Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
com.atlassian.commonmark commonmark 0.12.1 jar BSD 2-Clause License
com.github.SJCross Common v1.6.16 jar GNU General Public License v3+
io.github.classgraph classgraph 4.8.54 jar The MIT License (MIT)
net.imagej imagej-legacy 0.35.0 jar Simplified BSD License
net.objecthunter exp4j 0.4.8 jar Apache License 2.0
org.apache.maven maven-model 3.0.4 jar The Apache Software License, Version 2.0
org.apache.maven.plugins maven-project-info-reports-plugin 2.9 maven-plugin Apache License, Version 2.0
org.apache.poi poi 3.16 jar The Apache Software License, Version 2.0
org.apache.poi poi-ooxml 3.16 jar The Apache Software License, Version 2.0
org.apache.xmlbeans xmlbeans 3.0.0 jar The Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
org.junit.jupiter junit-jupiter-engine 5.5.2 jar Eclipse Public License v2.0
org.junit.jupiter junit-jupiter-params 5.5.2 jar Eclipse Public License v2.0

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

GroupId ArtifactId Version Type Licenses
de.biomedical-imaging.imagej ij_ridge_detect 1.4.0 jar GPLv2
fr.inra.ijpb MorphoLibJ_ 1.4.1 jar GNU Lesser General Public License v3+
mpicbg mpicbg 1.1.1 jar GNU General Public License v3+
net.imagej imagej 2.0.0-rc-71 jar Simplified BSD License
net.imagej imagej-ops 0.43.2 jar Simplified BSD License
net.imagej imagej-ui-swing 0.22.0 jar Simplified BSD License
sc.fiji AnalyzeSkeleton_ 3.3.0 jar GNU General Public License v3+
sc.fiji Auto_Local_Threshold 1.10.0 jar GNU General Public License v3+
sc.fiji Colocalisation_Analysis 3.0.5 jar GNU General Public License v3+
sc.fiji Colour_Deconvolution 3.0.2 jar GNU General Public License v3+
sc.fiji CorrectBleach_ 2.0.2 jar GNU General Public License v3+
sc.fiji TrackMate_ 4.0.0 jar GNU General Public License v3+
sc.fiji Trainable_Segmentation 3.2.29 jar GNU General Public License v3+
sc.fiji bUnwarpJ_ 2.6.9 jar GNU General Public License v3+

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Classifier Type Licenses
antlr antlr 2.7.2 - jar -
backport-util-concurrent backport-util-concurrent 3.1 - jar Public Domain
ch.qos.logback logback-classic 1.2.3 - jar Eclipse Public License - v 1.0GNU Lesser General Public License
ch.qos.logback logback-core 1.2.3 - jar Eclipse Public License - v 1.0GNU Lesser General Public License
cisd jhdf5 14.12.6 - jar -
com.adobe.xmp xmpcore 5.1.3 - jar The BSD License
com.drewnoakes metadata-extractor 2.11.0 - jar The Apache Software License, Version 2.0
com.esotericsoftware.kryo kryo 2.24.0 - jar New BSD License
com.esotericsoftware.minlog minlog 1.2 - jar New BSD License
com.fasterxml.jackson.core jackson-annotations 2.9.6 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-core 2.9.6 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-databind 2.9.6 - jar The Apache Software License, Version 2.0
com.fifesoft autocomplete 2.6.1 - jar Modified BSD License
com.fifesoft languagesupport 2.6.0 - jar Modified BSD License
com.fifesoft rsyntaxtextarea 2.6.1 - jar Modified BSD License
com.github.ben-manes.caffeine caffeine 2.4.0 - jar Apache License, Version 2.0
com.github.sbridges.object-inspector object-inspector 0.1 - jar -
com.github.virtuald curvesapi 1.04 - jar BSD License
com.google.code.findbugs bcel-findbugs 6.0 - jar The Apache Software License, Version 2.0
com.google.code.findbugs jsr305 2.0.1 - jar The Apache Software License, Version 2.0
com.google.guava guava 21.0 - jar The Apache Software License, Version 2.0
com.google.http-client google-http-client 1.20.0 - jar The Apache Software License, Version 2.0
com.google.http-client google-http-client-xml 1.20.0 - jar The Apache Software License, Version 2.0
com.googlecode.efficient-java-matrix-library ejml 0.24 - jar LGPL
com.jgoodies jgoodies-common 1.7.0 - jar The BSD License
com.jgoodies jgoodies-forms 1.7.2 - jar The BSD License
com.mchange c3p0 0.9.5.3 - jar GNU Lesser General Public License, Version 2.1Eclipse Public License, Version 1.0
com.mchange mchange-commons-java 0.2.15 - jar GNU Lesser General Public License, Version 2.1Eclipse Public License, Version 1.0
com.miglayout miglayout 3.7.4 swing jar -
com.squareup.okhttp3 okhttp 3.7.0 - jar -
com.squareup.okio okio 1.12.0 - jar Apache 2.0
commons-beanutils commons-beanutils 1.9.3 - jar Apache License, Version 2.0
commons-chain commons-chain 1.1 - jar -
commons-codec commons-codec 1.11 - jar Apache License, Version 2.0
commons-collections commons-collections 3.2.2 - jar Apache License, Version 2.0
commons-digester commons-digester 1.8 - jar -
commons-io commons-io 2.6 - jar Apache License, Version 2.0
commons-lang commons-lang 2.6 - jar The Apache Software License, Version 2.0
commons-logging commons-logging 1.2 - jar The Apache Software License, Version 2.0
commons-validator commons-validator 1.4.0 - jar The Apache Software License, Version 2.0
dom4j dom4j 1.1 - jar -
edu.ucar cdm 4.6.13 - jar -
edu.ucar httpservices 4.6.13 - jar -
edu.ucar udunits 4.3.18 - jar -
gov.nist.math jama 1.0.3 - jar Public Domain
io.minio minio 5.0.2 - jar The Apache License, Version 2.0
io.scif scifio 0.37.3 - jar Simplified BSD License
io.scif scifio-jai-imageio 1.1.1 - jar Simplified BSD License
jitk jitk-tps 3.0.1 - jar Apache Software License, Version 2.0
joda-time joda-time 2.10.1 - jar Apache 2
log4j log4j 1.2.17 - jar The Apache Software License, Version 2.0
net.imagej ij 1.52o - jar Public domain
net.imagej ij1-patcher 0.12.9 - jar Simplified BSD License
net.imagej imagej-common 0.28.2 - jar Simplified BSD License
net.imagej imagej-deprecated 0.1.2 - jar Simplified BSD License
net.imglib2 imglib2 5.6.3 - jar Simplified BSD License
net.imglib2 imglib2-cache 1.0.0-beta-11 - jar Simplified BSD License
net.imglib2 imglib2-ij 2.0.0-beta-44 - jar Simplified BSD License
net.imglib2 imglib2-realtransform 2.2.1 - jar Simplified BSD License
net.imglib2 imglib2-roi 0.7.0 - jar Simplified BSD License
net.sf.trove4j trove4j 3.0.3 - jar GNU Lesser General Public License 2.1
net.sourceforge.jdatepicker jdatepicker 1.3.2 - jar Simplified BSD License
ome bio-formats_plugins 6.1.1 - jar GNU General Public License v2+
ome formats-api 6.1.1 - jar Simplified BSD License
ome formats-bsd 6.1.1 - jar Simplified BSD License
ome formats-gpl 6.1.1 - jar GNU General Public License v2+
ome jxrlib-all 0.2.1 - jar Simplified BSD License
ome turbojpeg 6.1.1 - jar Simplified BSD License
org.apache.commons commons-collections4 4.1 - jar Apache License, Version 2.0
org.apache.commons commons-math3 3.6.1 - jar Apache License, Version 2.0
org.apache.httpcomponents httpclient 4.0.2 - jar Apache License
org.apache.httpcomponents httpcore 4.0.1 - jar Apache License
org.apache.httpcomponents httpmime 4.5.1 - jar Apache License, Version 2.0
org.apache.maven maven-artifact 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven maven-artifact-manager 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven maven-plugin-api 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven maven-plugin-registry 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven maven-profile 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven maven-project 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven maven-repository-metadata 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven maven-settings 2.2.1 - jar The Apache Software License, Version 2.0
org.apache.maven.doxia doxia-core 1.6 - jar Apache License, Version 2.0
org.apache.maven.doxia doxia-decoration-model 1.6 - jar Apache License, Version 2.0
org.apache.maven.doxia doxia-integration-tools 1.6 - jar Apache License, Version 2.0
org.apache.maven.doxia doxia-logging-api 1.6 - jar Apache License, Version 2.0
org.apache.maven.doxia doxia-module-fml 1.6 - jar Apache License, Version 2.0
org.apache.maven.doxia doxia-module-xhtml 1.6 - jar Apache License, Version 2.0
org.apache.maven.doxia doxia-sink-api 1.6 - jar Apache License, Version 2.0
org.apache.maven.doxia doxia-site-renderer 1.6 - jar Apache License, Version 2.0
org.apache.maven.reporting maven-reporting-impl 2.3 - jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-api 1.9.2 - jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-cvs-commons 1.9.2 - jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-git-commons 1.9.2 - jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-hg 1.9.2 - jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-perforce 1.9.2 - jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-starteam 1.9.2 - jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-svn-commons 1.9.2 - jar Apache License, Version 2.0
org.apache.maven.shared maven-common-artifact-filters 1.4 - jar The Apache Software License, Version 2.0
org.apache.maven.shared maven-dependency-tree 2.2 - jar Apache License, Version 2.0
org.apache.maven.shared maven-shared-jar 1.2 - jar Apache License, Version 2.0
org.apache.maven.shared maven-shared-utils 0.6 - jar The Apache Software License, Version 2.0
org.apache.maven.wagon wagon-provider-api 2.7 - jar Apache License, Version 2.0
org.apache.poi poi-ooxml-schemas 3.16 - jar The Apache Software License, Version 2.0
org.apache.struts struts-core 1.3.8 - jar -
org.apache.struts struts-taglib 1.3.8 - jar -
org.apache.struts struts-tiles 1.3.8 - jar -
org.apache.velocity velocity 1.5 - jar -
org.apache.velocity velocity-tools 2.0 - jar The Apache Software License, Version 2.0
org.bonej boneJ-legacy-plugins 1.0.0 - jar GNU General Public License v3+
org.bonej bonej-legacy-util 1.0.0 - jar GNU General Public License v3+
org.bushe eventbus 1.4 - jar Apache License, Version 2.0
org.codehaus.plexus plexus-component-annotations 1.5.5 - jar The Apache Software License, Version 2.0
org.codehaus.plexus plexus-container-default 1.0-alpha-9-stable-1 - jar -
org.codehaus.plexus plexus-digest 1.0 - jar -
org.codehaus.plexus plexus-i18n 1.0-beta-10 - jar -
org.codehaus.plexus plexus-interpolation 1.21 - jar The Apache Software License, Version 2.0
org.codehaus.plexus plexus-utils 3.0.20 - jar The Apache Software License, Version 2.0
org.codehaus.plexus plexus-velocity 1.1.7 - jar -
org.eclipse.aether aether-util 0.9.0.M2 - jar Eclipse Public License, Version 1.0
org.javassist javassist 3.24.0-GA - jar MPL 1.1LGPL 2.1Apache License 2.0
org.jogamp.gluegen gluegen-rt 2.3.2 - jar BSD-2 LicenseBSD-3 LicenseBSD-4 License
org.jogamp.jogl jogl-all 2.3.2 - jar BSD-2 LicenseBSD-3 LicenseSGI Free Software License BApache License Version 2.0Apache License Version 1.1Ubuntu Font Licence 1.0
org.json json 20090211 - jar provided without support or warranty
org.mozilla rhino 1.7.6 - jar Mozilla Public License, Version 2.0
org.objenesis objenesis 2.1 - jar Apache 2
org.ocpsoft.prettytime prettytime 4.0.1.Final - jar Apache License
org.openmicroscopy metakit 5.3.2 - jar GNU General Public License v2+
org.openmicroscopy ome-codecs 0.2.3 - jar Simplified BSD License
org.openmicroscopy ome-common 6.0.3 - jar Simplified BSD License
org.openmicroscopy ome-jai 0.1.0 - jar Simplified BSD License
org.openmicroscopy ome-mdbtools 5.3.2 - jar GNU Lesser General Public License v2.1+
org.openmicroscopy ome-poi 5.3.3 - jar Apache License, Version 2.0
org.openmicroscopy ome-xml 6.0.1 - jar Simplified BSD License
org.openmicroscopy specification 6.0.1 - jar Simplified BSD LicenseCreative Commons Attribution 3.0 Unported License
org.perf4j perf4j 0.9.16 - jar Apache 2
org.scijava batch-processor 0.3.0 - jar Simplified BSD License
org.scijava j3dcore 1.6.0-scijava-2 - jar GPLv2 with Classpath exception
org.scijava j3dutils 1.6.0-scijava-2 - jar Simplified BSD License
org.scijava minimaven 2.2.1 - jar Simplified BSD License
org.scijava native-lib-loader 2.3.4 - jar Simplified BSD License
org.scijava parsington 1.0.4 - jar Simplified BSD License
org.scijava scijava-common 2.77.0 - jar Simplified BSD License
org.scijava scijava-search 0.6.0 - jar Simplified BSD License
org.scijava scijava-table 0.4.0 - jar Simplified BSD License
org.scijava scijava-ui-awt 0.1.6 - jar Simplified BSD License
org.scijava scijava-ui-swing 0.12.0 - jar Simplified BSD License
org.scijava script-editor 0.5.0 - jar Simplified BSD License
org.scijava scripting-java 0.4.1 - jar Simplified BSD License
org.scijava swing-checkbox-tree 1.0.2 - jar Simplified BSD License
org.scijava vecmath 1.6.0-scijava-2 - jar GPLv2 with Classpath exception
org.slf4j slf4j-api 1.7.25 - jar MIT License
oro oro 2.0.8 - jar -
sc.fiji 3D_Viewer 4.0.2 - jar GNU General Public License v3+
sc.fiji Fiji_Plugins 3.1.1 - jar GNU General Public License v2+
sc.fiji LocalThickness_ 4.0.2 - jar GNU General Public License v3+
sc.fiji Skeletonize3D_ 2.1.1 - jar GNU General Public License v3+
sc.fiji VIB-lib 2.2.0 - jar GNU General Public License v3+
sc.fiji VIB_ 3.0.2 - jar GNU General Public License v3+
sc.fiji fiji-lib 2.1.2 - jar GNU General Public License v3+
sc.fiji pal-optimization 2.0.1 - jar GNU Lesser General Public License v3+
sslext sslext 1.2-0 - jar Apache Software License, Version 1.1
woolz JWlz 1.4.0 - jar -
xerces xercesImpl 2.9.1 - jar The Apache Software License, Version 2.0
xmlunit xmlunit 1.5 - jar BSD License
xpp3 xpp3 1.1.4c - jar Indiana University Extreme! Lab Software License, vesion 1.1.1Public DomainApache Software License, version 1.1

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
ch.ethz.ganymed ganymed-ssh2 build210 jar BSD style license
com.jcraft jsch 0.1.55 jar Revised BSD
com.jcraft jsch.agentproxy.core 0.0.6 jar Revised BSD
com.jcraft jsch.agentproxy.jsch 0.0.6 jar Revised BSD
org.apache.maven.scm maven-scm-manager-plexus 1.9.2 jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-cvsexe 1.9.2 jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-cvsjava 1.9.2 jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-gitexe 1.9.2 jar Apache License, Version 2.0
org.apache.maven.scm maven-scm-provider-svnexe 1.9.2 jar Apache License, Version 2.0
org.apache.maven.wagon wagon-file 2.7 jar Apache License, Version 2.0
org.apache.maven.wagon wagon-http-lightweight 2.7 jar Apache License, Version 2.0
org.apache.maven.wagon wagon-http-shared 2.7 jar Apache License, Version 2.0
org.apache.maven.wagon wagon-ssh 2.7 jar Apache License, Version 2.0
org.apache.maven.wagon wagon-ssh-common 2.7 jar Apache License, Version 2.0
org.codehaus.plexus plexus-interactivity-api 1.0-alpha-6 jar -
org.jsoup jsoup 1.7.2 jar The MIT License
org.netbeans.lib cvsclient 20060125 jar Sun Public License

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
org.apiguardian apiguardian-api 1.1.0 jar The Apache License, Version 2.0
org.junit.jupiter junit-jupiter-api 5.5.2 jar Eclipse Public License v2.0
org.junit.platform junit-platform-commons 1.5.2 jar Eclipse Public License v2.0
org.junit.platform junit-platform-engine 1.5.2 jar Eclipse Public License v2.0
org.opentest4j opentest4j 1.2.0 jar The Apache License, Version 2.0

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

GroupId ArtifactId Version Classifier Type Licenses
com.github.jnr jffi 1.2.16 - jar The Apache Software License, Version 2.0
com.github.jnr jffi 1.2.16 native jar The Apache Software License, Version 2.0
com.github.jnr jnr-constants 0.9.9 - jar The Apache Software License, Version 2.0
com.github.jnr jnr-enxio 0.16 - jar The Apache Software License, Version 2.0
com.github.jnr jnr-netdb 1.1.6 - jar The Apache Software License, Version 2.0
com.github.jnr jnr-posix 3.0.44 - jar Common Public License - v 1.0GNU General Public License Version 2GNU Lesser General Public License Version 2.1
com.github.jnr jnr-unixsocket 0.17 - jar The Apache Software License, Version 2.0
com.github.jnr jnr-x86asm 1.0.2 - jar MIT License
com.googlecode.matrix-toolkits-java mtj 1.0.4 - jar GNU Lesser General Public License
com.headius invokebinder 1.10 - jar The Apache Software License, Version 2.0
com.headius modulator 1.0 - jar The Apache Software License, Version 2.0
com.headius options 1.4 - jar The Apache Software License, Version 2.0
com.headius unsafe-fences 1.0 - jar Apache License, Version 2.0
com.itextpdf itextpdf 5.5.13 - jar GNU Affero General Public License v3
com.jcraft jzlib 1.1.3 - jar BSD
com.martiansoftware nailgun-server 0.9.1 - jar The Apache Software License, Version 2.0
com.sun.codemodel codemodel 2.6 - jar CDDL v1.1 / GPL v2 dual license
de.erichseifert.vectorgraphics2d VectorGraphics2D 0.13 - jar GNU Library or Lesser General Public License (LGPL)
edu.emory.mathcs jtransforms 2.4 - jar -
edu.mines mines-jtk 20151125 - jar -
net.iharder base64 2.3.8 - jar Public domain
net.imagej imagej-mesh 0.7.1 - jar Simplified BSD License
net.imagej imagej-notebook 0.7.1 - jar Simplified BSD License
net.imagej imagej-plugins-batch 0.1.1 - jar Simplified BSD License
net.imagej imagej-plugins-commands 0.8.1 - jar Simplified BSD License
net.imagej imagej-plugins-tools 0.3.1 - jar Simplified BSD License
net.imagej imagej-plugins-uploader-ssh 0.3.2 - jar Simplified BSD License
net.imagej imagej-plugins-uploader-webdav 0.2.2 - jar Simplified BSD License
net.imagej imagej-scripting 0.8.2 - jar Simplified BSD License
net.imagej imagej-ui-awt 0.3.1 - jar Simplified BSD License
net.imagej imagej-updater 0.9.3 - jar Simplified BSD License
net.imglib2 imglib2-algorithm 0.11.1 - jar Simplified BSD License
net.imglib2 imglib2-algorithm-fft 0.2.0 - jar Simplified BSD License
net.imglib2 imglib2-algorithm-gpl 0.2.3 - jar GNU General Public License v2+
net.sf.jung jung-api 2.0.1 - jar The BSD License
net.sf.jung jung-graph-impl 2.0.1 - jar The BSD License
net.sourceforge.collections collections-generic 4.01 - jar Apache License V2.0
nz.ac.waikato.cms.weka weka-dev 3.9.3 - jar GNU General Public License 3
nz.ac.waikato.cms.weka.thirdparty bounce 0.18 - jar BSDAS-IS
org.apache-extras.beanshell bsh 2.0b6 - jar Apache License, Version 2.0
org.apache.commons commons-compress 1.4.1 - jar The Apache Software License, Version 2.0
org.apache.commons commons-lang3 3.8.1 - jar Apache License, Version 2.0
org.apache.commons commons-math 2.2 - jar The Apache Software License, Version 2.0
org.apache.commons commons-text 1.6 - jar Apache License, Version 2.0
org.apache.commons commons-vfs2 2.0 - jar The Apache Software License, Version 2.0
org.apache.ivy ivy 2.4.0 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-awt-util 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-constants 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-css 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-dom 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-ext 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-i18n 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-svggen 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-util 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics batik-xml 1.10 - jar The Apache Software License, Version 2.0
org.apache.xmlgraphics xmlgraphics-commons 2.3 - jar The Apache Software License, Version 2.0
org.clojure clojure 1.8.0 - jar Eclipse Public License 1.0
org.codehaus.gpars gpars 1.2.1 - jar The Apache Software License, Version 2.0
org.codehaus.groovy groovy 2.4.8 - jar The Apache Software License, Version 2.0
org.codehaus.jsr166-mirror jsr166y 1.7.0 - jar -
org.jdom jdom2 2.0.6 - jar Similar to Apache License but with the acknowledgment clause removed
org.jfree jfreechart 1.5.0 - jar GNU Lesser General Public Licence
org.jgrapht jgrapht-core 1.3.0 - jar GNU Lesser General Public License Version 2.1, February 1999Eclipse Public License (EPL) 2.0
org.jheaps jheaps 0.9 - jar Apache License, Version 2.0
org.jhotdraw jhotdraw 7.6.0 - jar -
org.joml joml 1.9.12 - jar MIT License
org.jruby dirgra 0.3 - jar EPL
org.jruby jruby-core 9.1.17.0 - jar GPL-2.0LGPL-2.1EPL-2.0
org.jruby jruby-stdlib 9.1.17.0 - jar GPL-2.0LGPL-2.1EPL-2.0
org.jruby.extras bytelist 1.0.15 - jar MIT License
org.jruby.jcodings jcodings 1.0.27 - jar MIT License
org.jruby.joni joni 2.1.15 - jar MIT License
org.knowm.xchart xchart 3.5.4 - jar The Apache Software License, Version 2.0
org.markdownj markdownj 0.3.0-1.0.2b4 - jar BSD license
org.multiverse multiverse-core 0.7.0 - jar -
org.netlib blas 0.8 - jar -
org.netlib f2jutil 0.8 - jar -
org.netlib lapack 0.8 - jar -
org.netlib netlib-java 0.9.3-renjin-patched-2 - jar -
org.netlib xerbla 0.8 - jar -
org.ojalgo ojalgo 45.1.1 - jar MIT
org.ow2.asm asm 5.0.4 - jar BSD
org.ow2.asm asm-commons 5.0.4 - jar BSD
org.ow2.asm asm-tree 5.0.4 - jar BSD
org.ow2.asm asm-util 5.0.4 - jar BSD
org.renjin datasets 0.8.1906 - jar Part of R 2.14.2
org.renjin gcc-runtime 0.8.1906 - jar -
org.renjin grDevices 0.8.1906 - jar Part of R 2.14.2
org.renjin graphics 0.8.1906 - jar Part of R 2.14.2
org.renjin methods 0.8.1906 - jar Part of R 2.14.2
org.renjin renjin-appl 0.8.1906 - jar -
org.renjin renjin-core 0.8.1906 - jar -
org.renjin renjin-gnur-runtime 0.8.1906 - jar -
org.renjin renjin-script-engine 0.8.1906 - jar -
org.renjin stats 0.8.1906 - jar Part of R 2.14.2
org.renjin utils 0.8.1906 - jar Part of R 2.14.2
org.scala-lang scala-compiler 2.12.1 - jar BSD 3-Clause
org.scala-lang scala-library 2.12.1 - jar BSD 3-Clause
org.scala-lang scala-reflect 2.12.1 - jar BSD 3-Clause
org.scala-lang.modules scala-xml_2.12 1.0.6 - jar -
org.scijava jython-shaded 2.7.1.1 - jar Jython Software License
org.scijava scijava-plugins-commands 0.2.3 - jar Simplified BSD License
org.scijava scijava-plugins-platforms 0.3.1 - jar Simplified BSD License
org.scijava scijava-plugins-text-markdown 0.1.3 - jar Simplified BSD License
org.scijava scijava-plugins-text-plain 0.1.3 - jar Simplified BSD License
org.scijava scripting-beanshell 0.3.3 - jar Simplified BSD License
org.scijava scripting-clojure 0.1.6 - jar Simplified BSD License
org.scijava scripting-groovy 0.2.7 - jar Simplified BSD License
org.scijava scripting-javascript 0.4.4 - jar Simplified BSD License
org.scijava scripting-jruby 0.3.0 - jar Simplified BSD License
org.scijava scripting-jython 0.4.2 - jar Simplified BSD License
org.scijava scripting-renjin 0.2.2 - jar GNU General Public License v2+
org.scijava scripting-scala 0.2.1 - jar Simplified BSD License
org.tinyjee.jgraphx jgraphx 3.4.1.3 - jar JGraph Ltd - 3 clause BSD license
org.tukaani xz 1.0 - jar Public Domain
sc.fiji Anisotropic_Diffusion_2D 2.0.1 - jar GNU General Public License v3+
xml-apis xml-apis-ext 1.3.04 - jar -

Project Dependency Graph

Dependency Tree

Licenses

EPL: Dirgra

GNU General Public License v2+: Bio-Formats Plugins for ImageJ, Bio-Formats library, Fiji Plugins, ImgLib2 Algorithms: GPL, Metakit, SciJava Scripting: Renjin

BSD-3 License: GlueGen Runtime, JOGL

Apache License Version 2.0: JOGL

provided without support or warranty: JSON (JavaScript Object Notation)

Eclipse Public License 1.0: clojure

The BSD License: JGoodies Common, JGoodies Forms, XMP Library for Java, jung-api, jung-graph-impl

GPL-2.0: JRuby Core, JRuby Lib Setup

BSD 2-Clause License: commonmark-java core

Apache 2: Joda-Time, Objenesis, Perf4J

BSD: ASM Commons, ASM Core, ASM Tree, ASM Util, JZlib, bounce

Similar to Apache License but with the acknowledgment clause removed: JDOM

Unknown: Default Plexus Container, JWlz, Plexus Default Interactivity Handler, Plexus I18N Component, Plexus Velocity Component, Renjin Core, Renjin GCC Runtime, Renjin GNU-R Runtime, Renjin Script Engine, The Multiverse Code (so API and implementation), antlr, blas, cdm, dom4j, f2jutil, httpservices, jhdf5, jhotdraw, jsr166y, jtransforms, lapack, mines-jtk, netlib-java, object-inspector, oro, renjin-appl, udunits, xerbla

LGPL: Efficient Java Matrix Library

GNU Lesser General Public License v3+: MorphoLibJ, pal-optimization

The MIT License: jsoup

BSD style license: Ganymed SSH2 for Java

CDDL v1.1 / GPL v2 dual license: Codemodel Core

MPL 1.1: Javassist

BSD 3-Clause: Scala Compiler, Scala Library

AS-IS: bounce

GNU General Public License v3+: 3D Viewer, Analyze Skeleton, Anisotropic Diffusion 2D, Auto Local Threshold, Coloc 2, Colour Deconvolution, Common, CorrectBleach, LocalThickness, MIA_, Skeletonize3D, TrackMate, Trainable Segmentation, VIB, VIB-lib, bUnwarpJ, boneJ-legacy-plugins, bonej-legacy-util, jars/fiji-lib.jar, jars/mpicbg.jar

GNU Lesser General Public License, Version 2.1: c3p0, mchange-commons-java

LGPL-2.1: JRuby Core, JRuby Lib Setup

Modified BSD License: LanguageSupport, autocomplete, rsyntaxtextarea

GPLv2 with Classpath exception: Java 3D Core, Java 3D Vecmath

Eclipse Public License (EPL) 2.0: JGraphT - Core

Jython Software License: jython-shaded

Indiana University Extreme! Lab Software License, vesion 1.1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Public Domain: Backport of JSR 166, JAMA, MXP1: Xml Pull Parser 3rd Edition (XPP3), XZ for Java

Apache License V2.0: larvalabs collections

Public domain: ImageJ, base64

GPLv2: Ridge Detection Plugin for ImageJ

The MIT License (MIT): ClassGraph

Apache Software License, Version 1.1: sslext

MIT: ojAlgo

BSD license: markdownj

The Apache Software License, Version 2.0: Apache Commons Logging, Apache Groovy, Apache Ivy, Apache Log4j, Apache Maven Shared Utils, Apache POI, Apache XML Graphics Commons, Commons Compress, Commons Lang, Commons Math, Commons VFS Core, Commons Validator, FindBugs-bcel, FindBugs-jsr305, GPars, Google HTTP Client Library for Java, Guava: Google Core Libraries for Java, Jackson-annotations, Jackson-core, Maven Artifact, Maven Artifact Manager, Maven Common Artifact Filters, Maven Local Settings Model, Maven Model, Maven Plugin API, Maven Plugin Registry Model, Maven Profile Model, Maven Project Builder, Maven Repository Metadata Model, Plexus :: Component Annotations, Plexus Common Utilities, Plexus Interpolation API, VelocityTools, XChart, XML extensions to the Google HTTP Client Library for Java., Xerces2 Java Parser, XmlBeans, com.drewnoakes:metadata-extractor, invokebinder, jackson-databind, jffi, jnr-constants, jnr-enxio, jnr-netdb, jnr-unixsocket, modulator, nailgun-server, options, org.apache.xmlgraphics:batik-awt-util, org.apache.xmlgraphics:batik-constants, org.apache.xmlgraphics:batik-css, org.apache.xmlgraphics:batik-dom, org.apache.xmlgraphics:batik-ext, org.apache.xmlgraphics:batik-i18n, org.apache.xmlgraphics:batik-svggen, org.apache.xmlgraphics:batik-util, org.apache.xmlgraphics:batik-xml

GNU General Public License Version 2: jnr-posix

GNU Lesser General Public License v2.1+: MDB Tools (Java port)

Apache License Version 1.1: JOGL

The Apache License, Version 2.0: minio, org.apiguardian:apiguardian-api, org.opentest4j:opentest4j

Apache 2.0: Okio

BSD-4 License: GlueGen Runtime

Revised BSD: JSch, a library to use jsch-agent-proxy with JSch, jsch-agent-proxy core library

MIT License: ByteList, JCodings, JOML, Joni, SLF4J API Module, jnr-x86asm

Mozilla Public License, Version 2.0: Mozilla Rhino

Eclipse Public License v2.0: JUnit Jupiter API, JUnit Jupiter Engine, JUnit Jupiter Params, JUnit Platform Commons, JUnit Platform Engine API

BSD-2 License: GlueGen Runtime, JOGL

New BSD License: Kryo, MinLog

Eclipse Public License, Version 1.0: Aether Utilities, c3p0, mchange-commons-java

GNU Library or Lesser General Public License (LGPL): VectorGraphics2D

BSD License: XMLUnit for Java, curvesapi

Apache License 2.0: Javassist, exp4j

GNU Lesser General Public License Version 2.1, February 1999: JGraphT - Core

Apache License, Version 2.0: Apache Commons BeanUtils, Apache Commons Codec, Apache Commons Collections, Apache Commons IO, Apache Commons Lang, Apache Commons Math, Apache Commons Text, Apache HttpClient Mime, Apache Maven Dependency Tree, Apache Maven JAR Utilities, Apache Maven Project Info Reports Plugin, Apache Maven Reporting Implementation, Apache Maven Wagon :: API, Apache Maven Wagon :: Providers :: File Provider, Apache Maven Wagon :: Providers :: HTTP Shared Library, Apache Maven Wagon :: Providers :: Lightweight HTTP Provider, Apache Maven Wagon :: Providers :: SSH Common Library, Apache Maven Wagon :: Providers :: SSH Provider, BeanShell, Caffeine cache, Doxia :: Core, Doxia :: Decoration Model, Doxia :: FML Module, Doxia :: Integration Tools, Doxia :: Logging API, Doxia :: Sink API, Doxia :: Site Renderer, Doxia :: XHTML Module, EventBus, JHeaps, Maven SCM API, Maven SCM CVS Provider - CVS Executable Impl., Maven SCM CVS Provider - CVS Java Impl., Maven SCM CVS Provider - Common library, Maven SCM Git Provider - Common library, Maven SCM Git Provider - Git Executable Impl., Maven SCM Manager for Plexus, Maven SCM Mercurial (Hg) Provider, Maven SCM Perforce Provider, Maven SCM Starteam Provider, Maven SCM Subversion Provider - Common library, Maven SCM Subversion Provider - SVN Executable Impl., OME POI, unsafe-fences

GNU Lesser General Public License Version 2.1: jnr-posix

Creative Commons Attribution 3.0 Unported License: Metadata model specification

Sun Public License: cvsclient

SGI Free Software License B: JOGL

Apache License: HttpClient, HttpCore, PrettyTime - Core

Ubuntu Font Licence 1.0: JOGL

Simplified BSD License: BSD Bio-Formats readers and writers, Batch Processor, Bio-Formats API, ImageJ, ImageJ 1.x Patcher, ImageJ Common, ImageJ Deprecated, ImageJ Legacy Bridge, ImageJ Mesh, ImageJ Notebook, ImageJ Ops, ImageJ Plugins Batch, ImageJ Plugins: Commands, ImageJ Plugins: Tools, ImageJ Plugins: Uploader: SSH, ImageJ Plugins: Uploader: WebDAV, ImageJ Scripting, ImageJ UI: AWT, ImageJ UI: Swing, ImageJ Updater, ImgLib2 Algorithms, ImgLib2 Algorithms: FFT, ImgLib2 Cache Library, ImgLib2 Core Library, ImgLib2 ImageJ, ImgLib2 ROI, ImgLib2 Real Transform, JAI Image I/O Tools, JXRLib Java Bindings, Java 3D Utils, Metadata model specification, Minimal support for Maven projects, Native Library Loader, OME Codecs, OME Common Java, OME JAI, OME XML library, Parsington: The SciJava Expression Parser, SCIFIO Core, SciJava Common, SciJava Plugins: Commands, SciJava Plugins: Platforms, SciJava Plugins: Text: Markdown, SciJava Plugins: Text: Plain, SciJava Script Editor, SciJava Scripting: BeanShell, SciJava Scripting: Clojure, SciJava Scripting: Groovy, SciJava Scripting: JRuby, SciJava Scripting: Java, SciJava Scripting: JavaScript, SciJava Scripting: Jython, SciJava Scripting: Scala, SciJava Search, SciJava Table, SciJava UI: AWT, SciJava UI: Swing, Swing Check Box Tree, jdatepicker, libjpeg-turbo Java bindings

GNU Affero General Public License v3: iText Core

GNU General Public License 3: weka-dev

JGraph Ltd - 3 clause BSD license: JGraph X

GNU Lesser General Public License: Logback Classic Module, Logback Core Module, Matrix Toolkits for Java

Common Public License - v 1.0: jnr-posix

Part of R 2.14.2: datasets, grDevices, graphics, methods, stats, utils

GNU Lesser General Public License 2.1: GNU Trove

Apache Software License, Version 2.0: JavaITK thin plate spline

LGPL 2.1: Javassist

GNU Lesser General Public Licence: JFreeChart

EPL-2.0: JRuby Core, JRuby Lib Setup

Apache Software License, version 1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Eclipse Public License - v 1.0: Logback Classic Module, Logback Core Module