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Introduction Getting started Modules Macros Extending MIA

About MIA

MIA is a Fiji plugin which provides a modular framework for assembling image and object analysis pipelines. Detected objects can be transformed, filtered, measured and related. Analysis pipelines are batch-enabled by default, allowing easy processing of high-content datasets.

MIA is developed in the Wolfson Bioimaging Facility at the University of Bristol.



Installation



Getting started



Acknowledgements

The plugin makes use of a combination of plugins packaged with Fiji as well as others that can be installed via the updater.

Required plugins pre-packaged with Fiji:

Required plugins that need installing via the Fiji updater:

Plugins bundled with MIA:

A list of bundled dependencies along with their respective licenses can be found here.



Citing MIA

We hope you find MIA useful. If you've used MIA in your research, please cite it using the Zenodo DOI for that version of the plugin. Zenodo DOIs for MIA can be found here.



Note

This plugin is still in development and test coverage is currently incomplete. Please keep an eye on results and add an issue if any problems are encountered.