Reviewers : Diptarup Mallick, Mwafaq Ramzi Haji, & Hala Taha Elbashir. Synthesized by Diptarup Mallick

Brief summary:

Major comments:

1. Clarification of mixed infection definition and diagnostic thresholds

The manuscript states that PCR was used for final infection classification because microscopy missed many mixed infections. However, the Ct thresholds, positivity cutoffs, and criteria for defining mixed infections are not clearly described. Since low-density infections are central to the conclusions, the manuscript would benefit from:

2. Cross-sectional design limits mechanistic interpretation

The authors appropriately acknowledge that the study is cross-sectional and cannot determine parasite kinetics or causal interactions. However, some sections of the Discussion still imply biological competition or suppression mechanisms between Pf and Pv. For example, statements regarding reticulocyte competition and anemia-mediated suppression are somewhat speculative.

The manuscript would be strengthened if:

3. Statistical methods require additional detail

The statistical analysis section is concise but lacks important details needed for reproducibility. Specifically:

Because data were collected from multiple sies over several years, temporal and geographic heterogeneity may influence transmission patterns.

4. Interpretation of mosquito infectivity results

The conclusion that there is “no evidence for competition within mosquitoes” is interesting and important. However, this conclusion should be interpreted cautiously because:

5. Data availability statement is incomplete

The manuscript states that data and code “will be made available” and references a future GitHub link. The authors should provide:

Cross‑sectional design limits causal inference on interspecies interactions.

The authors interpret lower gametocyte densities in mixed infections as potential evidence of blood‑stage competition (e.g., via reticulocyte limitation or dyserythropoiesis). However, all data derive from a single time point. Without longitudinal follow‑up of the same infections, it is impossible to exclude that the observed differences simply reflect the natural history (e.g., different ages of infection, asynchronous peaks) or unmeasured confounders (e.g., prior antimalarial use, host immunity). The Discussion acknowledges this limitation, but the text repeatedly infers “suppression” or competitive effects (e.g., “this finding appears consistent with prior observations that co‑infection may suppress P. falciparum gametocyte carriage”). I recommend toning down causal language throughout and explicitly stating that cross‑sectional associations cannot establish directionality.

Unbalanced sample sizes and potential selection bias.

The analysis hinges on comparisons between 284 Pv mono‑infections, 150 Pf mono‑infections, and only 77 mixed infections (of which 48 were used in feeding assays). The heavy imbalance raises concerns about statistical power, particularly for interaction analyses (e.g., Spearman correlations in mixed infections reported as non‑significant for Pf, p=0.570, and borderline for Pv, p=0.120). Were these null results truly due to absent association or simply a consequence of small sample size in the mixed‑infection group? Confidence intervals for the correlation coefficients should be presented. Moreover, participants were enrolled by microscopy, which misclassified 48% of mixed infections as mono‑infections (Table 1). How might this initial selection have biased the composition of the mono‑infection groups? The true “mono” groups may contain cryptic mixed infections, which would dilute differences. A sensitivity analysis restricting to PCR‑confirmed mono‑infections alone would strengthen the findings.

Missing details on confounder adjustment and model building.

The GAMM analysis (Fig 3, S1 Table) is central to the claim of no competition within mosquitoes. The models included log₁₀ gametocyte density and infection type (mono/mixed) as fixed effects, with a random intercept for individual. Were other potential confounders — site, season, age, fever status, asexual parasitemia — tested? These could influence both gametocyte density and mosquito infectivity independently of co‑infection status. Including them, or at least demonstrating that their omission does not alter the key result, would greatly strengthen the conclusion. Additionally, the model for P. falciparum used total gametocyte density (sum of male and female), but gametocyte sex ratio is a known determinant of infectivity; sex‑specific densities should be examined.

The Abstract states: *“Statistically significant positive correlations … were observed in mono‑infections (p<0.001), but not in mixed‑species infections (p=0.120 for Pv; and p=0.570 for Pf).”* This is taken as evidence that co‑infection decouples gametocyte production. However, a non‑significant p‑value does not demonstrate equivalence or absence of correlation. Moreover, Fig 3A and 3B appear to show scatterplots that might still show a positive trend; formal interaction tests between gametocyte density and infection type should be performed (e.g., via linear models with an interaction term) rather than separate correlations. Without this, the claim of a biological “decoupling” is unjustified.

The final sentence of the Abstract asserts: “Because mixed infections are often undetected, they represent a hidden risk for sustaining malaria transmission.” While it is true that microscopy misses many mixed infections, the study did not compare transmission potential between detected and undetected mixed infections, nor did it quantify the population‑level contribution of undetected mixed infections relative to mono‑infections. This statement should be tempered, or the necessary epidemiological modelling should be provided.

Several methodological details essential for reproducibility are omitted or unclear:

How were the standard curves for P. vivax qPCR validated? Using plasmid constructs assumes equal amplification efficiency, which should be verified against cultured parasites of known concentration.

The DMFA used colony‑maintained An. arabiensis, but wild mosquito populations may differ in vector competence. The authors previously demonstrated comparability for P. vivax (ref 20), but mixed infections were not specifically tested. A comment on this limitation is warranted.

Sporozoite data (S2 Fig) are described as “comparable”, but no statistical test is reported. Provide the appropriate test and exact p‑values.

The numbers of mosquitoes dissected for oocysts varied (81 mosquitoes total for some feeds?). Reporting variability in mosquito numbers per feed and how it was handled in the binomial GAMM is important.

The Discussion should more fully explore potential blood‑stage interaction mechanisms. The data show that P. vivax gametocyte density was lower in mixed infections despite no apparent vector‑stage competition. The authors should expand the mechanistic discussion—for example, elaborating on how P. falciparum‑induced anaemia and dyserythropoiesis may limit reticulocyte availability for P. vivax—to better contextualise these patterns and avoid the impression that the absence of mosquito‑stage competition negates the possibility of blood‑stage competition.

Minor comments:

1. Typographical and grammatical issues

Several typographical errors should be corrected:

A thorough language edit would improve readability.

2. Figure legends need improvement

Some figure legends are overly long and difficult to follow. Consider simplifying and separating methodological details from interpretive information.

3. Consistency in reporting parasite density units

Parasite densities are reported in different units (copies/µL, parasites/µL, transcripts/µL). While scientifically valid, more clear standardization or explanation would improve readability.

4. Reference formatting inconsistencies

Several references contain formatting inconsistencies or typographical errors. For example:

Strengths of the Study:

Comments on reporting:

Suggestions for future studies :

Competing interests

The authors declare that they have no competing interests.

Use of Artificial Intelligence (AI)

The authors declare that they used generative AI to come up with new ideas for their review.