oncoKB_annotate OncoKB annotator for MAF files.

Source: R/maf-oncokb-annotator.R

oncoKB_annotate OncoKB annotator for MAF files.

oncoKB_annotate(maf, cancer_types, parallelize = T)

Arguments

maf

A MAF file to be annotated.
cancer_types

Data frame with samples mapped to cancer type for accurate levels of actionability. Default is NULL.
parallelize

Should this be done in parallel. Default is TRUE

Value

OncoKb annotate MAF.

Examples

library(gnomeR)