{% include 'navbar.html' %} {% load static %} {% load rem_template_tags %} Gene Query results

{% if no_data|length > 0 %}

The model did not find putative REMs that are associated with the following genes:

{% for empty in no_data %} {{empty}} {% endfor %}

{% endif %} {% if invalid_list|length > 0 %}

The following gene names are not contained in the GRCh38 genome assembly version. You may want to try looking up their ensembl ID.

{% for invalid in invalid_list %} {{invalid}} {% endfor %}

{% endif %} {% if doublets_list|length > 0 %}

There are multiple ensembl IDs available for the following gene symbols. All of them are still included in your query. Click on the links to check the GeneCard if necessary.

{% for double in doublets_list %} {{double.0}}: {% for ID in double.1 %} {{ID}} {% endfor %}
{% endfor %}

{% endif %}

{% if gP_link|length > 0 %} {% else %} {% endif %} {% if data|length > 0 %} {% for cellType in cell_types_list_upper %} {% endfor %} {% endif %} {% for item in data %} {% if gP_link|length > 0 %} {% else %} {% endif %} {% if item.regressionCoefficient > 0 %} {% else %} {% endif %} {% if item.REMsPerCREM > 0 %} {% else %} {% endif %} {% if item.REMsPerCREM > 0 %} {% else %} {% endif %} {% for cellType in cell_types_list %} {% endfor %} {% endfor %}

Results based on your query for the genes: {{query_string}}
Gene ID ⓘ The row entries below will redirect you to the Ensembl entry of the respective gene	Gene symbol ⓘ Click on the IDs below to receive a table with all REMs associated to the selected gene	Gene symbol	REM ID	Chr ⓘ Click on the chr row entries below to see the region in the UCSC Genome Browser	REM start	REM end	Predicted function	Model score ⓘ Represents the importance of the REM for its associated gene over all cell types	Cluster of REMs (CREM) ID ⓘ We define REMs that overlap by at least 1 bp as cluster of REMs (CREMs) with a unique ID	Number of REMs in the CREM ⓘ REMs contained in the CREM. CREMs consist of a minimum of 2 REMs.	{{cellType}} score (n={% get_cellType_attr data.0 cellType "samplecount" %}) ⓘ Importance of a REM in a cell type-specific manner averaged over n samples	{{cellType}} DNase signal (n={% get_cellType_attr data.0 cellType "samplecount" %}) ⓘ Mean of the DNase1 signal in this cell type averaged over n samples
{{ item.geneID_id }}	{{ item.geneSymbol }}	{{ item.geneSymbol }}	{{ item.REMID }}	{{ item.chr }}	{{ item.start }}	{{ item.end }}	activating	repressing	{{ item.normModelScore\|floatformat:7 }}	{{ item.CREMID }}	No CREM	{{ item.REMsPerCREM }}	-	{% get_cellType_attr item cellType "score" %}	{% get_cellType_attr item cellType "activity" %}

{% include 'footer.html' %}