 README | README for the FVCOM preprocessing toolbox |
| add_coriolis | Generate latitude used for FVCOM Coriolis file |
| add_obc_nodes_graphic | Add a set of obc nodes comprising a single obc boundary to Mesh structure |
| add_obc_nodes_list | Add a set of obc nodes comprising a single obc boundary to Mesh structure |
| add_river_nodes_graphic | Add a set of river nodes comprising a single river to Mesh structure |
| add_river_nodes_list | Add a set of river nodes comprising a single river to Mesh structure |
| add_sigma_forDT | ! this program adds sigma levels/layers and shifted layers to a netcdf file |
| add_sponge_nodes | Add a set of sponge nodes comprising a single sponge layer to Mesh structure |
| add_sponge_nodes_list | Add a set of sponge nodes comprising a single sponge layer to Mesh structure |
| add_stations_list | Add a set of stations at which FVCOM will output time series. |
| add_var_FVCOM_river | add time dependent scalar variable to a Riverfile |
| add_weights_FVCOM_nested_forcing | Creates an FVCOM nesting file. |
| calc_sponge_radius | Calculate a variable sponge radius based on distance to the boundary |
| change_shallow_bathy | Deepens shallow nodes by setting a minimum depth and making nodes that |
| create_nesting_nodes | create a list of the nesting boundary nodes |
| elems2nodes | Transfer a field from elements to vertices |
| estimate_ts | Estimate time step at each node |
| extract_mesoscale | Load mesoscale operational POLCOMS meteorlogical input data and convert |
| find_nearest_pt | Find nearest point in Mesh structure to (x,y) |
| find_nesting_region | Creates a nesting structure array for direct/indirect or weighted nesting |
| fix_river_nodes | Takes the automatically identified river node positions generated by |
| gen_semistructured_mesh | Generate a semistructured mesh |
| gen_unstructured_mesh | function gen_unstructured_mesh(lx,ly,res,cornermod) |
| get_AMM | Extract boundary forcing information from NOC Operational Tide Model |
| get_CFS_forcing | Get the required parameters from CFSv2 reanalysis products to force |
| get_EA_river_climatology | Read river temperature climatologies from the Environment Agency river |
| get_EHYPE_rivers | Extract river discharges from the supplied river positions for the FVCOM |
| get_ERA_forcing | Reads in ERA-20C netCDF files and outputs a struct containing the |
| get_FVCOM_rivers | Extract river discharges from the supplied river positions for the FVCOM |
| get_HYCOM_forcing | Get mean flow, temperature, salinity, surface elevation and denstiy data |
| get_HYCOM_tsobc | Read temperature, salinity, u and v data from the HYCOM model output |
| get_MetUM_pp | Get the required parameters from the Met Office Unified Model (TM) |
| get_NAE2_forcing | Get the required parameters from NAE2 data to force FVCOM (through |
| get_NCEP_forcing | Get the required parameters from NCEP products to force FVCOM (through |
| get_NEMO_rivers | Extract river data from the supplied river positions for the FVCOM |
| get_POLCOMS_meanflow | Read mean flow from the PML POLCOMS-ERSEM NetCDF AMM model output files |
| get_POLCOMS_netCDF | Read temperature and salinity from NetCDF model output files and |
| get_POLCOMS_river_discharge | Parse the POLCOMS rivers data file. |
| get_POLCOMS_river_positions | Parse the POLCOMS rivers data file. |
| get_POLCOMS_sigma | Extract bathymetry and sigma layer information from NOC Operation Tide |
| get_POLCOMS_tsobc | Read temperature and salinity from the PML POLCOMS-ERSEM NetCDF model |
| get_POLCOMS_tsobc_NOCL | Extract temperature and salinity boundary forcing information from NOC |
| get_POLCOMS_tsobc_gcoms | Read temperature and salinity from the PML POLCOMS-ERSEM NetCDF model |
| get_POLCOMS_tsrestart_NOCL | Extract temperature and salinity forcing information from NOC Operational |
| get_POLPRED_spectide | Extract tidal harmonic phases and amplitudes from POLPRED ASCII files. |
| get_cs3x | Extract boundary forcing information from NOC Operational Surge Model |
| get_zeta_xtide | Extract an elevation time series from a location using Xtide |
| hybrid_coordinate | Create a hybrid vertical coordinates file. |
| inCell | Find cell in mesh Mobj containing point (xpt,ypt) |
| init_lag | Write online Lagrangian initial conditions file. |
| interp_HYCOM2FVCOM | Use an FVCOM restart file to seed a model run with spatially varying |
| interp_NEMO2FVCOM | Use an FVCOM restart file to seed a model run with spatially varying |
| interp_POLCOMS2FVCOM | Use an FVCOM restart file to seed a model run with spatially varying |
| interp_coarse_to_obc | Read an arbitrary 4D field (x, y, z, time) from the coarse struct and |
| interp_sst_assimilation | Interpolate SST values to a given FVCOM mesh object. |
| make_blank_mesh | Make a blank mesh object with default params |
| make_default_nml | Generate a model namelist with the default values from FVCOM. |
| make_model_nml_generic | script to create the model run namelist |
| modify_FVCOM_nested_forcing | Creates an FVCOM nesting file. |
| nodes2elems | Transfer a field from vertices to elements |
| plot_field | Plot the mesh, user defined field, open boundary nodes, and river points |
| read_ERA_wind | Reads in ERA Interim files and outputs a struct containing the requested |
| read_MetUM_forcing | Read Met Office Unified Model (TM) (hereafter MetUM) netCDF files and |
| read_NCEP_wind | Reads in two NCEP wind vector files (U and V) and outputs four arrays of |
| read_admesh_mesh | Read admesh mesh files (version 2.2) into MATLAB mesh object. |
| read_fabm_variables | For a given configuration, read the ersem variables required to run the |
| read_fvcom_bath | Read fvcom bathymetry file |
| read_fvcom_obc | Read fvcom open boundary file |
| read_gmsh_mesh | Read gmsh mesh files (version 2.2) into MATLAB mesh object. |
| read_grid_mesh | Read .grid mesh files into Matlab mesh object |
| read_sigma | Read an FVCOM sigma layers file and output z values into Mobj. |
| read_sms_map | Reads a .map file from SMS |
| read_sms_mesh | Read sms mesh files into Matlab mesh object. |
| set_elevtide | Setup surface elevation tides on the open boundary and dump an |
| set_elevtide_tmd | Generate the required fields within Mobj for time series elevation |
| set_spectide | Setup spectral tides on the open boundary and dump a spectral file |
| setup_metrics | Setup metrics for mesh object Mesh |
| smoothfield | Smooth a vertex-based field using averages |
| smoothfield2 | Smooth a vertex-based field using minimum value of surrounding nodes |
| truncfield | Smooth a vertex-based field using averages |
| wrf2fvcom | Performs minor fixes to the output of wrf_to_fvcom in the FVCOM source |
| wrf2fvcom_U10V10 | function wrf2fvcom_U10V10(wrf_file,fvcom_grid_file,fvcom_forcing_file,infos) |
| write_FVCOM_TT | Dump tidal turbine parameters to FVCOM forcing file. |
| write_FVCOM_bath | Write bathymetry to FVCOM format bathymetry file |
| write_FVCOM_bedflag | Write spatially-variable flag (bedflag) to FVCOM forcing file |
| write_FVCOM_cor | Write coriolis to FVCOM format coriolis file |
| write_FVCOM_elevtide | Write an FVCOM surface elevation time series forcing file |
| write_FVCOM_forcing | Write data out to FVCOM netCDF forcing file. |
| write_FVCOM_grid | Write grid and connectivity to FVCOM format grid file |
| write_FVCOM_groundwater | Write an FVCOM groundwater time series forcing file. |
| write_FVCOM_heating | Write data out to FVCOM NetCDF heating file (for HEATING_CALCULATED). |
| write_FVCOM_meanflow | Export mean flow forcing at the open boundary to NetCDF. |
| write_FVCOM_meanflow_ascii | Export mean flow forcing files hard-coded into mod_obcs2.F. |
| write_FVCOM_nested_forcing | Creates an FVCOM nesting file. |
| write_FVCOM_obc | Write FVCOM format open boundary node list file |
| write_FVCOM_obs_TS | Dump observation profile of T/S to netcdf file to initialize |
| write_FVCOM_probes | Write a namelist for the timeseries extraction at specifc nodes. |
| write_FVCOM_restart | Duplicate an FVCOM restart file, replacing variable values with those |
| write_FVCOM_river | Write FVCOM 3.x NetCDF river file |
| write_FVCOM_river_ERSEM | Write FVCOM 3.x netCDF river file |
| write_FVCOM_river_nml | Write a namelist for the river nodes. |
| write_FVCOM_sediment | Write spatially-varying sediment threshold data. |
| write_FVCOM_spectide | Write an FVCOM spectral tidal elevation forcing file |
| write_FVCOM_sponge | Write FVCOM format sponge layer file |
| write_FVCOM_stations | Add a set of stations at which FVCOM will output wave data. |
| write_FVCOM_tsobc | Export temperature and salinity forcing at the open boundary. |
| write_FVCOM_tsobcERSEM | Export temperature and salinity forcing at the open boundary. |
| write_FVCOM_wind_ts_speed | Write out time-varying/spatially constant wind forcing as speed. |
| write_FVCOM_z0 | Dump spatially-variable or uniform bottom roughness (z0) to FVCOM forcing |
| write_WRF_forcing | Write data out to WRF format netCDF forcing file. |
| write_admesh_mesh | writes admesh mesh files from a Mobj matlab structure variable |
| write_dtank | Dump mesh to datatank file |
| write_model_nml | Script to create the model run namelist. |
| write_nesting_bdy_file | Write an FVCOM time series forcing file |
| write_river_info | Write information on the rivers |
Master index