Vangone A. and Bonvin A.M.J.J. “Contact-based prediction of binding affinity in protein-protein complexes”, eLife, 4, e07454 (2015). |
Xue L., Rodrigues J., Kastritis P., Bonvin A.M.J.J.*, Vangone A.*, "PRODIGY: a web-server for predicting the binding affinity in protein-protein complexes", Bioinformatics, doi:10.1093/bioinformatics/btw514. |
Protein-protein complex | ΔG (kcal mol-1) | Kd (M) |
cluster2_1 | -10.1 | 7.3e-08 |
ICs charged-charged: | 12 |
ICs charged-polar: | 15 |
ICs charged-apolar: | 26 |
ICs polar-polar: | 9 |
ICs polar-apolar: | 19 |
ICs apolar-apolar: | 25 |
%NIS charged: | 33.25 |
%NIS apolar: | 40.19 |
List of residue-residue pairs at the interface (.txt) |