LICENSE
========
This work is licensed under the Creative Commons Attribution 4.0 International
License. To view a copy of this license, see the LICENSE file or visit
http://creativecommons.org/licenses/by/4.0/.

CONTENTS
========
This folder contains Quantitative Trait Loci (QTL) extracted from plant-specific
literature [1] on (wild) tomato and potato species using the QTLTableMiner++
tool (QTM) [2]. QTL data are distributed in SQLite database, CSV and RDF/Turtle
files. The latter files were generated using the OpenRefine tool [3].

QTM data & execution
--------------------

./QTM -o tomato_qtl -c config/config_tomato.properties articles/tomato.txt
./QTM -o potato_qtl -c config/config_potato.properties articles/potato.txt

.
├── articles
│   ├── potato.txt
│   ├── tomato.txt
│   └── xml
│       ├── PMC1913174.xml
│       ├── PMC2246063.xml
│       ├── PMC2271080.xml
│       ├── PMC2358939.xml
│       ├── PMC2652058.xml
│       ├── PMC2657798.xml
│       ├── PMC2676307.xml
│       ├── PMC2690854.xml
│       ├── PMC2938457.xml
│       ├── PMC3023753.xml
│       ├── PMC3037844.xml
│       ├── PMC3258389.xml
│       ├── PMC3347998.xml
│       ├── PMC3460171.xml
│       ├── PMC3464107.xml
│       ├── PMC3546430.xml
│       ├── PMC3607734.xml
│       ├── PMC3660524.xml
│       ├── PMC3852376.xml
│       ├── PMC3859326.xml
│       ├── PMC3892372.xml
│       ├── PMC4008630.xml
│       ├── PMC4034497.xml
│       ├── PMC4199688.xml
│       ├── PMC4266912.xml
│       ├── PMC4301655.xml
│       ├── PMC4321030.xml
│       ├── PMC4354307.xml
│       ├── PMC4374564.xml
│       ├── PMC4414521.xml
│       ├── PMC4498769.xml
│       ├── PMC4551535.xml
│       ├── PMC4579088.xml
│       ├── PMC4612157.xml
│       ├── PMC4632055.xml
│       ├── PMC4648990.xml
│       ├── PMC4661238.xml
│       ├── PMC4703618.xml
│       ├── PMC4726135.xml
│       ├── PMC4737080.xml
│       ├── PMC4799268.xml
│       ├── PMC4831840.xml
│       ├── PMC4855764.xml
│       ├── PMC4872001.xml
│       ├── PMC4900573.xml
│       ├── PMC4948827.xml
│       ├── PMC4969537.xml
│       ├── PMC4987366.xml
│       ├── PMC4996988.xml
│       ├── PMC4999453.xml
│       ├── PMC5145867.xml
│       ├── PMC5181584.xml
│       ├── PMC5209891.xml
│       ├── PMC5281592.xml
│       ├── PMC5315735.xml
│       ├── PMC5395597.xml
│       ├── PMC5446114.xml
│       ├── PMC5526565.xml
│       ├── PMC5528874.xml
│       ├── PMC5567664.xml
│       ├── PMC5606954.xml
│       ├── PMC5675608.xml
│       ├── PMC5785350.xml
│       ├── PMC5825101.xml
│       ├── PMC5829492.xml
│       ├── PMC5854652.xml
│       ├── PMC5854731.xml
│       ├── PMC5895667.xml
│       ├── PMC6027896.xml
│       ├── PMC6034203.xml
│       ├── PMC6034811.xml
│       └── PMC6037889.xml
├── config
│   ├── config_potato.properties
│   └── config_tomato.properties
├── LICENSE
├── output
│   ├── csv
│   │   ├── potato_qtl.csv
│   │   └── tomato_qtl.csv
│   ├── db
│   │   ├── potato_qtl.db
│   │   └── tomato_qtl.db
│   ├── other
│   │   ├── potato_qtls.openrefine_rdf_schema.json
│   │   ├── potato_qtls.openrefine.tar.gz
│   │   ├── tomato_qtls.openrefine_rdf_schema.json
│   │   └── tomato_qtls.openrefine.tar.gz
│   └── rdf
│       ├── potato_qtls.ttl.graph
│       ├── potato_qtls.ttl.gz
│       ├── tomato_qtls.ttl.graph
│       └── tomato_qtls.ttl.gz
└── README.txt

Note: Both RDF graphs use 'http://localhost:8890/' base URI.


REFERENCES
==========
[1] The Europe PMC Consortium (2015) Europe PMC: a full-text literature database
for the life sciences and platform for innovation. Nucleic Acids Research, 43,
1042–1048. doi:10.1093/nar/gku1061.

[2]  Singh, G. and Kuzniar, A. (2018) QTLTableMiner++: a tool for mining
tables in scientific articles (v1.1.0). Zenodo. doi:10.5281/zenodo.1193639.

[3] OpenRefine: Tool that Allows You to Load Data, Understand It, Clean It Up,
Reconcile It, and Augment It with Data Coming from the Web.
https://github.com/OpenRefine/OpenRefine.

