LICENSE
README.md
CONTRIBUTING.md
Makefile.PL
conda_environment_AGAT.yml
MANIFEST
uninstall_AGAT
bin/agat_sp_Prokka_inferNameFromAttributes.pl
bin/agat_sp_add_introns.pl
bin/agat_sp_add_start_and_stop.pl
bin/agat_sp_alignment_output_style.pl
bin/agat_sp_clipN_seqExtremities_and_fixCoordinates.pl
bin/agat_sp_complement_annotations.pl
bin/agat_sp_ensembl_output_style.pl
bin/agat_sp_extract_attributes.pl
bin/agat_sp_extract_sequences.pl
bin/agat_sp_filter_by_ORF_size.pl
bin/agat_sp_filter_by_locus_distance.pl
bin/agat_sp_filter_by_mrnaBlastValue.pl
bin/agat_sp_filter_incomplete_gene_coding_models.pl
bin/agat_sp_fix_cds_frame.pl
bin/agat_sp_fix_features_locations_duplicated.pl
bin/agat_sp_fix_fusion.pl
bin/agat_sp_fix_longest_ORF.pl
bin/agat_sp_fix_overlaping_genes.pl
bin/agat_sp_fix_small_exon_from_extremities.pl
bin/agat_sp_flag_short_introns.pl
bin/agat_sp_functional_statistics.pl
bin/agat_sp_keep_longest_isoform.pl
bin/agat_sp_list_short_introns.pl
bin/agat_sp_load_function_from_protein_align.pl
bin/agat_sp_manage_IDs.pl
bin/agat_sp_manage_UTRs.pl
bin/agat_sp_manage_attributes.pl
bin/agat_sp_manage_functional_annotation.pl
bin/agat_sp_manage_introns.pl
bin/agat_sp_merge_annotations.pl
bin/agat_sp_split_by_level2_feature.pl
bin/agat_sp_statistics.pl
bin/agat_sp_to_tabulated.pl
bin/agat_sp_webApollo_compliant.pl
bin/agat_sq_add_hash_tag.pl
bin/agat_sq_add_locus_tag.pl
bin/agat_sq_keep_annotation_from_fastaSeq.pl
bin/agat_sq_list_attributes.pl
bin/agat_sq_manage_ID.pl
bin/agat_sq_mask.pl
bin/agat_sq_remove_redundant_entries.pl
bin/agat_sq_repeats_analyzer.pl
bin/agat_sq_rfam_analyzer.pl
bin/agat_sq_split.pl
bin/agat_sq_stat_basic.pl
bin/agat_sp_gxf_to_gff3.pl
lib/AGAT/Omniscient.pm
lib/AGAT/OmniscientTool.pm
lib/AGAT/OmniscientI.pm
lib/AGAT/OmniscientStat.pm
lib/AGAT/OmniscientO.pm
lib/AGAT/PlotR.pm
t/gff_syntax.t
t/gff_version.t
t/scripts_run.t
t/gff_version/3_test.gff
t/gff_version/2_test.gff
t/gff_version/2a_test.gff
t/gff_version/README
t/gff_version/1_test.gff
t/gff_version/2b_test.gff
t/gff_version/1a_test.gff
t/gff_syntax/25_test.gff
t/gff_syntax/24_test.gff
t/gff_syntax/2_correct_output.gff
t/gff_syntax/11_correct_output.gff
t/gff_syntax/3_test.gff
t/gff_syntax/2_test.gff
t/gff_syntax/21_correct_output.gff
t/gff_syntax/11_test.gff
t/gff_syntax/10_test.gff
t/gff_syntax/9_test.gff
t/gff_syntax/8_test.gff
t/gff_syntax/22_correct_output.gff
t/gff_syntax/12_correct_output.gff
t/gff_syntax/1_correct_output.gff
t/gff_syntax/19_correct_output.gff
t/gff_syntax/14_correct_output.gff
t/gff_syntax/7_correct_output.gff
t/gff_syntax/29_correct_output.gff
t/gff_syntax/27_correct_output.gff
t/gff_syntax/22_test.gff
t/gff_syntax/23_test.gff
t/gff_syntax/4_test.gff
t/gff_syntax/5_test.gff
t/gff_syntax/28_test.gff
t/gff_syntax/29_test.gff
t/gff_syntax/16_test.gff
t/gff_syntax/17_test.gff
t/gff_syntax/4_correct_output.gff
t/gff_syntax/17_correct_output.gff
t/gff_syntax/README
t/gff_syntax/9_correct_output.gff
t/gff_syntax/tester.sh
t/gff_syntax/30_test.gff
t/gff_syntax/5_correct_output.gff
t/gff_syntax/16_correct_output.gff
t/gff_syntax/8_correct_output.gff
t/gff_syntax/12_test.gff
t/gff_syntax/13_test.gff
t/gff_syntax/18_correct_output.gff
t/gff_syntax/15_correct_output.gff
t/gff_syntax/6_correct_output.gff
t/gff_syntax/28_correct_output.gff
t/gff_syntax/25_correct_output.gff
t/gff_syntax/26_test.gff
t/gff_syntax/27_test.gff
t/gff_syntax/0_test.gff
t/gff_syntax/1_test.gff
t/gff_syntax/18_test.gff
t/gff_syntax/19_test.gff
t/gff_syntax/23_correct_output.gff
t/gff_syntax/15_test.gff
t/gff_syntax/14_test.gff
t/gff_syntax/21_test.gff
t/gff_syntax/20_test.gff
t/gff_syntax/7_test.gff
t/gff_syntax/6_test.gff
t/gff_syntax/31_test.gff
t/gff_syntax/31_correct_output.gff
t/gff_syntax/32_test.gff
t/gff_syntax/32_correct_output.gff
t/gff_syntax/13_correct_output.gff
t/gff_syntax/0_correct_output.gff
t/gff_syntax/3_correct_output.gff
t/gff_syntax/10_correct_output.gff
t/gff_syntax/30_correct_output.gff
t/gff_syntax/20_correct_output.gff
share/features_level3.json
share/features_level2.json
share/features_spread.json
share/features_level1.json
share/sofa_2_5_3.obo
META.yml                                 Module YAML meta-data (added by MakeMaker)
META.json                                Module JSON meta-data (added by MakeMaker)
