#!/bin/bash
echo //////////////////////////////////////////////////////////
echo Saving the output files into the output directory
echo //////////////////////////////////////////////////////////
echo ' '
if [ "$#" -lt "1" ]
then
echo ==================================================================
echo ==================================================================
echo Usage: divasave mydirectory
echo ===================================================================
echo ===================================================================
exit
else
echo ==================================================================
echo ==================================================================
echo Saving $1
echo ===================================================================
echo ===================================================================
fi
if [ -d $1 ]
then 
echo Directory $1 already exists
mkdir -p $1/output
else
echo Making new directory $1
mkdir -p $1 
echo Making directory output
mkdir -p $1/output
fi 
echo ' '
echo Saving topography files...
echo ' ' 
cp ./output/topo.grd $1/output/
cp ./output/TopoInfo.dat $1/output/
echo ' ' 
echo Saving contour files...
echo ' ' 
cp ./output/coast.cont* $1/output/
echo ' ' 
echo Saving mesh files...
echo ' ' 
cp ./output/meshvisu/fort.10 $1/output/mesh10.dat
cp ./output/meshvisu/fort.22 $1/output/mesh.dat
cp ./output/meshvisu/fort.23 $1/output/meshtopo.dat
echo ' ' 
echo Saving analysis files...
echo ' ' 
cp ./output/fieldascii.anl $1/output
cp ./output/fieldgher.anl $1/output
cp ./output/valatxyascii.anl $1/output
cp ./output/fieldatdatapoint.anl $1/output
cp ./output/ghertonetcdf/results.nc $1/output
cp ./output/ghertonetcdf/GridInfo.dat $1/output
echo ' ' 
echo Saving error files...
echo ' ' 
cp ./output/errorfieldascii.anl $1/output
cp ./output/errorfieldgher.anl $1/output
cp ./output/erroratxyascii.anl $1/output
cp ./output/erroratdatapoint.anl $1/output
echo ' ' 
echo Saving fit and GCV files...
echo ' ' 
cp ./output/paramfit.dat  $1/output
cp ./output/covariancefit.dat  $1/output
cp ./output/covariance.dat  $1/output
cp ./output/gcv.dat $1/output
cp ./output/gcvsnvar.dat $1/output
cp ./output/gcvval.dat $1/output
echo ' ' 
echo Saving Quality Control files...
echo ' ' 
cp ./output/outliers.dat $1/output
cp ./output/outliers.normalized.dat $1/output
cp ./output/outliersbis.dat $1/output
cp ./output/outliersbis.normalized.dat $1/output
cp ./output/outlierster.dat $1/output
cp ./output/outlierster.normalized.dat $1/output
echo ' '
echo ----------------------
echo Output files are saved
echo ----------------------
