Quality control — plotQC • bcbioRNASeq

Quality control

plotQC(object, ...)

# S4 method for bcbioRNASeq
plotQC(object)

Arguments

object	Object.
...	Additional arguments.

Value

ggplot.

Note

Updated 2019-08-07.

Examples

data(bcb)
plotQC(bcb)
#> Using tmm counts.
#> Applying trimmed mean of M-values (TMM) normalization.
#> Filtered zero count rows and columns:
#>   - 90 / 100 rows (90.0%)
#>   - 6 / 6 columns (100%)
#> Applying 'log2(x + 1L)' transformation.
#> Using vst counts.
#> Plotting PCA using 100 features.