Check equality on key fields of neuron object

Check equality on key fields of neuron object

# S3 method for neuron
all.equal(target, current, tolerance = 1e-06,
  check.attributes = FALSE, fieldsToCheck = c("NumPoints",
  "StartPoint", "BranchPoints", "EndPoints", "NumSegs", "SegList", "d"),
  fieldsToCheckIfPresent = c("NeuronName", "nTrees", "SubTrees"),
  fieldsToExclude = character(), CheckSharedFieldsOnly = FALSE, ...)

Arguments

target	R object.
current	other R object, to be compared with target.
tolerance	numeric \(\ge\) 0. Differences smaller than tolerance are not reported. The default value is close to 1.5e-8.
check.attributes	logical indicating if the attributes of target and current (other than the names) should be compared.
fieldsToCheck	Which fields in the neuron are always checked. The special value of NA indicates that all fields in the neurons will be compared.
fieldsToCheckIfPresent	These fields are only checked if they are present
fieldsToExclude	Character vector of fields to exclude from check
CheckSharedFieldsOnly	Logical whether to check shared fields only (default: FALSE)
...	additional arguments passed to all.equal

See also

all.equal

Examples

x=Cell07PNs[[1]]
y=x
y$NeuronName='rhubarb'
# NOT TRUE
all.equal(x, y)
#> [1] "Component “NeuronName”: 1 string mismatch"
# TRUE
all.equal(x, y, fieldsToExclude='NeuronName')
#> [1] TRUE