
Clock type: CPU
Ordered by: totaltime, desc

name                                                                                                                      ncall       tsub      ttot      tavg      
/home/johannes/scms/snakemake/snakemake/__init__.py:40 snakemake                                                          1           0.000000  342.7314  342.7314
/home/johannes/scms/snakemake/snakemake/workflow.py:475 Workflow.execute                                                  1           0.000000  339.1376  339.1376
/home/johannes/scms/snakemake/snakemake/scheduler.py:392 JobScheduler.schedule                                            1           0.003327  194.6383  194.6383
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:123 DryrunExecutor.run_jobs                                 10          0.218713  194.1789  19.41789
/home/johannes/scms/snakemake/snakemake/scheduler.py:471 JobScheduler.run                                                 10          0.000000  194.1789  19.41789
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:138 DryrunExecutor.run                                      63002       0.459949  193.9602  0.003079
/home/johannes/scms/snakemake/snakemake/dag.py:171 DAG.init                                                               1           0.129835  106.8415  106.8415
/home/johannes/scms/snakemake/snakemake/scheduler.py:495 JobScheduler._proceed                                            63002       12.88346  97.56226  0.001549
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:149 DryrunExecutor._run                                     63002       0.306092  95.93801  0.001523
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:170 DryrunExecutor.printjob                                 63002       0.433392  89.89875  0.001427
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:156 DryrunExecutor.printjob                                 63002       0.207919  89.04365  0.001413
/home/johannes/scms/snakemake/snakemake/jobs.py:909 Job.log_info                                                          63002       2.394932  88.83573  0.001410
/home/johannes/scms/snakemake/snakemake/scheduler.py:368 JobScheduler.open_jobs                                           42004       76.78227  76.83555  0.001829
/home/johannes/scms/snakemake/snakemake/logging.py:166 Logger.handler                                                     336010      0.863609  65.38824  0.000195
/home/johannes/scms/snakemake/snakemake/logging.py:274 Logger.text_handler                                                336010      2.732163  64.52463  0.000192
/home/johannes/scms/snakemake/snakemake/logging.py:217 Logger.job_info                                                    63002       0.147041  62.91447  0.000999
/home/johannes/scms/snakemake/snakemake/dag.py:697 DAG.update                                                             84001/1     1.240184  57.12587  0.000680
/home/johannes/scms/snakemake/snakemake/dag.py:785 DAG.update_                                                            84001/1     1.243627  57.05924  0.000679
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1424 Logger.info                210008      1.085673  52.57948  0.000250
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1553 Logger._log                210012      1.202405  51.19370  0.000244
/home/johannes/scms/snakemake/snakemake/dag.py:875 DAG.update_needrun                                                     2           2.642203  47.13217  23.56609
/home/johannes/scms/snakemake/snakemake/dag.py:1458 DAG.collect_potential_dependencies                                    63002       0.989289  33.62253  0.000534
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1579 Logger.handle              210012      0.836489  33.22909  0.000158
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1633 Logger.callHandlers        210012      1.149871  32.15646  0.000153
/home/johannes/scms/snakemake/snakemake/dag.py:1568 DAG.file2jobs                                                         84000       0.544728  31.61873  0.000376
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:937 ColorizingStreamHandler.handle  420024      2.699307  31.00659  0.000074
/home/johannes/scms/snakemake/snakemake/dag.py:1320 DAG.new_job                                                           84001       0.664826  29.11809  0.000347
/home/johannes/scms/snakemake/snakemake/dag.py:1143 DAG.postprocess                                                       1           0.003329  28.18054  28.18054
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/runners.py:8 run                            21001       0.335666  23.26642  0.001108
/home/johannes/scms/snakemake/snakemake/jobs.py:82 JobFactory.new                                                         63002       0.375835  22.94672  0.000364
/home/johannes/scms/snakemake/snakemake/jobs.py:149 Job.__init__                                                          63002       1.154294  22.40319  0.000356
/home/johannes/scms/snakemake/snakemake/io.py:225 _IOFile.wrapper                                                         546004      2.435097  20.98147  0.000038
/home/johannes/scms/snakemake/snakemake/io.py:427 _IOFile.exists                                                          483003      1.418908  20.33257  0.000042
/home/johannes/scms/snakemake/snakemake/logging.py:326 timestamp                                                          63002       0.442207  18.07489  0.000287
/home/johannes/scms/snakemake/snakemake/dag.py:1495 DAG.bfs                                                               1512074     9.075610  16.66235  0.000011
..l/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:580 _UnixSelectorEventLoop.run_until_complete  42002       0.502781  16.24804  0.000387
/home/johannes/scms/snakemake/snakemake/io.py:120 ExistsDict.__contains__                                                 567004      1.421452  15.40974  0.000027
/home/johannes/scms/snakemake/snakemake/io.py:254 _IOFile.inventory                                                       21000       0.143605  15.39896  0.000733
/home/johannes/scms/snakemake/snakemake/logging.py:60 ColorizingStreamHandler.emit                                        210012      2.208456  15.04319  0.000072
/home/johannes/scms/snakemake/snakemake/dag.py:199 DAG.check_directory_outputs                                            1           0.203145  14.05880  14.05880
..s/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:557 _UnixSelectorEventLoop.run_forever  42002       0.728844  14.05457  0.000335
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1538 Logger.makeRecord          210012      0.673582  13.82465  0.000066
/home/johannes/scms/snakemake/snakemake/io.py:1357 InputFiles.__init__                                                    441035      3.818433  13.20977  0.000030
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:284 LogRecord.__init__          210012      4.712823  13.15107  0.000063
/home/johannes/scms/snakemake/snakemake/io.py:245 _IOFile.wrapper                                                         588045      1.844071  12.87055  0.000022
..es/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:1784 _UnixSelectorEventLoop._run_once  84010       0.776261  12.72526  0.000151
/home/johannes/scms/snakemake/snakemake/jobs.py:554 Job.missing_output                                                    168000      1.718625  12.47189  0.000074
/home/johannes/scms/snakemake/snakemake/rules.py:771 Rule.expand_input                                                    63002       0.627996  11.23912  0.000178
/home/johannes/scms/snakemake/snakemake/rules.py:690 Rule._apply_wildcards                                                210007      1.575110  11.04738  0.000053
/home/johannes/scms/snakemake/snakemake/dag.py:202 <setcomp>                                                              1           0.249729  10.83832  10.83832
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:79 Handle._run                    84024       0.202938  10.81178  0.000129
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1058 ColorizingStreamHandler.flush  420025      2.572760  10.42790  0.000025
/home/johannes/scms/snakemake/snakemake/dag.py:358 DAG.needrun_jobs                                                       630031      1.555106  10.14868  0.000016
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1174 FileHandler.emit           210012      0.593480  10.02699  0.000048
/home/johannes/scms/snakemake/snakemake/dag.py:898 update_needrun                                                         126004      1.038978  9.858774  0.000078
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1069 FileHandler.emit           210012      1.098288  9.433514  0.000045
/home/johannes/scms/snakemake/snakemake/jobs.py:406 Job.shellcmd                                                          63002       0.179837  9.404896  0.000149
/home/johannes/scms/snakemake/snakemake/jobs.py:830 Job.format_wildcards                                                  21001       0.913586  9.225059  0.000439
/home/johannes/scms/snakemake/snakemake/io.py:938 is_flagged                                                              2037117     5.127990  9.110907  0.000004
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:914 ColorizingStreamHandler.format  420024      1.083651  9.076237  0.000022
/home/johannes/scms/snakemake/snakemake/io.py:659 _IOFile.apply_wildcards                                                 147001      0.882248  9.071242  0.000062
/home/johannes/scms/snakemake/snakemake/dag.py:352 DAG.jobs                                                               756036      1.214271  8.584090  0.000011
/home/johannes/scms/snakemake/snakemake/io.py:315 _IOFile.get_inventory_parent                                            567004      1.176570  8.320135  0.000015
/home/johannes/scms/snakemake/snakemake/dag.py:884 update_output_mintime                                                  126004      0.466119  8.292628  0.000066
/home/johannes/scms/snakemake/snakemake/common.py:117 lazy_property.__get__                                               1596043     4.602460  8.221814  0.000005
/home/johannes/scms/snakemake/snakemake/io.py:136 IOCache.mtime_inventory                                                 1           0.000000  8.060873  8.060873
/home/johannes/scms/snakemake/snakemake/io.py:139 IOCache._mtime_inventory                                                1           0.409743  8.060873  8.060873
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:651 Formatter.format            420024      2.279923  7.992586  0.000019
/home/johannes/scms/snakemake/snakemake/jobs.py:534 Job.output_mintime                                                    126004      0.409795  7.826509  0.000062
/home/johannes/scms/snakemake/snakemake/jobs.py:1505 Reason.__bool__                                                      441014      1.418690  7.460015  0.000017
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:150 dirname                            567015      3.748385  7.143565  0.000013
/home/johannes/scms/snakemake/snakemake/rules.py:874 Rule.expand_output                                                   63002       0.625907  6.805108  0.000108
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:372 abspath                            126016      0.792551  6.602285  0.000052
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:387 realpath                           63001       0.276655  6.550239  0.000104
/home/johannes/scms/snakemake/snakemake/jobs.py:538 <genexpr>                                                             126004      0.496040  6.537864  0.000052
/home/johannes/scms/snakemake/snakemake/logging.py:283 job_info                                                           378008      1.577312  6.202959  0.000016
/home/johannes/scms/snakemake/snakemake/jobs.py:304 Job.resources                                                         252009      0.495924  5.928263  0.000024
/home/johannes/scms/snakemake/snakemake/jobs.py:673 Job.check_protected_output                                            63002       0.603483  5.733174  0.000091
/home/johannes/scms/snakemake/snakemake/io.py:345 _IOFile.is_remote                                                       1260058     2.258944  5.707252  0.000005
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:165 Formatter.vformat                     42001       0.222883  5.705459  0.000136
/home/johannes/scms/snakemake/snakemake/utils.py:382 format                                                               21001       0.731987  5.644444  0.000269
/home/johannes/scms/snakemake/snakemake/rules.py:772 concretize_iofile                                                    84000       0.255596  5.547899  0.000066
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:171 Formatter._vformat                    147002/4..  1.631405  5.439037  0.000037
/home/johannes/scms/snakemake/snakemake/rules.py:932 Rule.expand_resources                                                63002       0.755234  5.395734  0.000086
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:162 SequenceFormatter.format              21001       0.087322  4.513811  0.000215
/home/johannes/scms/snakemake/snakemake/jobs.py:674 <lambda>                                                              63001       0.174057  4.375471  0.000069
/home/johannes/scms/snakemake/snakemake/io.py:453 _IOFile.protected                                                       63001       0.182081  4.201414  0.000067
/home/johannes/scms/snakemake/snakemake/dag.py:1263 DAG.finish                                                            63002       0.708985  4.165992  0.000066
/home/johannes/scms/snakemake/snakemake/io.py:745 _IOFile.__hash__                                                        4095032     4.058997  4.058997  0.000001
/home/johannes/scms/snakemake/snakemake/rules.py:875 <genexpr>                                                            126003      0.162411  4.033973  0.000032
/home/johannes/scms/snakemake/snakemake/io.py:187 IOFile                                                                  168010      0.373352  3.890257  0.000023
/home/johannes/scms/snakemake/snakemake/jobs.py:42 format_files                                                           273005      0.874150  3.822132  0.000014
/home/johannes/scms/snakemake/snakemake/io.py:1412 Wildcards._add_name                                                    231004      0.810058  3.664285  0.000016
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:756 new_event_loop                21001       0.056486  3.626068  0.000173
..local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:650 _UnixDefaultEventLoopPolicy.new_event_loop  21001       0.056597  3.549627  0.000169
/home/johannes/scms/snakemake/snakemake/io.py:201 __new__                                                                 168010      1.291077  3.516905  0.000021
..annes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/unix_events.py:53 _UnixSelectorEventLoop.__init__  21001       0.083183  3.493030  0.000166
/home/johannes/scms/snakemake/snakemake/workflow.py:1047 Workflow.include                                                 1           0.000000  3.410799  3.410799
..s/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/selector_events.py:54 _UnixSelectorEventLoop.__init__  21001       0.212936  3.409847  0.000162
/home/johannes/scms/snakemake/snakemake/dag.py:1094 DAG.update_ready                                                      63003       0.854488  3.395289  0.000054
/home/johannes/scms/snakemake-paper-2020/resources/hello-world/Snakefile:1 <module>                                       1           0.000000  3.364196  3.364196
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:41 _get_sep                            1218079     2.273724  3.339422  0.000003
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:334 normpath                           126018      1.884943  3.179856  0.000025
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/collections/__init__.py:608 Counter.update          6           0.000000  3.136730  0.522788
/home/johannes/scms/snakemake/snakemake/dag.py:2034 DAG.stats                                                             18          0.000000  3.136730  0.174263
/home/johannes/scms/snakemake/snakemake/logging.py:455 format_dict                                                        126004      1.141010  3.123470  0.000025
/home/johannes/scms/snakemake/snakemake/dag.py:1338 DAG.cache_job                                                         63002       0.314095  3.115827  0.000049
/home/johannes/scms/snakemake/snakemake/rules.py:887 Rule.expand_log                                                      126004      0.557901  3.089996  0.000025
/home/johannes/scms/snakemake/snakemake/logging.py:229 Logger.dag_debug                                                   252003      0.593423  3.082489  0.000012
/home/johannes/scms/snakemake/snakemake/io.py:113 ExistsDict.__getitem__                                                  525003      0.909249  3.032368  0.000006
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1502 Logger.findCaller          210012      1.443215  2.937547  0.000014
..ohannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:894 ColorizingStreamHandler.acquire  840051      2.008944  2.931293  0.000003
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:490 commonpath                         126000      1.329102  2.927498  0.000023
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:396 _joinrealpath                      63001       0.596088  2.893863  0.000046
/home/johannes/scms/snakemake/snakemake/io.py:879 apply_wildcards                                                         147001      0.347277  2.782152  0.000019
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:117 splitext                           210012      0.961762  2.724102  0.000013
/home/johannes/scms/snakemake/snakemake/jobs.py:1032 Job.products                                                         63002       0.276784  2.672494  0.000042
/home/johannes/scms/snakemake/snakemake/dag.py:1031 DAG.update_priority                                                   1           0.166551  2.657721  2.657721
/home/johannes/scms/snakemake/snakemake/io.py:1421 Wildcards._set_name                                                    231004      1.144108  2.647476  0.000011
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:635 Formatter.formatMessage     420024      1.010768  2.625209  0.000006
..ohannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:901 ColorizingStreamHandler.release  840051      1.821765  2.585017  0.000003
/home/johannes/scms/snakemake/snakemake/jobs.py:273 Job.benchmark                                                         483012      1.164612  2.566240  0.000005
/home/johannes/scms/snakemake/snakemake/dag.py:391 DAG.noneedrun_finished                                                 630021      1.538782  2.531480  0.000004
/home/johannes/scms/snakemake/snakemake/output_index.py:40 OutputIndex.match                                              84000       1.101637  2.524993  0.000030
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:629 Formatter.usesTime          420024      0.906179  2.496286  0.000006
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/re.py:203 sub                                       147002      0.447703  2.434875  0.000017
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:71 join                                252023      1.178682  2.380421  0.000009
/home/johannes/scms/snakemake/snakemake/jobs.py:1466 Reason.__str__                                                       63002       0.923197  2.344156  0.000037
/home/johannes/scms/snakemake/snakemake/dag.py:225 DAG.update_checkpoint_outputs                                          2           0.000000  2.338301  1.169150
/home/johannes/scms/snakemake/snakemake/dag.py:226 <genexpr>                                                              2           0.000000  2.338301  1.169150
/home/johannes/scms/snakemake/snakemake/dag.py:219 DAG.checkpoint_jobs                                                    2           0.226508  2.338301  1.169150
/home/johannes/scms/snakemake/snakemake/jobs.py:267 Job.log                                                               315005      0.489334  2.320958  0.000007
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:140 basename                           210012      1.130655  2.278289  0.000011
/home/johannes/scms/snakemake/snakemake/persistence.py:150 Persistence.lock_warn_only                                     1           0.003331  2.247647  2.247647
/home/johannes/scms/snakemake/snakemake/persistence.py:131 Persistence.locked                                             1           0.189834  2.244316  2.244316
/home/johannes/scms/snakemake/snakemake/io.py:1462 OutputFiles._allitems                                                  294015      1.021309  2.229211  0.000008
/home/johannes/scms/snakemake/snakemake/dag.py:1155 DAG.handle_pipes                                                      1           0.186519  2.108416  2.108416
/home/johannes/scms/snakemake/snakemake/io.py:538 _IOFile.flags                                                           693003      1.402780  2.053254  0.000003
/home/johannes/scms/snakemake/snakemake/dag.py:1560 DAG.rule2job                                                          1           0.000000  2.048243  2.048243
/home/johannes/scms/snakemake/snakemake/rules.py:1030 Rule.get_wildcards                                                  63002       0.493371  2.042729  0.000032
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/home/johannes/scms/snakemake/snakemake/dag.py:1242 DAG.update_checkpoint_dependencies                                    1           0.000000  2.034956  2.034956
/home/johannes/scms/snakemake/snakemake/workflow.py:1202 decorate                                                         5           0.000000  2.012023  0.402405
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/home/johannes/scms/snakemake/snakemake/rules.py:346 Rule.set_input                                                       4           0.000000  2.008691  0.502173
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/home/johannes/scms/snakemake/snakemake/io.py:715 _IOFile.clone_flags                                                     147001      0.587556  1.918736  0.000013
/home/johannes/scms/snakemake/snakemake/rules.py:827 Rule.expand_params                                                   21001       0.274383  1.870756  0.000089
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/home/johannes/scms/snakemake/snakemake/jobs.py:54 jobfiles                                                               2           0.169823  1.854652  0.927326
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/home/johannes/scms/snakemake/snakemake/io.py:741 _IOFile.__eq__                                                          693003      1.279454  1.747425  0.000003
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/home/johannes/scms/snakemake/snakemake/dag.py:918 <genexpr>                                                              42002       0.063249  1.687800  0.000040
/home/johannes/scms/snakemake/snakemake/dag.py:2037 <genexpr>                                                             63004       0.119449  1.687651  0.000027
/home/johannes/scms/snakemake/snakemake/dag.py:230 DAG.update_jobids                                                      2           0.177526  1.661563  0.830781
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/home/johannes/scms/snakemake/snakemake/jobs.py:234 Job.is_valid                                                          63002       0.183085  1.607905  0.000026
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/home/johannes/scms/snakemake/snakemake/utils.py:319 SequenceFormatter.format_field                                       63001       0.322277  1.581735  0.000025
/home/johannes/scms/snakemake/snakemake/dag.py:372 DAG.finished_jobs                                                      63004       0.256402  1.568202  0.000025
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/home/johannes/scms/snakemake/snakemake/io.py:395 _IOFile.check                                                           147001      0.816472  1.512452  0.000010
/home/johannes/scms/snakemake/snakemake/dag.py:1046 DAG.update_groups                                                     1           0.116573  1.512324  1.512324
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/threading.py:441 Semaphore.release                  42004       0.483879  1.463697  0.000035
/home/johannes/scms/snakemake/snakemake/jobs.py:284 Job.group                                                             189006      0.530621  1.445006  0.000008
/home/johannes/scms/snakemake/snakemake/rules.py:1010 Rule.is_producer                                                    84000       0.288911  1.396017  0.000017
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/home/johannes/scms/snakemake/snakemake/scheduler.py:489 JobScheduler._free_resources                                     63002       0.671680  1.358867  0.000022
/home/johannes/scms/snakemake/snakemake/dag.py:383 DAG.needrun                                                            1533047     1.345185  1.345185  0.000001
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/home/johannes/scms/snakemake/snakemake/io.py:913 is_callable                                                             231001      0.792751  1.318087  0.000006
/home/johannes/scms/snakemake/snakemake/io.py:1081 expand                                                                 1           0.000000  1.308937  1.308937
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/home/johannes/scms/snakemake/snakemake/logging.py:466 <genexpr>                                                          231004      0.675939  1.269392  0.000005
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/home/johannes/scms/snakemake/snakemake/logging.py:320 indent                                                             378008      0.765046  1.159972  0.000003
/home/johannes/scms/snakemake/snakemake/io.py:257 _IOFile._inventory                                                      21000       0.172839  1.147520  0.000055
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/home/johannes/scms/snakemake/snakemake/workflow.py:791 <genexpr>                                                         63002       0.106594  1.125865  0.000018
/home/johannes/scms/snakemake/snakemake/rules.py:935 apply                                                                126004      0.678469  1.124970  0.000009
/home/johannes/scms/snakemake/snakemake/io.py:922 AnnotatedString.__init__                                                147001      0.300055  1.103408  0.000008
/home/johannes/scms/snakemake/snakemake/persistence.py:435 Persistence.all_outputfiles                                    1           0.000000  1.095486  1.095486
/home/johannes/scms/snakemake/snakemake/dag.py:2036 <genexpr>                                                             63004       0.109913  1.082510  0.000017
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/home/johannes/scms/snakemake/snakemake/io.py:1495 InputFiles._plainstrings                                               42002       0.142771  1.026073  0.000024
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/home/johannes/scms/snakemake/snakemake/io.py:709 _IOFile.match                                                           147001      0.491570  0.940686  0.000006
/home/johannes/scms/snakemake/snakemake/io.py:1458 Resources.items                                                        378012      0.650737  0.920938  0.000002
/home/johannes/scms/snakemake/snakemake/rules.py:982 Rule.expand_group                                                    189006      0.562903  0.914385  0.000005
/home/johannes/scms/snakemake/snakemake/utils.py:309 SequenceFormatter.format_element                                     63001       0.188914  0.912725  0.000014
/home/johannes/scms/snakemake/snakemake/dag.py:398 DAG.reason                                                             651010      0.862427  0.905699  0.000001
/home/johannes/scms/snakemake/snakemake/rules.py:362 Rule.products                                                        147021      0.580712  0.902959  0.000006
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:269 Formatter.get_field                   105001      0.329339  0.890723  0.000008
/home/johannes/scms/snakemake/snakemake/dag.py:303 DAG.check_incomplete                                                   1           0.000000  0.875491  0.875491
/home/johannes/scms/snakemake/snakemake/dag.py:428 <genexpr>                                                              1           0.133120  0.875491  0.875491
/home/johannes/scms/snakemake/snakemake/dag.py:423 DAG.incomplete_files                                                   1           0.000000  0.875491  0.875491
/home/johannes/scms/snakemake/snakemake/dag.py:1247 <listcomp>                                                            1           0.103240  0.865755  0.865755
/home/johannes/scms/snakemake/snakemake/dag.py:1137 DAG.close_remote_objects                                              1           0.093264  0.856025  0.856025
/home/johannes/scms/snakemake/snakemake/output_index.py:41 match_pattern                                                  168000      0.522531  0.808258  0.000005
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/home/johannes/scms/snakemake/snakemake/logging.py:75 ColorizingStreamHandler.decorate                                    210012      0.564176  0.775837  0.000004
/home/johannes/scms/snakemake/snakemake/persistence.py:439 Persistence.all_inputfiles                                     1           0.000000  0.759166  0.759166
/home/johannes/scms/snakemake/snakemake/dag.py:402 DAG.finished                                                           903027      0.756122  0.756122  0.000001
/home/johannes/scms/snakemake/snakemake/dag.py:245 DAG.cleanup                                                            1           0.059954  0.756119  0.756119
/home/johannes/scms/snakemake/snakemake/rules.py:1074 Rule.__hash__                                                       756017      0.755114  0.755114  0.000001
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/home/johannes/scms/snakemake/snakemake/utils.py:354 QuotedFormatter.format_field                                         63001       0.409945  0.723811  0.000011
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/home/johannes/scms/snakemake/snakemake/utils.py:326 <genexpr>                                                            84002       0.082668  0.707719  0.000008
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/home/johannes/scms/snakemake/snakemake/dag.py:991 DAG.in_until                                                           84000       0.243143  0.701025  0.000008
/home/johannes/scms/snakemake/snakemake/dag.py:1495 <lambda>                                                              882028      0.695966  0.695966  0.000001
/home/johannes/scms/snakemake/snakemake/jobs.py:1454 Reason.updated_input_run                                             63002       0.695210  0.695210  0.000011
/home/johannes/scms/snakemake/snakemake/dag.py:539 DAG.check_periodic_wildcards                                           84001       0.313714  0.692700  0.000008
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:52 normcase                            210012      0.460399  0.635206  0.000003
/home/johannes/scms/snakemake/snakemake/rules.py:358 Rule.output                                                          756047      0.633136  0.633136  0.000001
/home/johannes/scms/snakemake/snakemake/jobs.py:585 Job.unique_input                                                      147002      0.343113  0.625944  0.000004
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/home/johannes/scms/snakemake/snakemake/jobs.py:887 Job.is_local                                                          189006      0.368551  0.604636  0.000003
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/home/johannes/scms/snakemake/snakemake/rules.py:311 Rule.benchmark                                                       693035      0.583918  0.583918  0.000001
/home/johannes/scms/snakemake/snakemake/rules.py:434 Rule.apply_default_remote                                            21007       0.126579  0.562965  0.000027
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/home/johannes/scms/snakemake/snakemake/exceptions.py:153 WorkflowError.__init__                                          84001       0.301811  0.561624  0.000007
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/home/johannes/scms/snakemake/snakemake/io.py:1448 OutputFiles._take_names                                                105003      0.241004  0.537521  0.000005
/home/johannes/scms/snakemake/snakemake/io.py:887 format_match                                                            168000      0.381039  0.537117  0.000003
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/home/johannes/scms/snakemake/snakemake/dag.py:1234 DAG._ready                                                            147002      0.320780  0.463745  0.000003
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:751 set_event_loop                42002       0.152931  0.445006  0.000011
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/home/johannes/scms/snakemake/snakemake/dag.py:1034 <lambda>                                                              63002       0.156549  0.416320  0.000007
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/selectors.py:69 _SelectorMapping.__getitem__        42002       0.129302  0.384785  0.000009
/home/johannes/scms/snakemake/snakemake/workflow.py:431 Workflow.is_local                                                 252008      0.379062  0.379062  0.000002
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/home/johannes/scms/snakemake/snakemake/rules.py:1053 get_wildcard_len                                                    63001       0.213100  0.371987  0.000006
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/home/johannes/scms/snakemake/snakemake/executors/__init__.py:178 DryrunExecutor.printcache                               63002       0.219457  0.368495  0.000006
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/home/johannes/scms/snakemake/snakemake/dag.py:690 DAG.jobid                                                              84003       0.249105  0.346742  0.000004
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/home/johannes/scms/snakemake/snakemake/io.py:441 _IOFile.exists_local                                                    21001       0.069950  0.343093  0.000016
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1677 Logger.isEnabledFor        231013      0.320081  0.320081  0.000001
/home/johannes/scms/snakemake/snakemake/rules.py:651 Rule.check_wildcards                                                 63001       0.229140  0.307672  0.000005
/home/johannes/scms/snakemake/snakemake/rules.py:439 apply                                                                21007       0.093274  0.306461  0.000015
/home/johannes/scms/snakemake/snakemake/io.py:1441 OutputFiles._get_names                                                 105003      0.219694  0.296517  0.000003
/home/johannes/scms/snakemake/snakemake/io.py:1611 PeriodicityDetector.is_periodic                                        105000      0.229313  0.292505  0.000003
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/threading.py:1031 _MainThread.name                  210012      0.285587  0.285587  0.000001
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/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/socket.py:496 socket.close                          42003       0.060140  0.269108  0.000006
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/home/johannes/scms/snakemake/snakemake/dag.py:406 DAG.dynamic                                                            63002       0.186820  0.240066  0.000004
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<frozen importlib._bootstrap>:956 _find_and_load_unlocked                                                                 139/4       0.000000  0.226263  0.001628
<frozen importlib._bootstrap>:211 _call_with_frames_removed                                                               150/5       0.000000  0.226263  0.001508
<frozen importlib._bootstrap>:986 _find_and_load                                                                          140/4       0.000000  0.226263  0.001616
<frozen importlib._bootstrap>:650 _load_unlocked                                                                          135/4       0.003331  0.226263  0.001676
<frozen importlib._bootstrap_external>:777 SourceFileLoader.exec_module                                                   125/3       0.003331  0.222932  0.001783
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/home/johannes/scms/snakemake/snakemake/io.py:905 not_iterable                                                            84000       0.131511  0.187969  0.000002
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/home/johannes/scms/snakemake/snakemake/logging.py:484 setup_logger                                                       1           0.000000  0.183024  0.183024
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<string>:1 __new__                                                                                                        21175       0.046563  0.066530  0.000003
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<frozen importlib._bootstrap>:1017 _handle_fromlist                                                                       47/33       0.000000  0.053244  0.001133
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<frozen importlib._bootstrap>:890 _find_spec                                                                              138         0.003331  0.029944  0.000217
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/home/johannes/scms/snakemake/snakemake/parser.py:851 Snakefile.__next__                                                  170         0.000000  0.026620  0.000157
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<frozen importlib._bootstrap_external>:849 SourceFileLoader.get_code                                                      125         0.000000  0.023277  0.000186
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