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ANMPathway
ANMPathway
Find transition pathway between two protein conformations

Initial PDB
1ake_a_ca_core.pdb
Chains for initial PDB
A     1 to 214  
Final PDB
4ake_a_ca_core.pdb
Chains for final PDB
A     1 to 214  
Parameter for Initial PDB
Force constant   0.1
Cut-off  12.0
Energy offset    0.0
Step size (on cusp)  0.8
Step size (slide down)   0.04
Parameter for Final PDB
Force constant   0.1
Cut-off  12.0
Energy offset    0.0
Step size (on cusp)  0.8
Step size (slide down)   0.04
Target RMSD  0.1
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© Roux Lab 2013