# Ignore Jupyter Notebook autosave checkpoints
.ipynb_checkpoints/

# Ignore test data and pipeline metadata
test/data/
test/pipeline_info/
test/run_test.sh
test/*.tsv
test/*.ipynb

# Ignore nextflow logs and temp directory
test/.nextflow/
test/.nextflow.log*

# Ignore test results and work directories (all contents recursively)
test/results/
test/work/

# Ignore LSF/Nextflow standard output and error files
test/*.out
test/*.err

