# Generated by roxygen2: do not edit by hand

S3method("[",nex)
S3method(duplicated,nex)
S3method(head,nex)
S3method(na.omit,nex)
S3method(plot,nex)
S3method(print,nex)
S3method(sort,nex)
S3method(subset,nex)
S3method(summary,nex)
S3method(tail,nex)
export(collapse)
export(concat)
export(dupsum)
export(filter)
export(generate_ontology)
export(getcomments)
export(is.nex)
export(printneat)
export(printout)
export(read.nex)
export(read_ontology)
export(remove.invar)
export(searchtree)
export(traitlink)
export(write.nex)
import(ggplot2)
import(igraph)
import(stringr)
importFrom(RColorBrewer,brewer.pal)
importFrom(grDevices,colorRampPalette)
importFrom(pbmcapply,pbmclapply)
importFrom(stats,as.dist)
importFrom(stats,complete.cases)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,na.omit)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stringdist,stringdist)
importFrom(stringr,regex)
importFrom(stringr,str_extract)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_length)
importFrom(stringr,str_locate)
importFrom(stringr,str_split)
importFrom(stringr,str_trim)
importFrom(textmineR,TermDocFreq)
importFrom(tm,Corpus)
importFrom(tm,VectorSource)
importFrom(tm,content_transformer)
importFrom(tm,removeNumbers)
importFrom(tm,removeWords)
importFrom(tm,stopwords)
importFrom(tm,tm_map)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,tail)
