abind==1.4-8
actuar==3.3-6
anndata==0.8.0
annotate==1.80.0
AnnotationDbi==1.64.1
AnnotationFilter==1.26.0
AnnotationHub==3.10.1
anytime==0.3.12
ape==5.8-1
aplot==0.2.8
aricode==1.0.3
arrow==21.0.0.1
ash==1.0-15
askpass==1.2.1
assertthat==0.2.1
audio==0.1-11
babelgene==22.9
backports==1.5.0
Banksy==0.99.7
base64enc==0.1-3
basilisk==1.14.3
basilisk.utils==1.14.1
batchelor==1.18.1
beachmat==2.18.1
beepr==2.0
beeswarm==0.4.0
BH==1.87.0-1
bigmemory==4.6.4
bigmemory.sri==0.1.8
billboarder==0.5.0
binom==1.1-1.1
Biobase==2.62.0
BiocFileCache==2.10.2
BiocGenerics==0.48.1
BiocIO==1.12.0
BiocManager==1.30.26
BiocNeighbors==1.20.2
BiocParallel==1.36.0
BiocSingular==1.18.0
BiocStyle==2.30.0
BiocVersion==3.18.1
biomaRt==2.58.2
Biostrings==2.70.3
bit==4.6.0
bit64==4.6.0-1
bitops==1.0-9
blob==1.2.4
bluster==1.12.0
bmp==0.3
bookdown==0.44
BPCells==0.3.0
brew==1.0-10
brio==1.1.5
broom==1.0.9
bslib==0.9.0
cachem==1.1.0
Cairo==1.6-5
callr==3.7.6
car==3.1-3
carData==3.0-5
caTools==1.18.3
celda==1.18.2
CELESTA==0.0.0.9000
CellBench==1.18.0
cellranger==1.1.0
checkmate==2.3.3
chorddiag==0.1.3
circlize==0.4.16
class==7.3-23
classInt==0.4-11
cli==3.6.5
clipr==0.8.0
clue==0.3-66
clusterProfiler==4.10.1
ClusterR==1.3.3
clustree==0.5.1
collections==0.3.9
colorspace==2.1-1
colourpicker==1.3.0
colourvalues==0.3.9
cols4all==0.8
combinat==0.0-8
commonmark==2.0.0
ComplexHeatmap==2.18.0
CompQuadForm==1.4.4
concaveman==1.1.0
conflicted==1.2.0
confuns==1.0.3
corpcor==1.6.10
corrplot==0.95
cowplot==1.2.0
cpp11==0.5.2
crayon==1.5.3
credentials==2.0.2
crosstalk==1.2.1
crul==1.6.0
curl==7.0.0
cyclocomp==1.1.1
data.table==1.17.8
data.tree==1.2.0
DBI==1.2.3
dbplyr==2.5.0
dbscan==1.2.3
decoupleR==2.8.0
DelayedArray==0.28.0
DelayedMatrixStats==1.24.0
deldir==2.0-4
dendextend==1.19.1
DEoptimR==1.1-4
Deriv==4.2.0
desc==1.4.3
DESeq2==1.42.1
devtools==2.4.5
dichromat==2.0-0.1
diffobj==0.3.6
digest==0.6.37
dir.expiry==1.10.0
directlabels==2025.6.24
DirichletReg==0.7-2
doBy==4.7.0
doParallel==1.0.17
DOSE==3.28.2
dotCall64==1.2
downlit==0.4.4
downloader==0.4.1
dplyr==1.1.4
dqrng==0.4.1
DropletUtils==1.22.0
DT==0.33
dtplyr==1.3.1
dtt==0.1-2.1
e1071==1.7-16
EBImage==4.44.0
edgeR==4.0.16
ellipse==0.5.0
ellipsis==0.3.2
emmeans==1.11.2
english==1.2-6
EnhancedVolcano==1.20.0
enrichplot==1.22.0
enrichR==3.4
ensembldb==2.26.0
estimability==1.5.1
evaluate==1.0.4
ExperimentHub==2.10.0
expint==0.1-8
extrafont==0.19
extrafontdb==1.0
factoextra==1.0.7
FactoMineR==2.12
fansi==1.0.6
farver==2.1.2
fastDummies==1.7.5
fastglm==0.0.3
fastmap==1.2.0
fastmatch==1.1-6
fftwtools==0.9-11
fgsea==1.28.0
fields==16.3.1
filelock==1.0.3
fitdistrplus==1.2-4
flashClust==1.01-2
FNN==1.1.4.1
fontawesome==0.5.3
fontBitstreamVera==0.1.1
fontLiberation==0.1.0
fontquiver==0.2.1
forcats==1.0.0
foreach==1.5.2
formatR==1.14
Formula==1.2-5
formulaic==0.0.8
fresh==0.2.1
fs==1.6.6
futile.logger==1.4.3
futile.options==1.0.1
future==1.67.0
future.apply==1.20.0
gargle==1.5.2
gdtools==0.4.2
generics==0.1.4
GenomeInfoDb==1.38.8
GenomeInfoDbData==1.2.11
GenomicAlignments==1.38.2
GenomicFeatures==1.54.4
GenomicRanges==1.54.1
GenSA==1.1.14.1
geohashTools==0.3.3
geojsonsf==2.0.3
geometries==0.2.4
gert==2.1.5
GetoptLong==1.0.5
gfonts==0.2.0
ggalluvial==0.12.5
ggalt==0.4.0
ggbeeswarm==0.7.2
ggcorrplot==0.1.4.1
ggdark==0.2.1
ggdendro==0.2.0
ggforce==0.5.0
ggfun==0.2.0
ggiraph==0.9.0
ggmosaic==0.3.3
ggnewscale==0.5.2
ggplot2==3.5.2
ggplotify==0.1.2
ggpubr==0.6.1
ggraph==2.2.2
ggrastr==1.0.2
ggrepel==0.9.6
ggridges==0.5.6
ggsci==3.2.0
ggsignif==0.6.4
ggspatial==1.1.10
ggtext==0.1.2
ggthemes==5.1.0
ggtree==3.10.1
gh==1.5.0
gitcreds==0.1.2
glmGamPoi==1.14.3
GlobalOptions==0.1.2
globals==0.18.0
glue==1.8.0
gmp==0.7-5
GO.db==3.18.0
goftest==1.2-3
googledrive==2.1.1
googlesheets4==1.1.1
GOSemSim==2.28.1
GPArotation==2025.3-1
gplots==3.2.0
graph==1.80.0
graphlayouts==1.2.2
gridExtra==2.3
gridGraphics==0.5-1
gridtext==0.1.5
grr==0.9.5
GSEABase==1.64.0
gson==0.1.0
gtable==0.3.6
gtools==3.9.5
harmony==1.2.3
haven==2.5.5
HDF5Array==1.30.1
hdf5r==1.3.12
HDO.db==0.99.1
here==1.0.1
hexbin==1.28.5
highr==0.11
hms==1.1.3
hrbrthemes==0.8.7
htmltools==0.5.8.1
htmlwidgets==1.6.4
httpcode==0.3.0
httpuv==1.6.16
httr==1.4.7
httr2==1.2.1
ica==1.0-3
ids==1.0.1
igraph==2.1.4
ijtiff==3.1.3
imager==1.0.5
ini==0.3.1
InSituType==2.0
interactiveDisplayBase==1.40.0
interp==1.1-6
IRanges==2.36.0
irlba==2.3.5.1
isoband==0.2.7
iterators==1.0.14
janeaustenr==1.0.0
janitor==2.2.1
jpeg==0.1-11
jquerylib==0.1.4
jsonify==1.2.2
jsonlite==2.0.0
kableExtra==1.4.0
KEGGREST==1.42.0
keys==0.1.1
knitr==1.50
labeling==0.4.3
lambda.r==1.2.4
languageserver==0.3.16
later==1.4.3
latticeExtra==0.6-30
lazyeval==0.2.2
leafem==0.2.4
leafgl==0.2.2
leaflegend==1.2.1
leaflet==2.2.2
leaflet.extras==2.0.1
leaflet.providers==2.0.0
leafpop==0.1.0
leafsync==0.1.0
leaps==3.2
leiden==0.4.3.1
leidenAlg==1.1.5
leidenbase==0.1.35
lessR==4.4.5
lexicon==1.2.1
lfa==2.2.0
librarian==1.8.1
lifecycle==1.0.4
limma==3.58.1
lintr==3.2.0
listenv==0.9.1
litedown==0.7
lme4==1.1-37
lmtest==0.9-40
locfdr==1.1-8
locfit==1.5-9.12
logger==0.4.0
loupeR==1.1.4
lsa==0.73.3
lubridate==1.9.4
lwgeom==0.2-14
magick==2.8.7
magrittr==2.0.3
mapproj==1.2.12
maps==3.4.3
maptiles==0.10.0
mapview==2.11.2
markdown==2.0
matchSCore2==0.1.0
mathjaxr==1.8-0
Matrix==1.6-5
Matrix.utils==0.9.7
MatrixGenerics==1.14.0
MatrixModels==0.5-4
matrixStats==1.5.0
maxLik==1.5-2.1
mclust==6.1.1
MCMCprecision==0.4.2
mdthemes==0.1.0
memoise==2.0.1
metadat==1.4-0
metafor==4.8-0
metapod==1.10.1
mgsub==1.7.3
microbenchmark==1.5.0
mime==0.13
miniUI==0.1.2
minqa==1.2.8
miscTools==0.6-28
mlbench==2.1-6
mnormt==2.1.1
modelr==0.1.11
msigdb==1.10.0
msigdbr==25.1.1
multcompView==0.1-10
munsell==0.5.1
mvtnorm==1.3-3
nabor==0.5.0
nanoarrow==0.7.0
nanotime==0.3.12
nloptr==2.2.1
NLP==0.3-2
numDeriv==2016.8-1.1
OmnipathR==3.10.1
openssl==2.3.3
openxlsx==4.2.8
org.Hs.eg.db==3.18.0
org.Mm.eg.db==3.18.0
outliers==0.15
pacman==0.5.1
pak==0.9.0
paletteer==1.6.0
pals==1.10
parallelly==1.45.1
patchwork==1.3.2
pbapply==1.7-4
pbkrtest==0.5.5
pbmcapply==1.5.1
pheatmap==1.0.13
pillar==1.11.0
pkgbuild==1.4.8
pkgconfig==2.0.3
pkgdown==2.1.3
pkgload==1.4.0
plogr==0.2.0
plotly==4.11.0
plotrix==3.8-4
plyr==1.8.9
png==0.1-8
polyclip==1.10-7
polynom==1.4-1
pracma==2.4.4
praise==1.0.0
presto==1.0.0
prettyunits==1.2.0
princurve==2.1.6
prismatic==1.1.2
pROC==1.19.0.1
processx==3.8.6
productplots==0.1.1
profvis==0.4.0
progeny==1.24.0
progress==1.2.3
progressr==0.15.1
proj4==1.0-15
promises==1.3.3
ProtGenerics==1.34.0
proxy==0.4-27
ps==1.9.1
psych==2.5.6
purrr==1.1.0
qdapRegex==0.7.10
qpdf==1.4.1
quadprog==1.5-8
quantreg==6.1
qvalue==2.34.0
R.cache==0.17.0
R.methodsS3==1.8.2
R.oo==1.27.1
R.utils==2.13.0
R6==2.6.1
ragg==1.4.0
randomcoloR==1.1.0.1
RANN==2.6.2
rapidjsonr==1.2.0
rappdirs==0.3.3
raster==3.6-32
rbibutils==2.3
rcmdcheck==1.4.0
RColorBrewer==1.1-3
Rcpp==1.1.0
RcppAnnoy==0.0.22
RcppArmadillo==14.6.3-1
RcppCCTZ==0.2.13
RcppDate==0.0.6
RcppEigen==0.3.4.0.2
RcppGSL==0.3.13
RcppHNSW==0.6.0
RcppHungarian==0.3
RcppInt64==0.0.5
RcppML==0.3.7
RcppParallel==5.1.10
RcppProgress==0.4.2
RcppSpdlog==0.0.22
RcppTOML==0.2.3
RcppZiggurat==0.1.8
RCurl==1.98-1.17
Rdpack==2.6.4
readbitmap==0.1.5
readr==2.1.5
readxl==1.4.5
reformulas==0.4.1
rematch==2.0.0
rematch2==2.1.2
remotes==2.5.0
renv==1.1.5
reprex==2.1.1
reshape2==1.4.4
ResidualMatrix==1.12.0
restfulr==0.0.16
reticulate==1.43.0
rex==1.2.1
Rfast==2.1.5.1
rhdf5==2.46.1
rhdf5filters==1.14.1
Rhdf5lib==1.24.2
RhpcBLASctl==0.23-42
Rhtslib==2.4.1
RImageJROI==0.1.3
rjson==0.2.23
rlang==1.1.6
rlist==0.4.6.2
rmarkdown==2.29
Rmixmod==2.1.10
robustbase==0.99-4-1
ROCR==1.0-11
rosm==0.3.0
roxygen2==7.3.2
rprojroot==2.1.0
Rsamtools==2.18.0
rspatial==1.0-0
RSpectra==0.16-2
RSQLite==2.4.3
rstatix==0.7.2
rstudioapi==0.17.1
rsvd==1.0.5
rtracklayer==1.62.0
Rtsne==0.17
Rttf2pt1==1.3.12
rversions==2.1.2
rvest==1.0.4
s2==1.1.9
S4Arrays==1.2.1
S4Vectors==0.40.2
S7==0.2.0
sandwich==3.1-1
sass==0.4.10
satellite==1.0.6
ScaledMatrix==1.10.0
scales==1.4.0
scater==1.30.1
scattermore==1.2
scatterpie==0.2.5
scatterplot3d==0.3-44
sccore==1.0.6
scDblFinder==1.16.0
scider==1.0.0
scran==1.30.2
scRNAseq==2.16.0
scrypt==0.1.6
scTHI==1.14.0
sctransform==0.4.2
scuttle==1.12.0
selectr==0.4-2
servr==0.32
sessioninfo==1.2.3
Seurat==5.3.0
SeuratData==0.2.2.9001
SeuratDisk==0.0.0.9021
SeuratObject==5.2.0
SeuratWrappers==0.3.4
sf==1.0-21
sfheaders==0.4.4
sfhotspot==1.0.0
shadowtext==0.1.6
shape==1.4.6.1
shiny==1.11.1
shinybusy==0.3.3
shinydashboard==0.7.3
shinyhelper==0.3.2
shinyjs==2.1.0
shinymanager==1.0.410
shinythemes==1.2.0
shinyWidgets==0.9.0
SingleCellExperiment==1.24.0
sitmo==2.0.2
slam==0.1-55
slingshot==2.10.0
slippymath==0.3.1
sm==2.2-6.0
smoothr==1.1.0
snakecase==0.11.1
snow==0.4-4
SnowballC==0.7.1
sourcetools==0.1.7-1
sp==2.2-0
spacesXYZ==1.6-0
spacexr==2.2.1
spam==2.11-1
SparseArray==1.2.4
SparseM==1.84-2
sparseMatrixStats==1.14.0
SPATA2==2.0.4
SPATAData==0.0.0.9000
spatialDE==1.8.1
SpatialExperiment==1.12.0
SpatialKDE==0.8.2
spatialrisk==0.7.2
spatstat==3.4-0
spatstat.data==3.1-8
spatstat.explore==3.5-2
spatstat.geom==3.5-0
spatstat.linnet==3.3-1
spatstat.model==3.4-0
spatstat.random==3.4-1
spatstat.sparse==3.1-0
spatstat.univar==3.1-4
spatstat.utils==3.1-5
spData==2.3.4
spdep==1.3-13
spdl==0.0.5
speckle==1.2.0
stars==0.6-8
statmod==1.5.0
strex==2.0.1
stringdist==0.9.15
stringi==1.8.7
stringr==1.5.1
styler==1.10.3
SummarizedExperiment==1.32.0
svglite==2.2.1
sys==3.4.3
systemfonts==1.2.3
syuzhet==1.0.7
tensor==1.5.1
terra==1.8-60
testthat==3.2.3
textclean==0.9.3
textshape==1.7.5
textshaping==1.0.1
tgamtheme==0.1.0
tibble==3.3.0
TidyDensity==1.5.1
tidygraph==1.3.1
tidyr==1.3.1
tidyselect==1.2.1
tidytext==0.4.3
tidytree==0.4.6
tidyverse==2.0.0
tiff==0.1-12
tiledb==0.32.0.5
timechange==0.3.0
tinytex==0.57
tmap==4.1
tmaptools==3.3
tokenizers==0.3.0
topGO==2.54.0
tradeSeq==1.16.0
TrajectoryUtils==1.10.1
treeio==1.26.0
triebeard==0.4.1
tvthemes==1.3.3
tweenr==2.0.3
tzdb==0.5.0
umap==0.2.10.0
units==0.8-7
upstartr==0.1.2
urlchecker==1.0.1
urltools==1.7.3.1
usethis==3.1.0
utf8==1.2.6
uuid==1.2-1
uwot==0.2.3
V8==6.0.6
vctrs==0.6.5
vioplot==0.5.1
vipor==0.4.7
viridis==0.6.5
viridisLite==0.4.2
visNetwork==2.1.2
vroom==1.6.5
waldo==0.6.2
whisker==0.4.1
widgetframe==0.3.1
withr==3.0.2
wk==0.9.4
writexl==1.5.4
WriteXLS==6.8.0
xfun==0.53
xgboost==1.7.11.1
XML==3.99-0.19
xml2==1.4.0
xmlparsedata==1.0.5
xopen==1.0.1
xtable==1.8-4
xts==0.14.1
XVector==0.42.0
yaml==2.3.10
yulab.utils==0.2.1
zeallot==0.2.0
zigg==0.0.2
zip==2.3.3
zlibbioc==1.48.2
zoo==1.8-14
base==4.3.2
boot==1.3-28.1
class==7.3-22
cluster==2.1.4
codetools==0.2-19
compiler==4.3.2
datasets==4.3.2
foreign==0.8-85
graphics==4.3.2
grDevices==4.3.2
grid==4.3.2
KernSmooth==2.23-22
lattice==0.21-9
MASS==7.3-60
Matrix==1.6-1.1
methods==4.3.2
mgcv==1.9-0
nlme==3.1-163
nnet==7.3-19
parallel==4.3.2
rpart==4.1.21
spatial==7.3-17
splines==4.3.2
stats==4.3.2
stats4==4.3.2
survival==3.5-7
tcltk==4.3.2
tools==4.3.2
utils==4.3.2
