# Visual Studio Code
.vscode/
*.code-workspace

# Local History extension
.history/

# Packaging / build artifacts
*.egg-info/
*.dist-info/
build/
dist/

# Data files
data/DLKcat/*
!data/DLKcat/.gitkeep

data/CataPro/*
!data/CataPro/.gitkeep

data/CatPred/*
!data/CatPred/.gitkeep

data/TurNuP/*
!data/TurNuP/.gitkeep

data/UniKP/*
!data/UniKP/.gitkeep

data/MMKcat/*
!data/MMKcat/.gitkeep

data/brenda/*
!data/brenda/.gitkeep
!data/brenda/brenda_filtered.csv

data/enzyextract/*
!data/enzyextract/.gitkeep
!data/enzyextract/enzy_extract_processed.csv

results/plots/*
!results/plots/.gitkeep

results/predictions/*
!results/predictions/.gitkeep
!results/predictions/brenda_predicted.csv
!results/predictions/enzy_extract_predicted.csv
# Python cache / build
__pycache__/
*.py[cod]
*.pyo
*.pyd
*.pyc

# Testing / type-checking cache
.pytest_cache/
.mypy_cache/

# Virtual environments / env files
venv/
.env
.env.*
.secrets/chemeo_api_key.txt

# Jupyter checkpoints
.ipynb_checkpoints/

# Temporary notebooks
scripts/temp_*.ipynb
scripts/sync_overleaf_figures.py