\data_sim : data generated for FIG1 and FIG2. The BAK files are backups in case the file gets deleted.

\algae_info : 
-photoshock_indexes.csv : photoshock start indexes, duration, and position of the front of each alga (x0,y0 in px)
-good_swimmers_photoshock_indexes.csv : photoshock indexes of algae satisfying PSI>0.85 before AND after the photoshock.

\exp_screenshots : images from every experiments.

\velocities : .csv files of the velocities for every algae with name 'velocities_{experiment}_posy{position}.csv'. Positions (-1,0,1) are the same as cited in the article.

\post_piv_scripts : the two scripts made by AA that I modified to generate the velocities files from the PIV data (sides and front).

\fonts : fonts used in matplotlib for all the figures.

\main.ipynb : jupyter notebook script to display the figures.