Introduction
MIA is an ImageJ/Fiji plugin providing a modular framework for assembling image and object analysis pipelines. Detected objects can be transformed, filtered, measured and related.
Note
This plugin is still in development and test coverage is currently incomplete. Please keep an eye on results and add an issue if any problems are encountered.
Acknowledgements
The plugin makes use of a combination of plugins packaged with Fiji as well as others that can be installed via the updater.
Required plugins pre-packaged with Fiji:
- Auto Threshold
- bUnwarpJ
- BioFormats
- Colour Deconvolution
- Correct Bleach
- MPICBG
- TrackMate
- Weka Trainable Segmentation
Required plugins that need installing via the Fiji updater:
Plugins bundled with MIA:
A list of bundled dependencies along with their respective licenses can be found here.