Datasetw6a_vs_wt_vs_wt.w6a_vs_wt.cls
#ago1w6a_versus_ago1gfp.w6a_vs_wt.cls
#ago1w6a_versus_ago1gfp_repos
Phenotypew6a_vs_wt.cls#ago1w6a_versus_ago1gfp_repos
Upregulated in classago1w6a
GeneSetHALLMARK_IL6_JAK_STAT3_SIGNALING
Enrichment Score (ES)0.50055385
Normalized Enrichment Score (NES)1.7687607
Nominal p-value0.0
FDR q-value4.9589295E-4
FWER p-Value0.003
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_IL6_JAK_STAT3_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TLR2NATLR2
Entrez,  Source
toll-like receptor 2714.6100.0414Yes
2CSF1NACSF1
Entrez,  Source
colony stimulating factor 1 (macrophage)1094.4870.0836Yes
3IL1R1NAIL1R1
Entrez,  Source
interleukin 1 receptor, type I1244.4100.1262Yes
4CSF2RANACSF2RA
Entrez,  Source
colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)1334.3590.1687Yes
5IL6NAIL6
Entrez,  Source
interleukin 6 (interferon, beta 2)1484.3010.2103Yes
6TNFRSF1BNATNFRSF1B
Entrez,  Source
tumor necrosis factor receptor superfamily, member 1B3423.6280.2352Yes
7CRLF2NACRLF2
Entrez,  Source
cytokine receptor-like factor 23673.5300.2687Yes
8CD38NACD38
Entrez,  Source
CD38 molecule5333.1090.2901Yes
9TNFRSF21NATNFRSF21
Entrez,  Source
tumor necrosis factor receptor superfamily, member 215393.1000.3203Yes
10CD14NACD14
Entrez,  Source
CD14 molecule5712.9980.3481Yes
11HMOX1NAHMOX1
Entrez,  Source
heme oxygenase (decycling) 16142.9230.3746Yes
12CXCL11NACXCL11
Entrez,  Source
chemokine (C-X-C motif) ligand 1111802.0560.3632Yes
13IL1R2NAIL1R2
Entrez,  Source
interleukin 1 receptor, type II12072.0320.3818Yes
14BAK1NABAK1
Entrez,  Source
BCL2-antagonist/killer 114421.8090.3865Yes
15CXCL10NACXCL10
Entrez,  Source
chemokine (C-X-C motif) ligand 1016721.6340.3898Yes
16FASNAFAS
Entrez,  Source
Fas (TNF receptor superfamily, member 6)17161.5890.4031Yes
17CD9NACD9
Entrez,  Source
CD9 molecule18471.5000.4106Yes
18TNFRSF1ANATNFRSF1A
Entrez,  Source
tumor necrosis factor receptor superfamily, member 1A19231.4600.4208Yes
19IL6STNAIL6ST
Entrez,  Source
interleukin 6 signal transducer (gp130, oncostatin M receptor)21631.3260.4205Yes
20PF4NAPF4
Entrez,  Source
platelet factor 4 (chemokine (C-X-C motif) ligand 4)21661.3240.4334Yes
21PIM1NAPIM1
Entrez,  Source
pim-1 oncogene23671.2270.4343Yes
22STAT2NASTAT2
Entrez,  Source
signal transducer and activator of transcription 2, 113kDa24121.2110.4438Yes
23IRF1NAIRF1
Entrez,  Source
interferon regulatory factor 124391.1970.4541Yes
24CBLNACBL
Entrez,  Source
Cas-Br-M (murine) ecotropic retroviral transforming sequence26581.1110.4529Yes
25CSF2NACSF2
Entrez,  Source
colony stimulating factor 2 (granulocyte-macrophage)27091.0950.4608Yes
26STAM2NASTAM2
Entrez,  Source
signal transducing adaptor molecule (SH3 domain and ITAM motif) 228751.0380.4619Yes
27IL7NAIL7
Entrez,  Source
interleukin 730590.9730.4612Yes
28SOCS1NASOCS1
Entrez,  Source
suppressor of cytokine signaling 130870.9660.4692Yes
29LTBRNALTBR
Entrez,  Source
lymphotoxin beta receptor (TNFR superfamily, member 3)31450.9500.4754Yes
30OSMRNAOSMR
Entrez,  Source
oncostatin M receptor31920.9410.4821Yes
31IRF9NA32330.9320.4890Yes
32MAP3K8NAMAP3K8
Entrez,  Source
mitogen-activated protein kinase kinase kinase 833600.8930.4908Yes
33TNFRSF12ANATNFRSF12A
Entrez,  Source
tumor necrosis factor receptor superfamily, member 12A34680.8680.4933Yes
34LEPRNALEPR
Entrez,  Source
leptin receptor34940.8580.5004Yes
35STAT1NASTAT1
Entrez,  Source
signal transducer and activator of transcription 1, 91kDa37690.8170.4931Yes
36IL12RB1NAIL12RB1
Entrez,  Source
interleukin 12 receptor, beta 138400.8010.4971Yes
37IL15RANAIL15RA
Entrez,  Source
interleukin 15 receptor, alpha39170.7820.5006Yes
38IFNAR1NAIFNAR1
Entrez,  Source
interferon (alpha, beta and omega) receptor 142510.7110.4889No
39IL10RBNAIL10RB
Entrez,  Source
interleukin 10 receptor, beta43190.6970.4921No
40IL3RANAIL3RA
Entrez,  Source
interleukin 3 receptor, alpha (low affinity)45430.6470.4860No
41CCR1NACCR1
Entrez,  Source
chemokine (C-C motif) receptor 152870.5030.4494No
42IL18R1NAIL18R1
Entrez,  Source
interleukin 18 receptor 155700.4650.4382No
43IFNGR1NAIFNGR1
Entrez,  Source
interferon gamma receptor 163710.3860.3973No
44SOCS3NASOCS3
Entrez,  Source
suppressor of cytokine signaling 364470.3740.3968No
45PTPN2NAPTPN2
Entrez,  Source
protein tyrosine phosphatase, non-receptor type 270920.2750.3635No
46JUNNAJUN
Entrez,  Source
jun oncogene71970.2580.3602No
47CXCL13NACXCL13
Entrez,  Source
chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant)73010.2410.3568No
48PLA2G2ANAPLA2G2A
Entrez,  Source
phospholipase A2, group IIA (platelets, synovial fluid)76200.1960.3410No
49ITGA4NAITGA4
Entrez,  Source
integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)76330.1960.3422No
50HAX1NAHAX1
Entrez,  Source
HCLS1 associated protein X-184150.0910.2995No
51TGFB1NATGFB1
Entrez,  Source
transforming growth factor, beta 1 (Camurati-Engelmann disease)84500.0870.2984No
52CSF2RBNACSF2RB
Entrez,  Source
colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)84560.0860.2990No
53IL2RANAIL2RA
Entrez,  Source
interleukin 2 receptor, alpha86870.0550.2867No
54REG1ANAREG1A
Entrez,  Source
regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein)91130.0090.2630No
55CNTFRNACNTFR
Entrez,  Source
ciliary neurotrophic factor receptor93390.0000.2504No
56CCL7NACCL7
Entrez,  Source
chemokine (C-C motif) ligand 793920.0000.2475No
57CD36NACD36
Entrez,  Source
CD36 molecule (thrombospondin receptor)9407-0.0000.2467No
58IFNGR2NAIFNGR2
Entrez,  Source
interferon gamma receptor 2 (interferon gamma transducer 1)9453-0.0070.2443No
59CXCL3NACXCL3
Entrez,  Source
chemokine (C-X-C motif) ligand 39722-0.0450.2298No
60STAT3NASTAT3
Entrez,  Source
signal transducer and activator of transcription 3 (acute-phase response factor)9852-0.0580.2231No
61TNFNATNF
Entrez,  Source
tumor necrosis factor (TNF superfamily, member 2)9956-0.0660.2180No
62CXCL9NACXCL9
Entrez,  Source
chemokine (C-X-C motif) ligand 910000-0.0700.2163No
63ACVR1BNAACVR1B
Entrez,  Source
activin A receptor, type IB10124-0.0790.2102No
64CD44NACD44
Entrez,  Source
CD44 molecule (Indian blood group)10782-0.1660.1751No
65PTPN1NAPTPN1
Entrez,  Source
protein tyrosine phosphatase, non-receptor type 111121-0.2150.1583No
66PIK3R5NAPIK3R5
Entrez,  Source
phosphoinositide-3-kinase, regulatory subunit 5, p10111218-0.2280.1552No
67DNTTNADNTT
Entrez,  Source
deoxynucleotidyltransferase, terminal11643-0.2880.1344No
68GRB2NAGRB2
Entrez,  Source
growth factor receptor-bound protein 212041-0.3440.1156No
69CSF3RNACSF3R
Entrez,  Source
colony stimulating factor 3 receptor (granulocyte)12554-0.4110.0910No
70ACVRL1NAACVRL1
Entrez,  Source
activin A receptor type II-like 112745-0.4440.0847No
71PTPN11NAPTPN11
Entrez,  Source
protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)13042-0.4620.0727No
72IL4RNAIL4R
Entrez,  Source
interleukin 4 receptor13336-0.5080.0614No
73INHBENAINHBE
Entrez,  Source
inhibin, beta E13359-0.5110.0652No
74IL17RBNAIL17RB
Entrez,  Source
interleukin 17 receptor B13441-0.5260.0658No
75ITGB3NAITGB3
Entrez,  Source
integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)13638-0.5650.0604No
76MYD88NAMYD88
Entrez,  Source
myeloid differentiation primary response gene (88)13793-0.5930.0577No
77TYK2NATYK2
Entrez,  Source
tyrosine kinase 214116-0.6620.0462No
78IL13RA1NAIL13RA1
Entrez,  Source
interleukin 13 receptor, alpha 115282-0.936-0.0097No
79A2MNAA2M
Entrez,  Source
alpha-2-macroglobulin15303-0.943-0.0016No
80IL2RGNAIL2RG
Entrez,  Source
interleukin 2 receptor, gamma (severe combined immunodeficiency)16106-1.217-0.0344No
81PDGFCNAPDGFC
Entrez,  Source
platelet derived growth factor C16116-1.222-0.0229No
82IL17RANAIL17RA
Entrez,  Source
interleukin 17 receptor A16159-1.242-0.0130No
83LTBNALTB
Entrez,  Source
lymphotoxin beta (TNF superfamily, member 3)16661-1.507-0.0262No
84CXCL1NACXCL1
Entrez,  Source
chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)16731-1.552-0.0147No
85IL9RNAIL9R
Entrez,  Source
interleukin 9 receptor17185-1.986-0.0205No
86IL1BNAIL1B
Entrez,  Source
interleukin 1, beta17373-2.282-0.0085No
87EBI3NAEBI3
Entrez,  Source
Epstein-Barr virus induced gene 317898-4.2650.0042No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_IL6_JAK_STAT3_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_IL6_JAK_STAT3_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_IL6_JAK_STAT3_SIGNALING