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XPRESStools
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|build-status| |codecov| |docs| |pypi| |doi|

=================
About
=================
| `XPRESStools <https://github.com/XPRESSyourself/XPRESStools>`_ is a part of the `XPRESSyourself <https://github.com/XPRESSyourself/>`_ suite of sequencing tools. `XPRESStools <https://github.com/XPRESSyourself/XPRESStools>`_ is a Python toolkit for navigating and analyzing gene expression (Microarray or RNAseq) datasets. Features include the ability to import GEO-accessible datasets and metadata or your own datasets, clean, normalize, and analyze sequence data.
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| `XPRESStools <https://github.com/XPRESSyourself/XPRESStools>`_ and the `XPRESSyourself <https://github.com/XPRESSyourself/>`_ suite is developed and maintained by Jordan Berg in the `Rutter Lab <https://biochem.utah.edu/rutter/index.html>`_ @ the `University of Utah <https://www.utah.edu/>`_, along with other collaborators.

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Table of contents
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.. toctree::
   :hidden:

   self

.. toctree::
   :maxdepth: 1

   content/beginner
   content/installation
   content/general-usage
   content/getting-data
   content/normalize
   content/analysis
   content/reference-building

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License
=======
| `XPRESStools <https://github.com/XPRESSyourself/XPRESStools>`_ is freely available under a GNU General Public License (v3.0).

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Questions?
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| If you have questions, requests, or bugs to report, please use the `Github issues forum <https://github.com/XPRESSyourself/XPRESStools/issues>`_.



.. |build-status| image:: https://travis-ci.org/XPRESSyourself/XPRESStools.svg?branch=master
    :target: https://travis-ci.org/XPRESSyourself/XPRESStools
    :alt: Build Status

.. |codecov| image:: https://codecov.io/gh/XPRESSyourself/XPRESStools/XPRESStools.svg?branch=master
    :target: https://codecov.io/gh/XPRESSyourself/XPRESStools
    :alt: Code Coverage

.. |docs| image:: https://readthedocs.org/projects/xpresstools/badge/?version=latest
    :target: https://xpresstools.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status

.. |pypi| image:: https://img.shields.io/pypi/v/XPRESStools.svg
    :target: https://pypi.org/project/XPRESStools
    :alt: PyPi Status

.. |doi| image:: https://zenodo.org/badge/170940002.svg
   :target: https://zenodo.org/badge/latestdoi/170940002
   :alt: DOI Status
