A:0:C:40:G:0:T:1:N:0:O:1	A:2:C:94:G:0:T:0:N:0:O:0	0,25,1,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7717	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	96	20	20	0.025	0.0	A:1:C:0:G:0:T:39:N:0:O:0	A:0:C:0:G:0:T:96:N:0:O:0	1,30,0,10	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	37	136	20	20	0.02702702702702703	0.0	A:36:C:1:G:0:T:0:N:0:O:0	A:136:C:0:G:0:T:0:N:0:O:0	1,20,0,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	136	20	20	0.05	0.0	A:38:C:0:G:2:T:0:N:0:O:0	A:136:C:0:G:0:T:0:N:0:O:0	2,21,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7839	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	136	20	20	0.02127659574468085	0.0	A:46:C:0:G:1:T:0:N:0:O:0	A:136:C:0:G:0:T:0:N:0:O:0	1,30,0,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	136	20	20	0.043478260869565216	0.0	A:0:C:2:G:0:T:42:N:0:O:2	A:0:C:0:G:0:T:136:N:0:O:0	0,34,2,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	134	20	20	0.022222222222222223	0.0	A:0:C:1:G:0:T:35:N:0:O:9	A:0:C:0:G:0:T:134:N:0:O:0	0,34,1,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	102	20	20	0.02564102564102564	0.0	A:38:C:0:G:1:T:0:N:0:O:0	A:102:C:0:G:0:T:0:N:0:O:0	1,22,0,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	187	20	20	0.02112676056338028	0.0	A:0:C:3:G:0:T:139:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	0,102,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8368	G	C	G	16	ignore low frequency variant	Pass	False	False	True	112	45	20	20	0.026785714285714284	0.0	A:1:C:3:G:108:T:0:N:0:O:0	A:0:C:0:G:45:T:0:N:0:O:0	3,56,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8452	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	49	20	20	0.02608695652173913	0.0	A:110:C:0:G:3:T:0:N:0:O:2	A:49:C:0:G:0:T:0:N:0:O:0	3,54,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	49	20	20	0.02127659574468085	0.0	A:45:C:0:G:1:T:0:N:0:O:1	A:49:C:0:G:0:T:0:N:0:O:0	0,5,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	49	20	20	0.02247191011235955	0.0	A:0:C:2:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:49:N:0:O:0	0,60,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8628	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	166	20	20	0.028846153846153848	0.0	A:199:C:0:G:6:T:3:N:0:O:0	A:166:C:0:G:0:T:0:N:0:O:0	6,77,0,131	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	140	20	20	0.022222222222222223	0.0	A:0:C:3:G:0:T:131:N:0:O:1	A:0:C:0:G:0:T:140:N:0:O:0	3,68,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8676	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	140	20	20	0.020618556701030927	0.0	A:1:C:0:G:93:T:2:N:0:O:1	A:0:C:0:G:140:T:0:N:0:O:0	1,49,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	118	20	20	0.02564102564102564	0.0	A:2:C:0:G:72:T:0:N:0:O:4	A:0:C:0:G:118:T:0:N:0:O:0	2,11,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	8910	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	99	20	20	0.02	0.0	A:0:C:0:G:2:T:97:N:0:O:1	A:0:C:0:G:0:T:99:N:0:O:0	1,48,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	162	20	20	0.061224489795918366	0.0	A:6:C:0:G:0:T:85:N:0:O:7	A:0:C:0:G:0:T:162:N:0:O:0	6,43,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	163	20	20	0.022222222222222223	0.0	A:0:C:86:G:0:T:2:N:0:O:2	A:0:C:163:G:0:T:0:N:0:O:0	0,41,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9104	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	163	20	20	0.022988505747126436	0.0	A:84:C:0:G:2:T:0:N:0:O:1	A:163:C:0:G:0:T:0:N:0:O:0	2,35,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	163	20	20	0.0297029702970297	0.0	A:3:C:0:G:97:T:0:N:0:O:1	A:0:C:0:G:163:T:0:N:0:O:0	3,32,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	185	20	20	0.02654867256637168	0.0	A:109:C:0:G:3:T:0:N:0:O:1	A:184:C:0:G:0:T:0:N:0:O:1	3,52,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	140	184	20	20	0.02142857142857143	0.005434782608695652	A:0:C:0:G:137:T:3:N:0:O:0	A:0:C:0:G:183:T:1:N:0:O:0	0,73,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	184	20	20	0.021505376344086023	0.0	A:0:C:2:G:0:T:91:N:0:O:0	A:0:C:0:G:0:T:184:N:0:O:0	2,57,0,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9561	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	186	20	20	0.020833333333333332	0.0	A:0:C:47:G:0:T:1:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,32,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9587	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	208	20	20	0.021739130434782608	0.0	A:45:C:0:G:0:T:1:N:0:O:0	A:208:C:0:G:0:T:0:N:0:O:0	1,10,0,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9712	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	221	20	20	0.019230769230769232	0.0	A:0:C:46:G:0:T:1:N:0:O:5	A:3:C:218:G:0:T:0:N:0:O:0	1,20,0,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9714	C	A	C	16	ignore low frequency variant	Pass	False	False	True	38	221	20	20	0.02631578947368421	0.0	A:1:C:34:G:0:T:0:N:0:O:3	A:0:C:221:G:0:T:0:N:0:O:0	1,27,0,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9718	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	221	20	20	0.02	0.0	A:1:C:0:G:48:T:0:N:0:O:1	A:0:C:0:G:221:T:0:N:0:O:0	0,22,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9758	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	202	20	20	0.02	0.0	A:1:C:0:G:49:T:0:N:0:O:0	A:0:C:0:G:201:T:0:N:0:O:1	1,29,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9790	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	167	20	20	0.02	0.0	A:0:C:0:G:1:T:47:N:0:O:2	A:0:C:0:G:0:T:167:N:0:O:0	0,27,1,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9798	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	168	20	20	0.02127659574468085	0.0	A:0:C:46:G:0:T:1:N:0:O:0	A:0:C:168:G:0:T:0:N:0:O:0	0,31,1,16	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	146	20	20	0.056818181818181816	0.0	A:5:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:146:T:0:N:0:O:0	5,22,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	146	20	20	0.0425531914893617	0.00684931506849315	A:0:C:87:G:0:T:4:N:0:O:3	A:0:C:145:G:0:T:1:N:0:O:0	4,28,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	98	20	20	0.028169014084507043	0.0	A:2:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:98:T:0:N:0:O:0	2,12,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	179	20	20	0.02158273381294964	0.0	A:0:C:129:G:0:T:3:N:0:O:7	A:0:C:179:G:0:T:0:N:0:O:0	0,75,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	172	20	20	0.03488372093023256	0.005813953488372093	A:0:C:82:G:1:T:3:N:0:O:0	A:3:C:168:G:0:T:1:N:0:O:0	0,57,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	172	20	20	0.07272727272727272	0.0	A:0:C:0:G:8:T:98:N:0:O:4	A:0:C:0:G:0:T:172:N:0:O:0	0,52,8,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	172	20	20	0.0392156862745098	0.005813953488372093	A:4:C:87:G:0:T:0:N:0:O:11	A:1:C:171:G:0:T:0:N:0:O:0	4,43,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	11074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	201	20	20	0.013605442176870748	0.0	A:0:C:79:G:0:T:2:N:0:O:66	A:0:C:187:G:0:T:0:N:0:O:14	1,135,1,12	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	30	173	20	20	0.06666666666666667	0.0	A:0:C:0:G:2:T:27:N:0:O:1	A:0:C:0:G:0:T:173:N:0:O:0	2,11,0,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	11486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	174	20	20	0.021739130434782608	0.0	A:90:C:0:G:2:T:0:N:0:O:0	A:174:C:0:G:0:T:0:N:0:O:0	2,42,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	174	20	20	0.020618556701030927	0.0	A:93:C:0:G:1:T:2:N:0:O:1	A:174:C:0:G:0:T:0:N:0:O:0	2,48,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	11563	C	G	C	16	ignore low frequency variant	Pass	False	False	True	90	164	20	20	0.022222222222222223	0.0	A:0:C:88:G:2:T:0:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	2,48,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	61	20	20	0.06422018348623854	0.0	A:0:C:101:G:0:T:7:N:0:O:1	A:1:C:60:G:0:T:0:N:0:O:0	0,76,7,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	68	20	20	0.025210084033613446	0.0	A:116:C:0:G:0:T:3:N:0:O:0	A:68:C:0:G:0:T:0:N:0:O:0	3,57,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	186	20	20	0.025974025974025976	0.0	A:74:C:0:G:2:T:0:N:0:O:1	A:186:C:0:G:0:T:0:N:0:O:0	1,58,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	12114	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	187	20	20	0.021505376344086023	0.0053475935828877	A:0:C:91:G:0:T:2:N:0:O:0	A:4:C:182:G:0:T:1:N:0:O:0	2,54,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12116	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	187	20	20	0.02	0.0	A:0:C:97:G:0:T:2:N:0:O:1	A:1:C:186:G:0:T:0:N:0:O:0	1,57,1,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	156	20	20	0.04672897196261682	0.0	A:5:C:0:G:97:T:0:N:0:O:5	A:0:C:0:G:154:T:2:N:0:O:0	5,27,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12428	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	156	20	20	0.02127659574468085	0.00641025641025641	A:3:C:0:G:137:T:0:N:0:O:1	A:1:C:0:G:155:T:0:N:0:O:0	3,65,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	132	20	20	0.1282051282051282	0.0	A:0:C:67:G:0:T:10:N:0:O:1	A:0:C:132:G:0:T:0:N:0:O:0	0,56,10,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12845	G	C	G	16	ignore low frequency variant	Pass	False	False	True	182	104	20	20	0.02197802197802198	0.0	A:1:C:4:G:177:T:0:N:0:O:0	A:0:C:0:G:104:T:0:N:0:O:0	0,87,4,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12847	T	A	T	16	ignore low frequency variant	Pass	False	False	True	150	104	20	20	0.02666666666666667	0.0	A:4:C:0:G:0:T:145:N:0:O:1	A:0:C:0:G:0:T:104:N:0:O:0	0,88,4,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12848	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	104	20	20	0.03125	0.0	A:155:C:0:G:5:T:0:N:0:O:0	A:104:C:0:G:0:T:0:N:0:O:0	1,84,4,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	104	20	20	0.02666666666666667	0.0	A:4:C:0:G:143:T:0:N:0:O:3	A:0:C:0:G:104:T:0:N:0:O:0	4,57,0,93	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	104	20	20	0.021739130434782608	0.0	A:129:C:0:G:3:T:0:N:0:O:6	A:104:C:0:G:0:T:0:N:0:O:0	3,49,0,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	146	104	20	20	0.02054794520547945	0.0	A:141:C:0:G:3:T:0:N:0:O:2	A:104:C:0:G:0:T:0:N:0:O:0	3,52,0,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	12995	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	104	20	20	0.023076923076923078	0.0	A:3:C:0:G:126:T:0:N:0:O:1	A:0:C:0:G:103:T:1:N:0:O:0	3,47,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	104	20	20	0.037037037037037035	0.0	A:4:C:0:G:101:T:0:N:0:O:3	A:0:C:0:G:104:T:0:N:0:O:0	4,30,0,78	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13124	G	T	G	16	ignore low frequency variant	Pass	False	False	True	49	118	20	20	0.02040816326530612	0.0	A:0:C:0:G:46:T:1:N:0:O:2	A:0:C:0:G:118:T:0:N:0:O:0	1,25,0,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	118	20	20	0.020202020202020204	0.0	A:0:C:94:G:0:T:2:N:0:O:3	A:1:C:117:G:0:T:0:N:0:O:0	0,64,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13350	G	T	G	16	ignore low frequency variant	Pass	False	False	True	326	193	20	20	0.018404907975460124	0.0	A:0:C:0:G:259:T:6:N:0:O:61	A:0:C:0:G:193:T:0:N:0:O:0	2,192,4,134	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	130	20	20	0.041666666666666664	0.0	A:1:C:86:G:0:T:4:N:0:O:5	A:0:C:130:G:0:T:0:N:0:O:0	0,84,4,12	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	130	20	20	0.04032258064516129	0.0	A:119:C:0:G:5:T:0:N:0:O:0	A:130:C:0:G:0:T:0:N:0:O:0	5,56,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	90	20	20	0.024793388429752067	0.0	A:117:C:0:G:3:T:0:N:0:O:1	A:90:C:0:G:0:T:0:N:0:O:0	3,49,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	205	20	20	0.022222222222222223	0.0	A:2:C:0:G:86:T:0:N:0:O:2	A:0:C:0:G:204:T:1:N:0:O:0	2,19,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	205	20	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:205:T:0:N:0:O:0	2,35,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	205	20	20	0.05263157894736842	0.0	A:4:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:203:T:2:N:0:O:0	4,9,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	161	20	20	0.027522935779816515	0.0	A:0:C:3:G:0:T:102:N:0:O:4	A:0:C:0:G:0:T:161:N:0:O:0	2,38,1,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	91	201	20	20	0.967032967032967	0.9850746268656716	A:0:C:2:G:0:T:88:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:3	49,51,39,40	313.9	1304.6	yes	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	201	20	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:0:C:201:G:0:T:0:N:0:O:0	0,67,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	176	20	20	0.03636363636363636	0.0	A:0:C:106:G:0:T:4:N:0:O:0	A:0:C:176:G:0:T:0:N:0:O:0	0,73,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	129	20	20	0.02197802197802198	0.0	A:87:C:0:G:2:T:0:N:0:O:2	A:129:C:0:G:0:T:0:N:0:O:0	2,37,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	15076	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	154	20	20	0.02830188679245283	0.0	A:0:C:3:G:0:T:101:N:0:O:2	A:0:C:0:G:0:T:154:N:0:O:0	0,63,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	154	20	20	0.039603960396039604	0.0	A:4:C:0:G:96:T:0:N:0:O:1	A:0:C:0:G:153:T:1:N:0:O:0	4,37,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	150	20	20	0.02702702702702703	0.0	A:0:C:2:G:0:T:69:N:0:O:3	A:0:C:0:G:0:T:150:N:0:O:0	0,68,2,6	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	15268	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	177	20	20	0.021052631578947368	0.0	A:2:C:0:G:82:T:0:N:0:O:11	A:0:C:0:G:177:T:0:N:0:O:0	2,19,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	191	20	20	0.04081632653061224	0.0	A:1:C:0:G:93:T:4:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	0,52,4,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	178	20	20	0.1111111111111111	0.0	A:0:C:55:G:0:T:7:N:0:O:1	A:2:C:176:G:0:T:0:N:0:O:0	1,38,6,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	16140	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	178	20	20	0.03007518796992481	0.0	A:128:C:0:G:4:T:0:N:0:O:1	A:178:C:0:G:0:T:0:N:0:O:0	2,68,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	16384	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	93	20	20	0.02	0.0	A:0:C:0:G:2:T:95:N:0:O:3	A:0:C:0:G:0:T:93:N:0:O:0	0,44,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	131	26	20	20	0.03816793893129771	0.0	A:0:C:0:G:125:T:5:N:0:O:1	A:0:C:0:G:26:T:0:N:0:O:0	4,59,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	207	20	20	0.03636363636363636	0.0	A:0:C:0:G:4:T:105:N:0:O:1	A:0:C:3:G:0:T:204:N:0:O:0	0,72,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	207	20	20	0.018518518518518517	0.0	A:0:C:98:G:0:T:2:N:0:O:8	A:1:C:206:G:0:T:0:N:0:O:0	0,56,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	16948	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	207	20	20	0.021739130434782608	0.0	A:1:C:89:G:0:T:2:N:0:O:0	A:0:C:207:G:0:T:0:N:0:O:0	0,62,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17004	C	T	C	7	mixed illumina variant	Check	False	False	True	123	207	20	20	0.36585365853658536	0.4251207729468599	A:0:C:74:G:0:T:45:N:0:O:4	A:1:C:118:G:0:T:88:N:0:O:0	17,63,28,60	.	.	mixed	.	.	mismatch(s)	mixed position	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	207	20	20	0.0641025641025641	0.0	A:72:C:5:G:0:T:0:N:0:O:1	A:207:C:0:G:0:T:0:N:0:O:0	5,40,0,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	181	291	20	20	0.022099447513812154	0.0	A:4:C:0:G:170:T:0:N:0:O:7	A:0:C:0:G:288:T:3:N:0:O:0	4,34,0,147	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	119	20	20	0.03669724770642202	0.0	A:104:C:0:G:4:T:0:N:0:O:1	A:119:C:0:G:0:T:0:N:0:O:0	4,40,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	124	20	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:124:T:0:N:0:O:0	2,29,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	124	20	20	0.02247191011235955	0.0	A:2:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:124:T:0:N:0:O:0	2,46,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	124	20	20	0.041237113402061855	0.0	A:0:C:93:G:0:T:4:N:0:O:0	A:0:C:124:G:0:T:0:N:0:O:0	0,50,4,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	159	20	20	0.054945054945054944	0.0	A:0:C:85:G:0:T:5:N:0:O:1	A:0:C:159:G:0:T:0:N:0:O:0	0,56,5,35	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	159	20	20	0.042735042735042736	0.0	A:101:C:0:G:0:T:5:N:0:O:11	A:159:C:0:G:0:T:0:N:0:O:0	0,51,5,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	159	20	20	0.08661417322834646	0.0	A:11:C:0:G:115:T:0:N:0:O:1	A:0:C:0:G:159:T:0:N:0:O:0	0,72,11,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	17989	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	159	20	20	0.023076923076923078	0.0	A:0:C:3:G:0:T:127:N:0:O:0	A:0:C:0:G:0:T:159:N:0:O:0	0,74,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	18119	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	164	20	20	0.02	0.0	A:0:C:2:G:0:T:97:N:0:O:1	A:0:C:0:G:0:T:164:N:0:O:0	1,62,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	173	20	20	0.03125	0.0	A:0:C:0:G:3:T:93:N:0:O:0	A:0:C:0:G:0:T:172:N:0:O:1	2,30,1,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	159	20	20	0.02702702702702703	0.0	A:2:C:0:G:71:T:1:N:0:O:0	A:0:C:0:G:158:T:1:N:0:O:0	2,21,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	35	159	20	20	0.05714285714285714	0.0	A:29:C:0:G:0:T:2:N:0:O:4	A:159:C:0:G:0:T:0:N:0:O:0	2,20,0,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	18879	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	159	20	20	0.043010752688172046	0.0	A:89:C:0:G:4:T:0:N:0:O:0	A:159:C:0:G:0:T:0:N:0:O:0	4,27,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	18988	G	A	G	16	ignore low frequency variant	Pass	False	False	True	181	187	20	20	0.022099447513812154	0.0	A:4:C:0:G:173:T:1:N:0:O:3	A:0:C:0:G:187:T:0:N:0:O:0	4,59,0,122	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	19071	T	C	T	16	ignore low frequency variant	Pass	False	False	True	190	187	20	20	0.021052631578947368	0.0	A:1:C:4:G:0:T:185:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	0,91,4,99	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	19293	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	8	20	20	0.02727272727272727	0.0	A:0:C:3:G:1:T:106:N:0:O:0	A:0:C:0:G:0:T:8:N:0:O:0	0,60,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	19305	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	8	20	20	0.021052631578947368	0.0	A:2:C:0:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:8:N:0:O:0	1,68,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	18	20	20	0.030612244897959183	0.0	A:0:C:3:G:0:T:95:N:0:O:0	A:0:C:0:G:0:T:18:N:0:O:0	0,60,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	19478	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	18	20	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:18:T:0:N:0:O:0	1,29,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	17	20	20	0.109375	0.0	A:0:C:57:G:0:T:7:N:0:O:0	A:0:C:17:G:0:T:0:N:0:O:0	0,50,7,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	17	20	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:17:N:0:O:0	0,61,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	177	20	20	0.031578947368421054	0.0	A:0:C:92:G:0:T:3:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	0,54,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20207	A	C	A	16	ignore low frequency variant	Pass	False	False	True	205	220	20	20	0.01951219512195122	0.0	A:190:C:4:G:0:T:0:N:0:O:11	A:220:C:0:G:0:T:0:N:0:O:0	4,102,0,103	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20259	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	51	20	20	0.028846153846153848	0.0	A:0:C:98:G:0:T:3:N:0:O:3	A:0:C:51:G:0:T:0:N:0:O:0	0,70,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	71	20	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:71:T:0:N:0:O:0	0,67,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20380	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	71	20	20	0.022556390977443608	0.0	A:0:C:129:G:0:T:3:N:0:O:1	A:1:C:70:G:0:T:0:N:0:O:0	1,68,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	256	20	20	0.0196078431372549	0.00390625	A:0:C:94:G:0:T:2:N:0:O:6	A:0:C:255:G:0:T:1:N:0:O:0	0,60,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	250	20	20	0.034782608695652174	0.0	A:111:C:0:G:4:T:0:N:0:O:0	A:250:C:0:G:0:T:0:N:0:O:0	4,45,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	192	20	20	0.028846153846153848	0.0	A:98:C:0:G:3:T:0:N:0:O:3	A:192:C:0:G:0:T:0:N:0:O:0	3,34,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	20913	A	T	A	16	ignore low frequency variant	Pass	False	False	True	125	192	20	20	0.024	0.0	A:122:C:0:G:0:T:3:N:0:O:0	A:192:C:0:G:0:T:0:N:0:O:0	3,56,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	192	20	20	0.02040816326530612	0.0	A:2:C:0:G:88:T:0:N:0:O:8	A:0:C:0:G:191:T:1:N:0:O:0	1,16,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	59	192	20	20	0.03389830508474576	0.0	A:0:C:0:G:2:T:57:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:1	2,10,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	21	20	20	0.0425531914893617	0.0	A:1:C:0:G:82:T:4:N:0:O:7	A:0:C:0:G:21:T:0:N:0:O:0	0,71,4,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	33	20	20	0.02702702702702703	0.0	A:0:C:69:G:0:T:2:N:0:O:3	A:0:C:33:G:0:T:0:N:0:O:0	0,49,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	21	20	20	0.023529411764705882	0.0	A:0:C:82:G:0:T:2:N:0:O:1	A:0:C:21:G:0:T:0:N:0:O:0	0,65,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	67	20	20	0.041237113402061855	0.0	A:0:C:92:G:0:T:4:N:0:O:1	A:0:C:67:G:0:T:0:N:0:O:0	0,59,4,38	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	77	20	20	0.043010752688172046	0.0	A:4:C:0:G:88:T:0:N:0:O:1	A:0:C:0:G:77:T:0:N:0:O:0	4,18,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	93	20	20	0.020202020202020204	0.0	A:0:C:0:G:2:T:97:N:0:O:0	A:0:C:0:G:0:T:93:N:0:O:0	2,41,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	170	20	20	0.0375	0.0	A:0:C:70:G:0:T:3:N:0:O:7	A:1:C:168:G:1:T:0:N:0:O:0	3,21,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	170	20	20	0.025	0.0	A:3:C:0:G:107:T:0:N:0:O:10	A:0:C:0:G:170:T:0:N:0:O:0	3,52,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	169	20	20	0.02054794520547945	0.0	A:3:C:0:G:143:T:0:N:0:O:0	A:0:C:0:G:169:T:0:N:0:O:0	3,63,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	154	168	20	20	0.045454545454545456	0.0	A:0:C:0:G:7:T:147:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	7,51,0,103	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	171	20	20	0.03389830508474576	0.0	A:4:C:0:G:109:T:0:N:0:O:5	A:0:C:0:G:171:T:0:N:0:O:0	4,17,0,101	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	130	171	20	20	0.023076923076923078	0.0	A:0:C:0:G:3:T:98:N:0:O:29	A:0:C:0:G:0:T:171:N:0:O:0	0,74,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	22972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	171	20	20	0.03409090909090909	0.0	A:0:C:3:G:0:T:85:N:0:O:0	A:0:C:0:G:0:T:171:N:0:O:0	0,53,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	22988	G	C	G	16	ignore low frequency variant	Pass	False	False	True	101	171	20	20	0.019801980198019802	0.0	A:1:C:2:G:97:T:0:N:0:O:1	A:0:C:0:G:170:T:1:N:0:O:0	2,43,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23258	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	135	20	20	0.03571428571428571	0.0	A:4:C:0:G:107:T:1:N:0:O:0	A:0:C:0:G:134:T:1:N:0:O:0	4,56,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23305	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	135	20	20	0.02459016393442623	0.0	A:116:C:0:G:3:T:0:N:0:O:3	A:135:C:0:G:0:T:0:N:0:O:0	3,49,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23307	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	135	20	20	0.0196078431372549	0.0	A:0:C:0:G:2:T:98:N:0:O:2	A:0:C:0:G:0:T:135:N:0:O:0	2,49,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	146	135	20	20	0.910958904109589	1.0	A:0:C:0:G:133:T:0:N:0:O:13	A:0:C:0:G:135:T:0:N:0:O:0	68,81,65,65	275.463	1677.0	yes	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	23424	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	135	20	20	0.024	0.0	A:0:C:118:G:0:T:3:N:0:O:4	A:0:C:135:G:0:T:0:N:0:O:0	3,66,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23426	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	135	20	20	0.03125	0.0	A:0:C:0:G:124:T:4:N:0:O:0	A:0:C:0:G:135:T:0:N:0:O:0	4,75,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	170	20	20	0.03260869565217391	0.0	A:89:C:0:G:3:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	3,23,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	170	20	20	0.053763440860215055	0.0	A:5:C:0:G:83:T:0:N:0:O:5	A:0:C:0:G:169:T:1:N:0:O:0	5,20,0,73	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	170	20	20	0.02531645569620253	0.0	A:77:C:0:G:2:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	2,16,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23595	C	T	T	13	new position validated by illumina	Pass	False	True	True	128	171	20	20	1.0	1.0	A:0:C:0:G:0:T:128:N:0:O:0	A:0:C:0:G:0:T:171:N:0:O:0	61,61,67,67	70.0	1091.9	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23663	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	171	20	20	0.019230769230769232	0.0	A:0:C:0:G:94:T:2:N:0:O:8	A:0:C:0:G:171:T:0:N:0:O:0	2,53,0,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	149	20	20	0.10569105691056911	0.0	A:0:C:110:G:0:T:13:N:0:O:0	A:0:C:149:G:0:T:0:N:0:O:0	0,91,13,32	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	149	20	20	0.03759398496240601	0.013422818791946308	A:0:C:5:G:0:T:128:N:0:O:0	A:0:C:2:G:0:T:147:N:0:O:0	0,94,5,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	89	149	20	20	0.02247191011235955	0.0	A:2:C:0:G:0:T:87:N:0:O:0	A:0:C:0:G:0:T:149:N:0:O:0	2,28,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	23972	C	A	C	16	ignore low frequency variant	Pass	False	False	True	134	149	20	20	0.022388059701492536	0.0	A:3:C:123:G:1:T:1:N:0:O:6	A:0:C:149:G:0:T:0:N:0:O:0	3,60,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	235	282	20	20	0.02127659574468085	0.0	A:5:C:0:G:228:T:0:N:0:O:2	A:0:C:0:G:282:T:0:N:0:O:0	5,84,0,151	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	134	20	20	0.034482758620689655	0.0	A:3:C:0:G:80:T:1:N:0:O:3	A:0:C:0:G:134:T:0:N:0:O:0	3,20,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	176	20	20	0.026785714285714284	0.0	A:3:C:0:G:91:T:0:N:0:O:18	A:0:C:0:G:176:T:0:N:0:O:0	2,37,1,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	176	20	20	0.02857142857142857	0.0	A:102:C:0:G:3:T:0:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	2,42,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	176	20	20	0.025210084033613446	0.0	A:0:C:0:G:116:T:3:N:0:O:0	A:0:C:0:G:176:T:0:N:0:O:0	3,49,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	176	20	20	0.031578947368421054	0.0	A:3:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:176:T:0:N:0:O:0	0,57,3,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	176	20	20	0.021739130434782608	0.0	A:0:C:0:G:2:T:87:N:0:O:3	A:0:C:0:G:0:T:176:N:0:O:0	0,58,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	39	175	20	20	0.05128205128205128	0.0	A:0:C:2:G:0:T:36:N:0:O:1	A:0:C:0:G:0:T:175:N:0:O:0	2,23,0,16	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	165	20	20	0.024793388429752067	0.0	A:3:C:0:G:118:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	3,38,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	165	20	20	0.02586206896551724	0.0	A:0:C:0:G:3:T:113:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	1,49,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25285	T	A	T	16	ignore low frequency variant	Pass	False	False	True	139	165	20	20	0.02877697841726619	0.0	A:4:C:0:G:0:T:135:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	0,65,4,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	154	20	20	0.02912621359223301	0.0	A:0:C:0:G:3:T:100:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	3,35,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25444	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	154	20	20	0.021739130434782608	0.0	A:2:C:0:G:87:T:0:N:0:O:3	A:0:C:0:G:154:T:0:N:0:O:0	2,32,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	154	20	20	0.04	0.0	A:95:C:0:G:0:T:4:N:0:O:1	A:154:C:0:G:0:T:0:N:0:O:0	3,44,1,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	154	20	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	0,53,2,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	154	20	20	0.030303030303030304	0.0	A:1:C:0:G:3:T:91:N:0:O:4	A:0:C:0:G:0:T:154:N:0:O:0	3,42,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	154	20	20	0.038461538461538464	0.0	A:4:C:92:G:0:T:0:N:0:O:8	A:0:C:154:G:0:T:0:N:0:O:0	4,55,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	177	20	20	0.024691358024691357	0.0	A:2:C:0:G:77:T:0:N:0:O:2	A:0:C:0:G:177:T:0:N:0:O:0	1,12,1,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	128	177	20	20	0.0390625	0.005649717514124294	A:5:C:79:G:0:T:0:N:0:O:44	A:1:C:176:G:0:T:0:N:0:O:0	4,33,1,95	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	64	177	20	20	0.140625	0.0	A:54:C:9:G:0:T:0:N:0:O:1	A:177:C:0:G:0:T:0:N:0:O:0	2,38,7,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25823	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	177	20	20	0.022900763358778626	0.0	A:125:C:0:G:3:T:0:N:0:O:3	A:177:C:0:G:0:T:0:N:0:O:0	3,65,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	177	20	20	0.05128205128205128	0.0	A:0:C:111:G:0:T:6:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	1,72,5,45	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	177	20	20	0.03333333333333333	0.0	A:86:C:1:G:0:T:3:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	0,61,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	177	20	20	0.035398230088495575	0.0	A:107:C:0:G:4:T:0:N:0:O:2	A:177:C:0:G:0:T:0:N:0:O:0	4,50,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	177	20	20	0.038461538461538464	0.0	A:98:C:0:G:4:T:0:N:0:O:2	A:177:C:0:G:0:T:0:N:0:O:0	4,36,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	177	20	20	0.023809523809523808	0.0	A:80:C:0:G:2:T:0:N:0:O:2	A:177:C:0:G:0:T:0:N:0:O:0	2,25,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	177	20	20	0.037383177570093455	0.0	A:103:C:0:G:4:T:0:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	3,46,1,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25918	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	177	20	20	0.024193548387096774	0.0	A:119:C:0:G:3:T:0:N:0:O:2	A:177:C:0:G:0:T:0:N:0:O:0	3,56,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	177	20	20	0.02197802197802198	0.0	A:2:C:0:G:88:T:0:N:0:O:1	A:0:C:0:G:177:T:0:N:0:O:0	1,26,1,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26134	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	277	20	20	0.023529411764705882	0.0	A:82:C:0:G:2:T:0:N:0:O:1	A:277:C:0:G:0:T:0:N:0:O:0	2,56,0,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	160	20	20	0.02097902097902098	0.0	A:0:C:104:G:0:T:3:N:0:O:36	A:0:C:160:G:0:T:0:N:0:O:0	0,114,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	160	20	20	0.026785714285714284	0.0	A:3:C:0:G:108:T:0:N:0:O:1	A:0:C:0:G:160:T:0:N:0:O:0	3,32,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	282	20	20	0.03278688524590164	0.0	A:0:C:177:G:0:T:6:N:0:O:0	A:1:C:281:G:0:T:0:N:0:O:0	0,152,6,31	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	221	283	20	20	0.03619909502262444	0.0	A:0:C:8:G:0:T:213:N:0:O:0	A:0:C:0:G:0:T:283:N:0:O:0	0,155,8,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26562	A	T	A	16	ignore low frequency variant	Pass	False	False	True	144	277	20	20	0.020833333333333332	0.0	A:138:C:0:G:0:T:3:N:0:O:3	A:277:C:0:G:0:T:0:N:0:O:0	0,88,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	141	20	20	0.03125	0.0	A:0:C:3:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:141:N:0:O:0	0,66,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	141	20	20	0.030927835051546393	0.0	A:93:C:0:G:0:T:3:N:0:O:1	A:141:C:0:G:0:T:0:N:0:O:0	3,25,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	141	20	20	0.08333333333333333	0.0	A:7:C:0:G:76:T:0:N:0:O:1	A:0:C:0:G:141:T:0:N:0:O:0	7,14,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	141	20	20	0.024096385542168676	0.0	A:0:C:80:G:1:T:2:N:0:O:0	A:0:C:141:G:0:T:0:N:0:O:0	0,60,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	136	20	20	0.042105263157894736	0.0	A:4:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:136:T:0:N:0:O:0	4,37,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26788	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	136	20	20	0.027522935779816515	0.0	A:3:C:0:G:106:T:0:N:0:O:0	A:0:C:0:G:136:T:0:N:0:O:0	3,47,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	166	20	20	0.02040816326530612	0.0	A:3:C:2:G:142:T:0:N:0:O:0	A:0:C:0:G:164:T:2:N:0:O:0	3,44,0,103	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	166	20	20	0.022556390977443608	0.0	A:130:C:0:G:3:T:0:N:0:O:0	A:166:C:0:G:0:T:0:N:0:O:0	3,32,0,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	166	20	20	0.08737864077669903	0.0	A:1:C:92:G:0:T:9:N:0:O:1	A:0:C:166:G:0:T:0:N:0:O:0	0,79,9,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	162	20	20	0.031578947368421054	0.0	A:3:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:161:T:1:N:0:O:0	3,25,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	162	20	20	0.03	0.0	A:96:C:0:G:3:T:0:N:0:O:1	A:162:C:0:G:0:T:0:N:0:O:0	3,25,0,75	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28232	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	150	20	20	0.02127659574468085	0.0	A:0:C:138:G:0:T:3:N:0:O:0	A:0:C:150:G:0:T:0:N:0:O:0	0,86,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28349	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	150	20	20	0.02127659574468085	0.0	A:138:C:0:G:3:T:0:N:0:O:0	A:150:C:0:G:0:T:0:N:0:O:0	3,54,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	150	20	20	0.02631578947368421	0.0	A:0:C:67:G:0:T:2:N:0:O:7	A:3:C:147:G:0:T:0:N:0:O:0	1,37,1,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28476	G	C	G	16	ignore low frequency variant	Pass	False	False	True	114	140	20	20	0.02631578947368421	0.0	A:0:C:3:G:111:T:0:N:0:O:0	A:0:C:0:G:140:T:0:N:0:O:0	3,65,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28491	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	140	20	20	0.0196078431372549	0.007142857142857143	A:2:C:92:G:0:T:0:N:0:O:8	A:1:C:139:G:0:T:0:N:0:O:0	2,52,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28614	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	140	20	20	0.022727272727272728	0.0	A:2:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:139:T:1:N:0:O:0	0,63,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	121	140	20	20	0.01652892561983471	0.007142857142857143	A:2:C:88:G:0:T:0:N:0:O:31	A:1:C:139:G:0:T:0:N:0:O:0	2,73,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28796	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	153	20	20	0.024193548387096774	0.0	A:3:C:0:G:121:T:0:N:0:O:0	A:0:C:0:G:153:T:0:N:0:O:0	1,44,2,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	28881	G	A	A	17	accept high frequency variant	Pass	False	True	True	157	151	20	20	1.0	0.9933774834437086	A:157:C:0:G:0:T:0:N:0:O:0	A:150:C:0:G:0:T:0:N:0:O:1	71,71,86,86	197.682	3127.2	yes	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	28882	G	A	A	17	accept high frequency variant	Pass	False	True	True	145	151	20	20	1.0	0.9933774834437086	A:145:C:0:G:0:T:0:N:0:O:0	A:150:C:0:G:0:T:0:N:0:O:1	61,61,84,84	197.682	3127.2	yes	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	28883	G	C	C	17	accept high frequency variant	Pass	False	True	True	154	151	20	20	1.0	0.9933774834437086	A:0:C:154:G:0:T:0:N:0:O:0	A:0:C:150:G:0:T:0:N:0:O:1	70,70,84,84	197.682	3127.2	yes	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	152	20	20	0.02459016393442623	0.0	A:3:C:0:G:118:T:0:N:0:O:1	A:0:C:0:G:149:T:2:N:0:O:1	3,30,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	186	304	20	20	0.03763440860215054	0.0	A:0:C:175:G:0:T:7:N:0:O:4	A:2:C:302:G:0:T:0:N:0:O:0	0,159,7,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	29056	A	C	A	16	ignore low frequency variant	Pass	False	False	True	36	165	20	20	0.027777777777777776	0.0	A:35:C:1:G:0:T:0:N:0:O:0	A:165:C:0:G:0:T:0:N:0:O:0	1,2,0,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	29362	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	73	20	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:0:C:73:G:0:T:0:N:0:O:0	2,48,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	29378	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	73	20	20	0.025974025974025976	0.0	A:74:C:2:G:0:T:1:N:0:O:0	A:73:C:0:G:0:T:0:N:0:O:0	0,46,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	73	20	20	0.02564102564102564	0.0	A:36:C:0:G:1:T:0:N:0:O:2	A:73:C:0:G:0:T:0:N:0:O:0	1,6,0,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	29652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	160	23	20	20	0.025	0.0	A:4:C:0:G:0:T:156:N:0:O:0	A:0:C:0:G:0:T:23:N:0:O:0	0,85,4,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00062	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00062	artic-pipeline	NB07	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	17	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	66	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	154	20	20	0.021739130434782608	0.0	A:0:C:89:G:0:T:2:N:0:O:1	A:1:C:153:G:0:T:0:N:0:O:0	0,13,2,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	160	20	20	0.022222222222222223	0.0	A:0:C:86:G:0:T:2:N:0:O:2	A:0:C:160:G:0:T:0:N:0:O:0	0,10,2,80	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	160	20	20	0.03225806451612903	0.0	A:0:C:2:G:0:T:59:N:0:O:1	A:0:C:0:G:0:T:160:N:0:O:0	0,9,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	164	20	20	0.024096385542168676	0.0	A:0:C:2:G:0:T:81:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	0,13,2,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	166	20	20	0.022727272727272728	0.0	A:0:C:1:G:0:T:43:N:0:O:0	A:1:C:0:G:0:T:165:N:0:O:0	0,11,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	165	20	20	0.02857142857142857	0.0	A:0:C:2:G:0:T:68:N:0:O:0	A:0:C:0:G:0:T:165:N:0:O:0	0,9,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	165	20	20	0.05084745762711865	0.0	A:0:C:3:G:0:T:55:N:0:O:1	A:0:C:0:G:0:T:165:N:0:O:0	0,11,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	237	20	20	0.02857142857142857	0.0	A:0:C:2:G:0:T:64:N:0:O:4	A:0:C:0:G:0:T:237:N:0:O:0	1,23,1,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	487	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	255	20	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:255:T:0:N:0:O:0	2,40,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	250	20	20	0.02654867256637168	0.0	A:110:C:0:G:3:T:0:N:0:O:0	A:250:C:0:G:0:T:0:N:0:O:0	3,43,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	610	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	217	20	20	0.020202020202020204	0.0	A:97:C:0:G:2:T:0:N:0:O:0	A:217:C:0:G:0:T:0:N:0:O:0	2,42,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	672	A	G	A	16	ignore low frequency variant	Pass	False	False	True	231	255	20	20	0.021645021645021644	0.0	A:222:C:0:G:5:T:1:N:0:O:3	A:255:C:0:G:0:T:0:N:0:O:0	4,89,1,142	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	179	20	20	0.030927835051546393	0.0	A:92:C:0:G:0:T:3:N:0:O:2	A:179:C:0:G:0:T:0:N:0:O:0	3,16,0,81	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	175	20	20	0.028169014084507043	0.0	A:2:C:0:G:68:T:0:N:0:O:1	A:0:C:0:G:175:T:0:N:0:O:0	2,7,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1070	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	175	20	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:175:T:0:N:0:O:0	0,40,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1091	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	175	20	20	0.02702702702702703	0.0	A:0:C:70:G:0:T:2:N:0:O:2	A:1:C:174:G:0:T:0:N:0:O:0	1,44,1,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	174	20	20	0.03225806451612903	0.0	A:3:C:0:G:70:T:0:N:0:O:20	A:0:C:0:G:173:T:1:N:0:O:0	3,8,0,85	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	224	353	20	20	0.022321428571428572	0.0	A:5:C:0:G:217:T:0:N:0:O:2	A:0:C:0:G:353:T:0:N:0:O:0	4,109,1,115	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	356	20	20	0.019417475728155338	0.0028089887640449437	A:0:C:97:G:0:T:2:N:0:O:4	A:4:C:351:G:0:T:1:N:0:O:0	0,65,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	356	20	20	0.02040816326530612	0.0	A:0:C:2:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:356:N:0:O:0	0,69,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	127	195	20	20	0.031496062992125984	0.010256410256410256	A:4:C:95:G:0:T:0:N:0:O:28	A:2:C:192:G:0:T:0:N:0:O:1	2,70,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1744	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	194	20	20	0.024	0.0	A:0:C:0:G:3:T:121:N:0:O:1	A:0:C:0:G:0:T:194:N:0:O:0	3,55,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	194	20	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:194:T:0:N:0:O:0	2,52,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	194	20	20	0.04918032786885246	0.005154639175257732	A:56:C:0:G:3:T:0:N:0:O:2	A:193:C:0:G:1:T:0:N:0:O:0	2,8,1,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	194	20	20	0.030612244897959183	0.0	A:3:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:193:T:1:N:0:O:0	0,36,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	194	20	20	0.021897810218978103	0.0	A:3:C:0:G:123:T:0:N:0:O:11	A:0:C:0:G:194:T:0:N:0:O:0	2,70,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	194	20	20	0.02608695652173913	0.005154639175257732	A:112:C:0:G:3:T:0:N:0:O:0	A:193:C:0:G:1:T:0:N:0:O:0	0,55,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	152	20	20	0.09782608695652174	0.0	A:9:C:0:G:82:T:0:N:0:O:1	A:0:C:0:G:151:T:1:N:0:O:0	9,29,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	126	312	20	20	0.023809523809523808	0.0	A:123:C:3:G:0:T:0:N:0:O:0	A:312:C:0:G:0:T:0:N:0:O:0	3,53,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	312	20	20	0.025	0.0	A:2:C:0:G:78:T:0:N:0:O:0	A:0:C:0:G:312:T:0:N:0:O:0	0,31,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	192	20	20	0.04819277108433735	0.0	A:4:C:0:G:78:T:0:N:0:O:1	A:0:C:0:G:191:T:1:N:0:O:0	0,26,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	153	196	20	20	0.0196078431372549	0.0	A:0:C:3:G:0:T:147:N:0:O:3	A:0:C:0:G:0:T:196:N:0:O:0	0,94,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	2625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	196	20	20	0.02	0.0	A:3:C:0:G:147:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	3,66,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	182	20	20	0.033707865168539325	0.005494505494505495	A:0:C:0:G:78:T:3:N:0:O:8	A:0:C:0:G:181:T:1:N:0:O:0	0,61,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	3159	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	182	20	20	0.025974025974025976	0.0	A:0:C:74:G:0:T:2:N:0:O:1	A:0:C:182:G:0:T:0:N:0:O:0	0,59,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	168	20	20	0.02564102564102564	0.0	A:0:C:3:G:0:T:114:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	0,68,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	168	20	20	0.02127659574468085	0.0	A:92:C:2:G:0:T:0:N:0:O:0	A:168:C:0:G:0:T:0:N:0:O:0	0,53,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	167	20	20	0.0196078431372549	0.0	A:47:C:0:G:0:T:1:N:0:O:3	A:167:C:0:G:0:T:0:N:0:O:0	1,24,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	168	20	20	0.02127659574468085	0.0	A:43:C:0:G:1:T:0:N:0:O:3	A:168:C:0:G:0:T:0:N:0:O:0	1,6,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	176	20	20	0.02608695652173913	0.0	A:0:C:112:G:0:T:3:N:0:O:0	A:0:C:176:G:0:T:0:N:0:O:0	0,87,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3747	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	176	20	20	0.022727272727272728	0.0	A:0:C:126:G:0:T:3:N:0:O:3	A:3:C:173:G:0:T:0:N:0:O:0	0,97,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	139	20	20	0.022222222222222223	0.0	A:2:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:136:T:3:N:0:O:0	0,52,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	139	20	20	0.025210084033613446	0.0	A:0:C:3:G:0:T:116:N:0:O:0	A:0:C:0:G:0:T:139:N:0:O:0	0,67,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	3939	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	140	20	20	0.02247191011235955	0.0	A:2:C:0:G:78:T:0:N:0:O:9	A:0:C:0:G:138:T:1:N:0:O:1	2,13,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	4010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	139	20	20	0.02727272727272727	0.0	A:0:C:106:G:0:T:3:N:0:O:1	A:0:C:139:G:0:T:0:N:0:O:0	0,67,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	221	255	20	20	0.027149321266968326	0.0	A:6:C:0:G:200:T:0:N:0:O:15	A:0:C:0:G:254:T:1:N:0:O:0	6,75,0,146	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	4263	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	116	20	20	0.025423728813559324	0.0	A:0:C:0:G:113:T:3:N:0:O:2	A:0:C:0:G:116:T:0:N:0:O:0	0,61,3,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	4266	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	116	20	20	0.022900763358778626	0.0	A:3:C:0:G:0:T:127:N:0:O:1	A:0:C:0:G:0:T:116:N:0:O:0	0,62,3,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	245	293	20	20	0.036734693877551024	0.017064846416382253	A:0:C:0:G:226:T:9:N:0:O:10	A:0:C:0:G:288:T:5:N:0:O:0	0,193,9,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	126	174	20	20	0.023809523809523808	0.0	A:0:C:0:G:3:T:116:N:0:O:7	A:0:C:0:G:0:T:174:N:0:O:0	0,67,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	4927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	176	20	20	0.04065040650406504	0.0	A:0:C:117:G:0:T:5:N:0:O:1	A:0:C:175:G:0:T:0:N:0:O:1	3,75,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	95	20	20	0.02247191011235955	0.0	A:87:C:0:G:0:T:2:N:0:O:0	A:95:C:0:G:0:T:0:N:0:O:0	2,24,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	95	20	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:95:G:0:T:0:N:0:O:0	2,27,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	175	20	20	0.041237113402061855	0.0	A:4:C:0:G:92:T:0:N:0:O:1	A:0:C:0:G:175:T:0:N:0:O:0	4,28,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	175	20	20	0.019801980198019802	0.0	A:2:C:0:G:0:T:98:N:0:O:1	A:0:C:0:G:0:T:175:N:0:O:0	2,41,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	238	20	20	0.030612244897959183	0.0	A:3:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:237:T:1:N:0:O:0	3,40,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	192	20	20	0.11940298507462686	0.0	A:0:C:57:G:0:T:8:N:0:O:2	A:0:C:192:G:0:T:0:N:0:O:0	0,57,8,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	64	192	20	20	0.03125	0.0	A:0:C:2:G:0:T:61:N:0:O:1	A:0:C:0:G:0:T:192:N:0:O:0	0,44,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	192	20	20	0.039473684210526314	0.0	A:0:C:3:G:0:T:72:N:0:O:1	A:0:C:0:G:0:T:192:N:0:O:0	0,49,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	199	20	20	0.027777777777777776	0.0	A:0:C:70:G:0:T:2:N:0:O:0	A:0:C:199:G:0:T:0:N:0:O:0	0,59,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	198	20	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:87:N:0:O:10	A:0:C:0:G:0:T:197:N:0:O:1	1,45,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	179	20	20	0.024096385542168676	0.0111731843575419	A:0:C:81:G:0:T:2:N:0:O:0	A:0:C:177:G:0:T:2:N:0:O:0	0,63,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	179	20	20	0.0273972602739726	0.0	A:71:C:0:G:2:T:0:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	2,42,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	179	20	20	0.05333333333333334	0.0	A:4:C:0:G:65:T:0:N:0:O:6	A:0:C:0:G:179:T:0:N:0:O:0	4,34,0,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	179	20	20	0.03260869565217391	0.0	A:3:C:1:G:88:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	3,28,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6312	C	A	A	10	mixed variant with conflicting illumina support	Check	False	True	True	87	169	20	20	0.632183908045977	1.0	A:55:C:0:G:0:T:0:N:0:O:32	A:169:C:0:G:0:T:0:N:0:O:0	40,72,15,15	42.922	1442.3	yes	.	.	.	mixed position	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	58	20	20	0.024096385542168676	0.0	A:2:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:58:T:0:N:0:O:0	2,50,0,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6700	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	57	20	20	0.025210084033613446	0.0	A:0:C:3:G:0:T:115:N:0:O:1	A:0:C:0:G:0:T:57:N:0:O:0	0,63,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	220	80	20	20	0.022727272727272728	0.0	A:209:C:0:G:5:T:2:N:0:O:4	A:80:C:0:G:0:T:0:N:0:O:0	5,107,0,113	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	216	80	20	20	0.037037037037037035	0.0	A:1:C:204:G:0:T:8:N:0:O:3	A:0:C:80:G:0:T:0:N:0:O:0	0,140,8,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	6847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	99	20	20	0.03	0.0	A:3:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:99:T:0:N:0:O:0	3,29,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	66	20	20	0.060240963855421686	0.0	A:75:C:0:G:0:T:5:N:0:O:3	A:66:C:0:G:0:T:0:N:0:O:0	0,64,5,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	7224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	174	20	20	0.023255813953488372	0.0	A:0:C:75:G:0:T:2:N:0:O:9	A:0:C:174:G:0:T:0:N:0:O:0	0,37,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	174	20	20	0.024390243902439025	0.0	A:2:C:0:G:79:T:0:N:0:O:1	A:0:C:0:G:173:T:1:N:0:O:0	2,27,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	7266	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	174	20	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:92:N:0:O:1	A:0:C:0:G:0:T:174:N:0:O:0	0,51,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	163	20	20	0.08571428571428572	0.0	A:9:C:0:G:94:T:0:N:0:O:2	A:0:C:0:G:163:T:0:N:0:O:0	9,28,0,77	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	129	20	20	0.019417475728155338	0.0	A:0:C:89:G:0:T:2:N:0:O:12	A:0:C:129:G:0:T:0:N:0:O:0	0,73,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	182	20	20	0.030303030303030304	0.0	A:96:C:0:G:3:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	3,33,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	7864	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	180	20	20	0.020833333333333332	0.0	A:93:C:0:G:2:T:0:N:0:O:1	A:180:C:0:G:0:T:0:N:0:O:0	2,31,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	265	20	20	0.02586206896551724	0.0	A:0:C:3:G:0:T:113:N:0:O:0	A:0:C:0:G:0:T:265:N:0:O:0	0,79,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	8209	T	C	T	16	ignore low frequency variant	Pass	False	False	True	141	265	20	20	0.02127659574468085	0.0	A:0:C:3:G:0:T:135:N:0:O:3	A:0:C:0:G:0:T:265:N:0:O:0	1,82,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	84	20	20	0.030927835051546393	0.0	A:0:C:3:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:84:N:0:O:0	0,64,3,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	57	20	20	0.02857142857142857	0.0	A:0:C:1:G:0:T:34:N:0:O:0	A:0:C:0:G:0:T:57:N:0:O:0	1,32,0,3	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	214	20	20	0.0821917808219178	0.0	A:6:C:0:G:66:T:0:N:0:O:1	A:0:C:0:G:213:T:1:N:0:O:0	6,8,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	8975	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	156	20	20	0.022900763358778626	0.0	A:3:C:0:G:121:T:0:N:0:O:7	A:0:C:0:G:154:T:2:N:0:O:0	3,45,0,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	130	156	20	20	0.023076923076923078	0.0	A:3:C:0:G:0:T:113:N:0:O:14	A:0:C:0:G:0:T:156:N:0:O:0	3,64,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	156	20	20	0.05223880597014925	0.0	A:7:C:0:G:126:T:0:N:0:O:1	A:0:C:0:G:155:T:1:N:0:O:0	7,55,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	9313	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	175	20	20	0.02459016393442623	0.0	A:116:C:0:G:3:T:0:N:0:O:3	A:175:C:0:G:0:T:0:N:0:O:0	3,54,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	9542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	189	306	20	20	0.026455026455026454	0.0	A:0:C:5:G:0:T:180:N:0:O:4	A:0:C:0:G:0:T:306:N:0:O:0	0,136,5,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	207	20	20	0.01904761904761905	0.0	A:0:C:76:G:0:T:2:N:0:O:27	A:1:C:205:G:0:T:0:N:0:O:1	2,96,0,9	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	206	20	20	0.045454545454545456	0.0	A:0:C:2:G:0:T:42:N:0:O:0	A:0:C:0:G:0:T:206:N:0:O:0	2,43,0,1	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	162	20	20	0.05952380952380952	0.0	A:5:C:0:G:79:T:0:N:0:O:0	A:0:C:0:G:162:T:0:N:0:O:0	5,24,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	162	20	20	0.05102040816326531	0.006172839506172839	A:0:C:85:G:0:T:5:N:0:O:8	A:0:C:161:G:0:T:1:N:0:O:0	5,33,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	228	248	20	20	0.021929824561403508	0.0	A:5:C:0:G:221:T:0:N:0:O:2	A:0:C:0:G:248:T:0:N:0:O:0	5,85,0,143	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	178	20	20	0.0196078431372549	0.011235955056179775	A:0:C:97:G:0:T:2:N:0:O:3	A:0:C:175:G:1:T:2:N:0:O:0	0,46,2,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	178	20	20	0.02857142857142857	0.0	A:0:C:0:G:100:T:3:N:0:O:2	A:0:C:0:G:178:T:0:N:0:O:0	3,62,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	171	20	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:3:C:168:G:0:T:0:N:0:O:0	0,71,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	171	20	20	0.028037383177570093	0.0	A:0:C:0:G:3:T:98:N:0:O:6	A:0:C:0:G:0:T:171:N:0:O:0	0,60,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	11010	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	171	20	20	0.022900763358778626	0.0	A:3:C:0:G:127:T:0:N:0:O:1	A:0:C:0:G:171:T:0:N:0:O:0	3,58,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	11083	G	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	40	183	20	20	0.55	0.7978142076502732	A:0:C:0:G:0:T:22:N:0:O:18	A:0:C:0:G:0:T:146:N:0:O:37	7,25,15,15	59.181	698.8	yes	.	.	.	mixed position	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	11455	C	T	T	17	accept high frequency variant	Pass	False	True	True	107	193	20	20	0.9906542056074766	1.0	A:0:C:0:G:0:T:106:N:0:O:1	A:0:C:0:G:0:T:193:N:0:O:0	66,67,40,40	490.0	1293.1	yes	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	192	20	20	0.02830188679245283	0.0	A:99:C:0:G:0:T:3:N:0:O:4	A:192:C:0:G:0:T:0:N:0:O:0	3,49,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	79	20	20	0.04225352112676056	0.0	A:0:C:67:G:0:T:3:N:0:O:1	A:0:C:79:G:0:T:0:N:0:O:0	0,37,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	96	20	20	0.029850746268656716	0.0	A:2:C:0:G:63:T:0:N:0:O:2	A:0:C:0:G:96:T:0:N:0:O:0	0,38,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	184	20	20	0.02459016393442623	0.010869565217391304	A:0:C:0:G:86:T:3:N:0:O:33	A:0:C:0:G:181:T:2:N:0:O:1	0,54,3,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	182	20	20	0.06	0.0	A:47:C:0:G:3:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	0,35,3,15	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	169	20	20	0.02912621359223301	0.0	A:3:C:0:G:81:T:0:N:0:O:19	A:0:C:0:G:166:T:2:N:0:O:1	0,77,3,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	168	20	20	0.0234375	0.0	A:0:C:120:G:0:T:3:N:0:O:5	A:0:C:168:G:0:T:0:N:0:O:0	2,56,1,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12344	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	168	20	20	0.024	0.0	A:114:C:0:G:3:T:0:N:0:O:8	A:168:C:0:G:0:T:0:N:0:O:0	3,59,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12383	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	168	20	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:110:N:0:O:0	A:0:C:0:G:0:T:168:N:0:O:0	0,72,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	168	20	20	0.03773584905660377	0.0	A:0:C:93:G:0:T:4:N:0:O:9	A:0:C:168:G:0:T:0:N:0:O:0	0,70,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	168	20	20	0.06741573033707865	0.0	A:6:C:0:G:76:T:0:N:0:O:7	A:0:C:0:G:168:T:0:N:0:O:0	6,26,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	145	20	20	0.020833333333333332	0.0	A:2:C:91:G:0:T:0:N:0:O:3	A:0:C:145:G:0:T:0:N:0:O:0	0,54,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	145	20	20	0.12658227848101267	0.0	A:0:C:69:G:0:T:10:N:0:O:0	A:0:C:145:G:0:T:0:N:0:O:0	0,61,10,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	193	259	20	20	0.025906735751295335	0.0	A:5:C:0:G:187:T:0:N:0:O:1	A:0:C:0:G:259:T:0:N:0:O:0	5,69,0,124	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	123	20	20	0.029411764705882353	0.0	A:3:C:0:G:98:T:0:N:0:O:1	A:0:C:0:G:123:T:0:N:0:O:0	3,39,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	123	20	20	0.03	0.0	A:91:C:0:G:3:T:0:N:0:O:6	A:123:C:0:G:0:T:0:N:0:O:0	3,36,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	123	20	20	0.041237113402061855	0.008130081300813009	A:0:C:93:G:0:T:4:N:0:O:0	A:0:C:122:G:0:T:1:N:0:O:0	0,63,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	151	20	20	0.022900763358778626	0.0	A:0:C:123:G:1:T:3:N:0:O:4	A:0:C:151:G:0:T:0:N:0:O:0	0,79,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	293	20	20	0.0821917808219178	0.0	A:0:C:66:G:0:T:6:N:0:O:1	A:0:C:293:G:0:T:0:N:0:O:0	0,60,6,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	294	20	20	0.09574468085106383	0.0	A:9:C:0:G:81:T:0:N:0:O:4	A:0:C:0:G:293:T:0:N:0:O:1	9,29,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	13730	C	T	T	17	accept high frequency variant	Pass	False	True	True	136	200	20	20	1.0	1.0	A:0:C:0:G:0:T:136:N:0:O:0	A:0:C:0:G:0:T:200:N:0:O:0	70,70,66,66	70.0	1085.3	yes	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	200	20	20	0.022222222222222223	0.0	A:2:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:200:T:0:N:0:O:0	2,28,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	172	20	20	0.02727272727272727	0.0	A:106:C:0:G:3:T:0:N:0:O:1	A:172:C:0:G:0:T:0:N:0:O:0	3,40,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	14546	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	201	20	20	0.02247191011235955	0.0	A:87:C:0:G:2:T:0:N:0:O:0	A:200:C:0:G:0:T:0:N:0:O:1	2,36,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	187	20	20	0.02912621359223301	0.0	A:0:C:100:G:0:T:3:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,66,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	14730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	187	20	20	0.05660377358490566	0.09090909090909091	A:6:C:0:G:100:T:0:N:0:O:0	A:17:C:0:G:170:T:0:N:0:O:0	2,46,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	188	20	20	0.02857142857142857	0.005319148936170213	A:3:C:99:G:0:T:0:N:0:O:3	A:1:C:187:G:0:T:0:N:0:O:0	3,48,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	243	20	20	0.023809523809523808	0.0	A:0:C:114:G:0:T:3:N:0:O:9	A:1:C:242:G:0:T:0:N:0:O:0	0,66,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	15071	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	253	20	20	0.0297029702970297	0.0	A:3:C:0:G:0:T:96:N:0:O:2	A:0:C:0:G:0:T:253:N:0:O:0	3,48,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	253	20	20	0.0392156862745098	0.0	A:4:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:253:T:0:N:0:O:0	4,32,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	253	20	20	0.06329113924050633	0.0	A:0:C:5:G:0:T:73:N:0:O:1	A:0:C:0:G:0:T:253:N:0:O:0	0,68,5,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15273	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	170	20	20	0.023255813953488372	0.0	A:3:C:126:G:0:T:0:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,71,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	170	20	20	0.02247191011235955	0.0	A:0:C:87:G:0:T:2:N:0:O:0	A:1:C:169:G:0:T:0:N:0:O:0	0,34,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	170	20	20	0.036036036036036036	0.0	A:0:C:107:G:0:T:4:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,69,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	170	20	20	0.022727272727272728	0.0	A:86:C:0:G:2:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	0,44,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	170	20	20	0.027522935779816515	0.0	A:3:C:1:G:104:T:0:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	3,44,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15533	A	C	A	16	ignore low frequency variant	Pass	False	False	True	275	329	20	20	0.02181818181818182	0.0	A:266:C:6:G:0:T:0:N:0:O:3	A:329:C:0:G:0:T:0:N:0:O:0	6,142,0,133	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	194	20	20	0.020833333333333332	0.0	A:3:C:0:G:140:T:0:N:0:O:1	A:0:C:0:G:192:T:2:N:0:O:0	3,56,0,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	175	20	20	0.015873015873015872	0.0	A:1:C:1:G:0:T:45:N:0:O:16	A:0:C:0:G:0:T:175:N:0:O:0	0,35,1,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	175	20	20	0.18181818181818182	0.0	A:1:C:44:G:0:T:10:N:0:O:0	A:2:C:173:G:0:T:0:N:0:O:0	0,30,10,25	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	93	71	20	20	0.03225806451612903	0.0	A:0:C:89:G:3:T:1:N:0:O:0	A:0:C:71:G:0:T:0:N:0:O:0	3,40,0,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	48	20	20	0.02247191011235955	0.0	A:2:C:0:G:85:T:0:N:0:O:2	A:0:C:0:G:48:T:0:N:0:O:0	2,17,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	205	20	20	0.02	0.0	A:0:C:0:G:2:T:98:N:0:O:0	A:0:C:1:G:0:T:204:N:0:O:0	0,68,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	205	20	20	0.03529411764705882	0.0	A:82:C:0:G:3:T:0:N:0:O:0	A:205:C:0:G:0:T:0:N:0:O:0	0,40,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	16950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	205	20	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:88:N:0:O:1	A:0:C:0:G:0:T:205:N:0:O:0	1,59,1,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	205	20	20	0.021505376344086023	0.0	A:91:C:2:G:0:T:0:N:0:O:0	A:205:C:0:G:0:T:0:N:0:O:0	2,47,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	160	336	20	20	0.025	0.0	A:4:C:0:G:151:T:0:N:0:O:5	A:0:C:0:G:335:T:1:N:0:O:0	4,30,0,130	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	149	20	20	0.034482758620689655	0.0	A:83:C:0:G:3:T:0:N:0:O:1	A:149:C:0:G:0:T:0:N:0:O:0	3,17,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	149	20	20	0.03614457831325301	0.0	A:3:C:0:G:0:T:77:N:0:O:3	A:0:C:0:G:0:T:149:N:0:O:0	3,19,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	147	20	20	0.03529411764705882	0.0	A:3:C:0:G:82:T:0:N:0:O:0	A:0:C:0:G:147:T:0:N:0:O:0	3,27,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	147	20	20	0.07894736842105263	0.0	A:0:C:67:G:0:T:6:N:0:O:3	A:1:C:146:G:0:T:0:N:0:O:0	0,53,6,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	17477	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	147	20	20	0.02040816326530612	0.0	A:95:C:0:G:0:T:2:N:0:O:1	A:147:C:0:G:0:T:0:N:0:O:0	0,44,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	147	20	20	0.047058823529411764	0.0	A:4:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:147:T:0:N:0:O:0	4,27,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	147	20	20	0.02127659574468085	0.0	A:0:C:91:G:0:T:2:N:0:O:1	A:0:C:147:G:0:T:0:N:0:O:0	0,55,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	147	20	20	0.020202020202020204	0.0	A:0:C:2:G:0:T:97:N:0:O:0	A:0:C:0:G:0:T:147:N:0:O:0	0,62,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	147	20	20	0.022727272727272728	0.0	A:0:C:85:G:0:T:2:N:0:O:1	A:0:C:147:G:0:T:0:N:0:O:0	0,42,2,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	308	20	20	0.028409090909090908	0.003246753246753247	A:0:C:170:G:0:T:5:N:0:O:1	A:1:C:306:G:0:T:1:N:0:O:0	0,106,5,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	304	20	20	0.03424657534246575	0.0	A:0:C:137:G:0:T:5:N:0:O:4	A:3:C:301:G:0:T:0:N:0:O:0	2,99,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	165	20	20	0.07692307692307693	0.0	A:0:C:60:G:0:T:5:N:0:O:0	A:0:C:165:G:0:T:0:N:0:O:0	0,36,5,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	165	20	20	0.06521739130434782	0.0	A:79:C:0:G:0:T:6:N:0:O:7	A:165:C:0:G:0:T:0:N:0:O:0	0,38,6,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	165	20	20	0.12380952380952381	0.0	A:13:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	0,59,13,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	165	20	20	0.021505376344086023	0.0	A:2:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	2,29,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	165	20	20	0.021505376344086023	0.0	A:86:C:1:G:2:T:0:N:0:O:4	A:165:C:0:G:0:T:0:N:0:O:0	2,22,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	165	20	20	0.0547945205479452	0.0	A:4:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:165:T:0:N:0:O:0	4,19,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	18248	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	170	20	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:1:C:169:G:0:T:0:N:0:O:0	0,38,2,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	169	20	20	0.024242424242424242	0.0	A:0:C:160:G:0:T:4:N:0:O:1	A:0:C:169:G:0:T:0:N:0:O:0	0,99,4,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	18535	A	G	A	16	ignore low frequency variant	Pass	False	False	True	184	243	20	20	0.021739130434782608	0.0	A:178:C:0:G:4:T:0:N:0:O:2	A:243:C:0:G:0:T:0:N:0:O:0	4,73,0,111	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	169	20	20	0.02702702702702703	0.0	A:2:C:0:G:71:T:0:N:0:O:1	A:0:C:0:G:169:T:0:N:0:O:0	2,24,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	169	20	20	0.022222222222222223	0.0	A:41:C:0:G:0:T:1:N:0:O:3	A:169:C:0:G:0:T:0:N:0:O:0	0,26,1,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	18885	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	169	20	20	0.02702702702702703	0.0	A:0:C:107:G:0:T:3:N:0:O:1	A:2:C:167:G:0:T:0:N:0:O:0	1,40,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	38	20	20	0.026785714285714284	0.0	A:0:C:109:G:0:T:3:N:0:O:0	A:0:C:38:G:0:T:0:N:0:O:0	0,69,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	29	20	20	0.15492957746478872	0.0	A:0:C:59:G:0:T:11:N:0:O:1	A:0:C:29:G:0:T:0:N:0:O:0	0,53,11,18	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	23	20	20	0.02830188679245283	0.0	A:3:C:0:G:102:T:0:N:0:O:1	A:0:C:0:G:23:T:0:N:0:O:0	3,37,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	214	20	20	0.03260869565217391	0.0	A:0:C:3:G:0:T:87:N:0:O:2	A:1:C:0:G:0:T:213:N:0:O:0	0,56,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	267	20	20	0.02040816326530612	0.0	A:0:C:95:G:0:T:2:N:0:O:1	A:1:C:266:G:0:T:0:N:0:O:0	0,57,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	20326	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	162	20	20	0.022900763358778626	0.0	A:3:C:0:G:122:T:0:N:0:O:6	A:0:C:0:G:162:T:0:N:0:O:0	3,63,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	189	20	20	0.05	0.0	A:90:C:0:G:5:T:0:N:0:O:5	A:189:C:0:G:0:T:0:N:0:O:0	5,29,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	189	20	20	0.02564102564102564	0.0	A:2:C:0:G:76:T:0:N:0:O:0	A:0:C:0:G:189:T:0:N:0:O:0	2,32,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	189	20	20	0.02197802197802198	0.005291005291005291	A:2:C:0:G:82:T:0:N:0:O:7	A:1:C:0:G:186:T:2:N:0:O:0	0,17,2,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	33	20	20	0.10989010989010989	0.0	A:0:C:0:G:74:T:10:N:0:O:7	A:0:C:0:G:33:T:0:N:0:O:0	0,69,10,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	62	20	20	0.043859649122807015	0.0	A:0:C:0:G:105:T:5:N:0:O:4	A:0:C:0:G:62:T:0:N:0:O:0	0,73,5,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	63	20	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:0:C:63:G:0:T:0:N:0:O:0	0,60,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	71	20	20	0.021505376344086023	0.0	A:2:C:0:G:90:T:0:N:0:O:1	A:0:C:0:G:71:T:0:N:0:O:0	2,22,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	71	20	20	0.026785714285714284	0.0	A:0:C:109:G:0:T:3:N:0:O:0	A:0:C:71:G:0:T:0:N:0:O:0	0,75,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	58	20	20	0.014705882352941176	0.0	A:0:C:1:G:0:T:44:N:0:O:23	A:0:C:0:G:0:T:58:N:0:O:0	0,50,1,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	200	20	20	0.044444444444444446	0.0	A:4:C:0:G:84:T:0:N:0:O:2	A:0:C:0:G:200:T:0:N:0:O:0	4,21,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	241	20	20	0.024793388429752067	0.0	A:0:C:3:G:0:T:118:N:0:O:0	A:0:C:0:G:0:T:241:N:0:O:0	0,70,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	174	20	20	0.020689655172413793	0.0	A:3:C:0:G:134:T:0:N:0:O:8	A:0:C:0:G:173:T:1:N:0:O:0	3,58,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	136	191	20	20	0.029411764705882353	0.0	A:0:C:0:G:4:T:132:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	4,50,0,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	22448	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	37	20	20	0.0273972602739726	0.0	A:0:C:68:G:0:T:2:N:0:O:3	A:0:C:36:G:0:T:0:N:0:O:1	0,55,2,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	37	20	20	0.044444444444444446	0.0	A:43:C:0:G:2:T:0:N:0:O:0	A:37:C:0:G:0:T:0:N:0:O:0	0,4,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	160	174	20	20	0.025	0.0	A:4:C:0:G:156:T:0:N:0:O:0	A:0:C:0:G:174:T:0:N:0:O:0	4,34,0,126	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	286	168	20	20	0.02097902097902098	0.0	A:0:C:0:G:6:T:231:N:0:O:49	A:0:C:0:G:0:T:168:N:0:O:0	0,182,6,104	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	190	20	20	0.023809523809523808	0.0	A:81:C:1:G:2:T:0:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	2,18,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	164	20	20	0.03937007874015748	0.0	A:0:C:121:G:0:T:5:N:0:O:1	A:0:C:164:G:0:T:0:N:0:O:0	0,98,5,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	23929	C	T	T	17	accept high frequency variant	Pass	False	True	True	135	163	20	20	0.9925925925925926	0.9938650306748467	A:1:C:0:G:0:T:134:N:0:O:0	A:1:C:0:G:0:T:162:N:0:O:0	75,76,59,59	198.097	1068.0	yes	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	180	164	20	20	0.03333333333333333	0.0	A:172:C:0:G:0:T:6:N:0:O:2	A:164:C:0:G:0:T:0:N:0:O:0	6,93,0,87	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	164	20	20	0.08045977011494253	0.0	A:7:C:0:G:0:T:80:N:0:O:0	A:0:C:0:G:0:T:164:N:0:O:0	7,28,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	164	20	20	0.03225806451612903	0.006097560975609756	A:3:C:0:G:90:T:0:N:0:O:0	A:1:C:0:G:163:T:0:N:0:O:0	3,13,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	164	20	20	0.020618556701030927	0.0	A:2:C:0:G:94:T:0:N:0:O:1	A:0:C:0:G:164:T:0:N:0:O:0	2,18,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	164	20	20	0.02857142857142857	0.0	A:0:C:102:G:0:T:3:N:0:O:0	A:0:C:164:G:0:T:0:N:0:O:0	0,84,3,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24278	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	167	20	20	0.027777777777777776	0.0	A:2:C:0:G:1:T:69:N:0:O:0	A:0:C:0:G:0:T:167:N:0:O:0	2,10,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	167	20	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:1:C:166:G:0:T:0:N:0:O:0	1,37,1,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	167	20	20	0.02702702702702703	0.0	A:106:C:0:G:3:T:0:N:0:O:2	A:166:C:1:G:0:T:0:N:0:O:0	3,42,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	146	174	20	20	0.0273972602739726	0.0	A:139:C:4:G:0:T:0:N:0:O:3	A:174:C:0:G:0:T:0:N:0:O:0	4,74,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	174	20	20	0.041176470588235294	0.0	A:0:C:162:G:0:T:7:N:0:O:1	A:1:C:173:G:0:T:0:N:0:O:0	0,96,7,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	179	20	20	0.018018018018018018	0.0	A:2:C:0:G:93:T:0:N:0:O:16	A:0:C:0:G:176:T:3:N:0:O:0	2,39,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	179	20	20	0.0297029702970297	0.0	A:97:C:0:G:3:T:0:N:0:O:1	A:179:C:0:G:0:T:0:N:0:O:0	3,32,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	179	20	20	0.03333333333333333	0.0	A:3:C:0:G:86:T:0:N:0:O:1	A:0:C:0:G:179:T:0:N:0:O:0	0,63,3,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	179	20	20	0.022727272727272728	0.0	A:0:C:0:G:2:T:86:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,62,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	24982	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	179	20	20	0.047619047619047616	0.0	A:0:C:2:G:1:T:38:N:0:O:1	A:0:C:0:G:0:T:179:N:0:O:0	2,34,0,8	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	180	20	20	0.04878048780487805	0.0	A:39:C:0:G:2:T:0:N:0:O:0	A:180:C:0:G:0:T:0:N:0:O:0	0,0,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	180	20	20	0.02247191011235955	0.0	A:2:C:0:G:84:T:0:N:0:O:3	A:0:C:0:G:179:T:1:N:0:O:0	0,18,2,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	173	20	20	0.038461538461538464	0.0	A:100:C:0:G:0:T:4:N:0:O:0	A:173:C:0:G:0:T:0:N:0:O:0	4,49,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	173	20	20	0.026785714285714284	0.0	A:108:C:0:G:3:T:0:N:0:O:1	A:173:C:0:G:0:T:0:N:0:O:0	3,42,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25512	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	173	20	20	0.020202020202020204	0.0	A:88:C:1:G:0:T:2:N:0:O:8	A:173:C:0:G:0:T:0:N:0:O:0	1,36,1,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25702	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	173	20	20	0.022222222222222223	0.0	A:0:C:87:G:0:T:2:N:0:O:1	A:0:C:173:G:0:T:0:N:0:O:0	0,50,2,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	174	20	20	0.024691358024691357	0.0	A:0:C:74:G:0:T:2:N:0:O:5	A:0:C:174:G:0:T:0:N:0:O:0	0,68,2,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	61	174	20	20	0.08196721311475409	0.0	A:55:C:5:G:0:T:0:N:0:O:1	A:174:C:0:G:0:T:0:N:0:O:0	2,36,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	174	20	20	0.030927835051546393	0.0	A:0:C:92:G:0:T:3:N:0:O:2	A:0:C:174:G:0:T:0:N:0:O:0	0,63,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	174	20	20	0.04597701149425287	0.0	A:81:C:0:G:4:T:0:N:0:O:2	A:174:C:0:G:0:T:0:N:0:O:0	4,26,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	174	20	20	0.020618556701030927	0.0	A:0:C:93:G:0:T:2:N:0:O:2	A:0:C:174:G:0:T:0:N:0:O:0	1,49,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	178	20	20	0.021052631578947368	0.0	A:0:C:74:G:0:T:2:N:0:O:19	A:1:C:177:G:0:T:0:N:0:O:0	0,88,2,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	178	20	20	0.017094017094017096	0.0	A:0:C:82:G:0:T:2:N:0:O:33	A:0:C:178:G:0:T:0:N:0:O:0	0,98,2,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	178	20	20	0.047058823529411764	0.0	A:0:C:81:G:0:T:4:N:0:O:0	A:1:C:177:G:0:T:0:N:0:O:0	0,49,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	178	20	20	0.03225806451612903	0.0	A:3:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:178:T:0:N:0:O:0	3,26,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	226	325	20	20	0.022123893805309734	0.0	A:5:C:0:G:0:T:220:N:0:O:1	A:0:C:0:G:0:T:325:N:0:O:0	5,110,0,116	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	326	20	20	0.045714285714285714	0.0	A:0:C:167:G:0:T:8:N:0:O:0	A:1:C:325:G:0:T:0:N:0:O:0	0,134,8,41	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	219	325	20	20	0.0319634703196347	0.0	A:0:C:7:G:0:T:212:N:0:O:0	A:0:C:0:G:0:T:325:N:0:O:0	0,142,7,77	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26608	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	162	20	20	0.027777777777777776	0.0	A:2:C:0:G:0:T:68:N:0:O:2	A:0:C:0:G:1:T:161:N:0:O:0	2,30,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	162	20	20	0.041666666666666664	0.0	A:0:C:4:G:0:T:92:N:0:O:0	A:0:C:0:G:0:T:162:N:0:O:0	0,62,4,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	162	20	20	0.021505376344086023	0.0	A:86:C:0:G:0:T:2:N:0:O:5	A:162:C:0:G:0:T:0:N:0:O:0	2,25,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	162	20	20	0.0759493670886076	0.0	A:6:C:0:G:73:T:0:N:0:O:0	A:0:C:0:G:162:T:0:N:0:O:0	6,13,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	162	20	20	0.05747126436781609	0.0	A:0:C:81:G:0:T:5:N:0:O:1	A:0:C:162:G:0:T:0:N:0:O:0	0,65,5,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	157	20	20	0.020833333333333332	0.0	A:2:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	2,37,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	106	159	20	20	0.02830188679245283	0.0	A:1:C:3:G:102:T:0:N:0:O:0	A:0:C:0:G:157:T:2:N:0:O:0	3,38,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	159	20	20	0.034482758620689655	0.0	A:81:C:0:G:3:T:0:N:0:O:3	A:159:C:0:G:0:T:0:N:0:O:0	3,25,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	159	20	20	0.06060606060606061	0.0	A:0:C:60:G:0:T:4:N:0:O:2	A:0:C:159:G:0:T:0:N:0:O:0	0,59,4,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	27106	C	G	C	16	ignore low frequency variant	Pass	False	False	True	88	159	20	20	0.022727272727272728	0.0	A:0:C:84:G:2:T:1:N:0:O:1	A:0:C:159:G:0:T:0:N:0:O:0	0,66,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	27457	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	149	20	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:148:T:1:N:0:O:0	2,23,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	149	20	20	0.025	0.0	A:2:C:0:G:77:T:0:N:0:O:1	A:0:C:0:G:149:T:0:N:0:O:0	2,16,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	153	20	20	0.024691358024691357	0.0	A:2:C:0:G:75:T:0:N:0:O:4	A:0:C:0:G:152:T:1:N:0:O:0	2,11,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	28220	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	160	20	20	0.020618556701030927	0.0	A:90:C:0:G:2:T:1:N:0:O:4	A:160:C:0:G:0:T:0:N:0:O:0	1,45,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	28311	C	T	T	17	accept high frequency variant	Pass	False	True	True	84	160	20	20	0.9880952380952381	1.0	A:0:C:1:G:0:T:83:N:0:O:0	A:0:C:0:G:0:T:160:N:0:O:0	63,64,20,20	408.68	1595.7	yes	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	160	20	20	0.03773584905660377	0.0	A:4:C:89:G:0:T:2:N:0:O:11	A:0:C:160:G:0:T:0:N:0:O:0	4,67,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	160	20	20	0.022222222222222223	0.0	A:83:C:0:G:0:T:2:N:0:O:5	A:160:C:0:G:0:T:0:N:0:O:0	2,31,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	28567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	175	20	20	0.023809523809523808	0.0	A:0:C:122:G:0:T:3:N:0:O:1	A:0:C:175:G:0:T:0:N:0:O:0	0,64,3,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	175	20	20	0.020833333333333332	0.0	A:2:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:175:T:0:N:0:O:0	2,33,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	147	169	20	20	0.02040816326530612	0.005917159763313609	A:3:C:107:G:0:T:1:N:0:O:36	A:1:C:167:G:0:T:0:N:0:O:1	3,77,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	241	20	20	0.11458333333333333	0.0	A:11:C:0:G:84:T:0:N:0:O:1	A:0:C:0:G:241:T:0:N:0:O:0	11,28,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	29052	A	T	A	16	ignore low frequency variant	Pass	False	False	True	58	177	20	20	0.034482758620689655	0.0	A:56:C:0:G:0:T:2:N:0:O:0	A:177:C:0:G:0:T:0:N:0:O:0	2,31,0,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	179	20	20	0.02666666666666667	0.0	A:2:C:0:G:68:T:0:N:0:O:5	A:0:C:0:G:179:T:0:N:0:O:0	2,7,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	29060	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	179	20	20	0.020202020202020204	0.0	A:97:C:0:G:0:T:2:N:0:O:0	A:179:C:0:G:0:T:0:N:0:O:0	2,30,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	179	20	20	0.045871559633027525	0.0	A:5:C:98:G:0:T:0:N:0:O:6	A:0:C:179:G:0:T:0:N:0:O:0	5,60,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	72	179	20	20	0.027777777777777776	0.0	A:0:C:2:G:70:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	1,34,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	126	48	20	20	0.023809523809523808	0.0	A:0:C:3:G:114:T:0:N:0:O:9	A:0:C:0:G:48:T:0:N:0:O:0	3,46,0,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00063	artic-pipeline	NB08	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	316	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	6348	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	151	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00063	artic-pipeline	NB08	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	178	20	20	0.02	0.0	A:0:C:1:G:0:T:49:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:0	0,9,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	76	170	20	20	1.0	1.0	A:0:C:0:G:0:T:76:N:0:O:0	A:0:C:0:G:0:T:170:N:0:O:0	11,11,65,65	279.237	1719.6	yes	.	.	.	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	194	20	20	0.02702702702702703	0.0	A:0:C:2:G:0:T:64:N:0:O:8	A:0:C:0:G:0:T:194:N:0:O:0	1,19,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	937	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	143	20	20	0.027777777777777776	0.0	A:0:C:3:G:0:T:104:N:0:O:1	A:0:C:0:G:0:T:143:N:0:O:0	0,61,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1005	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	178	20	20	0.034482758620689655	0.0	A:53:C:0:G:2:T:0:N:0:O:3	A:178:C:0:G:0:T:0:N:0:O:0	0,9,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	178	20	20	0.02702702702702703	0.0	A:2:C:0:G:70:T:0:N:0:O:2	A:0:C:0:G:178:T:0:N:0:O:0	2,8,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	130	178	20	20	1.0	1.0	A:0:C:0:G:0:T:130:N:0:O:0	A:0:C:0:G:0:T:178:N:0:O:0	68,68,62,62	350.0	1374.6	yes	.	.	.	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	1222	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	178	20	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:89:N:0:O:0	A:0:C:0:G:1:T:177:N:0:O:0	0,69,2,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	178	20	20	0.022222222222222223	0.0	A:2:C:0:G:87:T:0:N:0:O:1	A:0:C:0:G:177:T:1:N:0:O:0	2,25,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	205	20	20	0.038461538461538464	0.0	A:74:C:3:G:0:T:0:N:0:O:1	A:205:C:0:G:0:T:0:N:0:O:0	3,47,0,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	205	20	20	0.027777777777777776	0.0	A:2:C:0:G:70:T:0:N:0:O:0	A:0:C:0:G:204:T:1:N:0:O:0	2,5,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	205	20	20	0.02	0.0	A:0:C:78:G:0:T:2:N:0:O:20	A:0:C:205:G:0:T:0:N:0:O:0	0,84,2,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	204	20	20	0.045454545454545456	0.004901960784313725	A:63:C:0:G:3:T:0:N:0:O:0	A:203:C:0:G:1:T:0:N:0:O:0	1,8,2,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	205	20	20	0.023529411764705882	0.0	A:2:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:204:T:1:N:0:O:0	0,21,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	206	20	20	0.020689655172413793	0.0	A:3:C:0:G:121:T:0:N:0:O:21	A:0:C:0:G:204:T:1:N:0:O:1	1,64,2,81	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	204	20	20	0.02	0.0	A:98:C:0:G:2:T:0:N:0:O:0	A:204:C:0:G:0:T:0:N:0:O:0	0,53,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	205	20	20	0.027777777777777776	0.0	A:34:C:0:G:1:T:0:N:0:O:1	A:205:C:0:G:0:T:0:N:0:O:0	0,1,1,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	2028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	162	20	20	0.022900763358778626	0.0	A:0:C:126:G:0:T:3:N:0:O:2	A:1:C:161:G:0:T:0:N:0:O:0	0,66,3,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	2029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	162	20	20	0.023809523809523808	0.0	A:0:C:3:G:0:T:119:N:0:O:4	A:0:C:0:G:0:T:162:N:0:O:0	0,60,3,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	2194	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	162	20	20	0.019801980198019802	0.0	A:91:C:0:G:2:T:0:N:0:O:8	A:162:C:0:G:0:T:0:N:0:O:0	2,42,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	162	20	20	0.03669724770642202	0.0	A:4:C:0:G:90:T:0:N:0:O:15	A:0:C:0:G:162:T:0:N:0:O:0	4,38,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	162	20	20	0.11956521739130435	0.0	A:11:C:0:G:80:T:0:N:0:O:1	A:0:C:0:G:162:T:0:N:0:O:0	11,28,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	2307	T	A	T	16	ignore low frequency variant	Pass	False	False	True	123	294	20	20	0.024390243902439025	0.0	A:3:C:0:G:0:T:120:N:0:O:0	A:0:C:0:G:0:T:294:N:0:O:0	3,60,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	2509	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	185	20	20	0.020618556701030927	0.0	A:0:C:92:G:0:T:2:N:0:O:3	A:0:C:185:G:0:T:0:N:0:O:0	1,53,1,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	183	20	20	0.02197802197802198	0.0	A:2:C:0:G:88:T:0:N:0:O:1	A:0:C:0:G:183:T:0:N:0:O:0	2,29,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	193	20	20	0.02857142857142857	0.0	A:0:C:98:G:0:T:3:N:0:O:4	A:1:C:192:G:0:T:0:N:0:O:0	0,83,3,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3015	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	186	20	20	0.02197802197802198	0.0	A:0:C:89:G:0:T:2:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,40,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3037	C	T	T	9	mixed homopolymer validated by illumina	Pass	True	True	True	126	184	20	20	0.6984126984126984	1.0	A:0:C:0:G:0:T:88:N:0:O:38	A:0:C:0:G:0:T:184:N:0:O:0	49,87,39,39	397.47	1387.1	yes	.	.	.	mixed position	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	186	20	20	0.045454545454545456	0.0	A:0:C:0:G:71:T:4:N:0:O:13	A:0:C:0:G:186:T:0:N:0:O:0	0,63,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	3209	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	174	20	20	0.02608695652173913	0.0	A:3:C:0:G:112:T:0:N:0:O:0	A:0:C:0:G:172:T:2:N:0:O:0	3,39,0,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3210	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	174	20	20	0.02727272727272727	0.0	A:107:C:0:G:0:T:3:N:0:O:0	A:173:C:0:G:1:T:0:N:0:O:0	3,40,0,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	174	20	20	0.02912621359223301	0.0	A:0:C:3:G:0:T:100:N:0:O:0	A:0:C:0:G:0:T:174:N:0:O:0	0,69,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	174	20	20	0.021897810218978103	0.0	A:122:C:0:G:3:T:0:N:0:O:12	A:173:C:0:G:0:T:1:N:0:O:0	3,49,0,88	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3301	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	174	20	20	0.0196078431372549	0.0	A:98:C:0:G:2:T:0:N:0:O:2	A:174:C:0:G:0:T:0:N:0:O:0	2,52,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3304	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	174	20	20	0.02608695652173913	0.0	A:3:C:0:G:106:T:0:N:0:O:6	A:0:C:0:G:174:T:0:N:0:O:0	3,36,0,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	174	20	20	0.02247191011235955	0.0	A:0:C:84:G:0:T:2:N:0:O:3	A:0:C:174:G:0:T:0:N:0:O:0	0,53,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	174	20	20	0.039473684210526314	0.0	A:0:C:68:G:0:T:3:N:0:O:5	A:0:C:174:G:0:T:0:N:0:O:0	0,39,3,37	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	174	20	20	0.034482758620689655	0.0	A:111:C:0:G:4:T:0:N:0:O:1	A:174:C:0:G:0:T:0:N:0:O:0	4,41,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	174	20	20	0.030303030303030304	0.0	A:3:C:0:G:94:T:0:N:0:O:2	A:0:C:0:G:174:T:0:N:0:O:0	3,34,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	170	20	20	0.031914893617021274	0.0	A:0:C:91:G:0:T:3:N:0:O:0	A:0:C:170:G:0:T:0:N:0:O:0	0,71,3,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	125	20	20	0.020833333333333332	0.0	A:0:C:0:G:2:T:79:N:0:O:15	A:0:C:0:G:0:T:125:N:0:O:0	0,49,2,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	126	20	20	0.023255813953488372	0.0	A:0:C:0:G:80:T:2:N:0:O:4	A:0:C:0:G:126:T:0:N:0:O:0	2,46,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	125	20	20	0.06578947368421052	0.0	A:5:C:0:G:71:T:0:N:0:O:0	A:0:C:0:G:123:T:2:N:0:O:0	0,47,5,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3876	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	126	20	20	0.020202020202020204	0.0	A:0:C:96:G:0:T:2:N:0:O:1	A:0:C:126:G:0:T:0:N:0:O:0	2,44,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	121	126	20	20	0.03305785123966942	0.0	A:4:C:0:G:0:T:108:N:0:O:9	A:0:C:0:G:0:T:126:N:0:O:0	4,69,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	126	20	20	0.02608695652173913	0.0	A:111:C:0:G:3:T:0:N:0:O:1	A:126:C:0:G:0:T:0:N:0:O:0	3,49,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	235	254	20	20	0.02127659574468085	0.0	A:5:C:0:G:216:T:0:N:0:O:14	A:0:C:0:G:254:T:0:N:0:O:0	5,76,0,159	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	128	20	20	0.02702702702702703	0.0	A:0:C:71:G:0:T:2:N:0:O:1	A:0:C:128:G:0:T:0:N:0:O:0	1,62,1,12	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4308	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	128	20	20	0.031578947368421054	0.0234375	A:89:C:0:G:3:T:0:N:0:O:3	A:125:C:0:G:3:T:0:N:0:O:0	0,39,3,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	239	313	20	20	0.029288702928870293	0.0	A:0:C:0:G:225:T:7:N:0:O:7	A:0:C:0:G:313:T:0:N:0:O:0	0,183,7,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	240	313	20	20	0.025	0.0	A:6:C:0:G:232:T:0:N:0:O:2	A:0:C:0:G:313:T:0:N:0:O:0	0,146,6,94	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	235	313	20	20	0.029787234042553193	0.0	A:0:C:207:G:0:T:7:N:0:O:21	A:0:C:313:G:0:T:0:N:0:O:0	0,153,7,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	185	20	20	0.021897810218978103	0.0	A:124:C:0:G:0:T:3:N:0:O:10	A:184:C:0:G:1:T:0:N:0:O:0	0,79,3,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4684	T	C	T	16	ignore low frequency variant	Pass	False	False	True	133	187	20	20	0.022556390977443608	0.0	A:0:C:3:G:0:T:128:N:0:O:2	A:0:C:0:G:0:T:187:N:0:O:0	0,74,3,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	4841	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	187	20	20	0.02	0.0	A:2:C:0:G:96:T:0:N:0:O:2	A:0:C:0:G:185:T:2:N:0:O:0	2,33,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	41	20	20	0.028037383177570093	0.0	A:0:C:104:G:0:T:3:N:0:O:0	A:0:C:41:G:0:T:0:N:0:O:0	0,66,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	59	20	20	0.031914893617021274	0.0	A:3:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:59:T:0:N:0:O:0	3,22,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	71	20	20	0.02040816326530612	0.0	A:95:C:2:G:0:T:0:N:0:O:1	A:71:C:0:G:0:T:0:N:0:O:0	2,41,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	196	20	20	0.021052631578947368	0.0	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:196:G:0:T:0:N:0:O:0	1,58,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	197	20	20	0.08333333333333333	0.0	A:0:C:65:G:0:T:6:N:0:O:1	A:0:C:196:G:0:T:0:N:0:O:1	0,61,6,11	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	196	20	20	0.038461538461538464	0.0	A:0:C:3:G:0:T:73:N:0:O:2	A:0:C:0:G:0:T:196:N:0:O:0	0,53,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	5852	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	196	20	20	0.025210084033613446	0.0	A:114:C:0:G:0:T:3:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	3,61,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	186	20	20	0.028846153846153848	0.005376344086021506	A:0:C:101:G:0:T:3:N:0:O:0	A:0:C:185:G:0:T:1:N:0:O:0	2,42,1,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6051	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	188	20	20	0.024	0.0	A:122:C:0:G:3:T:0:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:1	1,60,2,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	188	20	20	0.08045977011494253	0.0	A:0:C:78:G:0:T:7:N:0:O:2	A:1:C:187:G:0:T:0:N:0:O:0	0,67,7,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	218	20	20	0.025974025974025976	0.0	A:2:C:0:G:74:T:0:N:0:O:1	A:0:C:0:G:218:T:0:N:0:O:0	2,31,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	41	20	20	0.018867924528301886	0.0	A:0:C:0:G:2:T:98:N:0:O:6	A:0:C:0:G:0:T:41:N:0:O:0	0,70,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	41	20	20	0.02197802197802198	0.0	A:2:C:0:G:89:T:0:N:0:O:0	A:0:C:0:G:41:T:0:N:0:O:0	2,51,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	193	35	20	20	0.04145077720207254	0.0	A:178:C:0:G:8:T:0:N:0:O:7	A:35:C:0:G:0:T:0:N:0:O:0	8,76,0,117	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	195	35	20	20	0.02564102564102564	0.0	A:0:C:185:G:0:T:5:N:0:O:5	A:0:C:35:G:0:T:0:N:0:O:0	1,126,4,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	34	20	20	0.021739130434782608	0.0	A:2:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:34:T:0:N:0:O:0	2,36,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	6889	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	34	20	20	0.024793388429752067	0.0	A:110:C:0:G:0:T:3:N:0:O:8	A:34:C:0:G:0:T:0:N:0:O:0	0,60,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	19	20	20	0.06097560975609756	0.0	A:76:C:0:G:0:T:5:N:0:O:1	A:19:C:0:G:0:T:0:N:0:O:0	0,65,5,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	7173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	183	20	20	0.020202020202020204	0.0	A:0:C:92:G:0:T:2:N:0:O:5	A:0:C:183:G:0:T:0:N:0:O:0	0,68,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	170	20	20	0.10810810810810811	0.0	A:8:C:0:G:65:T:0:N:0:O:1	A:0:C:0:G:169:T:1:N:0:O:0	8,14,0,60	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	171	20	20	0.017391304347826087	0.0	A:0:C:82:G:1:T:2:N:0:O:30	A:0:C:170:G:0:T:0:N:0:O:1	0,82,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	7615	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	170	20	20	0.022727272727272728	0.0	A:2:C:0:G:81:T:0:N:0:O:5	A:0:C:0:G:168:T:2:N:0:O:0	0,60,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	52	20	20	0.01904761904761905	0.0	A:0:C:2:G:0:T:98:N:0:O:5	A:0:C:0:G:0:T:52:N:0:O:0	0,64,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	136	191	20	20	0.022058823529411766	0.0	A:131:C:3:G:0:T:0:N:0:O:2	A:191:C:0:G:0:T:0:N:0:O:0	0,86,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	198	20	20	0.024390243902439025	0.0	A:0:C:3:G:0:T:119:N:0:O:1	A:0:C:0:G:0:T:198:N:0:O:0	0,83,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8117	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	198	20	20	0.03	0.0	A:3:C:0:G:93:T:0:N:0:O:4	A:0:C:0:G:198:T:0:N:0:O:0	3,51,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8380	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	30	20	20	0.02857142857142857	0.0	A:68:C:0:G:2:T:0:N:0:O:0	A:30:C:0:G:0:T:0:N:0:O:0	2,26,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	30	20	20	0.029411764705882353	0.0	A:3:C:0:G:95:T:0:N:0:O:4	A:0:C:0:G:30:T:0:N:0:O:0	3,36,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8470	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	34	20	20	0.02127659574468085	0.0	A:2:C:0:G:90:T:1:N:0:O:1	A:0:C:0:G:34:T:0:N:0:O:0	2,25,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	34	20	20	0.04081632653061224	0.0	A:0:C:4:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:34:N:0:O:0	0,62,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8675	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	65	20	20	0.02040816326530612	0.0	A:95:C:2:G:0:T:0:N:0:O:1	A:65:C:0:G:0:T:0:N:0:O:0	0,46,2,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8676	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	65	20	20	0.021739130434782608	0.0	A:2:C:0:G:86:T:0:N:0:O:4	A:0:C:0:G:65:T:0:N:0:O:0	0,41,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	57	20	20	0.08536585365853659	0.0	A:7:C:0:G:69:T:0:N:0:O:6	A:0:C:0:G:57:T:0:N:0:O:0	7,10,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	157	20	20	0.031578947368421054	0.0	A:3:C:0:G:0:T:86:N:0:O:6	A:0:C:0:G:0:T:157:N:0:O:0	3,32,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	157	20	20	0.05660377358490566	0.0	A:6:C:0:G:99:T:0:N:0:O:1	A:0:C:0:G:157:T:0:N:0:O:0	6,36,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	139	212	20	20	0.02158273381294964	0.0047169811320754715	A:0:C:0:G:136:T:3:N:0:O:0	A:0:C:0:G:211:T:1:N:0:O:0	0,72,3,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	101	20	20	0.03488372093023256	0.0	A:0:C:73:G:0:T:3:N:0:O:10	A:0:C:101:G:0:T:0:N:0:O:0	0,61,3,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	228	20	20	0.02127659574468085	0.0	A:1:C:1:G:0:T:45:N:0:O:0	A:0:C:0:G:0:T:228:N:0:O:0	1,44,0,3	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	155	20	20	0.03333333333333333	0.0	A:2:C:0:G:57:T:1:N:0:O:0	A:0:C:0:G:155:T:0:N:0:O:0	2,9,0,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	155	20	20	0.025974025974025976	0.0	A:0:C:70:G:0:T:2:N:0:O:5	A:0:C:155:G:0:T:0:N:0:O:0	2,23,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10098	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	155	20	20	0.02608695652173913	0.0	A:0:C:0:G:111:T:3:N:0:O:1	A:0:C:0:G:155:T:0:N:0:O:0	3,49,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10130	A	T	A	16	ignore low frequency variant	Pass	False	False	True	198	302	20	20	0.020202020202020204	0.0	A:191:C:0:G:0:T:4:N:0:O:3	A:302:C:0:G:0:T:0:N:0:O:0	4,113,0,85	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	151	20	20	0.06666666666666667	0.0	A:6:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:151:T:0:N:0:O:0	6,28,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	151	20	20	0.019417475728155338	0.0	A:1:C:2:G:0:T:93:N:0:O:7	A:0:C:0:G:0:T:151:N:0:O:0	2,49,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10523	G	C	C	17	accept high frequency variant	Pass	False	True	True	91	267	20	20	1.0	1.0	A:0:C:91:G:0:T:0:N:0:O:0	A:0:C:267:G:0:T:0:N:0:O:0	63,63,28,28	206.227	935.0	yes	.	.	.	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	176	20	20	0.02531645569620253	0.0	A:0:C:2:G:0:T:75:N:0:O:2	A:0:C:0:G:0:T:176:N:0:O:0	0,59,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	176	20	20	0.030927835051546393	0.0	A:0:C:94:G:0:T:3:N:0:O:0	A:0:C:176:G:0:T:0:N:0:O:0	0,62,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	176	20	20	0.02564102564102564	0.0	A:2:C:0:G:73:T:0:N:0:O:3	A:0:C:0:G:175:T:1:N:0:O:0	2,13,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	176	20	20	0.03669724770642202	0.011363636363636364	A:4:C:96:G:0:T:0:N:0:O:9	A:2:C:174:G:0:T:0:N:0:O:0	3,57,1,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	11074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	181	20	20	0.014705882352941176	0.0	A:0:C:70:G:0:T:2:N:0:O:64	A:1:C:169:G:0:T:0:N:0:O:11	1,121,1,15	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	11079	T	G	T	16	ignore low frequency variant	Pass	False	False	True	31	161	20	20	0.03225806451612903	0.0	A:0:C:0:G:1:T:30:N:0:O:0	A:0:C:0:G:0:T:161:N:0:O:0	1,10,0,21	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	32	161	20	20	0.03125	0.0	A:0:C:0:G:1:T:31:N:0:O:0	A:0:C:0:G:0:T:161:N:0:O:0	1,10,0,22	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	180	203	20	20	0.016666666666666666	0.0	A:0:C:0:G:143:T:3:N:0:O:34	A:0:C:0:G:203:T:0:N:0:O:0	3,97,0,83	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	203	20	20	0.026785714285714284	0.0	A:0:C:0:G:3:T:109:N:0:O:0	A:0:C:0:G:0:T:203:N:0:O:0	3,48,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	11383	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	59	20	20	0.024096385542168676	0.0	A:2:C:0:G:81:T:0:N:0:O:0	A:0:C:0:G:59:T:0:N:0:O:0	1,46,1,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	89	20	20	0.02727272727272727	0.0	A:107:C:0:G:0:T:3:N:0:O:0	A:89:C:0:G:0:T:0:N:0:O:0	3,47,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	11996	A	T	A	16	ignore low frequency variant	Pass	False	False	True	39	187	20	20	0.02564102564102564	0.0	A:38:C:0:G:0:T:1:N:0:O:0	A:187:C:0:G:0:T:0:N:0:O:0	0,28,1,11	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12119	C	T	T	13	new position validated by illumina	Pass	True	True	True	40	187	20	20	1.0	1.0	A:0:C:0:G:0:T:40:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	29,29,11,11	136.227	485.6	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12129	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	188	20	20	0.02	0.0	A:0:C:48:G:0:T:1:N:0:O:1	A:0:C:188:G:0:T:0:N:0:O:0	0,33,1,17	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	189	20	20	0.06382978723404255	0.005291005291005291	A:0:C:36:G:0:T:3:N:0:O:8	A:0:C:187:G:0:T:1:N:0:O:1	0,39,3,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	184	20	20	0.05555555555555555	0.0	A:5:C:0:G:67:T:0:N:0:O:18	A:0:C:0:G:184:T:0:N:0:O:0	0,66,5,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	184	20	20	0.043010752688172046	0.0	A:4:C:0:G:88:T:0:N:0:O:1	A:0:C:0:G:184:T:0:N:0:O:0	4,28,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12453	C	T	C	16	ignore low frequency variant	Pass	False	False	True	176	341	20	20	0.022727272727272728	0.0	A:0:C:171:G:0:T:4:N:0:O:1	A:0:C:341:G:0:T:0:N:0:O:0	0,119,4,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	162	20	20	0.02	0.0	A:2:C:0:G:98:T:0:N:0:O:0	A:0:C:0:G:162:T:0:N:0:O:0	2,42,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	162	20	20	0.06896551724137931	0.0	A:0:C:79:G:0:T:6:N:0:O:2	A:0:C:162:G:0:T:0:N:0:O:0	0,64,6,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	117	20	20	0.023255813953488372	0.0	A:0:C:81:G:0:T:2:N:0:O:3	A:0:C:117:G:0:T:0:N:0:O:0	1,31,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	117	20	20	0.027777777777777776	0.0	A:101:C:0:G:3:T:0:N:0:O:4	A:116:C:0:G:0:T:1:N:0:O:0	3,33,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	117	20	20	0.02197802197802198	0.0	A:2:C:1:G:85:T:0:N:0:O:3	A:0:C:0:G:117:T:0:N:0:O:0	2,22,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	151	20	20	0.024	0.0	A:3:C:0:G:122:T:0:N:0:O:0	A:0:C:0:G:151:T:0:N:0:O:0	3,65,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13117	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	151	20	20	0.03597122302158273	0.0	A:133:C:0:G:5:T:0:N:0:O:1	A:151:C:0:G:0:T:0:N:0:O:0	5,68,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13405	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	48	20	20	0.027777777777777776	0.0	A:0:C:105:G:0:T:3:N:0:O:0	A:0:C:48:G:0:T:0:N:0:O:0	0,67,3,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13414	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	51	20	20	0.028846153846153848	0.0	A:0:C:0:G:3:T:101:N:0:O:0	A:0:C:0:G:0:T:51:N:0:O:0	0,65,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13422	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	55	20	20	0.018867924528301886	0.0	A:0:C:2:G:0:T:94:N:0:O:10	A:0:C:0:G:0:T:55:N:0:O:0	1,73,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	63	20	20	0.030303030303030304	0.0	A:0:C:93:G:0:T:3:N:0:O:3	A:0:C:63:G:0:T:0:N:0:O:0	1,61,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	64	20	20	0.12	0.0	A:1:C:64:G:0:T:9:N:0:O:1	A:0:C:64:G:0:T:0:N:0:O:0	0,62,9,13	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	64	20	20	0.06	0.0	A:6:C:0:G:85:T:0:N:0:O:9	A:0:C:0:G:64:T:0:N:0:O:0	6,34,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13522	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	64	20	20	0.03296703296703297	0.0	A:88:C:0:G:3:T:0:N:0:O:0	A:64:C:0:G:0:T:0:N:0:O:0	3,24,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	98	49	20	20	0.02040816326530612	0.0	A:2:C:92:G:0:T:0:N:0:O:4	A:0:C:49:G:0:T:0:N:0:O:0	2,42,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	176	20	20	0.03333333333333333	0.0	A:3:C:0:G:87:T:0:N:0:O:0	A:0:C:0:G:175:T:1:N:0:O:0	3,36,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13870	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	176	20	20	0.02702702702702703	0.0	A:2:C:0:G:70:T:0:N:0:O:2	A:0:C:0:G:176:T:0:N:0:O:0	2,9,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	176	20	20	0.027777777777777776	0.0	A:31:C:0:G:1:T:0:N:0:O:4	A:176:C:0:G:0:T:0:N:0:O:0	0,5,1,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	197	20	20	0.02247191011235955	0.0	A:0:C:83:G:0:T:2:N:0:O:4	A:0:C:196:G:0:T:0:N:0:O:1	1,75,1,14	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14293	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	196	20	20	0.0234375	0.0	A:0:C:125:G:0:T:3:N:0:O:0	A:0:C:196:G:0:T:0:N:0:O:0	0,68,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	196	20	20	0.039603960396039604	0.0	A:4:C:0:G:95:T:0:N:0:O:2	A:0:C:0:G:196:T:0:N:0:O:0	4,39,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	90	195	20	20	0.9555555555555556	0.9948717948717949	A:0:C:2:G:0:T:86:N:0:O:2	A:0:C:0:G:0:T:194:N:0:O:1	51,53,35,37	408.445	1368.1	yes	.	.	.	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	14409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	195	20	20	0.020833333333333332	0.0	A:0:C:2:G:0:T:93:N:0:O:1	A:0:C:0:G:0:T:194:N:0:O:1	2,56,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14554	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	195	20	20	0.02702702702702703	0.0	A:0:C:106:G:0:T:3:N:0:O:2	A:0:C:195:G:0:T:0:N:0:O:0	0,51,3,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	184	20	20	0.030927835051546393	0.0	A:0:C:93:G:0:T:3:N:0:O:1	A:0:C:184:G:0:T:0:N:0:O:0	0,68,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	185	20	20	0.021052631578947368	0.0	A:0:C:87:G:0:T:2:N:0:O:6	A:0:C:184:G:0:T:0:N:0:O:1	0,70,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	65	20	20	0.03636363636363636	0.0	A:0:C:4:G:0:T:105:N:0:O:1	A:0:C:0:G:0:T:65:N:0:O:0	0,71,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	72	20	20	0.02727272727272727	0.0	A:0:C:98:G:0:T:3:N:0:O:9	A:0:C:72:G:0:T:0:N:0:O:0	0,64,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	78	20	20	0.06796116504854369	0.0	A:7:C:0:G:93:T:0:N:0:O:3	A:0:C:0:G:78:T:0:N:0:O:0	7,36,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	74	20	20	0.0625	0.0	A:0:C:5:G:0:T:73:N:0:O:2	A:0:C:0:G:0:T:74:N:0:O:0	0,71,5,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	191	20	20	0.023255813953488372	0.0	A:2:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:190:T:1:N:0:O:0	2,36,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	191	20	20	0.020202020202020204	0.0	A:0:C:96:G:0:T:2:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,67,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	15711	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	187	20	20	0.019867549668874173	0.0	A:137:C:0:G:3:T:0:N:0:O:11	A:187:C:0:G:0:T:0:N:0:O:0	3,69,0,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	185	20	20	0.01694915254237288	0.0	A:0:C:1:G:0:T:41:N:0:O:17	A:0:C:0:G:1:T:184:N:0:O:0	0,30,1,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	185	20	20	0.125	0.0	A:0:C:34:G:0:T:5:N:0:O:1	A:0:C:185:G:0:T:0:N:0:O:0	1,16,4,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	185	20	20	0.0392156862745098	0.0	A:0:C:96:G:0:T:4:N:0:O:2	A:0:C:185:G:0:T:0:N:0:O:0	0,62,4,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	36	20	20	0.022988505747126436	0.0	A:0:C:84:G:0:T:2:N:0:O:1	A:0:C:36:G:0:T:0:N:0:O:0	0,55,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	15	20	20	0.02197802197802198	0.0	A:2:C:0:G:87:T:0:N:0:O:2	A:0:C:0:G:15:T:0:N:0:O:0	2,20,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	16999	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	210	20	20	0.029411764705882353	0.0	A:99:C:0:G:3:T:0:N:0:O:0	A:210:C:0:G:0:T:0:N:0:O:0	3,31,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	357	20	20	0.027777777777777776	0.0	A:5:C:0:G:166:T:0:N:0:O:9	A:0:C:0:G:356:T:1:N:0:O:0	5,45,0,135	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	161	20	20	0.03409090909090909	0.0	A:3:C:1:G:0:T:83:N:0:O:1	A:0:C:0:G:0:T:161:N:0:O:0	3,17,0,71	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	163	20	20	0.022727272727272728	0.0	A:0:C:86:G:0:T:2:N:0:O:0	A:0:C:163:G:0:T:0:N:0:O:0	0,40,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17704	A	G	A	16	ignore low frequency variant	Pass	False	False	True	197	330	20	20	0.025380710659898477	0.0	A:188:C:0:G:5:T:0:N:0:O:4	A:330:C:0:G:0:T:0:N:0:O:0	5,71,0,126	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17705	G	A	G	16	ignore low frequency variant	Pass	False	False	True	190	330	20	20	0.02631578947368421	0.0	A:5:C:0:G:182:T:0:N:0:O:3	A:0:C:0:G:330:T:0:N:0:O:0	5,82,0,108	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	172	20	20	0.06153846153846154	0.0	A:0:C:61:G:0:T:4:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	0,40,4,25	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	172	20	20	0.022727272727272728	0.005813953488372093	A:77:C:0:G:0:T:2:N:0:O:9	A:171:C:0:G:0:T:1:N:0:O:0	0,40,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	172	20	20	0.0594059405940594	0.0	A:6:C:0:G:95:T:0:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	0,65,6,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	18086	C	A	A	13	new position validated by illumina	Pass	False	True	True	140	253	20	20	0.9785714285714285	1.0	A:137:C:1:G:1:T:0:N:0:O:1	A:253:C:0:G:0:T:0:N:0:O:0	64,65,73,75	209.237	1643.9	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	5	20	20	0.11940298507462686	0.0	A:0:C:58:G:0:T:8:N:0:O:1	A:0:C:5:G:0:T:0:N:0:O:0	1,52,7,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	122	20	20	0.05154639175257732	0.00819672131147541	A:0:C:5:G:0:T:89:N:0:O:3	A:0:C:1:G:0:T:121:N:0:O:0	0,64,5,33	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	223	20	20	0.04	0.0	A:0:C:2:G:0:T:48:N:0:O:0	A:0:C:0:G:0:T:223:N:0:O:0	2,29,0,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	20011	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	229	20	20	0.030927835051546393	0.0	A:3:C:0:G:93:T:0:N:0:O:1	A:0:C:0:G:229:T:0:N:0:O:0	3,55,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	229	20	20	0.05154639175257732	0.0	A:0:C:89:G:1:T:5:N:0:O:2	A:1:C:228:G:0:T:0:N:0:O:0	0,51,5,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	20409	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	53	20	20	0.02197802197802198	0.0	A:0:C:1:G:2:T:85:N:0:O:3	A:0:C:0:G:0:T:53:N:0:O:0	0,63,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	20495	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	29	20	20	0.020618556701030927	0.0	A:0:C:0:G:94:T:2:N:0:O:1	A:0:C:0:G:29:T:0:N:0:O:0	0,59,2,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	20653	T	G	T	16	ignore low frequency variant	Pass	False	False	True	140	238	20	20	0.02142857142857143	0.0	A:0:C:0:G:3:T:137:N:0:O:0	A:0:C:0:G:0:T:238:N:0:O:0	3,49,0,91	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	193	20	20	0.05434782608695652	0.0	A:85:C:0:G:5:T:0:N:0:O:2	A:193:C:0:G:0:T:0:N:0:O:0	5,23,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	20890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	193	20	20	0.022900763358778626	0.0	A:3:C:0:G:122:T:0:N:0:O:6	A:0:C:0:G:193:T:0:N:0:O:0	3,58,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	196	20	20	0.02912621359223301	0.0	A:3:C:0:G:100:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	3,36,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	196	20	20	0.031746031746031744	0.0	A:61:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	0,2,2,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	196	20	20	0.02127659574468085	0.01020408163265306	A:2:C:0:G:82:T:0:N:0:O:10	A:2:C:0:G:193:T:1:N:0:O:0	0,14,2,80	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	55	195	20	20	0.05454545454545454	0.0	A:0:C:0:G:3:T:52:N:0:O:0	A:0:C:0:G:0:T:195:N:0:O:0	2,9,1,46	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	17	20	20	0.05714285714285714	0.0	A:0:C:0:G:91:T:6:N:0:O:8	A:0:C:0:G:17:T:0:N:0:O:0	0,72,6,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	24	20	20	0.019801980198019802	0.0	A:0:C:0:G:95:T:2:N:0:O:4	A:0:C:0:G:24:T:0:N:0:O:0	0,66,2,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	25	20	20	0.024096385542168676	0.0	A:0:C:81:G:0:T:2:N:0:O:0	A:0:C:25:G:0:T:0:N:0:O:0	0,55,2,28	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	17	20	20	0.024691358024691357	0.0	A:0:C:79:G:0:T:2:N:0:O:0	A:1:C:16:G:0:T:0:N:0:O:0	0,60,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	36	20	20	0.022988505747126436	0.0	A:85:C:0:G:0:T:2:N:0:O:0	A:36:C:0:G:0:T:0:N:0:O:0	0,32,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	36	20	20	0.0625	0.0	A:5:C:0:G:71:T:0:N:0:O:4	A:0:C:0:G:36:T:0:N:0:O:0	5,14,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	42	20	20	0.025	0.0	A:115:C:0:G:0:T:3:N:0:O:2	A:42:C:0:G:0:T:0:N:0:O:0	3,51,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21740	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	181	20	20	0.022388059701492536	0.0	A:0:C:3:G:0:T:121:N:0:O:10	A:0:C:0:G:0:T:181:N:0:O:0	1,85,2,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21761	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	181	20	20	0.022727272727272728	0.0	A:3:C:0:G:128:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	3,63,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	181	20	20	0.037037037037037035	0.0	A:5:C:0:G:123:T:0:N:0:O:7	A:0:C:0:G:181:T:0:N:0:O:0	5,66,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	22165	T	A	T	16	ignore low frequency variant	Pass	False	False	True	222	175	20	20	0.018018018018018018	0.0	A:4:C:0:G:0:T:192:N:0:O:26	A:0:C:0:G:0:T:175:N:0:O:0	2,105,2,117	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	145	177	20	20	0.041379310344827586	0.0	A:0:C:0:G:6:T:139:N:0:O:0	A:0:C:0:G:0:T:177:N:0:O:0	6,46,0,99	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	82	20	20	0.029411764705882353	0.0	A:33:C:0:G:1:T:0:N:0:O:0	A:82:C:0:G:0:T:0:N:0:O:0	0,7,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	169	20	20	0.026455026455026454	0.0	A:0:C:157:G:0:T:5:N:0:O:27	A:0:C:169:G:0:T:0:N:0:O:0	0,155,5,34	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	257	169	20	20	0.023346303501945526	0.0	A:0:C:6:G:0:T:251:N:0:O:0	A:0:C:0:G:0:T:169:N:0:O:0	0,147,6,110	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23348	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	158	20	20	0.030927835051546393	0.0	A:90:C:0:G:3:T:0:N:0:O:4	A:158:C:0:G:0:T:0:N:0:O:0	3,28,0,69	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	135	158	20	20	0.8962962962962963	1.0	A:0:C:0:G:121:T:0:N:0:O:14	A:0:C:0:G:158:T:0:N:0:O:0	64,78,57,57	69.237	1537.3	yes	.	.	.	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	178	20	20	0.021052631578947368	0.0	A:2:C:0:G:89:T:0:N:0:O:4	A:0:C:0:G:177:T:0:N:0:O:1	2,22,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23614	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	183	20	20	0.022556390977443608	0.0	A:130:C:0:G:3:T:0:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	3,65,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	183	20	20	0.02702702702702703	0.0	A:106:C:0:G:3:T:0:N:0:O:2	A:183:C:0:G:0:T:0:N:0:O:0	3,54,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	145	20	20	0.102803738317757	0.0	A:0:C:95:G:0:T:11:N:0:O:1	A:0:C:145:G:0:T:0:N:0:O:0	0,87,11,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	145	20	20	0.020833333333333332	0.0	A:2:C:0:G:0:T:94:N:0:O:0	A:0:C:0:G:0:T:145:N:0:O:0	2,32,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	145	20	20	0.0196078431372549	0.0	A:2:C:0:G:98:T:0:N:0:O:2	A:0:C:0:G:145:T:0:N:0:O:0	2,28,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24237	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	162	20	20	0.024096385542168676	0.0	A:0:C:81:G:0:T:2:N:0:O:0	A:1:C:161:G:0:T:0:N:0:O:0	1,47,1,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	162	20	20	0.04597701149425287	0.0	A:4:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:160:T:2:N:0:O:0	4,21,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	162	20	20	0.024096385542168676	0.0	A:2:C:0:G:78:T:0:N:0:O:3	A:0:C:0:G:162:T:0:N:0:O:0	2,17,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	162	20	20	0.021505376344086023	0.0	A:2:C:0:G:88:T:0:N:0:O:3	A:0:C:0:G:162:T:0:N:0:O:0	2,30,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	162	20	20	0.03260869565217391	0.0	A:3:C:0:G:85:T:0:N:0:O:4	A:0:C:0:G:161:T:1:N:0:O:0	0,53,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	184	20	20	0.03875968992248062	0.005434782608695652	A:0:C:119:G:0:T:5:N:0:O:5	A:0:C:183:G:0:T:1:N:0:O:0	0,65,5,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24603	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	184	20	20	0.020833333333333332	0.0	A:3:C:0:G:141:T:0:N:0:O:0	A:0:C:0:G:184:T:0:N:0:O:0	3,42,0,102	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	184	20	20	0.03125	0.0	A:92:C:3:G:0:T:1:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	3,50,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	184	20	20	0.02	0.0	A:49:C:0:G:1:T:0:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	1,2,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	211	20	20	0.025423728813559324	0.0	A:0:C:0:G:115:T:3:N:0:O:0	A:0:C:0:G:211:T:0:N:0:O:0	3,49,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24954	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	211	20	20	0.02247191011235955	0.0	A:2:C:0:G:85:T:0:N:0:O:2	A:0:C:0:G:210:T:1:N:0:O:0	1,49,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	37	210	20	20	0.05405405405405406	0.0	A:0:C:2:G:0:T:33:N:0:O:2	A:0:C:0:G:0:T:210:N:0:O:0	2,32,0,5	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	150	20	20	0.020202020202020204	0.0	A:0:C:0:G:2:T:96:N:0:O:1	A:0:C:0:G:0:T:150:N:0:O:0	2,43,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	101	150	20	20	0.9900990099009901	1.0	A:0:C:0:G:1:T:100:N:0:O:0	A:0:C:0:G:0:T:150:N:0:O:0	39,39,61,62	420.0	1716.1	yes	.	.	.	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	150	20	20	0.037383177570093455	0.0	A:4:C:95:G:0:T:0:N:0:O:8	A:0:C:150:G:0:T:0:N:0:O:0	4,55,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	187	20	20	0.027777777777777776	0.0	A:0:C:3:G:0:T:104:N:0:O:1	A:0:C:0:G:0:T:187:N:0:O:0	0,58,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	187	20	20	0.020618556701030927	0.0	A:0:C:95:G:0:T:2:N:0:O:0	A:2:C:185:G:0:T:0:N:0:O:0	0,56,2,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	187	20	20	0.08888888888888889	0.0	A:39:C:4:G:0:T:0:N:0:O:2	A:187:C:0:G:0:T:0:N:0:O:0	0,27,4,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	187	20	20	0.021505376344086023	0.0	A:0:C:91:G:0:T:2:N:0:O:0	A:1:C:186:G:0:T:0:N:0:O:0	1,48,1,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	187	20	20	0.041666666666666664	0.0	A:0:C:91:G:0:T:4:N:0:O:1	A:0:C:187:G:0:T:0:N:0:O:0	0,59,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25840	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	187	20	20	0.028037383177570093	0.0	A:0:C:104:G:0:T:3:N:0:O:0	A:0:C:187:G:0:T:0:N:0:O:0	0,62,3,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	77	187	20	20	0.025974025974025976	0.0	A:73:C:0:G:0:T:2:N:0:O:2	A:187:C:0:G:0:T:0:N:0:O:0	0,52,2,25	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	187	20	20	0.02040816326530612	0.0	A:2:C:0:G:0:T:96:N:0:O:0	A:0:C:0:G:0:T:187:N:0:O:0	2,39,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	187	20	20	0.033707865168539325	0.0	A:0:C:83:G:0:T:3:N:0:O:3	A:0:C:187:G:0:T:0:N:0:O:0	1,47,2,42	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00064	artic-pipeline	NB09	MN908947.3	25994	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	194	20	20	0.025	0.0	A:0:C:3:G:0:T:117:N:0:O:0	A:1:C:0:G:0:T:193:N:0:O:0	0,70,3,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	140	345	20	20	0.02142857142857143	0.005797101449275362	A:3:C:122:G:0:T:0:N:0:O:15	A:2:C:343:G:0:T:0:N:0:O:0	3,65,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26219	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	190	20	20	0.0273972602739726	0.0	A:71:C:0:G:0:T:2:N:0:O:0	A:190:C:0:G:0:T:0:N:0:O:0	1,40,1,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	188	359	20	20	0.026595744680851064	0.002785515320334262	A:0:C:176:G:0:T:5:N:0:O:7	A:0:C:358:G:0:T:1:N:0:O:0	1,125,4,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	185	20	20	0.034482758620689655	0.0	A:0:C:84:G:0:T:3:N:0:O:0	A:0:C:185:G:0:T:0:N:0:O:0	0,59,3,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	185	20	20	0.023255813953488372	0.0	A:2:C:0:G:84:T:0:N:0:O:0	A:0:C:0:G:184:T:1:N:0:O:0	2,22,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	162	349	20	20	0.08024691358024691	0.0	A:0:C:149:G:0:T:13:N:0:O:0	A:0:C:349:G:0:T:0:N:0:O:0	0,132,13,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	191	349	20	20	0.05235602094240838	0.0	A:0:C:10:G:0:T:181:N:0:O:0	A:0:C:0:G:0:T:349:N:0:O:0	0,140,10,51	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	172	20	20	0.047619047619047616	0.0	A:4:C:0:G:80:T:0:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	4,10,0,74	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	172	20	20	0.06976744186046512	0.0	A:1:C:78:G:0:T:6:N:0:O:1	A:0:C:172:G:0:T:0:N:0:O:0	0,62,6,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	177	20	20	0.020833333333333332	0.0	A:0:C:92:G:1:T:2:N:0:O:1	A:0:C:177:G:0:T:0:N:0:O:0	0,57,2,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	177	20	20	0.0379746835443038	0.0	A:3:C:0:G:75:T:0:N:0:O:1	A:0:C:0:G:177:T:0:N:0:O:0	3,17,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	177	20	20	0.06666666666666667	0.0	A:0:C:70:G:0:T:5:N:0:O:0	A:0:C:177:G:0:T:0:N:0:O:0	0,59,5,16	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	167	20	20	0.033707865168539325	0.0	A:3:C:0:G:86:T:0:N:0:O:0	A:0:C:0:G:166:T:1:N:0:O:0	3,27,0,62	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	67	20	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:0:N:0:O:1	A:67:C:0:G:0:T:0:N:0:O:0	2,32,0,62	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	90	67	20	20	0.044444444444444446	0.0	A:4:C:83:G:0:T:0:N:0:O:3	A:0:C:66:G:0:T:1:N:0:O:0	4,40,0,50	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	143	67	20	20	0.027972027972027972	0.0	A:118:C:0:G:0:T:4:N:0:O:21	A:67:C:0:G:0:T:0:N:0:O:0	4,77,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	170	20	20	0.04310344827586207	0.0	A:5:C:0:G:110:T:0:N:0:O:1	A:0:C:0:G:168:T:2:N:0:O:0	5,49,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	170	20	20	0.04310344827586207	0.0	A:111:C:0:G:5:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	5,48,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	28088	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	170	20	20	0.021739130434782608	0.0	A:0:C:2:G:0:T:89:N:0:O:1	A:0:C:0:G:0:T:170:N:0:O:0	1,37,1,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	167	20	20	0.025	0.0	A:2:C:0:G:78:T:0:N:0:O:0	A:0:C:0:G:167:T:0:N:0:O:0	2,30,0,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	166	20	20	0.029850746268656716	0.0	A:0:C:65:G:0:T:2:N:0:O:0	A:0:C:166:G:0:T:0:N:0:O:0	0,50,2,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	167	20	20	0.021505376344086023	0.0	A:2:C:82:G:0:T:0:N:0:O:9	A:0:C:167:G:0:T:0:N:0:O:0	2,63,0,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	172	20	20	0.02631578947368421	0.0	A:0:C:73:G:0:T:2:N:0:O:1	A:0:C:172:G:0:T:0:N:0:O:0	1,34,1,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	168	20	20	0.08653846153846154	0.0	A:9:C:0:G:93:T:0:N:0:O:2	A:0:C:0:G:168:T:0:N:0:O:0	9,15,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	168	20	20	0.03225806451612903	0.0	A:0:C:80:G:0:T:3:N:0:O:10	A:0:C:168:G:0:T:0:N:0:O:0	0,45,3,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	310	20	20	0.028169014084507043	0.0	A:0:C:137:G:0:T:4:N:0:O:1	A:1:C:309:G:0:T:0:N:0:O:0	0,123,4,19	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29055	A	C	A	16	ignore low frequency variant	Pass	False	False	True	35	182	20	20	0.02857142857142857	0.0	A:34:C:1:G:0:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	1,8,0,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	60	182	20	20	0.03333333333333333	0.0	A:2:C:0:G:56:T:0:N:0:O:2	A:0:C:0:G:182:T:0:N:0:O:0	2,5,0,55	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29101	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	182	20	20	0.028037383177570093	0.0	A:103:C:0:G:3:T:0:N:0:O:1	A:182:C:0:G:0:T:0:N:0:O:0	3,47,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29118	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	182	20	20	0.03	0.0	A:3:C:97:G:0:T:0:N:0:O:0	A:0:C:182:G:0:T:0:N:0:O:0	0,39,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29119	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	182	20	20	0.02127659574468085	0.0	A:2:C:92:G:0:T:0:N:0:O:0	A:0:C:182:G:0:T:0:N:0:O:0	2,45,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	86	182	20	20	0.03488372093023256	0.0	A:3:C:78:G:0:T:1:N:0:O:4	A:0:C:182:G:0:T:0:N:0:O:0	3,47,0,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29122	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	182	20	20	0.022222222222222223	0.0	A:82:C:0:G:2:T:0:N:0:O:6	A:182:C:0:G:0:T:0:N:0:O:0	1,44,1,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	182	20	20	0.0449438202247191	0.0	A:0:C:4:G:0:T:84:N:0:O:1	A:0:C:0:G:0:T:182:N:0:O:0	0,52,4,37	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29271	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	182	20	20	0.02197802197802198	0.0	A:89:C:2:G:0:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	0,47,2,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	182	20	20	0.019801980198019802	0.0	A:2:C:96:G:0:T:0:N:0:O:3	A:0:C:182:G:0:T:0:N:0:O:0	2,41,0,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	46	20	20	0.036036036036036036	0.0	A:4:C:0:G:106:T:0:N:0:O:1	A:0:C:0:G:46:T:0:N:0:O:0	4,19,0,92	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00064	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	148	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	176	20	20	0.03225806451612903	0.0	A:60:C:0:G:0:T:2:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	0,5,2,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	176	20	20	0.046511627906976744	0.0	A:0:C:41:G:0:T:2:N:0:O:0	A:0:C:176:G:0:T:0:N:0:O:0	0,7,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	141	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	178	20	20	0.0625	0.0	A:0:C:3:G:0:T:44:N:0:O:1	A:0:C:0:G:0:T:178:N:0:O:0	0,9,3,39	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	171	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	182	20	20	0.02127659574468085	0.0	A:0:C:45:G:0:T:1:N:0:O:1	A:0:C:182:G:0:T:0:N:0:O:0	0,6,1,41	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	182	20	20	0.029411764705882353	0.005494505494505495	A:0:C:1:G:0:T:31:N:0:O:2	A:0:C:1:G:0:T:181:N:0:O:0	0,7,1,27	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	184	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	183	20	20	0.022727272727272728	0.0	A:0:C:1:G:0:T:41:N:0:O:2	A:0:C:0:G:0:T:183:N:0:O:0	0,6,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	177	20	20	0.02040816326530612	0.0	A:1:C:0:G:48:T:0:N:0:O:0	A:0:C:0:G:177:T:0:N:0:O:0	1,1,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	316	T	G	T	16	ignore low frequency variant	Pass	False	False	True	46	176	20	20	0.021739130434782608	0.0	A:0:C:0:G:1:T:45:N:0:O:0	A:0:C:0:G:0:T:176:N:0:O:0	1,10,0,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	231	20	20	0.029411764705882353	0.0	A:98:C:0:G:3:T:0:N:0:O:1	A:231:C:0:G:0:T:0:N:0:O:0	3,22,0,80	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	234	20	20	0.02666666666666667	0.0	A:0:C:2:G:0:T:68:N:0:O:5	A:0:C:0:G:0:T:234:N:0:O:0	2,17,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	83	256	20	20	0.9759036144578314	1.0	A:81:C:0:G:0:T:0:N:0:O:2	A:256:C:0:G:0:T:0:N:0:O:0	21,23,60,60	209.237	2590.3	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	251	20	20	0.0234375	0.0	A:125:C:0:G:3:T:0:N:0:O:0	A:251:C:0:G:0:T:0:N:0:O:0	3,39,0,89	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	835	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	179	20	20	0.021052631578947368	0.0	A:0:C:91:G:2:T:0:N:0:O:2	A:0:C:179:G:0:T:0:N:0:O:0	0,66,2,29	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	179	20	20	0.04040404040404041	0.0	A:0:C:94:G:1:T:4:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	0,54,4,45	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	179	20	20	0.043010752688172046	0.0	A:0:C:89:G:0:T:4:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	0,50,4,43	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	351	20	20	0.021897810218978103	0.0	A:134:C:0:G:0:T:3:N:0:O:0	A:351:C:0:G:0:T:0:N:0:O:0	3,66,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	152	351	20	20	0.03289473684210526	0.0	A:0:C:146:G:5:T:0:N:0:O:1	A:0:C:351:G:0:T:0:N:0:O:0	5,78,0,74	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	1632	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	193	20	20	0.0425531914893617	0.0	A:39:C:0:G:2:T:0:N:0:O:6	A:193:C:0:G:0:T:0:N:0:O:0	1,13,1,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	193	20	20	0.02857142857142857	0.0	A:0:C:3:G:0:T:99:N:0:O:3	A:0:C:0:G:0:T:193:N:0:O:0	0,56,3,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	193	20	20	0.020202020202020204	0.0	A:2:C:0:G:97:T:0:N:0:O:0	A:0:C:0:G:193:T:0:N:0:O:0	0,35,2,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	157	20	20	0.09	0.0	A:9:C:0:G:91:T:0:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	9,34,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	2225	A	G	A	16	ignore low frequency variant	Pass	False	False	True	236	333	20	20	0.0211864406779661	0.0	A:231:C:0:G:5:T:0:N:0:O:0	A:333:C:0:G:0:T:0:N:0:O:0	5,89,0,147	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	2352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	285	20	20	0.020202020202020204	0.0035087719298245615	A:2:C:0:G:97:T:0:N:0:O:0	A:1:C:0:G:284:T:0:N:0:O:0	2,45,0,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	120	285	20	20	0.03333333333333333	0.0	A:116:C:4:G:0:T:0:N:0:O:0	A:285:C:0:G:0:T:0:N:0:O:0	4,53,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	285	20	20	0.0273972602739726	0.0	A:2:C:0:G:69:T:0:N:0:O:2	A:0:C:0:G:285:T:0:N:0:O:0	0,22,2,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	189	20	20	0.023255813953488372	0.0	A:2:C:0:G:82:T:0:N:0:O:2	A:0:C:0:G:189:T:0:N:0:O:0	1,32,1,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	156	174	20	20	0.02564102564102564	0.0	A:0:C:4:G:0:T:150:N:0:O:2	A:0:C:0:G:0:T:174:N:0:O:0	0,96,4,60	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	174	20	20	0.022727272727272728	0.0	A:3:C:0:G:125:T:0:N:0:O:4	A:0:C:0:G:174:T:0:N:0:O:0	3,48,0,84	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	2903	A	C	A	16	ignore low frequency variant	Pass	False	False	True	108	184	20	20	0.027777777777777776	0.0	A:105:C:3:G:0:T:0:N:0:O:0	A:184:C:0:G:0:T:0:N:0:O:0	3,47,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	192	338	20	20	0.9479166666666666	1.0	A:0:C:1:G:0:T:182:N:0:O:9	A:0:C:0:G:0:T:338:N:0:O:0	85,94,97,98	263.922	725.3	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	175	20	20	0.029411764705882353	0.0	A:0:C:3:G:0:T:99:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,62,3,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	175	20	20	0.04040404040404041	0.005714285714285714	A:95:C:0:G:4:T:0:N:0:O:0	A:174:C:0:G:1:T:0:N:0:O:0	4,34,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	175	20	20	0.044444444444444446	0.0	A:0:C:84:G:0:T:4:N:0:O:2	A:0:C:175:G:0:T:0:N:0:O:0	0,51,4,39	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	175	20	20	0.02127659574468085	0.0	A:43:C:0:G:0:T:1:N:0:O:3	A:175:C:0:G:0:T:0:N:0:O:0	1,28,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	179	20	20	0.03773584905660377	0.0	A:0:C:102:G:0:T:4:N:0:O:0	A:0:C:179:G:0:T:0:N:0:O:0	0,83,4,23	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	132	20	20	0.056818181818181816	0.0	A:5:C:0:G:81:T:0:N:0:O:2	A:0:C:0:G:132:T:0:N:0:O:0	2,52,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3885	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	132	20	20	0.03225806451612903	0.0	A:0:C:87:G:0:T:3:N:0:O:3	A:0:C:132:G:0:T:0:N:0:O:0	3,35,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	124	132	20	20	0.03225806451612903	0.0	A:4:C:0:G:0:T:105:N:0:O:15	A:0:C:0:G:0:T:132:N:0:O:0	4,72,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	132	20	20	0.0379746835443038	0.0	A:0:C:74:G:0:T:3:N:0:O:2	A:0:C:132:G:0:T:0:N:0:O:0	0,69,3,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	4072	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	132	20	20	0.023255813953488372	0.0	A:0:C:2:G:0:T:83:N:0:O:1	A:0:C:0:G:0:T:132:N:0:O:0	0,55,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	235	258	20	20	0.029787234042553193	0.0	A:7:C:0:G:211:T:0:N:0:O:17	A:0:C:0:G:258:T:0:N:0:O:0	7,91,0,144	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	219	316	20	20	0.0319634703196347	0.0	A:0:C:0:G:201:T:7:N:0:O:11	A:1:C:0:G:315:T:0:N:0:O:0	0,166,7,53	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	190	20	20	0.0196078431372549	0.0	A:94:C:0:G:0:T:2:N:0:O:6	A:190:C:0:G:0:T:0:N:0:O:0	0,49,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	176	20	20	0.020202020202020204	0.0	A:0:C:92:G:0:T:2:N:0:O:5	A:1:C:175:G:0:T:0:N:0:O:0	0,69,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	176	20	20	0.026785714285714284	0.0	A:0:C:0:G:3:T:104:N:0:O:5	A:0:C:0:G:0:T:176:N:0:O:0	0,57,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	4941	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	175	20	20	0.022222222222222223	0.0	A:0:C:2:G:0:T:87:N:0:O:1	A:0:C:0:G:0:T:175:N:0:O:0	0,67,2,23	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	73	114	20	20	0.0273972602739726	0.0	A:71:C:2:G:0:T:0:N:0:O:0	A:114:C:0:G:0:T:0:N:0:O:0	0,37,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	220	317	20	20	0.02727272727272727	0.0	A:0:C:209:G:0:T:6:N:0:O:5	A:1:C:316:G:0:T:0:N:0:O:0	0,134,6,86	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5621	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	191	20	20	0.02197802197802198	0.0	A:0:C:87:G:0:T:2:N:0:O:2	A:0:C:191:G:0:T:0:N:0:O:0	1,27,1,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	191	20	20	0.11594202898550725	0.0	A:0:C:60:G:0:T:8:N:0:O:1	A:0:C:191:G:0:T:0:N:0:O:0	0,59,8,10	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5739	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	191	20	20	0.04	0.0	A:4:C:0:G:95:T:0:N:0:O:1	A:0:C:0:G:191:T:0:N:0:O:0	4,42,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5741	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	191	20	20	0.02830188679245283	0.0	A:0:C:0:G:103:T:3:N:0:O:0	A:0:C:0:G:191:T:0:N:0:O:0	3,37,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	191	20	20	0.02702702702702703	0.0	A:0:C:2:G:0:T:72:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	0,53,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	191	20	20	0.02197802197802198	0.0	A:0:C:2:G:0:T:89:N:0:O:0	A:0:C:0:G:0:T:191:N:0:O:0	2,45,0,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	172	20	20	0.9772727272727273	1.0	A:0:C:0:G:1:T:129:N:0:O:2	A:0:C:0:G:0:T:172:N:0:O:0	65,67,64,65	70.0	1078.2	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	172	20	20	0.1566265060240964	0.0	A:0:C:68:G:0:T:13:N:0:O:2	A:0:C:172:G:0:T:0:N:0:O:0	0,59,13,24	.	.	no	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	172	20	20	0.02197802197802198	0.005813953488372093	A:2:C:0:G:88:T:0:N:0:O:1	A:1:C:0:G:171:T:0:N:0:O:0	2,24,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	172	20	20	0.02127659574468085	0.0	A:91:C:0:G:2:T:0:N:0:O:1	A:172:C:0:G:0:T:0:N:0:O:0	2,23,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	172	20	20	0.017094017094017096	0.0	A:0:C:2:G:0:T:96:N:0:O:19	A:0:C:0:G:0:T:172:N:0:O:0	1,50,1,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	161	20	20	0.029411764705882353	0.012422360248447204	A:0:C:95:G:0:T:3:N:0:O:4	A:0:C:159:G:0:T:2:N:0:O:0	0,70,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	161	20	20	0.024691358024691357	0.0	A:2:C:0:G:73:T:0:N:0:O:6	A:0:C:0:G:161:T:0:N:0:O:0	2,43,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	6289	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	163	20	20	0.02912621359223301	0.0	A:3:C:0:G:99:T:0:N:0:O:1	A:0:C:0:G:163:T:0:N:0:O:0	3,48,0,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6290	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	163	20	20	0.023622047244094488	0.0	A:3:C:0:G:1:T:122:N:0:O:1	A:0:C:0:G:0:T:163:N:0:O:0	3,68,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6291	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	163	20	20	0.024793388429752067	0.0	A:0:C:0:G:117:T:3:N:0:O:1	A:0:C:0:G:163:T:0:N:0:O:0	3,65,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	164	20	20	0.024691358024691357	0.0	A:2:C:0:G:78:T:0:N:0:O:1	A:0:C:0:G:164:T:0:N:0:O:0	2,15,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6317	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	164	20	20	0.027522935779816515	0.0	A:3:C:104:G:0:T:1:N:0:O:1	A:0:C:164:G:0:T:0:N:0:O:0	0,66,3,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	164	20	20	0.02912621359223301	0.0	A:0:C:0:G:3:T:98:N:0:O:2	A:0:C:0:G:0:T:164:N:0:O:0	0,68,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	77	20	20	0.028169014084507043	0.0	A:0:C:68:G:0:T:2:N:0:O:1	A:0:C:77:G:0:T:0:N:0:O:0	2,37,0,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	77	20	20	0.0196078431372549	0.0	A:1:C:0:G:2:T:96:N:0:O:3	A:0:C:0:G:0:T:77:N:0:O:0	1,62,1,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	77	20	20	0.02654867256637168	0.0	A:0:C:3:G:0:T:107:N:0:O:3	A:0:C:0:G:0:T:77:N:0:O:0	0,62,3,51	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	207	96	20	20	0.028985507246376812	0.0	A:188:C:0:G:6:T:2:N:0:O:11	A:96:C:0:G:0:T:0:N:0:O:0	6,81,0,126	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	197	96	20	20	0.030456852791878174	0.0	A:0:C:184:G:0:T:6:N:0:O:7	A:0:C:96:G:0:T:0:N:0:O:0	0,128,6,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	7173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	171	20	20	0.021052631578947368	0.0	A:0:C:88:G:0:T:2:N:0:O:5	A:0:C:171:G:0:T:0:N:0:O:0	0,71,2,24	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	171	20	20	0.021739130434782608	0.0	A:0:C:0:G:2:T:90:N:0:O:0	A:0:C:0:G:0:T:171:N:0:O:0	2,33,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	184	20	20	0.08045977011494253	0.005434782608695652	A:7:C:0:G:79:T:0:N:0:O:1	A:1:C:1:G:182:T:0:N:0:O:0	7,26,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	122	20	20	0.037037037037037035	0.0	A:103:C:0:G:1:T:4:N:0:O:0	A:122:C:0:G:0:T:0:N:0:O:0	4,38,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	169	20	20	0.027777777777777776	0.0	A:0:C:3:G:0:T:105:N:0:O:0	A:0:C:0:G:0:T:169:N:0:O:0	0,61,3,47	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	57	20	20	0.021739130434782608	0.0	A:2:C:0:G:89:T:0:N:0:O:1	A:0:C:0:G:56:T:1:N:0:O:0	2,26,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	8486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	68	20	20	0.021052631578947368	0.0	A:87:C:0:G:0:T:2:N:0:O:6	A:68:C:0:G:0:T:0:N:0:O:0	0,63,2,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	127	290	20	20	1.0	1.0	A:0:C:0:G:0:T:127:N:0:O:0	A:0:C:0:G:0:T:290:N:0:O:0	62,62,65,65	348.474	1214.1	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	215	20	20	0.08108108108108109	0.0	A:6:C:1:G:66:T:0:N:0:O:1	A:0:C:0:G:215:T:0:N:0:O:0	6,8,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	8950	C	T	T	17	accept high frequency variant	Pass	False	True	True	270	371	20	20	0.9666666666666667	1.0	A:0:C:0:G:0:T:261:N:0:O:9	A:0:C:0:G:0:T:371:N:0:O:0	126,135,135,135	70.0	1470.5	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	191	20	20	0.056074766355140186	0.0	A:6:C:0:G:0:T:90:N:0:O:11	A:0:C:0:G:0:T:191:N:0:O:0	6,53,0,54	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	191	20	20	0.022727272727272728	0.0	A:0:C:84:G:0:T:2:N:0:O:2	A:1:C:190:G:0:T:0:N:0:O:0	0,40,2,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	173	20	20	0.02586206896551724	0.0	A:0:C:113:G:0:T:3:N:0:O:0	A:0:C:173:G:0:T:0:N:0:O:0	0,70,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	173	20	20	0.029411764705882353	0.005780346820809248	A:0:C:0:G:132:T:4:N:0:O:0	A:0:C:0:G:172:T:1:N:0:O:0	0,71,4,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	244	20	20	0.020618556701030927	0.0	A:1:C:93:G:0:T:2:N:0:O:1	A:1:C:243:G:0:T:0:N:0:O:0	0,63,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	184	20	20	0.02666666666666667	0.0	A:2:C:1:G:72:T:0:N:0:O:0	A:0:C:0:G:183:T:1:N:0:O:0	2,17,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	184	20	20	0.019801980198019802	0.0	A:0:C:89:G:0:T:2:N:0:O:10	A:0:C:184:G:0:T:0:N:0:O:0	2,35,0,66	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	111	111	20	20	0.02702702702702703	0.0	A:3:C:0:G:0:T:107:N:0:O:1	A:0:C:0:G:0:T:111:N:0:O:0	0,65,3,46	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	111	20	20	0.033707865168539325	0.0	A:3:C:0:G:85:T:0:N:0:O:1	A:0:C:0:G:111:T:0:N:0:O:0	3,26,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10433	C	T	C	16	ignore low frequency variant	Pass	False	False	True	250	267	20	20	0.02	0.0	A:0:C:243:G:0:T:5:N:0:O:2	A:1:C:266:G:0:T:0:N:0:O:0	0,137,5,113	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	172	20	20	0.020202020202020204	0.0	A:0:C:97:G:0:T:2:N:0:O:0	A:0:C:172:G:0:T:0:N:0:O:0	0,63,2,36	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	173	20	20	0.021052631578947368	0.017341040462427744	A:0:C:92:G:0:T:2:N:0:O:1	A:0:C:170:G:0:T:3:N:0:O:0	2,47,0,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	194	20	20	0.030612244897959183	0.0	A:0:C:95:G:0:T:3:N:0:O:0	A:0:C:194:G:0:T:0:N:0:O:0	0,68,3,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10858	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	194	20	20	0.020833333333333332	0.0	A:94:C:0:G:0:T:2:N:0:O:0	A:194:C:0:G:0:T:0:N:0:O:0	2,44,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	194	20	20	0.027777777777777776	0.0	A:0:C:0:G:3:T:103:N:0:O:2	A:0:C:0:G:0:T:194:N:0:O:0	0,56,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	10995	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	194	20	20	0.02247191011235955	0.0	A:82:C:0:G:2:T:1:N:0:O:4	A:194:C:0:G:0:T:0:N:0:O:0	2,28,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	132	20	20	0.08823529411764706	0.0	A:0:C:62:G:0:T:6:N:0:O:0	A:0:C:132:G:0:T:0:N:0:O:0	0,41,6,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	11671	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	132	20	20	0.022988505747126436	0.0	A:0:C:85:G:0:T:2:N:0:O:0	A:0:C:132:G:0:T:0:N:0:O:0	2,35,0,52	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	11995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	45	183	20	20	0.022222222222222223	0.0	A:44:C:0:G:0:T:1:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	0,37,1,8	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	11996	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	183	20	20	0.022727272727272728	0.0	A:43:C:0:G:1:T:0:N:0:O:0	A:183:C:0:G:0:T:0:N:0:O:0	0,37,1,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12478	G	A	A	13	new position validated by illumina	Pass	False	True	True	133	163	20	20	0.9774436090225563	1.0	A:130:C:0:G:0:T:0:N:0:O:3	A:163:C:0:G:0:T:0:N:0:O:0	63,66,67,67	210.0	1113.5	yes	.	.	.	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12494	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	163	20	20	0.024193548387096774	0.0	A:0:C:3:G:0:T:121:N:0:O:0	A:0:C:0:G:0:T:163:N:0:O:0	1,65,2,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12558	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	163	20	20	0.0273972602739726	0.0	A:0:C:2:G:0:T:66:N:0:O:5	A:0:C:0:G:0:T:163:N:0:O:0	0,18,2,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	163	20	20	0.060240963855421686	0.0	A:0:C:77:G:0:T:5:N:0:O:1	A:0:C:163:G:0:T:0:N:0:O:0	0,63,5,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	148	20	20	0.0297029702970297	0.0	A:95:C:0:G:3:T:0:N:0:O:3	A:148:C:0:G:0:T:0:N:0:O:0	3,59,0,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12853	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	148	20	20	0.023255813953488372	0.0	A:0:C:83:G:0:T:2:N:0:O:1	A:3:C:145:G:0:T:0:N:0:O:0	2,43,0,43	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	148	20	20	0.02654867256637168	0.0	A:107:C:0:G:3:T:0:N:0:O:3	A:148:C:0:G:0:T:0:N:0:O:0	3,44,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	12983	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	148	20	20	0.021052631578947368	0.0	A:2:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:148:T:0:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	148	20	20	0.024390243902439025	0.0	A:0:C:80:G:0:T:2:N:0:O:0	A:0:C:148:G:0:T:0:N:0:O:0	0,61,2,21	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13200	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	157	20	20	0.027777777777777776	0.0	A:0:C:128:G:0:T:4:N:0:O:12	A:0:C:157:G:0:T:0:N:0:O:0	0,74,4,70	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	157	20	20	0.02097902097902098	0.0	A:0:C:3:G:0:T:137:N:0:O:3	A:0:C:0:G:0:T:157:N:0:O:0	0,43,3,100	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	276	20	20	0.05	0.0	A:5:C:0:G:88:T:0:N:0:O:7	A:0:C:0:G:276:T:0:N:0:O:0	5,41,0,59	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	269	20	20	0.020618556701030927	0.0	A:0:C:0:G:2:T:95:N:0:O:0	A:1:C:0:G:0:T:268:N:0:O:0	1,47,1,50	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	239	20	20	0.029850746268656716	0.0	A:0:C:65:G:0:T:2:N:0:O:0	A:5:C:234:G:0:T:0:N:0:O:0	0,33,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	186	20	20	0.018867924528301886	0.0	A:2:C:98:G:0:T:0:N:0:O:6	A:0:C:186:G:0:T:0:N:0:O:0	2,49,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	188	20	20	0.029411764705882353	0.0	A:3:C:0:G:94:T:0:N:0:O:5	A:0:C:0:G:186:T:2:N:0:O:0	3,23,0,79	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	188	20	20	0.031578947368421054	0.0	A:3:C:0:G:92:T:0:N:0:O:0	A:0:C:0:G:187:T:1:N:0:O:0	3,29,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	183	20	20	0.02040816326530612	0.0	A:0:C:96:G:0:T:2:N:0:O:0	A:1:C:182:G:0:T:0:N:0:O:0	0,67,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	14545	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	183	20	20	0.021052631578947368	0.0	A:92:C:0:G:0:T:2:N:0:O:1	A:183:C:0:G:0:T:0:N:0:O:0	2,37,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	14607	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	186	20	20	0.020618556701030927	0.005376344086021506	A:94:C:0:G:2:T:0:N:0:O:1	A:185:C:0:G:1:T:0:N:0:O:0	2,53,0,44	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	186	20	20	0.021739130434782608	0.0	A:0:C:90:G:0:T:2:N:0:O:0	A:0:C:186:G:0:T:0:N:0:O:0	0,59,2,33	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	221	20	20	0.03296703296703297	0.0	A:3:C:0:G:88:T:0:N:0:O:0	A:0:C:0:G:221:T:0:N:0:O:0	3,23,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	216	20	20	0.05194805194805195	0.0	A:0:C:4:G:0:T:70:N:0:O:3	A:0:C:0:G:0:T:216:N:0:O:0	0,73,4,4	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	15380	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	172	20	20	0.02702702702702703	0.0	A:3:C:0:G:108:T:0:N:0:O:0	A:0:C:0:G:172:T:0:N:0:O:0	3,55,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	172	20	20	0.03125	0.0	A:0:C:91:G:0:T:3:N:0:O:2	A:1:C:171:G:0:T:0:N:0:O:0	0,60,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	15574	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	200	20	20	0.022727272727272728	0.0	A:3:C:0:G:129:T:0:N:0:O:0	A:0:C:0:G:197:T:3:N:0:O:0	3,64,0,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	192	20	20	0.03773584905660377	0.0	A:0:C:51:G:0:T:2:N:0:O:0	A:0:C:192:G:0:T:0:N:0:O:0	0,27,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	87	20	20	0.021739130434782608	0.0	A:0:C:88:G:0:T:2:N:0:O:2	A:0:C:87:G:0:T:0:N:0:O:0	0,62,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	107	20	20	0.02	0.0	A:0:C:98:G:0:T:2:N:0:O:0	A:0:C:107:G:0:T:0:N:0:O:0	0,63,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	16502	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	44	20	20	0.024691358024691357	0.0	A:0:C:2:G:0:T:78:N:0:O:1	A:0:C:0:G:0:T:44:N:0:O:0	0,27,2,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	16823	G	A	G	16	ignore low frequency variant	Pass	False	False	True	43	213	20	20	0.023255813953488372	0.0	A:1:C:0:G:39:T:0:N:0:O:3	A:0:C:0:G:211:T:2:N:0:O:0	1,25,0,18	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	213	20	20	0.031578947368421054	0.0	A:0:C:0:G:3:T:89:N:0:O:3	A:0:C:3:G:0:T:210:N:0:O:0	0,66,3,29	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	213	20	20	0.02027027027027027	0.0	A:3:C:0:G:114:T:0:N:0:O:31	A:0:C:0:G:209:T:4:N:0:O:0	0,84,3,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	167	354	20	20	0.023952095808383235	0.0	A:4:C:0:G:160:T:0:N:0:O:3	A:0:C:0:G:353:T:1:N:0:O:0	3,30,1,137	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	186	340	20	20	0.021505376344086023	0.0	A:180:C:0:G:4:T:0:N:0:O:2	A:340:C:0:G:0:T:0:N:0:O:0	4,68,0,118	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	161	20	20	0.05	0.0	A:73:C:0:G:4:T:0:N:0:O:3	A:161:C:0:G:0:T:0:N:0:O:0	4,14,0,66	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	161	20	20	0.05263157894736842	0.0	A:4:C:0:G:0:T:68:N:0:O:4	A:0:C:0:G:0:T:161:N:0:O:0	4,15,0,61	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	152	20	20	0.04395604395604396	0.0	A:0:C:84:G:0:T:4:N:0:O:3	A:0:C:152:G:0:T:0:N:0:O:0	0,61,4,30	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	152	20	20	0.041237113402061855	0.0	A:4:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:152:T:0:N:0:O:0	4,33,0,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	152	20	20	0.03636363636363636	0.0	A:99:C:0:G:0:T:4:N:0:O:7	A:152:C:0:G:0:T:0:N:0:O:0	0,56,4,54	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	181	20	20	0.06578947368421052	0.0	A:0:C:70:G:0:T:5:N:0:O:1	A:1:C:180:G:0:T:0:N:0:O:0	0,49,5,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	181	20	20	0.057692307692307696	0.0	A:91:C:0:G:0:T:6:N:0:O:7	A:181:C:0:G:0:T:0:N:0:O:0	0,48,6,56	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	181	20	20	0.09803921568627451	0.0	A:10:C:0:G:91:T:0:N:0:O:1	A:0:C:0:G:181:T:0:N:0:O:0	0,59,10,43	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	181	20	20	0.03225806451612903	0.0	A:0:C:87:G:0:T:3:N:0:O:3	A:0:C:181:G:0:T:0:N:0:O:0	0,58,3,35	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	167	160	20	20	0.029940119760479042	0.0	A:0:C:160:G:0:T:5:N:0:O:2	A:0:C:160:G:0:T:0:N:0:O:0	0,104,5,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	18365	T	C	T	16	ignore low frequency variant	Pass	False	False	True	201	188	20	20	0.01990049751243781	0.0	A:0:C:4:G:0:T:195:N:0:O:2	A:0:C:0:G:0:T:188:N:0:O:0	0,122,4,79	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	134	191	20	20	0.03731343283582089	0.0	A:0:C:1:G:5:T:127:N:0:O:1	A:0:C:0:G:0:T:191:N:0:O:0	5,45,0,89	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	101	183	20	20	0.9900990099009901	1.0	A:0:C:100:G:0:T:1:N:0:O:0	A:0:C:183:G:0:T:0:N:0:O:0	58,58,42,43	349.237	1534.4	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	183	20	20	0.03260869565217391	0.0	A:0:C:3:G:0:T:87:N:0:O:2	A:0:C:0:G:0:T:183:N:0:O:0	0,56,3,36	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	19043	C	T	C	16	ignore low frequency variant	Pass	False	False	True	152	190	20	20	0.03289473684210526	0.0	A:0:C:146:G:0:T:5:N:0:O:1	A:0:C:190:G:0:T:0:N:0:O:0	5,55,0,97	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	19044	T	A	T	16	ignore low frequency variant	Pass	False	False	True	192	190	20	20	0.026041666666666668	0.0	A:5:C:0:G:0:T:180:N:0:O:7	A:0:C:0:G:0:T:190:N:0:O:0	5,95,0,97	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	190	20	20	0.044444444444444446	0.0	A:6:C:0:G:127:T:0:N:0:O:2	A:0:C:0:G:190:T:0:N:0:O:0	6,25,0,110	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	26	20	20	0.09876543209876543	0.0	A:0:C:73:G:0:T:8:N:0:O:0	A:0:C:26:G:0:T:0:N:0:O:0	0,64,8,17	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	20676	A	G	A	16	ignore low frequency variant	Pass	False	False	True	171	292	20	20	0.023391812865497075	0.0	A:166:C:0:G:4:T:0:N:0:O:1	A:292:C:0:G:0:T:0:N:0:O:0	4,76,0,95	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	196	20	20	0.020202020202020204	0.0	A:95:C:0:G:2:T:0:N:0:O:2	A:196:C:0:G:0:T:0:N:0:O:0	2,30,0,69	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	196	20	20	0.030927835051546393	0.0	A:3:C:0:G:94:T:0:N:0:O:0	A:0:C:0:G:196:T:0:N:0:O:0	3,36,0,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	196	20	20	0.03773584905660377	0.0	A:51:C:0:G:2:T:0:N:0:O:0	A:196:C:0:G:0:T:0:N:0:O:0	1,1,1,52	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	196	20	20	0.020202020202020204	0.01020408163265306	A:2:C:0:G:86:T:0:N:0:O:11	A:2:C:0:G:192:T:2:N:0:O:0	1,17,1,82	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	44	196	20	20	0.022727272727272728	0.0	A:0:C:0:G:1:T:43:N:0:O:0	A:0:C:0:G:0:T:196:N:0:O:0	1,4,0,40	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	86	20	20	0.0625	0.0	A:0:C:0:G:82:T:6:N:0:O:8	A:0:C:0:G:86:T:0:N:0:O:0	0,69,6,27	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	138	20	20	0.0392156862745098	0.0	A:0:C:98:G:0:T:4:N:0:O:0	A:0:C:138:G:0:T:0:N:0:O:0	0,60,4,42	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	149	20	20	0.03418803418803419	0.0	A:0:C:113:G:0:T:4:N:0:O:0	A:0:C:149:G:0:T:0:N:0:O:0	0,65,4,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	149	20	20	0.028169014084507043	0.0	A:2:C:0:G:69:T:0:N:0:O:0	A:0:C:0:G:149:T:0:N:0:O:0	2,59,0,12	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	108	20	20	0.014705882352941176	0.0	A:0:C:1:G:0:T:49:N:0:O:18	A:0:C:0:G:0:T:108:N:0:O:0	0,46,1,22	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	179	20	20	0.036585365853658534	0.0	A:0:C:77:G:0:T:3:N:0:O:2	A:0:C:179:G:0:T:0:N:0:O:0	0,50,3,32	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	232	20	20	0.043010752688172046	0.0	A:89:C:0:G:0:T:4:N:0:O:0	A:232:C:0:G:0:T:0:N:0:O:0	3,35,1,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	233	20	20	0.06097560975609756	0.0	A:5:C:0:G:75:T:0:N:0:O:2	A:0:C:0:G:233:T:0:N:0:O:0	4,18,1,64	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21489	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	237	20	20	0.024390243902439025	0.0	A:77:C:1:G:2:T:0:N:0:O:2	A:237:C:0:G:0:T:0:N:0:O:0	2,19,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	238	20	20	0.03389830508474576	0.0	A:0:C:4:G:0:T:114:N:0:O:0	A:0:C:0:G:0:T:238:N:0:O:0	0,70,4,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	169	20	20	0.021505376344086023	0.0	A:0:C:88:G:0:T:2:N:0:O:3	A:3:C:166:G:0:T:0:N:0:O:0	1,25,1,68	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	169	20	20	0.02586206896551724	0.0	A:112:C:0:G:3:T:0:N:0:O:1	A:169:C:0:G:0:T:0:N:0:O:0	3,45,0,71	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	169	20	20	0.03125	0.0	A:4:C:0:G:119:T:0:N:0:O:5	A:0:C:0:G:169:T:0:N:0:O:0	4,55,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	170	20	20	0.031496062992125984	0.0	A:4:C:0:G:123:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	2,60,2,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	170	20	20	0.05185185185185185	0.0	A:7:C:0:G:128:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	7,53,0,82	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	22212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	170	20	20	0.02564102564102564	0.0	A:0:C:113:G:0:T:3:N:0:O:1	A:0:C:170:G:0:T:0:N:0:O:0	3,68,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	22378	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	182	20	20	0.023809523809523808	0.0	A:0:C:3:G:0:T:123:N:0:O:0	A:0:C:0:G:0:T:182:N:0:O:0	0,65,3,61	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	187	20	20	0.022727272727272728	0.0	A:42:C:0:G:1:T:0:N:0:O:1	A:187:C:0:G:0:T:0:N:0:O:0	1,8,0,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	181	20	20	0.02857142857142857	0.0	A:1:C:0:G:3:T:101:N:0:O:0	A:0:C:0:G:0:T:181:N:0:O:0	3,32,0,73	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	157	20	20	0.022388059701492536	0.0	A:3:C:0:G:131:T:0:N:0:O:0	A:0:C:0:G:157:T:0:N:0:O:0	3,33,0,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	181	20	20	0.021739130434782608	0.0	A:45:C:0:G:1:T:0:N:0:O:0	A:181:C:0:G:0:T:0:N:0:O:0	1,27,0,19	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	23772	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	182	20	20	0.03125	0.0	A:122:C:0:G:4:T:0:N:0:O:2	A:182:C:0:G:0:T:0:N:0:O:0	4,50,0,78	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	154	20	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	2,19,0,72	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	154	20	20	0.07339449541284404	0.0	A:0:C:101:G:0:T:8:N:0:O:0	A:0:C:154:G:0:T:0:N:0:O:0	0,83,8,26	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	154	20	20	0.03333333333333333	0.01948051948051948	A:0:C:4:G:0:T:116:N:0:O:0	A:0:C:3:G:0:T:151:N:0:O:0	0,84,4,36	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	142	154	20	20	0.04929577464788732	0.0	A:135:C:0:G:0:T:7:N:0:O:0	A:154:C:0:G:0:T:0:N:0:O:0	7,77,0,65	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	154	20	20	0.09722222222222222	0.0	A:7:C:0:G:0:T:65:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	7,24,0,48	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	154	20	20	0.02702702702702703	0.0	A:2:C:0:G:71:T:0:N:0:O:1	A:0:C:0:G:154:T:0:N:0:O:0	2,65,0,9	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	136	154	20	20	0.9926470588235294	1.0	A:0:C:1:G:0:T:135:N:0:O:0	A:0:C:0:G:0:T:154:N:0:O:0	66,66,69,70	209.237	693.3	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	155	20	20	0.05263157894736842	0.0	A:4:C:0:G:72:T:0:N:0:O:0	A:0:C:0:G:154:T:0:N:0:O:1	4,11,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	158	20	20	0.05555555555555555	0.0	A:0:C:59:G:0:T:4:N:0:O:9	A:0:C:158:G:0:T:0:N:0:O:0	0,65,4,7	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	158	20	20	0.056179775280898875	0.0	A:5:C:0:G:80:T:0:N:0:O:4	A:0:C:0:G:157:T:1:N:0:O:0	5,24,0,65	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	108	158	20	20	0.027777777777777776	0.0	A:0:C:0:G:103:T:3:N:0:O:2	A:0:C:0:G:158:T:0:N:0:O:0	0,56,3,52	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24422	C	T	C	16	ignore low frequency variant	Pass	False	False	True	240	328	20	20	0.020833333333333332	0.0	A:3:C:214:G:0:T:5:N:0:O:18	A:2:C:325:G:0:T:0:N:0:O:1	0,164,5,76	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	106	186	20	20	0.02830188679245283	0.0	A:102:C:3:G:0:T:0:N:0:O:1	A:186:C:0:G:0:T:0:N:0:O:0	3,68,0,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	186	20	20	0.023076923076923078	0.0	A:0:C:123:G:0:T:3:N:0:O:4	A:1:C:185:G:0:T:0:N:0:O:0	1,104,2,26	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	182	20	20	0.018018018018018018	0.0	A:2:C:0:G:90:T:0:N:0:O:19	A:0:C:0:G:181:T:1:N:0:O:0	2,36,0,75	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	182	20	20	0.02197802197802198	0.0	A:89:C:0:G:2:T:0:N:0:O:0	A:182:C:0:G:0:T:0:N:0:O:0	2,32,0,59	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	182	20	20	0.024793388429752067	0.005494505494505495	A:0:C:0:G:118:T:3:N:0:O:0	A:0:C:0:G:181:T:1:N:0:O:0	3,57,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	182	20	20	0.02040816326530612	0.0	A:2:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:182:T:0:N:0:O:0	0,61,2,37	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	182	20	20	0.022222222222222223	0.0	A:0:C:0:G:2:T:87:N:0:O:1	A:0:C:0:G:0:T:182:N:0:O:0	0,56,2,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	32	182	20	20	0.03125	0.0	A:0:C:1:G:0:T:30:N:0:O:1	A:0:C:0:G:0:T:182:N:0:O:0	1,26,0,6	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	25285	T	A	T	16	ignore low frequency variant	Pass	False	False	True	119	175	20	20	0.025210084033613446	0.0	A:3:C:0:G:0:T:116:N:0:O:0	A:0:C:0:G:0:T:175:N:0:O:0	0,64,3,55	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	176	20	20	0.04716981132075472	0.0	A:101:C:0:G:0:T:5:N:0:O:0	A:176:C:0:G:0:T:0:N:0:O:0	5,48,0,58	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	176	20	20	0.022988505747126436	0.0	A:0:C:1:G:2:T:82:N:0:O:2	A:0:C:0:G:0:T:176:N:0:O:0	2,31,0,56	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	25603	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	176	20	20	0.02	0.028409090909090908	A:0:C:98:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:5:N:0:O:0	0,47,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	171	20	20	0.025974025974025976	0.0	A:2:C:0:G:74:T:0:N:0:O:1	A:0:C:0:G:171:T:0:N:0:O:0	2,14,0,63	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	53	171	20	20	0.09433962264150944	0.0	A:48:C:5:G:0:T:0:N:0:O:0	A:171:C:0:G:0:T:0:N:0:O:0	2,29,3,24	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	171	20	20	0.029411764705882353	0.0	A:0:C:98:G:0:T:3:N:0:O:1	A:0:C:171:G:0:T:0:N:0:O:0	0,68,3,34	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	171	20	20	0.02531645569620253	0.0	A:76:C:0:G:2:T:0:N:0:O:1	A:171:C:0:G:0:T:0:N:0:O:0	2,22,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	171	20	20	0.02857142857142857	0.0	A:3:C:0:G:102:T:0:N:0:O:0	A:0:C:0:G:171:T:0:N:0:O:0	3,38,0,67	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	179	20	20	0.020833333333333332	0.0	A:0:C:73:G:0:T:2:N:0:O:21	A:0:C:179:G:0:T:0:N:0:O:0	0,91,2,5	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26374	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	179	20	20	0.021052631578947368	0.0	A:0:C:2:G:0:T:93:N:0:O:0	A:0:C:0:G:0:T:179:N:0:O:0	0,65,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	179	20	20	0.05263157894736842	0.0	A:5:C:0:G:90:T:0:N:0:O:0	A:0:C:0:G:179:T:0:N:0:O:0	5,27,0,68	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	341	20	20	0.06748466257668712	0.0	A:0:C:151:G:0:T:11:N:0:O:1	A:1:C:340:G:0:T:0:N:0:O:0	0,135,11,28	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	192	342	20	20	0.026041666666666668	0.0	A:0:C:5:G:0:T:187:N:0:O:0	A:0:C:0:G:0:T:342:N:0:O:0	0,139,5,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26589	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	170	20	20	0.020618556701030927	0.0	A:0:C:0:G:94:T:2:N:0:O:1	A:0:C:0:G:170:T:0:N:0:O:0	2,48,0,49	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	170	20	20	0.022727272727272728	0.0	A:0:C:85:G:0:T:2:N:0:O:1	A:1:C:169:G:0:T:0:N:0:O:0	1,40,1,48	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26609	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	170	20	20	0.027777777777777776	0.0	A:0:C:2:G:0:T:68:N:0:O:2	A:0:C:0:G:0:T:170:N:0:O:0	1,34,1,38	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	170	20	20	0.023529411764705882	0.0	A:82:C:0:G:0:T:2:N:0:O:1	A:170:C:0:G:0:T:0:N:0:O:0	2,18,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	170	20	20	0.05128205128205128	0.0	A:4:C:0:G:74:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	4,11,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	109	170	20	20	0.9724770642201835	0.9882352941176471	A:0:C:106:G:0:T:0:N:0:O:3	A:2:C:168:G:0:T:0:N:0:O:0	62,65,44,44	204.466	1272.3	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	170	20	20	0.037037037037037035	0.0	A:0:C:77:G:0:T:3:N:0:O:1	A:1:C:169:G:0:T:0:N:0:O:0	0,63,3,18	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	170	20	20	0.021505376344086023	0.0	A:0:C:90:G:0:T:2:N:0:O:1	A:0:C:170:G:0:T:0:N:0:O:0	0,63,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26786	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	170	20	20	0.02040816326530612	0.0	A:96:C:0:G:2:T:0:N:0:O:0	A:170:C:0:G:0:T:0:N:0:O:0	2,41,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	170	20	20	0.03125	0.0	A:3:C:0:G:93:T:0:N:0:O:0	A:0:C:0:G:170:T:0:N:0:O:0	3,39,0,57	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	26943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	171	20	20	0.030303030303030304	0.0	A:3:C:0:G:96:T:0:N:0:O:0	A:0:C:0:G:170:T:1:N:0:O:0	3,36,0,63	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	171	20	20	0.03225806451612903	0.0	A:0:C:60:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,53,2,9	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	171	20	20	0.025	0.0	A:0:C:78:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	0,60,2,20	.	.	no	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27154	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	171	20	20	0.021505376344086023	0.0	A:0:C:91:G:0:T:2:N:0:O:0	A:0:C:171:G:0:T:0:N:0:O:0	2,29,0,64	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	247	20	20	0.058823529411764705	0.008097165991902834	A:6:C:95:G:0:T:0:N:0:O:1	A:2:C:245:G:0:T:0:N:0:O:0	6,53,0,49	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	162	247	20	20	0.037037037037037035	0.0	A:126:C:0:G:0:T:6:N:0:O:30	A:247:C:0:G:0:T:0:N:0:O:0	6,90,0,72	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	200	20	20	0.03409090909090909	0.0	A:3:C:0:G:82:T:0:N:0:O:3	A:0:C:0:G:198:T:2:N:0:O:0	3,12,0,76	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	167	20	20	0.05357142857142857	0.0	A:6:C:0:G:105:T:0:N:0:O:1	A:0:C:0:G:163:T:4:N:0:O:0	6,42,0,70	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	167	20	20	0.04672897196261682	0.0	A:102:C:0:G:5:T:0:N:0:O:0	A:167:C:0:G:0:T:0:N:0:O:0	5,40,0,67	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	167	20	20	0.020618556701030927	0.0	A:0:C:94:G:0:T:2:N:0:O:1	A:1:C:166:G:0:T:0:N:0:O:0	0,66,2,31	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	119	167	20	20	0.9915966386554622	0.9940119760479041	A:0:C:118:G:0:T:0:N:0:O:1	A:1:C:166:G:0:T:0:N:0:O:0	66,67,52,52	280.0	1762.6	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	239	318	20	20	0.9916317991631799	0.9779874213836478	A:0:C:237:G:0:T:1:N:0:O:1	A:6:C:311:G:1:T:0:N:0:O:0	115,117,122,122	280.0	1346.8	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	28471	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	163	20	20	0.034482758620689655	0.0	A:0:C:84:G:0:T:3:N:0:O:0	A:2:C:161:G:0:T:0:N:0:O:0	1,57,2,30	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	163	20	20	0.023529411764705882	0.0	A:2:C:0:G:83:T:0:N:0:O:0	A:0:C:0:G:162:T:1:N:0:O:0	2,27,0,58	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	128	183	20	20	1.0	1.0	A:0:C:0:G:128:T:0:N:0:O:0	A:0:C:0:G:183:T:0:N:0:O:0	51,51,77,77	58.823	1847.6	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	184	20	20	0.0425531914893617	0.005434782608695652	A:4:C:83:G:0:T:1:N:0:O:6	A:1:C:183:G:0:T:0:N:0:O:0	4,54,0,40	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	139	20	20	0.037037037037037035	0.0	A:51:C:0:G:2:T:0:N:0:O:1	A:139:C:0:G:0:T:0:N:0:O:0	0,1,2,53	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	140	20	20	0.025210084033613446	0.0	A:3:C:0:G:114:T:0:N:0:O:2	A:0:C:0:G:140:T:0:N:0:O:0	2,18,1,101	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	140	20	20	0.025	0.0	A:112:C:0:G:3:T:0:N:0:O:5	A:140:C:0:G:0:T:0:N:0:O:0	3,24,0,96	.	.	no	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	140	20	20	0.02142857142857143	0.0	A:3:C:0:G:115:T:0:N:0:O:22	A:0:C:0:G:140:T:0:N:0:O:0	3,39,0,101	.	.	no	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00065	artic-pipeline	NB10	MN908947.3	29451	C	T	T	17	accept high frequency variant	Pass	False	True	True	179	140	20	20	0.9720670391061452	1.0	A:0:C:0:G:0:T:174:N:0:O:5	A:0:C:0:G:0:T:140:N:0:O:0	93,98,81,81	280.0	2123.4	yes	.	.	.	.	.	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	115	61	20	20	0.782608695652174	1.0	A:3:C:0:G:90:T:1:N:0:O:21	A:0:C:0:G:61:T:0:N:0:O:0	31,56,59,59	259.325	967.8	yes	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00065	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	147	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.018518518518518517	.	A:1:C:0:G:0:T:48:N:0:O:5	.	0,12,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	84	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:56:G:0:T:2:N:0:O:3	.	0,12,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	85	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:0:C:2:G:0:T:47:N:0:O:2	.	0,9,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	143	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:42:C:1:G:0:T:0:N:0:O:1	.	0,11,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	145	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:0:G:1:T:42:N:0:O:0	.	0,10,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	180	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:0:C:34:G:0:T:2:N:0:O:4	.	0,9,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	193	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:43:G:0:T:1:N:0:O:2	.	0,9,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:0:G:49:T:0:N:0:O:0	.	0,7,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	238	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:1:T:46:N:0:O:0	.	1,8,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	55	.	20	.	0.9818181818181818	.	A:0:C:0:G:0:T:54:N:0:O:1	.	8,9,46,46	70.0	1529.8	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	249	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:1:T:46:N:0:O:0	.	0,7,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:1:G:0:T:47:N:0:O:3	.	0,11,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,3,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	334	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,3,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	335	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:34:G:0:T:1:N:0:O:1	.	0,3,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:103:N:0:O:0	.	0,69,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	3,41,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	629	C	T	T	12	misc mixed variant	Check	False	True	True	120	.	20	.	0.7333333333333333	.	A:0:C:1:G:0:T:88:N:0:O:31	.	24,56,64,64	55.257	1195.5	.	.	.	.	mixed position	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	726	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	0,67,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	776	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	1,55,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:77:T:0:N:0:O:1	.	4,15,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	1.0	.	A:0:C:0:G:0:T:140:N:0:O:0	.	74,74,66,66	70.0	1417.1	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	1182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:116:N:0:O:0	.	0,61,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	1336	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:0:T:96:N:0:O:1	.	0,49,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:1:N:0:O:0	.	2,51,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:111:T:0:N:0:O:15	.	3,63,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:32:C:0:G:1:T:0:N:0:O:2	.	1,3,0,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	1971	T	C	T	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.024844720496894408	.	A:0:C:4:G:0:T:157:N:0:O:0	.	2,80,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.06422018348623854	.	A:7:C:0:G:102:T:0:N:0:O:0	.	7,31,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:75:T:0:N:0:O:1	.	0,25,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.030303030303030304	.	A:159:C:5:G:0:T:0:N:0:O:1	.	4,82,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.038461538461538464	.	A:147:C:0:G:6:T:0:N:0:O:3	.	5,80,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	2933	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:93:G:0:T:4:N:0:O:3	.	0,51,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.6349206349206349	.	A:0:C:0:G:0:T:80:N:0:O:46	.	45,91,35,35	52.335	1456.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:75:T:2:N:0:O:12	.	0,63,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.031746031746031744	.	A:115:C:0:G:4:T:0:N:0:O:7	.	4,40,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:73:G:0:T:2:N:0:O:0	.	0,40,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	3414	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:59:C:0:G:0:T:2:N:0:O:1	.	2,30,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:1:T:0:N:0:O:1	.	1,3,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:89:G:0:T:4:N:0:O:0	.	0,66,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	233	.	20	.	0.02575107296137339	.	A:6:C:0:G:214:T:0:N:0:O:13	.	6,69,0,164	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.019801980198019802	.	A:0:C:0:G:175:T:4:N:0:O:23	.	0,177,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.02510460251046025	.	A:6:C:0:G:231:T:0:N:0:O:2	.	0,130,6,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.02127659574468085	.	A:0:C:211:G:0:T:5:N:0:O:19	.	0,144,5,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:126:C:0:G:0:T:4:N:0:O:6	.	0,74,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	4943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:75:G:0:T:2:N:0:O:4	.	0,67,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,44,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,41,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:89:C:0:G:0:T:2:N:0:O:4	.	0,46,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	0,63,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:0:C:65:G:0:T:4:N:0:O:1	.	0,61,4,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	5744	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:105:N:0:O:9	.	0,71,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:4:G:0:T:80:N:0:O:0	.	0,58,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:95:G:0:T:3:N:0:O:1	.	0,68,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.12359550561797752	.	A:0:C:76:G:0:T:11:N:0:O:2	.	0,65,11,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:5:G:0:T:87:N:0:O:14	.	2,56,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	2,50,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:0:C:120:G:0:T:4:N:0:O:0	.	0,67,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:4:G:0:T:104:N:0:O:5	.	0,75,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:105:G:0:T:4:N:0:O:10	.	0,81,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,59,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.03125	.	A:207:C:0:G:7:T:3:N:0:O:7	.	7,96,0,128	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:74:G:0:T:4:N:0:O:17	.	0,79,4,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:86:G:0:T:2:N:0:O:8	.	0,72,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:2:G:0:T:0:N:0:O:0	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	7963	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:0:T:104:N:0:O:0	.	0,47,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:120:C:4:G:0:T:0:N:0:O:0	.	0,72,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	8103	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,76,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	8141	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:96:N:0:O:0	.	2,49,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:121:N:0:O:2	.	0,75,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:0:C:5:G:0:T:97:N:0:O:0	.	0,63,5,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:4:C:0:G:68:T:0:N:0:O:2	.	4,7,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:105:T:0:N:0:O:2	.	4,44,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:74:G:0:T:2:N:0:O:2	.	2,28,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,66,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,62,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:71:G:0:T:3:N:0:O:3	.	0,30,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:89:G:0:T:2:N:0:O:13	.	0,68,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10129	T	C	T	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.030303030303030304	.	A:0:C:6:G:0:T:187:N:0:O:5	.	1,130,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,23,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	233	.	20	.	0.02145922746781116	.	A:5:C:0:G:226:T:0:N:0:O:2	.	5,97,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:0:C:94:G:0:T:4:N:0:O:1	.	0,67,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	10489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.029411764705882353	.	A:0:C:2:G:0:T:65:N:0:O:1	.	0,34,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.04424778761061947	.	A:107:C:0:G:5:T:0:N:0:O:1	.	5,44,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10687	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:120:N:0:O:0	.	0,74,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:103:G:0:T:4:N:0:O:0	.	0,70,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:74:T:0:N:0:O:2	.	2,8,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:1:G:3:T:101:N:0:O:2	.	0,55,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:4:C:100:G:0:T:0:N:0:O:9	.	4,56,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	10995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:69:C:0:G:0:T:3:N:0:O:2	.	0,21,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	11014	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:120:T:0:N:0:O:0	.	3,55,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	11453	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:87:T:2:N:0:O:0	.	0,52,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:0:C:67:G:0:T:5:N:0:O:1	.	0,50,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	11811	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	2,41,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	11812	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:85:G:0:T:0:N:0:O:5	.	2,44,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	11887	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:2:G:0:T:0:N:0:O:0	.	2,48,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:68:C:0:G:2:T:0:N:0:O:0	.	0,51,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:95:T:0:N:0:O:4	.	4,34,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	12437	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	1,49,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.02926829268292683	.	A:6:C:0:G:197:T:0:N:0:O:2	.	6,69,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:0:T:2:N:0:O:1	.	1,35,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	12749	G	T	G	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.024896265560165973	.	A:0:C:0:G:232:T:6:N:0:O:3	.	6,116,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:98:N:0:O:3	.	0,65,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	12995	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:90:T:1:N:0:O:0	.	3,34,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:105:G:0:T:3:N:0:O:1	.	0,63,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:92:T:0:N:0:O:3	.	2,35,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:67:G:0:T:2:N:0:O:0	.	0,67,2,2	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:99:T:0:N:0:O:8	.	4,42,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:0:G:5:T:97:N:0:O:2	.	0,49,5,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13643	C	T	C	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:0:C:199:G:0:T:5:N:0:O:2	.	0,133,5,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:0:G:84:T:0:N:0:O:3	.	5,23,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:38:C:0:G:1:T:0:N:0:O:4	.	0,5,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:75:G:0:T:2:N:0:O:3	.	0,71,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:106:T:0:N:0:O:1	.	3,47,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:92:G:0:T:2:N:0:O:3	.	0,76,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	87	.	20	.	0.9770114942528736	.	A:0:C:1:G:0:T:85:N:0:O:1	.	49,50,36,37	390.826	1260.3	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	14914	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:98:G:0:T:0:N:0:O:3	.	2,50,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:108:T:0:N:0:O:1	.	3,43,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:90:C:0:G:3:T:0:N:0:O:1	.	0,48,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	15579	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:0:C:139:G:0:T:4:N:0:O:16	.	3,84,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.15555555555555556	.	A:0:C:38:G:0:T:7:N:0:O:0	.	0,25,7,20	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:100:G:0:T:4:N:0:O:1	.	0,62,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	16258	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:0:G:2:T:98:N:0:O:6	.	0,52,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:0:C:89:G:0:T:5:N:0:O:0	.	0,65,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.05217391304347826	.	A:0:C:0:G:106:T:6:N:0:O:3	.	6,56,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:96:G:0:T:2:N:0:O:5	.	0,65,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:62:T:0:N:0:O:7	.	2,18,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:75:C:0:G:2:T:0:N:0:O:0	.	1,41,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:1:C:86:G:0:T:3:N:0:O:2	.	0,61,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.041176470588235294	.	A:7:C:0:G:157:T:0:N:0:O:6	.	7,36,0,134	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:75:C:0:G:2:T:0:N:0:O:2	.	2,53,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:78:C:0:G:2:T:0:N:0:O:2	.	2,11,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:0:T:72:N:0:O:0	.	2,11,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.06382978723404255	.	A:0:C:85:G:0:T:6:N:0:O:3	.	0,65,6,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,25,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:86:G:0:T:4:N:0:O:3	.	0,43,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17939	C	A	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:120:G:0:T:0:N:0:O:26	.	0,71,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:82:T:0:N:0:O:1	.	3,25,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	216	.	20	.	0.027777777777777776	.	A:6:C:0:G:209:T:0:N:0:O:1	.	6,96,0,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:85:G:0:T:2:N:0:O:1	.	0,69,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:4:C:0:G:0:T:100:N:0:O:16	.	4,44,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.045454545454545456	.	A:0:C:147:G:0:T:7:N:0:O:0	.	0,94,7,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:0:G:4:T:117:N:0:O:0	.	3,38,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:84:C:0:G:3:T:0:N:0:O:2	.	3,41,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:99:T:0:N:0:O:1	.	3,40,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:3:C:0:G:73:T:1:N:0:O:2	.	3,24,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.047619047619047616	.	A:38:C:0:G:0:T:2:N:0:O:2	.	1,23,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	0,56,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:4:C:0:G:132:T:0:N:0:O:0	.	4,30,0,106	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.09375	.	A:0:C:56:G:0:T:6:N:0:O:2	.	0,49,6,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,33,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:0:G:0:T:2:N:0:O:2	.	0,65,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:0:G:2:T:66:N:0:O:1	.	0,36,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	20029	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:120:T:0:N:0:O:3	.	3,53,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:91:C:0:G:3:T:0:N:0:O:6	.	3,25,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	20409	T	G	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:0:G:2:T:72:N:0:O:3	.	0,47,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	20659	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:127:N:0:O:4	.	0,57,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	20661	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:4:C:0:G:0:T:132:N:0:O:0	.	0,59,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:111:C:0:G:4:T:0:N:0:O:7	.	1,58,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,44,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:112:T:0:N:0:O:0	.	3,52,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21059	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	1,49,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.12087912087912088	.	A:0:C:0:G:74:T:11:N:0:O:6	.	0,64,11,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:1:C:0:G:0:T:32:N:0:O:23	.	1,50,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,58,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:83:T:0:N:0:O:1	.	4,16,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21772	C	T	T	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:0:G:0:T:124:N:0:O:0	.	79,79,45,45	140.0	1812.5	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,38,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:4:C:0:G:119:T:0:N:0:O:11	.	4,65,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:4:C:0:G:118:T:0:N:0:O:0	.	1,46,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	0,8,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	22784	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:142:C:1:G:3:T:0:N:0:O:3	.	3,51,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.03723404255319149	.	A:0:C:0:G:7:T:153:N:0:O:28	.	0,107,7,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:104:N:0:O:5	.	0,102,3,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:121:G:0:T:3:N:0:O:25	.	0,125,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.02857142857142857	.	A:0:C:5:G:0:T:170:N:0:O:0	.	0,106,5,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9411764705882353	.	A:0:C:0:G:128:T:0:N:0:O:8	.	65,73,63,63	140.0	1584.8	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	23453	C	T	T	17	accept high frequency variant	Pass	False	True	True	103	.	20	.	0.9805825242718447	.	A:1:C:1:G:0:T:101:N:0:O:0	.	69,69,32,34	64.466	1699.5	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:6:C:0:G:77:T:0:N:0:O:4	.	6,18,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23579	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:1:T:2:N:0:O:0	.	0,47,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:0:C:93:G:0:T:7:N:0:O:1	.	0,72,7,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:106:N:0:O:0	.	0,72,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:1:C:104:G:1:T:3:N:0:O:4	.	2,54,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02702702702702703	.	A:144:C:0:G:0:T:4:N:0:O:0	.	3,71,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:3:C:0:G:0:T:69:N:0:O:0	.	3,13,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.06666666666666667	.	A:5:C:0:G:68:T:0:N:0:O:2	.	5,15,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:70:T:0:N:0:O:2	.	3,16,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:0:C:62:G:0:T:4:N:0:O:8	.	0,63,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:107:C:0:G:5:T:0:N:0:O:2	.	5,46,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24677	A	T	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:0:T:1:N:0:O:0	.	0,3,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:94:C:0:G:4:T:0:N:0:O:0	.	4,34,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:90:T:0:N:0:O:0	.	0,60,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:0:G:3:T:89:N:0:O:0	.	0,60,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:127:C:0:G:3:T:0:N:0:O:1	.	2,58,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	39	.	20	.	0.07692307692307693	.	A:0:C:3:G:0:T:36:N:0:O:0	.	3,30,0,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	25370	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:0:T:90:N:0:O:0	.	2,45,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25372	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,36,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:0:T:3:N:0:O:0	.	3,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25552	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:0:G:78:T:2:N:0:O:5	.	2,31,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	103	.	20	.	1.0	.	A:0:C:0:G:0:T:103:N:0:O:0	.	49,49,54,54	416.227	1738.8	.	.	.	.	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	25613	C	G	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:54:G:2:T:1:N:0:O:1	.	0,16,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:72:N:0:O:0	.	0,66,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:72:T:0:N:0:O:5	.	2,11,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.08333333333333333	.	A:42:C:4:G:0:T:0:N:0:O:2	.	1,29,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,49,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:106:G:0:T:4:N:0:O:0	.	0,63,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:111:C:0:G:4:T:0:N:0:O:5	.	4,40,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:89:C:0:G:2:T:0:N:0:O:2	.	2,24,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,29,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:88:G:0:T:4:N:0:O:33	.	0,103,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:84:G:0:T:5:N:0:O:1	.	0,57,5,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:84:T:0:N:0:O:1	.	5,23,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.03529411764705882	.	A:0:C:164:G:0:T:6:N:0:O:0	.	0,136,6,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.03255813953488372	.	A:0:C:7:G:0:T:208:N:0:O:0	.	0,147,7,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:86:G:0:T:2:N:0:O:3	.	0,47,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:79:C:0:G:0:T:2:N:0:O:1	.	2,19,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:4:C:0:G:66:T:0:N:0:O:0	.	4,6,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:0:C:75:G:0:T:4:N:0:O:0	.	0,61,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:97:G:0:T:4:N:0:O:1	.	0,65,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.02564102564102564	.	A:0:C:149:G:0:T:4:N:0:O:3	.	0,148,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:81:C:0:G:2:T:0:N:0:O:7	.	2,37,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:0:G:75:T:0:N:0:O:0	.	3,16,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.13095238095238096	.	A:0:C:73:G:0:T:11:N:0:O:0	.	0,60,11,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	27281	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:0:G:125:T:3:N:0:O:0	.	2,63,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	27686	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:77:G:0:T:2:N:0:O:1	.	2,56,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	28313	C	G	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:74:G:2:T:1:N:0:O:0	.	0,52,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:83:C:0:G:2:T:1:N:0:O:5	.	2,23,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:95:G:0:T:3:N:0:O:4	.	0,70,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	28867	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:72:N:0:O:19	.	0,77,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00067	artic-pipeline	NB12	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:89:T:0:N:0:O:0	.	3,16,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:79:G:0:T:4:N:0:O:4	.	0,49,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	28933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,47,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	28963	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:0:G:2:T:98:N:0:O:7	.	1,37,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.019704433497536946	.	A:0:C:4:G:0:T:196:N:0:O:3	.	0,128,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:1:G:75:T:0:N:0:O:3	.	3,10,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29120	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:1:C:94:G:0:T:2:N:0:O:4	.	0,56,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:95:N:0:O:3	.	0,69,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:53:C:0:G:2:T:0:N:0:O:0	.	2,7,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:0:G:103:T:0:N:0:O:17	.	4,35,0,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:0:G:2:T:0:N:0:O:2	.	1,34,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	29777	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	1,41,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00067	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	60	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,9,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	76	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,8,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:0:T:1:N:0:O:1	.	0,10,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	128	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,4,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	143	A	C	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:1:G:0:T:0:N:0:O:0	.	0,5,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:33:N:0:O:1	.	0,7,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	173	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:21:G:0:T:1:N:0:O:1	.	0,9,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,4,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	202	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,6,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	203	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:30:G:0:T:1:N:0:O:1	.	0,7,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	211	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,5,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	0,5,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:35:T:0:N:0:O:0	.	1,2,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	42	.	20	.	0.9523809523809523	.	A:0:C:0:G:0:T:40:N:0:O:2	.	5,7,35,35	553.703	1281.1	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	252	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:44:T:1:N:0:O:0	.	0,7,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	267	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:48:N:0:O:1	.	0,9,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	0,10,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	328	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	0,9,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	0.9774436090225563	.	A:0:C:1:G:0:T:130:N:0:O:2	.	67,70,63,63	350.0	1379.2	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:73:T:0:N:0:O:20	.	2,12,2,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,53,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:68:C:2:G:0:T:0:N:0:O:1	.	0,48,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:57:C:0:G:2:T:0:N:0:O:0	.	0,8,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:112:T:0:N:0:O:7	.	0,57,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	0,7,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:38:C:0:G:2:T:0:N:0:O:0	.	0,1,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1889	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:123:G:0:T:3:N:0:O:2	.	1,65,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:80:C:2:G:0:T:0:N:0:O:1	.	0,53,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	2193	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:115:T:0:N:0:O:4	.	3,54,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.0625	.	A:7:C:0:G:105:T:0:N:0:O:0	.	7,42,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:124:C:5:G:0:T:0:N:0:O:0	.	5,57,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	2476	A	G	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:67:C:1:G:3:T:0:N:0:O:0	.	0,1,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	2477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:1:G:80:T:0:N:0:O:0	.	0,11,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:162:C:0:G:4:T:0:N:0:O:3	.	4,94,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	127	.	20	.	0.5905511811023622	.	A:1:C:0:G:0:T:75:N:0:O:51	.	44,95,31,32	179.704	1465.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	3132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:100:C:0:G:5:T:0:N:0:O:1	.	0,50,5,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3133	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:96:C:3:G:0:T:0:N:0:O:1	.	0,51,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:0:G:88:T:4:N:0:O:0	.	0,39,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:104:N:0:O:5	.	0,65,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:0:C:0:G:83:T:4:N:0:O:7	.	0,59,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:88:C:0:G:3:T:0:N:0:O:2	.	3,11,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3378	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:115:N:0:O:0	.	1,63,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,41,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:0:C:91:G:0:T:5:N:0:O:2	.	0,75,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	0,42,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.023696682464454975	.	A:5:C:0:G:192:T:0:N:0:O:14	.	5,68,0,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:0:T:102:N:0:O:35	.	0,83,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:0:C:91:G:0:T:4:N:0:O:0	.	0,64,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:87:G:0:T:3:N:0:O:5	.	0,67,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,66,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:77:C:0:G:0:T:2:N:0:O:1	.	2,17,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:85:G:0:T:3:N:0:O:1	.	3,24,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:87:T:0:N:0:O:0	.	4,25,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	5539	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,38,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:92:T:0:N:0:O:0	.	1,51,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	0,50,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.028708133971291867	.	A:0:C:198:G:0:T:6:N:0:O:5	.	0,128,6,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:98:G:0:T:2:N:0:O:3	.	0,61,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:0:C:65:G:0:T:5:N:0:O:0	.	0,60,5,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	2,52,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:79:T:0:N:0:O:24	.	0,24,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5874	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5935	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:80:C:0:G:4:T:0:N:0:O:2	.	4,15,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	5936	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:79:T:0:N:0:O:2	.	4,12,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:0:C:80:G:0:T:4:N:0:O:1	.	0,65,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6087	T	A	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:0:T:134:N:0:O:7	.	1,69,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	224	.	20	.	0.026785714285714284	.	A:6:C:0:G:210:T:0:N:0:O:8	.	6,86,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:87:G:0:T:2:N:0:O:4	.	0,64,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:95:N:0:O:3	.	0,68,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:87:G:0:T:2:N:0:O:7	.	1,71,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	2,39,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:4:G:0:T:108:N:0:O:3	.	0,62,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.0330188679245283	.	A:201:C:0:G:7:T:0:N:0:O:4	.	7,95,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	7031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:89:C:1:G:2:T:0:N:0:O:2	.	0,56,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.09195402298850575	.	A:76:C:0:G:0:T:8:N:0:O:3	.	0,60,8,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	7034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:89:N:0:O:1	.	0,62,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	7518	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:121:G:0:T:3:N:0:O:3	.	3,56,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:97:N:0:O:2	.	0,55,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:0:G:3:T:0:N:0:O:0	.	3,28,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8209	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:121:N:0:O:3	.	3,72,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	2,28,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:45:C:0:G:1:T:0:N:0:O:1	.	1,7,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,61,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:23:N:0:O:1	.	1,24,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:103:N:0:O:1	.	2,56,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8850	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:94:N:0:O:6	.	0,70,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,14,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:8:C:0:G:0:T:88:N:0:O:9	.	6,49,2,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:5:C:0:G:95:T:0:N:0:O:0	.	5,37,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9430	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:110:G:0:T:4:N:0:O:2	.	1,68,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	9471	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,35,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:0:C:133:G:0:T:5:N:0:O:4	.	1,125,4,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:76:G:0:T:3:N:0:O:27	.	2,94,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:2:G:0:T:51:N:0:O:0	.	2,50,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9795	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:0:T:2:N:0:O:0	.	0,64,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,21,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:90:G:0:T:3:N:0:O:12	.	3,41,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	1,33,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	10528	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,38,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:118:T:3:N:0:O:0	.	2,58,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	10687	T	C	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:3:G:0:T:133:N:0:O:0	.	0,73,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:82:N:0:O:3	.	0,59,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:0:G:4:T:99:N:0:O:5	.	0,60,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:90:G:0:T:0:N:0:O:8	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:1:T:25:N:0:O:0	.	0,6,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	11133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:94:G:0:T:3:N:0:O:9	.	0,66,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.015957446808510637	.	A:0:C:0:G:130:T:3:N:0:O:55	.	0,88,3,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:71:C:0:G:3:T:0:N:0:O:0	.	0,49,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,19,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:90:G:0:T:0:N:0:O:1	.	0,56,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:72:G:0:T:4:N:0:O:0	.	0,57,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	12793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	0,31,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:91:G:0:T:5:N:0:O:0	.	0,67,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.018633540372670808	.	A:3:C:0:G:0:T:141:N:0:O:17	.	2,90,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13460	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	2,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:0:C:70:G:0:T:4:N:0:O:0	.	0,68,4,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:0:G:91:T:0:N:0:O:10	.	5,40,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:94:G:0:T:0:N:0:O:6	.	2,40,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13739	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:0:G:3:T:0:N:0:O:1	.	2,57,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:35:C:0:G:1:T:0:N:0:O:1	.	1,4,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:0:G:101:T:0:N:0:O:0	.	5,43,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	88	.	20	.	0.9772727272727273	.	A:0:C:1:G:0:T:86:N:0:O:1	.	49,50,37,38	266.449	1223.6	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,64,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14545	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:86:C:0:G:0:T:2:N:0:O:4	.	1,30,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,64,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14760	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	1,68,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:86:G:0:T:2:N:0:O:6	.	0,72,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:89:C:0:G:3:T:0:N:0:O:0	.	3,48,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:110:T:0:N:0:O:1	.	3,51,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:0:G:86:T:0:N:0:O:2	.	4,31,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:0:C:4:G:0:T:69:N:0:O:1	.	0,66,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:82:G:0:T:2:N:0:O:2	.	1,71,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	0,48,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15673	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:0:G:3:T:123:N:0:O:1	.	2,72,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15717	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:3:T:102:N:0:O:8	.	0,76,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15890	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	2,33,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.08928571428571429	.	A:0:C:51:G:0:T:5:N:0:O:0	.	0,32,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:87:G:0:T:3:N:0:O:0	.	0,61,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	16262	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:2:G:0:T:0:N:0:O:1	.	0,56,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:0:T:3:N:0:O:0	.	3,43,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16424	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:74:N:0:O:3	.	0,52,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16432	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:2:C:0:G:56:T:0:N:0:O:3	.	1,43,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.03278688524590164	.	A:0:C:0:G:115:T:4:N:0:O:3	.	4,62,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16535	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:108:T:0:N:0:O:1	.	0,57,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:80:T:0:N:0:O:3	.	3,17,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:3:T:104:N:0:O:2	.	0,73,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:0:G:116:T:1:N:0:O:29	.	0,87,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:80:C:2:G:0:T:0:N:0:O:1	.	2,41,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.025	.	A:152:C:0:G:4:T:1:N:0:O:3	.	4,35,0,125	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.0718562874251497	.	A:12:C:0:G:153:T:0:N:0:O:2	.	12,39,0,128	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,68,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.08	.	A:8:C:0:G:92:T:0:N:0:O:0	.	8,38,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:86:G:0:T:3:N:0:O:1	.	0,47,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.05970149253731343	.	A:0:C:63:G:0:T:4:N:0:O:0	.	1,42,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:85:C:0:G:1:T:3:N:0:O:7	.	0,40,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.07894736842105263	.	A:9:C:0:G:104:T:0:N:0:O:1	.	0,67,9,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:4:C:0:G:194:T:0:N:0:O:2	.	4,84,0,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:142:G:0:T:3:N:0:O:1	.	0,90,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:3:T:95:N:0:O:0	.	2,31,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:3:C:0:G:140:T:0:N:0:O:5	.	3,52,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:3:C:0:G:58:T:0:N:0:O:0	.	3,15,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:29:C:0:G:0:T:1:N:0:O:4	.	0,17,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18915	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,68,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	18947	T	C	T	16	ignore low frequency variant	Pass	False	False	True	267	.	20	.	0.026217228464419477	.	A:0:C:7:G:0:T:246:N:0:O:14	.	0,144,7,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:122:T:0:N:0:O:1	.	3,15,0,111	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	1,35,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:0:C:64:G:0:T:4:N:0:O:0	.	0,55,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	19525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.06504065040650407	.	A:8:C:0:G:115:T:0:N:0:O:0	.	4,55,4,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:4:C:0:G:0:T:123:N:0:O:30	.	0,65,4,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:93:C:0:G:0:T:4:N:0:O:2	.	0,56,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:0:G:3:T:77:N:0:O:1	.	0,36,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:0:G:3:T:95:N:0:O:1	.	3,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:119:C:0:G:3:T:0:N:0:O:1	.	3,66,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	20713	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:96:C:0:G:2:T:1:N:0:O:1	.	2,21,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:201:C:0:G:5:T:0:N:0:O:1	.	5,65,0,142	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:90:C:0:G:4:T:0:N:0:O:5	.	4,27,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.07017543859649122	.	A:0:C:0:G:4:T:53:N:0:O:0	.	4,8,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.11235955056179775	.	A:0:C:0:G:75:T:10:N:0:O:4	.	0,67,10,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21217	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:81:N:0:O:3	.	0,58,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:102:G:0:T:3:N:0:O:1	.	0,66,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.015625	.	A:1:C:0:G:0:T:40:N:0:O:23	.	1,47,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:80:T:0:N:0:O:2	.	2,15,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.01694915254237288	.	A:0:C:0:G:134:T:3:N:0:O:40	.	3,106,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:0:G:3:T:86:N:0:O:0	.	3,35,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:2:G:0:T:0:N:0:O:0	.	2,45,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:0:G:108:T:0:N:0:O:6	.	4,47,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:124:C:0:G:3:T:0:N:0:O:1	.	2,51,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	22121	A	C	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:121:C:3:G:0:T:0:N:0:O:1	.	2,81,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	22212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:106:G:1:T:4:N:0:O:0	.	4,68,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.056451612903225805	.	A:0:C:0:G:7:T:117:N:0:O:0	.	7,46,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,60,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	23393	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:108:G:0:T:3:N:0:O:5	.	1,67,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.917910447761194	.	A:1:C:0:G:123:T:0:N:0:O:10	.	63,74,60,60	210.0	1595.4	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	23578	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:97:N:0:O:3	.	0,67,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	23835	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.01680672268907563	.	A:2:C:0:G:94:T:0:N:0:O:23	.	0,56,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	23836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:1:C:1:G:2:T:72:N:0:O:0	.	0,20,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.13	.	A:0:C:85:G:0:T:13:N:0:O:2	.	0,80,13,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.06666666666666667	.	A:140:C:0:G:0:T:10:N:0:O:0	.	8,82,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.1038961038961039	.	A:8:C:0:G:0:T:69:N:0:O:0	.	7,27,1,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:45:C:0:G:1:T:0:N:0:O:10	.	0,43,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:58:G:0:T:2:N:0:O:9	.	0,60,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:0:G:3:T:0:N:0:O:0	.	3,38,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	24571	T	C	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:0:C:4:G:0:T:148:N:0:O:0	.	0,81,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:83:T:1:N:0:O:0	.	0,50,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:1:G:2:T:84:N:0:O:3	.	0,54,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:3:G:0:T:74:N:0:O:1	.	0,54,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	0,0,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:83:C:0:G:3:T:0:N:0:O:10	.	3,27,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:95:N:0:O:1	.	2,35,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	116	.	20	.	1.0	.	A:0:C:0:G:0:T:116:N:0:O:0	.	54,54,62,62	420.0	1905.0	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:88:G:0:T:0:N:0:O:8	.	4,53,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:79:G:0:T:2:N:0:O:2	.	1,43,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:4:C:77:G:0:T:0:N:0:O:48	.	1,42,3,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:89:G:0:T:3:N:0:O:3	.	1,61,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:74:C:0:G:3:T:0:N:0:O:1	.	3,19,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	2,48,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:78:T:0:N:0:O:1	.	2,8,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.04205607476635514	.	A:9:C:0:G:0:T:205:N:0:O:0	.	9,98,0,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:0:C:165:G:0:T:4:N:0:O:0	.	0,134,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26607	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:78:G:0:T:2:N:0:O:7	.	0,42,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:80:C:0:G:0:T:3:N:0:O:6	.	3,20,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:71:T:0:N:0:O:0	.	3,9,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:88:G:0:T:4:N:0:O:0	.	0,67,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:88:G:0:T:4:N:0:O:1	.	0,63,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:1:G:3:T:100:N:0:O:5	.	0,59,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:90:C:0:G:1:T:3:N:0:O:1	.	1,58,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:81:C:0:G:2:T:0:N:0:O:8	.	2,36,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	27074	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,47,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:82:C:0:G:3:T:0:N:0:O:0	.	3,20,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,12,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	0,61,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	27486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.024630541871921183	.	A:197:C:0:G:0:T:5:N:0:O:1	.	1,75,4,128	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:104:G:0:T:0:N:0:O:1	.	3,58,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.022988505747126436	.	A:130:C:0:G:0:T:4:N:0:O:40	.	3,100,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28167	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:104:T:0:N:0:O:0	.	0,66,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:0:T:72:N:0:O:2	.	0,33,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	1,55,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28400	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:1:C:80:G:0:T:2:N:0:O:9	.	1,53,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28508	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:105:C:0:G:4:T:0:N:0:O:0	.	4,40,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28678	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:85:N:0:O:2	.	0,58,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	0,54,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:78:G:0:T:2:N:0:O:1	.	0,52,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:84:T:0:N:0:O:3	.	0,30,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:0:G:87:T:0:N:0:O:1	.	4,13,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	28923	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:98:G:0:T:3:N:0:O:0	.	0,61,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.031446540880503145	.	A:0:C:152:G:0:T:5:N:0:O:2	.	0,143,5,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:102:G:0:T:3:N:0:O:4	.	2,49,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:89:C:0:G:4:T:0:N:0:O:1	.	2,39,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	29378	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	0,45,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:86:T:0:N:0:O:0	.	3,14,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	29703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,65,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00116	artic-pipeline	NB02	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	300	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00116	artic-pipeline	NB02	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	65	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,14,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	95	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,6,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	104	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:22:N:0:O:1	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	14	.	20	.	0.9285714285714286	.	A:0:C:0:G:0:T:13:N:0:O:1	.	6,7,7,7	280.0	1304.9	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:122:C:0:G:5:T:0:N:0:O:2	.	5,38,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	674	G	A	G	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.027906976744186046	.	A:6:C:0:G:208:T:0:N:0:O:1	.	6,72,0,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	688	G	A	G	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.029914529914529916	.	A:7:C:0:G:224:T:0:N:0:O:3	.	7,105,0,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	0,71,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	942	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,30,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:77:T:0:N:0:O:1	.	2,10,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	133	.	20	.	1.0	.	A:0:C:0:G:0:T:133:N:0:O:0	.	71,71,62,62	210.0	1296.7	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	1185	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:118:G:0:T:3:N:0:O:0	.	0,67,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1280	G	A	G	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.024242424242424242	.	A:4:C:0:G:155:T:0:N:0:O:6	.	4,91,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:99:G:0:T:3:N:0:O:2	.	0,64,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	1,51,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1534	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	0,66,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:69:G:0:T:2:N:0:O:1	.	2,15,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:96:G:1:T:1:N:0:O:22	.	0,73,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	0,1,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:2:C:0:G:92:T:3:N:0:O:1	.	0,58,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:99:N:0:O:6	.	0,61,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,51,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:39:C:0:G:1:T:0:N:0:O:1	.	0,2,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	1917	C	T	T	17	accept high frequency variant	Pass	False	True	True	257	.	20	.	0.9922178988326849	.	A:0:C:0:G:0:T:255:N:0:O:2	.	144,146,111,111	339.237	1767.2	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:77:T:0:N:0:O:2	.	4,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:82:T:0:N:0:O:3	.	0,36,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	2501	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:2:T:0:N:0:O:1	.	2,23,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:68:T:0:N:0:O:1	.	1,19,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:135:C:3:G:0:T:0:N:0:O:1	.	3,74,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	2850	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:3:G:0:T:132:N:0:O:0	.	0,78,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.7142857142857143	.	A:0:C:0:G:0:T:90:N:0:O:36	.	49,85,41,41	403.422	1442.2	.	.	.	.	mixed position	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:0:G:72:T:3:N:0:O:8	.	0,51,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	2,10,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:0:G:2:T:79:N:0:O:0	.	2,12,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3298	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:2:G:0:T:0:N:0:O:0	.	0,57,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,58,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	3410	G	C	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:40:T:0:N:0:O:3	.	1,15,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:69:G:0:T:2:N:0:O:3	.	1,43,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	3,35,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:87:G:0:T:4:N:0:O:0	.	0,72,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:0:G:75:T:2:N:0:O:3	.	1,43,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3884	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	2,30,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:75:G:0:T:3:N:0:O:0	.	0,67,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	3939	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:85:T:0:N:0:O:13	.	2,16,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:110:N:0:O:1	.	0,67,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.01932367149758454	.	A:4:C:0:G:193:T:0:N:0:O:10	.	3,54,1,153	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:94:C:0:G:0:T:2:N:0:O:6	.	0,55,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:3:T:110:N:0:O:0	.	0,62,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.01910828025477707	.	A:3:C:0:G:0:T:141:N:0:O:13	.	2,75,1,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:115:C:3:G:0:T:0:N:0:O:6	.	0,64,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:0:T:2:N:0:O:0	.	2,15,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5259	C	A	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:78:G:0:T:0:N:0:O:0	.	0,38,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,43,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5534	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:112:G:0:T:3:N:0:O:0	.	0,61,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5553	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:92:C:0:G:2:T:1:N:0:O:3	.	1,47,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.01951219512195122	.	A:0:C:196:G:0:T:4:N:0:O:5	.	0,118,4,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:0:C:62:G:0:T:3:N:0:O:1	.	0,57,3,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5739	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,44,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5741	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:105:T:3:N:0:O:1	.	3,42,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,59,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	5866	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:96:G:0:T:2:N:0:O:5	.	1,65,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.09523809523809523	.	A:0:C:76:G:0:T:8:N:0:O:0	.	0,61,8,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	6148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:90:N:0:O:9	.	0,75,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:92:G:0:T:3:N:0:O:3	.	0,70,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:85:G:0:T:2:N:0:O:3	.	0,64,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.05555555555555555	.	A:181:C:0:G:11:T:2:N:0:O:4	.	10,89,1,109	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.03015075376884422	.	A:0:C:183:G:0:T:6:N:0:O:10	.	0,132,6,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,34,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:72:C:0:G:0:T:4:N:0:O:4	.	0,56,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:79:G:0:T:2:N:0:O:25	.	0,85,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	7598	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:88:N:0:O:1	.	0,50,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	7674	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:86:G:0:T:0:N:0:O:11	.	0,68,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	7717	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:3:G:0:T:92:N:0:O:0	.	0,60,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.07291666666666667	.	A:89:C:0:G:7:T:0:N:0:O:0	.	7,29,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:97:C:4:G:0:T:0:N:0:O:1	.	0,59,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:81:N:0:O:1	.	0,62,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	8590	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:0:G:2:T:0:N:0:O:0	.	2,38,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:0:C:5:G:0:T:104:N:0:O:0	.	0,64,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	8847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:0:G:0:T:2:N:0:O:0	.	0,35,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.06363636363636363	.	A:7:C:0:G:0:T:97:N:0:O:6	.	7,41,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:111:T:0:N:0:O:0	.	4,44,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9141	G	C	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:136:T:0:N:0:O:6	.	0,68,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:0:C:152:G:0:T:4:N:0:O:1	.	0,125,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	1,39,0,0	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:83:G:0:T:2:N:0:O:11	.	0,67,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9741	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	0,62,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9891	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:118:G:0:T:3:N:0:O:3	.	1,65,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.06153846153846154	.	A:4:C:0:G:61:T:0:N:0:O:0	.	4,15,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:0:C:70:G:0:T:4:N:0:O:9	.	4,24,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:82:T:1:N:0:O:0	.	3,21,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.025380710659898477	.	A:5:C:0:G:191:T:1:N:0:O:0	.	5,62,0,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	2,28,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10673	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:0:T:98:N:0:O:4	.	1,50,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:108:T:3:N:0:O:1	.	3,61,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10794	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:123:N:0:O:0	.	0,71,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:3:T:113:N:0:O:5	.	0,63,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:89:G:0:T:0:N:0:O:7	.	4,50,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	10995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:69:C:0:G:0:T:2:N:0:O:2	.	0,24,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	11075	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:1:G:0:T:34:N:0:O:0	.	1,32,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:0:G:1:T:44:N:0:O:8	.	1,27,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	11083	G	T	G	16	ignore low frequency variant	Pass	True	False	True	107	.	20	.	0.09345794392523364	.	A:2:C:0:G:88:T:10:N:0:O:7	.	4,56,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:97:G:0:T:4:N:0:O:1	.	0,64,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	11798	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,66,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.020512820512820513	.	A:1:C:0:G:132:T:4:N:0:O:58	.	0,85,4,110	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:76:C:0:G:4:T:0:N:0:O:1	.	0,55,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:77:G:0:T:2:N:0:O:17	.	0,80,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.023696682464454975	.	A:0:C:206:G:0:T:5:N:0:O:0	.	0,126,5,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12270	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:88:C:0:G:2:T:0:N:0:O:1	.	1,51,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:120:G:0:T:3:N:0:O:0	.	3,53,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:117:G:0:T:3:N:0:O:5	.	3,56,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:4:C:0:G:194:T:0:N:0:O:0	.	4,78,0,120	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12488	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:91:G:0:T:0:N:0:O:2	.	0,55,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.060240963855421686	.	A:0:C:76:G:0:T:5:N:0:O:2	.	0,66,5,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12934	T	A	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:0:T:112:N:0:O:8	.	3,59,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:98:C:0:G:3:T:0:N:0:O:2	.	3,43,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:89:G:0:T:3:N:0:O:0	.	0,63,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	250	.	20	.	0.02	.	A:0:C:5:G:0:T:245:N:0:O:0	.	1,133,4,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:108:T:0:N:0:O:1	.	3,59,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13124	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:44:T:1:N:0:O:0	.	1,23,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,42,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:0:C:73:G:0:T:4:N:0:O:1	.	0,70,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:80:T:0:N:0:O:4	.	3,24,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13593	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,53,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:0:G:3:T:0:N:0:O:0	.	3,38,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	13724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.024844720496894408	.	A:0:C:153:G:0:T:4:N:0:O:4	.	0,88,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14166	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:121:T:0:N:0:O:4	.	3,61,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14357	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,45,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	80	.	20	.	1.0	.	A:0:C:0:G:0:T:80:N:0:O:0	.	46,46,34,34	313.349	1193.8	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	14490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,28,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14717	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:70:C:0:G:0:T:2:N:0:O:3	.	0,32,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14901	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:4:G:0:T:117:N:0:O:0	.	0,63,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:112:N:0:O:2	.	0,69,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:97:C:0:G:4:T:0:N:0:O:1	.	4,45,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:111:T:0:N:0:O:0	.	4,45,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	15272	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:115:C:3:G:0:T:0:N:0:O:6	.	1,66,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:94:T:2:N:0:O:1	.	0,60,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.13513513513513514	.	A:1:C:31:G:0:T:5:N:0:O:0	.	0,22,5,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,62,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:93:N:0:O:4	.	1,39,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.05309734513274336	.	A:0:C:0:G:105:T:6:N:0:O:2	.	3,50,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:0:G:82:T:0:N:0:O:6	.	4,23,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:100:C:1:G:3:T:0:N:0:O:3	.	3,43,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	16768	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:97:G:0:T:2:N:0:O:8	.	0,70,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	16837	G	T	G	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.017241379310344827	.	A:2:C:0:G:127:T:3:N:0:O:42	.	2,89,1,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:76:C:0:G:3:T:0:N:0:O:1	.	2,43,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	3,32,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.021052631578947368	.	A:186:C:0:G:4:T:0:N:0:O:0	.	3,61,1,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17133	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:88:G:0:T:0:N:0:O:1	.	0,67,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:71:C:0:G:5:T:0:N:0:O:2	.	5,14,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:5:C:0:G:0:T:71:N:0:O:2	.	5,17,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	2,38,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0875	.	A:0:C:70:G:0:T:7:N:0:O:3	.	0,53,7,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,20,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,52,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17582	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:90:N:0:O:1	.	2,62,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.027472527472527472	.	A:0:C:173:G:0:T:5:N:0:O:4	.	0,96,5,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:73:G:0:T:2:N:0:O:3	.	0,47,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:94:C:0:G:0:T:2:N:0:O:9	.	0,47,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:5:C:0:G:105:T:0:N:0:O:2	.	0,64,5,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,59,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:85:C:0:G:2:T:0:N:0:O:6	.	2,30,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:0:G:68:T:0:N:0:O:0	.	3,23,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.027649769585253458	.	A:6:C:0:G:209:T:0:N:0:O:2	.	6,91,0,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18245	A	T	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:125:C:0:G:0:T:3:N:0:O:17	.	3,74,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:0:G:2:T:78:N:0:O:1	.	2,31,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18513	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:90:N:0:O:2	.	0,50,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18521	T	A	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:0:T:97:N:0:O:0	.	0,51,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:72:C:0:G:3:T:0:N:0:O:1	.	3,25,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:79:T:0:N:0:O:2	.	3,28,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	18994	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:89:T:0:N:0:O:6	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	19049	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:119:G:0:T:4:N:0:O:2	.	0,67,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:96:T:0:N:0:O:1	.	4,22,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	2,28,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:0:C:58:G:0:T:4:N:0:O:0	.	0,49,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.017341040462427744	.	A:3:C:0:G:0:T:135:N:0:O:35	.	1,77,2,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:0:T:3:N:0:O:0	.	1,66,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:98:G:0:T:3:N:0:O:0	.	0,56,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	20140	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,47,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	20181	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:98:C:0:G:4:T:0:N:0:O:1	.	4,37,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	20351	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,53,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	20931	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:1:C:0:G:86:T:2:N:0:O:1	.	1,38,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0851063829787234	.	A:0:C:0:G:4:T:43:N:0:O:0	.	4,11,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:0:C:0:G:77:T:7:N:0:O:8	.	1,65,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:72:T:0:N:0:O:1	.	0,57,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,54,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:2:C:0:G:0:T:29:N:0:O:22	.	2,43,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:4:C:0:G:81:T:0:N:0:O:1	.	4,17,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:111:C:0:G:0:T:4:N:0:O:0	.	4,48,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:82:G:0:T:2:N:0:O:5	.	1,24,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,70,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.04132231404958678	.	A:5:C:0:G:105:T:0:N:0:O:11	.	5,53,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	1,43,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.045454545454545456	.	A:125:C:0:G:0:T:6:N:0:O:1	.	5,74,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:0:G:2:T:80:N:0:O:0	.	2,23,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22301	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	2,50,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22355	T	A	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:1:C:0:G:0:T:19:N:0:O:0	.	0,11,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22356	A	T	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:0:T:1:N:0:O:0	.	0,10,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:27:G:0:T:1:N:0:O:1	.	0,15,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22431	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,8,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22465	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:19:N:0:O:1	.	0,11,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22469	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:21:N:0:O:0	.	0,11,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22494	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:22:T:0:N:0:O:0	.	0,12,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22499	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:23:N:0:O:0	.	0,11,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:79:N:0:O:0	.	1,75,1,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,28,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	22730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:118:G:0:T:3:N:0:O:1	.	0,71,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23086	C	T	T	17	accept high frequency variant	Pass	False	True	True	174	.	20	.	0.9827586206896551	.	A:0:C:0:G:0:T:171:N:0:O:3	.	85,88,86,86	206.227	1803.6	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:123:G:0:T:3:N:0:O:19	.	0,118,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23148	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:135:C:0:G:3:T:0:N:0:O:1	.	0,53,3,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.946969696969697	.	A:0:C:0:G:125:T:0:N:0:O:7	.	61,68,64,64	70.0	1645.3	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:80:T:0:N:0:O:7	.	2,19,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23562	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	2,21,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:0:C:79:G:0:T:5:N:0:O:1	.	0,69,5,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23912	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:97:G:0:T:0:N:0:O:4	.	2,43,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:128:C:0:G:0:T:4:N:0:O:0	.	4,66,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:4:C:0:G:0:T:68:N:0:O:0	.	4,23,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:76:T:0:N:0:O:0	.	4,13,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,61,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:81:T:0:N:0:O:3	.	2,14,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:88:N:0:O:0	.	3,24,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24309	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	0,66,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24378	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:92:G:0:T:2:N:0:O:5	.	1,70,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:83:G:0:T:1:N:0:O:3	.	4,46,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:105:C:0:G:0:T:3:N:0:O:8	.	3,73,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:83:C:3:G:0:T:0:N:0:O:0	.	3,41,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	0,2,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,35,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:80:T:0:N:0:O:1	.	0,55,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:1:C:0:G:2:T:76:N:0:O:1	.	0,56,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25424	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:101:T:0:N:0:O:1	.	0,63,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25432	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:118:C:0:G:3:T:0:N:0:O:0	.	3,53,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25555	G	T	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:91:T:3:N:0:O:15	.	3,58,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:0:G:5:T:91:N:0:O:3	.	5,47,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	119	.	20	.	1.0	.	A:0:C:0:G:0:T:119:N:0:O:0	.	57,57,62,62	280.0	1878.3	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:2:C:95:G:0:T:0:N:0:O:11	.	2,62,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:91:G:0:T:2:N:0:O:5	.	1,47,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:75:G:0:T:0:N:0:O:42	.	4,44,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.09615384615384616	.	A:47:C:5:G:0:T:0:N:0:O:0	.	2,30,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:86:G:1:T:2:N:0:O:1	.	0,48,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:0:G:0:T:2:N:0:O:0	.	0,45,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,22,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26176	C	A	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:103:G:0:T:0:N:0:O:1	.	1,40,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:79:G:0:T:3:N:0:O:34	.	0,98,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,24,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:93:C:0:G:0:T:3:N:0:O:3	.	3,26,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:4:C:0:G:82:T:0:N:0:O:1	.	4,13,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,68,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,62,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	3,43,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.01910828025477707	.	A:0:C:147:G:0:T:3:N:0:O:7	.	0,146,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	26945	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:87:C:0:G:2:T:0:N:0:O:12	.	2,34,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	27002	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	2,67,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:81:C:1:G:2:T:0:N:0:O:2	.	2,20,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:5:C:0:G:71:T:0:N:0:O:0	.	5,18,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.07042253521126761	.	A:0:C:66:G:0:T:5:N:0:O:0	.	0,57,5,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:88:C:0:G:3:T:0:N:0:O:2	.	3,39,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	27953	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:0:T:92:N:0:O:2	.	0,54,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,69,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:80:C:0:G:0:T:3:N:0:O:5	.	3,27,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:0:C:48:G:0:T:2:N:0:O:6	.	1,24,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28590	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:116:G:0:T:0:N:0:O:7	.	3,60,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28678	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:84:N:0:O:3	.	0,60,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.018292682926829267	.	A:3:C:110:G:0:T:0:N:0:O:51	.	3,84,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:74:G:0:T:3:N:0:O:2	.	0,46,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:71:T:0:N:0:O:3	.	0,29,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28889	T	A	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:0:T:98:N:0:O:0	.	2,59,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,17,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	28928	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:98:G:0:T:2:N:0:O:4	.	0,68,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	29047	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:74:N:0:O:1	.	0,65,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:101:G:0:T:0:N:0:O:7	.	4,60,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:92:T:0:N:0:O:1	.	2,17,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:80:T:0:N:0:O:10	.	3,16,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.05084745762711865	.	A:0:C:3:G:53:T:0:N:0:O:3	.	3,17,0,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00117	artic-pipeline	NB04	MN908947.3	29779	G	T	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:44:T:1:N:0:O:1	.	0,20,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	301	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00117	artic-pipeline	NB04	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	172	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:28:N:0:O:1	.	0,9,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	182	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,11,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:65:T:0:N:0:O:1	.	3,4,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	82	.	20	.	0.975609756097561	.	A:0:C:0:G:0:T:80:N:0:O:2	.	9,11,71,71	490.0	1960.8	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	1002	A	G	A	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:139:C:0:G:4:T:0:N:0:O:1	.	0,66,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:66:T:0:N:0:O:1	.	2,7,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	0.9928571428571429	.	A:0:C:1:G:0:T:139:N:0:O:0	.	73,73,66,67	210.0	1590.3	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:50:G:0:T:2:N:0:O:3	.	1,42,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:68:G:0:T:2:N:0:O:4	.	0,52,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,63,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	1431	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:129:C:0:G:3:T:0:N:0:O:0	.	1,63,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:1:C:81:G:2:T:1:N:0:O:3	.	2,38,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:5:G:0:T:97:N:0:O:4	.	0,56,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	1,1,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,46,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.07777777777777778	.	A:7:C:0:G:81:T:0:N:0:O:2	.	7,27,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:126:C:3:G:0:T:0:N:0:O:0	.	3,56,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:84:T:0:N:0:O:3	.	0,28,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	2625	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:75:G:0:T:2:N:0:O:4	.	1,67,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,64,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	2903	A	C	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:110:C:5:G:0:T:0:N:0:O:0	.	5,49,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	2906	A	T	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:75:C:0:G:0:T:2:N:0:O:0	.	1,33,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	118	.	20	.	0.7542372881355932	.	A:0:C:0:G:0:T:89:N:0:O:29	.	46,75,43,43	60.786	1509.2	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:70:T:2:N:0:O:16	.	0,72,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:105:N:0:O:0	.	0,65,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:0:T:2:N:0:O:3	.	0,54,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	0,1,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	3463	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,37,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,66,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:0:G:97:T:2:N:0:O:8	.	1,60,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:88:T:0:N:0:O:1	.	0,55,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	4321	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:92:G:0:T:0:N:0:O:11	.	2,74,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.05188679245283019	.	A:0:C:0:G:187:T:11:N:0:O:14	.	0,166,11,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	4371	G	A	G	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.02072538860103627	.	A:4:C:0:G:189:T:0:N:0:O:0	.	0,152,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	4427	T	G	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.006944444444444444	.	A:0:C:0:G:1:T:141:N:0:O:2	.	0,76,1,68	25.375	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:109:C:0:G:0:T:3:N:0:O:6	.	0,65,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	5567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.057971014492753624	.	A:0:C:65:G:0:T:4:N:0:O:0	.	0,62,4,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:5:G:0:T:75:N:0:O:1	.	0,57,5,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.08536585365853659	.	A:0:C:75:G:0:T:7:N:0:O:0	.	0,62,7,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6115	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:89:N:0:O:2	.	0,57,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	6148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:86:N:0:O:15	.	0,80,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:1:C:83:G:0:T:3:N:0:O:1	.	0,63,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6626	A	C	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:118:C:3:G:1:T:0:N:0:O:3	.	1,57,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:91:G:0:T:2:N:0:O:4	.	2,47,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:96:G:0:T:2:N:0:O:3	.	0,74,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.02242152466367713	.	A:211:C:1:G:5:T:0:N:0:O:6	.	5,96,0,127	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.01932367149758454	.	A:0:C:190:G:0:T:4:N:0:O:13	.	0,136,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	6869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,37,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.1411764705882353	.	A:71:C:0:G:0:T:12:N:0:O:2	.	0,61,12,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,28,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:92:T:0:N:0:O:1	.	4,15,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,16,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:0:T:2:N:0:O:0	.	2,38,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:3:G:0:T:86:N:0:O:5	.	0,54,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,66,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	8548	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,40,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,58,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	8628	A	G	A	16	ignore low frequency variant	Pass	False	False	True	223	.	20	.	0.03587443946188341	.	A:210:C:0:G:8:T:1:N:0:O:4	.	8,86,0,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	8849	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:77:T:0:N:0:O:1	.	2,56,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:5:C:0:G:66:T:0:N:0:O:2	.	5,6,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:112:T:1:N:0:O:0	.	3,44,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9202	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:3:T:107:N:0:O:5	.	0,55,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:105:G:0:T:3:N:0:O:1	.	0,69,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,57,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	9344	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:75:G:0:T:3:N:0:O:4	.	0,36,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9585	T	A	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:0:T:104:N:0:O:0	.	4,41,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9629	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	1,37,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9794	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:2:C:0:G:97:T:1:N:0:O:15	.	1,54,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:2:G:0:T:53:N:0:O:0	.	0,50,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:0:N:0:O:1	.	2,22,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:0:C:92:G:0:T:2:N:0:O:19	.	2,43,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	3,23,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:101:C:0:G:5:T:0:N:0:O:0	.	5,42,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:3:G:0:T:74:N:0:O:7	.	0,63,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	10858	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:0:G:0:T:2:N:0:O:0	.	1,35,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:3:T:109:N:0:O:6	.	0,58,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	11495	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:4:G:0:T:116:N:0:O:0	.	0,65,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	11513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,55,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:123:C:0:G:0:T:3:N:0:O:1	.	3,59,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	11776	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:105:G:0:T:3:N:0:O:0	.	0,68,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.02702702702702703	.	A:0:C:0:G:127:T:5:N:0:O:53	.	0,83,5,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.08974358974358974	.	A:71:C:0:G:7:T:0:N:0:O:0	.	0,55,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.05128205128205128	.	A:8:C:0:G:141:T:0:N:0:O:7	.	7,41,1,115	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	12333	C	G	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.022857142857142857	.	A:0:C:147:G:4:T:0:N:0:O:24	.	2,97,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:133:C:3:G:1:T:0:N:0:O:0	.	2,77,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:1:G:102:T:0:N:0:O:4	.	4,42,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0759493670886076	.	A:0:C:71:G:0:T:6:N:0:O:2	.	0,59,6,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:101:T:0:N:0:O:0	.	4,45,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:91:C:0:G:4:T:0:N:0:O:4	.	4,45,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,75,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:4:C:0:G:116:T:0:N:0:O:0	.	4,57,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,62,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	2,50,1,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02666666666666667	.	A:4:C:0:G:0:T:133:N:0:O:13	.	4,88,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13378	C	T	C	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.043478260869565216	.	A:0:C:198:G:0:T:9:N:0:O:0	.	0,158,9,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	13446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:101:G:0:T:3:N:0:O:0	.	1,60,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.07042253521126761	.	A:0:C:65:G:0:T:5:N:0:O:1	.	0,59,5,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.07317073170731707	.	A:6:C:0:G:71:T:0:N:0:O:5	.	6,17,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:92:G:0:T:0:N:0:O:2	.	2,34,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:88:G:0:T:2:N:0:O:3	.	0,72,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	92	.	20	.	1.0	.	A:0:C:0:G:0:T:92:N:0:O:0	.	54,54,38,38	337.711	1157.6	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,62,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	14717	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:71:C:0:G:1:T:2:N:0:O:2	.	0,30,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:80:G:0:T:2:N:0:O:4	.	0,70,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:103:C:0:G:3:T:0:N:0:O:6	.	3,50,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	14935	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:112:T:0:N:0:O:1	.	3,50,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.08421052631578947	.	A:8:C:0:G:84:T:0:N:0:O:3	.	8,31,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,26,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	15359	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	2,38,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	0,64,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.10714285714285714	.	A:0:C:50:G:0:T:6:N:0:O:0	.	0,30,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,58,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	16427	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:99:C:0:G:3:T:0:N:0:O:0	.	1,41,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	16691	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,54,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:2:T:0:N:0:O:0	.	1,47,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	16859	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:106:G:0:T:3:N:0:O:2	.	1,54,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:76:C:4:G:0:T:0:N:0:O:1	.	4,43,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:0:G:1:T:0:N:0:O:0	.	1,12,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:171:C:0:G:4:T:0:N:0:O:10	.	4,47,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.05084745762711865	.	A:9:C:0:G:165:T:0:N:0:O:3	.	9,36,0,141	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:0:T:77:N:0:O:1	.	4,15,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:98:C:0:G:4:T:0:N:0:O:0	.	4,41,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:106:G:0:T:7:N:0:O:2	.	0,81,7,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.06164383561643835	.	A:9:C:0:G:137:T:0:N:0:O:0	.	9,45,0,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.033783783783783786	.	A:0:C:142:G:0:T:5:N:0:O:1	.	0,79,5,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.030534351145038167	.	A:0:C:121:G:0:T:4:N:0:O:6	.	0,62,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.0847457627118644	.	A:0:C:53:G:0:T:5:N:0:O:1	.	0,40,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:83:C:0:G:0:T:4:N:0:O:9	.	0,39,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.12612612612612611	.	A:14:C:0:G:96:T:0:N:0:O:1	.	0,64,14,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,58,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:86:C:0:G:2:T:0:N:0:O:3	.	2,24,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:71:T:0:N:0:O:1	.	2,19,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	17989	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:119:N:0:O:0	.	0,61,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:0:G:128:T:3:N:0:O:4	.	0,81,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	18673	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:115:C:0:G:3:T:0:N:0:O:1	.	3,54,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:87:C:0:G:2:T:0:N:0:O:0	.	2,31,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:3:T:106:N:0:O:0	.	3,52,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:4:C:0:G:99:T:0:N:0:O:1	.	4,22,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	19476	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:0:G:2:T:0:N:0:O:3	.	0,37,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:0:C:64:G:0:T:4:N:0:O:0	.	0,54,4,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:0:G:95:T:1:N:0:O:0	.	4,33,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.016853932584269662	.	A:3:C:0:G:0:T:139:N:0:O:36	.	0,75,3,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:98:N:0:O:2	.	0,59,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	19967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:100:T:0:N:0:O:0	.	2,43,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:82:G:0:T:2:N:0:O:1	.	0,40,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	20355	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:98:C:0:G:2:T:0:N:0:O:3	.	2,31,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:86:G:0:T:3:N:0:O:1	.	0,54,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:95:T:0:N:0:O:0	.	3,34,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:0:G:2:T:43:N:0:O:0	.	2,11,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:0:G:72:T:5:N:0:O:9	.	0,69,5,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:82:T:0:N:0:O:2	.	3,17,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	21569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.017142857142857144	.	A:0:C:0:G:134:T:3:N:0:O:38	.	2,104,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0851063829787234	.	A:0:C:82:G:0:T:8:N:0:O:4	.	7,30,1,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.031055900621118012	.	A:5:C:0:G:155:T:1:N:0:O:0	.	5,79,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.032432432432432434	.	A:0:C:0:G:6:T:179:N:0:O:0	.	6,64,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	312	.	20	.	0.019230769230769232	.	A:0:C:6:G:0:T:286:N:0:O:20	.	0,220,6,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	22438	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:118:C:3:G:0:T:0:N:0:O:3	.	3,54,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.05660377358490566	.	A:49:C:0:G:3:T:0:N:0:O:1	.	0,10,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:3:G:0:T:136:N:0:O:0	.	2,135,1,4	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:4:C:0:G:155:T:0:N:0:O:0	.	4,41,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:129:T:0:N:0:O:2	.	3,31,0,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9044117647058824	.	A:0:C:0:G:123:T:0:N:0:O:13	.	59,72,64,64	210.0	1662.9	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:79:C:0:G:2:T:0:N:0:O:2	.	2,30,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.09574468085106383	.	A:0:C:85:G:0:T:9:N:0:O:0	.	0,75,9,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:113:T:0:N:0:O:0	.	3,63,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24099	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,67,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:81:T:0:N:0:O:6	.	2,22,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:86:T:0:N:0:O:9	.	3,61,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:1:C:135:G:0:T:3:N:0:O:2	.	0,79,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:120:T:0:N:0:O:0	.	3,61,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:109:C:0:G:5:T:0:N:0:O:0	.	5,43,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:110:T:0:N:0:O:1	.	0,69,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:1:C:3:G:0:T:111:N:0:O:0	.	0,68,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	51	.	20	.	0.058823529411764705	.	A:0:C:3:G:0:T:46:N:0:O:2	.	3,38,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	25135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:98:T:0:N:0:O:4	.	2,35,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25162	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:68:G:0:T:2:N:0:O:1	.	0,22,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:2:G:0:T:0:N:0:O:0	.	2,44,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.05042016806722689	.	A:113:C:0:G:0:T:6:N:0:O:0	.	6,48,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25553	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:65:G:0:T:2:N:0:O:5	.	0,24,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:95:N:0:O:0	.	2,38,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	130	.	20	.	0.9923076923076923	.	A:0:C:0:G:0:T:129:N:0:O:1	.	53,54,76,76	350.0	2199.4	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:62:G:0:T:2:N:0:O:5	.	2,55,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25710	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:98:G:0:T:0:N:0:O:1	.	0,57,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:74:T:0:N:0:O:1	.	2,10,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:1:C:83:G:0:T:2:N:0:O:7	.	2,40,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.016260162601626018	.	A:2:C:77:G:0:T:0:N:0:O:44	.	2,28,0,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.14285714285714285	.	A:47:C:8:G:0:T:0:N:0:O:1	.	2,27,6,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25804	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,41,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:77:G:0:T:2:N:0:O:0	.	0,40,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25810	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:97:G:0:T:2:N:0:O:3	.	0,53,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,53,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:81:C:0:G:2:T:0:N:0:O:3	.	2,19,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:73:G:0:T:2:N:0:O:20	.	0,84,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,31,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,52,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:0:C:179:G:0:T:4:N:0:O:1	.	0,150,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:1:C:2:G:0:T:70:N:0:O:1	.	2,33,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26670	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:2:G:0:T:0:N:0:O:3	.	2,67,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:101:C:0:G:0:T:3:N:0:O:5	.	3,24,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,8,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,64,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:87:G:0:T:4:N:0:O:0	.	0,59,4,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:89:G:0:T:0:N:0:O:4	.	3,52,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.018518518518518517	.	A:123:C:1:G:0:T:3:N:0:O:35	.	3,96,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:96:C:0:G:0:T:2:N:0:O:3	.	2,46,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	28508	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:103:C:0:G:4:T:0:N:0:O:0	.	4,41,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	28639	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:75:G:0:T:2:N:0:O:3	.	1,39,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	28673	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:96:T:1:N:0:O:2	.	2,45,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.045454545454545456	.	A:63:C:0:G:3:T:0:N:0:O:0	.	3,6,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	28781	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,22,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:6:C:0:G:80:T:0:N:0:O:1	.	6,16,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.03164556962025317	.	A:0:C:153:G:0:T:5:N:0:O:0	.	0,140,5,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.02727272727272727	.	A:0:C:6:G:0:T:209:N:0:O:5	.	0,134,6,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29055	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:1:G:0:T:0:N:0:O:1	.	0,10,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29056	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:38:C:0:G:1:T:0:N:0:O:1	.	0,4,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:94:N:0:O:0	.	0,55,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29111	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,24,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:106:G:0:T:0:N:0:O:5	.	4,62,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29179	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,33,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:63:C:0:G:2:T:0:N:0:O:0	.	0,5,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.04316546762589928	.	A:128:C:0:G:6:T:0:N:0:O:5	.	6,31,0,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.043209876543209874	.	A:7:C:0:G:132:T:0:N:0:O:23	.	7,45,0,117	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00118	artic-pipeline	NB05	MN908947.3	29440	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:4:C:0:G:176:T:0:N:0:O:0	.	4,74,0,106	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	311	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	10527	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00118	artic-pipeline	NB05	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	154	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	55	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	0,2,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	79	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:32:C:0:G:0:T:1:N:0:O:1	.	0,4,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	193	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:28:G:0:T:1:N:0:O:0	.	0,1,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:28:T:0:N:0:O:0	.	0,2,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	230	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,3,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	31	.	20	.	1.0	.	A:0:C:0:G:0:T:31:N:0:O:0	.	3,3,28,28	70.0	1225.8	.	.	.	.	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	282	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:29:G:0:T:1:N:0:O:3	.	0,4,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	285	G	T	G	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:0:G:34:T:1:N:0:O:1	.	0,6,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	300	C	A	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:28:G:0:T:0:N:0:O:1	.	1,7,0,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	312	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,6,1,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	333	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,7,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	555	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:137:C:0:G:3:T:0:N:0:O:1	.	3,57,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.03875968992248062	.	A:122:C:0:G:5:T:0:N:0:O:2	.	5,38,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	608	C	A	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:3:C:143:G:0:T:0:N:0:O:0	.	0,73,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:81:C:0:G:0:T:2:N:0:O:2	.	2,16,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	835	C	G	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:82:G:3:T:0:N:0:O:3	.	0,67,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:0:C:79:G:2:T:4:N:0:O:1	.	0,50,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:73:G:0:T:3:N:0:O:0	.	0,44,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	1038	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	0,56,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1093	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:57:G:0:T:2:N:0:O:4	.	1,41,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:5:C:0:G:71:T:0:N:0:O:21	.	1,9,4,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:80:C:0:G:3:T:0:N:0:O:1	.	0,36,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:2:C:0:G:65:T:0:N:0:O:3	.	2,10,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:119:G:0:T:3:N:0:O:3	.	0,72,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1510	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:115:N:0:O:0	.	0,75,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1747	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:1:C:0:G:81:T:3:N:0:O:2	.	2,53,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:69:C:0:G:2:T:1:N:0:O:2	.	2,59,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:5:G:0:T:89:N:0:O:5	.	0,50,5,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:109:T:0:N:0:O:0	.	3,50,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.07407407407407407	.	A:8:C:0:G:100:T:0:N:0:O:0	.	8,35,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:122:C:3:G:0:T:0:N:0:O:0	.	3,59,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2406	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:78:C:0:G:2:T:0:N:0:O:20	.	0,19,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	1.0	.	A:0:C:0:G:0:T:117:N:0:O:0	.	59,59,58,58	209.237	1238.9	.	.	.	.	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.028901734104046242	.	A:168:C:5:G:0:T:0:N:0:O:0	.	5,104,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:128:G:0:T:3:N:0:O:5	.	0,128,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2843	T	C	T	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:0:C:4:G:1:T:149:N:0:O:1	.	0,122,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:76:C:3:G:0:T:0:N:0:O:1	.	1,35,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:1:C:107:G:0:T:3:N:0:O:12	.	1,53,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	121	.	20	.	0.6611570247933884	.	A:0:C:0:G:0:T:80:N:0:O:41	.	44,85,36,36	191.846	1505.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	3088	T	G	T	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:0:G:3:T:129:N:0:O:5	.	1,64,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:93:T:2:N:0:O:0	.	0,39,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:134:G:0:T:0:N:0:O:0	.	0,67,3,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:76:N:0:O:0	.	0,60,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:76:T:2:N:0:O:14	.	0,61,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:135:C:0:G:3:T:0:N:0:O:7	.	3,47,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3351	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:0:G:134:T:0:N:0:O:0	.	1,51,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:1:C:92:G:0:T:3:N:0:O:1	.	0,54,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:56:C:1:G:0:T:2:N:0:O:1	.	2,23,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3580	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:0:T:2:N:0:O:1	.	2,56,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:68:T:0:N:0:O:1	.	0,44,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:2:G:0:T:0:N:0:O:0	.	2,34,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.04878048780487805	.	A:0:C:0:G:191:T:10:N:0:O:4	.	0,155,10,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:3:C:0:G:163:T:4:N:0:O:28	.	0,179,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	4523	G	A	A	17	accept high frequency variant	Pass	False	True	True	171	.	20	.	1.0	.	A:171:C:0:G:0:T:0:N:0:O:0	.	77,77,94,94	210.0	939.8	.	.	.	.	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:97:G:0:T:2:N:0:O:6	.	0,73,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:87:G:0:T:3:N:0:O:3	.	0,67,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5128	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:124:C:0:G:0:T:3:N:0:O:6	.	3,67,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5129	C	A	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:120:G:0:T:0:N:0:O:1	.	3,58,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5627	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	2,40,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5656	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:60:G:0:T:2:N:0:O:1	.	0,56,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5741	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:0:G:104:T:3:N:0:O:4	.	2,39,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:3:G:0:T:72:N:0:O:1	.	0,46,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5788	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:0:T:99:N:0:O:10	.	3,51,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:80:T:0:N:0:O:3	.	3,15,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5834	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:90:N:0:O:6	.	0,46,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:82:T:0:N:0:O:12	.	0,21,2,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.06593406593406594	.	A:0:C:85:G:0:T:6:N:0:O:0	.	0,64,6,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	2,58,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	6148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.018518518518518517	.	A:0:C:2:G:1:T:95:N:0:O:10	.	0,77,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	6205	G	A	G	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.02074688796680498	.	A:5:C:0:G:218:T:0:N:0:O:18	.	5,91,0,150	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	6350	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:77:C:0:G:5:T:0:N:0:O:0	.	3,45,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	6632	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:80:T:0:N:0:O:2	.	2,32,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	209	.	20	.	0.023923444976076555	.	A:196:C:0:G:5:T:0:N:0:O:8	.	5,86,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:76:C:0:G:0:T:5:N:0:O:1	.	0,63,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	7278	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	1,31,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	7289	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:0:G:108:T:3:N:0:O:0	.	0,53,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	7350	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.02	.	A:0:C:194:G:0:T:4:N:0:O:2	.	0,143,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:76:G:0:T:2:N:0:O:21	.	0,78,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.01910828025477707	.	A:0:C:0:G:145:T:3:N:0:O:9	.	3,81,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	8382	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,29,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	8485	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:2:C:0:G:0:T:97:N:0:O:8	.	2,60,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,61,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:0:T:82:N:0:O:4	.	4,37,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:78:G:0:T:5:N:0:O:1	.	5,28,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:72:G:0:T:2:N:0:O:25	.	1,93,1,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,43,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	9787	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:92:N:0:O:0	.	0,62,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:71:T:0:N:0:O:1	.	2,20,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:79:G:0:T:2:N:0:O:14	.	2,42,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:79:T:0:N:0:O:0	.	4,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:3:T:0:N:0:O:0	.	3,43,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	10712	C	T	T	12	misc mixed variant	Check	False	True	True	274	.	20	.	0.7335766423357665	.	A:0:C:2:G:0:T:201:N:0:O:71	.	64,137,137,137	55.62	1502.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:104:G:0:T:4:N:0:O:0	.	0,67,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:4:T:99:N:0:O:3	.	0,59,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:100:G:0:T:0:N:0:O:13	.	3,54,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	11109	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	0,64,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	11495	T	C	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:4:G:0:T:115:N:0:O:2	.	0,68,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.08333333333333333	.	A:0:C:86:G:0:T:8:N:0:O:2	.	0,66,8,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	0,53,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:0:G:2:T:0:N:0:O:0	.	0,53,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	11995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:0:T:2:N:0:O:0	.	0,56,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	11996	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:83:C:0:G:2:T:0:N:0:O:0	.	0,56,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	12086	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,52,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:69:T:0:N:0:O:13	.	0,69,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:85:T:0:N:0:O:4	.	2,25,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	12600	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	2,33,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:73:G:0:T:3:N:0:O:0	.	0,63,3,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	12773	G	A	G	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.02510460251046025	.	A:6:C:0:G:233:T:0:N:0:O:0	.	6,95,0,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	13330	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:3:C:0:G:0:T:123:N:0:O:1	.	3,56,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:0:C:71:G:1:T:4:N:0:O:1	.	0,66,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:91:T:0:N:0:O:11	.	3,41,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	13584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.04918032786885246	.	A:0:C:56:G:0:T:3:N:0:O:2	.	1,29,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	13709	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:2:G:0:T:72:N:0:O:6	.	2,24,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	13710	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:1:G:0:T:77:N:0:O:2	.	2,23,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:77:T:0:N:0:O:0	.	5,28,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:42:C:0:G:2:T:0:N:0:O:0	.	0,5,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:96:T:0:N:0:O:2	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:91:G:0:T:2:N:0:O:3	.	0,76,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	91	.	20	.	1.0	.	A:0:C:0:G:0:T:91:N:0:O:0	.	56,56,35,35	395.551	1246.6	.	.	.	.	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	14478	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:92:G:0:T:0:N:0:O:0	.	0,65,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	0,65,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	2,44,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:73:N:0:O:2	.	0,66,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.12962962962962962	.	A:0:C:47:G:0:T:7:N:0:O:0	.	1,26,6,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:89:G:0:T:5:N:0:O:1	.	0,67,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	16502	T	G	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:0:G:3:T:77:N:0:O:1	.	1,34,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	16645	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,41,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:59:T:0:N:0:O:6	.	2,18,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:1:C:0:G:75:T:2:N:0:O:1	.	2,15,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	16837	G	T	G	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.028089887640449437	.	A:1:C:0:G:128:T:5:N:0:O:44	.	2,98,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	16838	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.060240963855421686	.	A:77:C:0:G:5:T:0:N:0:O:1	.	2,42,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	16980	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	2,34,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:2:G:0:T:0:N:0:O:0	.	2,46,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:78:C:0:G:4:T:0:N:0:O:1	.	4,15,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.07142857142857142	.	A:6:C:0:G:1:T:73:N:0:O:4	.	6,19,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17201	T	A	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:0:T:93:N:0:O:10	.	1,41,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,39,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.05434782608695652	.	A:5:C:0:G:87:T:0:N:0:O:0	.	5,31,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:76:G:0:T:2:N:0:O:4	.	0,35,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:0:C:129:G:0:T:3:N:0:O:7	.	1,90,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	17789	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:117:C:0:G:3:T:0:N:0:O:1	.	3,58,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:71:G:0:T:4:N:0:O:0	.	0,47,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:94:C:0:G:0:T:3:N:0:O:9	.	0,46,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:8:C:0:G:97:T:0:N:0:O:0	.	0,59,8,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:0:C:135:G:0:T:4:N:0:O:0	.	0,100,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:0:C:1:G:4:T:96:N:0:O:2	.	4,36,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:104:G:0:T:4:N:0:O:13	.	3,37,1,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:0:C:0:G:145:T:3:N:0:O:0	.	0,99,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:80:C:0:G:2:T:0:N:0:O:0	.	2,30,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:83:T:1:N:0:O:1	.	2,25,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:37:C:0:G:0:T:1:N:0:O:3	.	0,25,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.05673758865248227	.	A:8:C:0:G:127:T:0:N:0:O:6	.	7,35,1,106	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:85:C:0:G:4:T:0:N:0:O:0	.	3,33,1,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.09230769230769231	.	A:0:C:58:G:1:T:6:N:0:O:0	.	0,51,6,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	0,63,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.06818181818181818	.	A:0:C:3:G:0:T:41:N:0:O:0	.	3,36,0,8	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	20686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:94:T:2:N:0:O:2	.	2,46,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:92:C:0:G:2:T:0:N:0:O:5	.	2,26,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	20906	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	1,27,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.06976744186046512	.	A:0:C:0:G:3:T:40:N:0:O:0	.	3,7,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:0:C:0:G:79:T:6:N:0:O:7	.	0,66,6,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:93:G:0:T:3:N:0:O:1	.	0,53,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:104:G:0:T:3:N:0:O:1	.	0,65,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21277	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:1:N:0:O:0	.	2,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.016666666666666666	.	A:1:C:0:G:0:T:38:N:0:O:21	.	1,46,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21409	C	T	C	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:0:C:137:G:0:T:3:N:0:O:0	.	2,109,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:93:C:0:G:0:T:3:N:0:O:0	.	2,34,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:0:G:2:T:91:N:0:O:0	.	2,35,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:74:G:0:T:4:N:0:O:3	.	2,21,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,26,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:105:T:0:N:0:O:6	.	4,45,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	21958	A	C	C	14	new position at high frequency	Pass	False	True	True	118	.	20	.	0.9745762711864406	.	A:3:C:115:G:0:T:0:N:0:O:0	.	59,61,56,57	273.216	1880.8	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	22509	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:47:G:0:T:1:N:0:O:1	.	1,37,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:5:C:0:G:133:T:0:N:0:O:0	.	5,28,0,110	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	22819	T	G	T	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:0:C:1:G:4:T:192:N:0:O:1	.	0,92,4,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.017241379310344827	.	A:0:C:0:G:3:T:137:N:0:O:34	.	0,105,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:113:G:0:T:3:N:0:O:20	.	2,111,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.9545454545454546	.	A:0:C:0:G:126:T:0:N:0:O:6	.	62,68,64,64	278.474	1663.1	.	.	.	.	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	23661	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:92:T:2:N:0:O:2	.	2,50,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:2:T:0:N:0:O:0	.	2,24,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.07766990291262135	.	A:0:C:94:G:0:T:8:N:0:O:1	.	0,82,8,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	23912	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:111:G:0:T:0:N:0:O:2	.	3,58,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.03125	.	A:155:C:0:G:0:T:5:N:0:O:0	.	5,84,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:0:T:77:N:0:O:0	.	5,23,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:100:G:0:T:3:N:0:O:1	.	0,74,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24192	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	1,70,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:67:G:0:T:2:N:0:O:7	.	0,71,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:82:T:0:N:0:O:0	.	2,19,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.04918032786885246	.	A:2:C:114:G:0:T:6:N:0:O:0	.	0,63,6,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:117:G:0:T:5:N:0:O:4	.	1,85,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:91:N:0:O:1	.	0,59,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	24982	T	C	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:35:N:0:O:1	.	1,28,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	25231	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,44,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25285	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:0:T:111:N:0:O:0	.	1,54,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25460	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:101:G:0:T:4:N:0:O:1	.	0,57,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:86:G:0:T:4:N:0:O:2	.	0,63,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.06796116504854369	.	A:96:C:0:G:0:T:7:N:0:O:0	.	7,49,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:95:N:0:O:2	.	3,43,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	108	.	20	.	0.9907407407407407	.	A:0:C:0:G:1:T:107:N:0:O:0	.	50,51,57,57	419.237	1943.3	.	.	.	.	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:86:G:0:T:0:N:0:O:8	.	2,53,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:0:C:60:G:0:T:2:N:0:O:7	.	2,58,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:78:G:0:T:3:N:0:O:6	.	1,37,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25775	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:115:T:3:N:0:O:0	.	0,52,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00119	artic-pipeline	NB06	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.029197080291970802	.	A:4:C:86:G:0:T:0:N:0:O:47	.	4,37,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.058823529411764705	.	A:47:C:3:G:0:T:0:N:0:O:1	.	1,31,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,59,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:100:C:0:G:3:T:0:N:0:O:2	.	3,32,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:70:C:0:G:4:T:0:N:0:O:2	.	4,18,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:110:T:0:N:0:O:0	.	3,41,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:94:G:0:T:4:N:0:O:0	.	0,60,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26527	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:91:G:1:T:0:N:0:O:1	.	2,42,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	3,26,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.023391812865497075	.	A:0:C:167:G:0:T:4:N:0:O:0	.	0,135,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26566	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:120:C:0:G:4:T:0:N:0:O:0	.	0,59,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26571	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:1:C:87:G:0:T:2:N:0:O:1	.	0,55,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26655	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:88:N:0:O:0	.	2,47,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:78:C:0:G:0:T:3:N:0:O:5	.	3,18,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:70:T:0:N:0:O:1	.	3,8,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,62,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:88:G:0:T:3:N:0:O:1	.	0,60,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.024844720496894408	.	A:0:C:151:G:0:T:4:N:0:O:6	.	0,147,4,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:0:T:2:N:0:O:1	.	0,60,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26923	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:0:G:2:T:98:N:0:O:6	.	0,61,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	26924	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:88:C:0:G:0:T:3:N:0:O:3	.	1,60,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27075	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	2,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:76:C:0:G:2:T:0:N:0:O:0	.	2,17,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:5:C:0:G:75:T:0:N:0:O:0	.	5,20,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:0:C:69:G:0:T:3:N:0:O:0	.	0,57,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,53,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:92:C:0:G:2:T:0:N:0:O:2	.	2,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.061855670103092786	.	A:6:C:89:G:0:T:0:N:0:O:2	.	5,45,1,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.03773584905660377	.	A:119:C:0:G:0:T:6:N:0:O:34	.	5,92,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27745	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:66:C:0:G:2:T:0:N:0:O:1	.	2,6,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:77:T:0:N:0:O:5	.	2,11,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:0:G:3:T:0:N:0:O:1	.	3,34,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	28149	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	1,59,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	28223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:64:T:0:N:0:O:1	.	1,17,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	28698	C	A	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:101:G:0:T:0:N:0:O:34	.	3,69,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,3,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:80:G:0:T:3:N:0:O:2	.	0,58,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:84:T:1:N:0:O:2	.	2,28,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:69:T:0:N:0:O:2	.	2,4,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	1,61,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,37,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:47:C:0:G:1:T:0:N:0:O:1	.	0,3,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:4:C:0:G:105:T:0:N:0:O:16	.	4,34,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:102:T:0:N:0:O:4	.	3,31,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00119	artic-pipeline	NB06	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	306	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	55	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,16,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	59	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:47:G:0:T:1:N:0:O:0	.	0,17,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	60	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,16,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	77	T	A	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:1:C:0:G:0:T:34:N:0:O:1	.	0,13,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:2:C:0:G:0:T:35:N:0:O:3	.	0,12,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	92	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:0:T:1:N:0:O:0	.	0,15,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	105	G	T	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:43:T:1:N:0:O:0	.	0,14,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,14,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	110	C	T	C	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:31:G:0:T:1:N:0:O:2	.	0,7,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	137	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:32:N:0:O:1	.	0,6,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,11,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,12,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	0,10,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	163	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	0,9,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	164	C	A	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:37:G:0:T:0:N:0:O:1	.	0,9,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	165	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,5,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	173	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:24:G:0:T:1:N:0:O:1	.	0,11,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	175	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.07407407407407407	.	A:0:C:2:G:0:T:25:N:0:O:0	.	0,9,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	177	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:23:N:0:O:0	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	207	C	A	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:34:G:0:T:0:N:0:O:0	.	1,7,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	1,11,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	272	A	C	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:26:C:1:G:0:T:0:N:0:O:0	.	1,11,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	285	G	T	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:0:G:33:T:1:N:0:O:0	.	1,15,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	316	T	G	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:0:G:1:T:23:N:0:O:0	.	1,15,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	0,64,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	490	T	A	A	17	accept high frequency variant	Pass	False	True	True	89	.	20	.	0.9887640449438202	.	A:88:C:0:G:0:T:0:N:0:O:1	.	26,27,62,62	70.0	2934.2	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:135:C:0:G:3:T:0:N:0:O:0	.	3,39,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:3:T:104:N:0:O:3	.	3,40,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	830	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:99:C:0:G:0:T:3:N:0:O:0	.	3,27,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	831	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:81:C:0:G:3:T:2:N:0:O:3	.	3,19,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:3:C:0:G:68:T:0:N:0:O:0	.	3,4,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1030	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:3:T:98:N:0:O:1	.	0,60,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:74:T:0:N:0:O:19	.	2,9,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:67:T:0:N:0:O:3	.	2,8,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:67:G:0:T:2:N:0:O:4	.	0,51,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:0:C:137:G:0:T:4:N:0:O:1	.	0,82,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1679	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	2,26,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	1,49,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:0:G:110:T:0:N:0:O:12	.	1,57,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,42,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,33,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:140:C:3:G:0:T:0:N:0:O:0	.	3,66,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:5:C:0:G:83:T:0:N:0:O:2	.	0,33,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:104:C:0:G:3:T:0:N:0:O:0	.	3,46,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	2,28,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3177	C	T	T	17	accept high frequency variant	Pass	False	True	True	203	.	20	.	0.9310344827586207	.	A:0:C:1:G:3:T:189:N:0:O:10	.	79,92,110,111	335.62	703.6	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	3282	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,60,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:119:C:0:G:3:T:0:N:0:O:10	.	3,40,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3413	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:41:C:0:G:1:T:0:N:0:O:3	.	0,17,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:115:C:0:G:5:T:0:N:0:O:0	.	5,40,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:102:T:0:N:0:O:2	.	3,34,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	0,64,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:1:C:78:G:0:T:2:N:0:O:1	.	0,69,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:5:C:0:G:187:T:0:N:0:O:14	.	5,64,0,142	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4322	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:0:C:2:G:0:T:57:N:0:O:0	.	0,54,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.04477611940298507	.	A:0:C:0:G:183:T:9:N:0:O:9	.	0,146,9,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.03167420814479638	.	A:7:C:0:G:213:T:0:N:0:O:1	.	0,116,7,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.035555555555555556	.	A:0:C:201:G:0:T:8:N:0:O:16	.	0,130,8,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:105:C:0:G:0:T:3:N:0:O:1	.	0,61,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:97:G:0:T:4:N:0:O:0	.	0,63,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4881	G	T	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:0:G:120:T:3:N:0:O:0	.	3,57,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4941	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	0,69,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	4984	A	G	A	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:188:C:0:G:4:T:0:N:0:O:0	.	4,58,0,134	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:91:T:2:N:0:O:1	.	2,36,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:83:C:0:G:2:T:0:N:0:O:1	.	2,41,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,23,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:0:T:86:N:0:O:0	.	2,29,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:84:G:0:T:3:N:0:O:4	.	0,57,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.1076923076923077	.	A:0:C:58:G:0:T:7:N:0:O:0	.	0,55,7,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:3:G:0:T:67:N:0:O:0	.	0,49,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5851	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:96:N:0:O:1	.	2,56,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5853	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.04672897196261682	.	A:5:C:0:G:0:T:102:N:0:O:0	.	5,53,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:82:G:0:T:2:N:0:O:2	.	2,34,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6040	C	T	T	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	0.952755905511811	.	A:0:C:1:G:0:T:121:N:0:O:5	.	58,64,63,63	206.227	1014.2	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:0:C:71:G:0:T:5:N:0:O:0	.	0,61,5,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:80:T:0:N:0:O:0	.	2,24,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6133	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,52,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:84:G:0:T:3:N:0:O:4	.	0,58,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,33,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6427	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:1:C:4:G:0:T:79:N:0:O:8	.	0,30,4,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:3:T:105:N:0:O:4	.	0,67,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.04285714285714286	.	A:191:C:0:G:9:T:1:N:0:O:9	.	9,97,0,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6859	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:99:C:0:G:4:T:0:N:0:O:1	.	4,46,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	6869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	2,35,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:77:C:0:G:0:T:7:N:0:O:0	.	0,66,7,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:94:T:0:N:0:O:2	.	3,27,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	2,29,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	7966	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:91:C:1:G:3:T:0:N:0:O:2	.	3,32,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.02072538860103627	.	A:185:C:4:G:0:T:0:N:0:O:4	.	0,127,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	8185	G	T	G	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.02074688796680498	.	A:0:C:0:G:224:T:5:N:0:O:12	.	5,137,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	8470	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,19,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:0:C:3:G:0:T:76:N:0:O:0	.	0,54,3,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:0:T:98:N:0:O:0	.	0,63,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	8782	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	1.0	.	A:0:C:0:G:0:T:132:N:0:O:0	.	61,61,71,71	279.237	1336.1	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:3:C:1:G:73:T:0:N:0:O:1	.	3,7,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	8950	C	T	T	17	accept high frequency variant	Pass	False	True	True	326	.	20	.	0.9723926380368099	.	A:0:C:0:G:0:T:317:N:0:O:9	.	177,186,140,140	350.0	2108.4	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:0:T:122:N:0:O:6	.	3,66,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:4:C:0:G:128:T:0:N:0:O:1	.	4,65,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	9472	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,52,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:83:G:0:T:2:N:0:O:11	.	0,70,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	9791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	0,50,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:73:T:0:N:0:O:2	.	2,22,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:85:G:0:T:2:N:0:O:8	.	2,34,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:4:C:0:G:0:T:117:N:0:O:2	.	0,70,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10190	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:4:G:0:T:112:N:0:O:2	.	0,70,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10261	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,32,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:85:T:0:N:0:O:2	.	3,25,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,40,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10528	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	1,44,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:97:C:0:G:4:T:0:N:0:O:0	.	4,39,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:87:G:1:T:2:N:0:O:0	.	0,60,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.05217391304347826	.	A:0:C:0:G:6:T:103:N:0:O:6	.	0,64,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	10995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:80:C:0:G:1:T:2:N:0:O:4	.	0,31,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	11451	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:2:G:0:T:0:N:0:O:0	.	2,49,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	11471	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:87:G:0:T:2:N:0:O:2	.	1,59,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0891089108910891	.	A:0:C:91:G:0:T:9:N:0:O:1	.	0,61,9,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.021052631578947368	.	A:1:C:0:G:128:T:4:N:0:O:57	.	0,83,4,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:70:C:0:G:4:T:0:N:0:O:0	.	1,53,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:4:C:0:G:152:T:0:N:0:O:3	.	4,36,0,123	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	12256	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:125:T:0:N:0:O:0	.	3,66,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.017391304347826087	.	A:2:C:0:G:86:T:0:N:0:O:27	.	0,86,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:69:T:0:N:0:O:3	.	2,18,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	12478	G	A	A	14	new position at high frequency	Pass	False	True	True	118	.	20	.	0.9661016949152542	.	A:114:C:0:G:1:T:0:N:0:O:3	.	52,56,62,62	209.237	1128.5	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.07317073170731707	.	A:0:C:73:G:0:T:6:N:0:O:3	.	0,63,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:3:C:0:G:144:T:0:N:0:O:6	.	3,55,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:111:G:0:T:5:N:0:O:0	.	0,75,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:109:T:0:N:0:O:2	.	4,32,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:104:T:0:N:0:O:1	.	3,48,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13128	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	1,60,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:0:T:116:N:0:O:12	.	3,68,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13330	T	A	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:0:T:133:N:0:O:0	.	3,69,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.0945945945945946	.	A:0:C:67:G:0:T:7:N:0:O:0	.	0,64,7,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:94:T:0:N:0:O:10	.	3,41,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:1:C:0:G:2:T:93:N:0:O:5	.	0,52,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13616	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:74:C:0:G:2:T:0:N:0:O:1	.	2,19,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.07317073170731707	.	A:36:C:0:G:3:T:0:N:0:O:2	.	0,1,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	14309	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:112:T:0:N:0:O:0	.	3,49,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:96:G:0:T:2:N:0:O:1	.	0,67,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:80:T:0:N:0:O:0	.	2,25,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	14661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	0,50,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	14716	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:0:T:2:N:0:O:1	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	15050	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:95:G:0:T:2:N:0:O:0	.	0,46,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:0:C:4:G:0:T:73:N:0:O:1	.	0,70,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	15297	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:2:G:0:T:97:N:0:O:7	.	0,37,2,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	0,69,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	15693	A	G	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.027210884353741496	.	A:143:C:0:G:4:T:0:N:0:O:0	.	4,71,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.075	.	A:0:C:36:G:0:T:3:N:0:O:1	.	0,21,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:87:N:0:O:5	.	2,32,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:126:T:3:N:0:O:5	.	3,68,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:0:G:76:T:2:N:0:O:1	.	2,20,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,28,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:70:C:4:G:0:T:0:N:0:O:1	.	4,41,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	0,6,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	170	.	20	.	0.023529411764705882	.	A:4:C:0:G:165:T:0:N:0:O:1	.	4,36,0,134	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:78:C:0:G:2:T:0:N:0:O:4	.	0,54,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:82:G:0:T:2:N:0:O:4	.	0,71,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:67:C:0:G:4:T:0:N:0:O:4	.	4,14,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:4:C:0:G:0:T:66:N:0:O:2	.	4,14,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:3:T:0:N:0:O:0	.	3,47,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:2:G:1:T:0:N:0:O:0	.	2,22,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17448	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:82:C:2:G:0:T:0:N:0:O:3	.	1,33,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17449	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:1:G:0:T:64:N:0:O:0	.	2,11,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17450	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:81:N:0:O:0	.	1,29,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,31,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:0:C:190:G:0:T:4:N:0:O:2	.	0,98,4,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:5:C:0:G:108:T:0:N:0:O:1	.	0,64,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:92:C:0:G:2:T:0:N:0:O:6	.	2,27,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,20,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	18014	C	A	C	16	ignore low frequency variant	Pass	False	False	True	281	.	20	.	0.021352313167259787	.	A:6:C:268:G:0:T:0:N:0:O:7	.	0,137,6,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	18318	G	T	T	15	new position with no illumina data	Check	False	True	True	264	.	20	.	0.8977272727272727	.	A:0:C:1:G:22:T:237:N:0:O:4	.	103,116,134,148	122.705	1542.0	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:0:G:3:T:101:N:0:O:1	.	3,41,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	18736	T	C	C	17	accept high frequency variant	Pass	False	True	True	103	.	20	.	0.9902912621359223	.	A:0:C:102:G:0:T:1:N:0:O:0	.	57,58,45,45	416.227	1600.4	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	18978	A	G	A	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.03680981595092025	.	A:157:C:0:G:6:T:0:N:0:O:0	.	6,76,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:4:C:0:G:110:T:0:N:0:O:2	.	4,24,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.09375	.	A:0:C:58:G:0:T:6:N:0:O:0	.	0,54,6,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	19489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	0,63,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	19561	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,39,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:0:C:2:G:0:T:46:N:0:O:0	.	2,27,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:0:G:3:T:70:N:0:O:1	.	0,32,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	20011	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,54,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:89:C:0:G:2:T:0:N:0:O:2	.	2,29,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:64:C:0:G:2:T:0:N:0:O:1	.	0,3,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:81:T:0:N:0:O:13	.	1,18,2,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.09259259259259259	.	A:0:C:1:G:5:T:48:N:0:O:0	.	5,9,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.10714285714285714	.	A:0:C:0:G:68:T:9:N:0:O:7	.	0,61,9,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:81:G:0:T:2:N:0:O:0	.	0,57,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:2:T:0:N:0:O:0	.	2,5,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:5:C:0:G:76:T:0:N:0:O:4	.	5,20,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:113:G:0:T:3:N:0:O:1	.	2,71,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:98:N:0:O:1	.	0,82,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.043478260869565216	.	A:6:C:0:G:129:T:0:N:0:O:3	.	6,63,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:4:C:0:G:139:T:0:N:0:O:0	.	4,74,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:201:C:0:G:1:T:5:N:0:O:0	.	5,104,0,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	22573	T	C	T	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:0:C:3:G:0:T:146:N:0:O:2	.	1,144,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	22711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.019230769230769232	.	A:0:C:3:G:0:T:146:N:0:O:7	.	1,94,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.020833333333333332	.	A:0:C:0:G:5:T:198:N:0:O:37	.	0,136,5,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	22988	G	C	G	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.024630541871921183	.	A:0:C:5:G:198:T:0:N:0:O:0	.	5,79,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:97:N:0:O:1	.	1,65,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:93:T:0:N:0:O:8	.	2,38,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:3:C:0:G:84:T:0:N:0:O:6	.	3,20,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:89:C:0:G:3:T:0:N:0:O:0	.	2,45,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23645	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:91:N:0:O:4	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23836	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:0:T:76:N:0:O:0	.	2,24,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.07142857142857142	.	A:0:C:91:G:0:T:7:N:0:O:0	.	0,75,7,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,78,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23911	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:3:G:0:T:0:N:0:O:1	.	3,52,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:138:C:0:G:0:T:4:N:0:O:0	.	4,72,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.057971014492753624	.	A:4:C:0:G:0:T:65:N:0:O:0	.	4,15,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24034	C	T	T	17	accept high frequency variant	Pass	False	True	True	127	.	20	.	1.0	.	A:0:C:0:G:0:T:127:N:0:O:0	.	61,61,66,66	210.0	740.6	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	24049	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,16,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:75:G:0:T:3:N:0:O:2	.	0,68,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,20,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:5:C:0:G:85:T:1:N:0:O:11	.	5,33,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24382	C	G	G	14	new position at high frequency	Pass	False	True	True	112	.	20	.	1.0	.	A:0:C:0:G:112:T:0:N:0:O:0	.	62,62,50,50	412.247	1928.5	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24399	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:86:T:0:N:0:O:7	.	0,59,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:1:C:144:G:0:T:4:N:0:O:6	.	0,78,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.03597122302158273	.	A:0:C:133:G:0:T:5:N:0:O:1	.	1,90,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:94:C:0:G:4:T:0:N:0:O:0	.	4,35,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	37	.	20	.	0.10810810810810811	.	A:0:C:4:G:0:T:33:N:0:O:0	.	3,26,1,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	25205	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,63,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:103:C:0:G:3:T:0:N:0:O:2	.	2,48,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25295	A	C	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:3:G:0:T:0:N:0:O:0	.	3,49,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:98:C:0:G:2:T:0:N:0:O:4	.	2,25,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:0:G:3:T:89:N:0:O:2	.	3,27,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25464	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:90:N:0:O:6	.	0,70,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25471	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:118:T:0:N:0:O:0	.	3,52,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:0:G:5:T:89:N:0:O:3	.	5,43,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25591	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,17,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25704	T	C	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:2:G:0:T:75:N:0:O:0	.	1,47,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.017241379310344827	.	A:2:C:71:G:0:T:0:N:0:O:43	.	1,29,1,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.10638297872340426	.	A:41:C:5:G:0:T:0:N:0:O:1	.	1,23,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,40,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:0:G:2:T:0:N:0:O:3	.	2,32,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:73:C:0:G:3:T:0:N:0:O:0	.	3,21,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	1,51,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	25890	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:87:C:2:G:0:T:0:N:0:O:3	.	2,28,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,34,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:81:T:1:N:0:O:0	.	2,25,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26252	C	T	C	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.14418604651162792	.	A:0:C:166:G:0:T:31:N:0:O:18	.	17,153,14,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26304	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	0,45,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	0,49,1,1	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26542	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:82:G:0:T:3:N:0:O:1	.	0,56,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26673	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:111:N:0:O:1	.	0,76,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.07407407407407407	.	A:96:C:0:G:0:T:8:N:0:O:4	.	8,29,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:85:T:0:N:0:O:0	.	3,10,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26729	T	C	C	17	accept high frequency variant	Pass	False	True	True	148	.	20	.	0.9864864864864865	.	A:0:C:146:G:0:T:0:N:0:O:2	.	84,86,62,62	270.206	1784.7	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:120:G:0:T:3:N:0:O:1	.	0,86,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	26922	C	G	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:2:T:1:N:0:O:0	.	0,52,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	27052	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	0,73,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:2:T:0:N:0:O:2	.	2,23,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:77:G:0:T:4:N:0:O:0	.	0,57,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	27514	G	C	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:4:G:101:T:0:N:0:O:1	.	4,37,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:97:G:0:T:3:N:0:O:1	.	0,65,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28077	G	C	C	17	accept high frequency variant	Pass	False	True	True	118	.	20	.	0.9915254237288136	.	A:0:C:117:G:0:T:0:N:0:O:1	.	66,67,51,51	210.0	1853.4	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	28144	T	C	C	17	accept high frequency variant	Pass	False	True	True	254	.	20	.	0.9960629921259843	.	A:0:C:253:G:0:T:1:N:0:O:0	.	130,130,123,124	404.672	1507.0	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:92:G:0:T:0:N:0:O:10	.	3,63,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:0:C:49:G:0:T:1:N:0:O:6	.	1,25,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28490	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	2,38,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28638	C	A	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:80:G:0:T:0:N:0:O:1	.	2,38,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,66,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:108:G:0:T:4:N:0:O:3	.	0,75,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	28896	C	G	G	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:0:G:124:T:0:N:0:O:0	.	54,54,70,70	190.992	2035.6	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:63:T:0:N:0:O:1	.	2,4,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,42,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:105:G:0:T:0:N:0:O:4	.	3,61,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	0,58,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:101:N:0:O:2	.	0,62,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29378	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:2:G:0:T:0:N:0:O:1	.	0,48,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:4:C:0:G:120:T:0:N:0:O:3	.	3,26,1,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:104:C:0:G:5:T:0:N:0:O:1	.	5,19,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.05384615384615385	.	A:7:C:0:G:107:T:0:N:0:O:16	.	7,30,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29451	C	T	T	17	accept high frequency variant	Pass	False	True	True	193	.	20	.	0.9740932642487047	.	A:0:C:1:G:0:T:188:N:0:O:4	.	101,106,87,87	279.237	2489.3	.	.	.	.	.	.	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	29700	A	G	G	17	accept high frequency variant	Pass	True	True	True	113	.	20	.	0.7964601769911505	.	A:0:C:0:G:90:T:0:N:0:O:23	.	29,52,61,61	221.58	959.0	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00120	artic-pipeline	NB07	MN908947.3	29777	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	0,58,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	29804	T	C	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:3:G:0:T:121:N:0:O:3	.	0,78,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00120	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	156	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	160	G	T	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:19:T:1:N:0:O:1	.	0,9,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	212	T	A	A	1	near depth threshold	Alarm	False	True	True	11	.	20	.	1.0	.	A:11:C:0:G:0:T:0:N:0:O:0	.	4,4,7,7	210.0	1889.0	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	233	C	T	T	1	near depth threshold	Alarm	False	True	True	13	.	20	.	1.0	.	A:0:C:0:G:0:T:13:N:0:O:0	.	7,7,6,6	490.0	2670.1	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	14	.	20	.	1.0	.	A:0:C:0:G:0:T:14:N:0:O:0	.	8,8,6,6	139.237	2670.1	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.05925925925925926	.	A:127:C:0:G:8:T:0:N:0:O:0	.	8,45,0,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1027	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:2:G:0:T:68:N:0:O:0	.	1,63,1,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	140	.	20	.	0.9928571428571429	.	A:0:C:0:G:0:T:139:N:0:O:1	.	70,71,69,69	210.0	1361.4	.	.	.	.	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:79:T:0:N:0:O:19	.	2,16,1,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,40,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,27,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	1338	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:116:T:0:N:0:O:2	.	3,50,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:117:G:0:T:4:N:0:O:2	.	0,75,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:82:G:3:T:0:N:0:O:7	.	3,33,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	1,1,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:4:G:0:T:92:N:0:O:9	.	0,49,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:1:T:0:N:0:O:0	.	1,2,0,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2184	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,36,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2195	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:90:T:0:N:0:O:13	.	2,35,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.0660377358490566	.	A:7:C:0:G:97:T:0:N:0:O:2	.	7,40,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	2204	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:93:T:0:N:0:O:5	.	1,39,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,34,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2477	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,19,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:3:G:0:T:0:N:0:O:0	.	2,54,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,31,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	2894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,27,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3015	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,40,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.5714285714285714	.	A:0:C:0:G:0:T:72:N:0:O:54	.	42,96,30,30	43.922	1476.7	.	.	.	.	mixed position	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	3142	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:75:N:0:O:1	.	0,63,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:98:C:0:G:3:T:0:N:0:O:2	.	3,11,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:0:T:101:N:0:O:2	.	0,61,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.03076923076923077	.	A:125:C:0:G:4:T:0:N:0:O:1	.	4,45,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3395	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.029197080291970802	.	A:4:C:0:G:133:T:0:N:0:O:0	.	4,50,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:82:G:0:T:3:N:0:O:3	.	0,47,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:47:C:0:G:0:T:2:N:0:O:2	.	2,23,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:81:G:0:T:3:N:0:O:0	.	0,62,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:77:T:0:N:0:O:1	.	0,53,4,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	3981	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,54,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:116:C:0:G:4:T:0:N:0:O:1	.	3,50,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.03255813953488372	.	A:7:C:0:G:198:T:0:N:0:O:10	.	7,72,0,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:96:C:3:G:0:T:0:N:0:O:0	.	3,29,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.030456852791878174	.	A:0:C:0:G:179:T:6:N:0:O:12	.	0,152,6,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:5:C:0:G:202:T:0:N:0:O:0	.	0,120,5,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:0:C:182:G:0:T:5:N:0:O:19	.	1,132,4,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:0:T:2:N:0:O:2	.	0,54,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4613	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:95:G:0:T:2:N:0:O:5	.	1,51,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,52,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4887	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:93:G:0:T:2:N:0:O:2	.	1,40,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:0:G:3:T:105:N:0:O:1	.	0,64,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:81:G:0:T:2:N:0:O:2	.	0,65,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	4947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:89:G:0:T:2:N:0:O:1	.	0,71,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5101	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:0:T:2:N:0:O:0	.	0,63,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:71:C:3:G:0:T:0:N:0:O:0	.	1,38,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:96:C:3:G:0:T:0:N:0:O:1	.	3,44,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5550	T	A	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:1:G:0:T:77:N:0:O:1	.	2,55,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5605	G	A	G	16	ignore low frequency variant	Pass	False	False	True	265	.	20	.	0.018867924528301886	.	A:5:C:0:G:238:T:0:N:0:O:22	.	4,127,1,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:60:G:0:T:2:N:0:O:0	.	0,56,2,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	0,43,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:89:T:0:N:0:O:3	.	2,21,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	5853	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:0:T:100:N:0:O:0	.	3,40,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:0:C:81:G:0:T:6:N:0:O:0	.	0,67,6,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,26,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:86:G:0:T:3:N:0:O:2	.	0,65,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:0:G:78:T:2:N:0:O:0	.	1,18,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:2:G:0:T:88:N:0:O:0	.	0,59,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:79:T:0:N:0:O:1	.	2,28,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6386	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:98:N:0:O:2	.	0,64,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:0:C:187:G:0:T:4:N:0:O:6	.	0,124,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.10975609756097561	.	A:73:C:0:G:0:T:9:N:0:O:0	.	0,62,9,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:85:T:1:N:0:O:0	.	2,21,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	7822	T	A	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:0:T:78:N:0:O:0	.	0,51,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	7823	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:80:G:0:T:2:N:0:O:0	.	0,52,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	7824	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:118:C:0:G:0:T:3:N:0:O:14	.	0,74,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:88:C:0:G:3:T:0:N:0:O:1	.	3,28,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	8379	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:56:C:0:G:2:T:0:N:0:O:0	.	2,23,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:0:T:2:N:0:O:0	.	2,32,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	8455	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:1:G:0:T:91:N:0:O:1	.	0,44,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	8510	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	1,52,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	8672	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:109:N:0:O:0	.	3,54,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	8683	C	T	T	14	new position at high frequency	Pass	False	True	True	146	.	20	.	0.9726027397260274	.	A:0:C:0:G:0:T:142:N:0:O:4	.	69,73,73,73	280.0	1866.9	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:77:T:0:N:0:O:1	.	3,7,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.03937007874015748	.	A:5:C:0:G:0:T:117:N:0:O:5	.	5,54,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9101	G	A	G	16	ignore low frequency variant	Pass	False	False	True	156	.	20	.	0.019230769230769232	.	A:3:C:0:G:141:T:0:N:0:O:12	.	2,69,1,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:118:T:0:N:0:O:0	.	3,64,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,62,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.047619047619047616	.	A:0:C:0:G:119:T:6:N:0:O:1	.	0,64,6,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9521	C	T	C	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:0:C:147:G:0:T:3:N:0:O:3	.	0,77,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:124:G:0:T:3:N:0:O:2	.	0,99,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:56:G:0:T:2:N:0:O:25	.	1,71,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	1,29,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:79:G:0:T:0:N:0:O:13	.	0,34,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:1:C:47:G:0:T:2:N:0:O:5	.	0,41,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.02843601895734597	.	A:6:C:0:G:205:T:0:N:0:O:0	.	6,73,0,138	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:0:C:106:G:0:T:5:N:0:O:1	.	0,70,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	10450	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:97:G:0:T:0:N:0:O:4	.	2,47,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:90:G:0:T:3:N:0:O:1	.	0,61,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.05504587155963303	.	A:0:C:0:G:6:T:97:N:0:O:6	.	0,58,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11047	A	G	A	16	ignore low frequency variant	Pass	False	False	True	255	.	20	.	0.023529411764705882	.	A:246:C:0:G:6:T:0:N:0:O:3	.	6,106,0,149	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11079	T	G	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:0:G:2:T:34:N:0:O:0	.	1,8,1,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.058823529411764705	.	A:0:C:0:G:2:T:32:N:0:O:0	.	2,6,0,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11139	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:88:G:0:T:2:N:0:O:9	.	0,70,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	11442	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:97:G:0:T:2:N:0:O:6	.	1,64,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11472	T	A	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:2:C:0:G:0:T:82:N:0:O:0	.	2,46,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:94:G:0:T:2:N:0:O:1	.	0,67,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:108:G:0:T:3:N:0:O:6	.	0,67,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11732	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:107:C:0:G:4:T:0:N:0:O:1	.	3,51,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.029411764705882353	.	A:0:C:0:G:131:T:6:N:0:O:67	.	0,87,6,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.09230769230769231	.	A:58:C:0:G:6:T:0:N:0:O:1	.	0,47,6,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	3,53,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:73:T:0:N:0:O:20	.	0,74,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12285	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:2:G:0:T:0:N:0:O:0	.	2,44,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:0:C:117:G:0:T:5:N:0:O:0	.	5,53,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.04	.	A:1:C:113:G:0:T:5:N:0:O:6	.	5,57,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12370	T	A	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:3:C:0:G:0:T:126:N:0:O:1	.	1,75,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:78:T:0:N:0:O:3	.	4,20,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12554	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:83:T:0:N:0:O:5	.	0,35,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:0:C:74:G:0:T:5:N:0:O:1	.	0,59,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:106:C:0:G:3:T:0:N:0:O:4	.	3,58,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12853	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:118:G:0:T:3:N:0:O:0	.	2,55,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12943	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:104:T:0:N:0:O:1	.	4,43,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12956	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:128:C:0:G:3:T:0:N:0:O:1	.	3,57,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	12962	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:0:G:96:T:0:N:0:O:6	.	2,27,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:80:T:0:N:0:O:2	.	3,28,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13175	A	G	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:144:C:0:G:3:T:0:N:0:O:0	.	2,75,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:0:C:71:G:0:T:5:N:0:O:0	.	0,69,5,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:5:C:0:G:77:T:0:N:0:O:5	.	5,24,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13743	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:116:G:0:T:3:N:0:O:4	.	0,100,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13747	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:134:C:0:G:0:T:3:N:0:O:3	.	0,94,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13748	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:134:C:0:G:0:T:3:N:0:O:3	.	0,94,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:3:C:0:G:116:T:1:N:0:O:0	.	3,41,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.08695652173913043	.	A:40:C:0:G:4:T:0:N:0:O:2	.	0,5,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	88	.	20	.	0.9886363636363636	.	A:0:C:0:G:0:T:87:N:0:O:1	.	52,53,35,35	477.682	1320.1	.	.	.	.	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	14573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:0:C:178:G:0:T:4:N:0:O:1	.	0,114,4,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:107:N:0:O:2	.	0,69,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	14967	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:0:G:107:T:0:N:0:O:0	.	3,53,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:7:C:0:G:84:T:0:N:0:O:1	.	7,32,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	15422	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:2:G:0:T:1:N:0:O:1	.	2,48,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	15493	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:1:N:0:O:0	.	2,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:0:C:0:G:107:T:4:N:0:O:1	.	0,65,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	15758	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:1:G:2:T:0:N:0:O:0	.	1,51,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.13043478260869565	.	A:0:C:40:G:0:T:6:N:0:O:0	.	0,27,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.05714285714285714	.	A:0:C:98:G:0:T:6:N:0:O:1	.	0,67,6,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	16749	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:104:C:0:G:3:T:0:N:0:O:4	.	3,37,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:3:C:0:G:65:T:0:N:0:O:6	.	3,17,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	16827	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:0:G:75:T:3:N:0:O:5	.	3,22,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:72:C:3:G:0:T:0:N:0:O:0	.	3,38,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:42:C:0:G:1:T:0:N:0:O:4	.	0,6,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.04216867469879518	.	A:153:C:0:G:7:T:0:N:0:O:6	.	7,44,0,122	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.04294478527607362	.	A:7:C:0:G:153:T:0:N:0:O:3	.	7,33,0,130	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17102	G	A	G	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.025	.	A:5:C:0:G:195:T:0:N:0:O:0	.	5,67,0,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17119	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.021164021164021163	.	A:0:C:185:G:0:T:4:N:0:O:0	.	1,83,3,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:75:C:0:G:3:T:0:N:0:O:2	.	3,11,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:0:T:76:N:0:O:3	.	3,13,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:2:T:92:N:0:O:2	.	0,62,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.06172839506172839	.	A:0:C:74:G:0:T:5:N:0:O:2	.	0,60,5,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	17616	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,44,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	185	.	20	.	0.021621621621621623	.	A:0:C:180:G:0:T:4:N:0:O:1	.	0,95,4,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:0:C:64:G:0:T:2:N:0:O:1	.	0,42,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.06481481481481481	.	A:7:C:0:G:101:T:0:N:0:O:0	.	0,59,7,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	18117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:0:C:147:G:0:T:3:N:0:O:0	.	3,65,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.033783783783783786	.	A:0:C:142:G:0:T:5:N:0:O:1	.	0,79,5,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:0:C:0:G:5:T:111:N:0:O:2	.	4,35,1,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.032467532467532464	.	A:0:C:0:G:147:T:5:N:0:O:2	.	0,85,5,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	18735	A	G	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:1:T:0:N:0:O:0	.	1,20,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	19104	T	A	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:3:C:0:G:0:T:147:N:0:O:2	.	0,74,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:131:T:0:N:0:O:1	.	3,28,0,107	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:81:C:0:G:4:T:0:N:0:O:1	.	4,26,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:91:T:0:N:0:O:2	.	4,37,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	19367	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:0:T:3:N:0:O:0	.	0,68,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:67:G:0:T:4:N:0:O:0	.	0,61,4,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.028735632183908046	.	A:5:C:0:G:0:T:137:N:0:O:32	.	0,76,5,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:105:C:0:G:0:T:4:N:0:O:0	.	0,66,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:83:T:0:N:0:O:11	.	2,19,1,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:0:C:0:G:2:T:58:N:0:O:0	.	2,10,0,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.15789473684210525	.	A:0:C:0:G:76:T:15:N:0:O:4	.	0,66,15,29	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:0:C:90:G:0:T:3:N:0:O:1	.	0,62,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,21,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:1:C:2:G:0:T:41:N:0:O:23	.	0,52,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:1:C:79:G:0:T:3:N:0:O:0	.	0,59,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:84:G:0:T:2:N:0:O:0	.	0,63,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:3:C:0:G:83:T:0:N:0:O:1	.	3,16,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21505	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:77:C:0:G:2:T:0:N:0:O:2	.	0,35,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	21635	C	A	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:67:G:0:T:0:N:0:O:0	.	1,51,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22212	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:113:G:0:T:3:N:0:O:0	.	3,74,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:0:G:3:T:113:N:0:O:0	.	3,35,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22337	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:21:C:0:G:1:T:0:N:0:O:1	.	1,14,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22358	T	A	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:0:T:26:N:0:O:1	.	0,15,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22361	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:22:T:0:N:0:O:0	.	0,10,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22428	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.08	.	A:0:C:2:G:0:T:22:N:0:O:1	.	0,12,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:24:G:0:T:1:N:0:O:2	.	0,13,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22484	G	T	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:26:T:1:N:0:O:0	.	1,14,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	22498	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:22:G:0:T:1:N:0:O:0	.	0,15,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22499	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:21:N:0:O:0	.	0,12,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22506	C	A	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:25:G:0:T:0:N:0:O:0	.	0,13,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22530	C	T	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:23:G:0:T:1:N:0:O:0	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.03870967741935484	.	A:0:C:0:G:149:T:6:N:0:O:0	.	0,105,6,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0392156862745098	.	A:6:C:0:G:146:T:0:N:0:O:1	.	6,33,0,120	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0223463687150838	.	A:0:C:4:G:0:T:173:N:0:O:2	.	0,115,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23237	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:113:N:0:O:0	.	0,69,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	130	.	20	.	0.9615384615384616	.	A:0:C:0:G:125:T:0:N:0:O:5	.	60,65,65,65	70.0	1631.1	.	.	.	.	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.08888888888888889	.	A:0:C:82:G:0:T:8:N:0:O:0	.	0,73,8,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,73,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23897	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:80:G:0:T:1:N:0:O:10	.	2,56,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:137:C:0:G:0:T:5:N:0:O:0	.	4,69,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.08108108108108109	.	A:6:C:0:G:0:T:68:N:0:O:0	.	5,18,1,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	23969	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:71:N:0:O:0	.	1,16,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:84:T:0:N:0:O:2	.	2,54,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:78:T:0:N:0:O:0	.	3,15,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:90:G:0:T:2:N:0:O:1	.	0,69,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:65:G:0:T:3:N:0:O:8	.	0,71,3,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,22,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:77:T:0:N:0:O:7	.	5,21,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:104:C:0:G:3:T:0:N:0:O:0	.	3,39,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24420	A	G	A	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.024875621890547265	.	A:194:C:0:G:5:T:0:N:0:O:2	.	5,82,0,119	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:91:C:4:G:0:T:0:N:0:O:0	.	4,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:92:C:0:G:2:T:0:N:0:O:5	.	2,34,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:110:G:0:T:3:N:0:O:1	.	0,82,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24720	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,62,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	0,63,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:89:N:0:O:1	.	0,64,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	24929	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:1:C:2:G:0:T:94:N:0:O:0	.	0,60,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25160	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:130:G:0:T:3:N:0:O:1	.	0,73,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:109:C:0:G:0:T:3:N:0:O:1	.	3,50,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25508	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:105:G:0:T:3:N:0:O:0	.	0,62,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	108	.	20	.	1.0	.	A:0:C:0:G:0:T:108:N:0:O:0	.	38,38,70,70	210.0	1875.9	.	.	.	.	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	25572	C	A	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:2:C:98:G:0:T:0:N:0:O:11	.	2,54,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25602	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,60,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:65:G:0:T:2:N:0:O:16	.	2,68,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25704	T	C	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:0:C:2:G:0:T:71:N:0:O:0	.	2,44,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:73:T:0:N:0:O:2	.	2,16,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:2:G:72:T:0:N:0:O:3	.	2,16,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:73:G:0:T:2:N:0:O:7	.	2,35,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:5:C:66:G:0:T:0:N:0:O:41	.	3,38,2,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:55:C:3:G:0:T:1:N:0:O:3	.	2,35,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,63,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26176	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:110:G:0:T:0:N:0:O:1	.	2,44,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,57,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:87:G:0:T:2:N:0:O:0	.	0,53,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	1,39,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:2:T:0:N:0:O:1	.	2,33,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:99:T:0:N:0:O:0	.	3,36,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	248	.	20	.	0.024193548387096774	.	A:0:C:242:G:0:T:6:N:0:O:0	.	0,182,6,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.08333333333333333	.	A:107:C:0:G:0:T:10:N:0:O:3	.	10,39,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:87:T:0:N:0:O:4	.	4,13,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	26710	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	1,23,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:78:T:0:N:0:O:1	.	4,25,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:67:G:0:T:3:N:0:O:0	.	0,58,3,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:4:C:81:G:0:T:0:N:0:O:4	.	3,40,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:106:C:0:G:0:T:3:N:0:O:26	.	3,79,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	28221	G	C	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.17346938775510204	.	A:2:C:17:G:78:T:0:N:0:O:1	.	11,31,6,67	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	28414	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:85:N:0:O:1	.	0,62,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	28647	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,56,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:96:G:0:T:4:N:0:O:5	.	0,69,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	28815	A	C	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:2:G:0:T:0:N:0:O:2	.	2,48,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	28818	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:89:G:0:T:2:N:0:O:3	.	0,53,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29055	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:46:C:0:G:0:T:1:N:0:O:0	.	1,11,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29056	A	T	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:36:C:1:G:0:T:1:N:0:O:0	.	1,2,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29111	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	1,25,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:95:G:0:T:0:N:0:O:3	.	2,48,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	1,57,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:76:T:0:N:0:O:0	.	0,37,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29366	C	T	C	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.05699481865284974	.	A:0:C:181:G:0:T:11:N:0:O:1	.	7,97,4,96	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.02857142857142857	.	A:168:C:1:G:5:T:0:N:0:O:1	.	5,76,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00122	artic-pipeline	NB08	MN908947.3	29670	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,9,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00122	artic-pipeline	NB08	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	361	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:50:C:0:G:2:T:0:N:0:O:0	.	2,23,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	388	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:44:T:0:N:0:O:2	.	1,15,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	430	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:0:G:1:T:0:N:0:O:0	.	1,29,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	431	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:47:T:0:N:0:O:0	.	1,39,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.034482758620689655	.	A:0:C:2:G:0:T:56:N:0:O:0	.	0,45,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	435	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:47:C:0:G:2:T:0:N:0:O:0	.	1,28,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:1:T:0:N:0:O:1	.	1,20,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:36:N:0:O:4	.	1,16,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	457	T	G	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:1:T:35:N:0:O:3	.	0,16,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	487	G	C	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:1:G:46:T:0:N:0:O:0	.	1,24,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	1,22,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	489	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:45:C:0:G:1:T:0:N:0:O:2	.	1,43,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.06896551724137931	.	A:53:C:0:G:4:T:0:N:0:O:1	.	4,20,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:1:T:41:N:0:O:4	.	1,21,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	577	T	A	T	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:1:C:0:G:0:T:41:N:0:O:9	.	1,24,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	578	G	T	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:0:C:0:G:48:T:2:N:0:O:1	.	0,24,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	579	G	T	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:46:T:1:N:0:O:1	.	1,30,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	587	G	T	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:0:G:66:T:4:N:0:O:1	.	3,33,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	623	A	C	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:1:G:0:T:0:N:0:O:1	.	1,22,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	702	G	T	G	16	ignore low frequency variant	Pass	False	False	True	246	.	20	.	0.02032520325203252	.	A:0:C:0:G:240:T:5:N:0:O:1	.	3,137,2,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	248	.	20	.	0.020161290322580645	.	A:0:C:240:G:0:T:5:N:0:O:3	.	3,136,2,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	829	C	G	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:1:C:113:G:4:T:1:N:0:O:0	.	0,35,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:93:C:0:G:0:T:2:N:0:O:1	.	2,8,0,88	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1108	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:111:G:0:T:4:N:0:O:3	.	3,69,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:73:T:0:N:0:O:30	.	2,8,1,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:0:C:2:G:0:T:52:N:0:O:0	.	1,45,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1404	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:121:G:0:T:5:N:0:O:0	.	2,71,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	1533	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:94:T:0:N:0:O:1	.	0,61,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1627	C	A	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:34:G:0:T:0:N:0:O:2	.	1,19,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:1:C:46:G:0:T:0:N:0:O:15	.	1,37,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.016129032258064516	.	A:1:C:46:G:0:T:0:N:0:O:15	.	1,37,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:1:G:0:T:0:N:0:O:0	.	1,20,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1726	T	G	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:0:G:1:T:48:N:0:O:0	.	0,27,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1748	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:37:T:0:N:0:O:2	.	1,37,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1772	G	T	G	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:0:G:61:T:2:N:0:O:2	.	2,32,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:0:C:2:G:0:T:42:N:0:O:0	.	0,25,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1792	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:0:T:63:N:0:O:4	.	2,33,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1814	A	C	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:1:G:0:T:0:N:0:O:0	.	1,13,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1815	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:0:T:1:N:0:O:0	.	1,12,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:2:G:0:T:51:N:0:O:0	.	0,37,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	0,20,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1882	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:49:T:1:N:0:O:0	.	0,21,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	1897	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:42:C:0:G:1:T:0:N:0:O:3	.	0,21,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1943	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:107:G:0:T:3:N:0:O:1	.	0,63,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.043478260869565216	.	A:0:C:128:G:0:T:6:N:0:O:4	.	4,74,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2028	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:108:G:0:T:3:N:0:O:1	.	0,67,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2029	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:3:G:0:T:93:N:0:O:1	.	0,51,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2095	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:1:C:0:G:86:T:2:N:0:O:0	.	0,35,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.05084745762711865	.	A:0:C:112:G:0:T:6:N:0:O:0	.	1,50,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2173	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.061946902654867256	.	A:0:C:0:G:105:T:7:N:0:O:1	.	2,48,5,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:79:T:0:N:0:O:2	.	2,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	2407	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	0,26,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2559	C	T	C	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.029239766081871343	.	A:0:C:165:G:0:T:5:N:0:O:1	.	3,89,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2586	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:0:C:0:G:2:T:26:N:0:O:1	.	2,13,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2597	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,9,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2691	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:34:G:0:T:1:N:0:O:1	.	1,12,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:1:G:0:T:0:N:0:O:0	.	1,13,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2723	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:28:G:0:T:1:N:0:O:0	.	0,11,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	2777	A	T	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:22:C:0:G:0:T:1:N:0:O:1	.	1,5,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2782	G	A	G	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:1:C:0:G:26:T:0:N:0:O:0	.	0,10,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2803	T	A	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:0:T:34:N:0:O:0	.	1,14,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2809	G	A	G	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:0:G:32:T:0:N:0:O:0	.	0,14,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	2899	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,55,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3036	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:81:N:0:O:5	.	0,53,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3037	C	T	C	16	ignore low frequency variant	Pass	True	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,53,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	3053	G	T	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:98:T:3:N:0:O:0	.	2,52,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:101:G:0:T:3:N:0:O:4	.	1,58,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	3394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.034482758620689655	.	A:140:C:0:G:5:T:0:N:0:O:0	.	5,43,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3395	G	A	G	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.02631578947368421	.	A:4:C:0:G:148:T:0:N:0:O:0	.	4,48,0,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:59:C:0:G:0:T:2:N:0:O:1	.	2,28,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:49:C:0:G:1:T:0:N:0:O:1	.	1,2,0,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3515	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.08333333333333333	.	A:0:C:41:G:0:T:4:N:0:O:3	.	3,25,1,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3517	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:46:C:0:G:1:T:0:N:0:O:1	.	1,24,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.05714285714285714	.	A:0:C:33:G:0:T:2:N:0:O:0	.	0,26,2,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3580	A	T	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:0:T:1:N:0:O:0	.	0,29,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3596	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:39:T:0:N:0:O:0	.	1,21,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3601	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:0:T:1:N:0:O:0	.	1,22,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3646	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	0,27,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:43:T:0:N:0:O:1	.	1,20,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3688	C	A	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:45:G:0:T:0:N:0:O:4	.	1,31,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3690	A	C	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:33:C:1:G:0:T:0:N:0:O:1	.	0,15,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3739	T	G	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:1:T:43:N:0:O:0	.	0,28,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3752	A	T	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:35:C:0:G:0:T:1:N:0:O:3	.	0,18,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,29,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	3785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,22,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.03731343283582089	.	A:5:C:0:G:0:T:118:N:0:O:11	.	5,68,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	3977	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:110:T:0:N:0:O:1	.	2,51,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	4008	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04032258064516129	.	A:0:C:5:G:0:T:112:N:0:O:7	.	3,68,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	4255	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:72:T:0:N:0:O:0	.	2,23,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:0:C:75:G:0:T:3:N:0:O:5	.	0,55,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	4638	A	T	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:126:C:1:G:0:T:3:N:0:O:0	.	2,60,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	4832	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.046875	.	A:0:C:121:G:0:T:6:N:0:O:1	.	4,63,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:93:G:0:T:2:N:0:O:9	.	0,78,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	4962	G	T	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:0:G:108:T:4:N:0:O:1	.	2,61,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	4993	C	T	C	16	ignore low frequency variant	Pass	False	False	True	249	.	20	.	0.024096385542168676	.	A:0:C:243:G:0:T:6:N:0:O:0	.	3,134,3,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:0:T:124:N:0:O:11	.	2,72,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5127	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:0:T:92:N:0:O:0	.	2,50,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:64:G:0:T:2:N:0:O:0	.	1,17,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5461	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.064	.	A:1:C:7:G:108:T:8:N:0:O:1	.	5,58,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5553	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:71:C:0:G:1:T:2:N:0:O:2	.	0,40,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5605	G	A	G	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.02092050209205021	.	A:5:C:0:G:210:T:0:N:0:O:24	.	5,116,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5627	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:2:T:0:N:0:O:0	.	2,39,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5717	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:115:G:0:T:5:N:0:O:0	.	4,65,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.08695652173913043	.	A:0:C:62:G:0:T:6:N:0:O:1	.	0,56,6,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:52:G:0:T:3:N:0:O:7	.	0,35,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.06666666666666667	.	A:0:C:4:G:0:T:56:N:0:O:0	.	0,49,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:3:G:0:T:65:N:0:O:2	.	0,59,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	5900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	268	.	20	.	0.029850746268656716	.	A:0:C:259:G:1:T:8:N:0:O:0	.	3,129,5,139	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.08139534883720931	.	A:0:C:78:G:0:T:7:N:0:O:1	.	0,59,7,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:101:G:0:T:3:N:0:O:0	.	1,49,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	6288	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:96:T:4:N:0:O:6	.	2,47,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:82:T:0:N:0:O:1	.	3,27,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6312	C	A	A	12	misc mixed variant	Check	False	True	True	100	.	20	.	0.58	.	A:58:C:5:G:0:T:0:N:0:O:37	.	48,86,10,14	78.059	1371.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:94:G:0:T:2:N:0:O:7	.	0,74,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6385	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,60,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	6386	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:4:G:0:T:93:N:0:O:0	.	1,61,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6387	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	0,60,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:97:G:0:T:3:N:0:O:1	.	0,58,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:98:N:0:O:1	.	0,66,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6620	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:131:N:0:O:0	.	2,68,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:0:G:3:T:105:N:0:O:4	.	0,63,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	0,57,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6762	C	T	C	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.0297029702970297	.	A:0:C:190:G:0:T:6:N:0:O:6	.	5,94,1,108	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.04326923076923077	.	A:186:C:0:G:9:T:4:N:0:O:9	.	9,82,0,126	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.05670103092783505	.	A:1:C:177:G:0:T:11:N:0:O:5	.	0,117,11,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	222	.	20	.	0.03153153153153153	.	A:212:C:0:G:7:T:0:N:0:O:3	.	7,91,0,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6829	T	A	T	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:4:C:0:G:0:T:185:N:0:O:9	.	4,100,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6830	A	C	A	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.02247191011235955	.	A:171:C:4:G:0:T:0:N:0:O:3	.	4,96,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6869	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:107:C:0:G:3:T:0:N:0:O:0	.	3,44,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:93:N:0:O:2	.	2,34,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	6990	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.06086956521739131	.	A:0:C:102:G:0:T:7:N:0:O:6	.	0,71,7,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:73:C:0:G:0:T:6:N:0:O:2	.	0,64,6,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:4:C:0:G:90:T:0:N:0:O:3	.	4,20,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	7564	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:99:G:0:T:4:N:0:O:24	.	4,87,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:80:G:0:T:2:N:0:O:25	.	0,84,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8144	G	C	G	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.03550295857988166	.	A:0:C:6:G:163:T:0:N:0:O:0	.	4,81,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:184:C:0:G:4:T:0:N:0:O:4	.	2,104,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8311	C	A	C	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.0	.	A:0:C:189:G:0:T:0:N:0:O:2	.	0,101,0,90	3.92	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8313	T	A	T	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.0	.	A:0:C:0:G:0:T:190:N:0:O:2	.	0,103,0,89	4.869	.	.	.	.	mismatch(m)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8664	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.06666666666666667	.	A:0:C:40:G:0:T:3:N:0:O:2	.	1,17,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8673	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:43:G:0:T:0:N:0:O:3	.	0,21,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8743	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,9,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8774	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:44:N:0:O:0	.	0,18,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8794	T	A	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:0:T:38:N:0:O:1	.	0,13,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8805	A	C	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:1:G:0:T:0:N:0:O:0	.	0,17,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8807	G	T	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.041666666666666664	.	A:0:C:0:G:45:T:2:N:0:O:1	.	1,19,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8830	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,13,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8832	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:46:G:0:T:1:N:0:O:0	.	1,19,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8835	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:42:N:0:O:1	.	0,19,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8854	T	C	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:1:G:0:T:23:N:0:O:0	.	0,15,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8871	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:0:G:1:T:46:N:0:O:0	.	1,22,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8872	G	C	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:48:T:0:N:0:O:1	.	1,22,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8873	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:43:G:0:T:2:N:0:O:0	.	0,21,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.07142857142857142	.	A:2:C:0:G:25:T:0:N:0:O:1	.	2,2,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8896	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.058823529411764705	.	A:0:C:2:G:0:T:32:N:0:O:0	.	1,18,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8898	A	C	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:1:G:0:T:0:N:0:O:0	.	0,18,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8899	T	G	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:1:T:38:N:0:O:0	.	0,16,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8900	G	A	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:1:C:0:G:38:T:0:N:0:O:1	.	1,11,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:37:G:0:T:1:N:0:O:0	.	0,19,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8947	C	T	C	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.027932960893854747	.	A:0:C:172:G:1:T:5:N:0:O:1	.	0,91,5,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	8986	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.028169014084507043	.	A:0:C:130:G:0:T:4:N:0:O:8	.	2,74,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.07526881720430108	.	A:7:C:0:G:0:T:80:N:0:O:6	.	6,23,1,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9199	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:91:N:0:O:1	.	0,50,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9255	G	C	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:1:G:25:T:0:N:0:O:0	.	0,10,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9256	T	A	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:0:T:20:N:0:O:0	.	0,11,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9335	G	A	G	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:21:T:0:N:0:O:0	.	0,9,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9367	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:0:T:1:N:0:O:0	.	1,11,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9379	T	G	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:0:G:1:T:25:N:0:O:0	.	0,9,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9388	G	T	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.08695652173913043	.	A:0:C:0:G:21:T:2:N:0:O:0	.	0,11,2,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9397	A	T	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:28:C:0:G:0:T:1:N:0:O:1	.	0,11,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9495	T	A	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:0:T:21:N:0:O:0	.	0,9,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9509	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:1:T:0:N:0:O:0	.	1,8,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9510	C	T	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:26:G:0:T:1:N:0:O:4	.	0,13,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9517	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:39:C:0:G:1:T:0:N:0:O:0	.	1,18,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9521	C	A	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:21:G:0:T:0:N:0:O:0	.	1,7,0,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	9548	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	1,16,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10154	G	T	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:0:C:0:G:137:T:4:N:0:O:0	.	1,74,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:5:C:1:G:0:T:110:N:0:O:1	.	0,70,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10396	G	T	G	16	ignore low frequency variant	Pass	False	False	True	282	.	20	.	0.02127659574468085	.	A:0:C:0:G:273:T:6:N:0:O:3	.	1,148,5,134	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10450	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:94:G:0:T:3:N:0:O:6	.	1,43,2,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10486	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:95:C:0:G:2:T:0:N:0:O:8	.	2,38,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10521	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.07518796992481203	.	A:0:C:0:G:122:T:10:N:0:O:1	.	8,72,2,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10564	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:97:C:0:G:2:T:0:N:0:O:6	.	2,43,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10567	T	C	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.05	.	A:0:C:7:G:0:T:130:N:0:O:3	.	2,72,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,30,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:96:T:3:N:0:O:1	.	3,61,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10738	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,10,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10750	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:21:N:0:O:1	.	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10756	T	G	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:0:G:1:T:19:N:0:O:0	.	0,12,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10775	C	A	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:22:G:0:T:0:N:0:O:0	.	0,13,1,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10821	A	C	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:23:C:1:G:0:T:0:N:0:O:1	.	1,14,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10839	T	A	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:0:T:21:N:0:O:0	.	0,11,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10853	T	A	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:0:T:20:N:0:O:0	.	1,13,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10867	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,11,0,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	10953	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:1:C:0:G:24:T:0:N:0:O:0	.	0,13,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	11083	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	50	.	20	.	0.42	.	A:0:C:0:G:0:T:21:N:0:O:29	.	7,36,14,14	70.329	911.3	.	.	.	.	mixed position	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	11347	T	C	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.06285714285714286	.	A:0:C:11:G:0:T:164:N:0:O:0	.	4,96,7,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	11426	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.04	.	A:0:C:0:G:46:T:2:N:0:O:2	.	0,23,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	11442	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:40:G:0:T:1:N:0:O:3	.	0,26,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	11497	C	A	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:45:G:0:T:0:N:0:O:1	.	0,14,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	11549	T	G	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:1:T:45:N:0:O:0	.	0,19,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	11556	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:39:C:0:G:1:T:0:N:0:O:1	.	0,12,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	11575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	1,27,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	12053	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:104:G:0:T:4:N:0:O:10	.	1,64,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:72:G:0:T:3:N:0:O:20	.	0,80,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.030864197530864196	.	A:5:C:0:G:154:T:0:N:0:O:3	.	5,36,0,126	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12165	C	T	C	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.02092050209205021	.	A:0:C:232:G:0:T:5:N:0:O:2	.	0,146,5,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:142:C:0:G:3:T:0:N:0:O:0	.	3,69,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:90:T:0:N:0:O:30	.	0,100,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.04918032786885246	.	A:1:C:115:G:0:T:6:N:0:O:0	.	6,51,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:106:G:0:T:5:N:0:O:3	.	5,50,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:3:G:0:T:0:N:0:O:1	.	3,71,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:99:T:0:N:0:O:3	.	3,30,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:137:G:0:T:3:N:0:O:4	.	0,103,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12464	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:137:T:0:N:0:O:1	.	3,53,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12522	G	T	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:0:G:22:T:1:N:0:O:0	.	1,10,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12570	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,11,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12590	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:22:T:0:N:0:O:0	.	1,13,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12606	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	1,8,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12611	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	1,12,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12615	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,13,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12652	A	G	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:1:T:0:N:0:O:0	.	1,12,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12666	A	C	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:1:G:0:T:0:N:0:O:0	.	0,11,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12668	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,13,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.025	.	A:149:C:0:G:4:T:0:N:0:O:7	.	4,72,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:0:C:4:G:0:T:154:N:0:O:1	.	0,77,4,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.030303030303030304	.	A:158:C:0:G:5:T:0:N:0:O:2	.	5,53,0,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02702702702702703	.	A:0:C:144:G:0:T:4:N:0:O:0	.	2,78,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:1:T:2:N:0:O:0	.	2,35,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.040983606557377046	.	A:5:C:1:G:0:T:105:N:0:O:11	.	5,67,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13285	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.06666666666666667	.	A:83:C:0:G:6:T:0:N:0:O:1	.	4,37,2,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13405	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:33:G:0:T:1:N:0:O:1	.	0,20,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:28:T:0:N:0:O:0	.	1,13,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13444	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,10,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13447	T	A	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:1:C:0:G:0:T:32:N:0:O:2	.	1,16,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13471	G	T	G	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:36:T:1:N:0:O:2	.	1,23,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13473	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:34:N:0:O:1	.	0,19,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13476	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,17,1,3	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:23:T:0:N:0:O:0	.	1,8,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.12	.	A:3:C:0:G:21:T:0:N:0:O:1	.	3,8,0,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13537	A	T	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:29:C:0:G:0:T:1:N:0:O:1	.	1,15,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13551	C	A	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:38:G:0:T:0:N:0:O:0	.	1,18,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13613	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.07142857142857142	.	A:26:C:0:G:2:T:0:N:0:O:0	.	2,10,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13730	C	T	T	17	accept high frequency variant	Pass	False	True	True	158	.	20	.	1.0	.	A:0:C:0:G:0:T:158:N:0:O:0	.	68,68,90,90	210.0	1185.5	.	.	.	.	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	13785	A	C	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:128:C:3:G:0:T:0:N:0:O:2	.	3,49,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13876	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:137:G:0:T:3:N:0:O:2	.	0,73,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13899	T	A	T	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.024691358024691357	.	A:4:C:0:G:0:T:154:N:0:O:4	.	1,80,3,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.058823529411764705	.	A:47:C:0:G:3:T:0:N:0:O:1	.	0,5,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14199	A	C	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:130:C:4:G:0:T:0:N:0:O:1	.	1,69,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14208	T	C	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:0:C:4:G:0:T:131:N:0:O:0	.	1,69,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14346	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:96:T:2:N:0:O:1	.	1,61,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14413	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	2,50,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	0,71,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:89:G:0:T:2:N:0:O:4	.	0,82,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	14755	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:134:G:0:T:4:N:0:O:0	.	2,70,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14913	C	A	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:22:G:0:T:0:N:0:O:0	.	0,8,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:0:C:2:G:1:T:37:N:0:O:0	.	0,24,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14934	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:37:C:0:G:1:T:0:N:0:O:2	.	0,20,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14935	G	T	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:0:G:39:T:1:N:0:O:1	.	0,21,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14936	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:44:C:1:G:0:T:0:N:0:O:0	.	1,26,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14937	C	T	C	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:1:C:46:G:0:T:2:N:0:O:8	.	0,34,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	14938	A	C	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:1:G:0:T:0:N:0:O:0	.	0,22,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14940	A	G	A	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:37:C:0:G:1:T:0:N:0:O:0	.	0,21,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14941	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,22,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14943	A	C	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:1:G:0:T:0:N:0:O:0	.	0,19,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:27:C:0:G:0:T:1:N:0:O:0	.	1,10,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14975	C	T	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:41:G:0:T:1:N:0:O:0	.	0,27,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14977	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	0,20,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14978	G	T	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:38:T:1:N:0:O:0	.	0,20,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	14980	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:36:G:0:T:1:N:0:O:3	.	0,25,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	14992	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	0,27,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15039	T	G	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:1:T:38:N:0:O:0	.	0,22,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15040	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	0,24,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15045	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:45:G:0:T:1:N:0:O:0	.	0,28,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15057	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:0:T:1:N:0:O:0	.	0,20,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15073	A	T	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:32:C:0:G:0:T:1:N:0:O:0	.	0,21,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.06451612903225806	.	A:2:C:0:G:27:T:0:N:0:O:2	.	2,10,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15081	C	T	C	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:39:G:0:T:1:N:0:O:0	.	0,24,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15082	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:31:C:0:G:1:T:0:N:0:O:1	.	1,16,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15083	T	A	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:0:T:30:N:0:O:0	.	1,14,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:43:N:0:O:2	.	0,25,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15103	C	G	C	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:27:G:1:T:0:N:0:O:2	.	0,27,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15104	G	T	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:0:G:24:T:1:N:0:O:0	.	1,15,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15105	C	T	C	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:39:G:0:T:1:N:0:O:1	.	1,19,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15149	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:33:C:0:G:0:T:1:N:0:O:0	.	0,16,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:119:C:0:G:3:T:0:N:0:O:0	.	0,61,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0410958904109589	.	A:0:C:139:G:0:T:6:N:0:O:1	.	2,68,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	15664	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:96:T:2:N:0:O:0	.	0,55,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:96:G:0:T:0:N:0:O:1	.	1,60,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15809	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:120:C:0:G:0:T:3:N:0:O:1	.	2,61,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15821	T	G	T	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.03676470588235294	.	A:0:C:0:G:5:T:131:N:0:O:0	.	0,77,5,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15865	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:127:G:0:T:3:N:0:O:0	.	2,66,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.01639344262295082	.	A:0:C:1:G:0:T:42:N:0:O:18	.	0,35,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.046511627906976744	.	A:0:C:40:G:0:T:2:N:0:O:1	.	0,20,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	15989	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.047244094488188976	.	A:0:C:121:G:0:T:6:N:0:O:0	.	3,62,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	16138	T	G	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:3:T:124:N:0:O:0	.	0,71,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	16575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.04294478527607362	.	A:0:C:156:G:0:T:7:N:0:O:0	.	5,82,2,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:119:G:0:T:3:N:0:O:0	.	0,78,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	16762	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.12173913043478261	.	A:0:C:98:G:0:T:14:N:0:O:3	.	6,47,8,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:77:T:0:N:0:O:8	.	2,22,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	16827	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,20,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:0:G:4:T:110:N:0:O:0	.	0,69,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.022222222222222223	.	A:4:C:0:G:125:T:1:N:0:O:50	.	0,96,4,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	16870	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:0:C:93:G:0:T:2:N:0:O:15	.	0,63,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:72:C:2:G:0:T:0:N:0:O:2	.	2,43,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17077	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:102:G:0:T:5:N:0:O:1	.	4,47,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.043478260869565216	.	A:7:C:0:G:151:T:0:N:0:O:3	.	7,27,0,134	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:2:T:0:N:0:O:1	.	2,10,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:0:T:78:N:0:O:5	.	2,16,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17201	T	A	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:0:G:0:T:96:N:0:O:5	.	2,37,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:101:C:0:G:4:T:0:N:0:O:0	.	4,36,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17339	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.05084745762711865	.	A:0:C:111:G:0:T:6:N:0:O:1	.	2,62,4,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	17410	C	T	C	16	ignore low frequency variant	Pass	False	False	True	299	.	20	.	0.020066889632107024	.	A:0:C:285:G:0:T:6:N:0:O:8	.	2,149,4,150	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	17436	C	G	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:133:G:3:T:0:N:0:O:0	.	0,78,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17458	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.031446540880503145	.	A:0:C:150:G:0:T:5:N:0:O:4	.	3,87,2,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.06930693069306931	.	A:0:C:93:G:0:T:7:N:0:O:1	.	0,76,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:4:C:0:G:106:T:0:N:0:O:0	.	4,38,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17572	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:97:T:0:N:0:O:1	.	3,53,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	173	.	20	.	0.017341040462427744	.	A:3:C:0:G:0:T:145:N:0:O:25	.	0,93,3,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:82:G:0:T:2:N:0:O:7	.	1,59,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	17738	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05982905982905983	.	A:0:C:104:G:0:T:7:N:0:O:6	.	2,36,5,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:24:C:0:G:1:T:0:N:0:O:1	.	1,14,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17834	T	A	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:0:T:21:N:0:O:0	.	1,14,0,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17878	C	A	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:20:G:0:T:0:N:0:O:0	.	0,13,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17897	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:19:C:0:G:1:T:0:N:0:O:2	.	1,9,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17917	T	A	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:1:C:0:G:0:T:21:N:0:O:0	.	1,11,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	17986	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	1,9,0,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.05102040816326531	.	A:0:C:87:G:0:T:5:N:0:O:6	.	4,77,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0189873417721519	.	A:3:C:0:G:0:T:128:N:0:O:27	.	1,49,2,109	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18303	C	T	C	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:0:C:188:G:1:T:4:N:0:O:1	.	3,87,1,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18305	T	C	T	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.03482587064676617	.	A:0:C:7:G:0:T:192:N:0:O:2	.	3,136,4,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18307	G	A	G	16	ignore low frequency variant	Pass	False	False	True	265	.	20	.	0.026415094339622643	.	A:7:C:0:G:256:T:0:N:0:O:2	.	2,125,5,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	291	.	20	.	0.024054982817869417	.	A:0:C:7:G:0:T:284:N:0:O:0	.	3,142,4,149	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18363	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:135:T:0:N:0:O:0	.	0,73,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:117:T:0:N:0:O:2	.	3,49,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18472	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.05732484076433121	.	A:0:C:146:G:0:T:9:N:0:O:2	.	5,81,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18526	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.06201550387596899	.	A:1:C:118:G:0:T:8:N:0:O:2	.	3,87,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18578	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:127:T:0:N:0:O:2	.	3,56,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18677	G	T	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.05263157894736842	.	A:0:C:0:G:108:T:6:N:0:O:0	.	4,57,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:84:C:0:G:2:T:0:N:0:O:2	.	2,27,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,30,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:64:T:0:N:0:O:0	.	2,18,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	18788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0761904761904762	.	A:0:C:96:G:0:T:8:N:0:O:1	.	5,46,3,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:84:T:0:N:0:O:2	.	5,15,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19192	T	C	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:0:C:4:G:0:T:133:N:0:O:9	.	1,70,3,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19395	T	G	T	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.03508771929824561	.	A:0:C:0:G:2:T:54:N:0:O:1	.	0,28,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19406	G	T	G	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.05357142857142857	.	A:0:C:0:G:52:T:3:N:0:O:1	.	2,27,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19442	T	A	T	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:1:C:0:G:0:T:47:N:0:O:8	.	0,32,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19453	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	1,24,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19476	A	G	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:47:C:0:G:1:T:0:N:0:O:3	.	1,14,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	19481	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:42:T:0:N:0:O:1	.	1,13,0,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:27:G:0:T:1:N:0:O:1	.	0,20,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	19486	G	A	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:1:C:0:G:39:T:0:N:0:O:1	.	0,28,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19495	C	A	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:1:C:49:G:0:T:0:N:0:O:0	.	1,21,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19518	G	T	G	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0196078431372549	.	A:0:C:0:G:49:T:1:N:0:O:1	.	0,23,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:115:C:0:G:0:T:3:N:0:O:0	.	0,66,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19859	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:124:G:0:T:3:N:0:O:0	.	1,72,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	19938	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,12,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20114	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:21:N:0:O:0	.	0,14,1,8	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20115	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:21:G:0:T:1:N:0:O:1	.	0,14,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20198	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:1:T:0:N:0:O:0	.	1,15,0,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20203	A	G	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:144:C:0:G:3:T:0:N:0:O:2	.	2,69,1,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20213	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:105:T:0:N:0:O:2	.	4,38,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.04310344827586207	.	A:0:C:111:G:0:T:5:N:0:O:0	.	2,59,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:113:G:0:T:0:N:0:O:1	.	0,62,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20791	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:68:T:1:N:0:O:0	.	2,23,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20792	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:75:G:0:T:3:N:0:O:13	.	3,36,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20831	C	T	C	16	ignore low frequency variant	Pass	False	False	True	286	.	20	.	0.04195804195804196	.	A:0:C:272:G:0:T:12:N:0:O:2	.	5,146,7,140	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:89:C:0:G:2:T:0:N:0:O:3	.	2,19,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:90:T:0:N:0:O:17	.	2,17,2,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:0:C:0:G:2:T:59:N:0:O:0	.	2,13,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.23333333333333334	.	A:0:C:0:G:19:T:7:N:0:O:4	.	0,21,7,9	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.12121212121212122	.	A:0:C:28:G:0:T:4:N:0:O:1	.	0,16,4,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21194	A	G	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:30:C:0:G:1:T:0:N:0:O:1	.	1,15,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21223	T	A	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:0:T:31:N:0:O:2	.	1,13,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:0:C:34:G:0:T:2:N:0:O:0	.	0,19,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21365	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,13,1,7	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21368	T	C	T	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:1:G:0:T:35:N:0:O:0	.	0,17,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21370	C	A	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:1:C:41:G:0:T:0:N:0:O:1	.	0,22,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21371	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:38:C:0:G:1:T:0:N:0:O:0	.	1,18,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21381	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:31:G:0:T:1:N:0:O:1	.	0,12,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21446	A	G	A	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.03571428571428571	.	A:54:C:0:G:2:T:0:N:0:O:0	.	2,19,0,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:42:C:0:G:1:T:0:N:0:O:3	.	1,10,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:2:C:0:G:46:T:0:N:0:O:1	.	2,8,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21711	C	T	C	16	ignore low frequency variant	Pass	False	False	True	264	.	20	.	0.026515151515151516	.	A:0:C:256:G:0:T:7:N:0:O:1	.	4,124,3,140	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:0:C:98:G:0:T:4:N:0:O:5	.	1,33,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21743	A	C	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:142:C:3:G:0:T:0:N:0:O:0	.	0,84,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.04504504504504504	.	A:0:C:101:G:0:T:5:N:0:O:5	.	0,82,5,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:0:C:4:G:0:T:104:N:0:O:2	.	0,83,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:3:C:0:G:134:T:0:N:0:O:10	.	3,56,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21922	T	A	T	16	ignore low frequency variant	Pass	False	False	True	161	.	20	.	0.024844720496894408	.	A:4:C:0:G:0:T:154:N:0:O:3	.	1,73,3,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	21998	C	T	C	16	ignore low frequency variant	Pass	False	False	True	234	.	20	.	0.03418803418803419	.	A:0:C:226:G:0:T:8:N:0:O:0	.	4,130,4,104	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	22067	G	T	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:0:G:141:T:4:N:0:O:0	.	2,72,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,39,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:73:T:0:N:0:O:0	.	0,38,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:96:N:0:O:0	.	2,41,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:118:T:3:N:0:O:0	.	0,86,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	22889	T	C	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:3:G:0:T:130:N:0:O:1	.	0,69,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	22960	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.0625	.	A:105:C:0:G:7:T:0:N:0:O:0	.	4,38,3,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	22993	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.057692307692307696	.	A:0:C:98:G:0:T:6:N:0:O:0	.	3,40,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23050	T	G	T	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.043478260869565216	.	A:0:C:3:G:6:T:129:N:0:O:0	.	4,75,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23076	A	T	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.04285714285714286	.	A:133:C:0:G:0:T:6:N:0:O:1	.	3,62,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23235	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:62:C:0:G:2:T:0:N:0:O:0	.	1,27,1,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23491	T	C	T	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:3:G:0:T:140:N:0:O:0	.	3,53,0,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,3,0,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23535	A	G	A	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:26:C:0:G:1:T:0:N:0:O:1	.	1,9,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23567	G	C	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:29:T:0:N:0:O:0	.	1,16,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23575	C	T	C	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:0:C:35:G:0:T:1:N:0:O:0	.	0,19,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	23578	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:0:G:1:T:33:N:0:O:1	.	1,23,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:36:C:0:G:1:T:0:N:0:O:0	.	1,19,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23593	G	A	G	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:1:C:0:G:37:T:0:N:0:O:0	.	1,17,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23603	C	T	C	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:34:G:0:T:1:N:0:O:0	.	1,21,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:30:C:0:G:1:T:0:N:0:O:0	.	1,14,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23652	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,24,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23689	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.08823529411764706	.	A:0:C:3:G:0:T:31:N:0:O:0	.	2,17,1,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:39:C:0:G:1:T:0:N:0:O:1	.	1,23,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23713	T	A	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:0:T:38:N:0:O:0	.	1,22,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23714	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	1,23,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23753	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	0,24,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23754	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,25,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.05	.	A:38:C:0:G:2:T:0:N:0:O:0	.	2,22,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23799	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,25,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.04316546762589928	.	A:0:C:133:G:0:T:6:N:0:O:0	.	4,77,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.05154639175257732	.	A:0:C:92:G:0:T:5:N:0:O:0	.	0,69,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	23929	C	T	T	17	accept high frequency variant	Pass	False	True	True	113	.	20	.	0.9911504424778761	.	A:1:C:0:G:0:T:112:N:0:O:0	.	57,58,55,55	204.466	982.1	.	.	.	.	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:0:T:65:N:0:O:0	.	2,14,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24000	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	3,57,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:0:G:96:T:0:N:0:O:0	.	4,33,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24192	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,64,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:56:G:0:T:4:N:0:O:11	.	0,60,4,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24297	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:0:C:76:G:0:T:4:N:0:O:1	.	4,43,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:94:C:0:G:3:T:0:N:0:O:3	.	3,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24634	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:3:G:0:T:142:N:0:O:0	.	2,75,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24662	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:111:G:0:T:3:N:0:O:2	.	2,63,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:81:C:4:G:0:T:0:N:0:O:0	.	4,49,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.041666666666666664	.	A:0:C:0:G:113:T:5:N:0:O:2	.	1,49,4,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24836	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.05511811023622047	.	A:0:C:0:G:120:T:7:N:0:O:0	.	3,68,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24858	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0859375	.	A:0:C:1:G:112:T:11:N:0:O:4	.	5,56,6,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:1:G:3:T:92:N:0:O:1	.	0,63,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24967	C	T	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.08333333333333333	.	A:0:C:121:G:0:T:11:N:0:O:0	.	6,64,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	24982	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,30,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	25149	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:102:G:0:T:3:N:0:O:3	.	1,64,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:89:C:0:G:3:T:0:N:0:O:11	.	3,28,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25413	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:111:G:0:T:3:N:0:O:3	.	2,60,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:97:C:0:G:3:T:0:N:0:O:3	.	3,38,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25511	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:105:G:0:T:3:N:0:O:1	.	2,62,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	25672	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:82:G:0:T:2:N:0:O:15	.	2,67,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:3:G:70:T:0:N:0:O:3	.	3,9,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:86:G:0:T:3:N:0:O:11	.	3,44,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.07272727272727272	.	A:48:C:4:G:0:T:0:N:0:O:3	.	0,31,4,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:79:C:0:G:2:T:0:N:0:O:2	.	2,29,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:92:G:0:T:3:N:0:O:1	.	0,58,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25851	T	A	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:0:T:88:N:0:O:1	.	2,35,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:91:C:0:G:3:T:0:N:0:O:2	.	3,36,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,26,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:2:T:0:N:0:O:1	.	1,69,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	25976	C	T	C	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:30:G:0:T:1:N:0:O:1	.	0,20,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26005	A	T	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:21:C:0:G:0:T:1:N:0:O:0	.	0,13,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26045	A	C	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:1:G:0:T:0:N:0:O:0	.	1,8,0,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26070	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:1:T:0:N:0:O:0	.	1,17,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26119	C	T	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:21:G:1:T:1:N:0:O:0	.	1,7,0,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26120	A	C	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:1:G:0:T:0:N:0:O:0	.	1,13,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,17,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26152	G	C	G	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:24:T:0:N:0:O:0	.	1,9,0,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26173	G	T	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:0:G:27:T:1:N:0:O:0	.	0,15,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26205	T	C	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:1:G:0:T:28:N:0:O:0	.	0,16,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,66,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.014705882352941176	.	A:0:C:94:G:0:T:2:N:0:O:40	.	0,113,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,65,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26577	C	T	C	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.020833333333333332	.	A:0:C:187:G:0:T:4:N:0:O:1	.	3,105,1,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:105:C:0:G:0:T:3:N:0:O:2	.	3,31,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.06315789473684211	.	A:6:C:0:G:88:T:0:N:0:O:1	.	6,14,0,81	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26713	G	T	G	16	ignore low frequency variant	Pass	False	False	True	211	.	20	.	0.018957345971563982	.	A:0:C:0:G:178:T:4:N:0:O:29	.	4,127,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:119:G:0:T:3:N:0:O:0	.	0,94,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26801	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.075	.	A:0:C:144:G:0:T:12:N:0:O:4	.	6,95,6,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	26836	G	A	G	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:4:C:0:G:155:T:0:N:0:O:0	.	1,91,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03821656050955414	.	A:0:C:149:G:0:T:6:N:0:O:2	.	4,81,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:36:N:0:O:8	.	0,39,1,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26908	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:42:N:0:O:3	.	0,16,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	26990	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.04081632653061224	.	A:42:C:0:G:2:T:0:N:0:O:5	.	2,16,0,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27083	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,13,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:0:C:42:G:0:T:2:N:0:O:1	.	0,26,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27106	C	A	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:44:G:0:T:0:N:0:O:1	.	0,27,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27176	T	C	T	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.03664921465968586	.	A:0:C:7:G:0:T:182:N:0:O:2	.	4,101,3,90	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27378	G	A	G	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.023809523809523808	.	A:4:C:0:G:160:T:0:N:0:O:4	.	4,76,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27407	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	1,86,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	27589	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:81:T:2:N:0:O:4	.	0,39,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:58:C:0:G:3:T:0:N:0:O:1	.	3,26,0,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:3:C:58:G:0:T:0:N:0:O:1	.	2,34,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:77:C:0:G:0:T:2:N:0:O:25	.	2,68,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27791	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:79:G:0:T:2:N:0:O:22	.	0,62,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27801	T	C	T	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:2:G:0:T:63:N:0:O:0	.	0,40,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	27849	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:115:G:0:T:4:N:0:O:1	.	1,55,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28147	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:1:C:84:G:0:T:3:N:0:O:12	.	0,79,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:4:C:0:G:1:T:81:N:0:O:2	.	0,35,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28278	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.05405405405405406	.	A:0:C:101:G:1:T:6:N:0:O:3	.	0,72,6,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:1:T:96:N:0:O:5	.	1,67,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28311	C	T	T	17	accept high frequency variant	Pass	False	True	True	88	.	20	.	0.9886363636363636	.	A:0:C:1:G:0:T:87:N:0:O:0	.	67,68,20,20	241.28	1898.3	.	.	.	.	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	28320	C	T	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:142:G:0:T:3:N:0:O:2	.	0,76,3,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:94:C:0:G:0:T:3:N:0:O:5	.	3,19,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28568	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,37,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28573	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:97:C:0:G:0:T:3:N:0:O:1	.	2,57,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28623	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:104:G:0:T:3:N:0:O:6	.	1,58,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28628	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:98:T:2:N:0:O:0	.	1,46,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:95:C:0:G:4:T:0:N:0:O:1	.	4,32,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:111:G:0:T:3:N:0:O:2	.	0,66,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:95:T:0:N:0:O:3	.	3,19,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:26:T:0:N:0:O:1	.	1,2,0,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:42:T:0:N:0:O:1	.	1,24,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29072	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:43:T:0:N:0:O:0	.	1,26,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29075	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	1,22,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,23,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29084	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:41:C:0:G:0:T:1:N:0:O:1	.	1,24,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29094	T	G	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:0:G:1:T:41:N:0:O:4	.	0,38,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29096	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:44:T:1:N:0:O:0	.	1,25,0,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29101	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,24,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.06	.	A:3:C:44:G:0:T:0:N:0:O:3	.	3,34,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29123	G	A	G	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:1:C:0:G:22:T:0:N:0:O:0	.	1,6,0,17	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29131	T	G	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:0:C:0:G:2:T:52:N:0:O:12	.	1,33,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29141	G	A	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:1:C:0:G:44:T:0:N:0:O:0	.	1,31,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:47:N:0:O:1	.	0,33,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29170	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	1,25,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29191	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:40:C:1:G:0:T:0:N:0:O:4	.	0,19,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29254	G	A	G	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:42:T:0:N:0:O:1	.	1,21,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29271	A	T	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:0:T:1:N:0:O:1	.	1,29,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	54	.	20	.	0.037037037037037035	.	A:51:C:0:G:2:T:0:N:0:O:1	.	0,3,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:112:T:0:N:0:O:3	.	3,21,0,97	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:102:T:0:N:0:O:18	.	3,31,0,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	29592	C	T	C	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.060240963855421686	.	A:0:C:153:G:0:T:10:N:0:O:3	.	5,79,5,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00123	artic-pipeline	NB09	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	335	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	10527	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	159	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00123	artic-pipeline	NB09	MN908947.3	29742	G	N	N	19	ambiguous base at key position	Pass	.	False	False	6	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	66	C	T	C	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:36:G:0:T:1:N:0:O:0	.	0,8,1,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	76	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:30:N:0:O:2	.	0,10,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	77	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,8,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	83	T	A	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:0:T:48:N:0:O:0	.	0,7,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	120	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,9,1,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	147	C	T	C	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.043478260869565216	.	A:0:C:43:G:0:T:2:N:0:O:1	.	0,9,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	164	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:46:G:0:T:1:N:0:O:1	.	0,8,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	177	T	G	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:0:C:0:G:1:T:33:N:0:O:1	.	0,9,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	0,7,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:48:G:0:T:1:N:0:O:1	.	0,5,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	227	G	A	G	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:1:C:0:G:47:T:0:N:0:O:1	.	1,2,0,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	46	.	20	.	0.9565217391304348	.	A:0:C:0:G:0:T:44:N:0:O:2	.	3,5,41,41	70.0	1302.5	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	252	G	A	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:47:T:0:N:0:O:0	.	0,6,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:48:G:0:T:1:N:0:O:0	.	0,6,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	279	T	G	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:0:G:1:T:42:N:0:O:1	.	0,4,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:81:N:0:O:8	.	1,28,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.03546099290780142	.	A:135:C:0:G:5:T:0:N:0:O:1	.	5,47,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	833	T	C	C	17	accept high frequency variant	Pass	False	True	True	76	.	20	.	0.9605263157894737	.	A:0:C:73:G:0:T:3:N:0:O:0	.	35,36,38,40	346.227	696.3	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9852941176470589	.	A:0:C:0:G:0:T:134:N:0:O:2	.	67,69,67,67	350.0	1561.2	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	1161	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:81:T:0:N:0:O:4	.	2,18,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	3,22,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1338	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:114:G:3:T:0:N:0:O:2	.	3,49,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:0:C:112:G:0:T:4:N:0:O:1	.	0,68,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:83:G:2:T:0:N:0:O:7	.	2,33,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1595	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:3:C:0:G:107:T:0:N:0:O:5	.	3,54,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	1626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:86:N:0:O:1	.	0,53,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:73:G:0:T:3:N:0:O:6	.	0,32,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1629	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:74:C:3:G:0:T:0:N:0:O:0	.	1,42,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:4:G:0:T:92:N:0:O:4	.	0,47,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:63:C:0:G:2:T:0:N:0:O:0	.	1,9,1,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.036231884057971016	.	A:5:C:0:G:118:T:0:N:0:O:15	.	4,62,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.11578947368421053	.	A:11:C:0:G:83:T:0:N:0:O:1	.	11,30,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	119	.	20	.	0.7394957983193278	.	A:0:C:0:G:0:T:88:N:0:O:31	.	49,80,39,39	338.474	1463.0	.	.	.	.	mixed position	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	3140	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:134:G:0:T:0:N:0:O:0	.	0,64,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:79:T:2:N:0:O:5	.	0,58,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	3200	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:2:G:0:T:98:N:0:O:6	.	2,35,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3263	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:1:N:0:O:0	.	2,34,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:80:G:0:T:2:N:0:O:2	.	0,55,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:0:C:77:G:0:T:4:N:0:O:3	.	0,49,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:31:C:0:G:1:T:0:N:0:O:1	.	0,0,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:0:T:3:N:0:O:1	.	0,86,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:0:G:3:T:71:N:0:O:13	.	1,44,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.060240963855421686	.	A:5:C:0:G:77:T:0:N:0:O:1	.	0,50,5,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:75:G:0:T:2:N:0:O:1	.	0,68,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:74:G:0:T:3:N:0:O:1	.	0,67,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	3905	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:96:N:0:O:1	.	0,64,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:97:G:0:T:2:N:0:O:7	.	0,74,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	4249	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,47,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.023255813953488372	.	A:1:C:187:G:0:T:5:N:0:O:22	.	0,136,5,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:93:C:0:G:0:T:3:N:0:O:1	.	0,53,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:3:T:117:N:0:O:1	.	0,70,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	5102	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,66,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:0:G:0:T:2:N:0:O:0	.	2,15,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:75:G:0:T:3:N:0:O:0	.	2,15,1,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,26,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	5436	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:115:C:0:G:3:T:0:N:0:O:2	.	3,47,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.024390243902439025	.	A:0:C:199:G:0:T:5:N:0:O:1	.	0,123,5,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.125	.	A:0:C:68:G:0:T:10:N:0:O:2	.	0,65,10,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:0:C:5:G:0:T:77:N:0:O:0	.	0,55,5,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.08139534883720931	.	A:0:C:78:G:0:T:7:N:0:O:1	.	0,61,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,51,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:0:C:2:G:0:T:97:N:0:O:11	.	0,55,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:112:G:0:T:3:N:0:O:1	.	3,62,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:91:G:0:T:2:N:0:O:5	.	0,72,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:77:T:0:N:0:O:1	.	2,34,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	6306	G	T	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:1:C:0:G:78:T:2:N:0:O:3	.	1,25,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6319	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,56,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:96:N:0:O:4	.	0,73,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:95:G:0:T:2:N:0:O:4	.	0,73,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6428	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:91:G:0:T:2:N:0:O:4	.	1,34,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:98:N:0:O:1	.	0,65,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6493	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:107:C:0:G:3:T:0:N:0:O:1	.	3,40,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:0:G:4:T:101:N:0:O:6	.	0,61,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.0380952380952381	.	A:198:C:0:G:8:T:0:N:0:O:4	.	8,89,0,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:71:C:0:G:0:T:2:N:0:O:2	.	0,64,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	7229	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:86:T:0:N:0:O:0	.	2,30,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.07792207792207792	.	A:6:C:0:G:70:T:0:N:0:O:1	.	6,12,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	7598	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:96:N:0:O:1	.	0,59,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	7606	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:0:T:3:N:0:O:0	.	3,64,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:2:G:0:T:95:N:0:O:8	.	0,59,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:99:C:0:G:4:T:0:N:0:O:1	.	4,34,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	7998	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:0:C:131:G:0:T:3:N:0:O:2	.	0,79,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	7999	T	C	T	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:3:G:0:T:125:N:0:O:3	.	0,76,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	8469	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	0,4,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:4:G:0:T:101:N:0:O:0	.	0,57,4,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:5:C:0:G:69:T:0:N:0:O:2	.	5,9,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.06896551724137931	.	A:6:C:1:G:0:T:77:N:0:O:3	.	6,30,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:5:C:0:G:102:T:0:N:0:O:2	.	5,41,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	9539	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.027586206896551724	.	A:0:C:139:G:0:T:4:N:0:O:2	.	0,130,4,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	9712	C	A	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:3:C:122:G:0:T:0:N:0:O:12	.	1,61,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:1:C:86:G:0:T:2:N:0:O:12	.	0,73,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:3:C:0:G:0:T:111:N:0:O:2	.	0,64,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	10305	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:0:T:2:N:0:O:0	.	2,41,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:3:C:0:G:71:T:1:N:0:O:2	.	3,17,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	10464	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:75:C:0:G:2:T:1:N:0:O:3	.	2,32,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:0:C:98:G:0:T:5:N:0:O:1	.	0,69,5,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:0:G:4:T:108:N:0:O:6	.	0,60,4,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:2:C:93:G:0:T:0:N:0:O:14	.	2,57,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	11074	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.013986013986013986	.	A:0:C:77:G:0:T:2:N:0:O:64	.	1,133,1,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:0:C:0:G:126:T:4:N:0:O:71	.	0,88,4,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:53:C:0:G:2:T:0:N:0:O:0	.	0,40,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:72:G:0:T:2:N:0:O:21	.	0,82,2,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:83:T:0:N:0:O:5	.	5,26,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	12494	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:112:N:0:O:1	.	0,66,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:69:C:0:G:2:T:0:N:0:O:4	.	2,30,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:78:G:0:T:3:N:0:O:1	.	0,64,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	12855	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	1,44,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	12856	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:1:G:0:T:106:N:0:O:8	.	1,71,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.0641025641025641	.	A:5:C:0:G:72:T:0:N:0:O:1	.	5,22,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:4:C:0:G:100:T:0:N:0:O:3	.	4,51,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13425	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,46,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:0:C:71:G:0:T:3:N:0:O:3	.	0,71,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.07526881720430108	.	A:7:C:0:G:83:T:0:N:0:O:3	.	7,28,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:100:G:0:T:0:N:0:O:6	.	3,51,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13660	A	C	C	15	new position with no illumina data	Check	False	True	True	201	.	20	.	0.8407960199004975	.	A:32:C:169:G:0:T:0:N:0:O:0	.	122,135,47,66	360.295	1326.6	.	.	.	.	.	0.15<maf<0.25	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13754	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:140:T:0:N:0:O:1	.	3,75,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.0625	.	A:42:C:0:G:3:T:0:N:0:O:3	.	0,7,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:97:C:0:G:3:T:0:N:0:O:1	.	3,32,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:84:G:0:T:2:N:0:O:5	.	0,74,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,69,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	94	.	20	.	0.9787234042553191	.	A:0:C:0:G:0:T:92:N:0:O:2	.	52,54,40,40	403.56	1266.5	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	14546	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:86:C:0:G:3:T:0:N:0:O:4	.	1,32,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	15011	A	C	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:124:C:3:G:0:T:0:N:0:O:0	.	3,57,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	2,35,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:3:G:0:T:71:N:0:O:0	.	0,66,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	16546	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:119:C:1:G:3:T:0:N:0:O:2	.	3,57,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	16741	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:0:G:98:T:2:N:0:O:4	.	1,68,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:67:T:0:N:0:O:4	.	2,14,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:94:N:0:O:4	.	0,67,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	16852	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:71:T:0:N:0:O:0	.	2,13,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	16989	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	1,50,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.05194805194805195	.	A:72:C:4:G:0:T:0:N:0:O:1	.	4,39,0,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:3:C:0:G:0:T:64:N:0:O:2	.	3,7,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:2:T:0:N:0:O:1	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:97:G:0:T:4:N:0:O:1	.	0,62,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17582	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:2:G:0:T:85:N:0:O:0	.	0,54,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:70:G:0:T:4:N:0:O:1	.	0,50,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:95:C:0:G:0:T:4:N:0:O:8	.	0,47,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.07207207207207207	.	A:8:C:0:G:102:T:0:N:0:O:1	.	0,66,8,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:83:G:0:T:3:N:0:O:3	.	0,70,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17943	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:2:T:0:N:0:O:0	.	1,36,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:71:T:1:N:0:O:1	.	2,20,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:4:C:0:G:0:T:112:N:0:O:19	.	3,42,1,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:0:G:3:T:85:N:0:O:0	.	3,29,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:0:G:72:T:0:N:0:O:0	.	2,22,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.058823529411764705	.	A:7:C:0:G:112:T:0:N:0:O:0	.	7,18,0,101	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:0:C:65:G:0:T:5:N:0:O:0	.	0,56,5,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:95:N:0:O:6	.	0,64,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	19989	T	G	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.056338028169014086	.	A:0:C:0:G:4:T:66:N:0:O:1	.	0,35,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:72:C:0:G:2:T:0:N:0:O:0	.	2,19,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	20677	C	A	C	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.023809523809523808	.	A:4:C:161:G:0:T:0:N:0:O:3	.	0,73,4,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0594059405940594	.	A:92:C:0:G:6:T:0:N:0:O:3	.	6,33,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:60:C:0:G:2:T:0:N:0:O:0	.	1,3,1,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:5:C:0:G:88:T:0:N:0:O:11	.	4,21,1,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:0:G:82:T:5:N:0:O:8	.	0,67,5,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:0:C:100:G:0:T:5:N:0:O:0	.	0,61,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,39,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	0,74,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:84:G:0:T:2:N:0:O:2	.	0,53,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:96:C:0:G:0:T:2:N:0:O:1	.	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:4:G:0:T:112:N:0:O:0	.	0,72,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:2:G:0:T:0:N:0:O:0	.	1,46,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21761	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:3:C:0:G:119:T:0:N:0:O:2	.	3,54,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:97:G:0:T:2:N:0:O:4	.	0,81,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,74,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:102:C:0:G:3:T:0:N:0:O:1	.	3,39,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.043795620437956206	.	A:6:C:0:G:120:T:0:N:0:O:11	.	6,69,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:0:G:117:T:2:N:0:O:0	.	3,54,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.06766917293233082	.	A:0:C:0:G:9:T:124:N:0:O:0	.	8,41,1,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	22522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	1,29,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	22650	C	T	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:120:G:0:T:3:N:0:O:0	.	0,76,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	22772	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	3,13,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	262	.	20	.	0.019083969465648856	.	A:0:C:0:G:5:T:220:N:0:O:37	.	0,150,5,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	135	.	20	.	0.8962962962962963	.	A:1:C:0:G:121:T:0:N:0:O:13	.	64,78,57,57	335.463	1590.1	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:0:G:2:T:0:N:0:O:0	.	2,7,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23533	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	2,24,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,56,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.06382978723404255	.	A:0:C:87:G:0:T:6:N:0:O:1	.	0,72,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:101:N:0:O:0	.	0,70,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23897	C	A	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:82:G:0:T:0:N:0:O:4	.	2,52,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23962	T	A	T	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02142857142857143	.	A:3:C:0:G:0:T:134:N:0:O:3	.	3,60,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.05442176870748299	.	A:139:C:0:G:0:T:8:N:0:O:0	.	7,71,1,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:7:C:0:G:0:T:78:N:0:O:0	.	7,29,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:5:C:0:G:87:T:0:N:0:O:2	.	5,21,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:87:T:0:N:0:O:1	.	3,20,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:70:T:0:N:0:O:2	.	4,10,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24395	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:94:G:0:T:2:N:0:O:2	.	0,50,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:4:C:117:G:0:T:1:N:0:O:1	.	4,67,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:138:C:0:G:0:T:3:N:0:O:9	.	3,95,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:91:C:2:G:0:T:0:N:0:O:1	.	2,55,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:74:G:0:T:2:N:0:O:2	.	0,73,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.04040404040404041	.	A:4:C:0:G:94:T:0:N:0:O:1	.	0,58,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	0,1,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25367	A	C	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:87:C:2:G:0:T:0:N:0:O:3	.	2,44,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,61,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:98:C:0:G:1:T:3:N:0:O:1	.	3,48,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:3:G:0:T:86:N:0:O:2	.	1,55,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,41,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:65:G:0:T:2:N:0:O:4	.	2,46,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:0:G:4:T:88:N:0:O:1	.	4,38,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	109	.	20	.	0.9908256880733946	.	A:0:C:0:G:0:T:108:N:0:O:1	.	49,50,59,59	280.0	1926.3	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:98:G:0:T:0:N:0:O:7	.	3,56,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25798	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:1:G:0:T:0:N:0:O:0	.	1,36,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.05555555555555555	.	A:32:C:2:G:0:T:0:N:0:O:2	.	0,22,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:86:G:0:T:4:N:0:O:2	.	1,68,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25840	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:97:G:1:T:3:N:0:O:2	.	0,62,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:68:C:0:G:0:T:2:N:0:O:3	.	0,58,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:95:G:0:T:4:N:0:O:3	.	3,54,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	26033	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	0,69,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:3:G:0:T:0:N:0:O:0	.	3,47,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:84:G:0:T:3:N:0:O:0	.	0,55,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:6:C:0:G:85:T:0:N:0:O:1	.	6,24,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.08125	.	A:0:C:147:G:0:T:13:N:0:O:0	.	0,130,13,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.054187192118226604	.	A:0:C:11:G:0:T:192:N:0:O:0	.	0,140,11,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26557	A	G	A	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.02030456852791878	.	A:186:C:0:G:4:T:0:N:0:O:7	.	4,61,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.045871559633027525	.	A:0:C:5:G:0:T:104:N:0:O:0	.	0,67,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:80:C:0:G:0:T:3:N:0:O:1	.	3,18,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:4:C:0:G:72:T:0:N:0:O:0	.	4,7,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:0:C:83:G:0:T:6:N:0:O:0	.	0,64,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:82:N:0:O:4	.	0,62,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	27083	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	1,31,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:85:T:0:N:0:O:1	.	4,27,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.10309278350515463	.	A:0:C:84:G:0:T:10:N:0:O:3	.	0,62,10,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	27515	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:87:C:0:G:2:T:0:N:0:O:7	.	2,25,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:78:C:0:G:4:T:0:N:0:O:0	.	4,26,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	27688	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:45:G:0:T:1:N:0:O:6	.	0,16,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	27964	C	T	T	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	0.9919354838709677	.	A:0:C:0:G:0:T:123:N:0:O:1	.	66,67,57,57	70.0	1656.2	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:89:C:0:G:0:T:2:N:0:O:2	.	1,38,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	28268	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:111:C:0:G:3:T:0:N:0:O:0	.	3,53,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	28761	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:96:C:3:G:0:T:0:N:0:O:0	.	3,40,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	0,53,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	28799	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:89:C:0:G:2:T:0:N:0:O:1	.	2,32,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	28804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	28840	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:0:T:124:N:0:O:2	.	0,64,3,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:5:C:0:G:81:T:0:N:0:O:0	.	5,14,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:82:G:0:T:0:N:0:O:11	.	3,58,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	29194	T	G	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:0:G:2:T:90:N:0:O:2	.	0,49,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	29197	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,40,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:2:G:0:T:80:N:0:O:1	.	0,51,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	29304	C	A	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:3:C:115:G:0:T:0:N:0:O:4	.	3,53,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00017	artic-pipeline	NB09	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	21133	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	302	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00017	artic-pipeline	NB09	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	128	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,5,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	218	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:20:G:0:T:1:N:0:O:0	.	0,5,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	19	.	20	.	0.9473684210526315	.	A:0:C:0:G:0:T:18:N:0:O:1	.	4,5,14,14	70.0	1403.8	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:105:N:0:O:8	.	3,33,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:0:C:3:G:0:T:112:N:0:O:1	.	0,60,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,5,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1047	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:0:G:2:T:0:N:0:O:1	.	0,25,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	138	.	20	.	1.0	.	A:0:C:0:G:0:T:138:N:0:O:0	.	72,72,66,66	420.0	1471.8	.	.	.	.	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:114:G:0:T:0:N:0:O:3	.	3,54,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1127	G	T	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:0:G:134:T:3:N:0:O:1	.	3,70,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1332	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	1,54,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:117:G:3:T:0:N:0:O:1	.	3,55,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:0:C:106:G:0:T:4:N:0:O:4	.	0,64,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1747	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,52,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:3:T:0:N:0:O:0	.	0,52,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:4:C:0:G:100:T:0:N:0:O:1	.	4,38,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	2305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,53,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	1,27,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	2575	T	C	T	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.029585798816568046	.	A:0:C:5:G:0:T:159:N:0:O:5	.	0,112,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:4:C:0:G:133:T:0:N:0:O:1	.	4,54,0,84	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.7142857142857143	.	A:0:C:0:G:0:T:90:N:0:O:36	.	47,83,43,43	57.776	1445.7	.	.	.	.	mixed position	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	3080	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:96:T:0:N:0:O:3	.	1,35,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:0:G:83:T:2:N:0:O:1	.	0,29,2,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:115:N:0:O:1	.	0,70,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:1:C:0:G:81:T:3:N:0:O:9	.	0,63,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:85:G:0:T:4:N:0:O:4	.	0,57,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:49:C:0:G:0:T:2:N:0:O:0	.	2,28,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	3417	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	1,1,0,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,33,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	0,75,3,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:69:T:0:N:0:O:0	.	0,49,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	4073	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:90:G:0:T:2:N:0:O:2	.	0,70,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.02912621359223301	.	A:0:C:0:G:190:T:6:N:0:O:10	.	0,155,6,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	4371	G	A	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:4:C:0:G:183:T:0:N:0:O:1	.	0,150,4,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	4471	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:147:C:0:G:3:T:0:N:0:O:1	.	3,49,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	5101	A	T	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:0:T:2:N:0:O:0	.	0,60,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:0:T:2:N:0:O:0	.	2,15,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	5498	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:2:G:0:T:0:N:0:O:0	.	2,38,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:0:C:66:G:0:T:3:N:0:O:0	.	0,62,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,19,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:82:T:0:N:0:O:18	.	0,20,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6021	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,66,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.11363636363636363	.	A:0:C:78:G:0:T:10:N:0:O:0	.	0,59,10,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,57,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6148	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:0:G:2:T:92:N:0:O:10	.	0,76,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	0,65,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6262	T	A	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:1:G:0:T:97:N:0:O:4	.	1,68,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6272	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:111:N:0:O:0	.	0,65,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6691	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:110:N:0:O:4	.	0,63,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	6701	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,68,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	6726	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:87:G:0:T:3:N:0:O:0	.	0,55,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.10126582278481013	.	A:70:C:0:G:0:T:8:N:0:O:1	.	0,65,8,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	7215	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:110:C:0:G:5:T:0:N:0:O:3	.	5,47,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	7223	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:103:T:0:N:0:O:1	.	3,40,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:5:C:0:G:79:T:0:N:0:O:0	.	5,11,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:3:G:0:T:0:N:0:O:0	.	3,39,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,68,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	8850	T	G	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:0:G:2:T:96:N:0:O:13	.	0,74,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.07246376811594203	.	A:5:C:0:G:64:T:0:N:0:O:0	.	5,5,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9010	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:0:G:123:T:4:N:0:O:2	.	0,69,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:1:G:0:T:83:N:0:O:7	.	5,37,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.056074766355140186	.	A:6:C:0:G:100:T:0:N:0:O:1	.	6,43,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,66,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.045112781954887216	.	A:0:C:0:G:127:T:6:N:0:O:0	.	1,69,5,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:77:G:0:T:2:N:0:O:9	.	0,60,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9790	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:0:G:4:T:116:N:0:O:3	.	0,66,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9918	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,27,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:4:C:0:G:71:T:0:N:0:O:0	.	4,21,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:83:G:0:T:3:N:0:O:14	.	3,39,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	10148	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:92:G:0:T:2:N:0:O:0	.	0,49,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,24,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:94:N:0:O:4	.	0,36,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	10440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.05555555555555555	.	A:0:C:102:G:0:T:6:N:0:O:0	.	0,65,6,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	10464	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:89:C:0:G:2:T:0:N:0:O:3	.	2,33,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:106:C:0:G:4:T:0:N:0:O:0	.	4,40,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:103:G:0:T:5:N:0:O:0	.	0,70,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	11096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:45:N:0:O:0	.	0,41,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	11401	G	T	T	14	new position at high frequency	Pass	False	True	True	116	.	20	.	1.0	.	A:0:C:0:G:0:T:116:N:0:O:0	.	57,57,59,59	140.0	1870.2	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:110:C:0:G:0:T:5:N:0:O:2	.	5,47,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	11866	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:110:G:0:T:3:N:0:O:7	.	3,62,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	203	.	20	.	0.034482758620689655	.	A:0:C:0:G:132:T:7:N:0:O:64	.	1,82,6,121	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.0945945945945946	.	A:67:C:0:G:7:T:0:N:0:O:0	.	1,50,6,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:4:C:0:G:133:T:0:N:0:O:2	.	4,31,0,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12333	C	G	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:0:C:123:G:3:T:0:N:0:O:23	.	1,73,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:109:C:5:G:0:T:0:N:0:O:0	.	3,58,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12386	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	0,69,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12387	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:0:T:2:N:0:O:0	.	0,73,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:82:T:0:N:0:O:5	.	4,24,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12494	T	C	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:3:G:0:T:116:N:0:O:1	.	0,64,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:76:G:0:T:2:N:0:O:1	.	1,65,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12854	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:95:G:0:T:2:N:0:O:0	.	0,43,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	12925	T	A	T	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:3:C:0:G:0:T:126:N:0:O:19	.	3,88,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	12938	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,70,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:1:C:2:G:0:T:82:N:0:O:5	.	0,38,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13475	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,67,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.09090909090909091	.	A:0:C:70:G:0:T:7:N:0:O:0	.	0,66,7,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:71:G:0:T:2:N:0:O:1	.	2,39,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.06818181818181818	.	A:38:C:0:G:3:T:0:N:0:O:3	.	0,3,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13970	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	2,29,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:97:N:0:O:4	.	2,39,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	13974	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:106:C:0:G:3:T:0:N:0:O:10	.	2,42,1,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	14113	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,42,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	14289	T	G	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:0:G:3:T:111:N:0:O:0	.	0,70,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	102	.	20	.	0.9705882352941176	.	A:0:C:1:G:0:T:99:N:0:O:2	.	60,63,39,39	474.494	1264.5	.	.	.	.	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	14546	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:94:C:0:G:2:T:0:N:0:O:6	.	2,44,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	14580	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:101:T:0:N:0:O:3	.	3,42,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:99:G:0:T:4:N:0:O:2	.	0,68,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:96:G:0:T:2:N:0:O:8	.	0,77,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:92:T:0:N:0:O:0	.	3,28,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:2:T:0:N:0:O:0	.	0,46,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	15847	A	G	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:135:C:0:G:3:T:0:N:0:O:0	.	3,70,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.10344827586206896	.	A:0:C:52:G:0:T:6:N:0:O:0	.	0,30,6,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:92:G:0:T:3:N:0:O:2	.	0,67,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	16260	C	T	T	17	accept high frequency variant	Pass	False	True	True	108	.	20	.	0.9814814814814815	.	A:1:C:0:G:0:T:106:N:0:O:1	.	48,49,58,59	210.0	968.4	.	.	.	.	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:3:T:0:N:0:O:0	.	2,44,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:85:T:0:N:0:O:6	.	2,20,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:1:T:0:N:0:O:0	.	0,9,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17099	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:182:C:0:G:4:T:0:N:0:O:10	.	4,65,0,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.052083333333333336	.	A:10:C:0:G:173:T:0:N:0:O:9	.	10,54,0,138	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:66:C:0:G:3:T:0:N:0:O:1	.	3,8,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.06666666666666667	.	A:5:C:0:G:0:T:70:N:0:O:0	.	5,12,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:0:G:3:T:0:N:0:O:0	.	2,35,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:4:C:0:G:92:T:0:N:0:O:0	.	4,29,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17571	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,60,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17666	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:109:C:0:G:0:T:3:N:0:O:7	.	0,62,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.026845637583892617	.	A:0:C:141:G:0:T:4:N:0:O:4	.	0,107,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.08411214953271028	.	A:9:C:0:G:96:T:0:N:0:O:2	.	0,65,9,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17943	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	0,40,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:90:C:0:G:2:T:0:N:0:O:4	.	2,29,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:69:T:0:N:0:O:1	.	2,23,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18002	G	A	G	16	ignore low frequency variant	Pass	False	False	True	192	.	20	.	0.036458333333333336	.	A:7:C:0:G:184:T:0:N:0:O:1	.	7,80,0,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18031	A	G	A	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.025252525252525252	.	A:193:C:0:G:5:T:0:N:0:O:0	.	5,82,0,116	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:0:C:0:G:3:T:68:N:0:O:1	.	0,19,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:82:G:0:T:2:N:0:O:9	.	2,17,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18467	G	C	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:72:T:0:N:0:O:0	.	2,63,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18675	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:113:C:0:G:3:T:0:N:0:O:1	.	3,51,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.0379746835443038	.	A:76:C:0:G:3:T:0:N:0:O:0	.	3,26,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:3:C:0:G:88:T:0:N:0:O:1	.	3,30,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:0:G:4:T:93:N:0:O:0	.	4,45,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.04032258064516129	.	A:5:C:0:G:117:T:0:N:0:O:2	.	5,26,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	19332	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:2:T:94:N:0:O:2	.	0,43,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,30,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.05714285714285714	.	A:0:C:65:G:0:T:4:N:0:O:1	.	0,52,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	171	.	20	.	0.017543859649122806	.	A:3:C:0:G:0:T:135:N:0:O:33	.	0,75,3,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	19756	A	T	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:100:C:0:G:0:T:3:N:0:O:2	.	0,62,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	19984	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	1,29,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:135:T:0:N:0:O:4	.	3,59,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	20931	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:78:T:0:N:0:O:0	.	2,30,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	3,45,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:2:C:0:G:93:T:0:N:0:O:12	.	1,24,1,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.10112359550561797	.	A:0:C:0:G:74:T:9:N:0:O:6	.	0,63,9,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21210	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,32,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:98:G:0:T:3:N:0:O:0	.	0,67,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21433	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:96:T:0:N:0:O:2	.	3,50,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:2:T:0:N:0:O:0	.	2,5,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.09090909090909091	.	A:8:C:0:G:80:T:0:N:0:O:0	.	8,16,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:4:C:0:G:103:T:0:N:0:O:4	.	4,39,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	22036	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:120:C:0:G:4:T:1:N:0:O:0	.	4,42,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:120:T:0:N:0:O:0	.	3,59,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	22410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:67:T:0:N:0:O:3	.	0,37,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	22557	T	A	T	16	ignore low frequency variant	Pass	False	False	True	207	.	20	.	0.024154589371980676	.	A:5:C:0:G:0:T:201:N:0:O:1	.	5,89,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.030303030303030304	.	A:0:C:0:G:160:T:5:N:0:O:0	.	0,114,5,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	22661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:4:C:0:G:112:T:1:N:0:O:2	.	4,41,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:101:G:0:T:3:N:0:O:14	.	1,98,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	135	.	20	.	0.9481481481481482	.	A:1:C:0:G:128:T:0:N:0:O:6	.	70,77,58,58	272.247	1636.0	.	.	.	.	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	23532	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:82:C:0:G:2:T:1:N:0:O:0	.	2,18,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:81:T:0:N:0:O:4	.	3,18,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:96:C:0:G:3:T:0:N:0:O:0	.	3,43,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23836	T	A	T	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:0:T:64:N:0:O:0	.	2,18,0,48	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.17346938775510204	.	A:0:C:81:G:0:T:17:N:0:O:0	.	0,73,17,25	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23904	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,49,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.04827586206896552	.	A:138:C:0:G:0:T:7:N:0:O:0	.	7,72,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.0963855421686747	.	A:8:C:0:G:0:T:75:N:0:O:0	.	7,27,1,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	0,66,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24244	A	G	A	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:46:C:1:G:1:T:0:N:0:O:4	.	0,43,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24275	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:2:T:0:N:0:O:3	.	1,39,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:80:T:0:N:0:O:1	.	3,22,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:0:G:80:T:1:N:0:O:10	.	4,27,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24309	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,69,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24463	C	G	C	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:0:C:141:G:3:T:0:N:0:O:3	.	0,80,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:103:G:0:T:1:N:0:O:2	.	3,45,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02158273381294964	.	A:127:C:0:G:0:T:3:N:0:O:9	.	3,90,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.05555555555555555	.	A:0:C:66:G:0:T:4:N:0:O:2	.	0,66,4,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24719	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:68:G:0:T:2:N:0:O:6	.	0,73,2,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	3,39,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	37	.	20	.	0.02702702702702703	.	A:0:C:1:G:0:T:35:N:0:O:1	.	1,24,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:107:C:0:G:0:T:4:N:0:O:0	.	4,49,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:1:G:2:T:93:N:0:O:0	.	2,42,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	118	.	20	.	1.0	.	A:0:C:0:G:0:T:118:N:0:O:0	.	56,56,62,62	280.0	1826.5	.	.	.	.	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:66:C:2:G:0:T:0:N:0:O:1	.	1,25,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:82:G:0:T:2:N:0:O:5	.	1,39,1,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:4:C:82:G:0:T:0:N:0:O:50	.	4,45,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.06818181818181818	.	A:40:C:3:G:0:T:0:N:0:O:1	.	1,26,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:96:G:0:T:5:N:0:O:0	.	0,63,5,38	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:84:C:0:G:4:T:0:N:0:O:0	.	4,27,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:0:G:91:T:0:N:0:O:0	.	3,29,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,8,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26222	C	A	C	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:4:C:182:G:0:T:0:N:0:O:0	.	0,113,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	197	.	20	.	0.025380710659898477	.	A:0:C:190:G:0:T:5:N:0:O:2	.	0,129,5,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:0:C:76:G:0:T:2:N:0:O:35	.	0,102,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:44:N:0:O:1	.	0,41,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26455	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	1,31,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26456	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,35,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	26513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:138:C:0:G:3:T:0:N:0:O:1	.	2,72,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	26528	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:1:G:2:T:0:N:0:O:0	.	2,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26594	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	1,43,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26690	G	T	T	15	new position with no illumina data	Check	False	True	True	124	.	20	.	0.8870967741935484	.	A:0:C:1:G:0:T:110:N:0:O:13	.	55,68,55,56	64.466	1672.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.06741573033707865	.	A:82:C:0:G:0:T:6:N:0:O:1	.	6,22,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	0,65,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:86:N:0:O:12	.	0,79,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27074	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:105:T:0:N:0:O:0	.	2,53,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:2:T:0:N:0:O:2	.	2,33,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:75:T:0:N:0:O:1	.	2,20,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:96:G:0:T:2:N:0:O:2	.	0,61,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27664	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:94:T:0:N:0:O:3	.	3,29,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.06521739130434782	.	A:6:C:84:G:0:T:0:N:0:O:2	.	6,41,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.03184713375796178	.	A:118:C:0:G:0:T:5:N:0:O:34	.	5,86,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:85:T:0:N:0:O:3	.	2,16,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27913	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:0:T:123:N:0:O:3	.	0,71,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	27914	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:113:C:0:G:3:T:0:N:0:O:4	.	0,53,3,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	28821	C	A	A	17	accept high frequency variant	Pass	False	True	True	104	.	20	.	0.9903846153846154	.	A:103:C:0:G:0:T:1:N:0:O:0	.	61,62,42,42	419.237	1737.2	.	.	.	.	.	.	.	.	.
MDHP-00127	artic-pipeline	NB01	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.08045977011494253	.	A:7:C:0:G:79:T:0:N:0:O:1	.	7,19,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	29047	T	C	T	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:2:G:0:T:70:N:0:O:0	.	0,66,2,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:69:T:0:N:0:O:1	.	2,4,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:2:C:95:G:0:T:1:N:0:O:5	.	2,54,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	29133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,49,0,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	3,29,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	228	.	20	.	0.02631578947368421	.	A:222:C:0:G:6:T:0:N:0:O:0	.	6,95,0,133	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00127	artic-pipeline	NB01	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	149	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	92	C	T	C	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.09523809523809523	.	A:0:C:19:G:0:T:2:N:0:O:0	.	0,10,2,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,10,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:1:G:0:T:32:N:0:O:0	.	0,11,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	158	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:31:C:0:G:1:T:0:N:0:O:3	.	1,10,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	171	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:20:G:0:T:1:N:0:O:1	.	0,8,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	197	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:25:G:0:T:1:N:0:O:1	.	1,7,0,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	226	A	C	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:1:G:0:T:0:N:0:O:0	.	1,3,0,18	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	233	C	T	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:0:T:1:N:0:O:0	.	0,7,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	234	T	C	T	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:1:G:0:T:19:N:0:O:0	.	0,5,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	18	.	20	.	0.8888888888888888	.	A:0:C:0:G:0:T:16:N:0:O:2	.	4,6,12,12	490.0	1119.7	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.034482758620689655	.	A:0:C:5:G:0:T:140:N:0:O:0	.	0,91,5,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	912	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:83:G:0:T:5:N:0:O:2	.	2,16,3,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1048	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,16,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	135	.	20	.	0.9925925925925926	.	A:0:C:1:G:0:T:134:N:0:O:0	.	67,67,67,68	420.0	1492.0	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	1319	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:93:T:0:N:0:O:2	.	2,28,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:102:G:0:T:3:N:0:O:1	.	0,62,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1730	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:97:T:0:N:0:O:2	.	1,56,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,65,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1818	A	G	A	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:40:C:0:G:1:T:0:N:0:O:0	.	0,0,1,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1819	A	G	A	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.05128205128205128	.	A:37:C:0:G:2:T:0:N:0:O:0	.	0,0,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1957	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	3,38,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:4:C:0:G:82:T:0:N:0:O:0	.	4,40,0,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2189	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:89:G:0:T:2:N:0:O:2	.	1,67,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:97:T:0:N:0:O:1	.	3,33,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:0:T:92:N:0:O:0	.	1,52,1,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.03355704697986577	.	A:144:C:5:G:0:T:0:N:0:O:0	.	5,72,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2527	G	A	N	18	ambiguous base in consensus	Check	False	False	False	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:100:T:0:N:0:O:2	.	2,24,1,81	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	2627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:73:G:0:T:2:N:0:O:1	.	0,50,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:86:T:0:N:0:O:2	.	3,29,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:99:C:0:G:3:T:0:N:0:O:2	.	3,50,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2822	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	1,54,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:71:G:0:T:2:N:0:O:2	.	0,70,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	20	.	0.6065573770491803	.	A:0:C:0:G:0:T:74:N:0:O:48	.	36,84,38,38	321.174	1375.8	.	.	.	.	mixed position	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:86:T:2:N:0:O:1	.	0,36,2,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:3:G:0:T:106:N:0:O:0	.	0,67,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:89:G:0:T:2:N:0:O:3	.	0,55,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:76:G:0:T:2:N:0:O:3	.	0,46,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:128:C:0:G:3:T:0:N:0:O:2	.	3,47,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,59,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:79:T:2:N:0:O:11	.	2,57,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:83:T:0:N:0:O:2	.	0,53,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:0:T:117:N:0:O:6	.	3,66,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	4084	C	T	C	16	ignore low frequency variant	Pass	False	False	True	249	.	20	.	0.03614457831325301	.	A:0:C:240:G:0:T:9:N:0:O:0	.	1,128,8,121	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	4237	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:0:T:78:N:0:O:5	.	2,28,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.03608247422680412	.	A:0:C:0:G:176:T:7:N:0:O:11	.	0,150,7,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	162	.	20	.	0.018518518518518517	.	A:0:C:0:G:141:T:3:N:0:O:18	.	0,141,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:86:C:0:G:0:T:3:N:0:O:3	.	0,53,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	4930	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,68,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	5089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:112:C:3:G:0:T:0:N:0:O:5	.	0,61,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	5100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:74:G:0:T:0:N:0:O:13	.	0,78,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	5589	C	T	C	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.02304147465437788	.	A:0:C:207:G:0:T:5:N:0:O:5	.	0,134,5,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.17105263157894737	.	A:0:C:63:G:0:T:13:N:0:O:0	.	1,62,12,14	.	.	.	.	.	mismatch(s)	.	0.15<maf<0.25	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	5917	G	T	G	16	ignore low frequency variant	Pass	False	False	True	244	.	20	.	0.020491803278688523	.	A:0:C:0:G:239:T:5:N:0:O:0	.	0,146,5,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.09302325581395349	.	A:0:C:78:G:0:T:8:N:0:O:0	.	0,68,8,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6258	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:95:G:0:T:2:N:0:O:0	.	0,59,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6306	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:80:T:0:N:0:O:4	.	2,26,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6312	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:1:C:108:G:0:T:3:N:0:O:21	.	0,75,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,53,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:109:N:0:O:2	.	0,75,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:101:G:0:T:3:N:0:O:2	.	0,71,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6352	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,33,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6397	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:0:G:0:T:2:N:0:O:0	.	1,53,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6835	T	A	T	16	ignore low frequency variant	Pass	False	False	True	255	.	20	.	0.023529411764705882	.	A:6:C:0:G:0:T:222:N:0:O:27	.	6,110,0,145	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6894	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,24,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	6960	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:1:C:0:G:131:T:4:N:0:O:0	.	0,70,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.08433734939759036	.	A:74:C:0:G:0:T:7:N:0:O:2	.	0,62,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	7034	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,62,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:85:T:0:N:0:O:3	.	5,18,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	7674	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:88:G:0:T:2:N:0:O:7	.	0,68,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	7809	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:0:N:0:O:1	.	2,31,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	7815	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:86:G:0:T:2:N:0:O:0	.	2,61,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	7819	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:79:G:0:T:2:N:0:O:3	.	2,49,0,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:105:C:0:G:3:T:0:N:0:O:0	.	3,39,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:0:C:4:G:0:T:165:N:0:O:0	.	0,109,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	8607	T	C	T	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:0:C:1:G:0:T:31:N:0:O:0	.	0,29,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	8738	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:109:C:0:G:3:T:0:N:0:O:1	.	3,43,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.03592814371257485	.	A:6:C:0:G:0:T:147:N:0:O:14	.	6,68,0,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	169	.	20	.	0.023668639053254437	.	A:4:C:0:G:165:T:0:N:0:O:0	.	4,64,0,105	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9246	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:1:C:97:G:0:T:3:N:0:O:0	.	0,68,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	9313	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:96:C:0:G:2:T:0:N:0:O:6	.	2,41,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,54,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.018867924528301886	.	A:0:C:73:G:0:T:2:N:0:O:31	.	2,102,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:0:C:1:G:0:T:44:N:0:O:1	.	1,43,0,3	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9629	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:47:N:0:O:0	.	1,43,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9812	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:2:G:0:T:50:N:0:O:0	.	2,47,0,5	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,17,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:91:G:0:T:4:N:0:O:10	.	2,32,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	10090	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:91:C:0:G:3:T:0:N:0:O:0	.	3,40,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,25,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:97:C:0:G:3:T:0:N:0:O:1	.	3,38,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	10675	G	T	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:118:T:3:N:0:O:0	.	3,65,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.05511811023622047	.	A:0:C:0:G:7:T:110:N:0:O:10	.	0,64,7,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	10995	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:79:C:0:G:2:T:1:N:0:O:2	.	1,25,1,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	11081	T	G	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:0:G:1:T:37:N:0:O:1	.	1,11,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	11743	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:4:C:0:G:91:T:0:N:0:O:3	.	0,56,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:0:C:0:G:134:T:4:N:0:O:63	.	0,84,4,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:64:C:0:G:4:T:0:N:0:O:0	.	1,49,3,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	12086	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:77:N:0:O:0	.	0,47,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:82:G:0:T:3:N:0:O:24	.	0,83,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.01694915254237288	.	A:2:C:0:G:94:T:0:N:0:O:22	.	1,84,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:125:C:0:G:4:T:0:N:0:O:5	.	4,53,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	13018	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:114:N:0:O:0	.	0,61,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	13124	G	T	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:0:G:74:T:2:N:0:O:0	.	1,42,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.06666666666666667	.	A:0:C:70:G:0:T:5:N:0:O:0	.	0,67,5,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:5:C:0:G:84:T:0:N:0:O:11	.	5,42,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:2:T:0:N:0:O:0	.	0,1,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:89:T:0:N:0:O:0	.	4,30,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	14128	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.05714285714285714	.	A:0:C:0:G:99:T:6:N:0:O:0	.	6,43,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:97:C:0:G:3:T:0:N:0:O:5	.	3,38,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	14391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:84:G:0:T:2:N:0:O:3	.	0,73,2,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	90	.	20	.	0.9888888888888889	.	A:0:C:1:G:0:T:89:N:0:O:0	.	47,48,42,42	539.443	1197.9	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:1:C:96:G:0:T:2:N:0:O:1	.	0,67,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:86:C:0:G:3:T:0:N:0:O:1	.	3,25,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:94:G:0:T:3:N:0:O:0	.	0,68,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	15071	T	A	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:0:T:98:N:0:O:1	.	2,43,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:96:T:0:N:0:O:4	.	3,30,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:0:C:3:G:0:T:66:N:0:O:0	.	0,63,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	15422	A	T	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:97:C:0:G:0:T:2:N:0:O:0	.	0,41,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	0,43,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:117:N:0:O:2	.	0,69,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:43:G:0:T:1:N:0:O:0	.	0,30,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	15988	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	2,51,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	16045	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:83:G:0:T:2:N:0:O:0	.	2,47,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:91:G:0:T:2:N:0:O:2	.	0,62,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:97:C:0:G:0:T:2:N:0:O:1	.	2,46,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	16328	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:98:C:0:G:0:T:2:N:0:O:2	.	2,46,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	16506	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:85:N:0:O:3	.	0,24,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0390625	.	A:0:C:0:G:119:T:5:N:0:O:4	.	4,62,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:4:C:0:G:94:T:0:N:0:O:3	.	4,23,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:0:G:3:T:96:N:0:O:1	.	0,70,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.04938271604938271	.	A:76:C:4:G:0:T:0:N:0:O:1	.	4,41,0,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	157	.	20	.	0.025477707006369428	.	A:4:C:0:G:151:T:0:N:0:O:2	.	4,20,0,137	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:0:T:70:N:0:O:3	.	2,15,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:0:G:3:T:0:N:0:O:0	.	3,39,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.046875	.	A:6:C:0:G:122:T:0:N:0:O:0	.	6,51,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:0:C:119:G:0:T:3:N:0:O:2	.	0,72,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17618	T	A	T	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:3:C:0:G:0:T:134:N:0:O:4	.	3,79,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17619	T	A	T	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:0:G:0:T:133:N:0:O:9	.	3,87,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,53,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.1	.	A:11:C:0:G:99:T:0:N:0:O:0	.	0,68,11,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:89:C:0:G:3:T:0:N:0:O:6	.	3,30,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:5:C:0:G:69:T:0:N:0:O:0	.	5,20,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	18060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:114:G:0:T:3:N:0:O:5	.	1,91,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	18365	T	C	T	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.0196078431372549	.	A:0:C:3:G:0:T:146:N:0:O:4	.	0,104,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:72:T:0:N:0:O:7	.	3,29,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:36:C:0:G:0:T:1:N:0:O:5	.	0,26,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.06363636363636363	.	A:7:C:0:G:101:T:0:N:0:O:2	.	7,24,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:73:G:0:T:3:N:0:O:2	.	0,61,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	20029	G	A	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.03937007874015748	.	A:5:C:0:G:121:T:0:N:0:O:1	.	5,57,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	20661	T	A	T	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:3:C:0:G:0:T:143:N:0:O:3	.	0,56,3,93	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	20662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:137:C:0:G:3:T:0:N:0:O:7	.	0,74,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	20686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:0:G:132:T:3:N:0:O:2	.	3,56,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	20691	G	A	G	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.022857142857142857	.	A:4:C:0:G:164:T:0:N:0:O:7	.	4,68,0,107	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	20886	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:91:C:0:G:2:T:0:N:0:O:6	.	2,35,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,52,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:4:C:0:G:104:T:0:N:0:O:0	.	4,44,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.10909090909090909	.	A:0:C:1:G:6:T:48:N:0:O:0	.	5,15,1,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.12941176470588237	.	A:0:C:0:G:72:T:11:N:0:O:2	.	0,54,11,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:73:T:1:N:0:O:2	.	0,60,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21281	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,62,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:0:T:2:N:0:O:0	.	2,34,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21504	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:2:G:0:T:83:N:0:O:18	.	0,84,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:125:T:0:N:0:O:10	.	3,65,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:126:G:0:T:3:N:0:O:15	.	0,80,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	21900	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,25,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	22165	T	A	T	16	ignore low frequency variant	Pass	False	False	True	199	.	20	.	0.020100502512562814	.	A:4:C:0:G:0:T:172:N:0:O:23	.	1,103,3,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:0:C:0:G:4:T:118:N:0:O:1	.	4,52,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.028985507246376812	.	A:0:C:133:G:0:T:4:N:0:O:1	.	0,97,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	22453	A	C	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:87:C:2:G:0:T:0:N:0:O:2	.	2,42,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.06896551724137931	.	A:26:C:0:G:2:T:0:N:0:O:1	.	0,5,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:0:G:2:T:67:N:0:O:1	.	2,21,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	252	.	20	.	0.023809523809523808	.	A:0:C:0:G:6:T:209:N:0:O:37	.	0,140,6,112	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	179	.	20	.	0.0223463687150838	.	A:0:C:150:G:0:T:4:N:0:O:25	.	0,148,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	126	.	20	.	0.9285714285714286	.	A:0:C:0:G:117:T:0:N:0:O:9	.	58,67,59,59	280.0	1684.0	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:78:T:0:N:0:O:8	.	3,18,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:91:G:0:T:3:N:0:O:1	.	0,71,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23603	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,63,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23712	A	T	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:124:C:0:G:0:T:3:N:0:O:7	.	0,70,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:79:C:0:G:2:T:0:N:0:O:1	.	2,16,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.1188118811881188	.	A:0:C:89:G:0:T:12:N:0:O:0	.	0,82,12,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23901	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	0,28,2,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23902	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:73:C:0:G:0:T:2:N:0:O:0	.	0,26,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.059602649006622516	.	A:142:C:0:G:0:T:9:N:0:O:0	.	9,80,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.11842105263157894	.	A:9:C:0:G:0:T:66:N:0:O:1	.	9,24,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:76:G:0:T:4:N:0:O:0	.	0,68,4,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24239	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:93:T:0:N:0:O:6	.	0,61,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24244	A	C	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:36:C:1:G:0:T:0:N:0:O:6	.	1,32,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.0847457627118644	.	A:0:C:45:G:1:T:5:N:0:O:8	.	1,51,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:74:T:0:N:0:O:3	.	2,12,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24297	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,42,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.04854368932038835	.	A:0:C:0:G:95:T:5:N:0:O:3	.	0,53,5,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:4:C:124:G:0:T:3:N:0:O:1	.	4,66,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.01935483870967742	.	A:144:C:0:G:0:T:3:N:0:O:8	.	3,103,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24718	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:79:G:0:T:2:N:0:O:6	.	0,82,2,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24776	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.01652892561983471	.	A:2:C:0:G:96:T:0:N:0:O:23	.	2,39,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:89:C:0:G:3:T:0:N:0:O:0	.	3,35,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24794	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:0:G:122:T:3:N:0:O:2	.	3,61,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:88:T:0:N:0:O:0	.	0,54,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:3:T:95:N:0:O:0	.	0,65,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24928	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,67,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	24930	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,71,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25105	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:42:C:0:G:2:T:0:N:0:O:1	.	0,4,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:85:T:0:N:0:O:2	.	0,18,2,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25159	T	C	T	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:3:G:0:T:123:N:0:O:0	.	0,62,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25160	C	T	C	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:0:C:117:G:0:T:4:N:0:O:0	.	0,62,4,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:0:G:5:T:95:N:0:O:1	.	5,32,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25465	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	0,57,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:0:T:3:N:0:O:0	.	3,50,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	115	.	20	.	1.0	.	A:0:C:0:G:0:T:115:N:0:O:0	.	52,52,63,63	419.237	1993.9	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:99:G:0:T:0:N:0:O:11	.	3,56,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,55,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25770	G	C	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:1:C:2:G:66:T:0:N:0:O:4	.	2,9,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25771	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:80:G:0:T:2:N:0:O:5	.	2,46,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.07272727272727272	.	A:51:C:4:G:0:T:0:N:0:O:0	.	1,37,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,54,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:84:G:0:T:4:N:0:O:1	.	0,56,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25840	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:107:G:1:T:3:N:0:O:0	.	0,66,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:66:C:1:G:1:T:2:N:0:O:2	.	0,53,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25848	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:2:G:0:T:61:N:0:O:0	.	0,41,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:100:C:0:G:3:T:0:N:0:O:0	.	3,45,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:86:C:0:G:3:T:0:N:0:O:2	.	3,27,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:92:G:0:T:2:N:0:O:5	.	0,51,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:0:N:0:O:2	.	2,30,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	25970	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,44,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26206	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:123:C:0:G:3:T:0:N:0:O:1	.	3,61,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26300	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,44,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26336	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:112:N:0:O:0	.	0,59,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26350	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:99:T:0:N:0:O:2	.	3,44,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.015625	.	A:0:C:81:G:0:T:2:N:0:O:45	.	0,104,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	26533	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:87:G:0:T:2:N:0:O:3	.	2,28,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	286	.	20	.	0.04195804195804196	.	A:12:C:0:G:1:T:272:N:0:O:1	.	12,147,0,139	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.06382978723404255	.	A:124:C:0:G:0:T:9:N:0:O:8	.	9,47,0,94	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.09016393442622951	.	A:11:C:0:G:110:T:0:N:0:O:1	.	11,24,0,98	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.03825136612021858	.	A:0:C:175:G:0:T:7:N:0:O:1	.	0,141,7,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26806	A	G	A	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.0273224043715847	.	A:176:C:0:G:5:T:1:N:0:O:1	.	5,95,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:84:N:0:O:11	.	1,78,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	26922	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:96:G:1:T:3:N:0:O:2	.	0,60,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:92:C:0:G:4:T:0:N:0:O:1	.	4,24,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:0:C:71:G:0:T:4:N:0:O:0	.	0,55,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	27418	C	T	C	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:0:C:139:G:0:T:3:N:0:O:0	.	3,71,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:88:G:0:T:0:N:0:O:3	.	4,48,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:105:C:0:G:0:T:4:N:0:O:27	.	4,86,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:72:T:0:N:0:O:3	.	2,6,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	27914	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:101:C:0:G:3:T:1:N:0:O:5	.	2,44,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	28087	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:98:G:0:T:3:N:0:O:1	.	1,46,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	28408	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:81:C:0:G:2:T:1:N:0:O:2	.	1,14,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	28681	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:2:C:0:G:78:T:0:N:0:O:1	.	2,30,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:93:C:0:G:2:T:0:N:0:O:2	.	2,25,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:64:C:0:G:2:T:0:N:0:O:1	.	2,3,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	28783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	1,50,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,65,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.10465116279069768	.	A:9:C:0:G:76:T:0:N:0:O:1	.	9,18,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:0:C:153:G:0:T:4:N:0:O:1	.	0,139,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29178	C	G	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:2:T:0:N:0:O:2	.	2,42,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,41,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29270	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:95:N:0:O:4	.	0,71,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:105:T:0:N:0:O:4	.	3,21,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:1:G:115:T:0:N:0:O:15	.	3,43,0,91	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29652	T	A	T	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.022598870056497175	.	A:4:C:0:G:0:T:170:N:0:O:3	.	0,101,4,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29685	T	G	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:0:G:1:T:26:N:0:O:0	.	1,17,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29686	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:30:G:0:T:1:N:0:O:2	.	1,22,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	29720	A	T	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:0:T:1:N:0:O:0	.	1,13,0,10	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29721	C	A	C	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:21:G:0:T:0:N:0:O:2	.	1,17,0,7	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	29787	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:0:T:1:N:0:O:0	.	0,18,1,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00128	artic-pipeline	NB02	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	303	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	2526	A	N	N	20	ambiguous base due to indel	Pass	.	False	False	189	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	152	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00128	artic-pipeline	NB02	MN908947.3	24982	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	152	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	85	T	C	T	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:1:G:0:T:26:N:0:O:0	.	1,9,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	153	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:27:N:0:O:0	.	0,9,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	238	T	G	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:0:G:1:T:20:N:0:O:0	.	0,7,1,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	23	.	20	.	1.0	.	A:0:C:0:G:0:T:23:N:0:O:0	.	7,7,16,16	70.0	1373.4	.	depth near threshold	.	.	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	282	C	T	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:0:T:1:N:0:O:0	.	0,7,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:3:G:0:T:91:N:0:O:5	.	3,25,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:3:C:0:G:135:T:0:N:0:O:0	.	3,56,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:132:C:0:G:3:T:0:N:0:O:2	.	3,36,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	135	.	20	.	0.9925925925925926	.	A:0:C:0:G:0:T:134:N:0:O:1	.	67,68,67,67	199.694	1483.9	.	.	.	.	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	1214	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:74:G:0:T:2:N:0:O:10	.	0,54,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.03389830508474576	.	A:0:C:2:G:0:T:56:N:0:O:1	.	0,52,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	1,17,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:133:C:0:G:0:T:4:N:0:O:2	.	4,56,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.03496503496503497	.	A:0:C:137:G:5:T:0:N:0:O:1	.	5,64,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.03418803418803419	.	A:0:C:112:G:0:T:4:N:0:O:1	.	0,71,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:5:G:0:T:100:N:0:O:5	.	0,53,5,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:62:C:0:G:2:T:0:N:0:O:0	.	1,8,1,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:3:C:1:G:128:T:0:N:0:O:13	.	1,68,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:6:C:0:G:92:T:0:N:0:O:0	.	6,32,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	2292	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:109:C:0:G:3:T:0:N:0:O:1	.	3,52,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:83:T:0:N:0:O:2	.	2,25,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:119:C:4:G:0:T:1:N:0:O:0	.	4,66,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:84:G:0:T:3:N:0:O:1	.	0,77,3,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.746031746031746	.	A:0:C:0:G:0:T:94:N:0:O:32	.	49,81,45,45	57.196	1499.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:0:G:79:T:2:N:0:O:8	.	0,59,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:1:C:92:G:0:T:4:N:0:O:3	.	0,56,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0375	.	A:0:C:77:G:0:T:3:N:0:O:0	.	0,46,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:44:C:0:G:0:T:1:N:0:O:2	.	0,23,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.09210526315789473	.	A:0:C:69:G:0:T:7:N:0:O:0	.	0,58,7,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:82:N:0:O:15	.	0,48,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:93:T:3:N:0:O:2	.	1,55,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	3886	T	A	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:1:G:0:T:110:N:0:O:3	.	3,58,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	3890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:84:T:0:N:0:O:0	.	2,16,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:74:G:0:T:2:N:0:O:0	.	0,68,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.024271844660194174	.	A:5:C:0:G:194:T:0:N:0:O:7	.	5,62,0,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4285	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	1,33,1,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:59:G:0:T:2:N:0:O:2	.	0,52,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.016666666666666666	.	A:2:C:0:G:0:T:96:N:0:O:22	.	0,70,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.028735632183908046	.	A:0:C:0:G:152:T:5:N:0:O:17	.	0,148,5,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4390	G	A	G	16	ignore low frequency variant	Pass	False	False	True	220	.	20	.	0.022727272727272728	.	A:5:C:0:G:214:T:0:N:0:O:1	.	0,119,5,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.02304147465437788	.	A:1:C:192:G:0:T:5:N:0:O:19	.	0,130,5,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:97:C:0:G:0:T:2:N:0:O:5	.	0,60,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:90:G:0:T:2:N:0:O:0	.	0,64,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:90:G:0:T:2:N:0:O:3	.	0,73,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5100	C	A	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:71:G:0:T:0:N:0:O:16	.	0,78,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5138	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,26,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	1,27,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:99:C:0:G:4:T:0:N:0:O:2	.	4,38,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5553	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:92:C:0:G:2:T:0:N:0:O:4	.	2,47,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5674	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	1,48,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5677	T	G	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:0:G:2:T:77:N:0:O:0	.	2,55,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.11290322580645161	.	A:0:C:54:G:0:T:7:N:0:O:1	.	1,54,6,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:2:G:0:T:74:N:0:O:0	.	0,54,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:86:T:0:N:0:O:6	.	2,20,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	5873	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:89:T:0:N:0:O:16	.	1,32,3,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.07692307692307693	.	A:0:C:83:G:0:T:7:N:0:O:1	.	0,66,7,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6125	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,30,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6203	A	T	A	16	ignore low frequency variant	Pass	False	False	True	215	.	20	.	0.023255813953488372	.	A:207:C:0:G:0:T:5:N:0:O:3	.	5,79,0,136	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:85:G:0:T:2:N:0:O:2	.	0,63,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6321	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	0,63,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:0:G:2:T:98:N:0:O:4	.	0,70,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6531	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:92:C:0:G:3:T:0:N:0:O:1	.	3,23,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6648	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:1:C:101:G:0:T:3:N:0:O:0	.	0,69,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:0:G:5:T:100:N:0:O:3	.	0,61,5,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.024752475247524754	.	A:189:C:0:G:5:T:3:N:0:O:5	.	5,84,0,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	200	.	20	.	0.04	.	A:0:C:185:G:0:T:8:N:0:O:7	.	0,128,8,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:4:C:0:G:86:T:0:N:0:O:0	.	4,33,0,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.07894736842105263	.	A:70:C:0:G:0:T:6:N:0:O:0	.	0,59,6,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7229	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:89:T:2:N:0:O:1	.	0,29,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:90:G:0:T:2:N:0:O:2	.	0,62,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:4:C:0:G:105:T:0:N:0:O:0	.	4,38,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:95:T:0:N:0:O:2	.	3,37,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:71:G:0:T:3:N:0:O:22	.	1,81,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7697	A	T	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:85:C:0:G:0:T:3:N:0:O:1	.	2,34,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	7852	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:4:G:0:T:100:N:0:O:0	.	0,64,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	147	.	20	.	0.02040816326530612	.	A:142:C:3:G:1:T:0:N:0:O:1	.	0,99,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,31,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:0:G:0:T:2:N:0:O:1	.	2,31,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8489	T	C	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:0:C:2:G:0:T:61:N:0:O:0	.	0,42,2,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8565	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:0:T:2:N:0:O:0	.	0,45,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8566	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:1:C:2:G:0:T:80:N:0:O:2	.	0,45,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8612	G	T	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:0:G:79:T:2:N:0:O:0	.	1,38,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:5:C:0:G:67:T:0:N:0:O:1	.	5,6,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.05263157894736842	.	A:6:C:0:G:0:T:103:N:0:O:5	.	6,48,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:4:C:0:G:116:T:0:N:0:O:0	.	4,44,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	9158	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	2,33,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	9752	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:2:T:0:N:0:O:1	.	2,35,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,24,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:0:C:96:G:0:T:2:N:0:O:12	.	2,44,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	10010	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	0,71,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:81:T:0:N:0:O:0	.	3,16,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:0:G:3:T:0:N:0:O:1	.	3,34,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,70,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:92:G:1:T:0:N:0:O:4	.	3,49,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	11138	G	T	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:1:C:0:G:97:T:2:N:0:O:5	.	0,68,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	11513	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:0:G:3:T:0:N:0:O:0	.	3,49,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.07142857142857142	.	A:0:C:90:G:0:T:7:N:0:O:1	.	0,61,7,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	11758	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:95:G:0:T:2:N:0:O:5	.	0,62,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.015384615384615385	.	A:0:C:0:G:131:T:3:N:0:O:61	.	0,82,3,113	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:65:C:0:G:3:T:0:N:0:O:0	.	0,50,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	12333	C	G	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:0:C:123:G:4:T:0:N:0:O:31	.	2,72,2,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:3:G:0:T:0:N:0:O:0	.	2,56,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:90:T:0:N:0:O:5	.	3,30,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:0:C:69:G:1:T:4:N:0:O:0	.	0,57,4,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	13014	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:119:N:0:O:0	.	0,54,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	13281	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:0:T:2:N:0:O:0	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:4:C:0:G:0:T:115:N:0:O:13	.	4,78,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.07407407407407407	.	A:0:C:75:G:0:T:6:N:0:O:0	.	0,71,6,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:98:T:0:N:0:O:7	.	3,46,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:96:G:0:T:0:N:0:O:6	.	2,43,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	2,38,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:88:T:0:N:0:O:0	.	3,29,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	14130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:99:C:0:G:3:T:0:N:0:O:2	.	3,35,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	98	.	20	.	0.9795918367346939	.	A:0:C:1:G:0:T:96:N:0:O:1	.	57,58,39,40	456.801	1350.7	.	.	.	.	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,69,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	14488	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,23,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	14545	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:94:C:0:G:0:T:3:N:0:O:0	.	3,28,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,27,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:2:G:0:T:71:N:0:O:2	.	0,69,2,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	15146	G	A	G	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:0:G:109:T:0:N:0:O:1	.	3,43,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:84:G:0:T:3:N:0:O:0	.	0,54,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	15768	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,55,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.015625	.	A:0:C:1:G:0:T:48:N:0:O:15	.	0,39,1,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.0625	.	A:0:C:45:G:0:T:3:N:0:O:0	.	0,28,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	16106	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:79:T:0:N:0:O:6	.	2,12,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:0:C:103:G:0:T:5:N:0:O:2	.	0,69,5,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	16264	T	A	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:0:T:97:N:0:O:3	.	0,62,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:89:C:0:G:0:T:2:N:0:O:0	.	2,38,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:0:G:118:T:3:N:0:O:2	.	2,53,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:0:G:3:T:101:N:0:O:3	.	0,71,3,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:3:C:0:G:117:T:0:N:0:O:32	.	0,91,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.03333333333333333	.	A:6:C:0:G:170:T:0:N:0:O:4	.	6,45,0,135	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:75:G:0:T:2:N:0:O:2	.	0,61,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:72:C:0:G:2:T:0:N:0:O:1	.	2,7,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.06666666666666667	.	A:5:C:0:G:0:T:69:N:0:O:1	.	5,9,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17502	C	T	T	17	accept high frequency variant	Pass	False	True	True	125	.	20	.	0.952	.	A:0:C:0:G:0:T:119:N:0:O:6	.	57,63,62,62	209.237	1063.1	.	.	.	.	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	17571	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,68,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:82:G:0:T:3:N:0:O:4	.	0,43,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:67:G:0:T:3:N:0:O:1	.	0,41,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:88:C:0:G:0:T:2:N:0:O:10	.	0,42,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.05555555555555555	.	A:6:C:0:G:101:T:0:N:0:O:1	.	0,62,6,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	18060	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:93:G:0:T:2:N:0:O:3	.	0,75,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	18439	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:92:N:0:O:8	.	1,39,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	18440	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:93:G:0:T:2:N:0:O:9	.	2,24,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:82:C:0:G:3:T:1:N:0:O:1	.	3,38,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:69:T:0:N:0:O:0	.	2,16,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.075	.	A:32:C:0:G:0:T:3:N:0:O:5	.	1,18,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.034482758620689655	.	A:0:C:0:G:4:T:112:N:0:O:0	.	4,49,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	18989	T	A	T	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:3:C:0:G:0:T:131:N:0:O:0	.	3,55,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:0:C:60:G:0:T:3:N:0:O:1	.	1,50,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	19656	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,46,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:0:C:3:G:0:T:87:N:0:O:2	.	0,54,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:48:N:0:O:0	.	1,36,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:84:C:0:G:3:T:0:N:0:O:0	.	3,25,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	20678	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:123:G:0:T:3:N:0:O:8	.	0,84,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	20856	A	G	A	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:185:C:0:G:4:T:1:N:0:O:4	.	4,63,0,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:0:C:104:G:0:T:3:N:0:O:2	.	0,61,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:2:C:0:G:92:T:0:N:0:O:11	.	2,22,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.06557377049180328	.	A:0:C:0:G:4:T:57:N:0:O:0	.	2,12,2,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.1276595744680851	.	A:0:C:0:G:75:T:12:N:0:O:7	.	0,64,12,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21150	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:85:C:0:G:2:T:0:N:0:O:2	.	1,49,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21250	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:120:C:0:G:3:T:0:N:0:O:1	.	3,53,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21269	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:107:G:0:T:4:N:0:O:0	.	0,69,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21434	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:0:T:115:N:0:O:0	.	3,55,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:103:C:0:G:0:T:4:N:0:O:0	.	4,40,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:76:C:0:G:2:T:0:N:0:O:4	.	2,14,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.08333333333333333	.	A:7:C:0:G:74:T:0:N:0:O:3	.	7,15,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21630	A	C	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:2:G:0:T:0:N:0:O:1	.	1,47,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:0:G:111:T:0:N:0:O:12	.	3,55,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:94:N:0:O:1	.	1,37,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22435	T	A	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:1:C:0:G:0:T:23:N:0:O:0	.	0,13,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22474	A	T	A	16	ignore low frequency variant	Pass	False	False	True	32	.	20	.	0.03125	.	A:31:C:0:G:0:T:1:N:0:O:0	.	1,17,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22475	T	C	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:0:C:1:G:0:T:29:N:0:O:1	.	1,16,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22502	C	A	C	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:29:G:0:T:0:N:0:O:1	.	1,15,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22516	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:24:N:0:O:1	.	0,13,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22527	C	A	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:27:G:0:T:0:N:0:O:0	.	1,16,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22551	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:1:C:109:G:0:T:3:N:0:O:2	.	0,54,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22663	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	2,16,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	168	.	20	.	0.023809523809523808	.	A:1:C:0:G:4:T:135:N:0:O:28	.	0,95,4,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23035	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:86:N:0:O:1	.	0,79,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:101:G:0:T:3:N:0:O:10	.	2,97,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23133	T	C	T	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.025157232704402517	.	A:0:C:4:G:0:T:155:N:0:O:0	.	0,92,4,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	131	.	20	.	0.9618320610687023	.	A:0:C:0:G:126:T:0:N:0:O:5	.	62,67,64,64	274.466	1770.8	.	.	.	.	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	23601	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	0,72,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23627	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	2,48,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23752	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:119:N:0:O:0	.	0,58,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:84:G:0:T:4:N:0:O:0	.	0,72,4,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:3:G:0:T:107:N:0:O:0	.	0,76,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23912	C	A	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:100:G:0:T:0:N:0:O:2	.	3,52,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.0364963503649635	.	A:132:C:0:G:0:T:5:N:0:O:0	.	3,72,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.06557377049180328	.	A:4:C:0:G:0:T:57:N:0:O:0	.	3,14,1,47	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.04411764705882353	.	A:3:C:0:G:64:T:0:N:0:O:1	.	3,13,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:0:C:71:G:0:T:3:N:0:O:10	.	0,74,3,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:87:T:0:N:0:O:1	.	2,18,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:83:T:0:N:0:O:4	.	3,17,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:109:C:0:G:3:T:0:N:0:O:2	.	3,44,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:0:G:91:T:2:N:0:O:3	.	0,53,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24677	A	G	A	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:47:C:0:G:1:T:0:N:0:O:0	.	1,3,0,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24700	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.05217391304347826	.	A:0:C:107:G:0:T:6:N:0:O:2	.	0,73,6,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24981	C	G	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:0:C:81:G:2:T:0:N:0:O:31	.	2,80,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	24982	T	C	T	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.05714285714285714	.	A:0:C:2:G:0:T:31:N:0:O:2	.	2,23,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.03260869565217391	.	A:86:C:0:G:3:T:0:N:0:O:3	.	3,23,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:85:G:0:T:3:N:0:O:3	.	3,62,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:0:G:4:T:93:N:0:O:1	.	4,44,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	0.9914529914529915	.	A:0:C:0:G:1:T:116:N:0:O:0	.	54,54,62,63	350.0	1997.4	.	.	.	.	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	25704	T	C	T	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:2:G:0:T:68:N:0:O:0	.	2,45,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.047619047619047616	.	A:6:C:81:G:0:T:0:N:0:O:39	.	4,37,2,89	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:67:C:3:G:0:T:0:N:0:O:5	.	0,40,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25872	C	T	C	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:0:C:116:G:0:T:4:N:0:O:0	.	0,69,4,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:77:C:0:G:3:T:0:N:0:O:3	.	3,18,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:87:T:0:N:0:O:1	.	3,27,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:83:G:0:T:3:N:0:O:39	.	1,107,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:0:C:2:G:0:T:45:N:0:O:0	.	1,44,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26423	C	A	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:2:C:70:G:0:T:1:N:0:O:1	.	2,68,0,6	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,59,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26531	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	1,65,2,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:4:C:0:G:88:T:0:N:0:O:0	.	4,24,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26545	T	A	T	16	ignore low frequency variant	Pass	False	False	True	252	.	20	.	0.023809523809523808	.	A:6:C:0:G:0:T:245:N:0:O:1	.	6,127,0,125	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	189	.	20	.	0.047619047619047616	.	A:0:C:180:G:0:T:9:N:0:O:0	.	0,156,9,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	233	.	20	.	0.02575107296137339	.	A:0:C:6:G:0:T:227:N:0:O:0	.	0,162,6,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26608	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:77:N:0:O:2	.	0,35,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.07692307692307693	.	A:91:C:0:G:0:T:8:N:0:O:5	.	7,28,1,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:83:T:0:N:0:O:0	.	3,12,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:103:G:0:T:3:N:0:O:1	.	0,81,3,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:0:C:176:G:0:T:4:N:0:O:4	.	0,164,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.08823529411764706	.	A:0:C:62:G:0:T:6:N:0:O:0	.	0,49,6,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:0:C:83:G:0:T:4:N:0:O:0	.	0,62,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:3:G:0:T:93:N:0:O:0	.	0,53,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	27742	A	C	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:94:C:2:G:0:T:0:N:0:O:3	.	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	28016	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:101:G:0:T:3:N:0:O:1	.	0,67,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	28151	T	A	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:0:T:90:N:0:O:0	.	0,57,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.05128205128205128	.	A:4:C:0:G:0:T:73:N:0:O:1	.	0,37,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:90:C:0:G:2:T:2:N:0:O:0	.	2,41,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:78:G:0:T:2:N:0:O:8	.	1,34,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,64,3,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,27,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	29062	T	C	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:2:G:0:T:89:N:0:O:0	.	0,59,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:97:T:0:N:0:O:0	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:4:C:91:G:0:T:0:N:0:O:5	.	4,57,0,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	29218	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:0:C:117:G:0:T:4:N:0:O:23	.	0,59,4,85	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00129	artic-pipeline	NB03	MN908947.3	29219	G	C	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:1:C:4:G:74:T:0:N:0:O:0	.	0,34,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	29378	A	C	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:74:C:2:G:0:T:0:N:0:O:3	.	0,41,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.045454545454545456	.	A:40:C:0:G:2:T:0:N:0:O:2	.	0,2,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	29704	A	G	A	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:20:C:0:G:1:T:0:N:0:O:1	.	1,18,0,4	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00129	artic-pipeline	NB03	MN908947.3	8606	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	108	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	11	.	20	.	1.0	.	A:0:C:0:G:0:T:11:N:0:O:0	.	1,1,10,10	140.0	1230.2	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:76:N:0:O:6	.	2,21,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:144:C:0:G:3:T:0:N:0:O:1	.	3,46,0,102	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:0:T:2:N:0:O:2	.	2,14,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	835	C	G	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:90:G:3:T:0:N:0:O:2	.	0,60,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	841	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:94:G:0:T:3:N:0:O:2	.	0,60,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:92:G:0:T:3:N:0:O:2	.	0,58,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	1030	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:1:C:0:G:2:T:94:N:0:O:5	.	0,58,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:75:T:0:N:0:O:24	.	1,11,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:2:T:0:N:0:O:0	.	0,46,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	1412	A	G	A	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:133:C:0:G:3:T:0:N:0:O:0	.	3,65,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.042735042735042736	.	A:0:C:110:G:0:T:5:N:0:O:2	.	1,75,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	1594	C	G	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:0:C:83:G:3:T:0:N:0:O:3	.	2,34,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.07462686567164178	.	A:61:C:0:G:5:T:0:N:0:O:1	.	3,10,2,57	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.043795620437956206	.	A:6:C:0:G:119:T:0:N:0:O:12	.	3,64,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.0625	.	A:7:C:0:G:105:T:0:N:0:O:0	.	7,41,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	2299	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:99:G:0:T:3:N:0:O:5	.	0,75,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	2303	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:88:C:0:G:0:T:2:N:0:O:8	.	0,67,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	2304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:88:C:0:G:0:T:2:N:0:O:8	.	0,70,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:0:G:0:T:114:N:0:O:0	.	58,58,56,56	201.455	1353.6	.	.	.	.	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:78:T:0:N:0:O:2	.	0,36,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	2,26,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	2,29,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	120	.	20	.	0.7166666666666667	.	A:0:C:0:G:0:T:86:N:0:O:34	.	44,78,42,42	58.445	1386.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	3134	G	T	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:0:G:95:T:2:N:0:O:1	.	0,39,2,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3136	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:112:N:0:O:3	.	0,69,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:79:C:0:G:2:T:0:N:0:O:4	.	2,13,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:87:N:0:O:2	.	2,14,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3205	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:93:C:0:G:2:T:0:N:0:O:3	.	1,38,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:0:C:76:G:0:T:5:N:0:O:1	.	0,48,5,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:73:G:0:T:2:N:0:O:3	.	0,44,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	3413	A	T	A	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0392156862745098	.	A:45:C:0:G:0:T:2:N:0:O:4	.	2,27,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3519	T	C	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:0:C:3:G:0:T:126:N:0:O:0	.	0,68,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:82:G:0:T:2:N:0:O:0	.	0,64,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3637	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,23,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3661	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,28,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:72:T:0:N:0:O:0	.	0,44,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3902	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,68,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	3903	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:75:G:0:T:2:N:0:O:0	.	0,66,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	3991	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:3:G:0:T:108:N:0:O:0	.	0,70,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4222	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:92:C:0:G:2:T:0:N:0:O:0	.	1,37,1,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4254	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,45,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4284	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:95:C:0:G:2:T:0:N:0:O:5	.	2,35,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4300	G	T	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:92:T:2:N:0:O:6	.	1,51,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:0:T:85:N:0:O:20	.	0,64,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	193	.	20	.	0.046632124352331605	.	A:0:C:0:G:172:T:9:N:0:O:12	.	0,151,9,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4383	G	T	G	16	ignore low frequency variant	Pass	False	False	True	188	.	20	.	0.02127659574468085	.	A:0:C:0:G:159:T:4:N:0:O:25	.	0,170,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:109:C:0:G:0:T:3:N:0:O:9	.	0,66,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4788	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:92:G:0:T:3:N:0:O:1	.	0,65,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:0:C:0:G:4:T:110:N:0:O:4	.	0,65,4,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	4965	C	T	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:122:G:0:T:3:N:0:O:0	.	1,64,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	5085	T	A	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.0273972602739726	.	A:4:C:0:G:0:T:133:N:0:O:9	.	2,70,2,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	5086	A	T	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:127:C:0:G:0:T:3:N:0:O:0	.	1,62,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,21,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	5306	T	A	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:0:T:86:N:0:O:0	.	2,33,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	5561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:97:T:0:N:0:O:2	.	2,44,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.11538461538461539	.	A:0:C:68:G:0:T:9:N:0:O:1	.	0,62,9,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:88:G:0:T:3:N:0:O:5	.	0,78,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.09090909090909091	.	A:0:C:80:G:0:T:8:N:0:O:0	.	0,64,8,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6117	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:93:G:0:T:2:N:0:O:1	.	0,55,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:87:N:0:O:14	.	2,45,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6145	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	3,61,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:1:C:100:G:0:T:4:N:0:O:2	.	0,64,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6335	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:99:N:0:O:1	.	0,73,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6336	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:99:G:0:T:3:N:0:O:3	.	0,74,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6357	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:97:C:0:G:2:T:0:N:0:O:2	.	2,31,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:97:N:0:O:1	.	0,67,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:0:C:1:G:5:T:98:N:0:O:2	.	0,64,5,42	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.06976744186046512	.	A:80:C:0:G:0:T:6:N:0:O:0	.	0,64,6,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	7207	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:3:C:0:G:0:T:111:N:0:O:4	.	0,60,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:93:N:0:O:0	.	2,33,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:101:C:3:G:0:T:0:N:0:O:0	.	3,39,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:91:C:0:G:3:T:0:N:0:O:0	.	3,27,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	7861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:2:G:0:T:95:N:0:O:10	.	0,57,2,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:3:G:0:T:97:N:0:O:0	.	0,67,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	8628	A	G	A	16	ignore low frequency variant	Pass	False	False	True	210	.	20	.	0.023809523809523808	.	A:203:C:0:G:5:T:1:N:0:O:1	.	4,73,1,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	8697	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:91:G:0:T:2:N:0:O:0	.	0,62,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	8767	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:3:T:116:N:0:O:2	.	0,52,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:2:C:0:G:64:T:0:N:0:O:0	.	2,2,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:3:C:0:G:0:T:87:N:0:O:5	.	2,37,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:94:T:0:N:0:O:0	.	3,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	9313	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:110:C:0:G:4:T:0:N:0:O:4	.	4,47,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	9430	C	T	T	17	accept high frequency variant	Pass	False	True	True	110	.	20	.	0.9818181818181818	.	A:0:C:0:G:0:T:108:N:0:O:2	.	52,54,56,56	276.227	1472.0	.	.	.	.	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	9714	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:80:G:0:T:2:N:0:O:11	.	0,66,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:3:C:0:G:82:T:0:N:0:O:0	.	3,23,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	9969	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:90:G:0:T:3:N:0:O:8	.	3,30,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	10158	T	A	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:0:G:0:T:108:N:0:O:1	.	0,63,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	10283	G	T	G	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:0:G:116:T:3:N:0:O:0	.	0,65,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	10366	T	C	T	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:3:G:0:T:107:N:0:O:2	.	1,66,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:116:C:0:G:4:T:0:N:0:O:1	.	4,44,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:0:G:3:T:94:N:0:O:4	.	0,51,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.017241379310344827	.	A:2:C:97:G:0:T:0:N:0:O:17	.	2,64,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	2,42,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:2:T:90:N:0:O:0	.	0,41,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	11495	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:119:N:0:O:0	.	0,70,3,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	11657	T	G	T	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02358490566037736	.	A:0:C:0:G:5:T:206:N:0:O:1	.	4,115,1,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:0:C:93:G:0:T:5:N:0:O:4	.	0,67,5,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:0:C:0:G:133:T:4:N:0:O:61	.	1,75,3,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.05405405405405406	.	A:70:C:0:G:4:T:0:N:0:O:0	.	1,57,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:3:C:0:G:77:T:0:N:0:O:22	.	0,72,3,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:0:C:125:G:0:T:3:N:0:O:0	.	3,59,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:118:G:1:T:3:N:0:O:5	.	3,60,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:101:C:3:G:0:T:0:N:0:O:1	.	2,57,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:4:G:0:T:104:N:0:O:1	.	0,63,4,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:91:T:0:N:0:O:10	.	3,38,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12658	A	T	A	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:78:C:0:G:0:T:2:N:0:O:0	.	2,32,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:121:C:0:G:3:T:0:N:0:O:0	.	3,62,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12957	T	A	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.02112676056338028	.	A:3:C:0:G:0:T:139:N:0:O:0	.	3,53,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:111:C:0:G:4:T:0:N:0:O:0	.	4,37,0,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12982	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:94:C:0:G:2:T:0:N:0:O:1	.	2,14,0,83	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:132:C:0:G:3:T:0:N:0:O:0	.	3,59,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:125:C:0:G:3:T:1:N:0:O:16	.	3,69,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:71:G:0:T:3:N:0:O:0	.	0,69,3,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:5:C:0:G:93:T:0:N:0:O:6	.	5,39,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	13492	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:1:C:75:G:1:T:2:N:0:O:0	.	0,56,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	13584	C	T	C	16	ignore low frequency variant	Pass	False	False	True	65	.	20	.	0.03076923076923077	.	A:0:C:63:G:0:T:2:N:0:O:0	.	1,32,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:92:G:0:T:0:N:0:O:8	.	3,40,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	13972	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:94:N:0:O:3	.	2,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	91	.	20	.	1.0	.	A:0:C:0:G:0:T:91:N:0:O:0	.	55,55,36,36	539.137	1207.2	.	.	.	.	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:96:G:0:T:3:N:0:O:0	.	0,65,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	14724	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:85:G:0:T:3:N:0:O:7	.	0,73,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:88:G:0:T:2:N:0:O:4	.	0,70,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:4:G:0:T:98:N:0:O:2	.	0,62,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:102:T:0:N:0:O:0	.	4,37,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	15093	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:3:C:0:G:96:T:0:N:0:O:1	.	3,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:0:C:5:G:0:T:71:N:0:O:0	.	0,66,5,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	15250	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:2:G:0:T:0:N:0:O:0	.	1,48,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.07547169811320754	.	A:0:C:49:G:0:T:4:N:0:O:0	.	0,31,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:94:G:0:T:2:N:0:O:1	.	0,57,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	16248	T	C	T	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:0:C:3:G:0:T:119:N:0:O:1	.	3,59,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:0:G:109:T:3:N:0:O:3	.	3,55,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	16662	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:118:T:1:N:0:O:1	.	0,51,3,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:84:T:0:N:0:O:1	.	2,15,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:3:C:0:G:65:T:0:N:0:O:5	.	3,18,0,55	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:0:G:4:T:100:N:0:O:2	.	0,69,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.022727272727272728	.	A:4:C:0:G:127:T:1:N:0:O:44	.	0,94,4,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	16987	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:0:T:77:N:0:O:1	.	4,15,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17432	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:95:N:0:O:2	.	2,31,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:2:G:1:T:0:N:0:O:0	.	2,32,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:5:C:0:G:97:T:0:N:0:O:0	.	5,37,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,48,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17734	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:0:C:123:G:0:T:4:N:0:O:0	.	0,93,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:0:C:66:G:0:T:3:N:0:O:0	.	0,41,3,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.08181818181818182	.	A:9:C:0:G:101:T:0:N:0:O:0	.	0,61,9,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,72,2,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:96:T:0:N:0:O:0	.	2,37,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:0:G:2:T:89:N:0:O:0	.	2,36,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	18461	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:127:G:0:T:3:N:0:O:1	.	0,81,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:0:G:125:T:4:N:0:O:0	.	0,79,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	18675	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:112:C:0:G:3:T:0:N:0:O:1	.	3,54,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	18881	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,52,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	19478	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,28,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.1111111111111111	.	A:0:C:56:G:0:T:7:N:0:O:0	.	0,49,7,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	19559	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:91:T:0:N:0:O:2	.	2,22,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	20181	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:0:G:3:T:0:N:0:O:0	.	3,38,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	20686	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:87:T:0:N:0:O:5	.	0,45,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	20941	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:95:G:0:T:2:N:0:O:1	.	0,55,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:4:C:0:G:99:T:0:N:0:O:0	.	4,39,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.10576923076923077	.	A:0:C:0:G:81:T:11:N:0:O:12	.	0,71,11,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.013333333333333334	.	A:0:C:1:G:0:T:48:N:0:O:26	.	0,61,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:69:C:0:G:3:T:0:N:0:O:0	.	3,5,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.06976744186046512	.	A:6:C:0:G:80:T:0:N:0:O:0	.	6,19,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	21583	A	T	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:121:C:0:G:0:T:3:N:0:O:1	.	3,59,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:0:C:85:G:0:T:3:N:0:O:5	.	0,70,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:1:C:5:G:0:T:80:N:0:O:0	.	0,66,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:37:C:0:G:1:T:0:N:0:O:2	.	0,7,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:95:T:0:N:0:O:5	.	2,34,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9558823529411765	.	A:0:C:0:G:130:T:0:N:0:O:6	.	65,71,65,65	70.0	1766.7	.	.	.	.	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:107:C:0:G:3:T:0:N:0:O:3	.	3,45,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23554	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:108:C:0:G:3:T:0:N:0:O:1	.	3,44,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:94:T:0:N:0:O:1	.	2,29,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23593	G	T	G	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0703125	.	A:0:C:0:G:119:T:9:N:0:O:0	.	3,59,6,69	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:86:C:0:G:2:T:0:N:0:O:0	.	2,23,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:0:C:85:G:0:T:5:N:0:O:1	.	0,72,5,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23877	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:0:T:98:N:0:O:1	.	0,72,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:86:G:0:T:2:N:0:O:11	.	1,63,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	2,10,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:80:T:0:N:0:O:1	.	2,19,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:77:T:0:N:0:O:3	.	4,19,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	24466	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:2:C:98:G:0:T:3:N:0:O:3	.	0,59,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:0:G:3:T:0:N:0:O:0	.	3,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	1,23,0,11	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:0:G:2:T:98:N:0:O:2	.	2,36,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:80:G:0:T:2:N:0:O:1	.	0,69,2,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:0:C:0:G:3:T:94:N:0:O:0	.	3,36,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	117	.	20	.	1.0	.	A:0:C:0:G:0:T:117:N:0:O:0	.	55,55,62,62	280.0	1968.6	.	.	.	.	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	25592	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:41:C:0:G:1:T:0:N:0:O:0	.	1,2,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:96:G:0:T:0:N:0:O:6	.	4,56,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25703	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:67:G:0:T:2:N:0:O:12	.	2,66,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25770	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:1:G:74:T:0:N:0:O:3	.	2,18,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.046511627906976744	.	A:6:C:79:G:0:T:0:N:0:O:44	.	5,39,1,90	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.044444444444444446	.	A:43:C:2:G:0:T:0:N:0:O:0	.	0,30,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25849	T	G	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:0:G:2:T:85:N:0:O:1	.	2,54,0,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:89:C:0:G:3:T:0:N:0:O:2	.	3,28,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:78:C:0:G:5:T:0:N:0:O:3	.	5,30,0,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:95:G:0:T:2:N:0:O:2	.	1,52,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	26233	G	T	T	14	new position at high frequency	Pass	False	True	True	264	.	20	.	0.9924242424242424	.	A:0:C:0:G:1:T:262:N:0:O:1	.	134,135,128,129	70.0	1782.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,62,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.017241379310344827	.	A:0:C:83:G:0:T:2:N:0:O:31	.	0,91,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00131	artic-pipeline	NB06	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.0449438202247191	.	A:0:C:84:G:0:T:4:N:0:O:1	.	0,53,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0273972602739726	.	A:0:C:6:G:0:T:212:N:0:O:1	.	0,141,6,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:83:C:0:G:0:T:4:N:0:O:3	.	4,20,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:76:T:0:N:0:O:1	.	2,7,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:0:C:81:G:0:T:4:N:0:O:1	.	0,66,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26764	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	0,56,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26910	A	T	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:71:C:0:G:0:T:2:N:0:O:5	.	2,25,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	26943	G	C	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:1:C:3:G:91:T:0:N:0:O:2	.	3,33,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:5:C:0:G:71:T:0:N:0:O:0	.	5,17,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0684931506849315	.	A:0:C:68:G:0:T:5:N:0:O:0	.	0,57,5,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.05319148936170213	.	A:5:C:86:G:0:T:0:N:0:O:3	.	4,47,1,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:116:C:0:G:0:T:4:N:0:O:35	.	4,89,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.03636363636363636	.	A:4:C:0:G:104:T:0:N:0:O:2	.	3,39,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	3,38,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	27954	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	2,57,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	28219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:1:T:73:N:0:O:1	.	0,38,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:2:G:0:T:94:N:0:O:6	.	0,60,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	28292	C	A	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:79:G:0:T:1:N:0:O:4	.	0,59,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	28723	T	C	T	16	ignore low frequency variant	Pass	False	False	True	241	.	20	.	0.024896265560165973	.	A:1:C:6:G:0:T:229:N:0:O:5	.	0,127,6,114	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:60:C:0:G:2:T:0:N:0:O:1	.	2,5,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:88:G:0:T:2:N:0:O:1	.	0,60,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	28966	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:1:G:66:T:0:N:0:O:0	.	2,3,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:94:G:0:T:0:N:0:O:5	.	1,50,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:112:G:0:T:3:N:0:O:7	.	2,51,1,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:98:C:0:G:3:T:0:N:0:O:0	.	2,41,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:85:C:0:G:3:T:0:N:0:O:1	.	3,12,0,77	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	245	.	20	.	0.024489795918367346	.	A:238:C:0:G:6:T:0:N:0:O:1	.	6,102,0,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:109:T:0:N:0:O:2	.	3,37,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	29801	C	G	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:93:G:3:T:0:N:0:O:2	.	3,30,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00131	artic-pipeline	NB06	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	66	C	T	C	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:37:G:0:T:1:N:0:O:1	.	0,12,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	76	T	C	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:1:G:0:T:26:N:0:O:1	.	0,12,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	77	T	C	T	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:0:C:1:G:0:T:38:N:0:O:0	.	0,11,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	84	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:42:G:0:T:1:N:0:O:4	.	1,15,0,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	128	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,11,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	154	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:41:N:0:O:0	.	0,11,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	156	A	C	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:1:G:0:T:0:N:0:O:1	.	0,12,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	208	G	A	G	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:29:T:0:N:0:O:0	.	0,9,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	209	T	A	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:1:C:0:G:0:T:29:N:0:O:0	.	0,9,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	233	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:31:G:0:T:1:N:0:O:1	.	0,12,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	234	T	C	T	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,10,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	31	.	20	.	0.9354838709677419	.	A:0:C:0:G:0:T:29:N:0:O:2	.	9,11,20,20	560.0	1599.2	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	258	A	G	A	16	ignore low frequency variant	Pass	False	False	True	30	.	20	.	0.03333333333333333	.	A:29:C:0:G:1:T:0:N:0:O:0	.	1,8,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	260	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:27:T:0:N:0:O:1	.	0,7,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	280	C	A	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:1:C:31:G:0:T:0:N:0:O:1	.	1,8,0,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	307	C	T	C	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:0:C:25:G:0:T:1:N:0:O:1	.	1,5,0,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	328	A	T	A	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:22:C:0:G:0:T:1:N:0:O:0	.	0,7,1,16	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	329	C	G	C	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:21:G:1:T:0:N:0:O:1	.	0,8,1,15	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	330	A	C	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:1:G:0:T:0:N:0:O:0	.	0,6,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:1:C:0:G:28:T:0:N:0:O:0	.	0,10,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	27	.	20	.	0.037037037037037035	.	A:25:C:0:G:1:T:0:N:0:O:1	.	1,8,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,28,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	574	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:0:G:3:T:0:N:0:O:1	.	3,49,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	576	T	G	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:0:G:2:T:93:N:0:O:4	.	2,51,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:75:T:0:N:0:O:3	.	3,13,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1039	A	T	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:98:C:0:G:0:T:2:N:0:O:1	.	0,62,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1124	A	T	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:95:C:0:G:0:T:2:N:0:O:1	.	0,40,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:78:T:0:N:0:O:18	.	1,14,2,85	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1185	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:102:G:0:T:3:N:0:O:0	.	0,61,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1343	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:89:N:0:O:1	.	2,38,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:106:G:0:T:3:N:0:O:3	.	0,71,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.05309734513274336	.	A:0:C:6:G:0:T:102:N:0:O:5	.	0,57,6,56	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	1807	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	0,49,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2134	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:2:G:0:T:0:N:0:O:0	.	0,62,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.05747126436781609	.	A:5:C:0:G:82:T:0:N:0:O:0	.	5,24,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	2307	T	A	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:3:C:0:G:0:T:124:N:0:O:1	.	2,60,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2335	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:3:T:115:N:0:O:2	.	0,64,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2404	A	C	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.049586776859504134	.	A:115:C:6:G:0:T:0:N:0:O:0	.	6,49,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.037383177570093455	.	A:103:C:4:G:0:T:0:N:0:O:0	.	4,44,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:96:T:0:N:0:O:4	.	0,35,2,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:1:G:97:T:0:N:0:O:0	.	3,29,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:112:C:0:G:3:T:0:N:0:O:4	.	3,54,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2838	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:77:G:0:T:3:N:0:O:1	.	0,75,3,6	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2839	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:89:N:0:O:2	.	0,71,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:96:C:0:G:2:T:0:N:0:O:0	.	2,29,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	3037	C	T	T	17	accept high frequency variant	Pass	True	True	True	129	.	20	.	0.7596899224806202	.	A:0:C:0:G:0:T:98:N:0:O:31	.	58,89,40,40	64.466	1454.6	.	.	.	.	.	0.15<maf<0.25	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:75:C:0:G:2:T:0:N:0:O:1	.	2,7,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:2:C:0:G:51:T:0:N:0:O:2	.	2,27,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:121:G:0:T:3:N:0:O:2	.	0,95,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:85:T:0:N:0:O:1	.	0,56,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	4303	T	A	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:0:G:0:T:96:N:0:O:18	.	1,70,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	4384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.020202020202020204	.	A:4:C:0:G:194:T:0:N:0:O:0	.	0,161,4,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.037037037037037035	.	A:124:C:0:G:0:T:5:N:0:O:6	.	0,75,5,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:0:G:4:T:120:N:0:O:5	.	0,63,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	5283	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:94:C:0:G:2:T:0:N:0:O:0	.	1,51,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	5305	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:93:T:0:N:0:O:0	.	2,21,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.12987012987012986	.	A:0:C:67:G:0:T:10:N:0:O:0	.	0,64,10,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	5784	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:72:G:0:T:2:N:0:O:6	.	0,37,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:3:G:0:T:79:N:0:O:0	.	0,53,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	5821	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:110:C:0:G:3:T:1:N:0:O:2	.	3,50,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	5823	T	C	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:3:G:0:T:87:N:0:O:0	.	3,51,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.0975609756097561	.	A:0:C:71:G:1:T:8:N:0:O:2	.	0,59,8,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:1:C:93:G:0:T:4:N:0:O:3	.	0,67,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	6266	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:2:C:0:G:76:T:0:N:0:O:2	.	2,28,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	6309	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:76:T:0:N:0:O:5	.	2,20,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	219	.	20	.	0.0273972602739726	.	A:204:C:0:G:6:T:1:N:0:O:8	.	6,96,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	6928	T	C	T	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:1:C:3:G:0:T:120:N:0:O:0	.	0,63,3,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	6935	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:83:N:0:O:0	.	2,30,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	6962	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:0:G:2:T:85:N:0:O:0	.	2,41,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.11702127659574468	.	A:83:C:0:G:0:T:11:N:0:O:0	.	0,65,11,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	7155	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:96:G:0:T:3:N:0:O:4	.	0,72,3,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:91:T:0:N:0:O:1	.	2,32,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	7529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:108:T:0:N:0:O:0	.	3,52,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	7701	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:107:T:0:N:0:O:1	.	3,39,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	7715	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	3,56,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:3:G:0:T:103:N:0:O:0	.	0,64,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:2:C:0:G:69:T:0:N:0:O:2	.	2,10,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0379746835443038	.	A:6:C:0:G:0:T:142:N:0:O:10	.	6,84,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	9280	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	3,41,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	9336	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:90:N:0:O:3	.	0,63,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	9666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:98:G:0:T:2:N:0:O:0	.	0,83,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	9791	G	T	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:1:C:0:G:123:T:4:N:0:O:1	.	0,74,4,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:77:T:0:N:0:O:0	.	1,19,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	10116	C	T	T	14	new position at high frequency	Pass	False	True	True	251	.	20	.	0.9960159362549801	.	A:0:C:0:G:0:T:250:N:0:O:1	.	134,135,116,116	210.0	1451.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	10339	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:89:N:0:O:7	.	0,37,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	10341	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:93:G:0:T:2:N:0:O:0	.	0,32,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	229	.	20	.	0.021834061135371178	.	A:5:C:0:G:221:T:0:N:0:O:3	.	5,95,0,134	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	10697	G	A	A	14	new position at high frequency	Pass	False	True	True	262	.	20	.	0.9732824427480916	.	A:255:C:0:G:2:T:0:N:0:O:5	.	129,134,126,128	209.237	2017.3	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05982905982905983	.	A:0:C:0:G:7:T:110:N:0:O:0	.	0,73,7,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:5:C:101:G:0:T:0:N:0:O:9	.	5,60,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	11079	T	G	T	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:0:C:0:G:1:T:23:N:0:O:0	.	0,7,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:0:T:3:N:0:O:1	.	2,47,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.06382978723404255	.	A:0:C:87:G:0:T:6:N:0:O:1	.	0,57,6,37	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	11846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:0:T:3:N:0:O:0	.	3,62,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	180	.	20	.	0.016666666666666666	.	A:0:C:0:G:124:T:3:N:0:O:53	.	0,74,3,106	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:69:C:0:G:3:T:0:N:0:O:1	.	0,55,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	12149	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:4:C:0:G:134:T:0:N:0:O:2	.	4,33,0,107	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:4:C:0:G:84:T:0:N:0:O:27	.	1,91,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	12422	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:98:C:0:G:2:T:0:N:0:O:3	.	2,33,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:6:C:0:G:88:T:0:N:0:O:4	.	6,27,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,64,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	12853	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:0:C:88:G:0:T:3:N:0:O:0	.	3,38,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:95:C:0:G:3:T:0:N:0:O:2	.	3,33,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	12982	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:83:C:0:G:2:T:0:N:0:O:2	.	2,24,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.05	.	A:0:C:95:G:0:T:5:N:0:O:0	.	0,64,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:1:C:3:G:0:T:119:N:0:O:5	.	0,54,3,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.10975609756097561	.	A:0:C:73:G:0:T:9:N:0:O:0	.	0,70,9,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	13483	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:71:C:0:G:2:T:0:N:0:O:1	.	0,50,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:92:T:0:N:0:O:6	.	2,35,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	13520	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,28,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	13586	T	A	T	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:0:T:104:N:0:O:22	.	3,61,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	97	.	20	.	0.9896907216494846	.	A:0:C:0:G:0:T:96:N:0:O:1	.	49,50,47,47	70.0	1325.3	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:1:C:91:G:0:T:2:N:0:O:0	.	0,63,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:99:G:0:T:3:N:0:O:0	.	0,68,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	14717	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.043478260869565216	.	A:65:C:0:G:3:T:0:N:0:O:1	.	3,32,0,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:103:T:0:N:0:O:1	.	3,35,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	15082	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:121:C:0:G:3:T:0:N:0:O:0	.	3,50,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	15083	T	A	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:0:T:116:N:0:O:0	.	3,46,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	15268	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:87:T:0:N:0:O:10	.	2,26,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.08928571428571429	.	A:0:C:50:G:0:T:5:N:0:O:1	.	0,33,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:104:G:0:T:4:N:0:O:1	.	0,69,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:0:T:2:N:0:O:1	.	2,36,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16267	C	G	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:97:G:2:T:0:N:0:O:0	.	2,36,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16424	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:76:N:0:O:3	.	0,42,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16507	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:95:T:1:N:0:O:0	.	2,39,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:111:T:3:N:0:O:4	.	3,58,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16712	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:115:G:0:T:3:N:0:O:0	.	0,69,3,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.07446808510638298	.	A:7:C:0:G:85:T:0:N:0:O:2	.	7,25,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16825	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:3:C:0:G:74:T:0:N:0:O:7	.	3,21,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:0:G:2:T:98:N:0:O:3	.	0,69,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:2:G:0:T:0:N:0:O:0	.	2,44,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	178	.	20	.	0.028089887640449437	.	A:5:C:0:G:169:T:0:N:0:O:4	.	5,35,0,143	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.03571428571428571	.	A:79:C:0:G:3:T:0:N:0:O:2	.	3,14,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.058823529411764705	.	A:5:C:0:G:0:T:76:N:0:O:4	.	5,19,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0547945205479452	.	A:0:C:69:G:0:T:4:N:0:O:0	.	0,47,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:88:C:0:G:0:T:2:N:0:O:10	.	0,45,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.12280701754385964	.	A:14:C:0:G:100:T:0:N:0:O:0	.	0,63,14,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17927	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:101:G:0:T:3:N:0:O:1	.	0,64,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.05454545454545454	.	A:6:C:0:G:104:T:0:N:0:O:0	.	6,47,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.041666666666666664	.	A:88:C:0:G:4:T:0:N:0:O:4	.	4,32,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.05333333333333334	.	A:4:C:0:G:71:T:0:N:0:O:0	.	4,24,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.027777777777777776	.	A:0:C:140:G:0:T:4:N:0:O:0	.	0,94,4,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:1:G:2:T:87:N:0:O:1	.	1,31,1,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	18469	G	A	G	16	ignore low frequency variant	Pass	False	False	True	150	.	20	.	0.02	.	A:3:C:0:G:143:T:0:N:0:O:4	.	3,68,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:32:C:0:G:0:T:1:N:0:O:4	.	0,20,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	18783	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:95:N:0:O:0	.	2,42,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	18877	C	T	T	17	accept high frequency variant	Pass	False	True	True	132	.	20	.	0.9848484848484849	.	A:0:C:0:G:0:T:130:N:0:O:2	.	66,68,64,64	70.0	1761.0	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	18947	T	C	T	16	ignore low frequency variant	Pass	False	False	True	258	.	20	.	0.023255813953488372	.	A:0:C:6:G:0:T:242:N:0:O:10	.	0,164,6,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:0:G:110:T:0:N:0:O:1	.	3,27,0,87	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.04477611940298507	.	A:0:C:63:G:0:T:3:N:0:O:1	.	0,53,3,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	19563	G	T	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:1:C:0:G:80:T:2:N:0:O:0	.	2,21,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	19724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:0:C:3:G:0:T:116:N:0:O:0	.	0,68,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.017964071856287425	.	A:3:C:0:G:0:T:134:N:0:O:30	.	0,75,3,92	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:90:N:0:O:3	.	0,61,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	19846	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:96:T:0:N:0:O:3	.	2,73,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	19847	G	A	A	17	accept high frequency variant	Pass	False	True	True	93	.	20	.	1.0	.	A:93:C:0:G:0:T:0:N:0:O:0	.	67,67,26,26	350.0	1902.2	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	20067	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:78:C:0:G:3:T:0:N:0:O:0	.	3,20,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	20069	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:0:C:0:G:132:T:4:N:0:O:0	.	4,71,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	20686	G	T	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:2:C:0:G:127:T:3:N:0:O:4	.	3,60,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:93:C:0:G:3:T:0:N:0:O:4	.	3,29,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.0707070707070707	.	A:0:C:0:G:87:T:7:N:0:O:5	.	0,67,7,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:103:G:0:T:3:N:0:O:0	.	0,59,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.017857142857142856	.	A:1:C:0:G:0:T:40:N:0:O:15	.	1,44,0,12	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21444	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.03225806451612903	.	A:90:C:0:G:0:T:3:N:0:O:0	.	3,28,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:86:T:0:N:0:O:2	.	2,15,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21558	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:3:C:0:G:113:T:0:N:0:O:1	.	2,48,1,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.046511627906976744	.	A:0:C:75:G:0:T:4:N:0:O:7	.	1,28,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21743	A	C	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:125:C:3:G:0:T:0:N:0:O:0	.	0,73,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:85:G:0:T:2:N:0:O:5	.	0,72,2,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	21773	T	C	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:0:C:3:G:0:T:83:N:0:O:1	.	0,70,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:3:C:0:G:108:T:0:N:0:O:10	.	2,55,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	21911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:97:G:0:T:3:N:0:O:0	.	0,34,3,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.046153846153846156	.	A:0:C:0:G:6:T:124:N:0:O:0	.	6,44,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:130:G:0:T:3:N:0:O:2	.	0,91,3,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	22326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:83:G:0:T:2:N:0:O:1	.	1,65,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	22526	C	T	C	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:124:G:0:T:3:N:0:O:0	.	2,60,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.02666666666666667	.	A:0:C:0:G:219:T:6:N:0:O:0	.	0,141,6,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	22954	T	G	T	16	ignore low frequency variant	Pass	False	False	True	295	.	20	.	0.020338983050847456	.	A:0:C:0:G:6:T:244:N:0:O:45	.	0,164,6,131	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.02040816326530612	.	A:0:C:174:G:0:T:4:N:0:O:18	.	0,163,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23264	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,35,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	138	.	20	.	0.9202898550724637	.	A:0:C:0:G:127:T:0:N:0:O:11	.	66,77,61,61	70.0	1646.9	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.04716981132075472	.	A:5:C:0:G:97:T:0:N:0:O:4	.	5,22,0,84	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23623	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:84:C:0:G:2:T:0:N:0:O:0	.	2,29,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23655	C	G	C	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:140:G:3:T:0:N:0:O:1	.	3,68,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:100:G:0:T:4:N:0:O:0	.	0,69,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:83:G:0:T:2:N:0:O:6	.	0,54,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23901	A	G	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:71:C:1:G:2:T:0:N:0:O:0	.	1,30,1,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03759398496240601	.	A:128:C:0:G:0:T:5:N:0:O:0	.	4,67,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.058823529411764705	.	A:4:C:0:G:0:T:64:N:0:O:0	.	4,17,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:4:C:0:G:81:T:0:N:0:O:0	.	4,19,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,22,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24240	C	T	C	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:0:C:73:G:0:T:2:N:0:O:2	.	0,62,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.04054054054054054	.	A:0:C:67:G:0:T:3:N:0:O:4	.	0,64,3,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24278	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:0:T:76:N:0:O:1	.	2,19,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:91:N:0:O:1	.	2,26,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24420	A	G	A	16	ignore low frequency variant	Pass	False	False	True	201	.	20	.	0.01990049751243781	.	A:193:C:0:G:4:T:0:N:0:O:4	.	4,77,0,124	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:126:G:0:T:1:N:0:O:2	.	3,62,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24619	A	G	A	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.026490066225165563	.	A:144:C:0:G:4:T:0:N:0:O:3	.	4,71,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:106:C:3:G:0:T:0:N:0:O:1	.	3,54,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24777	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:92:C:0:G:3:T:0:N:0:O:0	.	3,33,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	30	.	20	.	0.03333333333333333	.	A:0:C:1:G:0:T:29:N:0:O:0	.	0,21,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:99:N:0:O:1	.	3,33,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	25455	G	T	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.11214953271028037	.	A:0:C:0:G:95:T:12:N:0:O:0	.	9,40,3,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	25462	A	T	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:118:C:0:G:0:T:3:N:0:O:4	.	3,58,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:117:C:0:G:0:T:3:N:0:O:1	.	3,58,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	124	.	20	.	1.0	.	A:0:C:0:G:0:T:124:N:0:O:0	.	60,60,64,64	210.0	2095.4	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	25769	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:74:T:1:N:0:O:0	.	2,13,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.1016949152542373	.	A:52:C:6:G:0:T:0:N:0:O:1	.	0,30,6,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:104:G:0:T:4:N:0:O:0	.	0,63,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:94:G:0:T:2:N:0:O:1	.	2,47,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	26125	C	A	C	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.0189873417721519	.	A:3:C:138:G:0:T:0:N:0:O:17	.	3,60,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26222	C	A	C	16	ignore low frequency variant	Pass	False	False	True	198	.	20	.	0.025252525252525252	.	A:5:C:189:G:0:T:0:N:0:O:4	.	0,127,5,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26408	C	T	C	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:0:C:78:G:0:T:4:N:0:O:29	.	0,93,4,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	26409	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	0,47,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,58,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:86:T:0:N:0:O:1	.	2,36,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26529	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:88:T:0:N:0:O:4	.	2,27,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,24,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.02857142857142857	.	A:0:C:168:G:0:T:5:N:0:O:2	.	0,141,5,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26551	T	C	T	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.03365384615384615	.	A:0:C:7:G:0:T:201:N:0:O:0	.	0,145,7,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26661	T	C	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:3:G:0:T:99:N:0:O:0	.	0,68,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:87:C:0:G:0:T:5:N:0:O:4	.	5,25,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.06976744186046512	.	A:6:C:0:G:80:T:0:N:0:O:0	.	6,15,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.05813953488372093	.	A:0:C:81:G:0:T:5:N:0:O:0	.	0,63,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:76:T:0:N:0:O:0	.	4,19,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.08235294117647059	.	A:0:C:77:G:0:T:7:N:0:O:1	.	0,64,7,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:0:C:79:G:1:T:2:N:0:O:1	.	0,65,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:95:N:0:O:0	.	0,54,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27689	C	A	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:3:C:90:G:0:T:0:N:0:O:1	.	3,47,0,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27691	A	T	A	16	ignore low frequency variant	Pass	False	False	True	149	.	20	.	0.020134228187919462	.	A:114:C:0:G:0:T:3:N:0:O:32	.	3,95,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:0:G:102:T:0:N:0:O:0	.	4,40,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:104:C:0:G:4:T:0:N:0:O:0	.	4,38,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	28279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:2:G:0:T:88:N:0:O:14	.	0,63,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	28480	A	T	T	17	accept high frequency variant	Pass	False	True	True	120	.	20	.	1.0	.	A:0:C:0:G:0:T:120:N:0:O:0	.	56,56,64,64	57.476	1731.5	.	.	.	.	.	.	.	.	.
MDHP-00132	artic-pipeline	NB07	MN908947.3	28671	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:4:G:0:T:93:N:0:O:0	.	0,63,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	61	.	20	.	0.03278688524590164	.	A:57:C:0:G:2:T:0:N:0:O:2	.	2,7,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:93:G:0:T:2:N:0:O:5	.	0,60,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:5:C:0:G:84:T:0:N:0:O:0	.	5,20,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29063	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,30,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29170	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:2:T:0:N:0:O:0	.	2,51,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29194	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:94:N:0:O:1	.	2,46,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:40:C:0:G:1:T:0:N:0:O:1	.	1,3,0,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:84:T:0:N:0:O:1	.	3,18,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:75:C:0:G:2:T:0:N:0:O:2	.	2,14,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:73:T:0:N:0:O:14	.	3,24,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	29437	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:121:C:0:G:3:T:0:N:0:O:0	.	3,51,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00132	artic-pipeline	NB07	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	152	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	126	A	G	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:0:G:1:T:0:N:0:O:0	.	1,5,0,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	196	A	G	A	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:20:C:0:G:1:T:0:N:0:O:0	.	1,7,0,14	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	20	.	20	.	0.95	.	A:0:C:0:G:0:T:19:N:0:O:1	.	8,9,11,11	486.227	901.0	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	254	C	G	C	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:0:C:19:G:1:T:0:N:0:O:0	.	1,9,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	308	C	G	C	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:21:G:1:T:0:N:0:O:0	.	1,11,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	432	T	C	T	16	ignore low frequency variant	Pass	False	False	True	142	.	20	.	0.035211267605633804	.	A:0:C:5:G:0:T:137:N:0:O:0	.	0,89,5,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	456	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:3:G:0:T:94:N:0:O:11	.	3,34,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:0:C:3:G:0:T:101:N:0:O:1	.	0,64,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	1541	C	T	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:122:G:0:T:3:N:0:O:5	.	0,71,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	1636	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:70:T:0:N:0:O:3	.	0,7,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	1698	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,60,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:98:N:0:O:6	.	0,53,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:61:C:0:G:2:T:0:N:0:O:0	.	0,8,2,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.0967741935483871	.	A:9:C:0:G:83:T:0:N:0:O:1	.	9,28,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	2202	G	T	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:0:G:89:T:2:N:0:O:1	.	2,31,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	143	.	20	.	1.0	.	A:0:C:0:G:0:T:143:N:0:O:0	.	71,71,72,72	279.237	1520.0	.	.	.	.	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	2494	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:94:T:0:N:0:O:3	.	0,38,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	2527	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	1,24,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	2808	G	A	G	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:3:C:0:G:99:T:0:N:0:O:1	.	2,40,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:105:C:0:G:3:T:0:N:0:O:3	.	3,59,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	119	.	20	.	0.680672268907563	.	A:0:C:0:G:0:T:81:N:0:O:38	.	42,80,39,39	330.412	1445.6	.	.	.	.	mixed position	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:0:G:73:T:5:N:0:O:18	.	1,71,4,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	3198	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:109:C:0:G:4:T:0:N:0:O:2	.	4,10,0,105	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	3199	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.043478260869565216	.	A:0:C:0:G:5:T:110:N:0:O:0	.	5,12,0,103	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	3300	T	A	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:3:C:0:G:0:T:116:N:0:O:0	.	0,64,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	3418	G	A	G	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:3:C:0:G:104:T:0:N:0:O:0	.	1,8,2,99	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:0:C:82:G:0:T:5:N:0:O:2	.	0,69,5,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:0:G:90:T:3:N:0:O:6	.	3,57,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	4179	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:45:C:0:G:1:T:0:N:0:O:0	.	0,6,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	4236	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:81:C:0:G:2:T:0:N:0:O:0	.	2,34,0,49	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	4301	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:0:C:55:G:0:T:2:N:0:O:5	.	0,51,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	202	.	20	.	0.034653465346534656	.	A:0:C:0:G:183:T:7:N:0:O:12	.	0,150,7,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:100:C:0:G:0:T:3:N:0:O:6	.	0,56,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	4847	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:96:G:0:T:3:N:0:O:3	.	0,70,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	4924	T	G	T	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.024793388429752067	.	A:0:C:0:G:3:T:115:N:0:O:3	.	0,65,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:119:C:4:G:0:T:0:N:0:O:4	.	0,63,4,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5384	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,39,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5402	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:84:G:0:T:2:N:0:O:2	.	1,53,1,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5550	T	C	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:2:G:0:T:76:N:0:O:1	.	0,48,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5623	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:2:G:0:T:86:N:0:O:0	.	2,29,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.08064516129032258	.	A:0:C:56:G:0:T:5:N:0:O:1	.	0,54,5,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5739	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	2,41,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	5946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:107:G:0:T:3:N:0:O:0	.	2,52,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:0:C:91:G:0:T:5:N:0:O:0	.	0,73,5,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6203	A	T	A	16	ignore low frequency variant	Pass	False	False	True	225	.	20	.	0.022222222222222223	.	A:218:C:0:G:0:T:5:N:0:O:2	.	5,79,0,146	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:1:C:95:G:0:T:4:N:0:O:2	.	0,67,4,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:0:G:3:T:107:N:0:O:3	.	0,72,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:0:C:0:G:3:T:113:N:0:O:4	.	0,72,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6682	T	C	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:3:G:0:T:116:N:0:O:3	.	0,71,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6696	C	T	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.017699115044247787	.	A:0:C:93:G:0:T:2:N:0:O:18	.	1,81,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	218	.	20	.	0.022935779816513763	.	A:205:C:0:G:5:T:2:N:0:O:6	.	5,90,0,128	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	206	.	20	.	0.019417475728155338	.	A:0:C:195:G:0:T:4:N:0:O:7	.	0,129,4,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	6884	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,34,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.07608695652173914	.	A:84:C:0:G:0:T:7:N:0:O:1	.	0,74,7,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:0:G:93:T:0:N:0:O:1	.	3,24,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:87:G:1:T:4:N:0:O:27	.	0,88,4,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	7692	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,47,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	7787	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:84:T:0:N:0:O:5	.	2,47,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.04597701149425287	.	A:83:C:4:G:0:T:0:N:0:O:0	.	4,36,0,51	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	7862	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:0:T:2:N:0:O:0	.	2,45,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8013	G	A	G	16	ignore low frequency variant	Pass	False	False	True	194	.	20	.	0.020618556701030927	.	A:4:C:0:G:190:T:0:N:0:O:0	.	3,95,1,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8338	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	1,25,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8341	T	G	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:1:T:47:N:0:O:0	.	0,29,1,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8368	G	C	G	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:40:T:0:N:0:O:0	.	1,27,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8388	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:0:G:1:T:0:N:0:O:0	.	1,24,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8389	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	1,26,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	8440	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:0:T:1:N:0:O:0	.	1,19,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8496	G	A	G	16	ignore low frequency variant	Pass	False	False	True	39	.	20	.	0.02564102564102564	.	A:1:C:0:G:38:T:0:N:0:O:0	.	1,20,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8498	G	T	G	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:0:G:43:T:1:N:0:O:1	.	1,26,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8552	G	A	G	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:1:C:0:G:49:T:0:N:0:O:2	.	1,26,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8553	G	T	G	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:0:G:48:T:1:N:0:O:1	.	1,23,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	41	.	20	.	0.024390243902439025	.	A:0:C:1:G:0:T:40:N:0:O:0	.	0,30,1,11	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8608	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,18,1,3	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8627	T	A	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:3:C:0:G:0:T:131:N:0:O:18	.	0,90,3,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8676	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:68:T:0:N:0:O:1	.	1,32,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8715	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.03529411764705882	.	A:0:C:81:G:0:T:3:N:0:O:1	.	1,54,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8850	T	G	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:0:G:2:T:84:N:0:O:11	.	0,69,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8887	A	T	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:67:C:0:G:0:T:2:N:0:O:2	.	2,11,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8888	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:0:C:67:G:0:T:2:N:0:O:2	.	2,10,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.04	.	A:3:C:0:G:69:T:0:N:0:O:3	.	3,10,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	174	.	20	.	0.022988505747126436	.	A:4:C:2:G:0:T:158:N:0:O:10	.	4,76,0,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:135:G:0:T:3:N:0:O:3	.	1,71,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9235	A	T	A	16	ignore low frequency variant	Pass	False	False	True	282	.	20	.	0.02127659574468085	.	A:274:C:0:G:0:T:6:N:0:O:2	.	0,128,6,154	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9237	G	C	G	16	ignore low frequency variant	Pass	False	False	True	256	.	20	.	0.0234375	.	A:0:C:6:G:250:T:0:N:0:O:0	.	0,96,6,160	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9281	C	A	C	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:1:C:38:G:0:T:0:N:0:O:3	.	0,20,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.019230769230769232	.	A:0:C:49:G:0:T:1:N:0:O:2	.	0,32,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	9389	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:1:C:0:G:46:T:0:N:0:O:0	.	1,37,0,10	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9390	A	G	A	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:43:C:0:G:1:T:0:N:0:O:1	.	1,36,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9538	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:70:C:0:G:2:T:0:N:0:O:5	.	2,51,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9575	G	T	G	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.018867924528301886	.	A:0:C:0:G:48:T:1:N:0:O:4	.	0,25,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9584	G	A	G	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.06382978723404255	.	A:3:C:0:G:42:T:0:N:0:O:2	.	2,18,1,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9588	T	C	T	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:1:G:0:T:37:N:0:O:0	.	0,10,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9606	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	1,19,0,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9640	T	C	T	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:1:G:0:T:47:N:0:O:0	.	0,22,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9656	A	T	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:46:C:0:G:0:T:1:N:0:O:3	.	1,23,0,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9664	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:32:C:0:G:0:T:1:N:0:O:1	.	1,16,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9671	G	A	G	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:1:C:0:G:45:T:0:N:0:O:0	.	0,20,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9672	T	A	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:1:C:0:G:0:T:43:N:0:O:0	.	0,21,1,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9693	C	T	C	16	ignore low frequency variant	Pass	False	False	True	33	.	20	.	0.030303030303030304	.	A:0:C:32:G:0:T:1:N:0:O:0	.	0,17,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	9696	A	T	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:48:C:0:G:0:T:1:N:0:O:0	.	0,22,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9733	C	T	C	16	ignore low frequency variant	Pass	False	False	True	38	.	20	.	0.02631578947368421	.	A:0:C:36:G:0:T:1:N:0:O:1	.	0,25,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	9734	T	C	T	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:0:C:1:G:0:T:43:N:0:O:0	.	0,23,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9738	G	T	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:0:C:0:G:47:T:1:N:0:O:0	.	1,18,0,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9782	A	T	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:0:T:1:N:0:O:0	.	1,18,0,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9787	T	A	T	16	ignore low frequency variant	Pass	False	False	True	31	.	20	.	0.03225806451612903	.	A:1:C:0:G:0:T:30:N:0:O:0	.	1,22,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9789	T	C	T	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:0:C:1:G:0:T:40:N:0:O:1	.	1,23,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9795	A	G	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:1:T:0:N:0:O:0	.	1,20,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	9968	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,14,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	10283	G	T	G	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:0:C:0:G:122:T:3:N:0:O:2	.	0,69,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,23,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	10400	G	A	G	16	ignore low frequency variant	Pass	False	False	True	239	.	20	.	0.02092050209205021	.	A:5:C:0:G:234:T:0:N:0:O:0	.	5,86,0,153	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.058823529411764705	.	A:95:C:0:G:6:T:0:N:0:O:1	.	6,39,0,63	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.02304147465437788	.	A:0:C:5:G:0:T:211:N:0:O:1	.	0,139,5,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:0:C:94:G:0:T:5:N:0:O:0	.	0,64,5,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	10862	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:73:T:0:N:0:O:0	.	2,7,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.02040816326530612	.	A:0:C:1:G:0:T:47:N:0:O:1	.	0,46,1,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:0:C:92:G:0:T:2:N:0:O:13	.	0,73,2,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11480	T	C	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:2:G:0:T:91:N:0:O:0	.	0,60,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:106:C:0:G:0:T:4:N:0:O:1	.	4,44,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11576	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:119:C:0:G:1:T:3:N:0:O:1	.	2,62,1,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:0:C:122:G:0:T:4:N:0:O:3	.	0,75,4,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.024193548387096774	.	A:120:C:0:G:0:T:3:N:0:O:1	.	3,52,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	11868	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:0:C:101:G:0:T:4:N:0:O:1	.	0,67,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:0:C:87:G:0:T:2:N:0:O:23	.	0,85,2,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12269	G	A	G	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:4:C:0:G:98:T:0:N:0:O:22	.	0,98,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12270	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:103:C:0:G:3:T:0:N:0:O:0	.	2,61,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:130:G:0:T:3:N:0:O:5	.	2,64,1,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12420	C	T	C	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.029411764705882353	.	A:1:C:120:G:0:T:4:N:0:O:11	.	0,89,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.052083333333333336	.	A:5:C:0:G:85:T:0:N:0:O:6	.	5,23,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12625	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:3:G:0:T:98:N:0:O:2	.	2,69,1,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12659	A	G	A	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:64:C:0:G:2:T:1:N:0:O:0	.	1,28,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.05263157894736842	.	A:0:C:71:G:0:T:4:N:0:O:1	.	0,63,4,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	12856	T	C	T	16	ignore low frequency variant	Pass	False	False	True	152	.	20	.	0.019736842105263157	.	A:1:C:3:G:0:T:140:N:0:O:8	.	1,84,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13279	T	C	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:0:C:3:G:0:T:105:N:0:O:7	.	1,47,2,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:68:G:0:T:3:N:0:O:0	.	1,68,2,3	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:5:C:0:G:83:T:0:N:0:O:7	.	5,31,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13585	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:69:G:0:T:2:N:0:O:1	.	1,36,1,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:90:G:0:T:0:N:0:O:6	.	3,37,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13690	G	A	G	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.0425531914893617	.	A:6:C:0:G:131:T:0:N:0:O:4	.	6,32,0,109	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13762	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.031007751937984496	.	A:4:C:0:G:125:T:0:N:0:O:0	.	4,36,0,93	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:50:C:0:G:2:T:0:N:0:O:1	.	0,5,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14084	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:112:C:0:G:3:T:0:N:0:O:0	.	3,50,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14107	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:93:C:0:G:0:T:2:N:0:O:0	.	2,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	86	.	20	.	0.9651162790697675	.	A:0:C:1:G:0:T:83:N:0:O:2	.	47,50,36,36	393.588	1249.4	.	.	.	.	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	14539	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:102:C:0:G:3:T:0:N:0:O:1	.	2,43,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14540	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:120:T:0:N:0:O:21	.	3,69,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.061224489795918366	.	A:0:C:92:G:0:T:6:N:0:O:0	.	0,66,6,32	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14763	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,72,2,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14970	T	G	T	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.03007518796992481	.	A:1:C:0:G:4:T:121:N:0:O:7	.	4,71,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	14971	A	T	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.038834951456310676	.	A:98:C:0:G:1:T:4:N:0:O:0	.	4,41,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:91:T:0:N:0:O:2	.	3,29,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:3:G:0:T:67:N:0:O:1	.	0,64,3,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	15103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:0:C:73:G:0:T:2:N:0:O:1	.	0,65,2,11	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	15824	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:142:G:0:T:3:N:0:O:0	.	0,87,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	15825	T	C	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:0:C:3:G:0:T:137:N:0:O:4	.	0,84,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.014705882352941176	.	A:0:C:1:G:0:T:49:N:0:O:18	.	1,42,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	51	.	20	.	0.0784313725490196	.	A:1:C:46:G:0:T:4:N:0:O:0	.	1,27,3,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:109:G:0:T:4:N:0:O:2	.	0,72,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	16191	A	G	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:48:C:0:G:1:T:0:N:0:O:1	.	1,27,0,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16198	T	C	T	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:0:C:1:G:0:T:33:N:0:O:0	.	0,16,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16203	T	G	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:0:G:1:T:39:N:0:O:3	.	0,26,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16220	C	T	C	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:0:C:27:G:0:T:1:N:0:O:0	.	0,19,1,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:42:C:0:G:1:T:0:N:0:O:0	.	1,24,0,19	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16259	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:33:T:0:N:0:O:0	.	1,18,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16266	A	G	A	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:24:C:0:G:1:T:0:N:0:O:0	.	0,12,1,13	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16313	G	A	G	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:1:C:0:G:36:T:0:N:0:O:0	.	1,19,0,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16325	G	A	G	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:1:C:0:G:33:T:0:N:0:O:0	.	1,18,0,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16336	G	T	G	16	ignore low frequency variant	Pass	False	False	True	48	.	20	.	0.020833333333333332	.	A:1:C:0:G:44:T:1:N:0:O:2	.	0,26,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16342	T	C	T	16	ignore low frequency variant	Pass	False	False	True	40	.	20	.	0.025	.	A:0:C:1:G:0:T:39:N:0:O:0	.	1,23,0,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16412	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:42:C:0:G:1:T:0:N:0:O:3	.	1,25,0,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16415	T	G	T	16	ignore low frequency variant	Pass	False	False	True	37	.	20	.	0.02702702702702703	.	A:0:C:0:G:1:T:36:N:0:O:0	.	0,21,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16418	C	T	C	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:42:G:0:T:1:N:0:O:0	.	0,25,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16444	T	C	T	16	ignore low frequency variant	Pass	False	False	True	43	.	20	.	0.023255813953488372	.	A:0:C:1:G:0:T:42:N:0:O:0	.	0,26,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:0:C:0:G:106:T:3:N:0:O:2	.	2,57,1,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:81:C:2:G:0:T:1:N:0:O:0	.	2,42,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17100	G	A	G	16	ignore low frequency variant	Pass	False	False	True	177	.	20	.	0.02824858757062147	.	A:5:C:0:G:170:T:0:N:0:O:2	.	5,42,0,135	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	196	.	20	.	0.025510204081632654	.	A:189:C:0:G:5:T:0:N:0:O:2	.	5,67,0,129	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17133	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:96:G:0:T:2:N:0:O:0	.	0,70,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17134	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:0:C:82:G:0:T:2:N:0:O:4	.	0,71,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17200	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:0:T:69:N:0:O:5	.	2,15,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17434	G	A	G	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:3:C:0:G:126:T:2:N:0:O:0	.	3,56,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17447	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:126:C:3:G:0:T:0:N:0:O:0	.	3,50,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:0:C:128:G:0:T:3:N:0:O:0	.	0,86,3,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.06140350877192982	.	A:0:C:106:G:0:T:7:N:0:O:1	.	0,61,7,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17824	A	G	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:88:C:0:G:2:T:0:N:0:O:2	.	2,38,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.0425531914893617	.	A:0:C:45:G:0:T:2:N:0:O:0	.	0,29,2,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.08860759493670886	.	A:7:C:0:G:72:T:0:N:0:O:0	.	0,48,7,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17876	C	A	C	16	ignore low frequency variant	Pass	False	False	True	60	.	20	.	0.03333333333333333	.	A:2:C:56:G:0:T:0:N:0:O:2	.	1,21,1,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	56	.	20	.	0.05357142857142857	.	A:3:C:0:G:52:T:1:N:0:O:0	.	3,15,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	17989	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	0,43,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.0380952380952381	.	A:0:C:0:G:4:T:101:N:0:O:0	.	3,35,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	18568	C	T	C	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:1:C:146:G:0:T:4:N:0:O:3	.	3,99,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:0:G:71:T:0:N:0:O:2	.	2,24,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:0:G:111:T:0:N:0:O:3	.	4,32,0,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	19266	T	A	T	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.020942408376963352	.	A:4:C:1:G:0:T:185:N:0:O:1	.	0,116,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	19339	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:2:T:0:N:0:O:2	.	2,31,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.07142857142857142	.	A:0:C:65:G:0:T:5:N:0:O:0	.	0,58,5,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:3:G:0:T:97:N:0:O:4	.	0,67,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	19985	T	C	T	16	ignore low frequency variant	Pass	False	False	True	52	.	20	.	0.038461538461538464	.	A:0:C:2:G:0:T:50:N:0:O:0	.	2,38,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:0:C:0:G:3:T:105:N:0:O:0	.	3,55,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	20761	A	G	A	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.03067484662576687	.	A:158:C:0:G:5:T:0:N:0:O:0	.	5,66,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:91:C:0:G:5:T:0:N:0:O:3	.	5,29,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:2:C:0:G:93:T:0:N:0:O:7	.	1,24,1,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.1	.	A:0:C:0:G:5:T:45:N:0:O:0	.	5,10,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.11764705882352941	.	A:0:C:0:G:71:T:10:N:0:O:4	.	0,59,10,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.047058823529411764	.	A:0:C:80:G:0:T:4:N:0:O:1	.	0,55,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21220	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.06097560975609756	.	A:5:C:0:G:76:T:0:N:0:O:1	.	3,31,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21279	T	G	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:1:G:3:T:104:N:0:O:17	.	2,45,1,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21363	T	C	T	16	ignore low frequency variant	Pass	False	False	True	59	.	20	.	0.01694915254237288	.	A:1:C:1:G:0:T:37:N:0:O:20	.	0,44,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21409	C	T	C	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:119:G:0:T:3:N:0:O:0	.	2,101,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21431	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:76:G:0:T:2:N:0:O:0	.	0,52,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:3:C:0:G:80:T:0:N:0:O:3	.	3,18,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21489	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:79:C:0:G:2:T:0:N:0:O:0	.	0,18,2,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21569	G	T	G	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.01744186046511628	.	A:0:C:0:G:137:T:3:N:0:O:32	.	3,103,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21570	T	G	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:0:G:3:T:100:N:0:O:0	.	3,46,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:0:C:83:G:0:T:4:N:0:O:4	.	2,25,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21772	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:92:G:0:T:3:N:0:O:7	.	0,86,3,16	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	21792	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:124:C:0:G:3:T:0:N:0:O:0	.	3,39,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	160	.	20	.	0.03125	.	A:5:C:0:G:142:T:0:N:0:O:13	.	5,73,0,87	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:105:T:1:N:0:O:0	.	3,50,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:0:G:4:T:109:N:0:O:0	.	4,28,0,85	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	22313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.02097902097902098	.	A:0:C:139:G:0:T:3:N:0:O:1	.	0,85,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	22326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	0,38,1,12	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	22375	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:68:C:0:G:2:T:0:N:0:O:0	.	2,29,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	22446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:43:G:0:T:1:N:0:O:1	.	1,30,0,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:25:C:0:G:1:T:0:N:0:O:0	.	0,4,1,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	55	.	20	.	0.03636363636363636	.	A:0:C:0:G:2:T:52:N:0:O:1	.	2,14,0,41	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	183	.	20	.	0.02185792349726776	.	A:0:C:0:G:178:T:4:N:0:O:1	.	0,113,4,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	138	.	20	.	0.8985507246376812	.	A:0:C:0:G:124:T:0:N:0:O:14	.	62,76,62,62	63.216	1639.1	.	.	.	.	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	23645	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,53,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	23833	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:117:G:0:T:3:N:0:O:6	.	0,57,3,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:82:C:0:G:3:T:0:N:0:O:1	.	2,16,1,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.06206896551724138	.	A:136:C:0:G:0:T:9:N:0:O:0	.	8,69,1,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.13043478260869565	.	A:9:C:0:G:0:T:60:N:0:O:0	.	8,16,1,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:3:C:0:G:77:T:0:N:0:O:1	.	3,16,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:3:C:0:G:84:T:0:N:0:O:1	.	3,20,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24245	C	T	C	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:64:G:0:T:2:N:0:O:8	.	0,67,2,7	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24297	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,49,2,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24398	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:0:G:102:T:3:N:0:O:1	.	0,49,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:4:C:114:G:0:T:3:N:0:O:2	.	4,57,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:121:C:1:G:0:T:4:N:0:O:8	.	4,78,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:90:C:2:G:0:T:0:N:0:O:1	.	2,43,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	0,63,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:1:G:2:T:84:N:0:O:0	.	0,58,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	33	.	20	.	0.06060606060606061	.	A:0:C:2:G:0:T:28:N:0:O:3	.	2,24,0,9	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	25197	G	A	G	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:4:C:0:G:114:T:0:N:0:O:0	.	4,52,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25362	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:2:C:0:G:81:T:0:N:0:O:0	.	2,23,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:89:C:0:G:3:T:0:N:0:O:4	.	3,20,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:104:C:0:G:0:T:3:N:0:O:0	.	3,49,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:102:C:0:G:3:T:0:N:0:O:1	.	3,39,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25517	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:74:G:0:T:2:N:0:O:2	.	2,52,0,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:75:G:0:T:2:N:0:O:1	.	1,60,1,18	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	114	.	20	.	1.0	.	A:0:C:0:G:0:T:114:N:0:O:0	.	47,47,67,67	350.0	1925.2	.	.	.	.	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	25588	A	C	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:68:C:2:G:0:T:0:N:0:O:0	.	2,25,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25796	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:80:G:0:T:2:N:0:O:7	.	2,30,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:3:C:79:G:0:T:0:N:0:O:44	.	3,37,0,89	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.14285714285714285	.	A:42:C:7:G:0:T:0:N:0:O:0	.	2,23,5,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:80:G:1:T:2:N:0:O:1	.	0,41,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:0:C:89:G:0:T:2:N:0:O:0	.	1,59,1,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25847	A	T	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:77:C:0:G:0:T:3:N:0:O:3	.	0,62,3,21	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25876	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:97:C:0:G:2:T:0:N:0:O:3	.	2,29,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:76:C:0:G:2:T:0:N:0:O:1	.	2,17,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	25886	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:84:G:0:T:4:N:0:O:2	.	3,50,1,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	26116	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,5,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26224	C	T	C	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.024390243902439025	.	A:1:C:193:G:1:T:5:N:0:O:5	.	0,134,5,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26505	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:131:T:3:N:0:O:0	.	0,81,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:2:C:0:G:92:T:0:N:0:O:0	.	2,44,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26536	A	G	A	16	ignore low frequency variant	Pass	False	False	True	131	.	20	.	0.022900763358778626	.	A:128:C:0:G:3:T:0:N:0:O:0	.	3,62,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,39,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:0:C:122:G:0:T:4:N:0:O:2	.	4,62,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.043478260869565216	.	A:128:C:0:G:0:T:6:N:0:O:4	.	6,38,0,100	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.05982905982905983	.	A:7:C:0:G:110:T:0:N:0:O:0	.	7,15,0,102	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26713	G	T	G	16	ignore low frequency variant	Pass	False	False	True	254	.	20	.	0.01968503937007874	.	A:0:C:0:G:215:T:5:N:0:O:34	.	5,153,0,101	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	26714	T	G	T	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.021505376344086023	.	A:0:C:0:G:4:T:181:N:0:O:1	.	4,92,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26753	C	T	C	16	ignore low frequency variant	Pass	False	False	True	165	.	20	.	0.024242424242424242	.	A:0:C:159:G:0:T:4:N:0:O:2	.	1,126,3,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26893	T	C	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:0:C:2:G:0:T:69:N:0:O:7	.	0,61,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26897	T	C	T	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:0:C:3:G:0:T:113:N:0:O:1	.	0,62,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	26927	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	0,53,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	27048	C	T	C	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:79:G:0:T:2:N:0:O:4	.	2,33,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27076	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:88:C:0:G:2:T:0:N:0:O:0	.	2,22,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.08823529411764706	.	A:0:C:62:G:0:T:6:N:0:O:0	.	0,59,6,9	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:0:C:79:G:0:T:3:N:0:O:0	.	0,67,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27107	A	G	A	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:78:C:0:G:2:T:0:N:0:O:1	.	0,58,2,23	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27560	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:0:C:2:G:0:T:94:N:0:O:1	.	0,64,2,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27664	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:98:T:0:N:0:O:0	.	2,32,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27890	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:106:T:0:N:0:O:0	.	3,37,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	27891	A	G	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:3:T:0:N:0:O:0	.	3,37,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:3:C:81:G:0:T:1:N:0:O:12	.	3,69,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	28408	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:88:C:0:G:1:T:2:N:0:O:2	.	2,21,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:70:G:0:T:2:N:0:O:8	.	0,33,2,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	28412	A	C	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:2:G:0:T:1:N:0:O:0	.	0,55,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	28699	A	C	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:85:C:2:G:0:T:0:N:0:O:2	.	1,36,1,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.06451612903225806	.	A:6:C:0:G:85:T:0:N:0:O:2	.	6,23,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.041666666666666664	.	A:3:C:0:G:66:T:0:N:0:O:3	.	3,6,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29120	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:2:C:90:G:0:T:1:N:0:O:11	.	2,63,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29187	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:0:C:95:G:0:T:2:N:0:O:7	.	2,42,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29188	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:83:C:0:G:3:T:0:N:0:O:0	.	2,31,1,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29382	A	G	A	16	ignore low frequency variant	Pass	False	False	True	57	.	20	.	0.07017543859649122	.	A:53:C:0:G:4:T:0:N:0:O:0	.	0,0,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29391	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:80:C:0:G:3:T:0:N:0:O:0	.	3,8,0,75	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.043795620437956206	.	A:6:C:0:G:130:T:0:N:0:O:1	.	6,26,0,111	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	164	.	20	.	0.024390243902439025	.	A:4:C:0:G:135:T:0:N:0:O:25	.	4,49,0,115	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29711	G	T	G	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:24:T:1:N:0:O:4	.	0,12,1,17	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00133	artic-pipeline	NB08	MN908947.3	29749	A	G	A	1	near depth threshold	Alarm	False	False	True	20	.	20	.	0.05	.	A:19:C:0:G:1:T:0:N:0:O:0	.	1,9,0,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.07692307692307693	.	A:0:C:2:G:23:T:0:N:0:O:1	.	2,8,0,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29816	T	A	T	16	ignore low frequency variant	Pass	False	False	True	28	.	20	.	0.03571428571428571	.	A:1:C:0:G:0:T:27:N:0:O:0	.	0,13,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29818	A	T	A	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:28:C:0:G:0:T:1:N:0:O:0	.	0,13,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29820	T	C	T	1	near depth threshold	Alarm	False	False	True	23	.	20	.	0.043478260869565216	.	A:0:C:1:G:0:T:22:N:0:O:0	.	0,10,1,13	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	29821	T	C	T	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:0:C:1:G:0:T:20:N:0:O:0	.	0,12,1,9	.	.	.	depth near threshold	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00133	artic-pipeline	NB08	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	78	T	A	T	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:1:C:0:G:0:T:22:N:0:O:3	.	0,10,1,16	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	106	C	T	C	16	ignore low frequency variant	Pass	False	False	True	26	.	20	.	0.038461538461538464	.	A:0:C:25:G:0:T:1:N:0:O:0	.	0,11,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	143	A	C	A	16	ignore low frequency variant	Pass	False	False	True	24	.	20	.	0.041666666666666664	.	A:23:C:1:G:0:T:0:N:0:O:0	.	0,10,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	145	T	C	T	16	ignore low frequency variant	Pass	False	False	True	25	.	20	.	0.04	.	A:0:C:1:G:0:T:24:N:0:O:0	.	0,11,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	241	C	T	T	1	near depth threshold	Alarm	True	True	True	16	.	20	.	1.0	.	A:0:C:0:G:0:T:16:N:0:O:0	.	7,7,9,9	70.0	1277.8	.	depth near threshold	.	mismatch(n+m)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	252	G	A	G	1	near depth threshold	Alarm	False	False	True	21	.	20	.	0.047619047619047616	.	A:1:C:0:G:20:T:0:N:0:O:0	.	0,10,1,11	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	831	A	T	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:80:C:0:G:0:T:2:N:0:O:2	.	1,11,1,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	842	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.031578947368421054	.	A:0:C:92:G:0:T:3:N:0:O:0	.	0,55,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	956	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,61,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1059	C	T	T	17	accept high frequency variant	Pass	False	True	True	137	.	20	.	1.0	.	A:0:C:0:G:0:T:137:N:0:O:0	.	70,70,67,67	210.0	1329.8	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:69:T:0:N:0:O:17	.	1,2,1,86	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:86:C:0:G:2:T:0:N:0:O:1	.	1,37,1,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1386	A	T	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:127:C:0:G:0:T:3:N:0:O:0	.	3,53,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:126:G:3:T:0:N:0:O:1	.	3,54,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1626	T	C	T	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:2:G:0:T:76:N:0:O:3	.	0,56,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:83:G:0:T:0:N:0:O:28	.	0,56,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1633	A	G	A	16	ignore low frequency variant	Pass	False	False	True	46	.	20	.	0.021739130434782608	.	A:44:C:0:G:1:T:0:N:0:O:1	.	1,6,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1634	G	A	G	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:0:G:70:T:0:N:0:O:0	.	2,3,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.041237113402061855	.	A:0:C:4:G:0:T:89:N:0:O:4	.	0,54,4,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.03125	.	A:61:C:0:G:2:T:0:N:0:O:1	.	1,13,1,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	2143	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:92:G:0:T:2:N:0:O:1	.	0,55,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.06818181818181818	.	A:6:C:0:G:82:T:0:N:0:O:0	.	6,30,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	2303	A	T	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:105:C:0:G:0:T:3:N:0:O:4	.	1,74,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	2329	G	T	G	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:0:G:133:T:3:N:0:O:2	.	1,61,2,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	122	.	20	.	0.680327868852459	.	A:0:C:0:G:0:T:83:N:0:O:39	.	47,86,36,36	59.694	1497.9	.	.	.	.	mixed position	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:0:C:88:G:0:T:2:N:0:O:3	.	0,50,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	3417	A	T	A	16	ignore low frequency variant	Pass	False	False	True	34	.	20	.	0.029411764705882353	.	A:32:C:0:G:0:T:1:N:0:O:1	.	0,1,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	3418	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:75:T:0:N:0:O:1	.	1,6,1,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	3428	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:118:C:0:G:3:T:0:N:0:O:1	.	3,43,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	3473	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:3:C:0:G:104:T:0:N:0:O:2	.	2,43,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	3540	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:83:G:0:T:4:N:0:O:1	.	0,66,4,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:1:C:0:G:80:T:2:N:0:O:4	.	2,46,0,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.06756756756756757	.	A:5:C:0:G:68:T:0:N:0:O:1	.	1,47,4,27	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	4027	A	G	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:122:C:0:G:3:T:0:N:0:O:0	.	3,58,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	4105	G	A	G	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.023474178403755867	.	A:5:C:0:G:197:T:0:N:0:O:11	.	5,70,0,143	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	4304	A	T	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:92:C:0:G:0:T:2:N:0:O:1	.	0,46,2,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	4370	G	T	G	16	ignore low frequency variant	Pass	False	False	True	190	.	20	.	0.03684210526315789	.	A:0:C:0:G:174:T:7:N:0:O:9	.	0,141,7,49	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	4984	A	G	A	16	ignore low frequency variant	Pass	False	False	True	217	.	20	.	0.02304147465437788	.	A:212:C:0:G:5:T:0:N:0:O:0	.	5,78,0,139	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	5139	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:91:C:0:G:0:T:2:N:0:O:0	.	2,19,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	5140	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:98:G:0:T:2:N:0:O:1	.	2,27,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	5162	G	T	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:0:G:101:T:3:N:0:O:2	.	3,36,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	5579	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	1,52,1,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	68	.	20	.	0.10294117647058823	.	A:0:C:60:G:0:T:7:N:0:O:1	.	0,56,7,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	5792	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:87:T:0:N:0:O:2	.	2,17,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:86:G:0:T:2:N:0:O:1	.	0,70,2,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.043859649122807015	.	A:0:C:5:G:0:T:94:N:0:O:15	.	2,59,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6255	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:0:C:93:G:0:T:3:N:0:O:4	.	0,71,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6257	A	G	A	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:67:C:0:G:3:T:0:N:0:O:0	.	3,48,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6369	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:102:T:0:N:0:O:0	.	0,49,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6451	T	G	T	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:0:C:0:G:3:T:98:N:0:O:3	.	0,72,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:0:G:3:T:109:N:0:O:6	.	0,67,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6694	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:2:C:0:G:88:T:0:N:0:O:0	.	2,48,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6741	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:91:T:0:N:0:O:0	.	2,32,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	212	.	20	.	0.02830188679245283	.	A:205:C:0:G:6:T:1:N:0:O:0	.	6,95,0,117	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.0196078431372549	.	A:0:C:196:G:0:T:4:N:0:O:4	.	0,126,4,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	6839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	195	.	20	.	0.02564102564102564	.	A:5:C:0:G:186:T:0:N:0:O:4	.	4,91,1,104	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7032	A	T	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:83:C:0:G:0:T:4:N:0:O:3	.	0,64,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7274	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:1:C:0:G:2:T:95:N:0:O:0	.	1,28,1,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7390	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.13761467889908258	.	A:0:C:94:G:0:T:15:N:0:O:0	.	13,48,2,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:86:T:0:N:0:O:1	.	3,21,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	7692	A	G	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.025210084033613446	.	A:116:C:0:G:3:T:0:N:0:O:0	.	2,47,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7711	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:88:N:0:O:5	.	0,55,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:94:C:0:G:4:T:0:N:0:O:0	.	4,29,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7860	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:97:G:0:T:0:N:0:O:1	.	2,45,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7861	T	C	T	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.018018018018018018	.	A:0:C:2:G:0:T:91:N:0:O:18	.	1,66,1,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	7949	A	G	A	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:97:C:0:G:3:T:0:N:0:O:1	.	3,37,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	8549	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:97:T:0:N:0:O:1	.	2,38,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	8592	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:3:G:0:T:85:N:0:O:0	.	0,54,3,34	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	8628	A	T	A	16	ignore low frequency variant	Pass	False	False	True	214	.	20	.	0.02336448598130841	.	A:206:C:0:G:2:T:5:N:0:O:1	.	1,79,4,135	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	8889	G	A	G	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:72:T:0:N:0:O:2	.	2,5,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	8970	T	A	T	16	ignore low frequency variant	Pass	False	False	True	151	.	20	.	0.019867549668874173	.	A:3:C:0:G:0:T:141:N:0:O:7	.	3,65,0,86	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:0:T:121:N:0:O:8	.	3,52,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:3:C:0:G:125:T:1:N:0:O:0	.	3,41,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	9333	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:83:G:0:T:3:N:0:O:2	.	0,53,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	9343	A	G	A	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:83:C:0:G:2:T:0:N:0:O:1	.	2,36,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.05217391304347826	.	A:0:C:0:G:109:T:6:N:0:O:0	.	0,61,6,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	45	.	20	.	0.022222222222222223	.	A:0:C:1:G:0:T:43:N:0:O:1	.	1,43,0,2	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	9741	A	C	A	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:91:C:2:G:0:T:1:N:0:O:2	.	0,58,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10134	T	C	T	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.017045454545454544	.	A:0:C:3:G:0:T:144:N:0:O:29	.	0,77,3,99	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10305	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:97:C:0:G:0:T:5:N:0:O:0	.	5,49,0,53	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:4:C:0:G:78:T:1:N:0:O:0	.	4,22,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10316	A	T	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:98:C:0:G:0:T:3:N:0:O:1	.	0,67,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:108:C:0:G:4:T:0:N:0:O:0	.	4,40,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:97:G:0:T:2:N:0:O:1	.	0,65,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.035398230088495575	.	A:0:C:0:G:4:T:104:N:0:O:5	.	0,61,4,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.03773584905660377	.	A:4:C:90:G:0:T:1:N:0:O:11	.	4,50,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	11083	G	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	66	.	20	.	0.5606060606060606	.	A:0:C:0:G:0:T:37:N:0:O:29	.	15,44,22,22	28.741	792.4	.	.	.	.	mixed position	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	11179	G	T	G	16	ignore low frequency variant	Pass	False	False	True	186	.	20	.	0.026881720430107527	.	A:0:C:0:G:139:T:5:N:0:O:42	.	3,98,2,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	11180	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:0:G:4:T:96:N:0:O:0	.	2,42,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:107:C:0:G:0:T:3:N:0:O:3	.	3,50,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.045454545454545456	.	A:0:C:83:G:0:T:4:N:0:O:1	.	0,58,4,30	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:67:C:0:G:2:T:0:N:0:O:0	.	0,52,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	12132	C	T	C	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:78:G:0:T:2:N:0:O:25	.	0,79,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12295	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.029850746268656716	.	A:0:C:130:G:0:T:4:N:0:O:0	.	4,61,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12296	C	T	C	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.03731343283582089	.	A:0:C:124:G:0:T:5:N:0:O:5	.	5,61,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12334	A	C	A	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:110:C:3:G:0:T:0:N:0:O:0	.	3,58,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:91:T:0:N:0:O:2	.	3,25,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12554	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:94:T:1:N:0:O:1	.	0,40,2,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.075	.	A:0:C:72:G:0:T:6:N:0:O:2	.	0,62,6,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:125:C:0:G:4:T:0:N:0:O:3	.	4,64,0,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12847	T	C	T	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:0:C:3:G:0:T:120:N:0:O:2	.	1,69,2,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.031496062992125984	.	A:123:C:0:G:4:T:0:N:0:O:0	.	4,44,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:125:C:0:G:3:T:0:N:0:O:2	.	3,53,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	13005	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0196078431372549	.	A:0:C:98:G:0:T:2:N:0:O:2	.	0,71,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:0:C:73:G:0:T:3:N:0:O:2	.	0,70,3,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:0:G:100:T:0:N:0:O:10	.	4,43,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	13545	T	G	T	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:0:G:2:T:86:N:0:O:2	.	0,48,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:4:C:88:G:0:T:0:N:0:O:3	.	4,34,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	13708	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.01834862385321101	.	A:0:C:95:G:0:T:2:N:0:O:12	.	1,27,1,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	14054	T	G	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:0:C:0:G:3:T:114:N:0:O:5	.	0,69,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	14126	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:3:C:0:G:93:T:0:N:0:O:0	.	3,35,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	14134	C	T	T	14	new position at high frequency	Pass	False	True	True	126	.	20	.	0.9841269841269841	.	A:0:C:1:G:0:T:124:N:0:O:1	.	67,68,57,58	61.455	1175.1	.	.	.	.	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	14286	C	T	C	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.03488372093023256	.	A:0:C:80:G:0:T:3:N:0:O:3	.	0,68,3,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	91	.	20	.	0.989010989010989	.	A:0:C:0:G:0:T:90:N:0:O:1	.	47,48,43,43	333.703	1336.0	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	14567	C	T	C	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:91:G:0:T:2:N:0:O:1	.	0,52,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:95:G:0:T:4:N:0:O:1	.	0,64,4,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	14688	C	T	C	16	ignore low frequency variant	Pass	False	False	True	137	.	20	.	0.021897810218978103	.	A:0:C:127:G:0:T:3:N:0:O:7	.	2,70,1,67	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	14783	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:92:G:0:T:2:N:0:O:2	.	0,56,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.046296296296296294	.	A:0:C:5:G:0:T:102:N:0:O:1	.	0,63,5,45	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	15079	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.050505050505050504	.	A:5:C:0:G:94:T:0:N:0:O:0	.	5,34,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	15102	T	C	T	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:0:C:4:G:0:T:75:N:0:O:1	.	0,72,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	15391	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:100:G:0:T:4:N:0:O:0	.	0,65,4,39	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	15950	T	C	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.03225806451612903	.	A:1:C:2:G:0:T:45:N:0:O:14	.	0,36,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	15951	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:75:G:0:T:2:N:0:O:3	.	2,24,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.1	.	A:0:C:45:G:0:T:5:N:0:O:0	.	0,28,5,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:3:C:0:G:93:T:0:N:0:O:3	.	3,26,0,73	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:0:G:2:T:96:N:0:O:2	.	0,62,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	16882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:102:C:0:G:3:T:0:N:0:O:0	.	3,43,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.038461538461538464	.	A:74:C:3:G:0:T:0:N:0:O:1	.	3,45,0,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17048	A	G	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:1:T:0:N:0:O:0	.	0,8,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17199	A	G	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:73:C:0:G:2:T:0:N:0:O:2	.	2,10,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.036036036036036036	.	A:107:C:0:G:4:T:0:N:0:O:0	.	4,47,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:88:G:0:T:2:N:0:O:2	.	1,65,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:0:G:98:T:0:N:0:O:1	.	2,24,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17573	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:99:G:0:T:3:N:0:O:0	.	0,65,3,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17617	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:0:C:86:G:0:T:3:N:0:O:1	.	0,50,3,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.047619047619047616	.	A:0:C:59:G:0:T:3:N:0:O:1	.	0,41,3,22	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:82:C:0:G:0:T:2:N:0:O:7	.	0,40,2,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.10476190476190476	.	A:11:C:0:G:94:T:0:N:0:O:0	.	0,59,11,46	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17898	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:97:G:0:T:0:N:0:O:1	.	0,48,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	17900	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:83:G:0:T:2:N:0:O:2	.	0,70,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	148	.	20	.	0.02027027027027027	.	A:3:C:0:G:0:T:128:N:0:O:17	.	3,52,0,96	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	18326	C	T	C	16	ignore low frequency variant	Pass	False	False	True	159	.	20	.	0.031446540880503145	.	A:0:C:153:G:0:T:5:N:0:O:1	.	0,101,5,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	18369	T	G	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.0423728813559322	.	A:0:C:0:G:5:T:113:N:0:O:0	.	4,46,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:2:T:0:N:0:O:0	.	2,36,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	18733	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.036585365853658534	.	A:3:C:0:G:78:T:0:N:0:O:1	.	3,30,0,52	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	18795	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.06015037593984962	.	A:1:C:121:G:0:T:8:N:0:O:3	.	3,67,5,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	19340	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	2,25,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	19397	A	G	A	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:95:C:0:G:2:T:0:N:0:O:2	.	2,39,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.08450704225352113	.	A:0:C:65:G:0:T:6:N:0:O:0	.	0,57,6,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	19487	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:94:N:0:O:0	.	0,57,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	19724	T	C	T	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.023076923076923078	.	A:0:C:3:G:0:T:127:N:0:O:0	.	0,72,3,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	20032	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.0392156862745098	.	A:0:C:98:G:0:T:4:N:0:O:0	.	1,52,3,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21019	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:95:T:0:N:0:O:0	.	2,33,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21081	A	G	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:71:C:0:G:2:T:0:N:0:O:0	.	0,7,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21082	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:82:T:0:N:0:O:2	.	0,13,2,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.03773584905660377	.	A:0:C:0:G:2:T:51:N:0:O:0	.	2,9,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.05555555555555555	.	A:0:C:0:G:79:T:5:N:0:O:6	.	0,64,5,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21324	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:96:N:0:O:0	.	0,58,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:2:C:0:G:80:T:0:N:0:O:4	.	2,16,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21654	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.02912621359223301	.	A:0:C:98:G:0:T:3:N:0:O:2	.	0,70,3,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:0:C:71:G:0:T:5:N:0:O:4	.	3,21,2,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	130	.	20	.	0.038461538461538464	.	A:5:C:0:G:115:T:0:N:0:O:10	.	5,57,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	21880	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:92:N:0:O:1	.	1,47,1,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22166	A	T	A	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.0213903743315508	.	A:183:C:0:G:0:T:4:N:0:O:0	.	3,90,1,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22219	T	G	T	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.034722222222222224	.	A:0:C:0:G:5:T:139:N:0:O:0	.	4,46,1,98	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22251	C	T	C	16	ignore low frequency variant	Pass	False	False	True	143	.	20	.	0.027972027972027972	.	A:0:C:135:G:0:T:4:N:0:O:4	.	1,83,3,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22312	T	C	T	16	ignore low frequency variant	Pass	False	False	True	213	.	20	.	0.018779342723004695	.	A:0:C:4:G:0:T:194:N:0:O:15	.	0,152,4,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22446	C	T	C	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:49:G:0:T:1:N:0:O:0	.	0,35,1,15	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22457	A	C	A	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:79:C:2:G:0:T:0:N:0:O:1	.	0,42,2,40	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22458	C	A	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:87:G:0:T:0:N:0:O:4	.	0,49,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22521	T	G	T	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.04838709677419355	.	A:0:C:0:G:3:T:58:N:0:O:1	.	3,22,0,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22620	G	T	G	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.024509803921568627	.	A:0:C:0:G:198:T:5:N:0:O:1	.	0,130,5,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	22988	G	C	G	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:1:C:3:G:142:T:0:N:0:O:0	.	3,64,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:0:C:2:G:0:T:98:N:0:O:0	.	0,68,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	23317	T	G	T	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:0:C:0:G:3:T:128:N:0:O:4	.	0,76,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	136	.	20	.	0.9191176470588235	.	A:0:C:0:G:125:T:0:N:0:O:11	.	60,71,65,65	264.613	1635.8	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	23506	C	T	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:0:C:108:G:0:T:3:N:0:O:1	.	0,61,3,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	23772	A	G	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:113:C:0:G:3:T:0:N:0:O:2	.	3,45,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:89:C:0:G:4:T:0:N:0:O:0	.	4,22,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:97:G:0:T:4:N:0:O:0	.	0,82,4,19	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0410958904109589	.	A:3:C:0:G:0:T:69:N:0:O:1	.	3,19,0,54	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.04395604395604396	.	A:4:C:0:G:86:T:0:N:0:O:1	.	4,17,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24057	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:92:T:0:N:0:O:2	.	2,22,0,74	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24096	C	T	C	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.03409090909090909	.	A:0:C:85:G:0:T:3:N:0:O:0	.	0,71,3,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:82:T:0:N:0:O:1	.	2,20,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24466	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:3:C:109:G:0:T:0:N:0:O:2	.	3,69,0,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24468	A	T	A	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:129:C:0:G:0:T:3:N:0:O:2	.	3,96,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	154	.	20	.	0.025974025974025976	.	A:0:C:4:G:0:T:149:N:0:O:1	.	0,97,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24673	A	C	A	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:74:C:2:G:0:T:0:N:0:O:0	.	2,48,0,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24926	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.04878048780487805	.	A:4:C:0:G:76:T:1:N:0:O:1	.	0,56,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24927	T	G	T	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.04819277108433735	.	A:1:C:0:G:4:T:78:N:0:O:0	.	0,55,4,28	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	40	.	20	.	0.025	.	A:0:C:1:G:0:T:37:N:0:O:2	.	1,27,0,13	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	25053	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:115:N:0:O:0	.	0,71,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25216	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,58,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25363	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.018691588785046728	.	A:97:C:0:G:2:T:0:N:0:O:8	.	2,32,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25421	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.039603960396039604	.	A:0:C:0:G:4:T:97:N:0:O:0	.	4,34,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25497	A	G	A	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:103:C:0:G:3:T:0:N:0:O:1	.	3,41,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:74:G:0:T:2:N:0:O:5	.	0,69,2,12	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	25550	T	G	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.01904761904761905	.	A:0:C:0:G:2:T:98:N:0:O:5	.	0,69,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25551	T	G	T	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.04	.	A:0:C:0:G:4:T:90:N:0:O:6	.	0,58,4,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25553	C	T	C	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:0:C:65:G:0:T:3:N:0:O:3	.	0,25,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:0:G:3:T:97:N:0:O:2	.	3,48,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	130	.	20	.	1.0	.	A:0:C:0:G:0:T:130:N:0:O:0	.	56,56,74,74	350.0	1939.5	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.04807692307692308	.	A:5:C:89:G:0:T:0:N:0:O:10	.	5,58,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25740	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:115:T:0:N:0:O:5	.	3,53,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25797	C	A	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.03508771929824561	.	A:4:C:73:G:0:T:0:N:0:O:37	.	2,36,2,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	53	.	20	.	0.11320754716981132	.	A:46:C:6:G:0:T:0:N:0:O:1	.	0,30,6,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25805	C	T	C	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.030303030303030304	.	A:0:C:95:G:0:T:3:N:0:O:1	.	0,52,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25882	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:84:C:0:G:2:T:0:N:0:O:1	.	2,23,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	25905	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:93:C:1:G:3:T:0:N:0:O:1	.	3,36,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26373	C	T	C	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:0:C:89:G:0:T:4:N:0:O:0	.	0,59,4,34	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26494	T	G	T	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:0:G:2:T:79:N:0:O:1	.	2,28,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.037037037037037035	.	A:0:C:78:G:0:T:3:N:0:O:0	.	0,52,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26525	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:2:C:0:G:90:T:0:N:0:O:1	.	2,41,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26608	T	A	T	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:0:T:93:N:0:O:2	.	2,49,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26703	A	G	A	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:141:C:0:G:3:T:0:N:0:O:1	.	3,68,0,77	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.03389830508474576	.	A:109:C:0:G:0:T:4:N:0:O:5	.	4,27,0,91	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.047619047619047616	.	A:5:C:0:G:100:T:0:N:0:O:0	.	5,13,0,92	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26713	G	T	G	16	ignore low frequency variant	Pass	False	False	True	235	.	20	.	0.02127659574468085	.	A:0:C:0:G:195:T:5:N:0:O:35	.	5,140,0,95	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	26714	T	G	T	16	ignore low frequency variant	Pass	False	False	True	166	.	20	.	0.030120481927710843	.	A:0:C:0:G:5:T:161:N:0:O:0	.	5,78,0,88	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26754	G	A	G	16	ignore low frequency variant	Pass	False	False	True	158	.	20	.	0.02531645569620253	.	A:4:C:0:G:151:T:0:N:0:O:3	.	4,76,0,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26877	C	T	C	16	ignore low frequency variant	Pass	False	False	True	204	.	20	.	0.0196078431372549	.	A:0:C:196:G:0:T:4:N:0:O:4	.	0,196,4,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	26911	C	T	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:0:C:72:G:0:T:2:N:0:O:1	.	2,14,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	27068	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:96:C:0:G:2:T:0:N:0:O:6	.	2,40,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	27084	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.05	.	A:4:C:0:G:75:T:0:N:0:O:1	.	4,21,0,59	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.08433734939759036	.	A:0:C:75:G:0:T:7:N:0:O:1	.	0,59,7,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	27106	C	G	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:86:G:2:T:1:N:0:O:1	.	0,68,2,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	27384	T	C	C	17	accept high frequency variant	Pass	False	True	True	139	.	20	.	0.9928057553956835	.	A:0:C:138:G:0:T:1:N:0:O:0	.	73,73,65,66	420.0	1576.3	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	27620	A	G	A	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.031914893617021274	.	A:89:C:0:G:3:T:0:N:0:O:2	.	2,29,1,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28215	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:72:N:0:O:0	.	2,45,0,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28221	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:90:T:0:N:0:O:4	.	2,33,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28292	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:79:G:0:T:2:N:0:O:9	.	0,65,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28313	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:0:C:84:G:0:T:2:N:0:O:1	.	0,58,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28400	C	A	C	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:3:C:94:G:0:T:0:N:0:O:13	.	3,71,0,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.04285714285714286	.	A:0:C:59:G:0:T:3:N:0:O:8	.	0,27,3,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:89:T:0:N:0:O:0	.	4,22,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:85:G:0:T:2:N:0:O:5	.	0,61,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	29055	A	C	A	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:49:C:1:G:0:T:0:N:0:O:0	.	1,12,0,38	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	29271	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:98:C:2:G:0:T:0:N:0:O:0	.	0,57,2,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.03333333333333333	.	A:3:C:0:G:84:T:0:N:0:O:3	.	2,12,1,78	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	29426	A	G	A	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:97:C:0:G:2:T:0:N:0:O:4	.	2,24,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:91:T:0:N:0:O:14	.	3,26,0,82	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	29578	C	T	C	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.02127659574468085	.	A:0:C:136:G:0:T:3:N:0:O:2	.	3,80,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00135	artic-pipeline	NB10	MN908947.3	16255	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	16256	T	N	N	20	ambiguous base due to indel	Pass	.	False	False	150	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00135	artic-pipeline	NB10	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	146	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	148	T	C	T	1	near depth threshold	Alarm	False	False	True	22	.	20	.	0.045454545454545456	.	A:0:C:1:G:0:T:19:N:0:O:2	.	0,10,1,12	.	.	.	depth near threshold	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	241	C	T	T	17	accept high frequency variant	Pass	True	True	True	27	.	20	.	0.8888888888888888	.	A:0:C:0:G:0:T:24:N:0:O:3	.	4,7,20,20	69.237	1298.9	.	.	.	.	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	267	T	G	T	16	ignore low frequency variant	Pass	False	False	True	29	.	20	.	0.034482758620689655	.	A:0:C:0:G:1:T:26:N:0:O:2	.	0,8,1,21	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	454	A	G	A	16	ignore low frequency variant	Pass	False	False	True	141	.	20	.	0.028368794326241134	.	A:134:C:0:G:4:T:0:N:0:O:3	.	4,31,0,110	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	657	C	T	C	16	ignore low frequency variant	Pass	False	False	True	182	.	20	.	0.027472527472527472	.	A:0:C:177:G:0:T:5:N:0:O:0	.	0,87,5,95	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1006	G	A	G	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:0:G:76:T:0:N:0:O:0	.	2,10,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1077	C	A	C	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.030303030303030304	.	A:4:C:125:G:0:T:0:N:0:O:3	.	4,61,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1080	A	T	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:121:C:0:G:0:T:3:N:0:O:5	.	3,64,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1135	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:4:C:0:G:79:T:0:N:0:O:29	.	1,12,3,100	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1136	A	G	A	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:82:C:0:G:2:T:0:N:0:O:0	.	0,38,2,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1222	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:91:N:0:O:2	.	0,69,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1387	C	G	C	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.03125	.	A:0:C:123:G:4:T:0:N:0:O:1	.	4,57,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1593	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:77:G:0:T:2:N:0:O:2	.	2,15,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1628	C	A	C	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:3:C:88:G:0:T:0:N:0:O:22	.	0,65,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1778	T	C	T	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.05714285714285714	.	A:0:C:6:G:0:T:93:N:0:O:6	.	0,55,6,50	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1804	A	G	A	16	ignore low frequency variant	Pass	False	False	True	64	.	20	.	0.046875	.	A:59:C:0:G:3:T:0:N:0:O:2	.	0,10,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1805	G	A	G	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:2:C:0:G:85:T:0:N:0:O:1	.	0,23,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1806	G	A	G	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.03571428571428571	.	A:5:C:0:G:121:T:0:N:0:O:14	.	2,62,3,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1828	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:90:T:0:N:0:O:0	.	0,66,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2095	G	A	G	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:1:G:92:T:0:N:0:O:0	.	2,42,0,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2198	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.10638297872340426	.	A:10:C:0:G:81:T:1:N:0:O:2	.	10,30,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	2318	T	A	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:2:C:0:G:0:T:93:N:0:O:0	.	2,47,0,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2416	C	T	T	17	accept high frequency variant	Pass	False	True	True	146	.	20	.	1.0	.	A:0:C:0:G:0:T:146:N:0:O:0	.	74,74,72,72	203.216	1487.8	.	.	.	.	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	2473	A	C	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:3:G:0:T:0:N:0:O:1	.	3,50,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2711	A	C	A	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:121:C:4:G:0:T:0:N:0:O:0	.	4,67,0,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2810	A	G	A	16	ignore low frequency variant	Pass	False	False	True	124	.	20	.	0.03225806451612903	.	A:118:C:0:G:4:T:0:N:0:O:2	.	4,57,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2836	C	T	C	16	ignore low frequency variant	Pass	False	False	True	81	.	20	.	0.024691358024691357	.	A:0:C:77:G:0:T:2:N:0:O:2	.	0,64,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2893	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:94:C:0:G:2:T:0:N:0:O:2	.	2,32,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2909	A	C	A	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.03896103896103896	.	A:74:C:3:G:0:T:0:N:0:O:0	.	1,32,2,45	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	2910	C	T	C	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.017543859649122806	.	A:0:C:98:G:0:T:2:N:0:O:14	.	1,51,1,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	3037	C	T	T	11	mixed fequency due to deletions in homopolymer	Pass	True	True	True	126	.	20	.	0.6587301587301587	.	A:0:C:0:G:0:T:83:N:0:O:43	.	48,91,35,35	54.765	1438.3	.	.	.	.	mixed position	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	3145	G	T	G	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.044444444444444446	.	A:0:C:0:G:78:T:4:N:0:O:8	.	0,57,4,33	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	3365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:1:C:88:G:0:T:2:N:0:O:1	.	0,54,2,38	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	3410	G	A	G	16	ignore low frequency variant	Pass	False	False	True	69	.	20	.	0.028985507246376812	.	A:2:C:0:G:66:T:0:N:0:O:1	.	2,27,0,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	3411	C	T	C	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.07228915662650602	.	A:0:C:76:G:0:T:6:N:0:O:1	.	0,40,6,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	3837	T	G	T	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:0:C:0:G:5:T:72:N:0:O:16	.	1,49,4,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	3838	G	T	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:1:C:0:G:83:T:2:N:0:O:7	.	1,50,1,43	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	3839	G	A	G	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.08139534883720931	.	A:7:C:0:G:77:T:0:N:0:O:2	.	0,50,7,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	3981	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:0:C:3:G:1:T:97:N:0:O:0	.	0,60,3,41	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	4239	A	C	A	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:108:C:3:G:0:T:0:N:0:O:0	.	3,31,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	4485	A	T	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.030927835051546393	.	A:92:C:0:G:0:T:3:N:0:O:2	.	0,50,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	4950	T	G	T	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:0:C:0:G:3:T:127:N:0:O:16	.	0,78,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5114	A	G	A	16	ignore low frequency variant	Pass	False	False	True	129	.	20	.	0.023255813953488372	.	A:125:C:0:G:3:T:0:N:0:O:1	.	3,64,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5225	A	C	A	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.04225352112676056	.	A:67:C:3:G:0:T:0:N:0:O:1	.	0,39,3,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5300	G	A	G	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.027777777777777776	.	A:3:C:0:G:104:T:0:N:0:O:1	.	3,47,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5662	A	G	A	16	ignore low frequency variant	Pass	False	False	True	127	.	20	.	0.023622047244094488	.	A:123:C:0:G:3:T:0:N:0:O:1	.	3,58,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5716	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:107:T:0:N:0:O:1	.	2,65,1,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5730	C	T	C	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.029411764705882353	.	A:0:C:97:G:0:T:3:N:0:O:2	.	0,60,3,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5736	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.1111111111111111	.	A:0:C:64:G:0:T:8:N:0:O:0	.	0,62,8,10	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5784	C	A	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:2:C:63:G:0:T:0:N:0:O:7	.	0,28,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5785	T	C	T	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:0:C:2:G:0:T:72:N:0:O:0	.	0,44,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5786	T	C	T	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.056818181818181816	.	A:0:C:5:G:0:T:83:N:0:O:0	.	0,52,5,36	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	5979	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:83:G:0:T:2:N:0:O:5	.	0,73,2,17	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	6078	C	T	C	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.08045977011494253	.	A:0:C:79:G:0:T:7:N:0:O:1	.	0,63,7,24	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	6144	T	C	T	16	ignore low frequency variant	Pass	False	False	True	107	.	20	.	0.028037383177570093	.	A:0:C:3:G:0:T:96:N:0:O:8	.	0,43,3,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	6148	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:1:T:87:N:0:O:6	.	0,70,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	6388	C	T	C	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:113:G:0:T:3:N:0:O:2	.	0,64,3,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	6427	T	C	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:1:C:2:G:0:T:88:N:0:O:10	.	1,40,1,61	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	6606	C	T	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:135:G:0:T:3:N:0:O:0	.	1,73,2,65	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	6666	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:0:C:70:G:0:T:2:N:0:O:0	.	1,41,1,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	6668	T	G	T	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:0:C:0:G:3:T:102:N:0:O:5	.	0,54,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	6785	A	G	A	16	ignore low frequency variant	Pass	False	False	True	208	.	20	.	0.028846153846153848	.	A:192:C:0:G:6:T:1:N:0:O:9	.	6,85,0,123	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	7472	G	A	G	16	ignore low frequency variant	Pass	False	False	True	105	.	20	.	0.02857142857142857	.	A:3:C:0:G:99:T:0:N:0:O:3	.	3,35,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	7515	G	A	G	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.028846153846153848	.	A:3:C:0:G:99:T:0:N:0:O:2	.	3,30,0,74	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	7517	G	A	G	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:2:C:0:G:92:T:0:N:0:O:3	.	2,27,0,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	7594	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.038461538461538464	.	A:0:C:82:G:0:T:4:N:0:O:18	.	0,84,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	7794	A	C	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.044642857142857144	.	A:107:C:5:G:0:T:0:N:0:O:0	.	5,47,0,65	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	7833	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.042105263157894736	.	A:91:C:0:G:4:T:0:N:0:O:0	.	4,31,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	8089	A	C	A	16	ignore low frequency variant	Pass	False	False	True	140	.	20	.	0.02857142857142857	.	A:132:C:4:G:0:T:0:N:0:O:4	.	0,80,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	8259	T	C	T	16	ignore low frequency variant	Pass	False	False	True	139	.	20	.	0.02877697841726619	.	A:0:C:4:G:0:T:135:N:0:O:0	.	0,79,4,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9027	T	A	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:2:C:0:G:0:T:95:N:0:O:1	.	2,52,0,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9031	T	A	T	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.06557377049180328	.	A:8:C:0:G:0:T:108:N:0:O:6	.	7,62,1,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9140	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.02962962962962963	.	A:4:C:0:G:130:T:0:N:0:O:1	.	4,57,0,78	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9388	G	T	G	16	ignore low frequency variant	Pass	False	False	True	134	.	20	.	0.022388059701492536	.	A:0:C:0:G:130:T:3:N:0:O:1	.	0,71,3,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9627	C	T	C	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:71:G:0:T:2:N:0:O:22	.	2,91,0,4	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9628	T	C	T	16	ignore low frequency variant	Pass	False	False	True	50	.	20	.	0.02	.	A:0:C:1:G:0:T:49:N:0:O:0	.	1,49,0,1	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9881	A	G	A	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:123:C:0:G:3:T:0:N:0:O:0	.	3,53,0,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9882	G	A	G	16	ignore low frequency variant	Pass	False	False	True	132	.	20	.	0.022727272727272728	.	A:3:C:0:G:129:T:0:N:0:O:0	.	3,53,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	9893	C	T	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:89:G:0:T:2:N:0:O:10	.	0,70,2,31	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10308	G	A	G	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.0625	.	A:5:C:0:G:75:T:0:N:0:O:0	.	5,20,0,60	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10490	G	A	G	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:2:C:0:G:77:T:0:N:0:O:3	.	1,24,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10593	A	G	A	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.07407407407407407	.	A:99:C:0:G:8:T:0:N:0:O:1	.	8,40,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10732	T	C	T	16	ignore low frequency variant	Pass	False	False	True	221	.	20	.	0.02262443438914027	.	A:0:C:5:G:0:T:216:N:0:O:0	.	0,137,5,84	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10777	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:84:N:0:O:6	.	0,63,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10834	C	T	C	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:0:C:88:G:0:T:2:N:0:O:0	.	0,65,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10936	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.04950495049504951	.	A:0:C:0:G:5:T:95:N:0:O:1	.	0,57,5,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	10970	C	A	C	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:3:C:101:G:0:T:0:N:0:O:8	.	3,60,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11096	T	C	T	16	ignore low frequency variant	Pass	False	False	True	47	.	20	.	0.02127659574468085	.	A:0:C:1:G:0:T:46:N:0:O:0	.	0,42,1,5	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11184	T	G	T	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:0:G:2:T:98:N:0:O:1	.	0,40,2,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11267	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	1,66,1,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11496	A	T	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:0:T:3:N:0:O:0	.	3,55,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11669	C	T	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.13	.	A:0:C:86:G:0:T:13:N:0:O:1	.	0,65,13,35	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11749	A	T	A	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.027522935779816515	.	A:106:C:0:G:0:T:3:N:0:O:0	.	3,49,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11990	G	T	G	16	ignore low frequency variant	Pass	False	False	True	187	.	20	.	0.026737967914438502	.	A:0:C:0:G:122:T:5:N:0:O:60	.	1,86,4,101	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.06060606060606061	.	A:62:C:0:G:4:T:0:N:0:O:0	.	1,46,3,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	11995	A	T	A	16	ignore low frequency variant	Pass	False	False	True	74	.	20	.	0.02702702702702703	.	A:72:C:0:G:0:T:2:N:0:O:0	.	0,48,2,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	11996	A	T	A	16	ignore low frequency variant	Pass	False	False	True	73	.	20	.	0.0273972602739726	.	A:70:C:0:G:1:T:2:N:0:O:0	.	1,49,1,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12086	T	C	T	16	ignore low frequency variant	Pass	False	False	True	86	.	20	.	0.023255813953488372	.	A:0:C:2:G:0:T:84:N:0:O:0	.	1,58,1,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12259	A	G	A	16	ignore low frequency variant	Pass	False	False	True	117	.	20	.	0.02564102564102564	.	A:114:C:0:G:3:T:0:N:0:O:0	.	3,50,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12423	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.053763440860215055	.	A:5:C:0:G:86:T:0:N:0:O:2	.	5,25,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12695	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.07317073170731707	.	A:0:C:75:G:0:T:6:N:0:O:1	.	0,64,6,18	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12749	G	T	G	16	ignore low frequency variant	Pass	False	False	True	230	.	20	.	0.030434782608695653	.	A:1:C:0:G:222:T:7:N:0:O:0	.	7,104,0,126	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12964	A	G	A	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.02608695652173913	.	A:106:C:0:G:3:T:0:N:0:O:6	.	3,44,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12982	A	G	A	16	ignore low frequency variant	Pass	False	False	True	88	.	20	.	0.022727272727272728	.	A:85:C:0:G:2:T:0:N:0:O:1	.	2,20,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	12991	A	G	A	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.025	.	A:117:C:0:G:3:T:0:N:0:O:0	.	3,49,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13025	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:84:T:0:N:0:O:3	.	2,28,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13282	T	A	T	16	ignore low frequency variant	Pass	False	False	True	184	.	20	.	0.021739130434782608	.	A:4:C:0:G:0:T:161:N:0:O:19	.	4,103,0,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13288	A	G	A	16	ignore low frequency variant	Pass	False	False	True	167	.	20	.	0.017964071856287425	.	A:144:C:0:G:3:T:0:N:0:O:20	.	3,70,0,97	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13476	C	T	C	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.05952380952380952	.	A:0:C:77:G:0:T:5:N:0:O:2	.	0,71,5,13	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13489	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.045454545454545456	.	A:5:C:0:G:99:T:0:N:0:O:6	.	5,39,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13491	C	A	C	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:2:C:98:G:0:T:0:N:0:O:1	.	2,57,0,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13492	C	A	C	16	ignore low frequency variant	Pass	False	False	True	75	.	20	.	0.02666666666666667	.	A:2:C:73:G:0:T:0:N:0:O:0	.	2,53,0,22	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13541	C	G	C	16	ignore low frequency variant	Pass	False	False	True	138	.	20	.	0.021739130434782608	.	A:0:C:113:G:3:T:1:N:0:O:21	.	1,68,2,70	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13542	T	C	T	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:0:C:2:G:0:T:87:N:0:O:0	.	0,54,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13609	C	A	C	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:96:G:0:T:0:N:0:O:2	.	2,39,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13612	G	A	G	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.01818181818181818	.	A:2:C:0:G:95:T:0:N:0:O:13	.	2,30,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	13919	A	G	A	16	ignore low frequency variant	Pass	False	False	True	62	.	20	.	0.06451612903225806	.	A:55:C:0:G:4:T:0:N:0:O:3	.	0,5,4,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	14408	C	T	T	17	accept high frequency variant	Pass	False	True	True	90	.	20	.	0.9777777777777777	.	A:0:C:1:G:0:T:88:N:0:O:1	.	47,49,41,41	408.931	1276.5	.	.	.	.	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	14479	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:93:G:0:T:3:N:0:O:0	.	0,67,3,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	14605	C	T	C	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:0:C:92:G:0:T:4:N:0:O:2	.	0,58,4,40	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	14933	T	C	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.02040816326530612	.	A:0:C:2:G:0:T:95:N:0:O:1	.	0,61,2,37	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	15130	A	G	A	16	ignore low frequency variant	Pass	False	False	True	110	.	20	.	0.02727272727272727	.	A:106:C:1:G:3:T:0:N:0:O:0	.	2,42,1,68	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	15423	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	0,49,2,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	15425	T	C	T	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:0:C:3:G:0:T:110:N:0:O:1	.	0,68,3,46	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	15952	C	T	C	16	ignore low frequency variant	Pass	False	False	True	49	.	20	.	0.08163265306122448	.	A:0:C:45:G:0:T:4:N:0:O:0	.	0,23,4,26	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	16111	C	T	C	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.03669724770642202	.	A:0:C:103:G:0:T:4:N:0:O:2	.	0,64,4,45	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	16140	A	G	A	16	ignore low frequency variant	Pass	False	False	True	97	.	20	.	0.020618556701030927	.	A:95:C:0:G:2:T:0:N:0:O:0	.	2,47,0,50	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	16260	C	T	C	16	ignore low frequency variant	Pass	False	False	True	108	.	20	.	0.037037037037037035	.	A:0:C:102:G:0:T:4:N:0:O:2	.	0,67,4,41	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	16266	A	T	A	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:90:C:0:G:0:T:2:N:0:O:0	.	2,41,0,51	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	16508	G	T	G	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.03968253968253968	.	A:0:C:0:G:115:T:5:N:0:O:6	.	5,66,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	16655	C	T	C	16	ignore low frequency variant	Pass	False	False	True	126	.	20	.	0.023809523809523808	.	A:0:C:122:G:0:T:3:N:0:O:1	.	0,73,3,53	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	16720	G	A	G	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:2:C:0:G:94:T:0:N:0:O:4	.	2,28,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	16836	T	G	T	16	ignore low frequency variant	Pass	False	False	True	115	.	20	.	0.034782608695652174	.	A:0:C:0:G:4:T:109:N:0:O:2	.	0,68,4,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	16837	G	A	G	16	ignore low frequency variant	Pass	False	False	True	172	.	20	.	0.023255813953488372	.	A:4:C:0:G:124:T:1:N:0:O:43	.	0,91,4,81	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	16946	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:94:G:0:T:2:N:0:O:0	.	0,57,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17045	A	C	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.03	.	A:97:C:3:G:0:T:0:N:0:O:0	.	3,45,0,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17121	A	G	A	16	ignore low frequency variant	Pass	False	False	True	205	.	20	.	0.02926829268292683	.	A:197:C:0:G:6:T:1:N:0:O:1	.	6,68,0,137	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17132	A	G	A	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.024096385542168676	.	A:79:C:0:G:2:T:0:N:0:O:2	.	1,56,1,27	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17196	G	A	G	16	ignore low frequency variant	Pass	False	False	True	71	.	20	.	0.028169014084507043	.	A:2:C:0:G:68:T:0:N:0:O:1	.	2,10,0,61	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17227	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.03571428571428571	.	A:108:C:0:G:4:T:0:N:0:O:0	.	4,47,0,65	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17280	G	T	G	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.032	.	A:0:C:0:G:121:T:4:N:0:O:0	.	4,59,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17470	C	T	C	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.043478260869565216	.	A:0:C:87:G:0:T:4:N:0:O:1	.	0,69,4,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	17567	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.0625	.	A:7:C:0:G:104:T:0:N:0:O:1	.	7,44,0,68	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17845	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.06578947368421052	.	A:0:C:71:G:0:T:5:N:0:O:0	.	0,51,5,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17846	A	T	A	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.032520325203252036	.	A:102:C:0:G:0:T:4:N:0:O:17	.	0,48,4,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17847	G	A	G	16	ignore low frequency variant	Pass	False	False	True	109	.	20	.	0.10091743119266056	.	A:11:C:0:G:98:T:0:N:0:O:0	.	0,66,11,43	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17944	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.03296703296703297	.	A:3:C:0:G:88:T:0:N:0:O:0	.	3,31,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17946	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:85:C:0:G:2:T:0:N:0:O:3	.	2,26,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	17947	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:75:T:0:N:0:O:0	.	2,19,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18219	T	A	T	16	ignore low frequency variant	Pass	False	False	True	175	.	20	.	0.022857142857142857	.	A:4:C:0:G:0:T:144:N:0:O:27	.	3,57,1,118	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18515	G	T	G	16	ignore low frequency variant	Pass	False	False	True	176	.	20	.	0.022727272727272728	.	A:0:C:0:G:168:T:4:N:0:O:4	.	0,110,4,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18634	G	T	G	16	ignore low frequency variant	Pass	False	False	True	248	.	20	.	0.028225806451612902	.	A:0:C:0:G:241:T:7:N:0:O:0	.	0,175,7,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18702	A	G	A	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.034482758620689655	.	A:83:C:0:G:3:T:1:N:0:O:0	.	3,33,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18703	G	A	G	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:3:C:0:G:94:T:0:N:0:O:1	.	3,35,0,63	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18735	A	T	A	16	ignore low frequency variant	Pass	False	False	True	36	.	20	.	0.027777777777777776	.	A:35:C:0:G:0:T:1:N:0:O:0	.	0,16,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:0:C:2:G:0:T:93:N:0:O:1	.	0,60,2,36	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	18978	A	G	A	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.03067484662576687	.	A:157:C:0:G:5:T:0:N:0:O:1	.	4,60,1,103	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	19132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:132:T:0:N:0:O:0	.	3,27,0,108	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	19467	T	C	T	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.03361344537815126	.	A:0:C:4:G:0:T:115:N:0:O:0	.	0,70,4,49	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	19484	C	T	C	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.08333333333333333	.	A:0:C:65:G:0:T:6:N:0:O:1	.	0,58,6,14	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	19595	T	C	T	16	ignore low frequency variant	Pass	False	False	True	118	.	20	.	0.025423728813559324	.	A:0:C:3:G:0:T:113:N:0:O:2	.	0,71,3,47	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	19635	G	A	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.0297029702970297	.	A:3:C:0:G:98:T:0:N:0:O:0	.	3,42,0,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	19755	T	A	T	16	ignore low frequency variant	Pass	False	False	True	191	.	20	.	0.015706806282722512	.	A:3:C:0:G:0:T:144:N:0:O:44	.	0,80,3,111	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	19797	T	C	T	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:2:G:0:T:96:N:0:O:5	.	0,64,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	19980	T	C	T	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:0:C:2:G:0:T:90:N:0:O:0	.	0,57,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	20029	G	A	G	16	ignore low frequency variant	Pass	False	False	True	121	.	20	.	0.03305785123966942	.	A:4:C:0:G:115:T:0:N:0:O:2	.	4,50,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	20181	A	G	A	16	ignore low frequency variant	Pass	False	False	True	102	.	20	.	0.049019607843137254	.	A:97:C:0:G:5:T:0:N:0:O:0	.	5,40,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	20252	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.05263157894736842	.	A:0:C:0:G:5:T:90:N:0:O:0	.	5,37,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	20278	G	A	G	16	ignore low frequency variant	Pass	False	False	True	120	.	20	.	0.03333333333333333	.	A:4:C:0:G:114:T:0:N:0:O:2	.	2,54,2,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	20480	C	T	C	16	ignore low frequency variant	Pass	False	False	True	133	.	20	.	0.022556390977443608	.	A:0:C:130:G:0:T:3:N:0:O:0	.	0,65,3,68	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	20889	A	G	A	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:89:C:0:G:2:T:0:N:0:O:4	.	2,29,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21102	T	G	T	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.05172413793103448	.	A:0:C:1:G:3:T:54:N:0:O:0	.	3,14,0,44	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21148	G	T	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.0989010989010989	.	A:0:C:0:G:73:T:9:N:0:O:9	.	0,66,9,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21186	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:93:T:0:N:0:O:1	.	0,71,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21191	C	T	C	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:0:C:102:G:0:T:3:N:0:O:1	.	0,58,3,48	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21218	T	C	T	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.02127659574468085	.	A:0:C:2:G:0:T:85:N:0:O:7	.	0,64,2,30	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21220	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:83:T:0:N:0:O:0	.	2,33,0,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21363	T	A	T	16	ignore low frequency variant	Pass	False	False	True	63	.	20	.	0.031746031746031744	.	A:2:C:0:G:0:T:42:N:0:O:19	.	1,49,1,14	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21365	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:1:C:89:G:0:T:2:N:0:O:4	.	0,67,2,29	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21447	A	G	A	16	ignore low frequency variant	Pass	False	False	True	72	.	20	.	0.027777777777777776	.	A:69:C:0:G:2:T:0:N:0:O:1	.	2,8,0,64	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21448	G	A	G	16	ignore low frequency variant	Pass	False	False	True	83	.	20	.	0.03614457831325301	.	A:3:C:0:G:80:T:0:N:0:O:0	.	3,14,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21737	T	C	T	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:0:C:2:G:0:T:97:N:0:O:0	.	1,79,1,20	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21741	C	T	C	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.056179775280898875	.	A:0:C:75:G:0:T:5:N:0:O:9	.	2,30,3,59	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21743	A	C	A	16	ignore low frequency variant	Pass	False	False	True	146	.	20	.	0.02054794520547945	.	A:143:C:3:G:0:T:0:N:0:O:0	.	0,91,3,55	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	21793	G	A	G	16	ignore low frequency variant	Pass	False	False	True	135	.	20	.	0.022222222222222223	.	A:3:C:0:G:122:T:0:N:0:O:10	.	3,59,0,76	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	22131	G	A	G	16	ignore low frequency variant	Pass	False	False	True	153	.	20	.	0.032679738562091505	.	A:5:C:0:G:145:T:0:N:0:O:3	.	2,80,3,73	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	22132	G	A	G	16	ignore low frequency variant	Pass	False	False	True	163	.	20	.	0.024539877300613498	.	A:4:C:0:G:157:T:0:N:0:O:2	.	4,80,0,83	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	22133	G	A	G	16	ignore low frequency variant	Pass	False	False	True	144	.	20	.	0.020833333333333332	.	A:3:C:0:G:140:T:0:N:0:O:1	.	3,65,0,79	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	22451	T	A	T	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:2:C:0:G:0:T:74:N:0:O:3	.	0,37,2,42	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	22492	A	G	A	16	ignore low frequency variant	Pass	False	False	True	42	.	20	.	0.023809523809523808	.	A:38:C:0:G:1:T:0:N:0:O:3	.	0,9,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	145	.	20	.	0.020689655172413793	.	A:0:C:124:G:0:T:3:N:0:O:18	.	0,122,3,23	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23221	T	C	T	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:0:C:2:G:0:T:77:N:0:O:6	.	0,57,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23245	T	C	T	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.023809523809523808	.	A:0:C:2:G:0:T:82:N:0:O:0	.	1,58,1,26	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23308	T	G	T	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.030612244897959183	.	A:0:C:0:G:3:T:90:N:0:O:5	.	0,42,3,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23403	A	G	G	17	accept high frequency variant	Pass	False	True	True	134	.	20	.	0.9104477611940298	.	A:0:C:0:G:122:T:1:N:0:O:11	.	61,72,61,62	140.0	1614.4	.	.	.	.	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	23440	A	G	A	16	ignore low frequency variant	Pass	False	False	True	90	.	20	.	0.022222222222222223	.	A:87:C:0:G:2:T:1:N:0:O:0	.	2,24,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23441	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:95:T:0:N:0:O:2	.	2,24,0,75	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23544	A	G	A	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.019230769230769232	.	A:98:C:0:G:2:T:0:N:0:O:4	.	2,37,0,67	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23561	G	A	G	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.043010752688172046	.	A:4:C:0:G:80:T:0:N:0:O:9	.	4,23,0,70	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23834	A	G	A	16	ignore low frequency variant	Pass	False	False	True	116	.	20	.	0.02586206896551724	.	A:113:C:0:G:3:T:0:N:0:O:0	.	3,36,0,80	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23874	C	T	C	16	ignore low frequency variant	Pass	False	False	True	104	.	20	.	0.057692307692307696	.	A:0:C:98:G:0:T:6:N:0:O:0	.	0,79,6,25	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23897	C	T	C	16	ignore low frequency variant	Pass	False	False	True	103	.	20	.	0.019417475728155338	.	A:0:C:93:G:0:T:2:N:0:O:8	.	0,59,2,44	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23963	A	T	A	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:151:C:0:G:0:T:4:N:0:O:0	.	2,73,2,82	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	23965	T	A	T	16	ignore low frequency variant	Pass	False	False	True	78	.	20	.	0.02564102564102564	.	A:2:C:1:G:0:T:75:N:0:O:0	.	2,20,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24056	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.033707865168539325	.	A:3:C:0:G:86:T:0:N:0:O:0	.	3,13,0,76	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24243	T	A	T	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.02631578947368421	.	A:2:C:0:G:0:T:68:N:0:O:6	.	0,68,2,8	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24276	G	A	G	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.05063291139240506	.	A:4:C:0:G:75:T:0:N:0:O:0	.	4,10,0,69	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24277	G	A	G	16	ignore low frequency variant	Pass	False	False	True	84	.	20	.	0.047619047619047616	.	A:4:C:0:G:79:T:0:N:0:O:1	.	4,13,0,71	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24332	G	A	G	16	ignore low frequency variant	Pass	False	False	True	99	.	20	.	0.020202020202020204	.	A:2:C:0:G:96:T:0:N:0:O:1	.	2,38,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24394	A	G	A	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.026785714285714284	.	A:109:C:0:G:3:T:0:N:0:O:0	.	3,43,0,69	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24619	A	G	A	16	ignore low frequency variant	Pass	False	False	True	128	.	20	.	0.0234375	.	A:121:C:0:G:3:T:0:N:0:O:4	.	3,64,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24959	G	A	G	16	ignore low frequency variant	Pass	False	False	True	123	.	20	.	0.024390243902439025	.	A:3:C:0:G:120:T:0:N:0:O:0	.	2,57,1,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	24982	T	C	N	18	ambiguous base in consensus	Check	False	False	False	38	.	20	.	0.05263157894736842	.	A:0:C:2:G:0:T:35:N:0:O:1	.	2,24,0,14	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	25061	G	A	G	16	ignore low frequency variant	Pass	False	False	True	92	.	20	.	0.021739130434782608	.	A:2:C:0:G:89:T:0:N:0:O:1	.	1,34,1,58	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25486	A	T	A	16	ignore low frequency variant	Pass	False	False	True	114	.	20	.	0.02631578947368421	.	A:110:C:0:G:0:T:3:N:0:O:1	.	3,52,0,62	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25488	T	C	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:2:G:0:T:93:N:0:O:0	.	0,56,2,39	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25556	T	G	T	16	ignore low frequency variant	Pass	False	False	True	95	.	20	.	0.021052631578947368	.	A:0:C:0:G:2:T:92:N:0:O:1	.	2,41,0,54	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25563	G	T	T	17	accept high frequency variant	Pass	False	True	True	111	.	20	.	1.0	.	A:0:C:0:G:0:T:111:N:0:O:0	.	47,47,64,64	349.237	1945.2	.	.	.	.	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	25613	C	G	C	16	ignore low frequency variant	Pass	False	False	True	70	.	20	.	0.02857142857142857	.	A:0:C:64:G:2:T:0:N:0:O:4	.	0,18,2,52	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25614	C	A	C	16	ignore low frequency variant	Pass	False	False	True	125	.	20	.	0.024	.	A:3:C:112:G:0:T:0:N:0:O:10	.	3,68,0,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25699	G	A	G	16	ignore low frequency variant	Pass	False	False	True	112	.	20	.	0.017857142857142856	.	A:2:C:0:G:91:T:0:N:0:O:19	.	2,40,0,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25802	A	C	A	16	ignore low frequency variant	Pass	False	False	True	58	.	20	.	0.10344827586206896	.	A:51:C:6:G:0:T:0:N:0:O:1	.	0,29,6,29	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25866	A	G	A	16	ignore low frequency variant	Pass	False	False	True	100	.	20	.	0.02	.	A:95:C:0:G:2:T:0:N:0:O:3	.	2,36,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	25922	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:0:G:89:T:0:N:0:O:0	.	2,30,0,61	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26131	C	A	C	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.02197802197802198	.	A:2:C:82:G:0:T:0:N:0:O:7	.	0,67,2,24	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26132	A	C	A	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:77:C:2:G:0:T:0:N:0:O:0	.	0,47,2,32	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26456	C	T	C	16	ignore low frequency variant	Pass	False	False	True	82	.	20	.	0.024390243902439025	.	A:0:C:79:G:0:T:2:N:0:O:1	.	0,28,2,54	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	26522	C	T	C	16	ignore low frequency variant	Pass	False	False	True	80	.	20	.	0.025	.	A:0:C:78:G:0:T:2:N:0:O:0	.	0,52,2,28	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26538	G	A	G	16	ignore low frequency variant	Pass	False	False	True	87	.	20	.	0.022988505747126436	.	A:2:C:0:G:85:T:0:N:0:O:0	.	2,21,0,66	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26549	C	T	C	16	ignore low frequency variant	Pass	False	False	True	233	.	20	.	0.02145922746781116	.	A:0:C:228:G:0:T:5:N:0:O:0	.	0,202,5,31	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26708	A	T	A	16	ignore low frequency variant	Pass	False	False	True	119	.	20	.	0.07563025210084033	.	A:107:C:0:G:0:T:9:N:0:O:3	.	9,39,0,80	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26709	G	A	G	16	ignore low frequency variant	Pass	False	False	True	91	.	20	.	0.054945054945054944	.	A:5:C:0:G:85:T:0:N:0:O:1	.	5,12,0,79	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	26713	G	T	G	16	ignore low frequency variant	Pass	False	False	True	240	.	20	.	0.016666666666666666	.	A:0:C:0:G:196:T:4:N:0:O:40	.	4,155,0,85	.	.	.	.	.	mismatch(s)	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	27103	C	T	C	16	ignore low frequency variant	Pass	False	False	True	76	.	20	.	0.039473684210526314	.	A:0:C:73:G:0:T:3:N:0:O:0	.	0,61,3,15	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	27410	T	C	T	16	ignore low frequency variant	Pass	False	False	True	113	.	20	.	0.02654867256637168	.	A:0:C:3:G:0:T:110:N:0:O:0	.	0,56,3,57	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	27714	A	G	A	16	ignore low frequency variant	Pass	False	False	True	122	.	20	.	0.02459016393442623	.	A:118:C:0:G:3:T:0:N:0:O:1	.	3,51,0,71	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	27746	G	A	G	16	ignore low frequency variant	Pass	False	False	True	85	.	20	.	0.023529411764705882	.	A:2:C:0:G:81:T:0:N:0:O:2	.	1,13,1,72	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28168	A	G	A	12	misc mixed variant	Check	False	False	True	116	.	20	.	0.5086206896551724	.	A:57:C:0:G:59:T:0:N:0:O:0	.	34,61,25,55	192.867	.	.	.	.	mismatch(m+s)	mixed position	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28220	A	T	A	16	ignore low frequency variant	Pass	False	False	True	93	.	20	.	0.021505376344086023	.	A:89:C:0:G:0:T:2:N:0:O:2	.	2,37,0,56	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28696	A	G	A	16	ignore low frequency variant	Pass	False	False	True	98	.	20	.	0.04081632653061224	.	A:91:C:0:G:4:T:0:N:0:O:3	.	4,31,0,67	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28774	G	A	G	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.020833333333333332	.	A:2:C:0:G:94:T:0:N:0:O:0	.	0,61,2,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28780	A	G	A	16	ignore low frequency variant	Pass	False	False	True	66	.	20	.	0.030303030303030304	.	A:64:C:0:G:2:T:0:N:0:O:0	.	2,8,0,58	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28781	G	A	G	16	ignore low frequency variant	Pass	False	False	True	77	.	20	.	0.025974025974025976	.	A:2:C:0:G:74:T:0:N:0:O:1	.	2,11,0,66	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28786	C	T	C	16	ignore low frequency variant	Pass	False	False	True	96	.	20	.	0.03125	.	A:0:C:91:G:0:T:3:N:0:O:2	.	0,61,3,35	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28916	G	A	G	16	ignore low frequency variant	Pass	False	False	True	94	.	20	.	0.0425531914893617	.	A:4:C:0:G:90:T:0:N:0:O:0	.	4,22,0,72	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	28932	C	T	C	16	ignore low frequency variant	Pass	False	False	True	79	.	20	.	0.02531645569620253	.	A:0:C:70:G:0:T:2:N:0:O:7	.	0,54,2,25	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29022	C	T	C	16	ignore low frequency variant	Pass	False	False	True	155	.	20	.	0.025806451612903226	.	A:0:C:150:G:0:T:4:N:0:O:1	.	0,135,4,20	.	.	.	.	.	mismatch(s)	.	.	strand bias: low +AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29055	A	C	A	16	ignore low frequency variant	Pass	False	False	True	44	.	20	.	0.022727272727272728	.	A:43:C:1:G:0:T:0:N:0:O:0	.	0,11,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29056	A	G	A	16	ignore low frequency variant	Pass	False	False	True	35	.	20	.	0.02857142857142857	.	A:34:C:0:G:1:T:0:N:0:O:0	.	0,2,1,33	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29058	G	A	G	16	ignore low frequency variant	Pass	False	False	True	67	.	20	.	0.029850746268656716	.	A:2:C:0:G:63:T:0:N:0:O:2	.	2,5,0,62	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29156	G	A	G	16	ignore low frequency variant	Pass	False	False	True	89	.	20	.	0.02247191011235955	.	A:2:C:0:G:87:T:0:N:0:O:0	.	2,29,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29224	G	A	G	16	ignore low frequency variant	Pass	False	False	True	106	.	20	.	0.02830188679245283	.	A:3:C:0:G:103:T:0:N:0:O:0	.	3,46,0,60	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29392	G	A	G	16	ignore low frequency variant	Pass	False	False	True	111	.	20	.	0.02702702702702703	.	A:3:C:0:G:107:T:0:N:0:O:1	.	3,15,0,96	.	.	.	.	.	mismatch(s)	.	.	strand bias: low -AF	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29427	G	A	G	16	ignore low frequency variant	Pass	False	False	True	136	.	20	.	0.022058823529411766	.	A:3:C:0:G:117:T:0:N:0:O:16	.	3,42,0,94	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29658	A	G	A	16	ignore low frequency variant	Pass	False	False	True	267	.	20	.	0.02247191011235955	.	A:258:C:0:G:6:T:0:N:0:O:3	.	6,123,0,144	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	29755	G	C	G	16	ignore low frequency variant	Pass	False	False	True	101	.	20	.	0.019801980198019802	.	A:0:C:2:G:95:T:0:N:0:O:4	.	2,37,0,64	.	.	.	.	.	mismatch(s)	.	.	.	.	not in nextstrain
MDHP-00137	artic-pipeline	NB12	MN908947.3	1001	G	N	N	20	ambiguous base due to indel	Pass	.	False	False	304	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MDHP-00137	artic-pipeline	NB12	MN908947.3	24981	C	N	N	20	ambiguous base due to indel	Pass	.	False	False	157	.	20	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
