
Clock type: CPU
Ordered by: totaltime, desc

name                                                                                                                      ncall       tsub      ttot      tavg      
/home/johannes/scms/snakemake/snakemake/__init__.py:40 snakemake                                                          1           0.000000  559.9067  559.9067
/home/johannes/scms/snakemake/snakemake/workflow.py:475 Workflow.execute                                                  1           0.000000  554.7101  554.7101
/home/johannes/scms/snakemake/snakemake/scheduler.py:392 JobScheduler.schedule                                            1           0.006651  343.8205  343.8205
/home/johannes/scms/snakemake/snakemake/scheduler.py:471 JobScheduler.run                                                 10          0.000000  343.1283  34.31283
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:123 DryrunExecutor.run_jobs                                 10          0.264454  343.1283  34.31283
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:138 DryrunExecutor.run                                      90002       0.622080  342.8639  0.003810
/home/johannes/scms/snakemake/snakemake/scheduler.py:495 JobScheduler._proceed                                            90002       22.84455  199.2608  0.002214
/home/johannes/scms/snakemake/snakemake/scheduler.py:368 JobScheduler.open_jobs                                           60004       164.2396  164.3159  0.002738
/home/johannes/scms/snakemake/snakemake/dag.py:171 DAG.init                                                               1           0.158811  156.1795  156.1795
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:149 DryrunExecutor._run                                     90002       0.535564  142.9810  0.001589
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:170 DryrunExecutor.printjob                                 90002       0.653079  133.8694  0.001487
/home/johannes/scms/snakemake/snakemake/executors/__init__.py:156 DryrunExecutor.printjob                                 90002       0.336642  132.6573  0.001474
/home/johannes/scms/snakemake/snakemake/jobs.py:909 Job.log_info                                                          90002       3.811892  132.3207  0.001470
/home/johannes/scms/snakemake/snakemake/logging.py:166 Logger.handler                                                     480010      1.243909  96.46815  0.000201
/home/johannes/scms/snakemake/snakemake/logging.py:274 Logger.text_handler                                                480010      3.987631  95.22424  0.000198
/home/johannes/scms/snakemake/snakemake/logging.py:217 Logger.job_info                                                    90002       0.284394  93.15699  0.001035
/home/johannes/scms/snakemake/snakemake/dag.py:697 DAG.update                                                             120001/1    1.878755  83.96330  0.000700
/home/johannes/scms/snakemake/snakemake/dag.py:785 DAG.update_                                                            120001/1    1.925530  83.86341  0.000699
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1424 Logger.info                300008      1.590129  76.47571  0.000255
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1553 Logger._log                300012      1.834968  74.47436  0.000248
/home/johannes/scms/snakemake/snakemake/dag.py:875 DAG.update_needrun                                                     2           3.855960  68.19529  34.09765
/home/johannes/scms/snakemake/snakemake/dag.py:1458 DAG.collect_potential_dependencies                                    90002       1.328889  49.53899  0.000550
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1579 Logger.handle              300012      1.183622  47.42460  0.000158
/home/johannes/scms/snakemake/snakemake/dag.py:1568 DAG.file2jobs                                                         120000      0.811987  46.76918  0.000390
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1633 Logger.callHandlers        300012      1.993144  45.80797  0.000153
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:937 ColorizingStreamHandler.handle  600024      4.044143  43.81483  0.000073
/home/johannes/scms/snakemake/snakemake/dag.py:1320 DAG.new_job                                                           120001      1.011392  43.18167  0.000360
/home/johannes/scms/snakemake/snakemake/dag.py:1143 DAG.postprocess                                                       1           0.006658  40.94195  40.94195
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/runners.py:8 run                            30001       0.548711  34.75721  0.001159
/home/johannes/scms/snakemake/snakemake/jobs.py:82 JobFactory.new                                                         90002       0.715190  34.55823  0.000384
/home/johannes/scms/snakemake/snakemake/jobs.py:149 Job.__init__                                                          90002       1.958291  33.67008  0.000374
/home/johannes/scms/snakemake/snakemake/io.py:225 _IOFile.wrapper                                                         780004      3.787444  30.55355  0.000039
/home/johannes/scms/snakemake/snakemake/io.py:427 _IOFile.exists                                                          690003      2.064845  29.92604  0.000043
/home/johannes/scms/snakemake/snakemake/logging.py:326 timestamp                                                          90002       0.777294  25.68679  0.000285
/home/johannes/scms/snakemake/snakemake/dag.py:1495 DAG.bfs                                                               2160074     13.30498  24.55298  0.000011
..l/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:580 _UnixSelectorEventLoop.run_until_complete  60002       0.724592  24.25513  0.000404
/home/johannes/scms/snakemake/snakemake/io.py:254 _IOFile.inventory                                                       30000       0.218559  23.06105  0.000769
/home/johannes/scms/snakemake/snakemake/io.py:120 ExistsDict.__contains__                                                 810004      2.138208  22.00817  0.000027
..s/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:557 _UnixSelectorEventLoop.run_forever  60002       0.867927  20.77330  0.000346
/home/johannes/scms/snakemake/snakemake/dag.py:199 DAG.check_directory_outputs                                            1           0.326337  20.61954  20.61954
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1538 Logger.makeRecord          300012      0.967105  20.59788  0.000069
/home/johannes/scms/snakemake/snakemake/logging.py:60 ColorizingStreamHandler.emit                                        300012      3.302678  20.50746  0.000068
/home/johannes/scms/snakemake/snakemake/io.py:1357 InputFiles.__init__                                                    630035      5.487738  19.82714  0.000031
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:284 LogRecord.__init__          300012      7.197528  19.63078  0.000065
..es/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/base_events.py:1784 _UnixSelectorEventLoop._run_once  120010      1.303375  19.01797  0.000158
/home/johannes/scms/snakemake/snakemake/jobs.py:554 Job.missing_output                                                    240000      2.775516  18.57330  0.000077
/home/johannes/scms/snakemake/snakemake/io.py:245 _IOFile.wrapper                                                         840045      2.622029  18.14334  0.000022
/home/johannes/scms/snakemake/snakemake/rules.py:690 Rule._apply_wildcards                                                300007      2.226873  16.89193  0.000056
/home/johannes/scms/snakemake/snakemake/rules.py:771 Rule.expand_input                                                    90002       0.775960  16.72401  0.000186
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:79 Handle._run                    120024      0.262852  15.98890  0.000133
/home/johannes/scms/snakemake/snakemake/dag.py:202 <setcomp>                                                              1           0.389556  15.94175  15.94175
/home/johannes/scms/snakemake/snakemake/dag.py:358 DAG.needrun_jobs                                                       900031      2.317418  14.89038  0.000017
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1174 FileHandler.emit           300012      0.840412  14.53143  0.000048
/home/johannes/scms/snakemake/snakemake/jobs.py:406 Job.shellcmd                                                          90002       0.244102  14.46681  0.000161
/home/johannes/scms/snakemake/snakemake/jobs.py:830 Job.format_wildcards                                                  30001       1.406497  14.22271  0.000474
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1058 ColorizingStreamHandler.flush  600025      3.949006  14.07221  0.000023
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1069 FileHandler.emit           300012      1.653435  13.69102  0.000046
/home/johannes/scms/snakemake/snakemake/io.py:659 _IOFile.apply_wildcards                                                 210001      1.683175  13.55810  0.000065
/home/johannes/scms/snakemake/snakemake/dag.py:898 update_needrun                                                         180004      1.507433  13.27023  0.000074
/home/johannes/scms/snakemake/snakemake/io.py:938 is_flagged                                                              2910117     7.390870  13.11239  0.000005
..johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:914 ColorizingStreamHandler.format  600024      1.304025  12.70935  0.000021
/home/johannes/scms/snakemake/snakemake/dag.py:352 DAG.jobs                                                               1080036     1.800947  12.64605  0.000012
/home/johannes/scms/snakemake/snakemake/io.py:136 IOCache.mtime_inventory                                                 1           0.000000  12.01786  12.01786
/home/johannes/scms/snakemake/snakemake/io.py:139 IOCache._mtime_inventory                                                1           0.704896  12.01454  12.01454
/home/johannes/scms/snakemake/snakemake/dag.py:884 update_output_mintime                                                  180004      0.712282  11.98522  0.000067
/home/johannes/scms/snakemake/snakemake/io.py:315 _IOFile.get_inventory_parent                                            810004      1.743413  11.91566  0.000015
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:651 Formatter.format            600024      3.220609  11.40533  0.000019
/home/johannes/scms/snakemake/snakemake/jobs.py:534 Job.output_mintime                                                    180004      0.559311  11.27294  0.000063
/home/johannes/scms/snakemake/snakemake/common.py:117 lazy_property.__get__                                               2280043     6.624034  10.98088  0.000005
/home/johannes/scms/snakemake/snakemake/logging.py:283 job_info                                                           540008      2.448341  10.35152  0.000019
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:150 dirname                            810015      5.255236  10.17224  0.000013
/home/johannes/scms/snakemake/snakemake/jobs.py:1505 Reason.__bool__                                                      630014      2.256590  9.906988  0.000016
/home/johannes/scms/snakemake/snakemake/rules.py:874 Rule.expand_output                                                   90002       0.934637  9.859925  0.000110
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:387 realpath                           90001       0.302984  9.641932  0.000107
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:372 abspath                            180016      1.155051  9.624832  0.000053
/home/johannes/scms/snakemake/snakemake/jobs.py:538 <genexpr>                                                             180004      0.687798  9.472271  0.000053
/home/johannes/scms/snakemake/snakemake/jobs.py:304 Job.resources                                                         360009      0.848390  9.156435  0.000025
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:165 Formatter.vformat                     60001       0.349973  8.683174  0.000145
/home/johannes/scms/snakemake/snakemake/utils.py:382 format                                                               30001       1.060320  8.620580  0.000287
/home/johannes/scms/snakemake/snakemake/jobs.py:673 Job.check_protected_output                                            90002       0.933475  8.576002  0.000095
/home/johannes/scms/snakemake/snakemake/rules.py:772 concretize_iofile                                                    120000      0.455751  8.443526  0.000070
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:171 Formatter._vformat                    210002/6..  2.594647  8.236492  0.000039
/home/johannes/scms/snakemake/snakemake/io.py:345 _IOFile.is_remote                                                       1800058     3.268248  8.231836  0.000005
/home/johannes/scms/snakemake/snakemake/rules.py:932 Rule.expand_resources                                                90002       1.069895  8.161206  0.000091
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/string.py:162 SequenceFormatter.format              30001       0.115660  6.921201  0.000231
/home/johannes/scms/snakemake/snakemake/dag.py:1263 DAG.finish                                                            90002       1.233639  6.567947  0.000073
/home/johannes/scms/snakemake/snakemake/jobs.py:674 <lambda>                                                              90001       0.328174  6.457312  0.000072
/home/johannes/scms/snakemake/snakemake/io.py:453 _IOFile.protected                                                       90001       0.334422  6.129138  0.000068
/home/johannes/scms/snakemake/snakemake/rules.py:875 <genexpr>                                                            180003      0.209611  5.899661  0.000033
/home/johannes/scms/snakemake/snakemake/logging.py:455 format_dict                                                        180004      2.723406  5.776942  0.000032
/home/johannes/scms/snakemake/snakemake/io.py:745 _IOFile.__hash__                                                        5850032     5.773001  5.773001  0.000001
/home/johannes/scms/snakemake/snakemake/io.py:1412 Wildcards._add_name                                                    330004      1.170414  5.741950  0.000017
/home/johannes/scms/snakemake/snakemake/io.py:187 IOFile                                                                  240010      0.558825  5.652384  0.000024
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:756 new_event_loop                30001       0.109772  5.460968  0.000182
..local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/events.py:650 _UnixDefaultEventLoopPolicy.new_event_loop  30001       0.106395  5.321372  0.000177
/home/johannes/scms/snakemake/snakemake/dag.py:1094 DAG.update_ready                                                      90003       1.459318  5.284153  0.000059
..annes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/unix_events.py:53 _UnixSelectorEventLoop.__init__  30001       0.129683  5.214977  0.000174
/home/johannes/scms/snakemake/snakemake/jobs.py:42 format_files                                                           390005      1.166933  5.213404  0.000013
/home/johannes/scms/snakemake/snakemake/io.py:201 __new__                                                                 240010      1.747657  5.093559  0.000021
..s/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/asyncio/selector_events.py:54 _UnixSelectorEventLoop.__init__  30001       0.329141  5.085294  0.000170
/home/johannes/scms/snakemake/snakemake/workflow.py:1047 Workflow.include                                                 1           0.000000  5.010315  5.010315
/home/johannes/scms/snakemake-paper-2020/resources/hello-world/Snakefile:1 <module>                                       1           0.000000  4.960397  4.960397
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:41 _get_sep                            1740079     3.206155  4.706905  0.000003
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:334 normpath                           180018      2.635268  4.675037  0.000026
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:1502 Logger.findCaller          300012      2.101304  4.616912  0.000015
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/collections/__init__.py:608 Counter.update          6           0.000000  4.593543  0.765590
/home/johannes/scms/snakemake/snakemake/dag.py:2034 DAG.stats                                                             18          0.000000  4.593543  0.255197
/home/johannes/scms/snakemake/snakemake/io.py:113 ExistsDict.__getitem__                                                  750003      1.393766  4.482719  0.000006
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:396 _joinrealpath                      90001       0.882980  4.438444  0.000049
/home/johannes/scms/snakemake/snakemake/rules.py:887 Rule.expand_log                                                      180004      0.775246  4.336655  0.000024
/home/johannes/scms/snakemake/snakemake/io.py:1421 Wildcards._set_name                                                    330004      1.797430  4.262019  0.000013
/home/johannes/scms/snakemake/snakemake/dag.py:1338 DAG.cache_job                                                         90002       0.455775  4.245966  0.000047
/home/johannes/scms/snakemake/snakemake/logging.py:229 Logger.dag_debug                                                   360003      0.857178  4.213325  0.000012
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:490 commonpath                         180000      1.890999  4.188416  0.000023
/home/johannes/scms/snakemake/snakemake/io.py:879 apply_wildcards                                                         210001      0.485700  4.069491  0.000019
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:117 splitext                           300012      1.555509  4.067772  0.000014
/home/johannes/scms/snakemake/snakemake/dag.py:391 DAG.noneedrun_finished                                                 900021      2.327077  3.938451  0.000004
..ohannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:901 ColorizingStreamHandler.release  1200051     2.699781  3.931917  0.000003
..ohannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:894 ColorizingStreamHandler.acquire  1200051     2.637148  3.889518  0.000003
/home/johannes/scms/snakemake/snakemake/output_index.py:40 OutputIndex.match                                              120000      1.471285  3.848893  0.000032
/home/johannes/scms/snakemake/snakemake/dag.py:1031 DAG.update_priority                                                   1           0.216418  3.845324  3.845324
/home/johannes/scms/snakemake/snakemake/jobs.py:273 Job.benchmark                                                         690012      1.819536  3.765815  0.000005
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:635 Formatter.formatMessage     600024      1.290603  3.765076  0.000006
/home/johannes/scms/snakemake/snakemake/io.py:1462 OutputFiles._allitems                                                  420015      1.637407  3.749672  0.000009
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:71 join                                360023      1.870910  3.641030  0.000010
/home/johannes/scms/snakemake/snakemake/jobs.py:1032 Job.products                                                         90002       0.392475  3.610675  0.000040
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/re.py:203 sub                                       210002      0.557940  3.587121  0.000017
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/logging/__init__.py:629 Formatter.usesTime          600024      1.331076  3.539562  0.000006
/home/johannes/scms/snakemake/snakemake/jobs.py:1466 Reason.__str__                                                       90002       1.383604  3.497367  0.000039
/home/johannes/scms/snakemake/snakemake/dag.py:226 <genexpr>                                                              2           0.000000  3.418119  1.709059
/home/johannes/scms/snakemake/snakemake/dag.py:219 DAG.checkpoint_jobs                                                    2           0.309537  3.418119  1.709059
/home/johannes/scms/snakemake/snakemake/dag.py:225 DAG.update_checkpoint_outputs                                          2           0.000000  3.418119  1.709059
/home/johannes/scms/snakemake/snakemake/persistence.py:150 Persistence.lock_warn_only                                     1           0.003330  3.239222  3.239222
/home/johannes/scms/snakemake/snakemake/jobs.py:259 Job.params                                                            30001       0.184622  3.239157  0.000108
/home/johannes/scms/snakemake/snakemake/persistence.py:131 Persistence.locked                                             1           0.282932  3.235892  3.235892
/home/johannes/.local/opt/miniconda3/envs/snakemake-dev/lib/python3.8/posixpath.py:140 basename                           300012      1.513369  3.225925  0.000011
/home/johannes/scms/snakemake/snakemake/dag.py:1560 DAG.rule2job                                                          1           0.000000  3.072510  3.072510
/home/johannes/scms/snakemake/snakemake/dag.py:1155 DAG.handle_pipes                                                      1           0.302952  3.066379  3.066379
/home/johannes/scms/snakemake/snakemake/rules.py:827 Rule.expand_params                                                   30001       0.451267  3.037910  0.000101
/home/johannes/scms/snakemake/snakemake/workflow.py:1202 decorate                                                         5           0.000000  2.996232  0.599246
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/home/johannes/scms/snakemake/snakemake/io.py:715 _IOFile.clone_flags                                                     210001      0.778187  2.758791  0.000013
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/home/johannes/scms/snakemake/snakemake/jobs.py:54 jobfiles                                                               2           0.173160  2.669982  1.334991
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/home/johannes/scms/snakemake/snakemake/dag.py:2037 <genexpr>                                                             90004       0.139779  2.509662  0.000028
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/home/johannes/scms/snakemake/snakemake/dag.py:918 <genexpr>                                                              60002       0.103230  2.389882  0.000040
/home/johannes/scms/snakemake/snakemake/dag.py:230 DAG.update_jobids                                                      2           0.216412  2.373695  1.186848
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/home/johannes/scms/snakemake/snakemake/dag.py:1046 DAG.update_groups                                                     1           0.196386  2.187150  2.187150
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/home/johannes/scms/snakemake/snakemake/dag.py:383 DAG.needrun                                                            2190047     1.945841  1.945841  0.000001
/home/johannes/scms/snakemake/snakemake/io.py:1081 expand                                                                 1           0.000000  1.920917  1.920917
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/home/johannes/scms/snakemake/snakemake/io.py:913 is_callable                                                             330001      1.099703  1.840747  0.000006
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/home/johannes/scms/snakemake/snakemake/rules.py:935 apply                                                                180004      1.041139  1.810245  0.000010
/home/johannes/scms/snakemake/snakemake/dag.py:1284 <listcomp>                                                            90002       0.638509  1.718401  0.000019
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/home/johannes/scms/snakemake/snakemake/dag.py:2036 <genexpr>                                                             90004       0.136495  1.681100  0.000019
/home/johannes/scms/snakemake/snakemake/io.py:922 AnnotatedString.__init__                                                210001      0.509116  1.677807  0.000008
/home/johannes/scms/snakemake/snakemake/workflow.py:791 <genexpr>                                                         90002       0.199756  1.674183  0.000019
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/home/johannes/scms/snakemake/snakemake/logging.py:320 indent                                                             540008      1.083979  1.640986  0.000003
/home/johannes/scms/snakemake/snakemake/io.py:257 _IOFile._inventory                                                      30000       0.239421  1.609508  0.000054
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/home/johannes/scms/snakemake/snakemake/io.py:1458 Resources.items                                                        540012      1.122424  1.494096  0.000003
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/home/johannes/scms/snakemake/snakemake/rules.py:982 Rule.expand_group                                                    270006      0.809117  1.300276  0.000005
/home/johannes/scms/snakemake/snakemake/dag.py:1137 DAG.close_remote_objects                                              1           0.139796  1.254846  1.254846
/home/johannes/scms/snakemake/snakemake/dag.py:1247 <listcomp>                                                            1           0.126503  1.251794  1.251794
/home/johannes/scms/snakemake/snakemake/rules.py:362 Rule.products                                                        210021      0.771832  1.244023  0.000006
/home/johannes/scms/snakemake/snakemake/dag.py:428 <genexpr>                                                              1           0.159810  1.241843  1.241843
/home/johannes/scms/snakemake/snakemake/dag.py:303 DAG.check_incomplete                                                   1           0.000000  1.241843  1.241843
/home/johannes/scms/snakemake/snakemake/dag.py:423 DAG.incomplete_files                                                   1           0.000000  1.241843  1.241843
/home/johannes/scms/snakemake/snakemake/utils.py:309 SequenceFormatter.format_element                                     90001       0.218491  1.235412  0.000014
/home/johannes/scms/snakemake/snakemake/io.py:709 _IOFile.match                                                           210001      0.575184  1.177283  0.000006
/home/johannes/scms/snakemake/snakemake/output_index.py:41 match_pattern                                                  240000      0.735167  1.170935  0.000005
/home/johannes/scms/snakemake/snakemake/dag.py:398 DAG.reason                                                             930010      1.070488  1.166148  0.000001
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/home/johannes/scms/snakemake/snakemake/dag.py:245 DAG.cleanup                                                            1           0.056521  1.114801  1.114801
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/home/johannes/scms/snakemake/snakemake/rules.py:1074 Rule.__hash__                                                       1080017     1.074838  1.074838  0.000001
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/home/johannes/scms/snakemake/snakemake/dag.py:402 DAG.finished                                                           1290027     1.049994  1.049994  0.000001
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/home/johannes/scms/snakemake/snakemake/utils.py:354 QuotedFormatter.format_field                                         90001       0.493097  1.016921  0.000011
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/home/johannes/scms/snakemake/snakemake/dag.py:1495 <lambda>                                                              1260028     0.976299  0.976299  0.000001
/home/johannes/scms/snakemake/snakemake/utils.py:326 <genexpr>                                                            120002      0.145447  0.941356  0.000008
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/home/johannes/scms/snakemake/snakemake/dag.py:539 DAG.check_periodic_wildcards                                           120001      0.419931  0.911142  0.000008
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/home/johannes/scms/snakemake/snakemake/dag.py:991 DAG.in_until                                                           120000      0.362386  0.895111  0.000007
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/home/johannes/scms/snakemake/snakemake/jobs.py:585 Job.unique_input                                                      210002      0.456306  0.885349  0.000004
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/home/johannes/scms/snakemake/snakemake/io.py:887 format_match                                                            240000      0.565496  0.818219  0.000003
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/home/johannes/scms/snakemake/snakemake/rules.py:311 Rule.benchmark                                                       990035      0.759537  0.759537  0.000001
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/home/johannes/scms/snakemake/snakemake/dag.py:1234 DAG._ready                                                            210002      0.548341  0.757246  0.000004
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/home/johannes/scms/snakemake/snakemake/dag.py:1034 <lambda>                                                              90002       0.229376  0.606033  0.000007
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/home/johannes/scms/snakemake/snakemake/rules.py:651 Rule.check_wildcards                                                 90001       0.389206  0.568891  0.000006
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/home/johannes/scms/snakemake/snakemake/workflow.py:431 Workflow.is_local                                                 360008      0.516159  0.516159  0.000001
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/home/johannes/scms/snakemake/snakemake/rules.py:1053 get_wildcard_len                                                    90001       0.325894  0.484692  0.000005
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/home/johannes/scms/snakemake/snakemake/jobs.py:255 Job.threads                                                           120003      0.320632  0.460986  0.000004
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/home/johannes/scms/snakemake/snakemake/io.py:441 _IOFile.exists_local                                                    30001       0.086559  0.447032  0.000015
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/home/johannes/scms/snakemake/snakemake/dag.py:690 DAG.jobid                                                              120003      0.332128  0.432882  0.000004
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/home/johannes/scms/snakemake/snakemake/io.py:1611 PeriodicityDetector.is_periodic                                        150000      0.275138  0.421436  0.000003
/home/johannes/scms/snakemake/snakemake/io.py:1441 OutputFiles._get_names                                                 150003      0.329272  0.416334  0.000003
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/home/johannes/scms/snakemake/snakemake/dag.py:406 DAG.dynamic                                                            90002       0.311860  0.391897  0.000004
/home/johannes/scms/snakemake/snakemake/rules.py:439 apply                                                                30007       0.109858  0.386218  0.000013
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/home/johannes/scms/snakemake/snakemake/io.py:905 not_iterable                                                            120000      0.202900  0.279427  0.000002
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<frozen importlib._bootstrap>:650 _load_unlocked                                                                          135/4       0.003329  0.232925  0.001725
<frozen importlib._bootstrap>:956 _find_and_load_unlocked                                                                 139/4       0.000000  0.232925  0.001676
<frozen importlib._bootstrap>:211 _call_with_frames_removed                                                               150/5       0.000000  0.232925  0.001553
<frozen importlib._bootstrap>:986 _find_and_load                                                                          140/4       0.000000  0.232925  0.001664
<frozen importlib._bootstrap_external>:777 SourceFileLoader.exec_module                                                   125/3       0.000000  0.229598  0.001837
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/home/johannes/scms/snakemake/snakemake/logging.py:484 setup_logger                                                       1           0.000000  0.186346  0.186346
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<string>:1 __new__                                                                                                        30175       0.049906  0.083157  0.000003
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<frozen importlib._bootstrap>:1017 _handle_fromlist                                                                       47/33       0.000000  0.053237  0.001133
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<frozen importlib._bootstrap_external>:849 SourceFileLoader.get_code                                                      125         0.006657  0.023304  0.000186
<frozen importlib._bootstrap_external>:1302 _get_spec                                                                     138         0.000000  0.023302  0.000169
<frozen importlib._bootstrap>:890 _find_spec                                                                              138         0.000000  0.023302  0.000169
<frozen importlib._bootstrap_external>:1334 find_spec                                                                     138         0.000000  0.023302  0.000169
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<frozen zipimport>:63 zipimporter.__init__                                                                                12          0.003330  0.003330  0.000278
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<string>:1 <module>                                                                                                       5           0.000000  0.000000  0.000000
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<string>:2 <module>                                                                                                       1           0.000000  0.000000  0.000000
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