Package: gnomeR
Title: Wrangle and analyze IMPACT and TCGA mutation data 
Version: 0.0.0.9000
Authors@R: 
    c(person(given = "Axel",
           family = "Martin",
           role = c("aut", "cre"),
           email = "axel.steph.martin@gmail.com",
           comment = c(ORCID = "YOUR-ORCID-ID")),
      person(given = "Arshi",
             family = "Arora",
             role = "aut"),
      person(given = "Karissa",
             family = "Whiting",
             role = "aut",
             comment = c(ORCID = "0000-0002-4683-1868")),   
      person(given = "Margie",
             family = "Hannum",
             role = "aut",
             comment = c(ORCID = "0000-0002-2953-0449")))
Description: Prepare raw IMPACT and TCGA mutation data for analysis. Annotate OncoKB, summarize maf files, visualize results and more. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
URL: https://github.com/AxelitoMartin/gnomeR
BugReports: https://github.com/AxelitoMartin/gnomeR/issues
RoxygenNote: 7.1.1
Depends: R (>= 3.6)
biocViews: 
    ComplexHeatmap,
    iClusterPlus,
    GenomicRanges,
    IRanges
Imports: 
    magrittr,
    dplyr,
    ggplot2,
    exact2x2,
    tibble,
    dtplyr,
    ggrepel,
    ComplexHeatmap,
    iClusterPlus,
    GenomicRanges,
    IRanges,
    cluster,
    grid,
    survminer,
    GGally,
    RColorBrewer,
    gplots,
    lattice,
    reshape2,
    stringr,
    survival,
    plotly,
    rlang,
    forcats,
    purrr,
    reticulate
Suggests: 
    knitr,
    rmarkdown,
    testthat,
    spelling,
    covr
VignetteBuilder: knitr
Language: en-US
