echo 'deb http://apt.postgresql.org/pub/repos/apt/ wheezy-pgdg main' >> /etc/apt/sources.list.d/pgdg.list

echo 'deb http://download.opensuse.org/repositories/home:/fbergman:/libsbml/Debian_7.0/ /' >> /etc/apt/sources.list.d/python-libsbml.list 

aptitude update

aptitude install postgresql-client-9.3
aptitude install postgresql-server-dev-9.3

# setup host access in pg_hba.conf; restart postgresql server

aptitude install libbz2-dev
aptitude install swig
aptitude install python-libsbml
aptitude install glpk
aptitide install libgmp-dev
aptitude install python-scipy
aptitude install python-minimock
aptitude install libblas-dev
aptitude install liblapack-dev
aptitude install gfortran



pip install pip
pip install nose
pip install ez_setup
pip install cobra==0.2.1
pip install glpk
pip install psycopg2
pip install biopython
pip install helperlibs
pip install pyquery
pip install pyExcelerator
pip install straight.plugin
pip install --upgrade numpy
pip install scipy

Prodigal: Has to be compiled;
Source:
git clone https://github.com/hyattpd/Prodigal.git