A microbiome workflow package using phyloseq for data import, metacoder for data analysis, and ggplot2 for data visualization.
The goal of this package is to enhance the use of the metacoder package by
providing tools that mimic the phyloseq package. The only difference being that
the main data object is a taxmap object instead of a phyloseq object.
Below are some links to helpful R package used, while developing this package.
The MicrobiomeR_Workflow and MicrobiomeR_Formats help sections are also useful for understanding the package.