
! inlist_semiconvection


&star_job
      show_log_description_at_start = .false.
      
      !create_pre_main_sequence_model = .true.
      pre_ms_T_c = 3d5

      !save_model_number = 701
      save_model_filename = '1.5_zams.mod'

      load_saved_model = .true.
      !saved_model_name = '../../data/star_data/very_low_mass_models/1MJ.mod'
      !saved_model_name = 'center_he_burn.mod'
      saved_model_name = '1.5_zams.mod'

      change_net = .true.      
      !new_net_name = 'basic.net'
      new_net_name = 'pp_and_cno_extras.net'

      log_columns_file = 'log_columns.list' 
      profile_columns_file = 'profile_columns.list' 

      !set_uniform_initial_composition = .true.
      initial_h1 = 0.73
      initial_h2 = 0
      initial_he3 = 2d-5
      initial_he4 = 0.25
      initial_zfracs = 3 ! GS98_zfracs = 3

      eos_file_prefix = 'mesa'
      kappa_file_prefix = 'gs98'
      
      change_lnPgas_flag = .true.
      new_lnPgas_flag = .true.

      !pgstar_flag = .true.


/ ! end of star_job namelist

&controls

      D_norm_kappa = 1
      D_norm_alpha = 0 
      D_norm_atol = 1d-4
      D_norm_rtol = 1d-4
      
      use_lnE_for_eps_grav = .true.


      initial_mass = 1.5
      initial_z = 0.02d0
      

      ! check for retries and backups as part of test_suite
      max_number_backups = 2
      max_number_retries = 2
         
      
         !use_Ledoux_criterion = .false.
         use_Ledoux_criterion = .true.
         nsmooth_gradL_composition_term = 1
         
         !use_gradmu_alt_for_mlt = .false.
         use_gradmu_X_for_mlt = .false.
         
         use_gradmu_alt_for_mlt = .true.
         !use_gradmu_X_for_mlt = .true.

         gradL_comp_term_logRho_switch = 3
         

         alpha_semiconvection = 1d-3
         !thermohaline_option = 'Traxler'
         
         !thermo_haline_coeff = 2  

      
      mixing_length_alpha = 1.89d0 ! based on solar model
      use_Henyey_MLT = .true.

      photostep = 100
      profile_interval = 100
      log_cnt = 10
      terminal_cnt = 10
      write_header_frequency = 10
      
      max_age = 1.6e9 !10d9
      max_years_for_timestep = 1d9
      
      max_model_number = 500
      !max_years_for_timestep = 1d-1

      xa_central_lower_limit_species(1) = 'h1' ! isotope name as defined in chem_def
      xa_central_lower_limit(1) = 0.30                    
      
      mesh_delta_coeff = 0.5
 
      !log_Teff_lower_limit = 3.815
      !log_L_upper_limit = 1
      !xa_central_lower_limit_species(1) = 'h1'
      !xa_central_lower_limit(1) = 0.25


      !report_hydro_solver_progress = .true. ! set true to see info about newton iterations
      !report_ierr = .true. ! if true, produce terminal output when have some internal error

      report_why_dt_limits = .false.
      report_all_dt_limits = .false.
      
      !show_mesh_changes = .true.
      !mesh_dump_call_number = 8242
      !okay_to_remesh = .false.

      !trace_evolve = .true.
      
      ! hydro debugging
      !hydro_numerical_jacobian = .true.
      !hydro_check_everything = .true.
      !hydro_show_rcond = .true.
      !hydro_inspectB_flag = .true.
      !hydro_save_numjac_plot_data = .true.
      !hydro_dump_call_number = 24765
      
      RGB_wind_scheme = ''
      AGB_wind_scheme = ''
      RGB_to_AGB_wind_switch = 1d-4
      Reimers_wind_eta = 0.5d0  
      Blocker_wind_eta = 0.1d0  


/ ! end of controls namelist




&pgstar
         
      ! top level controls

         !pause = .true. 
            ! if true, the code waits for user to enter a RETURN on the command line
      
      ! main window
      
         MAIN_win_flag = .true.
         !MAIN_win_flag = .false.
         
         show_TRho_Profile_with_main = .true.
      
         show_HR_TRho_with_main = .true. ! if false, use aspect ratio > 1
         MAIN_win_width = 7
         MAIN_win_aspect_ratio = 1.2 ! aspect_ratio = height/width
      
         xaxis_by = 'by_mass' !'by_radius' 
            
         show_main_win_text_info = .true.
         
         ! xaxis limits -- to override system default selections
         !main_xmin = -12 !0.4
         !main_xmax = 4.5
         
         logxq_cutoff = -12.1 ! min value when using logxm for xaxis
         !main_logL_max = 7
         !main_logL_min = 0
         
         ! control for plot showing abundances
         log_mass_frac_ymax = 0.7 ! making this > 0 helps readability
         log_mass_frac_ymin = -7.5
         num_abundance_line_labels = 5
      
         log_abund_vary = 0.1 ! don't show species if it would vary by < this in plot
      
         ! file output
         !MAIN_file_flag = .true.
         MAIN_file_dir = 'png'
         MAIN_file_prefix = 'main'
         MAIN_file_cnt = 2 ! output when mod(model_number,main_file_cnt)==0
               
               
      
      ! Abund_Pwr_Dmix window -- Abundance, Power, and Mixing Ds
      
         !Abund_Pwr_Dmix_win_flag = .true.
      
         Abund_Pwr_Dmix_win_width = 8.5
         Abund_Pwr_Dmix_win_aspect_ratio = 1.2 ! aspect_ratio = height/width
                  
         Abund_Pwr_Dmix_xaxis_by = '' ! select xaxis (same options as for main window)
            ! not used if == ''
         Abund_Pwr_Dmix_xmin = -101 ! only used if > -100
         Abund_Pwr_Dmix_xmax = -101 ! only used if > -100

         ! file output
         Abund_Pwr_Dmix_file_flag = .false.
         Abund_Pwr_Dmix_file_dir = 'pgstar_out'
         Abund_Pwr_Dmix_file_prefix = 'hr_trho'
         Abund_Pwr_Dmix_file_cnt = 5 ! output when mod(model_number,Abund_Pwr_Dmix_file_cnt)==0
         Abund_Pwr_Dmix_file_width = -1 ! negative means use same value as for window
         Abund_Pwr_Dmix_file_aspect_ratio = -1 ! negative means use same value as for window
      
      
      ! Abund_Pwr_Dmix_Dyn window -- Abundance, Power, Mixing Ds, and Dynamo
      
         !Abund_Pwr_Dmix_Dyn_win_flag = .true.
      
         Abund_Pwr_Dmix_Dyn_win_width = 8.5
         Abund_Pwr_Dmix_Dyn_win_aspect_ratio = 1.2 ! aspect_ratio = height/width
                  
         Abund_Pwr_Dmix_Dyn_xaxis_by = '' ! select xaxis (same options as for main window)
            ! not used if == ''
         Abund_Pwr_Dmix_Dyn_xmin = -101 ! only used if > -100
         Abund_Pwr_Dmix_Dyn_xmax = 3.1 !-101 ! only used if > -100

         ! file output
         Abund_Pwr_Dmix_Dyn_file_flag = .false.
         Abund_Pwr_Dmix_Dyn_file_dir = 'pgstar_out'
         Abund_Pwr_Dmix_Dyn_file_prefix = 'hr_trho'
         Abund_Pwr_Dmix_Dyn_file_cnt = 5 ! output when mod(model_number,Abund_Pwr_Dmix_Dyn_file_cnt)==0
         Abund_Pwr_Dmix_Dyn_file_width = -1 ! negative means use same value as for window
         Abund_Pwr_Dmix_Dyn_file_aspect_ratio = -1 ! negative means use same value as for window
         
      
      
      ! Abund_Power window -- Abundance and Power together
      
         !Abund_Power_win_flag = .true.
      
         Abund_Power_win_width = 7
         Abund_Power_win_aspect_ratio = 1.2 ! aspect_ratio = height/width
                  
         Abund_Power_xaxis_by = '' ! select xaxis (same options as for main window)
            ! not used if == ''
         Abund_Power_xmin = -101 ! only used if > -100
         Abund_Power_xmax = -101 ! only used if > -100
                  
         ! file output
         Abund_Power_file_flag = .false.
         Abund_Power_file_dir = 'pgstar_out'
         Abund_Power_file_prefix = 'hr_trho'
         Abund_Power_file_cnt = 5 ! output when mod(model_number,Abund_Power_file_cnt)==0
         Abund_Power_file_width = -1 ! negative means use same value as for window
         Abund_Power_file_aspect_ratio = -1 ! negative means use same value as for window
         
      
      ! Mixing_Dynamo window -- Mixing_Ds and Dynamo together
      
         !Mixing_Dynamo_win_flag = .true.
      
         Mixing_Dynamo_win_width = 7
         Mixing_Dynamo_win_aspect_ratio = 1.2 ! aspect_ratio = height/width

         Mixing_Dynamo_xaxis_by = '' ! select xaxis (same options as for main window)
            ! not used if == ''
         Mixing_Dynamo_xmin = 0.55 !-101 ! only used if > -100
         Mixing_Dynamo_xmax = 0.58 !-101 ! only used if > -100
                  
         ! file output
         Mixing_Dynamo_file_flag = .false.
         Mixing_Dynamo_file_dir = 'pgstar_out'
         Mixing_Dynamo_file_prefix = 'hr_trho'
         Mixing_Dynamo_file_cnt = 5 ! output when mod(model_number,Mixing_Dynamo_file_cnt)==0
         Mixing_Dynamo_file_width = -1 ! negative means use same value as for window
         Mixing_Dynamo_file_aspect_ratio = -1 ! negative means use same value as for window
         
               
      ! TRho Profile window -- current model in T-Rho plane
      
         TRho_Profile_win_flag = .false.

         TRho_Profile_win_width = 7.5
         TRho_Profile_win_aspect_ratio = 0.618 ! aspect_ratio = height/width
            
         show_TRho_Profile_text_info = .false.
         show_TRho_Profile_legend = .true.
         show_HR_TRho_with_TRho_Profile = .false.
         show_TRho_Profile_burn_labels = .true.
         TRho_Profile_show_logQ_limit = .true.
         !show_TRho_Profile_cross_hair = .true.
         show_TRho_Profile_mass_locs = .false.

         show_TRho_Profile_kap_regions = .false.
         show_TRho_Profile_eos_regions = .true.
         show_TRho_Profile_degeneracy_line = .true.
         show_TRho_Profile_Pgas_Prad_line = .true.
         show_TRho_Profile_burn_lines = .true.

         !show_TRho_Profile_annotation1 = .true.
         !show_TRho_Profile_annotation2 = .true.
         !show_TRho_Profile_annotation3 = .true.
      
         ! axis limits
         TRho_Profile_xmin = -10
         TRho_Profile_xmax = 10
         TRho_Profile_ymin = 3.0
         TRho_Profile_ymax = 10
         
         ! file output
         !TRho_Profile_file_flag = .true.
         TRho_Profile_file_dir = 'png'
         TRho_Profile_file_prefix = 'trho_profile'
         TRho_Profile_file_cnt = 2 ! output when mod(model_number,TRho_Profile_file_cnt)==0
      
      
      ! Profile window
      
         !Profile_win_flag = .true.

         Profile_win_width = 7
         Profile_win_aspect_ratio = 0.618 ! aspect_ratio = height/width
            
         show_Profile_legend = .false.
         Profile_legend_coord = 0.65
         Profile_legend_fjust = 0.0
         Profile_legend_disp1 = -7.5
         Profile_legend_del_disp = -1.5
         Profile_show_mass_locs = .false.
         Profile_show_decorated_line = .false.
         
         show_HR_TRho_with_Profile = .false.
         show_Profile_text_info = .false.
         Profile_text_info_xfac = 0.78 ! controls x location
         Profile_text_info_dxfac = 0.02 ! controls x spacing to value from text
         Profile_text_info_yfac = 0.95 ! controls y location of 1st line
         Profile_text_info_dyfac = -0.04 ! controls line spacing
         show_Profile_cross_hair = .false.

         show_Profile_annotation1 = .false.
         show_Profile_annotation2 = .false.
         show_Profile_annotation3 = .false.
         
         ! axis choices
            ! to get a list of axis identifiers, edit your star_job controls
               ! to set show_profile_column_numbers = .true.
            ! you can use any identifier for x or y
         Profile_xaxis_name = 'logxm'
         !Profile_xaxis_reversed = .true.
         !Profile_xmin = -12 ! only used if > -100
         !Profile_xmax = 1.2 !-101 ! only used if > -100
         
         Profile_yaxis_name = 'log_omega' !'grada'
         Profile_yaxis_reversed = .false.
         Profile_ymin = -111 !5.4 ! only used if > -100
         Profile_ymax = -111 !8.6 ! only used if > -100    
         Profile_dymin = 0.5    
         
         Profile_other_yaxis_name = 'logR'
         Profile_other_yaxis_reversed = .false.
         Profile_other_ymin = -111 ! only used if > -100
         Profile_other_ymax = -111 ! only used if > -100        
         !Profile_other_dymin = 0.05    
         
         ! file output
         !Profile_file_flag = .true.
         Profile_file_dir = 'png'
         Profile_file_prefix = 'profile'
         Profile_file_cnt = 5 ! output when mod(model_number,Profile_file_cnt)==0
      
         
         
      ! Dynamo window
      
         !Dynamo_win_flag = .true.

         Dynamo_win_width = 6
         Dynamo_win_aspect_ratio = 0.62 ! aspect_ratio = height/width
            
         show_Dynamo_cross_hair = .false.

         show_Dynamo_annotation1 = .false.
         show_Dynamo_annotation2 = .false.
         show_Dynamo_annotation3 = .false.
         
         Dynamo_xaxis_by = 'by_mass' ! same choices as for main window xaxis_by
         Dynamo_xmin = -101 ! only used if > -100
         Dynamo_xmax = -101 ! only used if > -100
         
         Dynamo_ymin_left = -101 ! only used if > -100
         Dynamo_ymax_left = -101 ! only used if > -100        
         Dynamo_dymin_left = -101 ! only used if > -100 
         
         Dynamo_ymin_right = -101 ! only used if > -100
         Dynamo_ymax_right = -101 ! only used if > -100        
         Dynamo_dymin_right = -101 ! only used if > -100 
         
         ! file output
         Dynamo_file_flag = .false.
         Dynamo_file_dir = 'png'
         Dynamo_file_prefix = 'profile'
         Dynamo_file_cnt = 5 ! output when mod(model_number,Dynamo_file_cnt)==0
         Dynamo_file_width = -1 ! negative means use same value as for window
         Dynamo_file_aspect_ratio = -1 ! negative means use same value as for window
      
         
         
      ! Mixing_Ds window
      
         Mixing_Ds_win_flag = .true.

         Mixing_Ds_win_width = 6
         Mixing_Ds_win_aspect_ratio = 0.62 ! aspect_ratio = height/width
            
         show_Mixing_Ds_cross_hair = .false.

         show_Mixing_Ds_annotation1 = .false.
         show_Mixing_Ds_annotation2 = .false.
         show_Mixing_Ds_annotation3 = .false.
         
         Mixing_Ds_xaxis_by = 'by_mass' ! same choices as for main window xaxis_by
         Mixing_Ds_xmin = 0 !-101 ! only used if > -100
         Mixing_Ds_xmax = 0.25 !-101 ! only used if > -100
         
         Mixing_Ds_ymin = -101 ! only used if > -100
         Mixing_Ds_ymax = -101 ! only used if > -100        
         Mixing_Ds_dymin = -101 ! only used if > -100
         
         ! file output
         !Mixing_Ds_file_flag = .true.
         Mixing_Ds_file_dir = 'png'
         Mixing_Ds_file_prefix = 'mixing_Ds'
         Mixing_Ds_file_cnt = 2 ! output when mod(model_number,Mixing_Ds_file_cnt)==0
         Mixing_Ds_file_width = -1 ! negative means use same value as for window
         Mixing_Ds_file_aspect_ratio = -1 ! negative means use same value as for window
      
      
      ! Power window
      
         Power_win_flag = .false.
      
         Power_win_width = 8.5
         Power_win_aspect_ratio = 0.618 ! aspect_ratio = height/width
      
         Power_xaxis_by = 'by_mass'
         
         ! power xaxis limits -- to override system default selections
         Power_xmin = -101 ! only used if > -100
         Power_xmax = -101 ! only used if > -100
         
         ! power yaxis limits -- to override system default selections
         Power_ymin = -101 ! only used if > -100
         Power_ymax = -101 ! only used if > -100

         show_Power_cross_hair = .false.
         
         ! file output
         Power_file_flag = .false.
         Power_file_dir = 'png'
         Power_file_prefix = 'power'
         Power_file_cnt = 5 ! output when mod(model_number,Power_file_cnt)==0
         Power_file_width = -1 ! negative means use same value as for window
         Power_file_aspect_ratio = -1 ! negative means use same value as for window
         
         
      ! Abundance window
      
         Abundance_win_flag = .false.
      
         Abundance_win_width = 8.5
         Abundance_win_aspect_ratio = 0.618 ! aspect_ratio = height/width
      
         Abundance_xaxis_by = 'by_mass' ! select xaxis
         
         ! power xaxis limits -- to override system default selections
         Abundance_xmin = -101 ! only used if > -100
         Abundance_xmax = -101 ! only used if > -100
         
         ! power yaxis limits -- to override system default selections
         Abundance_log_mass_frac_min = 1 ! only used if < 0
         Abundance_log_mass_frac_max = 1 ! only used if < 0

         show_Abundance_cross_hair = .false.
         
         ! file output
         Abundance_file_flag = .false.
         Abundance_file_dir = 'png'
         Abundance_file_prefix = 'abund'
         Abundance_file_cnt = 5 ! output when mod(model_number,Abundance_file_cnt)==0
         Abundance_file_width = -1 ! negative means use same value as for window
         Abundance_file_aspect_ratio = -1 ! negative means use same value as for window
         
         
         

         
      
      ! Convection window -- history of convection and more.
      
         !CONV_win_flag = .true.
      
         CONV_win_width = 7
         CONV_win_aspect_ratio = 0.62 ! aspect_ratio = height/width
      
         ! axis limits
         CONV_xmax = -1 ! step number.  negative means use default.
         CONV_xmin = -1 ! step number.  negative means use default.
         CONV_max_width = 0 ! only used if > 0.  causes xmin to move with xmax.
         CONV_mmax = -1 ! (Msun units) negative means use start initial mass
         CONV_mmin = 0.0 ! (Msun units)
         CONV_lgLmax = -101 ! only used if > -100; (L in Lsun units)
         CONV_lgLmin = -101 ! only used if > -100; (L in Lsun units)

         CONV_show_burn = .true.
         CONV_show_mixing = .true.
         CONV_show_log_radius = .true.
         CONV_show_luminosities = .true.
         CONV_show_mass_boundaries = .true.

         show_CONV_annotation1 = .false.
         show_CONV_annotation2 = .false.
         show_CONV_annotation3 = .false.
         
         ! file output
         CONV_file_flag = .false.
         CONV_file_dir = 'png'
         CONV_file_prefix = 'conv'
         CONV_file_cnt = 5 ! output when mod(model_number,CONV_file_cnt)==0
         CONV_file_width = -1 ! negative means use same value as for window
         CONV_file_aspect_ratio = -1 ! negative means use same value as for window
      
      
         
         
      ! Surface History window
      
         !Surf_Hist_win_flag = .true.
      
         Surf_Hist_win_width = 6.5
         Surf_Hist_win_aspect_ratio = 1.2 ! aspect_ratio = height/width
      
         ! axis limits
         Surf_Hist_xmax = -1 ! step number.  negative means use default.
         Surf_Hist_xmin = -1 ! step number.  negative means use default.
         Surf_Hist_max_width = 0 ! only used if > 0.  causes xmin to move with xmax.
         
         ! abundance limits
         Surf_Hist_mass_frac_min = 0
         Surf_Hist_mass_frac_max = 1.1 ! > 0 helps legibility

         show_Surf_Hist_annotation1 = .false.
         show_Surf_Hist_annotation2 = .false.
         show_Surf_Hist_annotation3 = .false.
         
         ! file output
         Surf_Hist_file_flag = .false.
         Surf_Hist_file_dir = 'png'
         Surf_Hist_file_prefix = 'conv'
         Surf_Hist_file_cnt = 5 ! output when mod(model_number,Surf_Hist_file_cnt)==0
         Surf_Hist_file_width = -1 ! negative means use same value as for window
         Surf_Hist_file_aspect_ratio = -1 ! negative means use same value as for window
      
         

/ ! end of pgstar namelist
