[input tsv files]
globi_verbatim_file = data/raw/verbatim-interactions.tsv.gz
tryDb_species_file = data/raw/Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv
trydb_file = data/raw/TRY-db-40340.txt.gz


[wd files]
wd_sparql_file = data/processed/wdTax_SPARQL.txt.gz 
wd_lineage_file = data/processed/wdTax_SPARQL_lineage_filtered_aligned.txt.gz 
wd_repeats_file = data/processed/wdTax_duplicates.txt 


[accessory files]
enpkg_wd = data/raw/enpkg_wd_pfId.csv.gz
trydb_wd = data/processed/wdTax_TRYdb.txt.gz
globi_wd = data/processed/wdTax_GloBI.txt.gz


[knowledge graph files]
bp_fileName = data/processed/globi/correctedBodyPartNamesGlobi.csv
ls_fileName = data/processed/globi/correctedLifeStageNamesGlobi.csv
bs_fileName = data/processed/globi/correctedBiologicalSexNames.tsv
dictFileNameQudt = data/processed/trydb/qudtMappingToTryDb.txt
dictFileNameEmi = data/processed/trydb/EmiMappingToTryDb.txt


[output files]
trydb_ttl = data/processed/KG/trydb_output.ttl.gz
globi_ttl = data/processed/KG/globi_output.ttl.gz


[processing]
batch_size = 100000
