
Clock type: CPU
Ordered by: totaltime, desc

name                                                                                                                      ncall       tsub      ttot      tavg      
/home/johannes/scms/snakemake/snakemake/__init__.py:40 snakemake                                                          1           0.000000  462.8158  462.8158
/home/johannes/scms/snakemake/snakemake/workflow.py:475 Workflow.execute                                                  1           0.000000  458.2501  458.2501
/home/johannes/scms/snakemake/snakemake/scheduler.py:392 JobScheduler.schedule                                            1           0.004789  275.7548  275.7548
/home/johannes/scms/snakemake/snakemake/scheduler.py:471 JobScheduler.run                                                 10          0.000000  275.1784  27.51784
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:123 DryrunExecutor.run_jobs                                 10          0.221136  275.1784  27.51784
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:138 DryrunExecutor.run                                      81002       0.476616  274.9573  0.003394
/home/johannes/scms/snakemake/snakemake/scheduler.py:495 JobScheduler._proceed                                            81002       18.12581  150.7820  0.001861
/home/johannes/scms/snakemake/snakemake/dag.py:171 DAG.init                                                               1           0.153224  134.3739  134.3739
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:149 DryrunExecutor._run                                     81002       0.413268  123.6987  0.001527
/home/johannes/scms/snakemake/snakemake/scheduler.py:368 JobScheduler.open_jobs                                           54004       122.5919  122.6618  0.002271
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:170 DryrunExecutor.printjob                                 81002       0.538530  115.7503  0.001429
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:156 DryrunExecutor.printjob                                 81002       0.230046  114.8147  0.001417
/home/johannes/scms/snakemake/snakemake/jobs.py:909 Job.log_info                                                          81002       3.058366  114.5846  0.001415
/home/johannes/scms/snakemake/snakemake/logging.py:166 Logger.handler                                                     432010      1.227628  83.46636  0.000193
/home/johannes/scms/snakemake/snakemake/logging.py:274 Logger.text_handler                                                432010      3.443954  82.23874  0.000190
/home/johannes/scms/snakemake/snakemake/logging.py:217 Logger.job_info                                                    81002       0.182257  80.26256  0.000991
/home/johannes/scms/snakemake/snakemake/dag.py:697 DAG.update                                                             108001/1    1.530738  70.68482  0.000654
/home/johannes/scms/snakemake/snakemake/dag.py:785 DAG.update_                                                            108001/1    1.605676  70.59487  0.000654
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1424 Logger.info                270008      1.400546  66.92715  0.000248
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1553 Logger._log                270012      1.469924  65.14133  0.000241
/home/johannes/scms/snakemake/snakemake/dag.py:875 DAG.update_needrun                                                     2           3.375239  60.37870  30.18935
/home/johannes/scms/snakemake/snakemake/dag.py:1458 DAG.collect_potential_dependencies                                    81002       1.208175  41.70862  0.000515
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1579 Logger.handle              270012      0.906120  41.36312  0.000153
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1633 Logger.callHandlers        270012      1.498447  40.08805  0.000148
/home/johannes/scms/snakemake/snakemake/dag.py:1568 DAG.file2jobs                                                         108000      0.727353  39.20900  0.000363
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:937 ColorizingStreamHandler.handle  540024      3.307973  38.58960  0.000071
/home/johannes/scms/snakemake/snakemake/dag.py:1320 DAG.new_job                                                           108001      0.873686  36.45678  0.000338
/home/johannes/scms/snakemake/snakemake/dag.py:1143 DAG.postprocess                                                       1           0.006651  35.91243  35.91243
/home/johannes/scms/snakemake/snakemake/jobs.py:82 JobFactory.new                                                         81002       0.567449  29.30049  0.000362
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/runners.py:8 run                            27001       0.462521  29.20907  0.001082
/home/johannes/scms/snakemake/snakemake/jobs.py:149 Job.__init__                                                          81002       1.716014  28.56329  0.000353
/home/johannes/scms/snakemake/snakemake/io.py:225 _IOFile.wrapper                                                         702004      3.075523  26.62949  0.000038
/home/johannes/scms/snakemake/snakemake/io.py:427 _IOFile.exists                                                          621003      1.580531  25.57748  0.000041
/home/johannes/scms/snakemake/snakemake/logging.py:326 timestamp                                                          81002       0.578182  21.84146  0.000270
/home/johannes/scms/snakemake/snakemake/dag.py:1495 DAG.bfs                                                               1944074     11.61017  21.45404  0.000011
..l/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:580 _UnixSelectorEventLoop.run_until_complete  54002       0.520745  20.45798  0.000379
/home/johannes/scms/snakemake/snakemake/io.py:120 ExistsDict.__contains__                                                 729004      1.779459  19.40612  0.000027
/home/johannes/scms/snakemake/snakemake/io.py:254 _IOFile.inventory                                                       27000       0.129759  18.89944  0.000700
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1538 Logger.makeRecord          270012      0.923094  18.27728  0.000068
..s/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:557 _UnixSelectorEventLoop.run_forever  54002       0.763587  17.95732  0.000333
/home/johannes/scms/snakemake/snakemake/logging.py:60 ColorizingStreamHandler.emit                                        270012      2.767293  17.83512  0.000066
/home/johannes/scms/snakemake/snakemake/dag.py:199 DAG.check_directory_outputs                                            1           0.296510  17.82156  17.82156
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:284 LogRecord.__init__          270012      6.194712  17.35418  0.000064
/home/johannes/scms/snakemake/snakemake/io.py:1357 InputFiles.__init__                                                    567035      4.777117  16.69381  0.000029
..es/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:1784 _UnixSelectorEventLoop._run_once  108010      0.979993  16.35180  0.000151
/home/johannes/scms/snakemake/snakemake/io.py:245 _IOFile.wrapper                                                         756045      2.424102  16.20092  0.000021
/home/johannes/scms/snakemake/snakemake/jobs.py:554 Job.missing_output                                                    216000      2.430125  16.07164  0.000074
/home/johannes/scms/snakemake/snakemake/rules.py:771 Rule.expand_input                                                    81002       0.788634  14.13058  0.000174
/home/johannes/scms/snakemake/snakemake/rules.py:690 Rule._apply_wildcards                                                270007      1.873467  14.01837  0.000052
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:79 Handle._run                    108024      0.248786  13.90183  0.000129
/home/johannes/scms/snakemake/snakemake/dag.py:202 <setcomp>                                                              1           0.310603  13.71068  13.71068
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1174 FileHandler.emit           270012      0.749907  13.11554  0.000049
/home/johannes/scms/snakemake/snakemake/dag.py:358 DAG.needrun_jobs                                                       810031      2.073560  13.10595  0.000016
/home/johannes/scms/snakemake/snakemake/jobs.py:406 Job.shellcmd                                                          81002       0.204289  13.05503  0.000161
/home/johannes/scms/snakemake/snakemake/jobs.py:830 Job.format_wildcards                                                  27001       1.281912  12.85074  0.000476
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1058 ColorizingStreamHandler.flush  540025      3.494418  12.52035  0.000023
/home/johannes/scms/snakemake/snakemake/dag.py:898 update_needrun                                                         162004      1.372510  12.48822  0.000077
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1069 FileHandler.emit           270012      1.442323  12.36563  0.000046
/home/johannes/scms/snakemake/snakemake/io.py:938 is_flagged                                                              2619117     6.516375  11.93336  0.000005
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:914 ColorizingStreamHandler.format  540024      1.270364  11.29378  0.000021
/home/johannes/scms/snakemake/snakemake/io.py:659 _IOFile.apply_wildcards                                                 189001      1.178229  11.24493  0.000059
/home/johannes/scms/snakemake/snakemake/dag.py:352 DAG.jobs                                                               972036      1.509835  10.98298  0.000011
/home/johannes/scms/snakemake/snakemake/common.py:117 lazy_property.__get__                                               2052043     6.065561  10.66965  0.000005
/home/johannes/scms/snakemake/snakemake/dag.py:884 update_output_mintime                                                  162004      0.676155  10.55568  0.000065
/home/johannes/scms/snakemake/snakemake/io.py:139 IOCache._mtime_inventory                                                1           0.454557  10.49596  10.49596
/home/johannes/scms/snakemake/snakemake/io.py:136 IOCache.mtime_inventory                                                 1           0.000000  10.49596  10.49596
/home/johannes/scms/snakemake/snakemake/io.py:315 _IOFile.get_inventory_parent                                            729004      1.588572  10.44888  0.000014
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:651 Formatter.format            540024      2.762671  10.02341  0.000019
/home/johannes/scms/snakemake/snakemake/jobs.py:534 Job.output_mintime                                                    162004      0.489649  9.879524  0.000061
/home/johannes/scms/snakemake/snakemake/jobs.py:1505 Reason.__bool__                                                      567014      1.898841  9.537671  0.000017
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:150 dirname                            729015      4.478844  8.860309  0.000012
/home/johannes/scms/snakemake/snakemake/rules.py:874 Rule.expand_output                                                   81002       0.865354  8.654522  0.000107
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:372 abspath                            162016      1.025961  8.422621  0.000052
/home/johannes/scms/snakemake/snakemake/jobs.py:538 <genexpr>                                                             162004      0.639559  8.224063  0.000051
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:387 realpath                           81001       0.263139  8.167007  0.000101
/home/johannes/scms/snakemake/snakemake/logging.py:283 job_info                                                           486008      2.271169  8.164959  0.000017
/home/johannes/scms/snakemake/snakemake/utils.py:382 format                                                               27001       1.002614  7.539552  0.000279
/home/johannes/scms/snakemake/snakemake/jobs.py:673 Job.check_protected_output                                            81002       0.786645  7.535080  0.000093
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:165 Formatter.vformat                     54001       0.213996  7.528853  0.000139
/home/johannes/scms/snakemake/snakemake/jobs.py:304 Job.resources                                                         324009      0.709749  7.452403  0.000023
/home/johannes/scms/snakemake/snakemake/io.py:345 _IOFile.is_remote                                                       1620058     2.789805  7.340690  0.000005
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:171 Formatter._vformat                    189002/5..  2.141993  7.270323  0.000038
/home/johannes/scms/snakemake/snakemake/rules.py:772 concretize_iofile                                                    108000      0.358386  6.733271  0.000062
/home/johannes/scms/snakemake/snakemake/rules.py:932 Rule.expand_resources                                                81002       0.963665  6.650069  0.000082
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:162 SequenceFormatter.format              27001       0.092740  5.960280  0.000221
/home/johannes/scms/snakemake/snakemake/jobs.py:674 <lambda>                                                              81001       0.256410  5.639876  0.000070
/home/johannes/scms/snakemake/snakemake/io.py:453 _IOFile.protected                                                       81001       0.232664  5.383466  0.000066
/home/johannes/scms/snakemake/snakemake/dag.py:1263 DAG.finish                                                            81002       0.900135  5.239477  0.000065
/home/johannes/scms/snakemake/snakemake/io.py:745 _IOFile.__hash__                                                        5265032     5.220239  5.220239  0.000001
/home/johannes/scms/snakemake/snakemake/rules.py:875 <genexpr>                                                            162003      0.226315  5.176265  0.000032
/home/johannes/scms/snakemake/snakemake/io.py:187 IOFile                                                                  216010      0.469240  4.913135  0.000023
/home/johannes/scms/snakemake/snakemake/jobs.py:42 format_files                                                           351005      1.163953  4.748988  0.000014
/home/johannes/scms/snakemake/snakemake/io.py:1412 Wildcards._add_name                                                    297004      0.981260  4.480994  0.000015
/home/johannes/scms/snakemake/snakemake/io.py:201 __new__                                                                 216010      1.484639  4.443895  0.000021
/home/johannes/scms/snakemake/snakemake/dag.py:1094 DAG.update_ready                                                      81003       1.085148  4.421916  0.000055
/home/johannes/scms/snakemake/snakemake/workflow.py:1047 Workflow.include                                                 1           0.000000  4.389199  4.389199
/home/johannes/scms/snakemake-paper-2020/resources/hello-world/Snakefile:1 <module>                                       1           0.000000  4.342584  4.342584
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:756 new_event_loop                27001       0.096529  4.203940  0.000156
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:41 _get_sep                            1566079     2.718515  4.110518  0.000003
/home/johannes/scms/snakemake/snakemake/dag.py:2034 DAG.stats                                                             18          0.000000  4.085803  0.226989
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/collections/__init__.py:608 Counter.update          6           0.000000  4.083921  0.680654
..local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:650 _UnixDefaultEventLoopPolicy.new_event_loop  27001       0.039931  4.077453  0.000151
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:334 normpath                           162018      2.231007  4.043133  0.000025
..annes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/unix_events.py:53 _UnixSelectorEventLoop.__init__  27001       0.076523  4.037522  0.000150
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1502 Logger.findCaller          270012      1.903261  4.031004  0.000015
/home/johannes/scms/snakemake/snakemake/logging.py:229 Logger.dag_debug                                                   324003      0.845202  3.988419  0.000012
..s/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/selector_events.py:54 _UnixSelectorEventLoop.__init__  27001       0.262875  3.960999  0.000147
/home/johannes/scms/snakemake/snakemake/logging.py:455 format_dict                                                        162004      1.324788  3.940255  0.000024
/home/johannes/scms/snakemake/snakemake/io.py:113 ExistsDict.__getitem__                                                  675003      1.146602  3.843667  0.000006
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:396 _joinrealpath                      81001       0.659559  3.710841  0.000046
..ohannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:894 ColorizingStreamHandler.acquire  1080051     2.493494  3.694838  0.000003
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:490 commonpath                         162000      1.662320  3.694542  0.000023
..ohannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:901 ColorizingStreamHandler.release  1080051     2.385342  3.614671  0.000003
/home/johannes/scms/snakemake/snakemake/rules.py:887 Rule.expand_log                                                      162004      0.739195  3.508831  0.000022
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:117 splitext                           270012      1.303603  3.448777  0.000013
/home/johannes/scms/snakemake/snakemake/dag.py:1338 DAG.cache_job                                                         81002       0.326230  3.447649  0.000043
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:635 Formatter.formatMessage     540024      1.241887  3.406958  0.000006
/home/johannes/scms/snakemake/snakemake/dag.py:1031 DAG.update_priority                                                   1           0.246509  3.394505  3.394505
/home/johannes/scms/snakemake/snakemake/io.py:879 apply_wildcards                                                         189001      0.460209  3.354954  0.000018
/home/johannes/scms/snakemake/snakemake/io.py:1421 Wildcards._set_name                                                    297004      1.457836  3.305816  0.000011
/home/johannes/scms/snakemake/snakemake/jobs.py:273 Job.benchmark                                                         621012      1.515858  3.305158  0.000005
/home/johannes/scms/snakemake/snakemake/jobs.py:1466 Reason.__str__                                                       81002       1.348925  3.279211  0.000040
/home/johannes/scms/snakemake/snakemake/dag.py:391 DAG.noneedrun_finished                                                 810021      2.008658  3.237885  0.000004
/home/johannes/scms/snakemake/snakemake/io.py:1462 OutputFiles._allitems                                                  378015      1.383526  3.177880  0.000008
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:629 Formatter.usesTime          540024      1.155351  3.142397  0.000006
/home/johannes/scms/snakemake/snakemake/jobs.py:259 Job.params                                                            27001       0.176607  3.107420  0.000115
/home/johannes/scms/snakemake/snakemake/dag.py:225 DAG.update_checkpoint_outputs                                          2           0.000000  3.027873  1.513937
/home/johannes/scms/snakemake/snakemake/dag.py:226 <genexpr>                                                              2           0.000000  3.027873  1.513937
/home/johannes/scms/snakemake/snakemake/dag.py:219 DAG.checkpoint_jobs                                                    2           0.323071  3.027873  1.513937
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:71 join                                324023      1.528188  2.989695  0.000009
/home/johannes/scms/snakemake/snakemake/jobs.py:1032 Job.products                                                         81002       0.342839  2.981653  0.000037
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:140 basename                           270012      1.416045  2.979915  0.000011
/home/johannes/scms/snakemake/snakemake/output_index.py:40 OutputIndex.match                                              108000      1.148145  2.979884  0.000028
/home/johannes/scms/snakemake/snakemake/rules.py:827 Rule.expand_params                                                   27001       0.430055  2.907537  0.000108
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/re.py:203 sub                                       189002      0.429424  2.894745  0.000015
/home/johannes/scms/snakemake/snakemake/persistence.py:150 Persistence.lock_warn_only                                     1           0.003327  2.871382  2.871382
/home/johannes/scms/snakemake/snakemake/persistence.py:131 Persistence.locked                                             1           0.283134  2.868055  2.868055
/home/johannes/scms/snakemake/snakemake/dag.py:1155 DAG.handle_pipes                                                      1           0.249825  2.704765  2.704765
/home/johannes/scms/snakemake/snakemake/dag.py:1560 DAG.rule2job                                                          1           0.000000  2.683890  2.683890
/home/johannes/scms/snakemake/snakemake/jobs.py:462 Job.expanded_output                                                   648012      1.779198  2.651594  0.000004
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/home/johannes/scms/snakemake/snakemake/dag.py:1242 DAG.update_checkpoint_dependencies                                    1           0.000000  2.621802  2.621802
/home/johannes/scms/snakemake/snakemake/workflow.py:1202 decorate                                                         5           0.003333  2.601364  0.520273
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/home/johannes/scms/snakemake/snakemake/rules.py:346 Rule.set_input                                                       4           0.000000  2.598031  0.649508
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/home/johannes/scms/snakemake/snakemake/rules.py:1030 Rule.get_wildcards                                                  81002       0.609078  2.505472  0.000031
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/home/johannes/scms/snakemake/snakemake/jobs.py:54 jobfiles                                                               2           0.156560  2.361743  1.180871
/home/johannes/scms/snakemake/snakemake/utils.py:319 SequenceFormatter.format_field                                       81001       0.449916  2.243336  0.000028
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/home/johannes/scms/snakemake/snakemake/dag.py:2037 <genexpr>                                                             81004       0.148094  2.207450  0.000027
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/home/johannes/scms/snakemake/snakemake/io.py:741 _IOFile.__eq__                                                          891003      1.447197  2.147431  0.000002
/home/johannes/scms/snakemake/snakemake/dag.py:230 DAG.update_jobids                                                      2           0.269826  2.098633  1.049316
/home/johannes/scms/snakemake/snakemake/dag.py:918 <genexpr>                                                              54002       0.093278  2.088698  0.000039
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/home/johannes/scms/snakemake/snakemake/dag.py:372 DAG.finished_jobs                                                      81004       0.346525  2.059356  0.000025
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/home/johannes/scms/snakemake/snakemake/dag.py:1046 DAG.update_groups                                                     1           0.143236  1.928761  1.928761
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/home/johannes/scms/snakemake/snakemake/scheduler.py:489 JobScheduler._free_resources                                     81002       0.916494  1.815622  0.000022
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/home/johannes/scms/snakemake/snakemake/logging.py:284 format_item                                                        567014      1.177745  1.698850  0.000003
/home/johannes/scms/snakemake/snakemake/io.py:1081 expand                                                                 1           0.000000  1.697941  1.697941
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/home/johannes/scms/snakemake/snakemake/io.py:395 _IOFile.check                                                           189001      0.865804  1.663123  0.000009
/home/johannes/scms/snakemake/snakemake/rules.py:1010 Rule.is_producer                                                    108000      0.329475  1.640813  0.000015
/home/johannes/scms/snakemake/snakemake/dag.py:383 DAG.needrun                                                            1971047     1.627053  1.627053  0.000001
/home/johannes/scms/snakemake/snakemake/io.py:913 is_callable                                                             297001      0.980941  1.606772  0.000005
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/home/johannes/scms/snakemake/snakemake/dag.py:2036 <genexpr>                                                             81004       0.123261  1.515346  0.000019
/home/johannes/scms/snakemake/snakemake/workflow.py:791 <genexpr>                                                         81002       0.131640  1.452401  0.000018
/home/johannes/scms/snakemake/snakemake/dag.py:1284 <listcomp>                                                            81002       0.543236  1.433910  0.000018
/home/johannes/scms/snakemake/snakemake/rules.py:935 apply                                                                162004      0.844264  1.419342  0.000009
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/home/johannes/scms/snakemake/snakemake/io.py:922 AnnotatedString.__init__                                                189001      0.426089  1.383711  0.000007
/home/johannes/scms/snakemake/snakemake/io.py:257 _IOFile._inventory                                                      27000       0.193007  1.380897  0.000051
/home/johannes/scms/snakemake/snakemake/logging.py:320 indent                                                             486008      0.961282  1.364576  0.000003
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/home/johannes/scms/snakemake/snakemake/rules.py:362 Rule.products                                                        189021      0.835467  1.314757  0.000007
/home/johannes/scms/snakemake/snakemake/utils.py:309 SequenceFormatter.format_element                                     81001       0.246560  1.257595  0.000016
/home/johannes/scms/snakemake/snakemake/rules.py:982 Rule.expand_group                                                    243006      0.751842  1.210538  0.000005
/home/johannes/scms/snakemake/snakemake/io.py:1458 Resources.items                                                        486012      0.858555  1.184985  0.000002
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/home/johannes/scms/snakemake/snakemake/dag.py:1247 <listcomp>                                                            1           0.119929  1.112648  1.112648
/home/johannes/scms/snakemake/snakemake/dag.py:1137 DAG.close_remote_objects                                              1           0.149885  1.109151  1.109151
/home/johannes/scms/snakemake/snakemake/dag.py:423 DAG.incomplete_files                                                   1           0.000000  1.102687  1.102687
/home/johannes/scms/snakemake/snakemake/dag.py:303 DAG.check_incomplete                                                   1           0.000000  1.102687  1.102687
/home/johannes/scms/snakemake/snakemake/dag.py:428 <genexpr>                                                              1           0.126590  1.102687  1.102687
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/home/johannes/scms/snakemake/snakemake/logging.py:75 ColorizingStreamHandler.decorate                                    270012      0.686518  1.040416  0.000004
/home/johannes/scms/snakemake/snakemake/utils.py:354 QuotedFormatter.format_field                                         81001       0.484951  1.011035  0.000012
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/home/johannes/scms/snakemake/snakemake/utils.py:326 <genexpr>                                                            108002      0.168451  0.992588  0.000009
/home/johannes/scms/snakemake/snakemake/dag.py:245 DAG.cleanup                                                            1           0.059963  0.982707  0.982707
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/home/johannes/scms/snakemake/snakemake/rules.py:358 Rule.output                                                          972047      0.976607  0.976607  0.000001
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/home/johannes/scms/snakemake/snakemake/output_index.py:41 match_pattern                                                  216000      0.587062  0.956499  0.000004
/home/johannes/scms/snakemake/snakemake/dag.py:402 DAG.finished                                                           1161027     0.952106  0.952106  0.000001
/home/johannes/scms/snakemake/snakemake/dag.py:398 DAG.reason                                                             837010      0.880910  0.944214  0.000001
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/home/johannes/scms/snakemake/snakemake/io.py:709 _IOFile.match                                                           189001      0.515805  0.923505  0.000005
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/home/johannes/scms/snakemake/snakemake/jobs.py:1454 Reason.updated_input_run                                             81002       0.898734  0.898734  0.000011
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/home/johannes/scms/snakemake/snakemake/dag.py:539 DAG.check_periodic_wildcards                                           108001      0.437578  0.871845  0.000008
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/home/johannes/scms/snakemake/snakemake/dag.py:1495 <lambda>                                                              1134028     0.837009  0.837009  0.000001
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/selectors.py:451 EpollSelector.select               108010      0.465880  0.811939  0.000008
/home/johannes/scms/snakemake/snakemake/rules.py:311 Rule.benchmark                                                       891035      0.799207  0.799207  0.000001
/home/johannes/scms/snakemake/snakemake/jobs.py:887 Job.is_local                                                          243006      0.520901  0.792184  0.000003
/home/johannes/scms/snakemake/snakemake/rules.py:1074 Rule.__hash__                                                       972017      0.788957  0.788957  0.000001
/home/johannes/scms/snakemake/snakemake/dag.py:991 DAG.in_until                                                           108000      0.329062  0.755958  0.000007
/home/johannes/scms/snakemake/snakemake/jobs.py:585 Job.unique_input                                                      189002      0.372759  0.755568  0.000004
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/home/johannes/scms/snakemake/snakemake/io.py:887 format_match                                                            216000      0.499241  0.732227  0.000003
/home/johannes/scms/snakemake/snakemake/io.py:1448 OutputFiles._take_names                                                135003      0.257719  0.728304  0.000005
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/home/johannes/scms/snakemake/snakemake/scheduler.py:481 JobScheduler.get_executor                                        81002       0.284729  0.677319  0.000008
/home/johannes/scms/snakemake/snakemake/rules.py:434 Rule.apply_default_remote                                            27007       0.186516  0.659500  0.000024
/home/johannes/scms/snakemake/snakemake/dag.py:1234 DAG._ready                                                            189002      0.463104  0.640998  0.000003
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/home/johannes/scms/snakemake/snakemake/exceptions.py:153 WorkflowError.__init__                                          108001      0.279538  0.572387  0.000005
/home/johannes/scms/snakemake/snakemake/dag.py:690 DAG.jobid                                                              108003      0.423778  0.570116  0.000005
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/home/johannes/scms/snakemake/snakemake/dag.py:1034 <lambda>                                                              81002       0.203196  0.536315  0.000007
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:751 set_event_loop                54002       0.219624  0.472590  0.000009
/home/johannes/scms/snakemake/snakemake/io.py:1441 OutputFiles._get_names                                                 135003      0.344558  0.470585  0.000003
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/home/johannes/scms/snakemake/snakemake/rules.py:651 Rule.check_wildcards                                                 81001       0.327040  0.443546  0.000005
/home/johannes/scms/snakemake/snakemake/workflow.py:431 Workflow.is_local                                                 324008      0.439214  0.439214  0.000001
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/socket.py:496 socket.close                          54003       0.079835  0.416772  0.000008
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/home/johannes/scms/snakemake/snakemake/logging.py:232 Logger.shellcmd                                                    81002       0.169638  0.412485  0.000005
/home/johannes/scms/snakemake/snakemake/rules.py:1053 get_wildcard_len                                                    81001       0.269626  0.402760  0.000005
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/selectors.py:215 EpollSelector._fileobj_lookup      108004      0.196360  0.399349  0.000004
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/home/johannes/scms/snakemake/snakemake/io.py:441 _IOFile.exists_local                                                    27001       0.079940  0.389717  0.000014
/home/johannes/scms/snakemake/snakemake/jobs.py:255 Job.threads                                                           108003      0.282971  0.386060  0.000004
/home/johannes/scms/snakemake/snakemake/jobs.py:906 Job.is_group                                                          351009      0.380280  0.380280  0.000001
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/home/johannes/scms/snakemake/snakemake/dag.py:406 DAG.dynamic                                                            81002       0.245198  0.358445  0.000004
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<frozen importlib._bootstrap>:211 _call_with_frames_removed                                                               150/5       0.000000  0.219717  0.001465
<frozen importlib._bootstrap>:650 _load_unlocked                                                                          135/4       0.003329  0.219717  0.001628
<frozen importlib._bootstrap>:986 _find_and_load                                                                          140/4       0.003329  0.219717  0.001569
<frozen importlib._bootstrap>:956 _find_and_load_unlocked                                                                 139/4       0.000000  0.219717  0.001581
<frozen importlib._bootstrap_external>:777 SourceFileLoader.exec_module                                                   125/3       0.000000  0.216389  0.001731
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/home/johannes/scms/snakemake/snakemake/logging.py:484 setup_logger                                                       1           0.000000  0.176440  0.176440
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/home/johannes/scms/snakemake/snakemake/dag.py:1118 <genexpr>                                                             81003       0.106168  0.106168  0.000001
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<string>:1 __new__                                                                                                        27175       0.036589  0.069859  0.000003
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/home/johannes/scms/snakemake/snakemake/rules.py:382 Rule.wildcard_names                                                  81002       0.059923  0.059923  0.000001
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<frozen importlib._bootstrap>:1017 _handle_fromlist                                                                       47/33       0.000000  0.053261  0.001133
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<frozen importlib._bootstrap_external>:1302 _get_spec                                                                     138         0.000000  0.019980  0.000145
<frozen importlib._bootstrap_external>:1334 find_spec                                                                     138         0.000000  0.019980  0.000145
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<frozen importlib._bootstrap>:890 _find_spec                                                                              138         0.000000  0.019980  0.000145
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<string>:1 <module>                                                                                                       5           0.000000  0.000000  0.000000
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<frozen importlib._bootstrap>:867 _ImportLockContext.__exit__                                                             421         0.000000  0.000000  0.000000
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<frozen importlib._bootstrap_external>:51 _unpack_uint32                                                                  375         0.000000  0.000000  0.000000
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