bcbio RNA-seq example data set

Source: R/data.R

bcbio RNA-seq example data set

bcb

Format

An object of class bcbioRNASeq with 100 rows and 6 columns.

Examples

data(bcb)
bcb
#> bcbioRNASeq 0.3.27
#> uploadDir: /data00/draco/acidbase/packages/bcbioRNASeq/inst/extdata/bcbio
#> dates(2): [bcbio] 2018-03-18; [R] 2019-09-16
#> level: genes
#> caller: salmon
#> organism: Mus musculus
#> interestingGroups(2): treatment day
#> class: RangedSummarizedExperiment 
#> dim: 100 6 
#> metadata(27): allSamples bcbioCommandsLog ... wd yaml
#> assays(7): counts aligned ... vst fpkm
#> rownames(100): ENSMUSG00000000001 ENSMUSG00000000003 ...
#>   ENSMUSG00000062661 ENSMUSG00000074340
#> rowData names(8): broadClass description ... geneName seqCoordSystem
#> colnames(6): control_rep1 control_rep2 ... fa_day7_rep2 fa_day7_rep3
#> colData names(26): averageInsertSize averageReadLength ... treatment
#>   x5x3Bias