Display the object, by printing, plotting or whatever suits its
class. This function exists to be specialized by methods. The
default method calls showDefault.
Formal methods for show will
usually be invoked for automatic printing (see the details).
# S4 method for bcbioRNASeq show(object)
| object | Any R object |
|---|
show returns an invisible NULL.
Objects from an S4 class (a class defined by a call to
setClass) will be displayed automatically is if by a
call to show. S4 objects that occur as attributes of S3
objects will also be displayed in this form; conversely, S3 objects
encountered as slots in S4 objects will be printed using the S3
convention, as if by a call to print.
Methods defined for show will only be inherited by simple
inheritance, since otherwise the method would not receive the
complete, original object, with misleading results. See the
simpleInheritanceOnly argument to setGeneric and
the discussion in setIs for the general concept.
Updated 2019-08-07.
showMethods prints all the methods for one or more
functions.
#> bcbioRNASeq 0.3.27 #> uploadDir: /data00/draco/acidbase/packages/bcbioRNASeq/inst/extdata/bcbio #> dates(2): [bcbio] 2018-03-18; [R] 2019-09-16 #> level: genes #> caller: salmon #> organism: Mus musculus #> interestingGroups(2): treatment day #> class: RangedSummarizedExperiment #> dim: 100 6 #> metadata(27): allSamples bcbioCommandsLog ... wd yaml #> assays(7): counts aligned ... vst fpkm #> rownames(100): ENSMUSG00000000001 ENSMUSG00000000003 ... #> ENSMUSG00000062661 ENSMUSG00000074340 #> rowData names(8): broadClass description ... geneName seqCoordSystem #> colnames(6): control_rep1 control_rep2 ... fa_day7_rep2 fa_day7_rep3 #> colData names(26): averageInsertSize averageReadLength ... treatment #> x5x3Bias