GBIF registry data via OAI-PMH
gbif_oai_identify(...) gbif_oai_list_identifiers(prefix = "oai_dc", from = NULL, until = NULL, set = NULL, token = NULL, as = "df", ...) gbif_oai_list_records(prefix = "oai_dc", from = NULL, until = NULL, set = NULL, token = NULL, as = "df", ...) gbif_oai_list_metadataformats(id = NULL, ...) gbif_oai_list_sets(token = NULL, as = "df", ...) gbif_oai_get_records(ids, prefix = "oai_dc", as = "parsed", ...)
... | Curl options passed on to |
---|---|
prefix | (character) A string to specify the metadata format in OAI-PMH
requests issued to the repository. The default ( |
from | (character) string giving datestamp to be used as lower bound for datestamp-based selective harvesting (i.e., only harvest records with datestamps in the given range). Dates and times must be encoded using ISO 8601. The trailing Z must be used when including time. OAI-PMH implies UTC for data/time specifications. |
until | (character) Datestamp to be used as an upper bound, for datestamp-based selective harvesting (i.e., only harvest records with datestamps in the given range). |
set | (character) A set to be used for selective harvesting (i.e., only harvest records in the given set). |
token | (character) a token previously provided by the server to resume a request where it last left off. 50 is max number of records returned. We will loop for you internally to get all the records you asked for. |
as | (character) What to return. One of "df" (for data.frame;
default), "list" (get a list), or "raw" (raw text). For
|
id, ids | (character) The OAI-PMH identifier for the record. Optional. |
raw text, list or data.frame, depending on requested output via
as
parameter
These functions only work with GBIF registry data, and do so via the OAI-PMH protocol (https://www.openarchives.org/OAI/openarchivesprotocol.html)
# NOT RUN { gbif_oai_identify() today <- format(Sys.Date(), "%Y-%m-%d") gbif_oai_list_identifiers(from = today) gbif_oai_list_identifiers(set = "country:NL") gbif_oai_list_records(from = today) gbif_oai_list_records(set = "country:NL") gbif_oai_list_metadataformats() gbif_oai_list_metadataformats(id = "9c4e36c1-d3f9-49ce-8ec1-8c434fa9e6eb") gbif_oai_list_sets() gbif_oai_list_sets(as = "list") gbif_oai_get_records("9c4e36c1-d3f9-49ce-8ec1-8c434fa9e6eb") ids <- c("9c4e36c1-d3f9-49ce-8ec1-8c434fa9e6eb", "e0f1bb8a-2d81-4b2a-9194-d92848d3b82e") gbif_oai_get_records(ids) # }