﻿nullJ	Simard, N; Weise, AM; Rochon, A; Briski, E; Macisaac, HJ; Mckindsey, CW				Simard, Nathalie; Weise, Andrea M.; Rochon, Andre; Briski, Elizabeta; Macisaac, Hugh J.; Mckindsey, Christopher W.			Discharge of ballast residual sediments during de-ballasting procedures: A more realistic estimate of propagule pressure	MARINE POLLUTION BULLETIN			English	Article						Invasive species; Ballast sediment; Dinoflagellate cyst; Invertebrate resting stage; Propagule pressure	DINOFLAGELLATE CYSTS; TANK SEDIMENTS; RESTING EGGS; GREAT-LAKES; EAST-COAST; WATER; TRANSPORT; EFFICACY; MARINE; INVERTEBRATES	Ship ballast residual sediments are an important vector of introduction for non-indigenous species. We evaluated the proportion of residual sediments and associated organisms released during de-ballasting operations of a commercial bulk carrier and estimated a total residual sediment accumulation of similar to 13 t, with accumulations of up to 20 cm in some tank areas that had accumulated over 11 years. We observed interior hull-fouling (anemones, hydrozoans, and bryozoans) and high abundances of viable invertebrate resting stages and dinoflagellate cysts in sediments. Although we determined that <1 % of residual sediments and associated resting stages were resuspended and released into the environment during individual de-ballasting events, this represents a substantial inoculum of 21 x 10(7) viable dinoflagellate cysts and 7.5 x 10(5) invertebrate resting stages with many taxa being nonindigenous, cryptogenic, or toxic/harmful species. The methods used and results will help estimate propagule pressure associated with this pathway and will be relevant for residual sediments and nonindigenous species management.	[Simard, Nathalie; Weise, Andrea M.; Mckindsey, Christopher W.] Fisheries & Oceans Canada, Maurice Lamontagne Inst, 850 Route Mer, Mont Joli, PQ G5H 3Z4, Canada; [Rochon, Andre] Univ Quebec Rimouski, Inst Sci Mer, 310 Allee Ursulines, Rimouski, PQ G5L 3A1, Canada; [Briski, Elizabeta] GEOMAR Helmholtz Ctr Ocean Res Kiel, Wischhofstr 1-3, D-24148 Kiel, Germany; [Macisaac, Hugh J.] Univ Windsor, Great Lakes Inst Environm Res, Windsor, ON, Canada	Fisheries & Oceans Canada; University of Quebec; Universite du Quebec a Rimouski; Helmholtz Association; GEOMAR Helmholtz Center for Ocean Research Kiel; University of Windsor	Mckindsey, CW (通讯作者)，Fisheries & Oceans Canada, Maurice Lamontagne Inst, 850 Route Mer, Mont Joli, PQ G5H 3Z4, Canada.	Chris.McKindsey@dfo-mpo.gc.ca	Briski, Elizabeta/P-4108-2019		Fisheries and Oceans Canada (Aquatic Invasive Species Program); Canadian Aquatic Invasive Species Network (CAISN); NSERC Discovery grants; Canada Research Chair; Institut des Sciences de la Mer (ISMER) of the Universite du Quebec a Rimouski	Fisheries and Oceans Canada (Aquatic Invasive Species Program); Canadian Aquatic Invasive Species Network (CAISN); NSERC Discovery grants(Natural Sciences and Engineering Research Council of Canada (NSERC)); Canada Research Chair(Natural Resources CanadaCanadian Forest ServiceCanada Research Chairs); Institut des Sciences de la Mer (ISMER) of the Universite du Quebec a Rimouski	This work was supported by Fisheries and Oceans Canada (Aquatic Invasive Species Program), the Canadian Aquatic Invasive Species Network (CAISN), NSERC Discovery grants (HJM, AR), Canada Research Chair (HJM), and the Institut des Sciences de la Mer (ISMER) of the Universite du Quebec a Rimouski.	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J	Liu, XH; Tao, Z; Liu, YY; Hu, ZX; Deng, YY; Shang, LX; Lim, PT; Chai, ZY; Tang, YZ				Liu, Xiaohan; Tao, Zhe; Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Lim, Po-Teen; Chai, Zhaoyang; Tang, Ying-Zhong			Resting Cysts of the Toxic Dinoflagellate <i>Gymnodinium catenatum</i> (Dinophyceae) Ubiquitously Distribute along the Entire Coast of China, with Higher Abundance in Bloom-Prone Areas	JOURNAL OF MARINE SCIENCE AND ENGINEERING			English	Article						harmful algal blooms (HABs); Gymnodinium catenatum; resting cyst; geographic distribution; quantitative PCR	HARMFUL ALGAL BLOOMS; RED TIDE; GONYAULAX-TAMARENSIS; GRAHAM; PROFILE; PHYLOGENY; HEALTH; UNIQUE; GULF	Blooms of Gymnodinium catenatum have occurred occasionally in different areas of China and caused tremendous economic loss and even threatened human health. Not only is G. catenatum an important harmful-algal-bloom (HAB)-causing species, but also the only gymnodinioid dinoflagellate known to produce paralytic shellfish poisoning toxins (PSTs). Due to the germination of resting cysts, which often initiates blooms, the distribution and abundance of cysts in sediments and particularly the confirmation of cyst beds are important information for understanding and predicting dinoflagellate blooms. In this research, 199 sediment samples were collected from China's coastal seas, ranging from the Beidaihe in the Bohai Sea (BS) to the southernmost sample from the Nansha Islands of the South China Sea (SCS). TaqMan quantitative PCR (qPCR) assays with species-specific primers and probes were developed to specifically detect the distribution and abundance of cysts in the 199 samples. The detection revealed that G. catenatum cysts were widely present in the sediments (126 of the 199 samples), with 93.55%, 74.65%, 42.37%, and 50% of the samples detected positively from the BS, YS, ECS and SCS, respectively, and covering the vast sea area from Nansha Islands to the Beidaihe area. The single-cyst morpho-molecular identification in the samples from Beidaihe confirmed the existence of G. catenatum cysts in the BS, and the positive detections of G. catenatum cysts using the qPCR methods. While G. catenatum cysts were widely distributed in all four seas of China, the average abundance was relatively low (1.0 cyst per gram of wet sediment). Three samples from the East China Sea (ECS), however, contained G. catenatum cysts at a relatively higher level (23 cysts g(-1) wet sediment) than other sea areas, suggesting a pertinence of cyst abundance to the frequent occurrences of G. catenatum blooms in the area during recent years. Collectively, for G. catenatum being such an important toxic and HAB-causing species globally, the ubiquitous distribution of its cysts along the coastal waters of China and higher abundance in the bloom-prone areas warns us of a risk that cyst beds, although currently low in abundance, may seed HABs in any and many sea areas of China at any forthcoming year, and particularly those areas with records of frequent HABs outbreaks in the past.	[Liu, Xiaohan; Tao, Zhe; Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying-Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying-Zhong] Qingdao Marine Sci & Technol Ctr, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Liu, Yuyang; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying-Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Liu, Xiaohan] Natl Marine Environm Monitoring Ctr, Dalian 116023, Peoples R China; [Tao, Zhe] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Hu, Zhangxi] Guangdong Ocean Univ, Coll Fisheries, Dept Aquaculture, Zhanjiang 524088, Peoples R China; [Lim, Po-Teen] Univ Malaya, Inst Ocean & Earth Sci, Bachok 16310, Kelantan, Malaysia	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; National Marine Environmental Monitoring Center; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Guangdong Ocean University; Universiti Malaya	Chai, ZY; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Chai, ZY; Tang, YZ (通讯作者)，Qingdao Marine Sci & Technol Ctr, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Chai, ZY; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	zhaoyangchai@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	Tao, Zhe/LIG-2380-2024; Li, Yang/KFB-5350-2024; ZHANG, hui jie/HTN-1690-2023; Chai, Zhaoyang/F-7485-2017; Lim, Po Teen/C-9758-2013	Deng, Yunyan/0000-0001-5967-3611; Liu, Yuyang/0000-0003-0418-4989; Lim, Po Teen/0000-0003-2823-0564; Chai, Zhaoyang/0000-0003-0526-8930; Hu, Zhangxi/0000-0002-4742-4973	National Key Research and Development Program of China; Science and Technology Innovation Project of Laoshan Laboratory [LSKJ202203700]; Key Research Infrastructures in the CAS Field Stations of the Chinese Academy of Science [KFJ-SW-YW047]; Science and Technology Basic Resources Investigation Program of China [2018FY100200];  [2022YFC3105201]	National Key Research and Development Program of China(National Key Research & Development Program of China); Science and Technology Innovation Project of Laoshan Laboratory; Key Research Infrastructures in the CAS Field Stations of the Chinese Academy of Science; Science and Technology Basic Resources Investigation Program of China; 	This research was funded by the National Key Research and Development Program of China (grant No. 2022YFC3105201), the Science and Technology Innovation Project of Laoshan Laboratory (grant No. LSKJ202203700), the Key Research Infrastructures in the CAS Field Stations of the Chinese Academy of Science (grant No. KFJ-SW-YW047), and the Science and Technology Basic Resources Investigation Program of China (2018FY100200).	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J	Rubino, F; Denti, G; Belmonte, M; Belmonte, G				Rubino, Fernando; Denti, Giuseppe; Belmonte, Manuela; Belmonte, Genuario			Plankton Resting Stages Distribution in Bottom Sediments along the Confinement Gradient of the Taranto Sea System (Ionian Sea, Southern Italy)	JOURNAL OF MARINE SCIENCE AND ENGINEERING			English	Article						resting stages; cyst bank; confined coastal areas; Dinophyta; Copepoda; plankton; resurrection ecology; Taranto Sea System; Mediterranean Sea	MAR PICCOLO; DINOFLAGELLATE CYSTS; BODY-SIZE; ZOOPLANKTON; ASSEMBLAGES	The abundance distribution and species richness of encysted plankton have been investigated in the bottom sediments of the Taranto Marine System (southern Italy) for contributing to the understanding of plankton dynamics in a confined coastal area. This confined area is characterized by four contiguous basins with different degrees of confinement. The investigation was carried out in the fall season with the aim to intercept a period of rich cyst production from the plankton before overwintering. From the analysis of a total of 36 sediment samples, from 12 sample sites, the highest abundance of cysts and species richness were registered in the confined part of the system. A total of 103 cyst morphotypes have been recognized in the whole area, with highest abundances and taxa richness in the most confined stations. These results, suggesting a benthic-pelagic exchange of living matter, more intense in confined environments than in the open sea, highlight the necessity of (i) including the analysis of sediment cyst banks in studies of plankton dynamics, and (ii) to consider the role of confined areas, where the variability of environmental conditions favours a higher planktonic biodiversity in the sediments than in the water column.	[Rubino, Fernando; Denti, Giuseppe; Belmonte, Manuela] CNR Water Res Inst IRSA, I-74100 Taranto, Italy; [Belmonte, Genuario] Univ Salento, Dept Biol & Environm Sci & Technol, I-73100 Lecce, Italy	Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR); University of Salento	Belmonte, G (通讯作者)，Univ Salento, Dept Biol & Environm Sci & Technol, I-73100 Lecce, Italy.	fernando.rubino@irsa.cnr.it; giuseppe.denti@irsa.cnr.it; manuela.belmonte@vicodecarolis.edu.it; genuario.belmonte@unisalento.it	Rubino, Fernando/GOP-0332-2022; Denti, Giuseppe/LIG-9854-2024; BELMONTE, GENUARIO/AAG-4029-2020	Denti, Giuseppe/0000-0003-0204-5942; belmonte, genuario/0000-0002-7473-116X; Rubino, Fernando/0000-0003-2552-2510	Italian Ministry of University and Research; CNR IRSA of Taranto [3138, 3175]; National Recovery and Resilience Plan [CN_00000033, 1034, CUP D33C22000960007]; European Union NextGenerationEU	Italian Ministry of University and Research(Ministry of Education, Universities and Research (MIUR)); CNR IRSA of Taranto; National Recovery and Resilience Plan; European Union NextGenerationEU(European Union (EU))	The study did not receive direct funding. It, however, was carried out in the framework of the Project CyDiTSe (Cyst Distribution in Taranto Seas), funded by CNR IRSA of Taranto, and it was also indirectly sustained by the National Recovery and Resilience Plan (NRRP), Mission 4 Component 2 Investment 1.4-Call for tender n. 3138 of 16 December 2021, rectified by Decree n. 3175 of 18 December 2021 of Italian Ministry of University and Research funded by the European Union NextGenerationEU; Award Number: Project code CN_00000033, Concession Decree No. 1034 of 17 June 2022 adopted by the Italian Ministry of University and Research, CUP D33C22000960007, Project title "National Biodiversity Future Center-NBFC".	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E., 1949, The mathematical theory of communication; UYE S, 1994, HYDROBIOLOGIA, V293, P513, DOI 10.1007/BF00229979; VATOVA A, 1972, Bollettino di Pesca Piscicoltura e Idrobiologia, V27, P81; Wang ZH, 2022, FRONT MAR SCI, V9, DOI 10.3389/fmars.2022.910327; Zonneveld KAF, 2015, PALYNOLOGY, V39, P387, DOI 10.1080/01916122.2014.990115	42	0	0	0	0	MDPI	BASEL	ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND		2077-1312		J MAR SCI ENG	J. Mar. Sci. Eng.	SEP	2024	12	9							1653	10.3390/jmse12091653	http://dx.doi.org/10.3390/jmse12091653			14	Engineering, Marine; Engineering, Ocean; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Oceanography	H4A0N		gold			2025-03-11	WOS:001322874600001
J	Wang, R; Cheng, Y; Wan, QQ; Cao, RH; Cai, J; Huang, TL; Wen, G				Wang, Ru; Cheng, Ya; Wan, Qiqi; Cao, Ruihua; Cai, Jie; Huang, Tinglin; Wen, Gang			Emergency control of dinoflagellate bloom in freshwater with chlorine enhanced by solar radiation: Efficiency and mechanism	WATER RESEARCH			English	Article						Peridinium umbonatum; Solar/chlorine; Enhanced; Influencing factors; Apoptosis mechanism	MICROCYSTIS-AERUGINOSA; VERTICAL MIGRATION; CELL INTEGRITY; BALLAST WATER; DISINFECTION; DEGRADATION; INACTIVATION; PHOTOLYSIS; PHOTOSYNTHESIS; IDENTIFICATION	Dinoflagellate requires a lower temperature and blooms frequently in the spring and autumn compared to regular cyanobacteria. The outbreak of dinoflagellate bloom will also lead to the death of some aquatic organisms. However, research on freshwater dinoflagellates is still lacking due to the challenges posed by classification and culture in laboratory. The removal effect and mechanism of Peridinium umbonatum (P. umbonatum, a typical dinoflagellate) were investigated using solar/chlorine in this study. The effect of simulated solar alone on the removal of algae was negligible, and chlorine alone had only a slight effect in removing algae. However, solar/ chlorine showed a better removal efficiency with shoulder length reduction factor and kmax enhancement factor of 2.80 and 3.8, respectively, indicating a shorter latency period and faster inactivation rate for solar/chlorine compared to solar and chlorine alone. The removal efficiency of algae gradually increased with the chlorine dosage, but it dropped as the cell density grew. When the experimental temperature was raised to 30 degrees C, algal removal efficiency significantly increased, as the temperature was unsuitable for the survival of P. umbonatum. Attacks on cell membranes by chlorine and hydroxyl radicals (center dot OH) produced by solar/chlorine led to a decrease in cell membrane integrity, leading to a rise in intracellular reactive oxygen species and an inhibition of photosynthetic and antioxidant systems. Cell regeneration was not observed in either the chlorine or solar/ chlorine systems due to severe cell damage or cysts formation. In addition, natural solar radiation was demonstrated to have the same enhancing effect as simulated solar radiation. However, the algal removal efficiency of solar/chlorine in real water was reduced compared to 119 medium, mainly due to background material in the real water substrate that consumed the oxidant or acted as shading agents.	[Wang, Ru; Cheng, Ya; Wan, Qiqi; Cao, Ruihua; Cai, Jie; Huang, Tinglin; Wen, Gang] Xian Univ Architecture & Technol, Res Stn Water Qual Qinling Mt, Shaanxi Prov Field Sci Observat, Xian 710055, Peoples R China; [Wang, Ru; Cheng, Ya; Wan, Qiqi; Cao, Ruihua; Cai, Jie; Huang, Tinglin; Wen, Gang] Xian Univ Architecture & Technol, Shaanxi Key Lab Environm Engn, Xian 710055, Peoples R China; [Huang, Tinglin; Wen, Gang] Xian Univ Architecture & Technol, Collaborat Innovat Ctr Water Pollut Control & Wate, Xian 710055, Peoples R China	Xi'an University of Architecture & Technology; Xi'an University of Architecture & Technology; Xi'an University of Architecture & Technology	Wen, G (通讯作者)，Xian Univ Architecture & Technol, Res Stn Water Qual Qinling Mt, Shaanxi Prov Field Sci Observat, Xian 710055, Peoples R China.; Wen, G (通讯作者)，Xian Univ Architecture & Technol, Shaanxi Key Lab Environm Engn, Xian 710055, Peoples R China.; Wen, G (通讯作者)，Xian Univ Architecture & Technol, Collaborat Innovat Ctr Water Pollut Control & Wate, Xian 710055, Peoples R China.	hitwengang@163.com	Cai, Jie/ABB-4771-2020		Natural Science Foundation of China [52370018, 52300010]; Shaanxi Provincial Key Scientific and Technological Innovation Team [2023-CX-TD-32]; China Postdoctoral Science Foundation [2023MD734208]; Research Program of Youth Innovation Team (Shaanxi Provincial Department of Education) [23JP077]; Technology Innovation Leading Program of Shaanxi [2023GXLH-058]	Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Shaanxi Provincial Key Scientific and Technological Innovation Team; China Postdoctoral Science Foundation(China Postdoctoral Science Foundation); Research Program of Youth Innovation Team (Shaanxi Provincial Department of Education); Technology Innovation Leading Program of Shaanxi	This research was funded by the Natural Science Foundation of China (Grant No. 52370018, 52300010) , Shaanxi Provincial Key Scientific and Technological Innovation Team (2023-CX-TD-32) , China Postdoctoral Science Foundation (No. 2023MD734208) , Research Program of Youth Innovation Team (Shaanxi Provincial Department of Education, No. 23JP077) , and Technology Innovation Leading Program of Shaanxi (No.2023GXLH-058) .	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NOV 1	2024	265								122275	10.1016/j.watres.2024.122275	http://dx.doi.org/10.1016/j.watres.2024.122275		AUG 2024	11	Engineering, Environmental; Environmental Sciences; Water Resources	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Environmental Sciences & Ecology; Water Resources	D9I1E	39163711				2025-03-11	WOS:001299235300001
J	Ouyang, H; Chen, JZ; Lin, LP; Zheng, H; Xie, CL; Wang, CF; Wang, ZH				Ouyang, Hong; Chen, Jiazhuo; Lin, Lanping; Zheng, Hu; Xie, Changliang; Wang, Chaofan; Wang, Zhaohui			Metabarcoding and co-occurrence network reveal significant effects of mariculture on benthic eukaryotic microalgal community: A case study in Daya Bay of the South China Sea	MARINE POLLUTION BULLETIN			English	Article						Eukaryotic microalgae; Resting stages; Surface sediments; Metabarcoding; Biogenic elements; Co-occurrence network	HARMFUL ALGAL BLOOMS; SURFACE SEDIMENTS; BIOGENIC ELEMENTS; RESTING CYSTS; ENVIRONMENTAL-CHANGES; SPATIAL-DISTRIBUTION; YELLOW SEA; DINOFLAGELLATE; PHYTOPLANKTON; PATTERNS	Benthic eukaryotic microalgae were analyzed by metabarcoding the partial 18S rRNA gene in Daya Bay bimonthly in 2021. Altogether 941 eukaryotic microalgal OTUs were detected, belonging to 27 classes of 8 phyla. Dinophyta and Chlorophyta were the dominant phyla. Microalgal community in the mariculture zone differed significantly from those in non-mariculture zone, reflected by low alpha diversity indexes and increasing abundance and richness of chlorophytes and correspondingly decreasing of dinoflagellates. The abundant occurrences of the pico- and nano-sized taxa such as the chlorophyte Picochlorum in the mariculture zone suggested that nutrient enrichment might result in the miniaturization of the benthic eukaryotic microalgae. The cooccurrence network suggested more negative interactions between taxa in the mariculture zone. A total of 41 algal bloom and/or harmful algal bloom (HAB) species were detected in this study, suggesting a high potential risk of HABs in Daya Bay, especially for the recurrent bloom species Scrippsiella acuminata.	[Ouyang, Hong; Chen, Jiazhuo; Lin, Lanping; Zheng, Hu; Xie, Changliang; Wang, Chaofan; Wang, Zhaohui] Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China	Jinan University	Wang, ZH (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China.	twzh@jnu.edu.cn	Wang, Zhaohui/C-9795-2016		National Key Research and Development Program of China [2022YFE0122100]; National Natural Science Foundation of China [42076141]	National Key Research and Development Program of China(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was supported by the National Key Research and Development Program of China (No. 2022YFE0122100) , and the National Natural Science Foundation of China (No. 42076141) .	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J	Ando, T; Zonneveld, K; Versteegh, GJM; Ishigaki, M; Yamamoto, T; Matsuoka, K				Ando, Takuto; Zonneveld, Karin; Versteegh, Gerard J. M.; Ishigaki, Mika; Yamamoto, Tatsuyuki; Matsuoka, Kazumi			Why cysts of<i> Alexandrium</i><i> catenella</i> and/or<i> A.</i><i> pacificum</i> (Gonyaulacales, Dinophyceae) do not remain in sediments as fossils?	REVIEW OF PALAEOBOTANY AND PALYNOLOGY			English	Article						Alexandrium catenella; Cyst wall; Fourier Transform infrared Spectroscopy (FTIR); Lingulodinium machaerophorum; Raman spectroscopy	DINOFLAGELLATE CYSTS; BAY; EXCAVATA; WALL	The dinoflagellate genus Alexandrium contains a number of species that produce paralytic shellfish toxins and have been the focus of attention as toxic plankton for harmless algal studies. Among Alexandrium species, A. catenella and A. pacificum form ellipsoidal-shaped resting cysts, which are preserved in marine sediments, and have attracted attention as potential seeds for future proliferation after favorable environmental conditions environmental improvement. However, although these cysts are preserved in surface of marine sediments, there is no record of their occurrence from solidified sediments as fossils. In order to clarify the reason for this, we investigated the differences in the chemical composition of cyst walls between colorless cyst of Alexandrium catenella/pacificum and Lingulodinium machaerophorum, Polysphaeridium zoharyi, Spiniferites spp. by measuring the thickness of cyst walls and using Fourier Transform Infrared Spectroscopy (FTIR) and Raman Spectroscopy. The results showed that the cyst wall of A. catenella/pacificum and L. machaerophorum were all composed of cellulosic organic matter. However, A. catenella/pacificum have the higher percentage of alpha- /beta-glucosidic linkages and that the thickness of their cyst walls is about one-third of that of L. machaerophorum. Therefore, these are reasons for the cysts of A. catenella/pacificum being more easily degraded in the sediment.	[Ando, Takuto] Akita Univ, Grad Sch Int Resource Sci, Akita, Japan; [Ando, Takuto] Shimane Univ, Estuary Res Ctr, Matsue, Japan; [Zonneveld, Karin] Univ Bremen, Ctr Marine Environm Sci, MARUM, Leobener Str 8, D-28359 Bremen, Germany; [Zonneveld, Karin; Versteegh, Gerard J. M.] Constructor Univ Bremen, Dept Phys & Earth Sci, Campus Ring 1, D-28759 Bremen, Germany; [Ishigaki, Mika] Shimane Univ, Ctr Promot Project Res, Matsue, Japan; [Yamamoto, Tatsuyuki] Shimane Univ, Fac Life & Environm Sci, Matsue, Japan; [Matsuoka, Kazumi] Nagasaki Univ, Inst East China Sea Res, Nagasaki, Japan; [Matsuoka, Kazumi] Osaka Museum Nat Hist, Osaka, Japan	Akita University; Shimane University; University of Bremen; Shimane University; Shimane University; Nagasaki University	Ando, T (通讯作者)，Akita Univ, Grad Sch Int Resource Sci, Akita, Japan.; Ando, T (通讯作者)，Shimane Univ, Estuary Res Ctr, Matsue, Japan.; Matsuoka, K (通讯作者)，Nagasaki Univ, Inst East China Sea Res, Nagasaki, Japan.; Matsuoka, K (通讯作者)，Osaka Museum Nat Hist, Osaka, Japan.	tact@gipc.akita-u.ac.jp; kzonneveld@marum.de; ishigaki@life.shimane-u.ac.jp; tyamamot@life.shimane-u.ac.jp; kazu-mtk@nagasaki-u.ac.jp			FY2019 program - Arctic Challenge for Sustainability (ArCS); JSPS KAKENHI [19K23448, 20K14591, 20K04089]	FY2019 program - Arctic Challenge for Sustainability (ArCS); JSPS KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	This work is supported by FY2019 program for overseas visits by young researchers funded by Arctic Challenge for Sustainability (ArCS) (T.A.), and JSPS KAKENHI Grant Number 19K23448 (T.A.), 20K14591 (T.A.) and 20K04089 (K.M).	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Palaeobot. Palynology	OCT	2024	329								105161	10.1016/j.revpalbo.2024.105161	http://dx.doi.org/10.1016/j.revpalbo.2024.105161		AUG 2024	11	Plant Sciences; Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Paleontology	C3V5W					2025-03-11	WOS:001288673500001
J	Deng, YY; Li, FT; Shang, LX; Hu, ZX; Yue, CX; Tang, YZ				Deng, Yunyan; Li, Fengting; Shang, Lixia; Hu, Zhangxi; Yue, Caixia; Tang, Ying Zhong			The resting cyst of dinoflagellate <i>Scrippsiella acuminata</i> host bacterial microbiomes with more diverse trophic strategies under conditions typically observed in marine sediments	FRONTIERS IN MICROBIOLOGY			English	Article						acetogenic bacteria (acetogen); ammonium-oxidizing (anammox) bacteria; anaerobic respiration; chemotrophic bacteria; dinoflagellate resting cysts; nitrate-reducing bacteria (NRB); selective preservation; sulfate-reducing bacteria (SRB)	ALEXANDRIUM DINOPHYCEAE; HIROSHIMA BAY; TROCHOIDEA CYSTS; ORGANIC-MATTER; DEGRADATION; VIABILITY; GROWTH; LINGULODINIUM; ENVIRONMENTS; PHAEOBACTER	Variation in the condition of marine sediments provides selective preservation milieus, which act as a key determinant for the abundance and distribution of dinoflagellate resting cysts in natural sediments. Microbial degradation is an understudied biological factor of potential importance in the processes. However, gaps remain in our knowledge about the fundamental information of the bacterial consortia associated with dinoflagellate resting cysts both in laboratory cultures and in the field. Here we used Scrippsiella acuminata as a representative of cyst-producing dinoflagellates to delineate the diversity and composition of bacterial microbiomes co-existing with the laboratory-cultured resting cysts, and to explore possible impacts of low temperature, darkness, and anoxia (the mock conditions commonly observed in marine sediments) on the associated bacterial consortia. Bacterial microbiome with high diversity were revealed associated with S. acuminata at resting stage. The mock conditions could significantly shift bacterial community structure and exert notably inhibitory effects on growth-promoting bacteria. Resting cysts under conditions typically observed in marine sediments fostered bacterial microbiomes with more diverse trophic strategies, characteristic of prominently enriched anaerobic chemotrophic bacteria generating energy via respiration with several different terminal electron acceptors, which yielded more acidic milieu unfavorable for the preservation of calcareous resting cysts. Our findings suggest that there is complex and dynamic interaction between dinoflagellates resting cysts and the associated bacterial consortia in natural sediments. This intrinsic interaction may influence the maintenance and/or accumulation of dinoflagellate resting cysts with potential of germination and initiation blooms in the field.	[Deng, Yunyan; Li, Fengting; Shang, Lixia; Hu, Zhangxi; Yue, Caixia; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Deng, Yunyan; Li, Fengting; Shang, Lixia; Tang, Ying Zhong] Qingdao Marine Sci & Technol Ctr, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Deng, Yunyan; Li, Fengting; Shang, Lixia; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China; [Hu, Zhangxi] Guangdong Ocean Univ, Coll Fisheries, Zhanjiang, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Guangdong Ocean University	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Marine Sci & Technol Ctr, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023		National Science Foundation of China [42176207]; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]; Qingdao Postdoctoral Applied Research Project [QDBSH20220202137]	National Science Foundation of China(National Natural Science Foundation of China (NSFC)); Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences; Qingdao Postdoctoral Applied Research Project	The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This research was financially supported by the National Science Foundation of China (Grant No. 42176207), the Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences (Grant No. COMS2019Q09), and the Qingdao Postdoctoral Applied Research Project (No. QDBSH20220202137).	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JUL 22	2024	15								1407459	10.3389/fmicb.2024.1407459	http://dx.doi.org/10.3389/fmicb.2024.1407459			11	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	A7Q2J	39104580	Green Published, gold			2025-03-11	WOS:001284439000001
J	Aydin, H; Uzar, S; Cingöz, EE; Kücüksezgin, F; Pospelova, V				Aydin, Hilal; Uzar, Serdar; Cingoz, Emine Erdem; Kucuksezgin, Filiz; Pospelova, Vera			Environmental factors influencing the abundance and spatial distribution of modern dinoflagellate cysts in Izmir Bay (Eastern Mediterranean)	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate cyst; Lingulodinium machaerophorum; Eutrophication; Water quality; Izmir Bay; Environmental conditions	RECENT MARINE-SEDIMENTS; SURFACE SEDIMENTS; AEGEAN SEA; TOKYO-BAY; INDUSTRIAL-POLLUTION; COASTAL WATERS; YOKOHAMA-PORT; RESTING CYSTS; BLACK-SEA; ASSEMBLAGES	We analyzed surface sediments from 12 stations located in Izmir Bay to determine the impact of anthropogenic pollution on dinoflagellate cysts. Forty-three dinoflagellate cyst taxa and two cyst assemblage zones were identified. Zone 1 is characterized by the dominance of cysts of Gymnodinium nolleri, , Selenopemphix nephroides, and Operculodinium centrocarpum from the oligotrophic part of Izmir Bay. Zone 2 is in the highly productive inner part of the bay and is characterized by the high abundances of Lingulodinium machaerophorum, , Spiniferites ramosus, , cysts of Scrippsiella spp., cysts of Polykrikos spp. and Quinquecuspis concreta. . We used multivariate statistical analysis (DCA and CCA) on dinoflagellate cysts and environmental variables to support the identification of Zones 1 and 2. Our analyses also revealed that summer and winter chlorophyll-a a as well as elevated nitrate and nitrite concentrations are significant parameters in controlling dinoflagellate cyst distribution in Izmir Bay.	[Aydin, Hilal; Uzar, Serdar; Cingoz, Emine Erdem] Manisa Celal Bayar Univ, Fac Sci & Arts, Biol Dept, TR-45140 Manisa, Turkiye; [Kucuksezgin, Filiz] Dokuz Eylul Univ, Inst Marine Sci, Technol Inst Marine Sci & Technol, TR-35340 Izmir, Turkiye; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, Minneapolis, MN 55455 USA	Celal Bayar University; Dokuz Eylul University; University of Minnesota System; University of Minnesota Twin Cities	Aydin, H (通讯作者)，Manisa Celal Bayar Univ, Fac Sci & Arts, Biol Dept, TR-45140 Manisa, Turkiye.	hilalaydin66@gmail.com	Pospelova, Vera/IXD-6686-2023; Uzar, Serdar/G-9956-2014	Pospelova, Vera/0000-0003-4049-8133	Scientific and Technical Research Council of Turkey (TUBITAK) [113Y006]	Scientific and Technical Research Council of Turkey (TUBITAK)(Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK))	This study was supported by Scientific and Technical Research Council of Turkey (TUBITAK) (Project No. 113Y006) . This study con-tains a part of PhD dissertation prepared by Serdar Uzar in Manisa Celal Bayar University. The authors are grateful to marine chemistry labora-tory of Dokuz Eylul University Institute of Marine Science and Tech-nology performing chemical analysis. The authors also thank to crew of R/VK. Piri Reis for their assistance during fieldwork. Two anonymous reviewers and the associate editor are acknowledged for constructive comments that improved the manuscript.	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Pollut. Bull.	AUG	2024	205								116612	10.1016/j.marpolbul.2024.116612	http://dx.doi.org/10.1016/j.marpolbul.2024.116612		JUL 2024	14	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	I8B5H	38991358				2025-03-11	WOS:001332456400001
J	Fachon, E; Pickart, RS; Sheffield, G; Pate, E; Pathare, M; Brosnahan, ML; Muhlbach, E; Horn, K; Spada, NN; Rajagopalan, A; Lin, PG; McRaven, LT; Lago, LS; Huang, J; Bahr, F; Stockwell, DA; Hubbard, KA; Farrugia, TJ; Lefebvre, KA; Anderson, DM				Fachon, Evangeline; Pickart, Robert S.; Sheffield, Gay; Pate, Emma; Pathare, Mrunmayee; Brosnahan, Michael L.; Muhlbach, Eric; Horn, Kali; Spada, Nathaniel N.; Rajagopalan, Anushka; Lin, Peigen; McRaven, Leah T.; Lago, Loreley S.; Huang, Jie; Bahr, Frank; Stockwell, Dean A.; Hubbard, Katherine A.; Farrugia, Thomas J.; Lefebvre, Kathi A.; Anderson, Donald M.			Tracking a large-scale and highly toxic Arctic algal bloom: Rapid detection and risk communication	LIMNOLOGY AND OCEANOGRAPHY LETTERS			English	Letter							DINOFLAGELLATE ALEXANDRIUM-FUNDYENSE; CHUKCHI SEA; RESTING CYSTS; GEORGES BANK; WEST-COAST; MAINE; ABUNDANCE; GULF; PROFILES; BAY	In recent years, blooms of the neurotoxic dinoflagellate Alexandrium catenella have been documented in Pacific Arctic waters, and the paralytic shellfish toxins (PSTs) that this species produces have been detected throughout the food web. These observations have raised significant concerns about the role that harmful algal blooms (HABs) will play in a rapidly changing Arctic. During a research cruise in summer 2022, a massive bloom of A. catenella was detected in real time as it was advected through the Bering Strait region. The bloom was exceptional in both spatial scale and density, extending > 600 km latitudinally, reaching concentrations > 174,000 cells L-1, and producing high-potency PST congeners. Throughout the event, coastal stakeholders in the region were engaged and a multi-faceted community response was mobilized. This unprecedented bloom highlighted the urgent need for response capabilities to ensure safe utilization of critical marine resources in a region that has little experience with HABs.	[Fachon, Evangeline; Pathare, Mrunmayee; Brosnahan, Michael L.; Horn, Kali; Spada, Nathaniel N.; Rajagopalan, Anushka; Anderson, Donald M.] Woods Hole Oceanog Inst, Biol Dept, Woods Hole, MA 02543 USA; [Fachon, Evangeline] MIT, Dept Earth Atmospher & Planetary Sci, Cambridge, MA 02139 USA; [Pickart, Robert S.; Lin, Peigen; McRaven, Leah T.; Lago, Loreley S.; Huang, Jie; Bahr, Frank] Woods Hole Oceanog Inst, Phys Oceanog Dept, Woods Hole, MA USA; [Sheffield, Gay] Univ Alaska Fairbanks, Marine Advisory Program, Alaska Sea Grant, Nome, AK USA; [Pate, Emma] Norton Sound Hlth Corp, Off Environm Hlth, Nome, AK USA; [Muhlbach, Eric; Hubbard, Katherine A.] Fish & Wildlife Res Inst, Florida Fish & Wildlife Conservat Commiss, St Petersburg, FL USA; [Rajagopalan, Anushka] Northeastern Univ, Coll Sci, Boston, MA USA; [Lin, Peigen] Shanghai Jiao Tong Univ, Sch Oceanog, Shanghai, Peoples R China; [Stockwell, Dean A.] Univ Alaska Fairbanks, Coll Fisheries & Ocean Sci, Fairbanks, AK USA; [Farrugia, Thomas J.] Alaska Ocean Observing Syst, Anchorage, AK USA; [Lefebvre, Kathi A.] NOAA, Environm & Fisheries Sci Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, Seattle, WA USA	Woods Hole Oceanographic Institution; Massachusetts Institute of Technology (MIT); Woods Hole Oceanographic Institution; University of Alaska System; University of Alaska Fairbanks; Florida Fish & Wildlife Conservation Commission; Northeastern University; Shanghai Jiao Tong University; University of Alaska System; University of Alaska Fairbanks; National Oceanic Atmospheric Admin (NOAA) - USA	Fachon, E (通讯作者)，Woods Hole Oceanog Inst, Biol Dept, Woods Hole, MA 02543 USA.; Fachon, E (通讯作者)，MIT, Dept Earth Atmospher & Planetary Sci, Cambridge, MA 02139 USA.	efachon@whoi.edu	Huang, Jie/KCX-8283-2024	Brosnahan, Michael/0000-0002-2620-7638; Huang, Jie/0000-0003-1134-5752; Fachon, Evangeline/0000-0003-2933-7283	NSF Office of Polar Programs [OPP-1823002]; NOAA's Arctic Research program [NA14OAR4320158, NA19OAR4320074]; NOAA Centers for Coastal and Ocean Science (NCCOS) Competitive Research Program [NA20NOS4780195]; NCCOS HAB Event Response Program; Woods Hole Center for Oceans and Human Health (National Science Foundation) [OCE-1840381]; Woods Hole Center for Oceans and Human Health (National Institutes of Health) [NIEHS-1P01-ES028938-01]; National Science Foundation Graduate Research Fellowship [2141064]; North Pacific Research Board Graduate Student Research Award; National Natural Science Foundation of China [42306251]; Shanghai Pujiang Program [22PJ1406400]	NSF Office of Polar Programs(National Science Foundation (NSF)); NOAA's Arctic Research program; NOAA Centers for Coastal and Ocean Science (NCCOS) Competitive Research Program; NCCOS HAB Event Response Program; Woods Hole Center for Oceans and Human Health (National Science Foundation); Woods Hole Center for Oceans and Human Health (National Institutes of Health)(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH Division of Research Services (DRS)); National Science Foundation Graduate Research Fellowship(National Science Foundation (NSF)); North Pacific Research Board Graduate Student Research Award; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Shanghai Pujiang Program(Shanghai Pujiang Program)	We acknowledge the crew and science personnel of the R/V Norseman II cruises. We also thank coastal community leadership as well as community clinicians throughout the Bering Strait region, Northwest Arctic Borough, and North Slope Borough. This work was supported by the NSF Office of Polar Programs (OPP-1823002); NOAA's Arctic Research program (through the Cooperative Institute for the North Atlantic Region [NA14OAR4320158 and NA19OAR4320074]); NOAA Centers for Coastal and Ocean Science (NCCOS) Competitive Research Program (NA20NOS4780195); NCCOS HAB Event Response Program; the Woods Hole Center for Oceans and Human Health (National Science Foundation grant OCE-1840381 and National Institutes of Health grant NIEHS-1P01-ES028938-01). EF received support from National Science Foundation Graduate Research Fellowship Grant No. 2141064; North Pacific Research Board Graduate Student Research Award. PL was supported by the National Natural Science Foundation of China (42306251); Shanghai Pujiang Program (22PJ1406400). The contents of this publication are solely the responsibility of the authors and do not necessarily represent the official views of any funding agency. This is ECOHAB publication number ECO1107.	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Oceanogr. Lett.	FEB	2025	10	1					62	72		10.1002/lol2.10421	http://dx.doi.org/10.1002/lol2.10421		JUL 2024	11	Limnology; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	U6I6X	39925635	gold			2025-03-11	WOS:001268890300001
J	Sixto, M; Riobó, P; Rodriguez, F; Díaz, PA; Figueroa, RI				Sixto, Marta; Riobo, Pilar; Rodriguez, Francisco; Diaz, Patricio A.; Figueroa, Rosa I.			Climate Change Stressors, Phosphate Limitation, and High Irradiation Interact to Increase <i>Alexandrium minutum</i> Toxicity and Modulate Encystment Rates	MICROORGANISMS			English	Article						Alexandrium minutum; light; paralytic shellfish poisoning; harmful algal blooms; pulse amplitude modulation; encystment	TOXIN PRODUCTION; PHOSPHORUS; GROWTH; TEMPERATURE; DINOPHYCEAE; SALINITY; PROFILES; DYNAMICS; BLOOMS; LIGHT	The changes in the cell physiology (growth rate, cell size, and cell DNA content), photosynthetic efficiency, toxicity, and sexuality under variable light and nutrient (phosphates) conditions were evaluated in cultures of the dinoflagellate Alexandrium minutum obtained from a red tide in the Ria de Vigo (NW Spain). The cells were grown at low (40 and 150 mu E m(-2) s(-1)), moderate (400 mu E m(-2) s(-1)), and high (800 mu E m(-2) s(-1)) light intensities in a medium with phosphate (P+) and without (P-). Cultures were acclimated to the irradiance conditions for one week, and the experiment was run for similar to 1 month. The cell size and DNA content were monitored via flow cytometry. Two different clonal strains were employed as a monoculture (in a P- or P+ medium) or, to foster sexuality and resting cyst formation, as a mixed culture (only in a P- medium). A. minutum growth was favored by increasing light intensities until 400 mu E m(-2) s(-1). The DNA content analyses indicated the accumulation of S-phase cells at the highest light intensities (400 and 800 mu E m(-2) s(-1)) and therefore the negative effects on cell cycle progression. Only when the cells were grown in a P- medium did higher light intensities trigger dose-dependent, significantly higher toxicities in all the A. minutum cultures. This result suggests that the toxicity level is responsive to the combined effects of (high) light and (low) P stress. The cell size was not significantly affected by the light intensity or P conditions. The optimal light intensity for resting cyst formation was 150 mu E m(-2) s(-1), with higher irradiances reducing the total encystment yield. Encystment was not observed at the lowest light intensity tested, indicative of the key role of low-level irradiance in gamete and/or zygote formation, in contrast to the stressor effect of excessive irradiance on planozygote formation and/or encystment.	[Sixto, Marta; Rodriguez, Francisco; Figueroa, Rosa I.] Inst Espanol Oceanog IEO CSIC, Ctr Oceanog Vigo, Subida Radio Faro 50-52, Vigo 36390, Spain; [Sixto, Marta] Univ Vigo, Fac Ciencias Mar, Campus Mar, Vigo 36311, Spain; [Riobo, Pilar] Consejo Super Invest Cient IIM CSIC, Inst Invest Marinas, Eduardo Cabello 6, Vigo 36208, Spain; [Diaz, Patricio A.] Univ Lagos, Ctr imar, Casilla 557, Puerto Montt 5480000, Chile; [Diaz, Patricio A.] Univ Lagos, CeBiB, Casilla 557, Puerto Montt 5480000, Chile	Spanish Institute of Oceanography; Universidade de Vigo; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM); Universidad de Los Lagos; Universidad de Los Lagos	Sixto, M; Figueroa, RI (通讯作者)，Inst Espanol Oceanog IEO CSIC, Ctr Oceanog Vigo, Subida Radio Faro 50-52, Vigo 36390, Spain.; Sixto, M (通讯作者)，Univ Vigo, Fac Ciencias Mar, Campus Mar, Vigo 36311, Spain.	sixto.marta@gmail.com; pilarriobo@iim.csic.es; francisco.rodriguez@ieo.csic.es; patricio.diaz@ulagos.cl; rosa.figueroa@ieo.csic.es	; Figueroa, Rosa/M-7598-2015; Rodriguez, Francisco/A-5934-2019; Riobo, Pilar/K-1945-2017; Diaz, Patricio/B-8128-2018	Sixto, Marta/0000-0002-7028-7647; Figueroa, Rosa/0000-0001-9944-7993; Rodriguez, Francisco/0000-0002-6918-4771; Riobo, Pilar/0000-0002-1921-6229; Diaz, Patricio/0000-0002-9403-8151	Spanish project BIOTOX [PID2021-125643OB-C22]; EU-INTERREG Atlantic Area project PRIMROSE [EAPA 182/2016]; GAIN grant GRC-VGOHAB from the Innovation Agency (Xunta de Galicia) [IN607A-2019/04]; CCVIEO culture collection of microalgae (IEO Vigo); Spanish project DIANAS under the RETOS Programme (MINECO) [CTM2017-86066-R]; ANID-FONDECYT [1231220]; Centre for Biotechnology and Bioengineering (CeBiB) (ANID, Chile) [FB0001]	Spanish project BIOTOX; EU-INTERREG Atlantic Area project PRIMROSE(Interreg Europe); GAIN grant GRC-VGOHAB from the Innovation Agency (Xunta de Galicia); CCVIEO culture collection of microalgae (IEO Vigo); Spanish project DIANAS under the RETOS Programme (MINECO); ANID-FONDECYT; Centre for Biotechnology and Bioengineering (CeBiB) (ANID, Chile)	This research was funded by the Spanish project BIOTOX (PID2021-125643OB-C22), the EU-INTERREG Atlantic Area project PRIMROSE (EAPA 182/2016), the GAIN grant GRC-VGOHAB IN607A-2019/04 for the Galician Networks of Excellence from the Innovation Agency (Xunta de Galicia), and the CCVIEO culture collection of microalgae (IEO Vigo). Marta Sixto acknowledges the pre-doctoral contract granted by the Spanish project DIANAS (CTM2017-86066-R) under the RETOS Programme (MINECO). Patricio A. Diaz was funded by the ANID-FONDECYT 1231220 and by the Centre for Biotechnology and Bioengineering (CeBiB) (PIA project FB0001, ANID, Chile).	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J	García-Moreiras, I; Amorim, A; Zonneveld, K				Garcia-Moreiras, Iria; Amorim, Ana; Zonneveld, Karin			Transport and preservation of calcareous and organic-walled dinoflagellate cysts off Cape Blanc (NW africa) in relation to nepheloid layers	MARINE ENVIRONMENTAL RESEARCH			English	Article						Dinoflagellate cysts; Organic-walled cysts; Calcareous cysts; Nepheloid layers; Advection; Offshore environments; NW African upwelling	SURFACE SEDIMENTS; GYMNODINIUM-CATENATUM; UPWELLING SYSTEM; PARTICLE DISTRIBUTION; ENVIRONMENTAL-CHANGE; MARINE-SEDIMENTS; ATLANTIC-OCEAN; RESTING STAGES; ARABIAN SEA; DINOPHYCEAE	Our understanding of dinoflagellates' present-day and past ecology is limited due to the scarcity of data on the transport of dinoflagellate cysts in oceanic environments. Previous studies have shown that lateral transport affects the source-to-sink trajectory of cysts in the very productive region off Cape Blanc (NW Africa). Unsolved questions remain, such as: how far these cysts can be advected, whether the cyst sources vary over time and whether lateral transport is a permanent feature or restricted to individual events. To fill these gaps and assess the role of nepheloid layers on the lateral transport and preservation of dinoflagellate cysts, new data on dinoflagellate cyst distributions in the water column and sediments along a land-sea transect were obtained. Samples were collected in November 2018 along a shelf break-offshore transect during intense upwelling, notably, within and between the nepheloid layers. The composition and abundance of cysts with organic walls in the water column and surface sediments were studied. Moreover, the distribution of calcareous cysts was also analysed in the water samples, using non-destructive acid-free preparation methods. The records were dominated by empty cysts, but no clear indications that these originated from local resuspension of older sediments were observed. Clustering, principal component analysis and redundant discriminant analysis were used to compare cyst assemblages in the water column and surface sediments, and environmental conditions in the upper water column. The strong similarity in species composition of water samples collected in the active upwelling region to those collected from the more onshore parts of the Benthic Nepheloid Layer (BNL), upper Intermediate Nepheloid Layer (INL) (similar to 1000 m depth) and lower INL (similar to 2200 m depth) indicated that lateral transport of cysts within these NLs occurred until about similar to 110 km from the shelf break. Cyst assemblages from above and below these NLs showed significantly different taxa composition reinforcing the role of NLs in the lateral advection of cysts. In the more offshore stations, vertically similar cyst assemblages were observed in the same station, independent of the sample depth, within or between the NLs, which supported that at these stations vertical transport was the dominant process influencing cyst assemblages. Consequently, the cyst signal in sediments off Cape Blanc may be affected both by horizontal transport of allochthonous cysts and vertical deposition of locally-produced cysts, particularly in the more offshore stations (>2000 m depth). Despite lateral transport and possible species-specific preservation effects, horizontal distributions of most cyst taxa in the water column and the surface sediments could be explained to a great extent by the main environmental gradients in the upper water column. This agrees with observations made in other regions, and reinforces that dinoflagellate cysts as good proxies to reconstruct past environmental conditions in offshore environments. New data on dinoflagellate cyst distribution, transport and accumulation patterns in deep environments off Cape Blanc may be useful for interpreting past environmental signals in the region. This is particularly relevant regarding calcareous cysts, as information on their distribution and ecology is very scarce. The present work contributes to a better understanding of the dispersal patterns of dinoflagellate cysts in the deep ocean, highlighting the significant role played by nepheloid layers in this process and thus on the dinoflagellate cyst signature in deep-sea sediments.	[Garcia-Moreiras, Iria] Univ Vigo, Ctr Invest Marina CIM, Fac Ciencias, Campus As Lagas Marcosende, Vigo 36310, Spain; [Garcia-Moreiras, Iria] Univ Vigo, Dept Biol Vexetal & Ciencias Solo, Vigo 36310, Spain; [Amorim, Ana] Univ Lisbon, Fac Ciencias, Ctr Ciencias Mar & Ambiente MARE, Aquat Res Network ARNET, P-1749016 Lisbon, Portugal; [Amorim, Ana] Univ Lisbon, Fac Ciencias, Dept Biol Vegetal, P-1749016 Lisbon, Portugal; [Zonneveld, Karin] Zentrum Marine Umweltwissensch Univ Bremen MARUM, Leobener Str 8, D-28359 Bremen, Germany; [Zonneveld, Karin] Univ Bremen, Geosci Dept, Klagenfurter Str, D-28359 Bremen, Germany	Universidade de Vigo; Universidade de Vigo; Universidade de Lisboa; Universidade de Lisboa; University of Bremen	García-Moreiras, I (通讯作者)，Univ Vigo, Ctr Invest Marina CIM, Fac Ciencias, Campus As Lagas Marcosende, Vigo 36310, Spain.	iriagamo@uvigo.es	GARCIA-MOREIRAS, IRIA/H-4627-2015	GARCIA-MOREIRAS, IRIA/0000-0001-8713-0374	Deutsche Forschungsgemeinschaft, Germany [Mer/Met: 17-87]; Xunta de Galicia, Spain [ED481B-2019-074]; FCT: Fundacao para a Ciencia e a Tecnologia (Portugal) [UIDB/04292/2020, UIDP/04292/2020, LA/P/0069/2020]; Universidade de Vigo/CISUG, Spain	Deutsche Forschungsgemeinschaft, Germany(German Research Foundation (DFG)); Xunta de Galicia, Spain(Xunta de Galicia); FCT: Fundacao para a Ciencia e a Tecnologia (Portugal)(Fundacao para a Ciencia e a Tecnologia (FCT)); Universidade de Vigo/CISUG, Spain	This work was a contribution to the project: Marine carbon pro- duction, export, relocation and degradation under varying ocean redox conditions off NW Africa (MACPEI), funded by the Deutsche Forschungsgemeinschaft [Mer/Met: 17-87] , Germany. Iria Garcia-Moreiras was supported by a postdoctoral fellowship from Xunta de Galicia (ED481B-2019-074, 2019), Spain. Ana Amorim was supported by FCT: Fundacao para a Ciencia e a Tecnologia (Portugal) through the strategic projects UIDB/04292/2020 and UIDP/04292/2020 awarded to MARE and through project LA/P/0069/2020 granted to the Associate Laboratory ARNET". Funding for open access charge was provided by Universidade de Vigo/CISUG, Spain. We would also like to thank the two anonymous reviewers for their insightful comments and suggestions.	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JUL	2024	199								106577	10.1016/j.marenvres.2024.106577	http://dx.doi.org/10.1016/j.marenvres.2024.106577		JUN 2024	23	Environmental Sciences; Marine & Freshwater Biology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Toxicology	WL8P6	38878348	hybrid			2025-03-11	WOS:001255119300001
J	Hansen, G; Tolstrup, L; Petersen, G; Maguet, R; Madsen, T				Hansen, Gert; Tolstrup, Lea; Petersen, Gitte; Maguet, Remi; Madsen, Torben			Viability assessed with the most probable number dilution culture method after chemical treatment of ballast water reveals the presence of false negatives from an approved vital stain method	MARINE POLLUTION BULLETIN			English	Article						Ballast water; Chlorination; BWMS; CMFDA/FDA; MPN; Vital stain	EXAMINE DNA CONCENTRATION; CELL-PROLIFERATION ASSAY; VIABLE PHYTOPLANKTON; APPLICABILITY; UV; ORGANISMS; TRANSPORT; CYSTS	The present study compares the CMFDA/FDA + motility- and the Most Probable Number (MPN) Dilution Culture + Motility methods for testing the viability of >= 10-<50 mu m organisms in chlorine treated ballast water. The results of both methods were within the regulatory compliance criterion <10 organisms/mL, but the MPNmethod revealed that growth-outs did occur. While the CMFDA/FDA method showed <0.5 organisms/mL, the MPN-method gave approx. 6 organisms/mL. This demonstrated that false negatives, i.e. living but not stained organisms, may occur when using the CMFDA/FDA-method for compliance testing of chemical treated ballast water. Organisms surviving the treatment were primarily the dinoflagellate Scrippsiella sp. and various coccoid chlorophytes present in a brackish- and freshwater test, respectively. It is suggested that their resilience to the chemical treatment is the ability to transform into a temporary cyst (Scrippsiella sp.) or the presence of a chemical resistant cell wall (certain chlorophytes).	[Hansen, Gert; Tolstrup, Lea; Petersen, Gitte; Madsen, Torben] DHI, Agern Alle 5, DK-2970 Horsholm, Denmark; [Hansen, Gert] Univ Copenhagen, Dept Biol, Marine Biol Sect, Univ Pk 4, DK-2100 Copenhagen O, Denmark	Danish Hydraulic Institute (DHI); University of Copenhagen	Hansen, G (通讯作者)，DHI, Agern Alle 5, DK-2970 Horsholm, Denmark.	geha@dhigroup.com						[Anonymous], 2012, Federal Register, V77; [Anonymous], 2004, International Convention for the Control and Management of Ships' Ballast Water and Sediments; Batista WR, 2017, ENVIRONMENTS, V4, DOI 10.3390/environments4030054; Beddow D.G., 1966, Master Thesis; BENTLEYMOWAT JA, 1982, BOT MAR, V25, P203; Blatchley ER, 2018, ENVIRON SCI TECHNOL, V52, P8075, DOI 10.1021/acs.est.8b00341; Bravo I, 2010, DEEP-SEA RES PT II, V57, P166, DOI 10.1016/j.dsr2.2009.09.003; Casas-Monroy O, 2016, J APPL PHYCOL, V28, P2821, DOI 10.1007/s10811-016-0798-3; Cullen J.J., 2019, Zenodo, DOI [10.5281/zenodo.2656597, DOI 10.5281/ZENODO.2656597]; Cullen JJ, 2018, SCI TOTAL ENVIRON, V627, P1602, DOI 10.1016/j.scitotenv.2018.01.302; Cullen JJ, 2016, J APPL PHYCOL, V28, P279, DOI 10.1007/s10811-015-0601-x; Dang K., 2004, GloBallast Monograph Series, V15, P103; EPA, 2010, EPA600R10146 NSF INT; Fistarol GO, 2004, ENVIRON MICROBIOL, V6, P791, DOI 10.1111/j.1462-2920.2004.00609.x; Frazier M, 2013, ECOL APPL, V23, P339, DOI 10.1890/11-1639.1; Garvey M, 2007, MAR ECOL PROG SER, V352, P17, DOI 10.3354/meps07134; Gregg Matthew, 2009, Aquatic Invasions, V4, P521, DOI 10.3391/ai.2009.4.3.14; Guney Ceren Bilgin, 2022, Marine Science and Technology Bulletin, V11, P397, DOI 10.33714/masteb.1162688; HALLEGRAEFF GM, 1992, J PLANKTON RES, V14, P1067, DOI 10.1093/plankt/14.8.1067; HALLEGRAEFF GM, 1991, MAR POLLUT BULL, V22, P27, DOI 10.1016/0025-326X(91)90441-T; Hansen G., 2018, SUSSWASSERFLORA MITT, VXII, P39; Hansen G., 2023, Mar. 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Pollut. Bull.	AUG	2024	205								116586	10.1016/j.marpolbul.2024.116586	http://dx.doi.org/10.1016/j.marpolbul.2024.116586		JUN 2024	7	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	WM0Z5	38878418				2025-03-11	WOS:001255181800001
J	Zheng, XM; Lin, L; Xue, MY; Wang, Q; Wang, J; Wu, HX				Zheng, Xuming; Lin, Ling; Xue, Muyang; Wang, Qiong; Wang, Jian; Wu, Huixian			Study on the diversity and germination of dinoflagellate cysts in the sediments of foreign ships in Shanghai Port	MARINE POLLUTION BULLETIN			English	Article						Ballast water; Dinoflagellate cyst; Germination; Shanghai Port; Sediments in ports	BALLAST WATER; RESTING CYSTS; TRANSPORT; VIABILITY; VESSELS; COAST	The dinoflagellate cysts present in the ballast water sediment of foreign ships in Shanghai Port have not been previously studied. Therefore, sediment samples were collected from the ballast water of 16 foreign ships in Shanghai Port, and the types of dinoflagellate cysts were identified and their abundance was calculated, with a specific focus on the analysis of toxic and harmful dinoflagellates. Moreover, simulations of temperature and salinity conditions throughout the year in the Shanghai port waters were conducted to carry out dinoflagellate cyst germination experiments, with analyze and compare the germinated dinoflagellate cysts under different conditions. Dinoflagellate cysts were found in 100 % of the ship sediment samples, including a total of 9 species of toxic and harmful dinoflagellate cysts. In the germination experiment, 15 degrees C was found to be the optimal temperature for the germination of dinoflagellate cysts in ballast water sediment, and high salinity is more favorable for cyst germination.	[Zheng, Xuming; Lin, Ling; Wang, Qiong; Wu, Huixian] Shanghai Ocean Univ, Coll Oceanog & Ecol Sci, 999th Huchenghuan Rd, Shanghai 201306, Peoples R China; [Xue, Muyang; Wu, Huixian] Hong Kong Univ Sci & Technol, Kowloon, Clear Water Bay, Hong Kong 999077, Peoples R China; [Lin, Ling; Wang, Jian] Cosco Shipping Heavy Ind Technol Weihai Co Ltd, Weihai 264203, Peoples R China	Shanghai Ocean University; Hong Kong University of Science & Technology	Wu, HX (通讯作者)，Shanghai Ocean Univ, Coll Oceanog & Ecol Sci, 999th Huchenghuan Rd, Shanghai 201306, Peoples R China.	hxwu@shou.edu.cn	Wu, Huixian/N-6353-2014					Bailey SA, 2003, LIMNOL OCEANOGR, V48, P1701, DOI 10.4319/lo.2003.48.4.1701; Casas-Monroy O, 2011, AQUAT INVASIONS, V6, P231, DOI 10.3391/ai.2011.6.3.01; Hallegraeff GM, 1998, MAR ECOL PROG SER, V168, P297, DOI 10.3354/meps168297; Hamer JP, 2001, PHYCOLOGIA, V40, P246, DOI 10.2216/i0031-8884-40-3-246.1; Hofmann EE, 2021, HARMFUL ALGAE, V107, DOI 10.1016/j.hal.2021.102064; Hulsmann N., 2002, Protists-A Dominant Component of the BallastTransported Biota, DOI [10.1007/978-94-015-9956-63, DOI 10.1007/978-94-015-9956-63]; Karlson B, 2021, HARMFUL ALGAE, V102, DOI 10.1016/j.hal.2021.101989; Kim YO, 2002, AQUAT MICROB ECOL, V29, P279, DOI 10.3354/ame029279; Kremp A, 2000, J PLANKTON RES, V22, P1311, DOI 10.1093/plankt/22.7.1311; Li Dacheng, 2019, Fisheries Science (Liaoning), V38, P545; Li DR, 2023, OCEAN COAST MANAGE, V234, DOI 10.1016/j.ocecoaman.2022.106474; McQuoid MR, 2002, EUR J PHYCOL, V37, P191, DOI 10.1017/S0967026202003670; Pertola S, 2006, MAR POLLUT BULL, V52, P900, DOI 10.1016/j.marpolbul.2005.11.028; Ricciardi A, 2000, TRENDS ECOL EVOL, V15, P62, DOI 10.1016/S0169-5347(99)01745-0; Ruiz GM, 2000, NATURE, V408, P49, DOI 10.1038/35040695; Shen Renjie, 2017, China Manag. Inform., V20, P115; Su Yuping, 2015, Acta Ecol. Sin., V36, P2875, DOI [10.13671/j.hjkxxb.2014.1082, DOI 10.13671/J.HJKXXB.2014.1082]; Wang Dou, 2019, Mar. Econ., V9, P29, DOI [10.19426/j.cnki.cn12-1424/p.2019.01.004, DOI 10.19426/J.CNKI.CN12-1424/P.2019.01.004]; Xiang JY, 2023, MANAG BIOL INVASION, V14, P178, DOI 10.3391/mbi.2023.14.1.10	19	0	0	6	11	PERGAMON-ELSEVIER SCIENCE LTD	OXFORD	THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND	0025-326X	1879-3363		MAR POLLUT BULL	Mar. Pollut. Bull.	AUG	2024	205								116566	10.1016/j.marpolbul.2024.116566	http://dx.doi.org/10.1016/j.marpolbul.2024.116566		JUN 2024	10	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	WT0I3	38875971				2025-03-11	WOS:001257003200001
J	Li, RX; Deng, YY; Shang, LX; Liu, YY; Tao, Z; Chai, ZY; Tang, YZ				Li, Ruoxi; Deng, Yunyan; Shang, Lixia; Liu, Yuyang; Tao, Zhe; Chai, Zhaoyang; Tang, Ying Zhong			Evidence for the production of asexual resting cysts in a free-living species of Symbiodiniaceae (Dinophyceae)	HARMFUL ALGAE			English	Article						Asexual resting cyst; Effrenium voratum; Fluorescence in situ hybridization (fish); Life cycle; Single -cyst PCR sequencing	ALEXANDRIUM DINOPHYCEAE; PHYLOGENETIC ANALYSIS; GONYAULAX-TAMARENSIS; CORAL-REEFS; LIFE-CYCLE; DINOFLAGELLATE; IDENTIFICATION; ZOOXANTHELLAE; MORPHOLOGY; CARBON	Coral reef ecosystems are the most productive and biodiverse marine ecosystems, with their productivity levels highly dependent on the symbiotic dinoflagellates belonging to the family Symbiodiniaceae. As a unique life history strategy, resting cyst production is of great significance in the ecology of many dinoflagellate species, those HABs-causing species in particular, however, there has been no confirmative evidence for the resting cyst production in any species of the family Symbiodiniaceae. Based on morphological and life history observations of cultures in the laboratory and morpho-molecular detections of cysts from the marine sediments via fluorescence in situ hybridization (FISH), cyst photography, and subsequent singe -cyst PCR sequencing, here we provide evidences for the asexual production of resting cysts by Effrenium voratum , the free-living, red tide -forming, and the type species of the genus Effrenium in Symbiodiniaceae. The evidences from the marine sediments were obtained through a sequential detections: Firstly, E. voratum amplicon sequence variants (ASVs) were detected in the cyst assemblages that were concentrated with the sodium polytungstate (SPT) method from the sediments collected from different regions of China Seas by high -throughput next generation sequencing (NGS); Secondly, the presence of E. voratum in the sediments was detected by PCR using the species -specific primers for the DNA directly extracted from sediment; Thirdly, E. voratum cysts were confirmed by a combined approach of FISH using the species -specific probes, light microscopic (LM) photography of the FISH -positive cysts, and a subsequent single -cyst PCR sequencing for the FISH -positive and photographed cysts. The evidences from the laboratory -reared clonal cultures of E. voratum include that: 1) numerous cysts formed in the two clonal cultures and exhibited a spherical shape, a smooth surface, absence of ornaments, and a large red accumulation body; 2) cysts could maintain morphologically intact for a storage of two weeks to six months at 4 degrees C in darkness and of which 76 -92 % successfully germinated through an internal development processes within a time period of 3 -21 days after being transferred back to the normal culturing conditions; 3) two or four germlings were released from each cyst through the cryptopylic archeopyle in all cysts with continuous observations of germination processes; and 4) while neither sexual mating of gametes nor planozygote (cells with two longitudinal flagella) were observed, the haploidy of cysts was proven with flow cytometric measurements and direct LM measurements of fluorescence from cells stained with either propidium iodide (PI) or DAPI, which together suggest that the cysts were formed asexually. All evidences led to a conclusion that E. voratum is capable of producing asexual resting cysts, although its sexuality cannot be completely excluded, which guarantees a more intensive investigation. This work fills a gap in the knowledge about the life cycle, particularly the potential of resting cyst formation, of the species in Symbiodiniaceae, a group of dinoflagellates having unique life forms and vital significance in the ecology of coral reefs, and may provide novel insights into understanding the recovery mechanisms of coral reefs destructed by the global climate change and suggest various forms of resting cysts in the cyst assemblages of dinoflagellates observed in the field sediments, including HABs-causing species.	[Li, Ruoxi; Deng, Yunyan; Shang, Lixia; Liu, Yuyang; Tao, Zhe; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci Qingdao, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Deng, Yunyan; Shang, Lixia; Tang, Ying Zhong] Qingdao Marine Sci & Technol Ctr, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China; [Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Li, Ruoxi; Tao, Zhe] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Chai, ZY; Tang, YZ (通讯作者)，Chinese Acad Sci Qingdao, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Marine Sci & Technol Ctr, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China.; Chai, ZY; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	zhaoyangchai@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	Tao, Zhe/LIG-2380-2024; Chai, Zhaoyang/F-7485-2017; Li, Ruoxi/GWN-1740-2022; Li, Yang/KFB-5350-2024		Field Stations of the Chinese Academy of Science [KFJ-SW-YW047]	Field Stations of the Chinese Academy of Science	We are grateful of Dr. Zhangxi Hu for the collection of sediment samples, Professor Ning Xu from Jinan University, Guangzhou, China, for the provision of the culture SJNU, and the two anonymous re-viewers' constructive comments and suggestions for our work. This research was supported by the Science and Technology Innovation Project of Laoshan Laboratory (Grant No. LSKJ202203700) , the Science & Technology Basic Resources Investigation Program of China (Grant No. 2018FY100200) , and the Key Research Infrastructures in the CAS Field Stations of the Chinese Academy of Science (Grant No. KFJ-SW-YW047) .r Field Stations of the Chinese Academy of Science (Grant No. KFJ-SW-YW047) .	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J	Dzhembekova, N; Zlateva, I; Rubino, F; Belmonte, M; Doncheva, V; Popov, I; Moncheva, S				Dzhembekova, Nina; Zlateva, Ivelina; Rubino, Fernando; Belmonte, Manuela; Doncheva, Valentina; Popov, Ivan; Moncheva, Snejana			Spatial distribution models and biodiversity of phytoplankton cysts in the Black Sea	NATURE CONSERVATION-BULGARIA			English	Article						Black Sea; cyst assemblages; habitat suitability; harmful algal blooms; MaxEnt; potentially toxic phytoplankton	SURFACE SEDIMENTS; DINOFLAGELLATE CYSTS; MAXIMUM-ENTROPY; ENVIRONMENTAL-FACTORS; SPECIES DISTRIBUTION; RESTING STAGES; WEST-COAST; BAY; ALEXANDRIUM; ASSEMBLAGES	The current study employed diverse statistical and machine learning techniques to investigate the biodiversity and spatial distribution of phytoplankton cysts in the Black Sea. The MaxEnt distribution modeling technique was used to forecast the habitat suitability for the cysts of three potentially toxic microalgal taxa (Lingulodinium polyedra, Polykrikos hartmannii, and Alexandrium spp.). The key variables controlling the habitat suitability of Alexandrium spp. and L. polyedra were nitrates and temperature, while for the P. hartmannii cysts, nitrates and salinity. The region with the highest likelihood of L. polyedra cyst occurrence appears to be in the western coastal and shelf waters, which coincides with the areas where L. polyedra red tides have been documented. The projected habitat suitability of the examined species partially overlapped, perhaps as a result of their cohabitation within the phytoplankton community and shared preferences for specific environmental conditions, demonstrating similar survival strategies. The nor th-western region of the Black Sea was found to be the most suitable environment for the studied potentially toxic species, presumably posing a greater risk for the onset of blooming events. Two distinct aspects of cysts' ecology and settlement were observed: the dispersal of cysts concerns their movement within the water column from one place to another prior to settling, while habitat suitability pertains to the particular environment required for their survival, growth, and germination. Therefore, it is crucial to validate the model in order to accurately determine a suitable habitat as well as understand the transportation patterns linked to the particular hydrodynamic properties of the water column and the distinct features of the local environment.	[Dzhembekova, Nina; Zlateva, Ivelina; Doncheva, Valentina; Popov, Ivan; Moncheva, Snejana] Bulgarian Acad Sci, Inst Oceanol Fridtjof Nansen, Parvi May 40, Varna, Bulgaria; [Rubino, Fernando; Belmonte, Manuela] Natl Res Council CNR IRSA, Water Res Inst, Via Roma 3, I-74123 Taranto, Italy	Bulgarian Academy of Sciences; Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR)	Zlateva, I (通讯作者)，Bulgarian Acad Sci, Inst Oceanol Fridtjof Nansen, Parvi May 40, Varna, Bulgaria.	ibikarska@yahoo.com	BELMONTE, MANUEL/LOR-8246-2024; Rubino, Fernando/GOP-0332-2022; Popov, Ivan/AFR-1234-2022; Dzhembekova, Nina/HTN-3019-2023; Belmonte, Manuel/H-1845-2015	Popov, Ivan/0000-0002-2012-3628; Dzhembekova, Nina/0000-0001-9620-6422; Rubino, Fernando/0000-0003-2552-2510; Belmonte, Manuel/0000-0001-6668-6920	National Science Fund, Ministry of Education and Science (MES), Bulgaria [DN01/8]; Ministry of Education and Sciences of Bulgaria through the National Roadmap for Scientific Infrastructure [D01-164/28.07.2022]	National Science Fund, Ministry of Education and Science (MES), Bulgaria; Ministry of Education and Sciences of Bulgaria through the National Roadmap for Scientific Infrastructure	This study was supported by the National Science Fund, Ministry of Education and Science (MES), Bulgaria, under the project "Phytoplankton cysts: an intricacy between a "memory" or a "potential" for Black Sea biodiversity and algal blooms" (Grant number DN01/8, 16.12.2016) and by the Contract No D01-164/28.07.2022 (project "National Geoinformation Center (NGIC) " financed by the Ministry of Education and Sciences of Bulgaria through the National Roadmap for Scientific Infrastructure 2020-2027.	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Conserv.-Bulgaria	JUN 4	2024		55					269	296		10.3897/natureconservation.55.121181	http://dx.doi.org/10.3897/natureconservation.55.121181			28	Biodiversity Conservation	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation	XJ2S6		gold			2025-03-11	WOS:001261257300001
J	Shang, XM; Yang, S; Sun, J				Shang, Xiaomei; Yang, Shuang; Sun, Jun			Succession of phytoplankton communities from macro-scale to micro-scale in coastal waters of Qinhuangdao, China	FRONTIERS IN MARINE SCIENCE			English	Article						scallop farming; phytoplankton community; cryptophytes; dinoflagellate cysts; 18S rRNA	ALEXANDRIUM-MINUTUM DINOPHYCEAE; DINOFLAGELLATE CYST; RECENT SEDIMENTS; RIVER ESTUARY; ALGAL BLOOMS; RED TIDES; CRYPTOPHYCEAE; ABUNDANCE; NUTRIENTS; GROWTH	The coastal area of Qinhuangdao, particularly the Changli Gold Coast Nature Reserve, is experiencing ecological degradation and frequent Harmful Algal Blooms (HABs). This study focuses on the changing phytoplankton communities in these coastal waters, examining them from both a macroscopic and microscopic perspective. Utilizing microscopy, molecular techniques, and pigment analysis, seasonal shifts were observed, with diatoms predominating in June and July, and dinoflagellates in August. Our morphological examination enabled the classification of 89 species into four distinct groups. The species Paralia sulcata and Pseudo-nitzschia pungens were most abundant in early summer, while Tripos furca, a dinoflagellate, dominated in August. This indicates a shift in phytoplankton communities due to environmental factors such as phosphate deficiency and high nitrogen/phosphorus ratios. Additionally, the study notes the impact of reduced river runoff and reintroduction of scallop farming contributing to nitrogen-rich eutrophication in August. Molecular analysis revealed a disparity between microscopic observations and the prevalence of Teleaulax blooms during early summer. Elevated concentrations of TN and DOC, coupled with limited water exchange, emerged as primary factors contributing to their occurrence. Sediment analysis revealed a high diversity but low abundance of dinoflagellates in August, with a significant presence of harmful species. The study highlights the shift from diatoms to harmful dinoflagellate populations, exacerbated by eutrophication and pollution, leading to HABs. These findings provide a theoretical basis for understanding toxic algal blooms and are crucial for environmental agencies in developing strategies to protect and sustainably develop offshore environments.	[Shang, Xiaomei; Yang, Shuang; Sun, Jun] Tianjin Univ Sci & Technol, Res Ctr Indian Ocean Ecosyst, Tianjin, Peoples R China; [Sun, Jun] China Univ Geosci Wuhan, Coll Marine Sci & Technol, Wuhan, Hubei, Peoples R China	Tianjin University Science & Technology; China University of Geosciences	Sun, J (通讯作者)，Tianjin Univ Sci & Technol, Res Ctr Indian Ocean Ecosyst, Tianjin, Peoples R China.; Sun, J (通讯作者)，China Univ Geosci Wuhan, Coll Marine Sci & Technol, Wuhan, Hubei, Peoples R China.	phytoplankton@163.com	Sun, Jun/A-5254-2009		Natural Science Foundation of China [42206087, 41676112]; Changjiang Scholar Program of Chinese Ministry of Education [T2014253]	Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Changjiang Scholar Program of Chinese Ministry of Education	This work was supported by the Natural Science Foundation of China (No. 42206087, 41676112) and the Changjiang Scholar Program of Chinese Ministry of Education (T2014253) to JS. We also thank our colleagues from Dr. Guicheng Zhang and Dr. Dai Jia at Tianjin University of Science and Technology who provided helps on water sampling.	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Mar. Sci.	JUN 4	2024	11								1371196	10.3389/fmars.2024.1371196	http://dx.doi.org/10.3389/fmars.2024.1371196			10	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	UM4K6		gold			2025-03-11	WOS:001248462500001
J	Prego, R; Bao, R; Varela, M; Carballeira, R				Prego, Ricardo; Bao, Roberto; Varela, Manuel; Carballeira, Rafael			Naturally and Anthropogenically Induced <i>Lingulodinium polyedra</i> Dinoflagellate Red Tides in the Galician Rias (NW Iberian Peninsula)	TOXINS			English	Article						harmful algal bloom; oceanography; bottom-up regulation; cysts; dinoflagellates; human impact; dredging; Galicia	HARMFUL ALGAL BLOOMS; SEASONAL-VARIATIONS; SHELF NW; A-CORUNA; PHYTOPLANKTON; CYSTS; HYDROGRAPHY; DINOPHYCEAE; VARIABILITY; ENCYSTMENT	Despite the fact that the first red tide reported on the coasts of the Iberian Peninsula was due to Lingulodinium polyedra, knowledge about their frequency and, particularly, about the environmental conditions contributing to bloom initiation is still scarce. For this reason, L. polyedra bloom episodes were observed and studied in three Galician rias during the summer season based on the 1993-2008 record database period; additionally, samples were collected in summer 2008. Proliferations of L. polyedra occurred in the rias of Ares and Barqueiro in June and August, respectively, while in the Ria of Coru & ntilde;a, they persisted from the end of June to early September. Red tides developed when the surface temperature reached 17 degrees C, with "seasonal thermal window" conditions, and when salinities were >= 30, i.e., an "optimal salinity window"; when these parameters were lower than these thresholds, cyst germination decreased. A cyst transport mechanism from sediments to the surface must also exist; this mechanism was found to be natural (tidal currents) in the ria of Barqueiro or anthropogenic (dredging) in the rias of Ares and Coru & ntilde;a. Surface temperatures during summer were usually favorable for cyst germination (85 to 100%) during the 1993-2008 period; however, water temperatures below 10 m depth only rarely reached the 17 degrees C threshold (2 to 18%). During this 16-year period, dredging activities could explain 71% (Coru & ntilde;a) and 44% (Ares) of the recorded bloom events. When a bloom episode developed in early summer, favorable conditions did not lead to a new red tide, probably due to the lag period required by cysts for germination. Moreover, blooms did not develop when high densities of diatoms (>1,000,000 cells<middle dot>L-1) remained in the water column as a result of summer upwelling pulses occurring in specific years. The temperature-sediment disturbance pattern found in this study provides a useful tool for the prevention of eventual risks resulting from red tides of this dinoflagellate.	[Prego, Ricardo] CSIC, Inst Invest Marinas IIM, Eduardo Cabello 6, Vigo 36208, Spain; [Bao, Roberto] Univ A Coruna, Ctr Interdisciplinar Quim & Biol CICA, GRICA Grp, Rua Carballeiras, La Coruna 15071, Spain; [Varela, Manuel] Inst Espanol Oceanog, Ctr Oceanog A Coruna, Apdo 130, E-15080 La Coruna, Spain; [Carballeira, Rafael] Univ Valencia, Inst Cavanilles Biodiversitat & Biol Evolut ICBiBE, C Catedrat Jose Beltran 2, Paterna 46980, Spain	Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM); Universidade da Coruna; Centro interdisciplinar de Quimica e Bioloxia CICA; Spanish Institute of Oceanography; University of Valencia	Carballeira, R (通讯作者)，Univ Valencia, Inst Cavanilles Biodiversitat & Biol Evolut ICBiBE, C Catedrat Jose Beltran 2, Paterna 46980, Spain.	prego@iim.csic.es; roberto.bao@udc.es; manuel.varela@co.ieo.es; rafael.carballeira@uv.es	Prego, Ricardo/H-4169-2012; Bao, Roberto/D-4092-2009; Carballeira, Rafael/CAJ-1467-2022	Prego, Ricardo/0000-0001-8922-6775; Bao, Roberto/0000-0002-2928-2836; Carballeira, Rafael/0000-0002-2807-6942	INTERESANTE project of the Comision Interministerial de Ciencia y Tecnologia (CICYT) of the Spanish Government [CTM2007-62546-C03/MAR]	INTERESANTE project of the Comision Interministerial de Ciencia y Tecnologia (CICYT) of the Spanish Government	This research was funded by the INTERESANTE project of the Comision Interministerial de Ciencia y Tecnologia (CICYT) of the Spanish Government, grant number CTM2007-62546-C03/MAR.	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J	Manic, DC; Redil, RD; Rodriguez, IB				Manic, Dolly C.; Redil, Richard D.; Rodriguez, Irene B.			Trace Metals in Phytoplankton: Requirements, Function, and Composition in Harmful Algal Blooms	SUSTAINABILITY			English	Review						metal bioavailability; toxin production; nutrient limitation; harmful algal bloom dynamics; metal contamination; metal-phytoplankton feedback interaction	DOMOIC ACID PRODUCTION; DINOFLAGELLATE ALEXANDRIUM-CATENELLA; PSEUDO-NITZSCHIA-MULTISERIES; DISSOLVED ORGANIC-MATTER; DIATOM SYNEDRA-ACUS; SAN-FRANCISCO BAY; C-N-P; MICROCYSTIS-AERUGINOSA; NORTH-ATLANTIC; MARINE-PHYTOPLANKTON	In a constantly changing environment brought about by the climate crisis and escalated anthropogenic perturbations driven by the growing population, harmful algal bloom dynamics and their impacts are expected to shift, necessitating adaptive management strategies and comprehensive research efforts. Similar to primary productivity, HABs have been thought to be driven primarily by major nutrients such as N, P, and Si. However, recent investigations on the role and importance of micronutrients as limiting factors in aquatic environments have been highlighted. This paper provides a review of metal and phytoplankton interactions, with a specific emphasis on pertinent information on the influence of trace nutrients on growth, toxin production, and other underlying mechanisms related to the dynamics of HABs. Low to near-depleted levels of essential nutrients, including Fe, Cu, Zn, Se, Mn, Co, and Mo, negatively impact cell growth and proliferation of various marine and freshwater HAB species. However, evidence shows that at elevated levels, these trace elements, along with other non-essential ones, could still cause toxic effects to certain HAB species manifested by decreased photosynthetic activities, oxidative stress, ultrastructure damage, and cyst formation. Interestingly, while elevated levels of these metals mostly result in increased toxin production, Co (i.e., yessotoxins, gymnodimine, and palytoxins) and Mn (i.e., isodomoic acid, okadaic and diol esters) enrichments revealed otherwise. In addition to toxin production, releasing dissolved organic matter (DOM), including dissolved organic carbon (DOC) and humic substances, was observed as an adaptation strategy, since these organic compounds have been proven to chelate metals in the water column, thereby reducing metal-induced toxicity. Whilst current research centers on free metal toxicity of specific essential elements such as Cu and Zn, a comprehensive account of how trace metals contribute to the growth, toxin production, and other metabolic processes under conditions reflective of in situ scenarios of HAB-prone areas would yield new perspectives on the roles of trace metals in HABs. With the growing demands of the global population for food security and sustainability, substantial pressure is exerted on the agriculture and aquaculture sector, highlighting the need for effective communication of information regarding the interactions of macro- and micronutrients with HABs to improve existing policies and practices.	[Manic, Dolly C.; Redil, Richard D.; Rodriguez, Irene B.] Univ Philippines, Marine Sci Inst, Coll Sci, Quezon City 1101, Philippines	University of the Philippines System; University of the Philippines Diliman	Rodriguez, IB (通讯作者)，Univ Philippines, Marine Sci Inst, Coll Sci, Quezon City 1101, Philippines.	dmanic@msi.upd.edu.ph; ibrodriguez@msi.upd.edu.ph	Rodríguez, Irene/ISA-8218-2023	Manic, Dolly/0000-0002-9961-5499; Rodriguez, Irene/0000-0001-9848-9526; Redil, Richard/0009-0004-8996-9404	University of the Philippines System; Marine Science Institute, Department of Science and Technology (DOST), Philippine Council for Agriculture Aquatic and Natural Resource Research and Development (DOST-PCAARD); RVA-Marine Microalgal Culture Collection (RVA-MMCC)	University of the Philippines System; Marine Science Institute, Department of Science and Technology (DOST), Philippine Council for Agriculture Aquatic and Natural Resource Research and Development (DOST-PCAARD); RVA-Marine Microalgal Culture Collection (RVA-MMCC)	We express our gratitude to the University of the Philippines System, the Marine Science Institute, Department of Science and Technology (DOST), Philippine Council for Agriculture Aquatic and Natural Resource Research and Development (DOST-PCAARD), and the RVA-Marine Microalgal Culture Collection (RVA-MMCC) for their support to our research group.	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J	Majaneva, M; Jääskeläinen, S; Autio, R; Blomster, J; Rintala, JM				Majaneva, Markus; Jaaskelainen, Sara; Autio, Riitta; Blomster, Jaanika; Rintala, Janne-Markus			Dynamics of cold-water dinoflagellates in the northern Baltic Sea based on 18S rRNA gene metabarcoding	MARINE BIODIVERSITY			English	Article						Succession; Sea ice; Phytoplankton; Niche; Habitat preference	ICE; PATTERNS; BLOOM; PHYLOGENY; CATENATA	Cold-water dinoflagellates contribute significantly to spring blooms in temperate coastal waters. In the northern Baltic Sea, Peridiniella catenata, Apocalathium malmogiense, Gymnodinium corollarium, and Biecheleria baltica predominate the dinoflagellate spring blooms. Spring dynamics of cold-water dinoflagellates have been previously studied using cyst sedimentation data. Here, we utilize time-series data based on amplicons of the V4 region of the 18S rRNA gene spanning from autumn 2012 to spring 2013 and describe dynamics and habitat preferences of the relatively most abundant dinoflagellates in the northern Baltic Sea. Our results indicate that these species preferred either sea ice, under-ice water, or deeper water columns during the ice-covered season and that they shifted in temporal dominance during our sampling period.	[Majaneva, Markus] Norwegian Inst Nat Res NINA, Trondheim, Norway; [Majaneva, Markus; Jaaskelainen, Sara; Rintala, Janne-Markus] Univ Helsinki, Tvarminne Zool Stn, Hango, Finland; [Jaaskelainen, Sara; Blomster, Jaanika] Univ Helsinki, Fac Biol & Environm Sci, Helsinki, Finland; [Autio, Riitta] Finnish Environm Inst, Res Infrastruct Unit, Helsinki, Finland; [Rintala, Janne-Markus] Univ Helsinki, Inst Atmospher & Earth Syst Res INAR, Fac Sci, Helsinki, Finland	Norwegian Institute Nature Research; University of Helsinki; University of Helsinki; Finnish Environment Institute; University of Helsinki	Majaneva, M (通讯作者)，Norwegian Inst Nat Res NINA, Trondheim, Norway.; Majaneva, M (通讯作者)，Univ Helsinki, Tvarminne Zool Stn, Hango, Finland.	markus.majaneva@nina.no		Majaneva, Markus/0000-0003-3884-2548; Blomster, Jaanika/0000-0003-1347-7919; Rintala, Janne-Markus/0000-0002-3514-6582	Norwegian institute for nature research; Walter and Andree de Nottbeck Foundation; University of Helsinki 3 year research	Norwegian institute for nature research(Bioforsk); Walter and Andree de Nottbeck Foundation; University of Helsinki 3 year research	Open access funding provided by Norwegian institute for nature research. Walter and Andree de Nottbeck Foundation and University of Helsinki 3 year research grants provided funding to carry out the field and laboratory analysis within the Winter Ecology Research Project in 2013-2016, led by JMR.	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Biodivers.	JUN	2024	54	3							51	10.1007/s12526-024-01443-7	http://dx.doi.org/10.1007/s12526-024-01443-7			8	Biodiversity Conservation; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation; Marine & Freshwater Biology	SI9L6		hybrid			2025-03-11	WOS:001233942200001
J	Rukminasari, N; Andriyono, S; Hidayani, AA				Rukminasari, Nita; Andriyono, Sapto; Hidayani, Andi Aliyah			Dinoflagellate Cyst Assemblage, Abundance and Distribution in Three Estuaries in Bone Bay, South Sulawesi, Indonesia	OCEAN SCIENCE JOURNAL			English	Article						Dinoflagellate cyst; Distribution and assemblages; Bone Bay; Indonesia	NORTHERN NORTH-ATLANTIC; SURFACE SEDIMENTS; SPATIAL-DISTRIBUTION; RESTING CYSTS; ENVIRONMENTAL-FACTORS; KOLJO FJORD; MARINE; SEA; PRODUCTIVITY; INDICATORS	Dinoflagellates are the main group of primary producers in freshwater and marine ecosystems. Some of these species can produce toxins (only 10% from the total species) and cause the occurrence of harmful-algal-blooms (HABs) worldwide. The purpose of this study was to examine the species assemblages, distribution, diversity, species richness, and abundance of dinoflagellate cysts in three estuaries around Bone Bay, Sulawesi, Indonesia. Thirty-six surface sediment samples were collected from the Teko, Tangka and Panyula estuaries, and dinoflagellates cysts were counted and identified. Multivariate analyses were conducted to examine species assemblages, diversity and richness. Eighteen dinoflagellate taxa from 11 genera and 8 families were identified. The three most abundant dinoflagellate species were Alexandrium minutum, Pentapharsodinium tyrrhenicum, and Scrippsiella lachrymosa. Species assemblages varied between sampling sites, there was no shifting from autotroph to heterotroph dinoflagellate cysts, and based on species richness and diversity, Bone Bay was categorized as oligotrophic. These findings indicate that cyst species could be good indicators for eutrophication and industrial pollution, even though eutrophication was not detected at the sites in Bone Bay during the research period.	[Rukminasari, Nita; Hidayani, Andi Aliyah] Hasanuddin Univ, Fac Marine Sci & Fisheries, Sulawesi Selatan 90245, Indonesia; [Andriyono, Sapto] Airlangga Univ, Fac Fisheries & Marine, Surabaya 60115, Jawa Timur, Indonesia	Universitas Hasanuddin; Airlangga University	Rukminasari, N (通讯作者)，Hasanuddin Univ, Fac Marine Sci & Fisheries, Sulawesi Selatan 90245, Indonesia.	nita.r@unhas.ac.id	Andriyono, Sapto/AAB-7229-2021; Rukminasari, Nita/M-2410-2014; Hidayani, Andi Aliah/H-8117-2017	Rukminasari, Nita/0000-0003-2943-9538; Hidayani, Andi Aliah/0000-0002-4541-5539	Ministry of Eduction, Culture, Research and Higher Degree, Republic of Indonesia [1377/UN4.22/PT.01.03/2022]; Directorate Research and Community Service, Ministry of Education and Culture, Republic of Indonesia	Ministry of Eduction, Culture, Research and Higher Degree, Republic of Indonesia; Directorate Research and Community Service, Ministry of Education and Culture, Republic of Indonesia	We thanks to Director of Center of Excellent and Innovation of Seaweed Development and Utilization who has provided us with room and facilities for analyzing our samples. Also, thanks to Head of Bulukumba, Sinjai and Maros Regency who have given a permission for conducting sampling in their areas. This research was funded by Directorate Research and Community Service, Ministry of Education and Culture, Republic of Indonesia and Universitas Hasanuddin, under research scheme of Indonesian Research Collaboration (A Scheme) with the contract number: 1377/UN4.22/PT.01.03/2022. Author also want to thank to our students (Nur Inda Sari, Andi Widya Anugrah, Delfira, Umi Rintin, Nurul Kiswa and Rizky Amalia Ramadhani) who helping us in sampling and processing our samples.	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J.	JUN	2024	59	2							19	10.1007/s12601-024-00142-5	http://dx.doi.org/10.1007/s12601-024-00142-5			13	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	MX8U1					2025-03-11	WOS:001197034800001
J	Francescangeli, F; Ferraro, L; Frontalini, F; Da Prato, S; Rubino, F				Francescangeli, F.; Ferraro, L.; Frontalini, F.; Da Prato, S.; Rubino, F.			Exploring the underwater life in transitional environments: Benthic foraminifera, ostracods, and dinoflagellate cysts - Biotic trends and EcoQS assessment in the Mar Piccolo of Taranto (Ionian sea, southern Italy)	MARINE ENVIRONMENTAL RESEARCH			English	Article							ECOLOGICAL QUALITY; SEDIMENTARY RECORD; HEAVY-METALS; SW FRANCE; POLLUTION; WATER; ECOSYSTEM; INDEX; BAY; ASSEMBLAGES	Coastal areas have historically thrived as centers of human activities due to their resources, economic opportunities, and natural allure. The rapid growth of coastal populations has however brought forth a multitude of challenges to tackle, with pollution emerging as a significant and far-reaching issue. Our study focuses on the Mar Piccolo of Taranto (Ionian Sea, Southern Italy), a lagoon -like coastal basin (separated in two sub -basins) that, since decades, has been heavily affected by human activities and aquaculture, leading to environmental deterioration. Although past studies have looked at environmental conditions in the Mar Piccolo from a chemical perspective, the biological component (e.g., biological indicators) has been mostly neglected. In this study, we firstly aim to examine the distribution and diversity of foraminifera, ostracods, and dinoflagellate cysts in December 2016 and compare our findings with data collected in December 2011. Foraminiferal and ostracod communities exhibit similar patterns in the two sampling campaigns, while the communities of encysted dinoflagellates show differences concerning both densities and diversity. Then, we evaluate the Ecological Quality Status (EcoQS) using ecological indices. While the indices in the inner basin appear to reflect an actual ecological degradation, they yield conflicting results in the outer basin. In the outer basin, indeed, the indices overestimate the EcoQS. This study highlights the potential of these indices for characterizing the EcoQS but emphasizes the need for improvements in their reliability. This research also contributes to a more holistic understanding of environmental condition in the Mar Piccolo and underscores the importance of integrating biological quality elements into ecosystem management and remediation strategies.	[Francescangeli, F.] Univ Fribourg, Dept Geosci, Chemin Musee 6, CH-1700 Fribourg Freiburg, Switzerland; [Ferraro, L.] CNR Calata Porta Massa, Inst Marine Sci, I-80133 Naples, Italy; [Frontalini, F.] Urbino Univ, Dept Pure & Appl Sci, I-61029 Urbino, Italy; [Da Prato, S.] CNR, Inst Geosci & Earth Resources, Via Moruzzi 1, I-56124 Pisa, Italy; [Rubino, F.] CNR, Inst Water Res, via Roma 3, I-74123 Taranto, Italy	Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Marine (ISMAR-CNR); University of Urbino; Consiglio Nazionale delle Ricerche (CNR); Istituto di Geoscienze e Georisorse (IGG-CNR); Consiglio Nazionale delle Ricerche (CNR)	Ferraro, L (通讯作者)，CNR Calata Porta Massa, Inst Marine Sci, I-80133 Naples, Italy.	fabio.francescangeli@unifr.ch	Francescangeli, Fabio/AAS-1693-2020; Ferraro, Luciana/AAX-6983-2020; Rubino, Fernando/GOP-0332-2022	Francescangeli, Fabio/0000-0002-8309-3315; Ferraro, Luciana/0000-0002-6491-2274	CNR-IRSA of Taranto	CNR-IRSA of Taranto	The field work was financially supported by the CNR-IRSA of Taranto. Special thanks are owed to the crew of the m/b Attilio Cerruti and its Captain Mr. Cosimo Macrip ` o. Giovanni Fanelli (CNR-IRSA Taranto) is acknowledged for his help during the SCUBA dive sampling activities.	Al-Enezi E, 2022, SCI TOTAL ENVIRON, V833, DOI 10.1016/j.scitotenv.2022.155093; Alve E, 2016, MAR MICROPALEONTOL, V122, P1, DOI 10.1016/j.marmicro.2015.11.001; Martins MVA, 2016, ESTUAR COAST SHELF S, V182, P211, DOI 10.1016/j.ecss.2016.10.011; Martins MVA, 2015, PLOS ONE, V10, DOI 10.1371/journal.pone.0118077; Anadon P., 2002, Quat. Res., V131, P227; Annicchiarico C, 2007, ECOTOXICOLOGY, V16, P239, DOI 10.1007/s10646-006-0123-z; [Anonymous], 1998, Serie generale, P291; [Anonymous], 2016, dplyr: A Grammar of Data Manipulation. 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Environ. Res.	JUN	2024	198								106545	10.1016/j.marenvres.2024.106545	http://dx.doi.org/10.1016/j.marenvres.2024.106545		MAY 2024	12	Environmental Sciences; Marine & Freshwater Biology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Toxicology	TP0G4	38749196	hybrid			2025-03-11	WOS:001242340500001
J	Shang, LX; Hu, ZX; Deng, YY; Li, J; Liu, YY; Song, XY; Zhai, XY; Zhan, ZF; Tian, W; Xu, JX; Han, YC; Shen, H; Ding, H; Tang, YZ				Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Li, Jing; Liu, Yuyang; Song, Xiaoying; Zhai, Xinyu; Zhan, Zifeng; Tian, Wen; Xu, Jinxiang; Han, Yangchun; Shen, Hao; Ding, Hua; Tang, Ying Zhong			Transoceanic ships as a source of alien dinoflagellate invasions of inland freshwater ecosystems	HARMFUL ALGAE			English	Article						Harmful algal blooms (HABs); Ballast water; Ballast tank sediments; Dinoflagellate resting cyst; Invasion; Intraspecific variation	BALLAST TANK SEDIMENTS; HARMFUL ALGAL BLOOMS; SP-NOV DINOPHYCEAE; CYST-THECA RELATIONSHIP; ALEXANDRIUM-OSTENFELDII DINOPHYCEAE; MULTIPLE SEQUENCE ALIGNMENT; PERIDINIUM-ACICULIFERUM; BIOLOGICAL INVASIONS; COASTAL WATERS; MOLECULAR CHARACTERIZATION	Ships' ballast water and sediments have long been linked to the global transport and expansion of invasive species and thus have become a hot research topic and administrative challenge in the past decades. The relevant concerns, however, have been mainly about the ocean-to-ocean invasion and sampling practices have been almost exclusively conducted onboard. We examined and compared the dinoflagellate cysts assemblages in 49 sediment samples collected from ballast tanks of international and domestic routes ships, washing basins associated with a ship-repair yard, Jiangyin Port (PS), and the nearby area of Yangtze River (YR) during 2017-2018. A total of 43 dinoflagellates were fully identified to species level by metabarcoding, single-cyst PCR-based sequencing, cyst germination and phylogenetic analyses, including 12 species never reported from waters of China, 14 HABs-causing, 9 toxic, and 10 not strictly marine species. Our metabarcoding and single-cyst sequencing also detected many OTUs and cysts of dinoflagellates that could not be fully identified, indicating ballast tank sediments being a risky repository of currently unrecognizable invasive species. Particularly important, 10 brackish and fresh water species of dinoflagellate cysts (such as Tyrannodinium edax) were detected from the transoceanic ships, indicating these species may function as alien species potentially invading the inland rivers and adjacent lakes if these ships conduct deballast and other practices in fresh waterbodies. Significantly higher numbers of reads and OTUs of dinoflagellates in the ballast tanks and washing basins than that in PS and YR indicate a risk of releasing cysts by ships and the associated ship-repair yards to the surrounding waters. Phylogenetic analyses revealed high intra-species genetic diversity for multiple cyst species from different ballast tanks. Our work provides novel insights into the risk of bio-invasion to fresh waters conveyed in ship's ballast tank sediments and washing basins of shipyards.	[Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Liu, Yuyang; Song, Xiaoying; Zhai, Xinyu; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Liu, Yuyang; Tang, Ying Zhong] Qingdao Marine Sci & Technol Ctr, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Liu, Yuyang; Song, Xiaoying; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Li, Jing; Tian, Wen; Xu, Jinxiang; Han, Yangchun; Shen, Hao; Ding, Hua] Comprehens Tech Serv Ctr Jiangyin Customs, State Key Lab Ballast Water Res, Jiangyin 214431, Peoples R China; [Song, Xiaoying; Zhai, Xinyu] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Zhan, Zifeng] Chinese Acad Sci, Lab Marine Organism Taxon & Phylogeny, Qingdao Key Lab Marine Biodivers & Conservat, Shandong Prov Key Lab Expt Marine Biol,Inst Oceano, Qingdao 266071, Peoples R China; [Li, Jing] Quanzhou Normal Univ, Sch Oceanol & Food Sci, Quanzhou 362000, Peoples R China; [Tian, Wen] Anim Plant & Food Inspect Ctr Nanjing Customs, Nanjing 210000, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Quanzhou Normal University	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Zhang, Xing/ACQ-5035-2022; Li, Yang/KFB-5350-2024	Hu, Zhangxi/0000-0002-4742-4973	National Natural Science Foundation of China [41976134, 42106199]; Science and Technology Innovation Project of Laoshan Laboratory [LSKJ202203700]; Nanjing Custom Research Project [2021KJ42]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Science and Technology Innovation Project of Laoshan Laboratory; Nanjing Custom Research Project	This work was supported by the National Natural Science Foundation of China (Grant No. 41976134), the Science and Technology Innovation Project of Laoshan Laboratory (Grant No. LSKJ202203700), the National Natural Science Foundation of China (Grant No. 42106199), and the Nanjing Custom Research Project (Grant No. 2021KJ42) .	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J	Azanza, RV; Yñiguez, AT; Onda, DF; Benico, GA; Lim, PT; Leaw, CP; Iwataki, M				Azanza, Rhodora V.; Yniguez, Aletta T.; Onda, Deo Florence; Benico, Garry A.; Lim, Po Teen; Leaw, Chui Pin; Iwataki, Mitsunori			Expansion of Toxic Algal Blooms in Coastal and Marine Areas in the Philippines and Malaysia: Is It Climate Change Related?	SUSTAINABILITY			English	Review						Pyrodinium; toxic algal blooms; marine food systems; climate change; paralytic shellfish poisoning (PSP); Ciguatera fish poisoning (CFP)	ALEXANDRIUM-TAMIYAVANICHII; EUTROPHIC CONDITIONS; PYRODINIUM BLOOMS; PLASTIC DEBRIS; FISH KILL; DINOPHYCEAE; BOLINAO; DYNAMICS; COMMUNITIES; MARICULTURE	This paper provides a review of toxic algal blooms in the Philippine and Malaysian coastal and marine systems, considering relevant available knowledge, including climate change dimension/s in the assessment of their recorded recent expansion. The first record of human toxicity in the Philippines associated with HABs/toxic algal blooms specifically was during the bloom of Pyrodinium bahamense in the Sorsogon, Samar, and Leyte waters in 1983. Since then, the species has been identified to occur and cause blooms in about 44 sites/areas in the country. Recent government reports, i.e., 2021, 2022, and 2023, have also identified other paralytic shellfish poisoning (PSP) causative organisms (Gymnodinium catenatum, Alexandrium spp.) in the country. New records indicate that the presence of PSP causative species has been reported almost year-round in the Philippines. In Malaysia, PSP caused by P. bahamense was initially confined in 1981 to the state of Sabah, Malaysia Borneo, but since then, blooms of this species have been reported almost annually at different scales across the coastal waters of Sabah. P. bahamense and other cyst-forming dinoflagellates could be transported naturally or through human activities. Other eco-physiological and environment factors from the field and the laboratory have been used to study the bloom dynamics and transport of PSP causative species in several areas in the Philippines and Malaysia. More recently, plastics and other marine litter have been considered potential vectors of invasion/transport or expansion of dinoflagellates with other microorganisms. ENSO events have been observed to be stronger since 1950 compared with those recorded from 1850 to 1950. The extreme phases of the ENSO phenomenon have a strong modulating effect based on seasonal rainfall in the Philippines, with extreme ENSO warm events (El Nino) often associated with drought and stresses on water resources and agriculture/aquaculture. In contrast, cold events (La Nina) often result in excessive rainfall. The La Nina Advisories from 2021 to 2023 (18 advisories) showed the persistence of this part of ENSO, particularly in regions with recurrent and new records of HABs/toxic algal blooms. More studies and monitoring of another type of toxic algal bloom, Ciguatera Fish Poisoning (CFP), are recommended in tropical countries such as the Philippines and Malaysia, which have extensive reef areas that harvest and culture marine fish for local and export purposes, as accelerating reports of this type of poisoning have apparently increased and causative organisms have been identified in several areas. There is an urgent need to enhance HAB/toxic algal bloom research and monitoring, particularly those related to climate change, which has apparently impacted these blooms/occurrences directly or indirectly. Local researchers and managers should be made aware of the knowledge and tools already available for their utilization and enhancement to meet local conditions and challenges for potential recurrence and expansion of HABs/toxic algal blooms. Regional and international HAB research and collaboration should be further advanced for the protection of public health and marine resources.	[Azanza, Rhodora V.; Yniguez, Aletta T.; Onda, Deo Florence] Univ Philippines, Marine Sci Inst, Quezon City 1101, Philippines; [Benico, Garry A.] Cent Luzon State Univ, Coll Sci, Dept Biol Sci, Sci City Munoz 3120, Philippines; [Lim, Po Teen; Leaw, Chui Pin] Univ Malaya, Inst Ocean & Earth Sci, Bachok Marine Res Stn, Bachok 16310, Kelantan, Malaysia; [Iwataki, Mitsunori] Univ Tokyo, Grad Sch Agr & Life Sci, 1-1-1 Yayoi, Tokyo 1138657, Japan	University of the Philippines System; University of the Philippines Diliman; Central Luzon State University; Universiti Malaya; University of Tokyo	Azanza, RV (通讯作者)，Univ Philippines, Marine Sci Inst, Quezon City 1101, Philippines.	rvazanza@up.edu.ph; atyniguez@msi.upd.edu.ph	Benico, Garry/S-6313-2019; Lim, Po Teen/C-9758-2013; Iwataki, Mitsunori/H-9640-2019; Leaw, Chui Pin/F-5220-2012	Lim, Po Teen/0000-0003-2823-0564; Iwataki, Mitsunori/0000-0002-5844-2800; Benico, Garry/0000-0002-2617-0222; Leaw, Chui Pin/0000-0003-3336-1438; Onda, Deo Florence/0000-0003-4670-2051	Philippines was funded by the Department of Science and Technology-Philippine Council for Agriculture and Aquatic Resources Research and Development (DOST-PCAARRD); Marine Science Institute, University of the Philippines	Philippines was funded by the Department of Science and Technology-Philippine Council for Agriculture and Aquatic Resources Research and Development (DOST-PCAARRD); Marine Science Institute, University of the Philippines	We gratefully acknowledge the varied kinds of assistance provided by the Marine Science Institute, University of the Philippines, Diliman. We also wish to acknowledge our Philippine, Malaysian, ASEAN, and other international collaborators and co-workers in the laboratory and the field who have helped or influenced our research. Positive recommendations from the editor/s and reviewers enhanced this paper.	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J	Anschütz, AA; Maselli, M; Traboni, C; Boon, AR; Stolte, W				Anschuetz, Anna-Adriana; Maselli, Maira; Traboni, Claudia; Boon, Arjen R.; Stolte, Willem			Importance of integrating mixoplankton into marine ecosystem policy and management-Examples from the Marine Strategy Framework Directive	INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT			English	Review						Coastal and marine management; HAB risk assessment; Marine Strategy Framework Directive; Mixoplankton; Plankton monitoring guidelines	HARMFUL ALGAL BLOOMS; MIXOTROPHIC DINOFLAGELLATE; ENVIRONMENTAL STATUS; RESTING CYSTS; PHYTOPLANKTON; PLANKTON; INDICATORS; DINOPHYSIS; GROWTH; FOOD	Marine plankton capable of photosynthesis and predation ("mixoplankton") comprise up to 50% of protist plankton and include many harmful species. However, marine environmental management policies, including the European Union Marine Strategy Framework Directive (MSFD) and the USEPA, assume a strict dichotomy between autotrophic phytoplankton and heterotrophic zooplankton. Mixoplankton often differ significantly from these two categories in their response to environmental pressures and affect the marine environment in ways we are only beginning to understand. While the management policies may conceptually provide scope for incorporating mixoplankton, such action is rarely implemented. We suggest that the effectiveness of monitoring and management programs could benefit from explicit implementations regarding the ecological roles and impact of mixoplankton. Taking the MSFD as an example of marine management guidelines, we propose appropriate methods to explicitly include mixoplankton in monitoring and marine management. Integr Environ Assess Manag 2024;00:1-18. (c) 2024 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC). Mixoplankton (capable of photo- and heterotrophy) are a broad trophic group that is currently not considered by marine environmental management, while they often display different responses to environmental changes than strict phytoplankton or zooplankton due to their unique physiology. Many harmful algal species that are currently being monitored due to their impact on public health and the economy are mixoplankton, and effective forecasting systems may be challenging to establish by not considering their unique trophic mode. We showcase where the current omission of mixoplankton from marine management can misinform on the environmental status of marine ecosystems and how existing management and monitoring programs can benefit from including mixoplankton. Using the European Marine Strategy Framework Directive as an example, we show how mixoplankton can be integrated into existing management programs and where research gaps still exist.	[Anschuetz, Anna-Adriana] Leibniz Inst Balt Sea Res Warnemunde, Rostock, Germany; [Anschuetz, Anna-Adriana] Cardiff Univ, Sch Earth & Environm Sci, Cardiff, Wales; [Anschuetz, Anna-Adriana; Traboni, Claudia] Univ Libre Bruxelles, Lab Ecol Syst Aquat, Brussels, Belgium; [Maselli, Maira] Univ Copenhagen, Marine Biol Sect, Helsingor, Denmark; [Maselli, Maira] Stn Zool Anton Dohrn, Naples, Italy; [Traboni, Claudia] CSIC, Inst Ciencies Mar, Barcelona, Spain; [Boon, Arjen R.] Avans Univ Appl Sci, Breda, Netherlands; [Stolte, Willem] Deltares, Delft, Netherlands	Leibniz Institut fur Ostseeforschung Warnemunde; Cardiff University; Universite Libre de Bruxelles; University of Copenhagen; Stazione Zoologica Anton Dohrn; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Centro Mediterraneo de Investigaciones Marinas y Ambientales (CMIMA); CSIC - Instituto de Ciencias del Mar (ICM); Deltares	Anschütz, AA (通讯作者)，Leibniz Inst Balt Sea Res Warnemunde, Rostock, Germany.; Anschütz, AA (通讯作者)，Cardiff Univ, Sch Earth & Environm Sci, Cardiff, Wales.; Anschütz, AA (通讯作者)，Univ Libre Bruxelles, Lab Ecol Syst Aquat, Brussels, Belgium.	anna.a.anschuetz@gmail.com	Boon, Arjen/A-7257-2010; Maselli, Maira/IXN-4018-2023; Boon, Arjen/MAH-1959-2025; Traboni, Claudia/O-6684-2018	Anschutz, Anna-Adriana/0000-0002-1583-9613; Boon, Arjen/0000-0003-2614-5024; Traboni, Claudia/0000-0003-0380-2888	European Union [766327]; European Union's Horizon 2020 Research and Innovation Program Project "MixITiN" under Marie Sklstrok;odowska-Curie; Leibniz Institute for Baltic Sea Research Warnemunde (IOW); Projekt DEAL	European Union(European Union (EU)); European Union's Horizon 2020 Research and Innovation Program Project "MixITiN" under Marie Sklstrok;odowska-Curie; Leibniz Institute for Baltic Sea Research Warnemunde (IOW); Projekt DEAL	The authors thank colleagues in the MixITiN project () for discussions that have improved this work. This project received funding from the European Union's Horizon 2020 Research and Innovation Program Project "MixITiN" under Marie Sklodowska-Curie grant agreement No. 766327 and the Leibniz Institute for Baltic Sea Research Warnemunde (IOW). Open Access funding enabled and organized by Projekt DEAL.	Abad D, 2016, MAR BIOL, V163, DOI 10.1007/s00227-016-2920-0; Adolf JE, 2009, J PHYCOL, V45, P176, DOI 10.1111/j.1529-8817.2008.00641.x; Anderson D. 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Environ. Assess. Manag.	SEP	2024	20	5					1366	1383		10.1002/ieam.4914	http://dx.doi.org/10.1002/ieam.4914		MAR 2024	18	Environmental Sciences; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Toxicology	D6F2G	38546146	hybrid			2025-03-11	WOS:001192233600001
J	Bijl, PK				Bijl, Peter K.			DINOSTRAT version 2.1-GTS2020	EARTH SYSTEM SCIENCE DATA			English	Article							DATABASE	DINOSTRAT version 2.1-GTS2020 is now available (10.5281/zenodo.10506652, Bijl et al., 2024b). This version updates DINOSTRAT to the Geologic Time Scale 2020, and new publications are added into the database. The resulting database now contains over 9450 entries from 209 sites. This update has not led to major and profound changes in the conclusions made previously. DINOSTRAT allows full presentation of the first and last stratigraphic occurrences of dinoflagellate cyst subfamilies and families, as well as the evolutionary turnover throughout geologic history, as a reliable representation of dinoflagellate evolution. Although the picture of dinoflagellate evolution from DINOSTRAT is broadly consistent with that in previous publications, with DINOSTRAT the underlying data are openly available, reproducible and up to date. This release of DINOSTRAT allows calibration of stratigraphic records to the Geologic Time Scale 2020 using dinoflagellate cysts as a biostratigraphic tool.	[Bijl, Peter K.] Univ Utrecht, Fac Geosci, Dept Earth Sci, Princetonlaan 8A, NL-3584 CB Utrecht, Netherlands	Utrecht University	Bijl, PK (通讯作者)，Univ Utrecht, Fac Geosci, Dept Earth Sci, Princetonlaan 8A, NL-3584 CB Utrecht, Netherlands.	p.k.bijl@uu.nl		Bijl, Peter/0000-0002-1710-4012	LPP Foundation; Department of Earth Sciences of Utrecht University	LPP Foundation; Department of Earth Sciences of Utrecht University	The author thanks the LPP Foundation and the department of Earth Sciences of Utrecht University for supporting this work. Thanks go to Appy Sluijs, Henk Brinkhuis, Francesca Sangiorgi, Denise Kulhanek, Jeremy Young and Paul Bown for fruitful discussions. I thank the editor Giuseppe Manzella for helpful comments on this paper. Jan Hennissen, Rob Fensome and the anonymous reviewer are thanked for their constructive review of the paper.	Bijl P. K., DINOSTRAT Version2.1-GTS2020(2.1), Zenodo, DOI [10.5281/zenodo.10506652,2024b, DOI 10.5281/ZENODO.10506652,2024B]; Bijl PK, 2022, EARTH SYST SCI DATA, V14, P579, DOI 10.5194/essd-14-579-2022; Bijl PK, 2024, Zenodo, DOI 10.5281/ZENODO.10501273; Bravo Isabel, 2014, Microorganisms, V2, P11; Bujak J, 2022, ATL GEOL, V58, P55, DOI 10.4138/atlgeo.2022.003; Copestake P., 2023, Geological Society, London, Memoirs, V59, P387, DOI [10.1144/M59-2022-61, DOI 10.1144/M59-2022-61]; Crouch EM, 2024, NEW ZEAL J GEOL GEOP, V67, P20, DOI 10.1080/00288306.2022.2090386; Fensome R. A., 1993, Special Paper; Fensome RA, 1996, PALEOBIOLOGY, V22, P329, DOI 10.1017/S0094837300016316; Estebenet MSG, 2021, REV PALAEOBOT PALYNO, V285, DOI 10.1016/j.revpalbo.2020.104342; Gradstein FM, 2012, GEOLOGIC TIME SCALE 2012, VOLS 1 & 2, P1, DOI 10.1016/B978-0-444-59425-9.00001-9; Gradstein F.M., 2020, GEOLOGIC TIME SCALE, DOI [10.1016/B978-0-12-824360-2.00032-2, DOI 10.1016/B978-0-12-824360-2.00032-2]; Guerrero-Murcia LA, 2022, J S AM EARTH SCI, V115, DOI 10.1016/j.jsames.2022.103730; Jarvis I, 2021, CRETACEOUS RES, V123, DOI 10.1016/j.cretres.2021.104782; Pearce MA, 2022, CR GEOSCI, V354, P45, DOI 10.5802/crgeos.118; Pearce MA, 2020, REV PALAEOBOT PALYNO, V278, DOI 10.1016/j.revpalbo.2020.104188; Rochon A, 2009, REV PALAEOBOT PALYNO, V155, P52, DOI 10.1016/j.revpalbo.2008.12.017; Thöle LM, 2023, J MICROPALAEONTOL, V42, P35, DOI 10.5194/jm-42-35-2023; Torricelli S, 2022, J AFR EARTH SCI, V192, DOI 10.1016/j.jafrearsci.2022.104536; Vaes B, 2023, EARTH-SCI REV, V245, DOI 10.1016/j.earscirev.2023.104547; Vasilyeva ON, 2023, PALAEOWORLD, V32, P523, DOI 10.1016/j.palwor.2022.11.006; Vieira M, 2022, PALYNOLOGY, V46, DOI 10.1080/01916122.2021.2006817; Vieira M, 2020, MAR PETROL GEOL, V117, DOI 10.1016/j.marpetgeo.2020.104400; Wickham H., 2016, GGPLOT2 ELEGANT GRAP, V1	24	0	0	1	1	COPERNICUS GESELLSCHAFT MBH	GOTTINGEN	BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY	1866-3508	1866-3516		EARTH SYST SCI DATA	Earth Syst. Sci. Data	MAR 15	2024	16	3					1447	1452		10.5194/essd-16-1447-2024	http://dx.doi.org/10.5194/essd-16-1447-2024			6	Geosciences, Multidisciplinary; Meteorology & Atmospheric Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Geology; Meteorology & Atmospheric Sciences	ME2F4		gold, Green Submitted			2025-03-11	WOS:001191877500001
J	Shinzato, C; Yoshioka, Y				Shinzato, Chuya; Yoshioka, Yuki			Genomic Data Reveal Diverse Biological Characteristics of Scleractinian Corals and Promote Effective Coral Reef Conservation	GENOME BIOLOGY AND EVOLUTION			English	Review						scleractinian corals; genome sequencing; evolution; conservation; diversity	GREAT-BARRIER-REEF; GENETIC DIVERSITY; WILD POPULATIONS; ACROPORA-TENUIS; BIOSYNTHESIS; RESPONSES; SYMBIOSIS	Reef-building corals (Scleractinia, Anthozoa, Cnidaria) are the keystone organisms of coral reefs, which constitute the most diverse marine ecosystems. Since the first decoded coral genome reported in 2011, about 40 reference genomes are registered as of 2023. Comparative genomic analyses of coral genomes have revealed genomic characters that may underlie unique biological characteristics and coral diversification. These include existence of genes for biosynthesis of mycosporine-like amino acids, loss of an enzyme necessary for cysteine biosynthesis in family Acroporidae, and lineage-specific gene expansions of DMSP lyase-like genes in the genus Acropora. While symbiosis with endosymbiotic photosynthetic dinoflagellates is a common biological feature among reef-building corals, genes associated with the intricate symbiotic relationship encompass not only those shared by many coral species, but also genes that were uniquely duplicated in each coral lineage, suggesting diversified molecular mechanisms of coral-algal symbiosis. Coral genomic data have also enabled detection of hidden, complex population structures of corals, indicating the need for species-specific, local-scale, carefully considered conservation policies for effective maintenance of corals. Consequently, accumulating coral genomic data from a wide range of taxa and from individuals of a species not only promotes deeper understanding of coral reef biodiversity, but also promotes appropriate and effective coral reef conservation. Considering the diverse biological traits of different coral species and accurately understanding population structure and genetic diversity revealed by coral genomic analyses during coral reef restoration planning could enable us to "archive" coral reef environments that are nearly identical to natural coral reefs.	[Shinzato, Chuya] Univ Tokyo, Atmosphere & Ocean Res Inst, Kashiwa, Chiba 2778564, Japan; [Yoshioka, Yuki] Okinawa Inst Sci & Technol Grad Univ, Marine Genom Unit, Okinawa 9040412, Japan	University of Tokyo; Okinawa Institute of Science & Technology Graduate University	Shinzato, C (通讯作者)，Univ Tokyo, Atmosphere & Ocean Res Inst, Kashiwa, Chiba 2778564, Japan.	c.shinzato@aori.u-tokyo.ac.jp	Yoshioka, Yuki/AAO-5382-2020; Shinzato, Chuya/G-2958-2015	Shinzato, Chuya/0000-0001-7843-3381; Yoshioka, Yuki/0000-0001-6348-4629	Japan Society for the Promotion of Science (JSPS) KAKENHI [20H03235, 20K21860]; JSPS [20J21301, 23KJ2129]; Grants-in-Aid for Scientific Research [23KJ2129, 20H03235, 20K21860] Funding Source: KAKEN	Japan Society for the Promotion of Science (JSPS) KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); JSPS(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	Preparation of the manuscript was partially supported by Japan Society for the Promotion of Science (JSPS) KAKENHI grants (20H03235 and 20K21860 for C.S.) and Grant-in-Aid for JSPS Fellows to Y.Y. 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Evol.	FEB 1	2024	16	2							evae014	10.1093/gbe/evae014	http://dx.doi.org/10.1093/gbe/evae014		FEB 2024	8	Evolutionary Biology; Genetics & Heredity	Science Citation Index Expanded (SCI-EXPANDED)	Evolutionary Biology; Genetics & Heredity	KB9N0	38271267	Green Published, gold			2025-03-11	WOS:001177618400004
J	Hedberg, P; Olsson, M; Höglander, H; Brüchert, V; Winder, M				Hedberg, Per; Olsson, Markus; Hoglander, Helena; Bruchert, Volker; Winder, Monika			Climate change effects on plankton recruitment from coastal sediments	JOURNAL OF PLANKTON RESEARCH			English	Article						resting stage; recruitment; emergence; phytoplankton; zooplankton; dinoflagellate; cyanobacteria; diatoms; copepods	FILAMENTOUS CYANOBACTERIA; SEASONAL OCCURRENCE; COMMUNITY ECOLOGY; CALANOID COPEPODS; RESTING STAGES; LIFE-HISTORY; BALTIC SEA; PHYTOPLANKTON; BLOOMS; EGGS	In highly seasonal systems, the emergence of planktonic resting stages from the sediment is a key driver for bloom timing and plankton community composition. The termination of the resting phase is often linked to environmental cues, but the extent to which recruitment of resting stages is affected by climate change remains largely unknown for coastal environments. Here we investigate phyto- and zooplankton recruitment from oxic sediments in the Baltic Sea in a controlled experiment under proposed temperature and light increase during the spring and summer. We find that emergence of resting stage differs between seasons and the abiotic environment. Phytoplankton recruitment from resting stages were high in spring with significantly higher emergence rates at increased temperature and light levels for dinoflagellate and cyanobacteria than for diatoms, which had highest emergence under cold and dark conditions. In comparison, hatching of copepod nauplii was not affected by increased temperature and light levels. These results show that activation of plankton resting stages are affected to different degrees by increasing temperature and light levels, indicating that climate change affects plankton dynamics through processes related to resting stage termination with potential consequences for bloom timing, community composition and trophic mismatch.	[Hedberg, Per; Olsson, Markus; Hoglander, Helena; Winder, Monika] Stockholm Univ, Dept Ecol Environm & Plant Sci, Stockholm, Sweden; [Bruchert, Volker] Stockholm Univ, Dept Geol Sci, Stockholm, Sweden; [Bruchert, Volker; Winder, Monika] Stockholm Univ, Bolin Ctr Climate Res, Stockholm, Sweden; [Hedberg, Per] Univ Helsinki, Tvarminne Zool Stn, Hango 10900, Finland	Stockholm University; Stockholm University; University of Helsinki	Winder, M (通讯作者)，Stockholm Univ, Dept Ecol Environm & Plant Sci, Stockholm, Sweden.; Winder, M (通讯作者)，Stockholm Univ, Bolin Ctr Climate Res, Stockholm, Sweden.	per.hedberg@helsinki.fi; markus.olsson@su.se; helena.hoglander@su.se; volker.bruchert@geo.su.se; monika.winder@su.se	Winder, Monika/F-5318-2016	Olsson, Markus/0009-0004-5622-1723; Winder, Monika/0000-0001-9467-3035; Bruchert, Volker/0000-0002-8956-3840; Hedberg, Per/0000-0001-9809-5439	Swedish Research Council Formas [2015-1320]	Swedish Research Council Formas(Swedish Research Council Formas)	We are grateful for the support by the staff at the Asko field station, Nellie Stjarnkvist and Sebastian Strandgaard in sample collection. We also acknowledge constructive feedback from reviewers. This project was funded by the Swedish Research Council Formas (Grant 2015-1320).	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Plankton Res.	FEB 15	2024	46	2					117	125		10.1093/plankt/fbad060	http://dx.doi.org/10.1093/plankt/fbad060		FEB 2024	9	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	YP2D5	38572122	Green Published, hybrid			2025-03-11	WOS:001166202500001
J	Chai, ZY; Liu, YY; Jia, SY; Li, FT; Hu, ZX; Deng, YY; Yue, CX; Tang, YZ				Chai, Zhaoyang; Liu, Yuyang; Jia, Siyang; Li, Fengting; Hu, Zhangxi; Deng, Yunyan; Yue, Caixia; Tang, Ying-Zhong			DNA and RNA Stability of Marine Microalgae in Cold-Stored Sediments and Its Implications in Metabarcoding Analyses	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES			English	Article						microalgae; DNA/RNA stability; resting cysts; sediments; metabarcoding; quantitative real-time PCR	POLYMERASE-CHAIN-REACTION; HARMFUL ALGAL BLOOMS; 16S RIBOSOMAL-RNA; REAL-TIME PCR; PROPIDIUM MONOAZIDE; BACTERIAL COMMUNITIES; EXTRACELLULAR DNA; GONYAULAX-TAMARENSIS; SP-NOV; CELLS	The ever-increasing applications of metabarcoding analyses for environmental samples demand a well-designed assessment of the stability of DNA and RNA contained in cells that are deposited or buried in marine sediments. We thus conducted a qPCR quantification of the DNA and RNA in the vegetative cells of three microalgae entrapped in facsimile marine sediments and found that >90% of DNA and up to 99% of RNA for all microalgal species were degraded within 60 days at 4 degrees C. A further examination of the potential interference of the relic DNA of the vegetative cells with resting cyst detection in sediments was performed via a metabarcoding analysis in artificial marine sediments spiked with the vegetative cells of two Kareniaceae dinoflagellates and the resting cysts of another three dinoflagellates. The results demonstrated a dramatic decrease in the relative abundances of the two Kareniaceae dinoflagellates in 120 days, while those of the three resting cysts increased dramatically. Together, our results suggest that a positive detection of microalgae via metabarcoding analysis in DNA or RNA extracted from marine sediments strongly indicates the presence of intact or viable cysts or spores due to the rapid decay of relic DNA/RNA. This study provides a solid basis for the data interpretation of metabarcoding surveys, particularly in resting cyst detection.	[Chai, Zhaoyang; Liu, Yuyang; Li, Fengting; Hu, Zhangxi; Deng, Yunyan; Yue, Caixia; Tang, Ying-Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Chai, Zhaoyang; Liu, Yuyang; Li, Fengting; Hu, Zhangxi; Deng, Yunyan; Tang, Ying-Zhong] Laoshan Lab, Qingdao 266237, Peoples R China; [Chai, Zhaoyang; Liu, Yuyang; Li, Fengting; Hu, Zhangxi; Deng, Yunyan; Tang, Ying-Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Jia, Siyang] Chinese Acad Sci, Inst Oceanol, Yellow Sea & East Sea Buoy Observat Stn, Qingdao 266071, Peoples R China; [Yue, Caixia] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Laoshan Lab, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	zhaoyangchai@qdio.ac.cn; lyy9303130@163.com; jiasy@qdio.ac.cn; lifengting111@126.com; huzx@gdou.edu.cn; yunyandeng@qdio.ac.cn; yuecaixia@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	Chai, Zhaoyang/F-7485-2017; ZHANG, hui jie/HTN-1690-2023; Li, Yang/KFB-5350-2024	Liu, Yuyang/0000-0003-0418-4989; Deng, Yunyan/0000-0001-5967-3611; Hu, Zhangxi/0000-0002-4742-4973; Chai, Zhaoyang/0000-0003-0526-8930; Tang, Ying-Zhong/0000-0003-0446-3128	Key Research Infrastructures in the CAS Field Stations of the Chinese Academy of Science	Key Research Infrastructures in the CAS Field Stations of the Chinese Academy of Science	We would like to express our sincere gratitude to the four anonymous reviewers for their critical review and constructive comments.	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FEB	2024	25	3							1724	10.3390/ijms25031724	http://dx.doi.org/10.3390/ijms25031724			17	Biochemistry & Molecular Biology; Chemistry, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Biochemistry & Molecular Biology; Chemistry	HQ8I3	38339002	gold, Green Published			2025-03-11	WOS:001161059700001
J	Fanberg, LM; Nagel, MA; Polkinghorne, CN; Teneyck, MC				Fanberg, Lana M.; Nagel, Michael A.; Polkinghorne, Christine N.; Teneyck, Matthew C.			Presence of zooplankton, eggs, and resting stages in ballast water samples from the Laurentian Great Lakes	JOURNAL OF GREAT LAKES RESEARCH			English	Article						Ballast water management; Dormancy; Invasion risk	INVERTEBRATE DIAPAUSING EGGS; RESIDUAL BALLAST; DINOFLAGELLATE CYSTS; BIOLOGICAL INVASIONS; EAST-COAST; SHIPS; SEDIMENTS; DORMANCY; RISK; INTRODUCTIONS	To minimize the introduction and spread of aquatic nuisance species, the United States Coast Guard (USCG) and the International Maritime Organization (IMO) regulate the allowed microbe, protist, and zooplankton densities present in ballast water discharged from commercial ships. However, the density of eggs and resting stages in ballast discharge are not routinely assessed when determining the effectiveness of ballast water treatment systems. While the density of eggs and resting stages found in residual sediment has been examined by various researchers, the density in ballast water uptake and discharge samples was previously unexamined. Untreated uptake and discharge ballast water samples from 2017, 2022, and 2023, collected on ships within the Laurentian Great Lakes from August through January, were analyzed for eggs and resting stages. The samples contained a total density of 325-140,859 eggs and resting stages per cubic meter. These results demonstrate that uncounted eggs and resting stages are present in ballast water, contributing to the risk of spreading aquatic nuisance species within the Great Lakes.	[Fanberg, Lana M.; Nagel, Michael A.; Polkinghorne, Christine N.; Teneyck, Matthew C.] Univ Wisconsin, Lake Superior Res Inst, POB 2000, Superior, WI 54880 USA	University of Wisconsin System	Fanberg, LM (通讯作者)，Univ Wisconsin, Lake Superior Res Inst, POB 2000, Superior, WI 54880 USA.	lfanberg@uwsuper.edu		Fanberg, Lana/0009-0007-1874-2490	U.S. Department of Transportation Maritime Administration [693JF72250002]	U.S. Department of Transportation Maritime Administration	<BOLD>Acknowledgements</BOLD> This material is based on work supported by the U.S. Department of Transportation Maritime Administration under Agreement No. 693JF72250002. The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the opinions, policies, or endorsements of the U.S. Government. Mention of trade names or commercial products does not constitute their endorsement by the U.S. Government. We would like to thank Dr. Mary Balcer and Dr. Euan Reavie for their assistance with eggs and resting stages identification and Dr. Anne Kruchten, Dr. Jennifer Maki, Kelsey Prihoda, Heidi Schaefer, and Dr. Kurt Schmude for their help with this manuscript and discussions on this topic.	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Gt. Lakes Res.	FEB	2024	50	1							102275	10.1016/j.jglr.2023.102275	http://dx.doi.org/10.1016/j.jglr.2023.102275		JAN 2024	7	Environmental Sciences; Limnology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	IT8P0					2025-03-11	WOS:001168681400001
J	Mertens, KN; Meyvisch, P; Gurdebeke, P; Pospelova, V; Matsuoka, K; Bilien, G; Gu, HF; Yamaguchi, A				Mertens, Kenneth Neil; Meyvisch, Pjotr; Gurdebeke, Pieter; Pospelova, Vera; Matsuoka, Kazumi; Bilien, Gwenael; Gu, Haifeng; Yamaguchi, Aika			New investigation of the cyst-motile relationship for <i>Votadinium spinosum</i> reveals a <i>Protoperidinium claudicans</i> species complex (Dinophyceae, Peridiniales)	PALYNOLOGY			English	Article						cysts; cordate; dinoflagellate; spinose; heterotrophic; Protoperidinium carriae; LSU rDNA; molecular phylogenetics; species complex	DINOFLAGELLATE CYSTS; SP-NOV; MOLECULAR PHYLOGENY; BRITISH-COLUMBIA; PRODUCTIVITY; SEDIMENTS; WATERS; GENUS	Protoperidinium claudicans is a planktonic, heterotrophic, bioluminescent dinoflagellate species commonly found in neritic waters. It has long been considered to display phenotypic variation in its second anterior intercalary plate, which could vary between quadra, penta and hexa. The equivalent spinose, cordate cyst goes under the name of Votadinium spinosum. Here we perform incubation experiments with cysts from France, Canada, China and Japan, which demonstrate that P. claudicans forms a species complex, with at least two ribotypes with a penta configuration (P. claudicans) and one with a quadra configuration (P. carriae sp. nov.). A fossil-based cyst, V. multispinosum sp. nov., is described as the equivalent of P. carriae. Molecular phylogenetics using large subunit ribosomal DNA supports these observations. The cyst-theca relationships for Votadinium psilodora and another, undescribed, cordate, spineless Votadinium species are also reported from China. Macromolecular analyses of the cyst wall of V. multispinosum reveal it is comprised of a protein-rich carbohydrate compound. We show that this compound is not uncommon in dinoflagellate and ciliate cysts and that it is unlikely to preserve very well upon sedimentation and burial.	[Mertens, Kenneth Neil; Bilien, Gwenael] Ifremer, LITTORAL, Concarneau, France; [Meyvisch, Pjotr; Gurdebeke, Pieter] Univ Ghent, Dept Geol, Ghent, Belgium; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, Minneapolis, MN USA; [Matsuoka, Kazumi] Inst East China Sea Res, Nagasaki, Japan; [Gu, Haifeng] Minist Nat Resources, Dept Marine Biol & Ecol, Inst Oceanog 3, Xiamen, Peoples R China; [Yamaguchi, Aika] Hokkaido Univ, Fac Sci, Sapporo, Japan	Ifremer; Ghent University; University of Minnesota System; University of Minnesota Twin Cities; Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; Hokkaido University	Mertens, KN (通讯作者)，Ifremer, LITTORAL, Concarneau, France.	kenneth.mertens@ifremer.fr	Mertens, Kenneth/AAO-9566-2020; Meyvisch, Pjotr/ABB-1527-2021; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Gu, Haifeng/0000-0002-2350-9171; Pospelova, Vera/0000-0003-4049-8133; Mertens, Kenneth/0000-0003-2005-9483	French National Research Agency (ANR) PhenoMap project [ANR-20-CE02-0025]; Grants-in-Aid for Scientific Research [20KK0141, 20K04089, 22KJ0037] Funding Source: KAKEN; Agence Nationale de la Recherche (ANR) [ANR-20-CE02-0025] Funding Source: Agence Nationale de la Recherche (ANR)	French National Research Agency (ANR) PhenoMap project(Agence Nationale de la Recherche (ANR)Agence nationale pour le developpement de la recherche en sante (ANDRS)Agence Nationale Des Plantes Medicinales Et Aromatiques, ANPMA, Morocco); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Agence Nationale de la Recherche (ANR)(Agence Nationale de la Recherche (ANR))	KNM and GB were financially supported by the French National Research Agency (ANR) PhenoMap project, ANR-20-CE02-0025.	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J	Lipsewers, T				Lipsewers, Tobias			Consistent separation of resting stages and vegetative cells of spring bloom dinoflagellates in the Baltic Sea benefits coherent data acquisition	BOREAL ENVIRONMENT RESEARCH			English	Editorial Material									[Lipsewers, Tobias] Gartenstr 73, D-33397 Rietberg, Germany		Lipsewers, T (通讯作者)，Gartenstr 73, D-33397 Rietberg, Germany.	tobias.lipsewers@gmail.com			Academy of Finland [259164, 263862]; Onni Talas Foundation; University of Helsinki; Academy of Finland (AKA) [263862] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Onni Talas Foundation; University of Helsinki; Academy of Finland (AKA)(Research Council of Finland)	The following people and institutions are acknowledged: Dr. Harri Kuosa (Marine and freshwater solutions, Finnish Environment Institute, Helsinki (SYKE) ) for his helpful feedback on the manuscript; Dr. Anke Kremp (Leibniz-Institute for Baltic Sea Research, Warnemunde, Germany) for making me aware of the resting stages of Gymnodinium corollarium ; Johanna Oja (SYKE) for carrying out part of the "Lugol-microscopy", which was essential for the planning of the subsequent epifluorescence microscopy and different analyses; SYKE for the opportunity to work in the C-FluxII-project and to participate in the cruises; and the crew of R/V Aranda for great technical support and fabulous catering. During a large part of the practical work, funding was available from the Academy of Finland (decision numbers 259164 and 263862) for the C-fluxII-project and personal grants were awarded to Tobias Lipsewers by the Onni Talas Foundation and the University of Helsinki. This study utilised SYKE's marine research infrastructure as a part of the national FINMARI consortium.r different analyses; SYKE for the opportunity to work in the C-FluxII-project and to participate in the cruises; and the crew of R/V Aranda for great technical support and fabulous catering. During a large part of the practical work, funding was available from the Academy of Finland (decision num-bers 259164 and 263862) for the C-fluxII-project and per-sonal grants were awarded to Tobias Lipsewers by the Onni Talas Foundation and the University of Helsinki. This study utilised SYKE's marine research infrastructure as a part of the national FINMARI consortium.	Lipsewers T, 2023, BOREAL ENVIRON RES, V28, P195; Lipsewers T, 2018, BOREAL ENVIRON RES, V23, P127; Spilling K, 2019, LIMNOL OCEANOGR, V64, P1779, DOI 10.1002/lno.11150; Sundström AM, 2009, J PHYCOL, V45, P938, DOI 10.1111/j.1529-8817.2009.00712.x; Tamminen T, 2007, MAR ECOL PROG SER, V340, P121, DOI 10.3354/meps340121; Wasmund N, 2017, FRONT MAR SCI, V4, DOI 10.3389/fmars.2017.00022	6	0	0	1	1	FINNISH ENVIRONMENT INST	HELSINKI	P O BOX 140, FIN-00251 HELSINKI, FINLAND	1239-6095	1797-2469		BOREAL ENVIRON RES	Boreal Environ. Res.		2024	29						127	129						3	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	YX4K1					2025-03-11	WOS:001271769300001
J	Dvoretsky, AG; Dvoretsky, VG				Dvoretsky, Alexander G.; Dvoretsky, Vladimir G.			Filling knowledge gaps in Arctic marine biodiversity: Environment, plankton, and benthos of Franz Josef Land, Barents Sea	OCEAN & COASTAL MANAGEMENT			English	Review						Barents sea; Oceanography; Climate; Pelagic organisms; Zoobenthos; Diversity	CLIMATE-CHANGE; INTERANNUAL DYNAMICS; COMMUNITY STRUCTURE; ISLAND; OCEAN; BIOMASS; FAUNA; MESOZOOPLANKTON; ZOOPLANKTON; DIVERSITY	Franz Josef Land (FJL) is a remote archipelago that has become more accessible for large-scale studies due to recent warming. This paper summarizes recent survey findings on oceanography, climate, plankton, and benthic communities conducted in FJL. Cold Arctic waters predominantly affect FJL, but an increased inflow of warmer Atlantic water has been observed in recent decades. The bacterioplankton in FJL is mainly comprised of ultra-small bacterial cells, which make up to 60% of the biomass. Phytoplankton are predominantly composed of cells smaller than 20 mu m, with the greatest concentrations found above the pycnocline. The population of larger microalgae ranges from 4.5 to 1250 thousand cells L-1, with dinoflagellates occupying the euphotic zone, Dinobryon being the most abundant species in the thermocline, and spore-bearing cells of Chaetoceros diatoms dominating in the deepest region. Summer zooplankton comprise large Calanus copepods, smaller copepods, and meroplankton, with an average dry biomass of 114-391 mg m(-3). The community structure varies mainly based on water temperature and phytoplankton density, with greater biomasses found in colder offshore waters. August represents the breeding season for plankton populations. The local benthic fauna is diverse and displays high species abundance (3370 ind. m(-2)) and wet biomass (428 g m(-2)). There is a distinct vertical stratification in the benthic community structure, evidenced by a consistent decline in both abundance and biomass with increasing depth. The trophic structure is predominantly influenced by food availability, sediments, and currents. The trend of borealization in the Barents Sea biota is supported by recent distribution records of certain boreal benthic species and increased abundances of typical Atlantic zooplankton species. The results of our study establish a foundational dataset to aid in ongoing scientific inquiry, preservation efforts, and strategic decision-making with regards to the natural resources of the FJL region.	[Dvoretsky, Alexander G.; Dvoretsky, Vladimir G.] RAS, MMBI, Murmansk, Russia	Russian Academy of Sciences	Dvoretsky, AG (通讯作者)，RAS, MMBI, Murmansk, Russia.	dvoretskiya@mmbi.info	Dvoretsky, Alexander/AAP-6435-2021		Ministry of Science and Higher Education of the Russian Federation	Ministry of Science and Higher Education of the Russian Federation	This study was funded by the Ministry of Science and Higher Education of the Russian Federation. We thank three anonymous reviewers for their constructive feedback.	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J	Gu, HF; Zheng, J; Huang, SN; Morquecho, L; Krock, B; Shin, HH; Li, Z; Derrien, A; Mertens, KN				Gu, Haifeng; Zheng, Jing; Huang, Shuning; Morquecho, Lourdes; Krock, Bernd; Shin, Hyeon Ho; Li, Zhun; Derrien, Amelie; Mertens, Kenneth Neil			A new dinoflagellate Gonyaulax pospelovana with resting cysts resembling Spiniferites delicatu<i>s</i> and its biogeography and ecology revealed by DNA metabarcoding	PHYCOLOGIA			English	Article						Cyst-theca relationship; Gonyaulax spinifera; 18S V4; Tara Oceans; Yessotoxin	GULF-OF-CALIFORNIA; SP-NOV; PROTOCERATIUM RETICULATUM; DINOPHYCEAE; WATER; SEQUENCES; SEDIMENTS; LAGOON; BLOOM; BASIN	Extant species of the dinoflagellate genus Gonyaulax are capable of producing resting cysts morphologically similar to different cyst-based genera, and their cyst-theca relationships are far from resolved. Here we have carried out germination experiments on several living cysts that resemble Spiniferites delicatus from the subtropical regions of China and Mexico. Both cyst and theca morphology were examined by light and scanning electron microscopy. A new species, Gonyaulax pospelovana, is described, characterized by a cingulum displacement and an overhang of twice its width, and two short antapical spines. The cysts of G. pospelovana had a granular surface and gonal processes with petaloid tips. Maximum likelihood and Bayesian inference analyses based on LSU and SSU rRNA gene sequences revealed that strains identified as G. pospelovana were monophyletic, forming a sister clade to Gonyaulax ellegaardiae and several presumable strains of Gonyaulax spinifera. One Chinese strain and two Mexican strains of G. pospelovana were examined for yessotoxin production using LC-MS/MS, but were not found to produce a detectable amount of toxins. Metabarcoding targeting the 18S V4 rRNA gene was performed on monthly collected samples in Xiamen Bay, China. A ZOTU (zero-radius operational taxonomic units) was detected that was consistent with G. pospelovana. Its maximum abundance was recorded in summer. Additionally, an OTU was identified as G. pospelovana from the Tara Oceans metabarcoding data, which occurred in the Indian and Pacific oceans at temperatures ranging from 28(degrees)C to 31(degrees)C, suggesting that it is a warm water species.	[Gu, Haifeng; Zheng, Jing; Huang, Shuning] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Morquecho, Lourdes] Ctr Invest Biol Noroeste CIBNOR, Av IPN 195, La Paz 23096, Baja California, Mexico; [Krock, Bernd] Alfred Wegener Inst Polar & Marine Res, Handelshafen 12, D-27570 Bremerhaven, Germany; [Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Li, Zhun] Korea Res Inst Biosci & Biotechnol, Biol Resource Ctr, Korean Collect Type Cultures KCTC, Jeongeup 56212, South Korea; [Derrien, Amelie; Mertens, Kenneth Neil] Ifremer, LITTORAL, F-29900 Concarneau, France	Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; CIBNOR - Centro de Investigaciones Biologicas del Noroeste; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Korea Institute of Ocean Science & Technology (KIOST); Korea Research Institute of Bioscience & Biotechnology (KRIBB); Ifremer	Gu, HF (通讯作者)，Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China.; Mertens, KN (通讯作者)，Ifremer, LITTORAL, F-29900 Concarneau, France.	guhaifeng@tio.org.cn; kenneth.mertens@ifremer.fr	Krock, Bernd/ABB-7541-2020; Mertens, Kenneth/AAO-9566-2020; Morquecho, Lourdes/JPY-0626-2023; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Gu, Haifeng/0000-0002-2350-9171; Derrien, Amelie/0000-0001-9656-7850; Mertens, Kenneth/0000-0003-2005-9483; Shin, Hyeon Ho/0000-0002-9711-6717	National Key Research and Development Program of China; National Key Research and Development Program of China [2019YFE0124700]; National Natural Science Foundation of China [42076085]; Korean Culture Collection of Microalgae and Collaboration Center [NRF- 2022M3H9A1083416]; Regional Council of Brittany; General Council of Finistere; Urban Community of Concarneau-Cornouaille- Agglomeration; Collection of Marine Dinoflagellates (CODIMAR)	National Key Research and Development Program of China(National Key Research & Development Program of China); National Key Research and Development Program of China(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Korean Culture Collection of Microalgae and Collaboration Center; Regional Council of Brittany(Region Bretagne); General Council of Finistere(Region Bretagne); Urban Community of Concarneau-Cornouaille- Agglomeration; Collection of Marine Dinoflagellates (CODIMAR)	This work was supported by the the National Key Research and Development Program of China (2019YFE0124700), National Natural Science Foundation of China (42076085), and the Korean Culture Collection of Microalgae and Collaboration Center (NRF- 2022M3H9A1083416). The Sigma 300 FE-SEM used in this study was funded by The Regional Council of Brittany, the General Council of Finistere and the Urban Community of Concarneau-Cornouaille- Agglomeration. The isolation and maintenance in perpetuity of the strains from Mexico is supported by the Collection of Marine Dinoflagellates (CODIMAR) belonging to CIBNOR.	Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; Alvarez G, 2016, HARMFUL ALGAE, V58, P8, DOI 10.1016/j.hal.2016.07.006; AMADI I, 1992, BOT MAR, V35, P451, DOI 10.1515/botm.1992.35.5.451; Andersen R. A., 2005, Algal culturing techniques, P83; Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J	Head, MJ; Mertens, KN; Fensome, RA				Head, Martin J.; Mertens, Kenneth N.; Fensome, Robert A.			Dual nomenclature in organic-walled dinoflagellate cysts I: concepts, methods and applications	PALYNOLOGY			English	Article						Dinocyst; taxonomy; dual nomenclature; hybridised names; Lingulodinium; Lingulaulax	SP-NOV DINOPHYCEAE; THECA RELATIONSHIP; SPATIAL-DISTRIBUTION; GONYAULAX-BALTICA; RECENT SEDIMENTS; LIVING FOSSILS; SEA; PROPOSALS; TAXONOMY; NORTH	Dual nomenclature in dinoflagellates is supported under the current nomenclatural code for algae, fungi and plants and allows a fossil-defined (usually cyst) species to bear a name other than that of its equivalent non-fossil species, as established for example by incubation experiments. Two names can then apply to the same cyst morphotype, reflecting the separate but overlapping concepts and criteria used for fossil- and non-fossil taxa. Fossil-species are normally and logically assigned to fossil-genera and non-fossil species to non-fossil genera, a practice that facilitates dual nomenclature. Inconsistencies and ambiguities arise when binomials combine the names of fossil- with non-fossil taxa. Examples of this hybridised nomenclature and its consequences are examined, with problems identified and potential solutions discussed. Accordingly, a new non-fossil genus Lingulaulax is proposed with Lingulaulax polyedra (von Stein 1883) comb. nov. as its type and equivalent to the fossil-species Lingulodinium machaerophorum (Deflandre & Cookson 1955) Wall 1967, along with the new combination Lingulaulax milneri (Murray & Whitting 1899); the genus Lingulodinium Wall 1967 is retained in its exclusively fossil status. The non-fossil name Gonyaulax ellegaardiae Mertens et al. 2015 is validly published herein.	[Head, Martin J.] Brock Univ, Dept Earth Sci, St Catharines, ON L2S 3A1, Canada; [Mertens, Kenneth N.] Ifremer, LITTORAL, Concarneau, France; [Fensome, Robert A.] Nat Resources Canada, Bedford Inst Oceanog, Geol Survey Canada Atlantic, Dartmouth, NS, Canada	Brock University; Ifremer; Bedford Institute of Oceanography; Natural Resources Canada; Lands & Minerals Sector - Natural Resources Canada; Geological Survey of Canada	Head, MJ (通讯作者)，Brock Univ, Dept Earth Sci, St Catharines, ON L2S 3A1, Canada.	mjhead@brocku.ca	Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015	Head, Martin/0000-0003-3026-5483; Mertens, Kenneth/0000-0003-2005-9483	Natural Sciences and Engineering Research Council of Canada Discovery Grant; French National Research Agency (ANR) PhenoMap project [ANR-20-CE02-0025]; Natural Resources Canada [20230058]; Agence Nationale de la Recherche (ANR) [ANR-20-CE02-0025] Funding Source: Agence Nationale de la Recherche (ANR)	Natural Sciences and Engineering Research Council of Canada Discovery Grant(Natural Sciences and Engineering Research Council of Canada (NSERC)); French National Research Agency (ANR) PhenoMap project(Agence Nationale de la Recherche (ANR)Agence nationale pour le developpement de la recherche en sante (ANDRS)Agence Nationale Des Plantes Medicinales Et Aromatiques, ANPMA, Morocco); Natural Resources Canada(Natural Resources CanadaCanadian Forest Service); Agence Nationale de la Recherche (ANR)(Agence Nationale de la Recherche (ANR))	Haifeng Gu is thanked for providing the basis for Figure 4. MJH acknowledges support from a Natural Sciences and Engineering Research Council of Canada Discovery Grant. KNM was financially supported by the French National Research Agency (ANR) PhenoMap project, ANR-20-CE02-0025. RAF acknowledges the support of Natural Resources Canada; this is NRCan contribution number 20230058. We are most grateful to P.J. Mudie and the four journal reviewers, including V. Pospelova, all of whom provided helpful comments.	Abe T. 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J	Huang, D; Cheng, CQ; Qiu, JB; Huang, Y; Zhang, HY; Xu, ZH; Wu, SW; Huang, YT; Chen, J; Zou, LG; Yang, WD; Zheng, XF; Li, HY; Li, DW				Huang, Dan; Cheng, Cai-Qin; Qiu, Jiang-Bing; Huang, Yun; Zhang, Hao-Yun; Xu, Zhen-Hao; Wu, Si-Wei; Huang, Yi-Tong; Chen, Jian; Zou, Li-Gong; Yang, Wei-Dong; Zheng, Xiao-Fei; Li, Hong-Ye; Li, Da-Wei			Mechanistic insights into the effects of diuron exposure on Alexandrium pacificum	WATER RESEARCH			English	Article						(DCMU); Pollutant removal; Bioremediation; Alexandrium pacificum; Paralytic shellfish toxins; Cell growth; N-(3,4-dichlorophenyl)-N,N-dimethylurea	COASTAL WATERS; REMOVAL; CONTAMINATION; SEDIMENTS; TOXICITY; SEAWATER; IRGAROL; SEA; BIOSYNTHESIS; PESTICIDES	Diuron (N-(3,4-dichlorophenyl)-N,N-dimethylurea, DCMU), a ureic herbicide, is extensively used in agriculture to boost crop productivity; however, its extensive application culminates in notable environmental pollution, especially in aquatic habitats. Therefore, the present study investigated the effect of diuron on the dinoflagellate Alexandrium pacificum, which is known to induce harmful algal blooms (HAB), and its potential to biodegrade DCMU. Following a four-day DCMU exposure, our results revealed that A. pacificum proficiently assimilated DCMU at concentrations of 0.05 mg/L and 0.1 mg/L in seawater, attaining a complete reduction (100 % efficiency) after 96 h for both concentrations. Moreover, evaluations of paralytic shellfish toxins content indicated that cells subjected to higher DCMU concentrations (0.1 mg/L) exhibited reductions of 73.4 %, 86.7 %, and 75 % in GTX1, GTX4, and NEO, respectively. Exposure to DCMU led to a notable decrease in A. pacificum's photosynthetic efficacy, accompanied by increased levels of reactive oxygen species (ROS) and suppressed cell growth, with a growth inhibition rate of 41.1 % at 72 h. Proteomic investigations pinpointed the diminished expression levels of specific proteins like SxtV and SxtW, linked to paralytic shellfish toxins (PSTs) synthesis, as well as key proteins associated with Photosystem II, namely PsbA, PsbD, PsbO, and PsbU. Conversely, proteins central to the cysteine biosynthesis pathways exhibited enhanced expression. In summary, our results preliminarily resolved the molecular mechanisms underlying the response of A. pacificum to DCMU and revealed that DCMU affected the synthesis of PSTs. Meanwhile, our data suggested that A. pacificum has great potential in scavenging DCMU.	[Huang, Dan; Cheng, Cai-Qin; Huang, Yun; Zhang, Hao-Yun; Xu, Zhen-Hao; Huang, Yi-Tong; Zou, Li-Gong; Yang, Wei-Dong; Zheng, Xiao-Fei; Li, Hong-Ye; Li, Da-Wei] Jinan Univ, Affiliated Hosp 1, Dept Sports Med,Guangzhou Key Lab Precis Orthoped, Guangdong Prov Key Lab Speed Capabil, Guangzhou 510630, Peoples R China; [Wu, Si-Wei] Jinan Univ, Guangdong Higher Educ Inst, Coll Life Sci & Technol, Key Lab Eutrophicat & Red Tide Prevent, Guangzhou 510632, Peoples R China; [Qiu, Jiang-Bing] Ocean Univ China, Coll Environm Sci & Engn, Qingdao 266100, Peoples R China; [Chen, Jian] Zhuhai Int Travel Healthcare Ctr, State Key Lab Med Vector Surveillance, Zhuhai 519020, Guangdong, Peoples R China	Jinan University; Jinan University; Ocean University of China	Li, DW (通讯作者)，Jinan Univ, Affiliated Hosp 1, Dept Sports Med,Guangzhou Key Lab Precis Orthoped, Guangdong Prov Key Lab Speed Capabil, Guangzhou 510630, Peoples R China.	daweili@jnu.edu.cn	Huang, Yitong/HZI-4904-2023; Yang, Weidong/ABA-5036-2021; J, Qiu/AAY-2929-2020; 孙, 笑川/GWN-2355-2022; zheng, xiaofei/IUN-8791-2023; zhang, hao/KXQ-8149-2024	Da-Wei, Li/0000-0002-1452-0264; Huang, Dan/0000-0001-7853-502X	Natural Science Foundation of China [31870027, 51908244, 32100080]; Guangdong Natural Science Foundation [2019A1515110390, 2021A1515011486]; Fundamental Research Funds for the Central Universities [21620337]	Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Guangdong Natural Science Foundation(National Natural Science Foundation of Guangdong Province); Fundamental Research Funds for the Central Universities(Fundamental Research Funds for the Central Universities)	DWL is thankful to the Natural Science Foundation of China (32100080) , Guangdong Natural Science Foundation (2019A1515110390, 2021A1515011486) and the Fundamental Research Funds for the Central Universities for the research funding (21620337) . HYL acknowledges the Natural Science Foundation of China (31870027, 51908244) for the research grant. We would like to thank Editage ( www.editage.cn) for English language editing.	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J	García-Moreiras, I; Hatherly, M; Zonneveld, K; Dubert, J; Nolasco, R; Santos, AI; Oliveira, A; Moita, T; Oliveira, PB; Magalhaes, JM; Amorim, A				Garcia-Moreiras, Iria; Hatherly, Melissa; Zonneveld, Karin; Dubert, Jesus; Nolasco, Rita; Santos, Ana Isabel; Oliveira, Anabela; Moita, Teresa; Oliveira, Paulo B.; Magalhaes, Jorge M.; Amorim, Ana			New physical and biological evidence of lateral transport affecting dinoflagellate cyst distribution in the benthic nepheloid layer along a land-sea transect off Figueira da Foz (Atlantic Iberian margin)	FRONTIERS IN MARINE SCIENCE			English	Article						benthic nepheloid layer; dinoflagellate cysts; cyst reservoir; advection; coastal ecosystems; Portuguese margin	HARMFUL ALGAL BLOOMS; GYMNODINIUM-CATENATUM; ALEXANDRIUM-CATENELLA; RECENT SEDIMENTS; LINGULODINIUM-POLYEDRUM; VERTICAL MIGRATION; SHELLFISH TOXICITY; UPWELLING SYSTEMS; RIVER PLUMES; RIAS-BAIXAS	Introduction The production of resting cysts is a key dispersal and survival strategy of many dinoflagellate species. However, little is known about the role of suspended cysts in the benthic nepheloid layer (BNL) in the initiation and decline of planktonic populations.Methods In September 2019, sampling of the dinoflagellate cyst community at different water depths in the water column and in the bottom sediments, and studies of spatio-temporal changes in physical properties (temperature, salinity, density and suspended sediment concentration), were carried out along a land-sea transect off Figueira da Foz (NW Portugal) to investigate the dinoflagellate cyst distribution and the factors (physical and biological) affecting it. A clustering analysis was used to compare the BNL and sediment cyst records with the cyst rain recorded by a sediment trap at a fixed station. Furthermore, Lagrangian particle experiments enabled simulating cyst trajectories in the BNL 5 and 10 days before sampling and assessing cross-shore, vertical and alongshore transport within the studied region.Results A well-developed BNL was present during the survey, which covered a change from active (14th of September) to relaxed (19th of September) upwelling conditions. Organic-walled dinoflagellate cysts were dominant in all samples, although calcareous dinoflagellate cysts consistently occurred (at low abundances). High proportions of full cysts were observed in the BNL, of which a significant portion was viable as shown by excystment experiments. Moreover, BNL cyst records collected on the 19th of September along the land-sea transect were similar to the sediment trap cyst record but greatly differed from sediment cyst records. The heterotrophic small spiny brown cysts (SBC) and cysts of the autotrophic yessotoxin-producer Protoceratium reticulatum notably increased during the survey, in the BNL and in the water column above.Discussion The comparison of the BNL, surface sediment and sediment trap cyst records supported that the main origin of cysts in the BNL was the recent production in the water column. The spatial coincidences in the distribution of cysts and vegetative cells of Protoceratium reticulatum also supported that full cysts in the water column were being produced in surface waters. New data evidenced the presence of a significant reservoir of viable cysts in the BNL that have the potential to seed new planktonic blooms. Furthermore, back-track particle modelling evidenced that alongshore advection was the main physical mechanism controlling cyst dynamics in the BNL during most part of the survey period, being particularly intense in coastal stations (<100 m depth). Consequently, the sediment cyst signal is a mixture of locally and regionally produced cysts. We provide multi-disciplinary data evidencing that cysts recently formed in the photic zone can be laterally advected within the studied region through the BNL, contributing to a better understanding of the role of the BNL in cyst dynamics and tracing the seed sources of the new blooms.	[Garcia-Moreiras, Iria] Univ Vigo, CIM Ctr Invest Marina, Vigo, Spain; [Garcia-Moreiras, Iria] Univ Vigo, Dept Biol Vexetal Ciencias Solo, Fac Ciencias, Vigo, Spain; [Hatherly, Melissa; Amorim, Ana] Univ Lisbon, MARE Marine & Environm Sci Ctr, Fac Ciencias, ARNET Aquat Res Network, Lisbon, Portugal; [Hatherly, Melissa; Amorim, Ana] Univ Lisbon, Fac Ciencias, Dept Biol Vegetal, Lisbon, Portugal; [Zonneveld, Karin] Univ Bremen, Ctr Marine Environm Sci, MARUM, Bremen, Germany; [Zonneveld, Karin] Univ Bremen, Geosci Dept, Bremen, Germany; [Dubert, Jesus; Nolasco, Rita] Univ Aveiro, Ctr Environm Marine Studies CESAM, Dept Fis, Aveiro, Portugal; [Dubert, Jesus; Nolasco, Rita] Univ Aveiro, Ctr Estudos Ambiente & Do Mar, Aveiro, Portugal; [Dubert, Jesus; Nolasco, Rita] CSIC, Inst Invest Marinas, CSIC, IIM, Vigo, Spain; [Santos, Ana Isabel; Oliveira, Anabela] Inst Hidrog IH, Marine Geol Div, Lisbon, Portugal; [Oliveira, Anabela] Univ Lisbon, Fac Ciencias, Inst Dom Luiz, Lisbon, Portugal; [Moita, Teresa] Univ Algarve, CCMAR Ctr Ciencias Mar, Faro, Portugal; [Oliveira, Paulo B.] IPMA Inst Portugues Mar & Atmosfera, Alges, Portugal; [Magalhaes, Jorge M.] Univ Porto, Interdisciplinary Ctr Marine & Environm Res, CIIMAR, Porto, Portugal; [Magalhaes, Jorge M.] Univ Porto, Fac Sci, Dept Geosci Environm & Spatial Planning DGAOT, Porto, Portugal	Universidade de Vigo; Universidade de Vigo; Universidade de Lisboa; Universidade de Lisboa; University of Bremen; University of Bremen; Universidade de Aveiro; Universidade de Aveiro; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM); Universidade de Lisboa; Universidade do Algarve; Instituto Portugues do Mar e da Atmosfera; Universidade do Porto; Universidade do Porto	García-Moreiras, I (通讯作者)，Univ Vigo, CIM Ctr Invest Marina, Vigo, Spain.; García-Moreiras, I (通讯作者)，Univ Vigo, Dept Biol Vexetal Ciencias Solo, Fac Ciencias, Vigo, Spain.; Amorim, A (通讯作者)，Univ Lisbon, MARE Marine & Environm Sci Ctr, Fac Ciencias, ARNET Aquat Res Network, Lisbon, Portugal.; Amorim, A (通讯作者)，Univ Lisbon, Fac Ciencias, Dept Biol Vegetal, Lisbon, Portugal.	iriagamo@uvigo.es; aaferreira@ciencias.ulisboa.pt	Magalhaes, Jorge/AAS-1999-2020; Oliveira, Anabela/L-8373-2013; Dubert, Jesus/B-7517-2008; GARCIA-MOREIRAS, IRIA/H-4627-2015; Amorim, Ana/AAA-2615-2020; Calixto de Jesus Moita Garnel, Maria Teresa/M-4039-2013	Oliveira, Anabela/0000-0001-5098-3939; GARCIA-MOREIRAS, IRIA/0000-0001-8713-0374; Dubert, Jesus/0000-0002-3338-6777; Amorim, Ana/0000-0002-9612-4280; Oliveira, Paulo/0000-0001-6838-7377; Calixto de Jesus Moita Garnel, Maria Teresa/0000-0002-8995-7516	EU ERDF funds; Fundaco para a Ciencia e Tecnologia, I.P.(FCT, I.P.); CESAM by FCT/MCTES [UIDP/04423/2020, LISBOA-01-0145-FEDER-031265]; Xunta de Galicia, Spain [UIDB/04292/2020]; Fundaco para a Ciencia e Tecnologia [UIDP/04292/2020, UIDP/50017/2020+UIDB/50017/2020+LA/P/0094/2020]; HABWAVE project; AQUIMAR project MAR2020; FCT through the strategic projects; The project MIWAVES;  [LA/P/0069/2020];  [UIDB/04326/2020];  [ED481B-2019-074];  [UIDB/04423/2020];  [MAR-02.01.01-FEAMP-017]	EU ERDF funds; Fundaco para a Ciencia e Tecnologia, I.P.(FCT, I.P.); CESAM by FCT/MCTES(Fundacao para a Ciencia e a Tecnologia (FCT)); Xunta de Galicia, Spain(Xunta de Galicia); Fundaco para a Ciencia e Tecnologia(Fundacao para a Ciencia e a Tecnologia (FCT)); HABWAVE project; AQUIMAR project MAR2020; FCT through the strategic projects; The project MIWAVES; ; ; ; ; 	The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work is a contribution to HABWAVE project LISBOA-01-0145-FEDER-031265, co-funded by EU ERDF funds, within the PT2020 Partnership Agreement and Compete 2020, and national funds through Fundac & atilde;o para a Ciencia e Tecnologia, I.P.(FCT, I.P.) also to AQUIMAR project MAR2020; MAR-02.01.01-FEAMP-017. This study had the support of FCT through the strategic projects UIDB/04292/2020 and UIDP/04292/2020 awarded to MARE and through project LA/P/0069/2020 granted to the Associate Laboratory ARNET, the strategic project UIDB/04326/2020 awarded to CCMAR. Thanks are also due for the financial support to CESAM by FCT/MCTES (UIDP/50017/2020+UIDB/50017/2020+LA/P/0094/2020), Partnership Agreement and Compete 2020. IG-M was supported by a postdoctoral fellowship from Xunta de Galicia, Spain (ref. ED481B-2019-074, 2019). 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DEC 8	2023	10								1270343	10.3389/fmars.2023.1270343	http://dx.doi.org/10.3389/fmars.2023.1270343			30	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	DV8M9		Green Published, gold			2025-03-11	WOS:001134948900001
J	Regaudie-de-Gioux, A; Latorre, L; Basterretxea, G				Regaudie-de-Gioux, A.; Latorre, L.; Basterretxea, G.			Phytoplankton metabolism in a stratified nearshore ecosystem with recurrent harmful algal blooms (HABs)	JOURNAL OF PLANKTON RESEARCH			English	Article						HABs; primary production; respiration; nearshore waters; Mediterranean Sea	TIME-SERIES; ALEXANDRIUM-MINUTUM; RECENT SEDIMENTS; CLIMATE-CHANGE; RESTING CYSTS; GROWTH-RATES; COASTAL; VARIABILITY; NITROGEN; MICROZOOPLANKTON	The coastal ocean is experiencing changes in its physical and chemical properties that strongly affect planktonic metabolism assemblages and, in some cases, favor the occurrence of harmful algal blooms (HABs). Here we analyze the variations in phytoplankton biomass, gross and net primary production (NCP) as well as community respiration (CR) at two nearshore sampling sites (P1 and P2) located at a Mediterranean beach where high biomass HABs are recurrent. At P1, the most exposed site, phytoplankton chlorophyll was generally low, whereas dinoflagellates outbreaks of the genus Gymnodinium and Alexandrium were recurrent during summer at P2 spanning for 10-20 days. During bloom episodes, NCP increased up to 10-fold (>80 mmol O2 m(-3) day(-1)). Contrastingly, variation in CR only reached an average of 1.8-fold the rates of non-bloom conditions. Remarkably, although the enhanced NCP:CR ratio suggests net autotrophic population growth, production per unit biomass at P1 and P2 was not significantly different. Our results indicate that although summer conditions favor the necessary primary production enhancement leading to HAB occurrences, the short-term dynamics driving high biomass episodes are not driven by metabolic variations but instead are governed by subtle accumulative processes of some flagellate species in the nutrient-rich nearshore environment.	[Regaudie-de-Gioux, A.] Ifremer Dyneco Pelagos, FRench Inst Sea Res, 1625 Route Sainte Anne, F-29280 Plouzane, France; [Latorre, L.; Basterretxea, G.] CSIC, UIB, Imedea, Dept Marine Ecol, Miquel Marques 21, Esporles 07190, Balearic Island, Spain	Ifremer; Consejo Superior de Investigaciones Cientificas (CSIC); ATTITUS Educacao; Universitat de les Illes Balears	Regaudie-de-Gioux, A (通讯作者)，Ifremer Dyneco Pelagos, FRench Inst Sea Res, 1625 Route Sainte Anne, F-29280 Plouzane, France.	aregaudi@ifremer.fr; llatorreconservation@gmail.com; gotzon@imedea.uib-csic.es	Regaudie-de-Gioux, Aurore/AAC-1816-2022; Basterretxea, Gotzon/D-2314-2011; Regaudie-de-Gioux, Aurore/G-8116-2014	Basterretxea, Gotzon/0000-0001-7466-1360; Regaudie-de-Gioux, Aurore/0000-0001-9015-8589	HYDROALGAL [RTC -2016-4812-5]; Incorporacion de personal investigador -Ministry of Innovation, Research and Tourism of the Balearic Island Government	HYDROALGAL; Incorporacion de personal investigador -Ministry of Innovation, Research and Tourism of the Balearic Island Government	This research was financed by HYDROALGAL (RTC -2016-4812-5) project and partially carried out within the framework of the activities of the Spanish Government through the "Maria de Maeztu Centre of Excellence" accreditation to IMEDEA (CSIC-UIB) (CEX2021-001198-M). A.R-de-G. was supported by a post-doctoral fellowship "Incorporacion de personal investigador" funded by the Ministry of Innovation, Research and Tourism of the Balearic Island Government.	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Plankton Res.	DEC 8	2023	45	6					785	793		10.1093/plankt/fbad039	http://dx.doi.org/10.1093/plankt/fbad039		NOV 2023	9	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	AC5B8					2025-03-11	WOS:001109217800001
J	Curren, E; Leong, SCY				Curren, Emily; Leong, Sandric Chee Yew			Plankton assemblages from microplastics of tropical coastal environments reveal high diversity and evidence of toxic species	MARINE ENVIRONMENTAL RESEARCH			English	Article						Transport; Vector; Microplastics; Community; Singapore; Sustainability	CYANOBACTERIUM LYNGBYA-MAJUSCULA; HARMFUL ALGAL BLOOMS; DOCOSAHEXAENOIC-ACID; PLASTIC DEBRIS; BACTERIAL ASSEMBLAGES; MICROBIAL COMMUNITIES; RED-TIDE; MARINE; ALEXANDRIUM; SHELLFISH	Microplastics are a major constituent of plastic waste and are of an increasing global concern. Although microplastics are prevalent in marine ecosystems, the characterisation of plankton communities has been largely neglected in this aspect, especially in tropical ecosystems. To better understand the role of microplastics as a carrier of harmful plankton in marine ecosystems, epiplastic plankton communities in tropical marine ecosystems were studied from beach sediments along the Johor and Singapore Straits. Complementary analysis of microscopy and high throughput sequencing of the 16S rRNA (V3-V4) and 18S (V4) rRNA regions provided evidence that the plastisphere provided an appropriate environment to host a wide range of planktonic organisms. An average of 781 OTUs were identified across the three sampling sites. The structures of plankton communities were distinct across the sampling sites and were generally dominated by dinoflagellates, fungi and chlorophytes. We demonstrate that marine microplastics serve as microhabitats that are a host to harmful phytoplankton species, including viable resting cysts of dinoflagellates. Furthermore, plastics isolated from the location with the greatest anthropogenic influence demonstrated the greatest plankton diversity. This study presents evidence of diverse toxic plankton species present on the plastisphere and highlights its importance as a vector of the transport of harmful opportunistic species in relation to anthropogenic influence, in the marine environment.	[Curren, Emily; Leong, Sandric Chee Yew] Natl Univ Singapore, Trop Marine Sci Inst, St Johns Isl Natl Marine Lab, 18 Kent Ridge Rd, Singapore 119227, Singapore	National University of Singapore	Curren, E (通讯作者)，Natl Univ Singapore, Trop Marine Sci Inst, St Johns Isl Natl Marine Lab, 18 Kent Ridge Rd, Singapore 119227, Singapore.	e0013223@u.nus.edu	Leong, Sandric/F-5304-2013		National University of Singapore	National University of Singapore(National University of Singapore)	This work was partially supported by funds awarded to Dr. Sandric Leong through the National University of Singapore and was made possible because of the support of members of Team HABs.	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Environ. Res.	JAN	2024	193								106251	10.1016/j.marenvres.2023.106251	http://dx.doi.org/10.1016/j.marenvres.2023.106251		NOV 2023	10	Environmental Sciences; Marine & Freshwater Biology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Toxicology	Z5UH4	37952304				2025-03-11	WOS:001112717600001
J	Suzuki, KW; Dinh, HT				Suzuki, Keita W.; Dinh, Hanh T.			Bottom-up effects of variable winter weather conditions on phytoplankton dynamics in an enclosed bay: implications for ecological responses to climate change	JOURNAL OF PLANKTON RESEARCH			English	Article						diatom bloom; grazing pressure; nutrient supply; snowmelt; wind mixing	COASTAL PLANKTONIC DIATOMS; RESTING-STAGE CELLS; MAIZURU BAY; SKELETONEMA BACILLARIOPHYCEAE; SPECIES COMPOSITION; FOOD CONCENTRATION; NERITIC COPEPODS; ACARTIA-OMORII; FEEDING RATES; SPRING BLOOM	To investigate phytoplankton dynamics in response to variable winter weather conditions along the Sea of Japan, we conducted daily sampling in enclosed Maizuru Bay in five winters and found distinctive differences between 2016/2017 and 2018/2019. A clear diatom bloom occurred through the water column in moderately cold/snowy 2016/2017, whereas in exceptionally warm/snow-free 2018/2019 a small peak of dinoflagellates occurred only in the subsurface. Nutrient concentrations changed drastically depending on freshwater discharge and diatom growth in 2016/2017, showing a contrast with constant nutrient concentrations in 2018/2019. Copepod densities were similar to 10 times higher in 2016/2017 than in 2018/2019, indicating bottom-up effects in 2016/2017. As the absence of a diatom bloom from 2018/2019 can be attributed neither to nutrient limitation nor to grazing pressure, we hypothesize that wind mixing is a key factor triggering a diatom bloom. Within the five winters, clear diatom blooms were found only after strong winds and heavy precipitation including snowfall. Wind mixing would possibly promote the germination/rejuvenation of viable resting stage cells as inocula for a diatom bloom, while the growth and maintenance are supported by nutrient supply through freshwater discharge. In Maizuru Bay, winter production is likely activated by harsh weather conditions characteristic of this region.	[Suzuki, Keita W.] Kyoto Univ, Field Sci Educ & Res Ctr, Maizuru Fisheries Res Stn, Maizuru 6250086, Japan; [Suzuki, Keita W.; Dinh, Hanh T.] Kyoto Univ, Grad Sch Global Environm Studies, Lab Ecosyst Linkages & Human Soc, Oiwake Cho,Sakyo Ku, Kyoto 6068502, Japan	Kyoto University; Kyoto University	Suzuki, KW (通讯作者)，Kyoto Univ, Field Sci Educ & Res Ctr, Maizuru Fisheries Res Stn, Maizuru 6250086, Japan.; Suzuki, KW (通讯作者)，Kyoto Univ, Grad Sch Global Environm Studies, Lab Ecosyst Linkages & Human Soc, Oiwake Cho,Sakyo Ku, Kyoto 6068502, Japan.	suzuki.keita.3r@kyoto-u.ac.jp; dthanh@ria1.org			We express our gratitude to the present and former staff and students of Maizuru Fisheries Research Station of Kyoto University for their assistance with field sampling and laboratory analysis. Monitoring data of temperature and salinity were kindly provid; Kyoto Fishery Cooperative Association; Fuji SLI Chlorophyll Laboratory; Grants-in-Aid for Scientific Research [20K06206] Funding Source: KAKEN	We express our gratitude to the present and former staff and students of Maizuru Fisheries Research Station of Kyoto University for their assistance with field sampling and laboratory analysis. Monitoring data of temperature and salinity were kindly provid; Kyoto Fishery Cooperative Association; Fuji SLI Chlorophyll Laboratory; Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	We express our gratitude to the present and former staff and students of Maizuru Fisheries Research Station of Kyoto University for their assistance with field sampling and laboratory analysis. Monitoring data of temperature and salinity were kindly provided by Kyoto Fishery Cooperative Association. High-purity chlorophyll a was generously offered as an analytical standard by Fuji SLI Chlorophyll Laboratory.	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Plankton Res.	DEC 8	2023	45	6					815	831	fbad046	10.1093/plankt/fbad046	http://dx.doi.org/10.1093/plankt/fbad046		NOV 2023	17	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	AC5B8		Green Submitted			2025-03-11	WOS:001103529000001
J	Kim, JH; Park, BS; Kim, JH				Kim, Joo-Hwan; Park, Bum Soo; Kim, Jin Ho			Comprehensive understanding of the life history of harmful raphidophyte <i>Heterosigma akashiwo</i>: Integrating <i>in situ </i>and <i>in vitro</i> observations	HARMFUL ALGAE			English	Article						Heterosigma akashiwo; Harmful alga; Raphidophyceae; Life history; Life cycle; Sexual reproduction; Hologamete; Homothallism; Zygote (large cell); Multiple cells; Cell cluster; Cyst cluster	RED TIDE FLAGELLATE; CHATTONELLA-MARINA RAPHIDOPHYCEAE; DINOFLAGELLATE COCHLODINIUM-POLYKRIKOIDES; MARGALEF DINOPHYCEAE; OVATA RAPHIDOPHYCEAE; MOLECULAR PHYLOGENY; PIGMENT COMPOSITION; CYST FORMATION; GEN.-NOV.; MORPHOLOGY	Heterosigma akashiwo (Raphidophyceae) is widely recognized as a species responsible for harmful algal blooms worldwide. The species has long been speculated to possess a more complex life history, attributed to the diverse morphological variations observed during cell cultivation. However, the understanding of its life history has remained insufficient due to limitations in observing transitions between life cycle stages in vitro and challenges associated with in situ investigations. In this study, a combination of in vitro (laboratory-based) and in situ (field -based) observations was employed to define the life cycle stages of H. akashiwo and elucidate the pathways of transition between these stages. Notably, novel homothallic sexual reproduction processes involving the fusion of hologametes and the subsequent formation of zygotes were observed for the first time in vitro. These zygotes were found to either divide into vegetative cells (Pathway I) or undergo enlargement, resulting in the formation of multiple cells with multiple nuclei (Pathway II). Furthermore, this study provides the first documentation of large cells and cell clusters in situ , including intermediate stages referred to as large cells with ongoing cyto-plasmic division that serve as a bridge between these two cell types. The observed zygotes in vitro exhibited a large size (21.9-51.8 mu m) and multinucleated characteristics, similar to the large cells (38.2-45.8 mu m) and cell clusters observed in situ. This finding suggests that the large cells observed in situ were zygotes undergoing cell division to form cell clusters (Pathway III). Moreover, based on the striking similarities in cell morphology and nuclear size between the cells comprising the cell cluster (2.7-4.4 mu m) and the cyst clusters of this species, along with the synchronized germination characteristics of cyst clusters, it is proposed that the cell cluster serves as a precursor to cysts. By integrating the in situ and in vitro observations, this study provides a comprehensive un-derstanding of the previously poorly understood life history of H. akashiwo.	[Kim, Joo-Hwan; Park, Bum Soo] Hanyang Univ, Coll Nat Sci, Dept Life Sci, Seoul 04763, South Korea; [Kim, Joo-Hwan] Minist Environm, Govt Complex Sejong, Sejong 30103, South Korea; [Park, Bum Soo] Hanyang Univ, Hanyang Inst Biosci & Biotechnol, Seoul 04763, South Korea; [Park, Bum Soo] Hanyang Univ, Res Inst Convergence Basic Sci, Seoul 04763, South Korea; [Kim, Jin Ho] Hanyang Univ, Hanyang Inst Adv BioConvergence, Seoul 04763, South Korea; [Kim, Jin Ho] Jeju Natl Univ, Coll Ocean Sci, Dept Earth & Marine Sci, Jeju 63243, South Korea	Hanyang University; Hanyang University; Hanyang University; Hanyang University; Jeju National University	Park, BS (通讯作者)，Hanyang Univ, Coll Nat Sci, Dept Life Sci, Seoul 04763, South Korea.; Kim, JH (通讯作者)，Jeju Natl Univ, Coll Ocean Sci, Dept Earth & Marine Sci, Jeju 63243, South Korea.	parkbs@hanyang.ac.kr; kimj@jejunu.ac.kr	Kim, Se Young/GSE-5296-2022; PARK, Bum Soo/W-3178-2017	Kim, Joo-Hwan/0000-0002-2172-9357; PARK, Bum Soo/0000-0002-5441-6779	National Research Foundation of Korea (NRF) - Korea Government (MSIT) [2022R1C1C1003582, RS -2023-00209356]; Marine Biotics - Ministry of Ocean and Fisheries, Korea [20210469]; Basic Science Research Program to Research Institute for Basic Sciences (RIBS) of Jeju National University through the National Research Foundation of Korea (NRF) - Ministry of Education [2019R1A6A1A10072987]; Korea Institute of Marine Science & Technology (KIMST) - Ministry of Oceans and Fisheries [RS -2023-00256330]	National Research Foundation of Korea (NRF) - Korea Government (MSIT)(National Research Foundation of KoreaMinistry of Science, ICT & Future Planning, Republic of KoreaMinistry of Science & ICT (MSIT), Republic of Korea); Marine Biotics - Ministry of Ocean and Fisheries, Korea; Basic Science Research Program to Research Institute for Basic Sciences (RIBS) of Jeju National University through the National Research Foundation of Korea (NRF) - Ministry of Education(Ministry of Education (MOE), Republic of KoreaNational Research Foundation of Korea); Korea Institute of Marine Science & Technology (KIMST) - Ministry of Oceans and Fisheries(Korea Institute of Marine Science & Technology Promotion (KIMST))	From the outset of this research, we extend our profound respect and heartfelt gratitude to Dr. Myung-Soo Han, who consistently provided valuable insights and imparted invaluable inspiration. This research was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea Government (MSIT) (No. 2022R1C1C1003582 and RS -2023-00209356) , the Marine Biotics project (20210469) funded by the Ministry of Ocean and Fisheries, Korea, the Basic Science Research Program to Research Institute for Basic Sciences (RIBS) of Jeju National University through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2019R1A6A1A10072987) , and the Korea Institute of Marine Science & Technology (KIMST) funded by the Ministry of Oceans and Fisheries (RS -2023-00256330, Development of risk managing technology tackling ocean and fisheries crisis around Korean Peninsula by Kuroshio Current) .	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J	Persson, A; Smith, BC; Alix, JH; Wikfors, GH				Persson, Agneta; Smith, Barry C.; Alix, Jennifer H.; Wikfors, Gary H.			Properties and Behavior of Sexual Life Stages Underlying Dinoflagellate HAB Events of Cyst-Producing Species That Disrupt Fisheries and Aquaculture	REVIEWS IN FISHERIES SCIENCE & AQUACULTURE			English	Editorial Material; Early Access						Dinoflagellate; gamete; HAB; life cycle; resting cyst; zygote	ALEXANDRIUM-FUNDYENSE; GYMNODINIUM-CATENATUM; MARINE DINOFLAGELLATE; GONYAULAX-TAMARENSIS; RED TIDE; VERTICAL MIGRATION; KARENIA-BREVIS; RESTING CYSTS; CYCLE STAGES; C2 TOXIN	Harmful algal blooms (HAB) are natural environmental occurrences that can disrupt ecosystem function that supports fisheries and aquaculture, as well as rendering harvested seafood, especially shellfish, unsafe for consumption by humans or wildlife species. Many dinoflagellates that cause HAB have a life cycle with a sexually produced resting stage called the resting cyst. The resting cyst enables the species to persist in an area where conditions for growth vary seasonally. These species often are found as vegetative stages only during a short period of the year. Most of the time is spent dormant or quiescent as thick-walled resting cysts with very low metabolic activity. By summarizing findings from an iterative series of research projects investigating different parts of the sexual life cycle, a more complete picture of the role of the sexual stages emerges, illuminating the consequences of life cycle within the environmental context. Gametes, the sexual stages, are formed at the end of the growing season in response to environmental signals which remain largely unknown. Gametes have lower cell-specific density and different swimming behavior compared to vegetative cells. Specifically, vegetative cells perform daily vertical migrations; whereas, gametes accumulate in patterns influenced by lower cell-specific density, changed swimming behavior, and attraction to each other. The patterns and patches of accumulated gametes (sexually induced cells) aggregate into larger and larger patterns. Together with large-scale hydrographic water movements, such as upwelling, water stratification, and fronts, cells originating from a low vegetative cell density background distribution assemble and become concentrated within a constricted space, thus forming a dense "bloom." This process is distinctly different from the paradigm of blooms resulting from simple, vegetative cell divisions. Undisturbed blooms of cyst-producing dinoflagellate gametes end with gamete fusion into diploid zygotes that transform into resting cysts. The resting cysts sink according to shape and cell-specific density into the silt fraction of the sediment. Cyst preservation depends upon the oxygenation level of the sediment and the presence of fauna. Hypoxic/anoxic conditions lower cyst mortality from benthic grazers. The reestablishment of motile, vegetative cells occurs under seasonally favorable conditions, and successful population growth depends upon environmental conditions, such as weather and nutrient availability. Factors that increase HAB risks of resting cyst-producing dinoflagellates are eutrophication leading to high cell numbers and high cyst preservation in hypoxic benthic zones. Hydrographic factors causing increased cell accumulation also are important, and intensified water stratification can amplify encystment success. These insights underscore mechanisms by which climate change is affecting HAB ecology and subsequent effects upon marine and coastal fisheries and aquaculture.	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Fish. Sci. Aquac..	2023 OCT 9	2023										10.1080/23308249.2023.2268715	http://dx.doi.org/10.1080/23308249.2023.2268715		OCT 2023	18	Fisheries	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries	W4XD2					2025-03-11	WOS:001091661000001
J	Matsuda, R; Makabe, R; Sano, M; Takao, S; Moteki, M; Kurosawa, N				Matsuda, R.; Makabe, R.; Sano, M.; Takao, S.; Moteki, M.; Kurosawa, N.			Fecal Pellet-Like <i>Gyrodinium</i> Species in Sinking Particles: Newly Found Potential Contributors for Carbon Export in the Antarctic Seasonal Ice Zone	JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES			English	Article						Southern Ocean; biological pump; Gyrodinium; drifting sediment trap	COMB. NOV. DINOPHYCEAE; HETEROTROPHIC DINOFLAGELLATE; BIOLOGICAL PUMP; SOUTHERN-OCEAN; MARINE SNOW; ZOOPLANKTON; COPEPOD; FLUX; SEA; ULTRASTRUCTURE	Fecal pellets (FPs) are generated by various species and have gained attention as contributors to the biological carbon pump. Metazoans and protozoans are known as FP and minipellet-producers, respectively. Herein, we discovered fecal pellet-like dinoflagellates (FLDs) in the seasonal sea ice zone in the Southern Ocean. The size and form of these FLDs were similar to those of zooplankton oval FPs. However, due to their appearance, they have been misclassified as FPs rather than dinoflagellates, leading to potential oversight of their role in the carbon cycle. Thus, we aimed to identify FLD cells at the species level and examine the impact of FLDs on flux estimation of particulate organic carbon (POC). Our findings are as follows: first, FLD cells were identified as Gyrodinium rubrum and Gyrodinium heterogrammum through 18S rRNA gene sequencing. Second, FLDs can potentially excrete larger FPs than minipellets. Third, the sinking rate of FLDs is higher than that of other protozoa and dinoflagellate cysts. Finally, a maximum of 12 mgC m(-2) day(-1) of the POC flux can be attributed to FLDs (representing 32% of POC flux). These results suggest that FLDs are important drivers not only for the microbial loop but also for the biological carbon pump. In future projections of carbon sequestration, the contribution of metazoans to carbon export must be considered, but not that of FLDs. Their unknown physiological and ecological characteristics, especially including the responses to climate changes, must be urgently investigated for future projections of carbon sequestration in the Southern Ocean. Plain Language Summary Zooplankton feed on phytoplankton cells and excrete fecal pellets (FPs). FPs have gained attention as carbon carriers from the surface to the deep ocean because of their high carbon contents and sinking rate. Previous studies have sampled FPs using sediment traps and estimated carbon fluxes through microscopic observations to better understand the ocean carbon cycle. Here, we report the discovery of a dinoflagellate that closely resembles FP and was captured using a drifting sediment trap. This dinoflagellate has been named "fecal-pellet-like dinoflagellate (FLD)." It is believed that FLD cells have been misclassified as FPs given their appearance. Our findings indicated that a maximum of 12 mgC m(-2) day(-1) (representing 32% of the particulate organic carbon flux at 50 m depths during the summer productive season) may be attributed to FLD carbon flux. This result suggests that FLD cells serve as potential contributors for carbon export, contrary to the knowledge that heterotrophic dinoflagellates had been known as one of the dominant microbial loop components. Studies on FLDs are essential to understand the Southern Ocean carbon cycle.	[Matsuda, R.; Kurosawa, N.] Soka Univ, Grad Sch Sci & Engn, Dept Environm Engn Symbiosis, Tokyo, Japan; [Makabe, R.; Sano, M.; Moteki, M.] Natl Inst Polar Res, Tokyo, Japan; [Makabe, R.; Moteki, M.] Tokyo Univ Marine Sci & Technol, Dept Ocean Sci, Tokyo, Japan; [Makabe, R.] Grad Univ Adv Studies SOKENDAI, Dept Polar Sci, Tokyo, Japan; [Sano, M.] Univ Tokyo, Atmosphere & Ocean Res Inst, Kashiwa, Japan; [Takao, S.] Natl Inst Environm Studies, Ibaraki, Japan	Soka University; Research Organization of Information & Systems (ROIS); National Institute of Polar Research (NIPR) - Japan; Tokyo University of Marine Science & Technology; Graduate University for Advanced Studies - Japan; University of Tokyo; National Institute for Environmental Studies - Japan	Matsuda, R (通讯作者)，Soka Univ, Grad Sch Sci & Engn, Dept Environm Engn Symbiosis, Tokyo, Japan.	ryomatsuda@soka.gr.jp	Takao, Shintaro/M-8269-2019	Sano, Masayoshi/0000-0001-7264-9528; Kurosawa, Norio/0000-0001-5095-2104; Takao, Shintaro/0000-0002-0118-6447; Matsuda, Ryo/0000-0001-9312-2231	We would like to express our gratitude to the late Dr. T. Odate from the National Institute of Polar Research, who passed away in February 2021, for providing us with the opportunity to conduct our observations. We also extend our thanks to the captain and [17H06319, 17K07579, 20H04313, 23KJ2057]; Japan Society for the Promotion of Science KAKENHI [KP-308]; Research Project Funds of the National Institute of Polar Research [AP-0939]; Japanese Antarctic Research Expedition [2021-4085]; Sasakawa Scientific Research; Japan Science Society [JPMJSP2143]; Japan Science and Technology Society (Support for Pioneering Research Initiated by the Next Generation [SPRING]); Grants-in-Aid for Scientific Research [20H04313, 23KJ2057] Funding Source: KAKEN	We would like to express our gratitude to the late Dr. T. Odate from the National Institute of Polar Research, who passed away in February 2021, for providing us with the opportunity to conduct our observations. We also extend our thanks to the captain and; Japan Society for the Promotion of Science KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Research Project Funds of the National Institute of Polar Research; Japanese Antarctic Research Expedition; Sasakawa Scientific Research; Japan Science Society; Japan Science and Technology Society (Support for Pioneering Research Initiated by the Next Generation [SPRING]); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	We would like to express our gratitude to the late Dr. T. Odate from the National Institute of Polar Research, who passed away in February 2021, for providing us with the opportunity to conduct our observations. We also extend our thanks to the captain and crew of the icebreaker <ITALIC>Shirase</ITALIC> and the TV <ITALIC>Umitaka-maru</ITALIC> for their support during the cruises. Special thanks are offered to Dr. M. Yamamoto-Kawai for her valuable comments on the study results. We would also like to acknowledge A. Kagesawa, S. Okano, and J. Han for their technical assistance during the experiments. This work was supported by the Japan Society for the Promotion of Science KAKENHI (Grants 17H06319 to M. Moteki, 17K07579 and 20H04313 to R. Makabe, and 23KJ2057 to R. Matsuda), the Research Project Funds of the National Institute of Polar Research (Grant KP-308 to T. Odate), the Japanese Antarctic Research Expedition (Grant AP-0939 to M. Moteki), the Sasakawa Scientific Research (Grant 2021-4085 to R. Matsuda) from the Japan Science Society, and the Japan Science and Technology Society (Support for Pioneering Research Initiated by the Next Generation [SPRING]; Grant JPMJSP2143).	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Geophys. Res.-Biogeosci.	OCT	2023	128	10							e2023JG007705	10.1029/2023JG007705	http://dx.doi.org/10.1029/2023JG007705			16	Environmental Sciences; Geosciences, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Geology	T0NW4		hybrid			2025-03-11	WOS:001075050900001
J	Chukwuka, AV; Jerome, FC; Hassan, A; Ebonwu, B; Adeogun, AO				Chukwuka, Azubuike Victor; Jerome, Fisayo C.; Hassan, Adesola; Ebonwu, Benjamin; Adeogun, Aina O.			Redox-active metals and oxidative stress-mediated myopathies in <i>Callinectes amnicola</i>, blue crab populations from impacted sites of the Lagos Lagoon: inferences for adverse ecological outcomes	ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH			English	Article						Muscle atrophy; Reactive oxygen species	LOBSTER NEPHROPS-NORVEGICUS; SKELETAL-MUSCLE; NORWAY LOBSTER; DINOFLAGELLATE INFECTION; HISTOPATHOLOGICAL SURVEY; CARCINUS-MAENAS; PATHOLOGY; NECROSIS; DECAPOD; L.	While oxidative stress pathways are associated with a wide variety of tissue pathologies, its applications for evaluating and discerning ecological risks are limited. This study seeks to associate trends of lipid peroxidation and oxidative stress to risks of muscle pathologies in blue crabs inhabiting regions of the Lagos Lagoon. Crab samples (n = 520) were selected from pollution-impacted sites of the lagoon at Iddo, Ajah, Okobaba, Makoko, and the mid-lagoon area (control site). Antioxidant enzyme capacity, i.e., superoxide dismutase, catalase, glutathione peroxidase (GPx), and glutathione-S-transferase, and lipid peroxidation were evaluated in the muscle tissue of the blue crabs. The study findings showed distinct patterns of metal uptake in muscle, with redox-active metals (Cu and Zn) and redox-inactive metals (Pb and Cd) exhibiting site-specific differences. Additionally, there were changes in antioxidant modulation, lipid peroxidation, and the presence of associated myopathies. Blue crabs from sites (Makoko and Ajah) with greater uptake of redox-active metals (Cu and Zn) in muscle tissue showed higher trends of lipid peroxidation and the most prevalence of severe regression-type myopathies. Sites with lower uptake of redox-active metals showed the predominance of circulatory-type myopathies. This study also provides evidence of severe necrosis and myositis associated with digenean parasite cysts in crab muscle. Pathological evidence of severe skeletal muscle deterioration in the presence of greater lipid peroxidation could have implications for motor-neuron activity and reduced force-generating capacity necessary for adaptive responses in the wild. We conclude that elevated uptake of redox metals could aggravate the onset of myopathies in wild populations.	[Chukwuka, Azubuike Victor] Natl Environm Stand & Regulat Enforcement Agcy NES, Environm Qual Control Dept, Conservat Unit, Osogbo, Osun, Nigeria; [Jerome, Fisayo C.] Nigerian Inst Oceanog & Marine Res, Fisheries Resources Dept, Marine Biol Sect, Lagos, Nigeria; [Jerome, Fisayo C.; Hassan, Adesola; Adeogun, Aina O.] Univ Ibadan, Dept Zool, Ibadan, Nigeria; [Ebonwu, Benjamin] Nigerian Inst Oceanog & Marine Res, Fisheries Resources Dept, Aquaculture Sect, Lagos, Nigeria	University of Ibadan	Chukwuka, AV (通讯作者)，Natl Environm Stand & Regulat Enforcement Agcy NES, Environm Qual Control Dept, Conservat Unit, Osogbo, Osun, Nigeria.	zubbydoo@gmail.com						Achudume Albert, 2010, Journal of Water Resource and Protection, V2, P751, DOI 10.4236/jwarp.2010.28087; Adeogun AO, 2020, COMP BIOCHEM PHYS C, V229, DOI 10.1016/j.cbpc.2019.108676; AJAO EA, 1990, OIL CHEM POLLUT, V7, P85, DOI 10.1016/S0269-8579(05)80017-6; Al-Mayahi Basim, 2021, Iraqi Journal of Veterinary Sciences, V35, P245, DOI 10.33899/ijvs.2020.126748.1368; 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Sci. Pollut. Res.	OCT	2023	30	50					108565	108581		10.1007/s11356-023-29912-9	http://dx.doi.org/10.1007/s11356-023-29912-9		SEP 2023	17	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	W3QS0	37752391				2025-03-11	WOS:001074324400005
J	Rodríguez-Villegas, C; Figueroa, RI; Baldrich, AM; Pérez-Santos, I; Díaz, M; Tomasetti, SJ; Seguel, M; Alvarez, G; Salgado, P; Díaz, PA				Rodriguez-Villegas, Camilo; Figueroa, Rosa I.; Baldrich, Angela M.; Perez-Santos, Ivan; Diaz, Manuel; Tomasetti, Stephen J.; Seguel, Miriam; Alvarez, Gonzalo; Salgado, Pablo; Diaz, Patricio A.			Small and patchy is enough: An example about how toxic HAB events can spread through low resting cyst loads	HARMFUL ALGAE			English	Article						Alexandrium catenella; Strain sexual compatibility; Resting cysts; Ecoregion; Chilean Patagonia; Paralytic Shellfish Poisoning	ALEXANDRIUM-CATENELLA WHEDON; KOFOID BALECH 1985; SOUTHERN CHILE; SURFACE SEDIMENTS; DINOFLAGELLATE BLOOMS; PATAGONIA; ABUNDANCE; DINOPHYCEAE; POPULATION; SALINITY	The frequency of harmful algal blooms (HABs) has increased over the last two decades, a phenomenon enhanced by global climate change. However, the effects of climate change will not be distributed equally, and Chile has emerged as one important, vulnerable area. The Chilean Patagonian region (41-56 degrees S) hosts two marine ecor-egions that support robust blue economies via wild fisheries, aquaculture, and tourism. However, the harmful algal bloom-forming dinoflagellate Alexandrium catenella, a causative agent of paralytic shellfish poisoning outbreaks, threatens the viability of blue industries in this region and others worldwide. Despite the proliferation of A. catenella blooms over the last few decades, the role of sedimentary resting cysts in the recurrence of harmful algal blooms and the species' northward expansion across Chilean Patagonia is not well understood. As a resting cyst-producing species, the sediment-cyst dynamics of A. catenella likely contribute to the geographical expansion and bloom recurrence of this species. For this purpose, we analyzed a decade of A. catenella surface sediment cyst records across the two ecoregions of the Chilean Patagonian System that were further stratified into five sub -regions based on water temperature, salinity, dissolved oxygen, and nutrient characteristics. We also analyzed spatio-temporal cyst dynamics in a pre-, during-, and post-bloom scenario of the Chiloense ecoregion (more northern) of the Magellanic province. Our results indicated highly variable A. catenella resting cyst abundances, with a maximum of 221 cysts cm-3 recorded in 2002 after an intense bloom. Generalized linear mixed models and linear mixed models found that sampling season, subregion, and Total Organic Matter (%) explained resting cyst presence and density. The results also demonstrated the presence of A. catenella cysts in northern subregions, evidencing the northward geographical expansion observed during the last few decades. The risks of A. catenella bloom recurrence from small, patchy resting cyst distributions across broad geographical areas and under changing environmental conditions are discussed.	[Rodriguez-Villegas, Camilo] Univ Las Lagos, Programa Doctorado Ciencias, Menc Conservac & Manejo Recursos Nat, Camino Chinquihue Km 6, Puerto Montt, Chile; [Rodriguez-Villegas, Camilo; Baldrich, Angela M.; Perez-Santos, Ivan; Diaz, Patricio A.] Univ Los Lagos, Ctr i mar, Casilla 557, Puerto Montt, Chile; [Rodriguez-Villegas, Camilo; Baldrich, Angela M.; Diaz, Patricio A.] Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt, Chile; [Figueroa, Rosa I.] CSIC, Ctr Oceanog Vigo, Inst Espanol Oceanog IEO, Subida Radio Faro 50, Vigo 36390, Spain; [Perez-Santos, Ivan] Univ Concepcion, Ctr Invest Oceanog COPAS COASTAL, Concepcion, Chile; [Diaz, Manuel] Univ Austral Chile, Programa Invest Pesquera, Inst Acuicultura, Puerto Montt, Chile; [Tomasetti, Stephen J.] Univ Maryland Eastern Shore, Dept Nat Sci, Princess Anne, MD USA; [Seguel, Miriam] Univ Austral Chile, Ctr Reg Anal Recursos & Medio Ambiente CERAM, Los Pinos S-N, Balneario Pelluco, Puerto Montt, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Dept Acuicultura, Larrondo 1281, Coquimbo 1781421, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Ctr Invest & Desarrollo Tecnol Algas CIDTA, Larrondo 1281, Coquimbo, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Ctr Ecol & Sustainable Management Ocean Isl ESMOI, Dept Biol Marina, Coquimbo, Chile; [Salgado, Pablo] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Enr Abello 0552, Punta Arenas, Chile; [Perez-Santos, Ivan] Ctr Invest Ecosistemas Patagonia CIEP, Coyha, Chile	Universidad de Los Lagos; Universidad de Los Lagos; Spanish Institute of Oceanography; Consejo Superior de Investigaciones Cientificas (CSIC); Universidad de Concepcion; Universidad Austral de Chile; University System of Maryland; University of Maryland Eastern Shore; Universidad Austral de Chile; Universidad Catolica del Norte; Universidad Catolica del Norte; Universidad Catolica del Norte; Instituto de Fomento Pesquero (Valparaiso)	Rodríguez-Villegas, C (通讯作者)，Univ Las Lagos, Programa Doctorado Ciencias, Menc Conservac & Manejo Recursos Nat, Camino Chinquihue Km 6, Puerto Montt, Chile.; Rodríguez-Villegas, C (通讯作者)，Univ Los Lagos, Ctr i mar, Casilla 557, Puerto Montt, Chile.	camilo.rodriguez@ulagos.cl	Alvarez, Gonzalo/W-1262-2017; Díaz, Manuel/AAM-6225-2021; Salgado, Pablo/KMA-0636-2024; Díaz, Patricio/B-8128-2018; Perez, Ivan/B-9321-2018; Baldrich, Angela M./AAC-8054-2022; Figueroa, Rosa/M-7598-2015; Rodriguez Villegas, Camilo/AAB-8563-2022	Baldrich, Angela M./0000-0002-2624-7357; Alvarez Vergara, Gonzalo/0000-0001-5812-1559; Tomasetti, Stephen/0000-0001-6947-5141; Salgado, Pablo/0000-0002-4168-3675; Figueroa, Rosa/0000-0001-9944-7993; Rodriguez Villegas, Camilo/0000-0002-1429-2775	Comite Oceanografico Nacional (CONA) [CF-07, CF-10, CF-11, CF-12, CF-13, CF-14, CF-15, CF-16, FB210021, R20F002]; Centro de Biotecnologia y Bioingenieria (CeBiB) (PIA project, ANID, Chile) [FB0001]; COPAS COASTAL [CF-10, CF-11, BIOTOX PID2021-1256430B-C22]; CIEP; Spanish Ministry of Science and Innovation; European Community, European Regional Development Fund (ERDF);  [CF-08];  [CF-09]	Comite Oceanografico Nacional (CONA); Centro de Biotecnologia y Bioingenieria (CeBiB) (PIA project, ANID, Chile); COPAS COASTAL; CIEP(Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT)CONICYT Regional/CIEP); Spanish Ministry of Science and Innovation(Ministry of Science and Innovation, Spain (MICINN)Spanish Government); European Community, European Regional Development Fund (ERDF); ; 	This work was funded by Comite Oceanografico Nacional (CONA, CF-07 to CF-16 projects), Centro de Biotecnologia y Bioingenieria (CeBiB) (PIA project FB0001, ANID, Chile), and by COPAS COASTAL FB210021, and CIEP R20F002. Rosa I. Figueroa was funded by a national project from the Spanish Ministry of Science and Innovation and the European Community, European Regional Development Fund (ERDF; Project BIOTOX PID2021-1256430B-C22). The authors also acknowledge the AGS-61 "Cabo de Hornos" crew and their commandants of the Chilean Navy for the human and technical support of the oceanographic campaigns. The work aboard the Servicio Hidrografico y Oceanografico of the Chilean Navy (SHOA) is also recognized.	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J	Liu, YY; Hu, ZX; Gu, HF; Tao, Z; Deng, YY; Shang, LX; Chai, ZY; Tang, YZ				Liu, Yuyang; Hu, Zhangxi; Gu, Haifeng; Tao, Zhe; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong			<i>Biecheleria donggangensis sp. nov</i>. (Suessiaceae, Dinophyceae), a new marine woloszynskioid species germinated from coastal sediment of the Yellow Sea, China	PHYCOLOGIA			English	Article						Amphiesmal vesicle (AV); Dinoflagellates; Genetic distance; Nucleus-encoded rDNA; Phylogeny	ELECTRON-MICROSCOPY; RDNA SEQUENCES; LAKE TOVEL; COMB. NOV; GEN. NOV.; DINOFLAGELLATE; ULTRASTRUCTURE; PHYLOGENY; CINCTA; APPROXIMATION	A new marine woloszynskioid dinoflagellate, Biecheleria donggangensis sp. nov., germinated from the sediments of Rizhao coastal area, China, was examined by light and scanning electron microscopy. Its phylogenetic position was inferred from nuclear rDNA (partial LSU, SSU and ITS1-5.8S-ITS2) sequences. Cells were spherical to ellipsoidal (8.5-19.2 mu m long and 5.9-11.5 mu m wide) with numerous small and discoid chloroplasts, and a centrally located nucleus. Scanning electron microscopy showed an apical furrow area consisting of a single elongated apical vesicle (EAV) with 20 to 34 small globular knobs at the top of the epicone, and 13-15 latitudinal series of amphiesmal vesicles (AVs). Biecheleria donggangensis can be distinguished from other congeneric species by the configuration of the AVs bordering the EAV, the number of latitudinal AVs, and the trichocyst pore (TP) structures around the EAV. Thick-walled and spherical (or oval) cysts were 16.1-23.5 mu m in diameter and decorated with needle-like processes, each with a distal swelling. Molecular phylogenies using maximum likelihood (ML) were examined by three statistical methods (bootstrap, approximate Bayes and the Shimodaira-Hasegawa-like approximate likelihood-ratio test), which clearly demonstrated that the isolate belonged to the genus Biecheleria but formed a clade distinct from all previously described species. Genetic distance analyses justified describing the isolate as a new species rather than a new ribotype of B. cincta.	[Liu, Yuyang; Hu, Zhangxi; Tao, Zhe; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong] Laoshan Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Tao, Zhe] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Hu, Zhangxi] Guangdong Ocean Univ, Coll Fisheries, Dept Aquaculture, Zhanjiang 524088, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; Guangdong Ocean University	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Laoshan Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	Chai, Zhaoyang/F-7485-2017; Li, Yang/KFB-5350-2024; ZHANG, hui jie/HTN-1690-2023; Tao, Zhe/LIG-2380-2024; Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171	National Science Foundation of China [42106199]; Science & Technology Basic Resources Investigation Program of China [2018FY100204]; Science and Technology Innovation Project of Laoshan Laboratory [LSKJ202203700]	National Science Foundation of China(National Natural Science Foundation of China (NSFC)); Science & Technology Basic Resources Investigation Program of China; Science and Technology Innovation Project of Laoshan Laboratory	This work was financially supported by the National Science Foundation of China (No. 42106199), the Science & Technology Basic Resources Investigation Program of China (2018FY100204) and the Science and Technology Innovation Project of Laoshan Laboratory (LSKJ202203700).	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Neue Peridineen-Arten, nebst Bemerkungen uber den Bau der Hulle bei Gymno- und Glenodinium. Bulletin International de lAcademie des Sciences de Cracovie, Classe des Sciences Mathematiques et Naturelles, Serie B, V1917, P11	54	1	1	0	5	TAYLOR & FRANCIS LTD	ABINGDON	2-4 PARK SQUARE, MILTON PARK, ABINGDON OR14 4RN, OXON, ENGLAND	0031-8884	2330-2968		PHYCOLOGIA	Phycologia	SEP 3	2023	62	5					512	524		10.1080/00318884.2023.2273655	http://dx.doi.org/10.1080/00318884.2023.2273655			13	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	X5KG4					2025-03-11	WOS:001098831400008
J	Dai, WY; Han, L; Li, PF; Li, QD; Xie, LJ; Liu, CY; Kong, JR; Jia, R; Li, DY; Yang, GP				Dai, Wen-Ying; Han, Lu; Li, Pei-Feng; Li, Qin-Dao; Xie, Li-Jun; Liu, Chun-Ying; Kong, Jun-Ru; Jia, Ru; Li, Dan-Yang; Yang, Gui-Peng			The sulfate assimilation and reduction of marine microalgae and the regulation of illumination	MARINE ENVIRONMENTAL RESEARCH			English	Article						Sulfate assimilation and reduction; Light; Photon flux density; Phaeodactylum tricornutum; Amphidinium carterae	ADENOSINE 5'-PHOSPHOSULFATE SULFOTRANSFERASE; PHAEODACTYLUM-TRICORNUTUM BOHLIN; SULFUR ASSIMILATION; DIMETHYLSULFONIOPROPIONATE DMSP; OCEANIC PHYTOPLANKTON; ORGANIC SULFUR; LIGHT; TRANSPORT; GROWTH; METABOLISM	To examine the sulfate assimilation and reduction process and the regulation of illumination, diatom Phaeo-dactylum tricornutum and dinoflagellate Amphidinium carterae were selected for continuous simulation incubation under different photon flux densities (PFDs) (54, 108 and 162 & mu;mol photons m- 2 s- 1), and concentration var-iations of related sulfur compounds sulfate, dimethylsulfoniopropionate (DMSP), dimethylsulfide (DMS) and acrylic acid (AA) in the culture system were observed. The optimal PFD for the growth of two microalgae was 108 & mu;mol photons m- 2 s- 1. However, the maximum sulfate absorption occurred at 162 & mu;mol photons m- 2 s- 1 for P. tricornutum and at 54 & mu;mol photons m- 2 s- 1 for A. carterae. With the increase of PFD, the release of DMSP by P. tricornutum decreased while A. carterae increased. The largest release amount of DMS was 0.59 & PLUSMN; 0.05 fmol cells- 1 for P. tricornutum and 2.61 & PLUSMN; 0.89 fmol cells- 1 for A. carterae under their optimum growth light condition. The sulfate uptake of P. tricornutum was inhibited by the addition of amino acids, cysteine had a greater inhibitory effect than methionine, and the absorption process was controlled by light. The intermediate products of sulfur metabolism had an up-control effect on the sulfate uptake process of P. tricornutum. However, the addition of amino acids had no obvious effect on the sulfate absorption of A. carterae.	[Dai, Wen-Ying; Han, Lu; Li, Pei-Feng; Li, Qin-Dao; Xie, Li-Jun; Liu, Chun-Ying; Kong, Jun-Ru; Jia, Ru; Li, Dan-Yang; Yang, Gui-Peng] Ocean Univ China, Inst Adv Ocean Studies, Frontiers Sci Ctr Deep Ocean Multispheres & Earth, Key Lab Marine Chem Theory & Technol,Minist Educ, Qingdao 266100, Peoples R China; [Liu, Chun-Ying; Yang, Gui-Peng] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Liu, Chun-Ying] Ocean Univ China, Key Lab Marine Chem Theory & Technol, Minist Educ, 238 Songling Rd, Qingdao 266100, Peoples R China	Ocean University of China; Laoshan Laboratory; Ocean University of China	Liu, CY (通讯作者)，Ocean Univ China, Key Lab Marine Chem Theory & Technol, Minist Educ, 238 Songling Rd, Qingdao 266100, Peoples R China.	roseliu@ouc.edu.cn	Li, Peifeng/E-9421-2015; Xie, li/HGE-6052-2022; Yang, Gui-Peng/GZG-6468-2022; danyang, li/GLT-1067-2022	Liu, Chun-Ying/0000-0002-9052-2800	Natural Science Foun-dation of Shandong Province, China [ZR2021MD113]; National Key Research and Development Program of China [2016YFA0601301]	Natural Science Foun-dation of Shandong Province, China(Natural Science Foundation of Shandong Province); National Key Research and Development Program of China(National Key Research & Development Program of China)	This work was financially supported by the Natural Science Foun-dation of Shandong Province, China (ZR2021MD113) and the National Key Research and Development Program of China (No. 2016YFA0601301) .	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OCT	2023	191								106156	10.1016/j.marenvres.2023.106156	http://dx.doi.org/10.1016/j.marenvres.2023.106156		SEP 2023	10	Environmental Sciences; Marine & Freshwater Biology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Toxicology	S2TX2	37660481				2025-03-11	WOS:001069757900001
J	Meyvisch, P; Mertens, KN; Gurdebeke, PR; Sandt, C; Pospelova, V; Vrielinck, H; Borondics, F; Louwye, S				Meyvisch, Pjotr; Mertens, Kenneth Neil; Gurdebeke, Pieter Roger; Sandt, Christophe; Pospelova, Vera; Vrielinck, Henk; Borondics, Ferenc; Louwye, Stephen			Does dinocyst wall composition really reflect trophic affinity? New evidence from ATR micro-FTIR spectroscopy measurements	JOURNAL OF PHYCOLOGY			English	Article						attenuated total reflection micro-Fourier transform infrared spectroscopy; bleaching; dinosporin composition; optical photothermal infrared spectroscopy; organic-walled dinocysts; pigments; spectrochemical methods; sunscreen; synchrotron radiation; trophic affinity	AMINO-ACIDS MAAS; DINOFLAGELLATE CYSTS; ABSORBING COMPOUNDS; ULTRAVIOLET-RADIATION; CHEMICAL-COMPOSITION; MELANIN; PHYTOPLANKTON; AUTOFLUORESCENCE; PRESERVATION; PERSPECTIVE	Attenuated total reflection (ATR) microscope Fourier transform infrared (micro-FTIR) spectroscopy was used to investigate the dinosporin composition in the walls of modern, organic-walled dinoflagellate resting cysts (dinocysts). Variable cyst wall compositions were observed, which led to the erection of four spectrochemical groups, some with striking similarities to other resistant biomacromolecules such as sporopollenin and algaenan. Furthermore, possible proxies derivable from the spectrochemical composition of modern and fossil dinocysts were discussed. The color of the dinocyst walls was reflected in the spectral data. When comparing that color with a standard and the results of a series of bleaching experiments with oxidative agents, eumelanin was assigned as a likely pigment contributing to the observed color. Following this assignment, the role of eumelanin as an ultraviolet sunscreen in colored dinocysts was hypothesized, and its implications on the autofluorescence and morphological preservation of dinocysts were further discussed. Unlike what had previously been assumed, it was shown that micro-FTIR data from dinocysts cannot be used to unambiguously infer trophic affinities of their associated cells. Finally, using methods with high spatial resolutions (synchrotron transmission micro-FTIR and optical photothermal infrared spectroscopy), it was shown that dinocyst wall layers are chemically homogenous at the probed scales. This study fills a large knowledge gap in our understanding of the chemical nature of dinocyst walls and has nuanced certain assumptions and interpretations made in the past.	[Meyvisch, Pjotr; Gurdebeke, Pieter Roger; Louwye, Stephen] Univ Ghent, Dept Geol, Campus Sterre,Bldg S8,Krijgslaan 281, Ghent, Belgium; [Mertens, Kenneth Neil] Ifremer, LITTORAL, Paris, France; [Sandt, Christophe; Borondics, Ferenc] SOLEIL Synchrotron, SMIS Beamline, Paris, France; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, Minneapolis, MN USA; [Vrielinck, Henk] Univ Ghent, Dept Solid State Sci, Ghent, Belgium	Ghent University; Ifremer; University of Minnesota System; University of Minnesota Twin Cities; Ghent University	Meyvisch, P (通讯作者)，Univ Ghent, Dept Geol, Campus Sterre,Bldg S8,Krijgslaan 281, Ghent, Belgium.	pjotr.meyvisch@ugent.be	Louwye, Stephen/D-3856-2012; Gurdebeke, Pieter/AAY-7059-2020; Vrielinck, Henk/M-8367-2016; Meyvisch, Pjotr/ABB-1527-2021; Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015; Sandt, Christophe/M-9806-2014	Mertens, Kenneth/0000-0003-2005-9483; Vrielinck, Henk/0000-0003-4861-9630; Sandt, Christophe/0000-0002-6432-2004; Gurdebeke, Pieter R./0000-0003-1425-8515; 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Phycol.	OCT	2023	59	5					1064	1084		10.1111/jpy.13382	http://dx.doi.org/10.1111/jpy.13382		AUG 2023	21	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	X1LK7	37623312	Green Published			2025-03-11	WOS:001082624100001
J	Wang, CY; Zheng, P; Gu, HF; Luo, ZH; Luo, ZH; Mao, LJ; Zhang, YZ				Wang, Changyou; Zheng, Ping; Gu, Haifeng; Luo, Zhaohe; Luo, Zhuhua; Mao, Longjiang; Zhang, Yuanzhi			Predicting Ecological Distribution of the Toxic Dinoflagellate <i>Alexandrium minutum</i> in China Sea Using Ecological Niche Modeling	JOURNAL OF OCEAN UNIVERSITY OF CHINA			English	Article						Alexandrium minutum; MaxEnt, habitat suitability; environmental variable; potential distributions	EAST-COAST; DINOPHYCEAE; BLOOMS; SEDIMENTS; MAXENT; GROWTH; CYSTS	Alexandrium minutum from the China Sea produces a range of toxins and causes damage to the local ecosystems and aquaculture. This is essential to understand environmental factors affecting potential distribution. Potential distributions of A. minutum in the China Sea were predicted based on maximum entropy modeling, and dominant environmental variables were studied through analyses of variable contributions and response curves. The results showed that highly suitable areas were mainly located in the southwest of the Yellow Sea, the Laizhou Bay, and north of Haizhou Bay. The coast of the South China Sea was predicted as a low-suitability area, and the coast of the East China Sea as an unsuitable area. Mean temperature of the coldest month (T_min) had the largest drop in permutation importance but a low percent contribution. The probability of presence of A. minutum increased with increasing concentration of nitrate (NO3-) and annual mean temperature (T_ann) over a wide range of them. The response curves decreased with increasing concentration of phosphate (PO43-) and ratio of NO3- to PO43- (N_P_ratio) when PO43- is above 0.049 mu mol L-1 and N_P_ratio above 4, indicating that low values of PO43- concentration and N_P_ratio favour the occurrence of A. minutum. As a predictor, the variance of annual temperature (T_Var) had the highest percent contribution and gains. PO43- was predicted to have much more information than the other variables, and exhibited the second largest drop in permutation importance and percent contribution. The T_Var and PO43- are the most important dominant predictor variables.	[Wang, Changyou; Zheng, Ping; Gu, Haifeng; Luo, Zhaohe; Luo, Zhuhua; Mao, Longjiang; Zhang, Yuanzhi] Nanjing Univ Informat Sci & Technol, Sch Marine Sci, Nanjing 210044, Peoples R China; [Gu, Haifeng; Luo, Zhuhua] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Luo, Zhuhua] Minist Nat Resources, Inst Oceanog 3, Key Lab Marine Biogenet Resources, Xiamen 361005, Peoples R China	Nanjing University of Information Science & Technology; Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources	Wang, CY (通讯作者)，Nanjing Univ Informat Sci & Technol, Sch Marine Sci, Nanjing 210044, Peoples R China.	chywang@nuist.edu.cn	Luo, Zhaohe/ITT-7163-2023; luo, zhuhua/ADX-8382-2022; Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171	This work was supported by the National Key Research and the Development Program of China (No. 2019YFE 0124700), the China National Key Research and Development Program (No. 2022YFC3106002), the National Natural Science Foundation of China (No. U1901215), [2019YFE 0124700]; National Key Research and the Development Program of China [2022YFC3106002]; China National Key Research and Development Program [U1901215]; National Natural Science Foundation of China [2020r028]; Startup Foundation for Introducing Talent of NUIST	This work was supported by the National Key Research and the Development Program of China (No. 2019YFE 0124700), the China National Key Research and Development Program (No. 2022YFC3106002), the National Natural Science Foundation of China (No. U1901215),(National Key Research & Development Program of China); National Key Research and the Development Program of China(National Key Research & Development Program of China); China National Key Research and Development Program(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Startup Foundation for Introducing Talent of NUIST	This work was supported by the National Key Research and the Development Program of China (No. 2019YFE 0124700), the China National Key Research and Development Program (No. 2022YFC3106002), the National Natural Science Foundation of China (No. U1901215), and the Startup Foundation for Introducing Talent of NUIST (No. 2020r028).	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OCEAN UNIV.	AUG	2023	22	4					1119	1128		10.1007/s11802-023-5422-y	http://dx.doi.org/10.1007/s11802-023-5422-y			10	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	U5MY1					2025-03-11	WOS:001085255300026
J	Semin, S; Tas, S; Dursun, F				Semin, Sebahat; Tas, Seyfettin; Dursun, Fuat			Spatial-temporal variability of phytoplankton community and potentially harmful species in the Golden Horn Estuary (Sea of Marmara, Turkiye)	JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM			English	Article						estuary; Golden Horn; HABs; oceanography; phytoplankton; toxic species	SKELETONEMA-COSTATUM; EUTROPHIC ESTUARY; CYST FORMATION; RED TIDE; RIVER; DINOPHYCEAE; DIVERSITY; SALINITY; BLOOMS; SEASONALITY	Spatial-temporal variability of phytoplankton community and potentially harmful species in the Golden Horn Estuary (Sea of Marmara) was investigated from October 2018 to September 2019 together with some environmental factors. A total of 148 phytoplankton taxa were identified during the study period. Among these, 134 taxa (90.5%) consisted of diatoms (71 taxa, 48%) and dinoflagellates (63 taxa, 42.5%), while 14 taxa (9.5%) were other groups. Seventeen species were recorded for the first time in the study area. Species richness was highest in October, while it was lowest in August. The species diversity (H') varied according to sampling stations. Cell abundances were higher especially in the middle and upper estuary in spring and summer than in autumn and winter. The abundance of diatoms and euglenophyceans was highest in spring, while the abundance of raphidophycean and cryptophycean was highest in summer. Temperature was correlated positively with total abundance (P < 0.01), but negatively with species diversity (H') (P < 0.01). Several dense algal blooms causing discolouration in surface water occurred in spring and summer. A total of 12 microalgae species known as potentially toxic were detected during this study period. Among these, dinoflagellates Alexandrium cf. tamarense and Dinophysis infundibulum were recorded for the first time in the study area. The increase in species diversity and richness in the upper estuary, and the decrease in frequency of bloom events compared with the previous years indicated the changes in environmental conditions in this study period. Findings showed that phytoplankton might be used as an indicator of the changing environmental conditions in such ecosystems.	[Semin, Sebahat; Tas, Seyfettin; Dursun, Fuat] Istanbul Univ, Inst Marine Sci & Management, TR-34134 Istanbul, Turkiye	Istanbul University	Semin, S (通讯作者)，Istanbul Univ, Inst Marine Sci & Management, TR-34134 Istanbul, Turkiye.	sebahat_semin@hotmail.com	Tas, Seyfettin/AAC-5594-2020; Dursun, Fuat/AAD-4351-2022	, Seyfettin/0000-0002-4660-3937				Ahel M, 1996, MAR ECOL PROG SER, V143, P289, DOI 10.3354/meps143289; Albayrak S, 2010, MEDITERR MAR SCI, V11, P295, DOI 10.12681/mms.78; AlgaeBase, US; Altenburger A, 2020, SCI ADV, V6, DOI 10.1126/sciadv.abb1611; Balzano S, 2011, J PLANKTON RES, V33, P937, DOI 10.1093/plankt/fbq150; Barbosa AB, 2010, ESTUAR COAST, V33, P324, DOI 10.1007/s12237-009-9200-x; BARLOW RG, 1993, DEEP-SEA RES PT II, V40, P459, DOI 10.1016/0967-0645(93)90027-K; Buric Z, 2007, MAR ECOL-EVOL PERSP, V28, P169, DOI 10.1111/j.1439-0485.2007.00180.x; Cerino F, 2006, EUR J PHYCOL, V41, P363, DOI 10.1080/09670260600839450; Cetinic I, 2006, HYDROBIOLOGIA, V555, P31, DOI 10.1007/s10750-005-1103-7; Clarke K.R., 2001, PRIMER V5 USER MANUA; CLOERN JE, 1987, CONT SHELF RES, V7, P1367, DOI 10.1016/0278-4343(87)90042-2; Cupp Easter E., 1943, BULL SCRIPPS INST OCEANOGR, V5, P1; Drebes G., 1974, MARINES PHYTOPLANKTO; Dursun F, 2021, J MAR BIOL ASSOC UK, V101, P649, DOI 10.1017/S0025315421000631; Dursun F, 2019, J MAR BIOL ASSOC UK, V99, P279, DOI 10.1017/S0025315418000073; Dursun F, 2017, TURK J FISH AQUAT SC, V17, P653, DOI 10.4194/1303-2712-v17_4_01; Dursun Fuat, 2016, Su Urunleri Dergisi, V33, P201, DOI 10.12714/egejfas.2016.33.3.03; Guiry M.D., 2020, AlgaeBase; Hevia-Orube J, 2016, DIATOM RES, V31, P185, DOI 10.1080/0269249X.2016.1228548; Hoppenrath M., 2009, MARINE PHYTOPLANKTON; Irvali N, 2009, GEO-MAR LETT, V29, P151, DOI 10.1007/s00367-008-0129-z; Jasprica N, 2012, NOVA HEDWIGIA, P405; KALELI A, 2021, AQUAT RES, V4, P88, DOI DOI 10.3153/AR21008; Koyuncu A., 2018, 3 MARM SEA S NOV 201, P155; Lassus P., 2016, Toxic and harmful microalgae of the world ocean; Legrand C, 1998, AQUAT MICROB ECOL, V15, P65, DOI 10.3354/ame015065; Lionard M, 2005, HYDROBIOLOGIA, V540, P105, DOI 10.1007/s10750-004-7123-x; Liu DY, 2005, MAR POLLUT BULL, V50, P91, DOI 10.1016/j.marpolbul.2004.11.016; Lundholm N., 2009, IOC UNESCO TAXONOMIC; Mallin MA, 1999, ESTUARIES, V22, P825, DOI 10.2307/1353064; MANTOURA RFC, 1983, ANAL CHIM ACTA, V151, P297, DOI 10.1016/S0003-2670(00)80092-6; marinespecies, WORMS; McLusky DS., 2004, ESTUARINE ECOSYSTEM; Okus E., 2001, GOLD HORN 2001 S IST, P145; Olli K, 2004, MAR BIOL, V145, P1, DOI 10.1007/s00227-004-1295-9; Olli K, 1996, J PLANKTON RES, V18, P1587, DOI 10.1093/plankt/18.9.1587; Paerl HW, 2007, ECOL APPL, V17, pS88, DOI 10.1890/05-0840.1; Rensel J.E., 2007, Fish kills from the harmful alga Heterosigma akashiwo in Puget Sound: Recent blooms and review; Rensel JEJ, 2010, HARMFUL ALGAE, V10, P98, DOI 10.1016/j.hal.2010.07.005; Sarno D, 2005, J PHYCOL, V41, P151, DOI 10.1111/j.1529-8817.2005.04067.x; Steidinger Karen A., 1997, P387, DOI 10.1016/B978-012693018-4/50005-7; Sur HI, 2002, WATER SCI TECHNOL, V46, P29, DOI 10.2166/wst.2002.0138; Tas S, 2015, MEDITERR MAR SCI, V16, P621, DOI 10.12681/mms.1049; Tas S, 2015, MEDITERR MAR SCI, V16, P432, DOI 10.12681/mms.1042; Tas S., 2003, TURK J MAR SCI, V9, P163; Tas S, 2006, ESTUAR COAST SHELF S, V68, P593, DOI 10.1016/j.ecss.2006.02.025; Tas S, 2020, J MAR BIOL ASSOC UK, V100, P1053, DOI 10.1017/S0025315420001058; Tas S, 2019, BOT MAR, V62, P537, DOI 10.1515/bot-2019-0035; Tas S, 2016, TURK MAR RES FND PUB, V42, P768; Tas S, 2017, FUND APPL LIMNOL, V189, P153, DOI 10.1127/fal/2016/0957; Tas S, 2017, J MAR BIOL ASSOC UK, V97, P1483, DOI [10.1017/s0025315416000837, 10.1017/S0025315416000837]; Tas S, 2011, TURK J FISH AQUAT SC, V11, P673, DOI 10.4194/1303-2712-v11_4_03; Tas S, 2009, ESTUAR COAST, V32, P1205, DOI 10.1007/s12237-009-9207-3; Throndsen J., 1978, Preservation and storage, P69, DOI DOI 10.1111/J.0022-3646.1975.00142.X; Utermu┬hl H., 1958, MITT INT VER LIMNOL, V9, P1, DOI DOI 10.1080/05384680.1958.11904091; Uysal Zahit, 1996, Turkish Journal of Botany, V20, P519; Wang ZH, 2007, J PLANKTON RES, V29, P209, DOI 10.1093/plankt/fbm008	58	3	3	3	11	CAMBRIDGE UNIV PRESS	CAMBRIDGE	EDINBURGH BLDG, SHAFTESBURY RD, CB2 8RU CAMBRIDGE, ENGLAND	0025-3154	1469-7769		J MAR BIOL ASSOC UK	J. Mar. Biol. Assoc. U.K.	JUL 24	2023	103								e56	10.1017/S0025315423000449	http://dx.doi.org/10.1017/S0025315423000449			14	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	M7IQ9					2025-03-11	WOS:001031920200001
J	Steinsland, K; Grant, DM; Ninnemann, US; Fahl, K; Stein, R; De Schepper, S				Steinsland, Kristine; Grant, Danielle M.; Ninnemann, Ulysses S.; Fahl, Kirsten; Stein, Ruediger; De Schepper, Stijn			Sea ice variability in the North Atlantic subpolar gyre throughout the Last Interglacial	QUATERNARY SCIENCE REVIEWS			English	Article						Sea ice; Labrador sea; Eirik drift; Ocean circulation; Dinoflagellate cysts; Biomarkers; IP25; MIS 5e	DINOFLAGELLATE CYST ASSEMBLAGES; ARCTIC-OCEAN; SOUTHERN GREENLAND; SURFACE CONDITIONS; GLACIAL INCEPTION; DEEP-WATER; BAFFIN-ISLAND; NORWEGIAN SEA; LABRADOR SEA; FRAM STRAIT	The Last Interglacial period, Marine Isotope Stage 5e (MIS 5e similar to 116-128 ka), is thought to have had a warmer, but less stable climate than the present interglacial. One key factor that has the potential to influence the ocean and climate is sea ice, but its presence and extent throughout MIS 5e is poorly constrained. Here we reconstruct the sea surface hydrography and sea ice variability in the Labrador Sea, a region influenced by the subpolar gyre (SPG) and where deep water formation occurs, in order to evaluate the potential of sea ice to drive or amplify ocean variability. We analysed biomarkers (highly branched isoprenoids, HBIs, and sterols), dinoflagellate cyst assemblages and stable oxygen isotopes from the late stages of MIS 6, throughout MIS 5e, into MIS 5d. Our results show that the late glacial MIS 6 was likely characterised by a thick multiyear sea ice cover. During the first phase of MIS 5e, the hydrography was highly variable. The initial 1500 years (128-126.5 ka) were characterised by the presence of a seasonal Marginal Ice Zone (MIZ) accompanied by subsurface warmth. As the sea ice retreated, cool, likely polar-sourced water dominated the surface and subsurface ocean (126.5-124 ka), until an abrupt surge of sea ice marked the final pulse of the remnants of the deglaciation. The second half of MIS 5e (124-116 ka) was characterised by a persistent inflow of warm water, only interrupted by incursions of cold water as summer insolation declined. Seasonal sea ice returned to the Eirik Drift during MIS 5d. We infer that sea ice variability throughout MIS 5e was coupled with the variability of the SPG. Especially the location of a proximal MIZ to the Labrador Sea convection region could have been important for SPG dynamics. In addition, the presence of sea ice at the transitions into and out of MIS 5e could point to its important role in modulating and enhancing the magnitude and coherence of climate signals at major climatic transitions. (c) 2023 Published by Elsevier Ltd.	[Steinsland, Kristine; Grant, Danielle M.; De Schepper, Stijn] NORCE Norwegian Res Ctr, NORCE Climate & Environm, Bergen, Norway; [Steinsland, Kristine; Grant, Danielle M.; De Schepper, Stijn] Bjerknes Ctr Climate Res, Bergen, Norway; [Ninnemann, Ulysses S.] Univ Bergen, Dept Earth Sci, Bergen, Norway; [Ninnemann, Ulysses S.] Bjerknes Ctr Climate Res, Bergen, Norway; [Fahl, Kirsten; Stein, Ruediger] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Bremerhaven, Germany; [Stein, Ruediger] Univ Bremen, Fac Geosci, Bremen, Germany; [Stein, Ruediger] Ctr Marine Environm Sci, Bremen, Germany; [Stein, Ruediger] Ocean Univ China, Frontiers Sci Ctr Deep Ocean Multispheres & Earth, Qingdao, Peoples R China; [Stein, Ruediger] Key Lab Marine Chem Theory & Technol, Qingdao, Peoples R China	Norwegian Research Centre (NORCE); Bjerknes Centre for Climate Research; University of Bergen; Bjerknes Centre for Climate Research; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; University of Bremen; Ocean University of China	Steinsland, K (通讯作者)，NORCE Norwegian Res Ctr, NORCE Climate & Environm, Bergen, Norway.; Steinsland, K (通讯作者)，Bjerknes Ctr Climate Res, Bergen, Norway.	stei@norceresearch.no	Grant, Danielle/AAI-6908-2020; De Schepper, Stijn/A-2836-2011	Grant, Danielle Magann/0000-0003-4062-6481; Steinsland, Kristine/0000-0002-1276-0109	European Research Council (ERC) under the European Union; European Research Council under the European Union;  [818449];  [610055]	European Research Council (ERC) under the European Union(European Research Council (ERC)); European Research Council under the European Union(European Research Council (ERC)); ; 	This study is part of the AGENSI project, which is funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement n degrees 818449) . We like to thank the researchers and crew on board RV G.O. Sars during the 2016 cruise of the Ice2Ice project, which was funded by the European Research Council under the European Union's Seventh Framework Programme (FP7/2007-2013, ERC grant agreement n degrees 610055) . We thank Walter Luttmer in the biomarker laboratory, Dag Inge Blindheim for technical support and Malcolm Jones at Palynological Laboratory Service Ltd.	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Sci. Rev.	AUG 1	2023	313								108198	10.1016/j.quascirev.2023.108198	http://dx.doi.org/10.1016/j.quascirev.2023.108198		JUL 2023	17	Geography, Physical; Geosciences, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Physical Geography; Geology	N8RE4		Green Published, hybrid			2025-03-11	WOS:001039612800001
J	Selina, MS; Efimova, KV; Morozova, TV; Hoppenrath, M				Selina, Marina S.; Efimova, Kseniya V.; Morozova, Tatiana V.; Hoppenrath, Mona			Morpho-molecular description of the new sand-dwelling dinoflagellate genus Aliferia gen. nov. (Dinophyceae) from the Sea of Japan, including two new species	PHYCOLOGIA			English	Article						Amphidiniopsis; Benthic; Diplopsalidoideae; Molecular phylogeny; Morphology; Peridiniales; Taxonomy	MULTIPLE SEQUENCE ALIGNMENT; CYST-THECA RELATIONSHIP; MARINE DINOFLAGELLATE; SP. NOV.; BENTHIC DINOFLAGELLATE; ELECTRON-MICROSCOPY; EMENDED DESCRIPTION; DIPLOPSALIS GROUP; COASTAL WATERS; COMB. NOV.	Two new marine sand-dwelling dinoflagellate species from subtidal sand collected in Peter the Great Bay, Sea of Japan, were described by morphological and molecular methods. Both species were slightly flattened dorsoventrally or laterally, roughly oval in shape, with small epitheca and large hypotheca, with ascending cingulum, and sulcus covered by a wide list of the first postcingular plate. The species differed in the thecal ornamentation, the number of epithecal plates, the shape of the left sulcal list and the shape of the fifth postcingular plate. Phylogenetic reconstructions based on LSU rDNA sequences of the two new species and their morphological characters confirmed their monophyly and justified the establishment of a new genus, Aliferia gen. nov., with Al. nikselinii sp. nov. and Al. kharlamenkoi sp. nov. The new genus was characterized by dorsoventrally or laterally flattened cells with small epitheca and large hypotheca, ascending cingulum, shifted or not shifted sulcus covered by a wide list on the left side, and with one or two ventral spines. Thecal tabulation: APC 3 ' 2a 6-7 '' 2 ? or 3c 5s 5 ''' 1 ''''. Distance-based analyses indicated Diplopsalidoideae as the closest phylogroup to Aliferia. Seven phylogroups of the Amphidiniopsis complex, Herdmania, the Protoperidinium complex, and Archaeperidinium (Clade ' Y ') were grouped with the highest support values, and Aliferia formed an independent branch basal to members of Clade ' Y '. The genus Aliferia showed morphological similarity to both sand-dwelling (Amphidiniopsis and Herdmania) and planktonic (Diplopsalidoideae) species. The morphology and phylogeny of Aliferia suggested complex taxonomic relationships between the planktonic and benthic genera.	[Selina, Marina S.; Efimova, Kseniya V.; Morozova, Tatiana V.] Russian Acad Sci, AV Zhirmunsky Natl Sci Ctr Marine Biol, Far Eastern Branch, Ul Palchevskogo 17, Vladivostok 690041, Russia; [Hoppenrath, Mona] German Ctr Marine Biodivers Res DZMB, Senckenberg Meer, Sudstrand 44, D-26382 Wilhelmshaven, Germany	Russian Academy of Sciences; National Scientific Center of Marine Biology, Far East Branch of the Russian Academy of Sciences; Leibniz Association; Senckenberg Gesellschaft fur Naturforschung (SGN)	Selina, MS (通讯作者)，Russian Acad Sci, AV Zhirmunsky Natl Sci Ctr Marine Biol, Far Eastern Branch, Ul Palchevskogo 17, Vladivostok 690041, Russia.	marinaselina2012@yandex.ru	Efimova, Kseniya/AAJ-2040-2020; Selina, Marina/AAM-6847-2021; Morozova, Tatiana/G-4468-2018		Electron microscopic examinations were carried out at the Far Eastern Center of Electron Microscopy, A.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences. The authors are sincerely grateful to the st; Far Eastern Center of Electron Microscopy, A.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences	Electron microscopic examinations were carried out at the Far Eastern Center of Electron Microscopy, A.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences. The authors are sincerely grateful to the st; Far Eastern Center of Electron Microscopy, A.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences	Electron microscopic examinations were carried out at the Far Eastern Center of Electron Microscopy, A.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences. The authors are sincerely grateful to the staff of the Center for their assistance with electron microscopy. 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J	Wang, Q; Chen, XR; Lin, L; Yao, W; Wu, HX				Wang, Qiong; Chen, Xiaorong; Lin, Ling; Yao, Wei; Wu, Huixian			The dispersal of dinoflagellate cyst caused by international ships under repair conditions: a potential invasion risk to the Yangtze River Estuary, China	ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH			English	Article						Ballast water tank sediments; Harmful; toxic species; Shipyard	BALLAST TANK SEDIMENTS; SURFACE SEDIMENTS; RESTING CYSTS; BAY; ASSEMBLAGES; COAST; WATER; GERMINATION; TRANSPORT; IMPACT	The foreign dinoflagellate cysts in ships' ballast water tank sediments (BWTS) can be viable for a long time under hostile storage conditions. It is crucial to understand the detailed mechanisms of harmful biological invasions in estuary ecosystems. To study the relationship between the abundance of dinoflagellate cysts and environmental factors, cyst assemblages were analyzed in 7 sediment samples, collected from one international commercial ship that arrived in Shanghai in August 2020. Twenty-three dinoflagellate cyst taxa were identified in 5 groups, including autotrophic (9) and heterotrophic (14) species. Distribution of dinoflagellate cysts in the different ballast water tanks is heterogeneous. Dinoflagellate cysts in BWTS of the repaired ship were dominated by Scrippsiella acuminata, Protoperidinium leonis, Protoperidinium oblongum, Lingulodinium polyedra, Alexandrium tamarense/A. catenella, Protoperidinium pentagonum, and Protoperidinium subinerme. The abundance of the dinoflagellate cysts in each tank ranged from 80.69 to 330.85 cysts g(-1) DS (dry sediment). Multivariate statistical analyses revealed that the variation in cysts from different tanks had positive correlations with total nitrogen (TN), total phosphorus (TP), and pH and negative correlations with total organic carbon (TOC) except for sample TK5. For germination of dinoflagellate cysts in BWTS, 12 species were germinated in 40 days and cysts of potentially toxic dinoflagellate species were more abundant than those of non-toxic species. Results show that potentially viable and harmful/toxic dinoflagellate cysts are present in BWTS of ships arriving in Shanghai, China. Consequently, knowledge obtained in this study can be valuable for further managing of potential biological invasion of the Yangtze River Estuary.	[Wang, Qiong; Chen, Xiaorong; Lin, Ling; Wu, Huixian] Shanghai Ocean Univ, Coll Marine Ecol & Environm, Shanghai 201306, Peoples R China; [Wang, Qiong; Lin, Ling; Wu, Huixian] Shanghai Ocean Univ, Ballast Water Detecting Lab, Shanghai 201306, Peoples R China; [Wang, Qiong; Wu, Huixian] Natl Engn Res Ctr Special Equipment & Power Syst S, Shanghai 200031, Peoples R China; [Yao, Wei] Shanghai COSCO Shipping Heavy Ind Co Ltd, Shanghai 201913, Peoples R China	Shanghai Ocean University; Shanghai Ocean University	Wu, HX (通讯作者)，Shanghai Ocean Univ, Coll Marine Ecol & Environm, Shanghai 201306, Peoples R China.; Wu, HX (通讯作者)，Shanghai Ocean Univ, Ballast Water Detecting Lab, Shanghai 201306, Peoples R China.; Wu, HX (通讯作者)，Natl Engn Res Ctr Special Equipment & Power Syst S, Shanghai 200031, Peoples R China.	hxwu@shou.edu.cn	Wu, Huixian/N-6353-2014		National Key Research and Development Program of China [2022YFC2302800]	National Key Research and Development Program of China(National Key Research & Development Program of China)	We thank the anonymous reviewers for their constructive comments. 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Sci. Pollut. Res.	AUG	2023	30	36					86178	86188		10.1007/s11356-023-28485-x	http://dx.doi.org/10.1007/s11356-023-28485-x		JUL 2023	11	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	N9OS6	37402915				2025-03-11	WOS:001025092900006
J	Rojas-Castillo, OA; Pereira, L; Buffon, P; Cardoso, LD				Rojas-Castillo, Oscar Alberto; Pereira, Leonel; Buffon, Patricia; Cardoso, Luciana de Souza			Drivers and ecology of Ceratium furcoides invasion of a Brazilian subtropical reservoir and its interaction with the phytoplankton community	LIMNOLOGICA			English	Article						Phytoplankton dynamics; Dinophyceae; Dinoflagellate; Artificial lake; Freshwater; Invasion	LEVANDER LANGHANS 1925; DINOFLAGELLATE CERATIUM; 1ST RECORD; LAKE; HIRUNDINELLA; BLOOM; DAM; BACILLARIOPHYCEAE; ASSOCIATIONS; SUCCESSION	We analyzed the phytoplankton interactions during a Ceratium furcoides invasion along with the environmental variables contributing to its dominance and blooms in Marrecas, a south-Brazilian reservoir. We monitored Marrecas weekly/monthly (n = 116) from 2014 to 2018. C. furcoides avoided summer and preferred spring, which displayed optimal temperatures for the species (15-23 degrees C), exhibiting in October 2014 the maximum density ever reported (15,865 ind. mL-1). It showed direct correlation with iron, manganese, and turbidity; evidencing dependency of a mixing regime which triggers cyst resuspension (interrupting cysts' dormancy). Cryptomonas spp., Komma caudata, Discostella stelligera and after 2016 also Chlamydomonas sp. were the only species present during C. furcoides blooms. Komma caudata, Cryptomonas sp., and Aulacoseira alpigena correlated positively with the invader, as all prefer turbulent waters. C. furcoides correlated negatively with Chlorophyta (mainly Chlamydomonas spp.) which is vulnerable to mixing, and Bacillariophyta (Urosolenia eriensis and Discostella stelligera) that prefers clear waters. It also showed a consistent negative correlation with Ochrophyta (Mallomonas spp.), Cyanobacteria (Microcystis), and Urosolenia eriensis; suggesting competition for resources. Furthermore, it correlated negatively with species richness. Notwithstanding, based on the decrease of blooms, the phytoplankton community appears to have reached a more stable state (homogeneous species representation). However, further monitoring is required for confirmation.	[Rojas-Castillo, Oscar Alberto; Pereira, Leonel] Univ Coimbra, MARE Marine & Environm Sci Ctr, Associate Lab ARNET, Dept Life Sci, P-3001456 Coimbra, Portugal; [Buffon, Patricia] Serv Autonomo Municipal Agua & Esgoto Samae, BR-95020170 Caxias Do Sul, RS, Brazil; [Cardoso, Luciana de Souza] Univ Fed Rio Grande do Sul, BR-91501970 Porto Alegre, RS, Brazil; [Rojas-Castillo, Oscar Alberto] Univ Copenhagen, Dept Biol, Freshwater Biol Sect, Univ Pk 4 3rd Floor, DK-2100 Copenhagen, Denmark	Universidade de Coimbra; Universidade Federal do Rio Grande do Sul; University of Copenhagen	Rojas-Castillo, OA (通讯作者)，Univ Coimbra, MARE Marine & Environm Sci Ctr, Associate Lab ARNET, Dept Life Sci, P-3001456 Coimbra, Portugal.	oscar.rojas.gua27@gmail.com	de S Cardoso, Luciana/D-9523-2013; Pereira, Leonel/M-3527-2013	Pereira, Leonel/0000-0002-6819-0619; Rojas Castillo, Oscar Alberto/0000-0002-0176-9685	Coordenagao de Aperfei-goamento de Pessoal de Nfvel Superior-Brasil [001]; Coordenagao de Aperfei-goamento de Pessoal de Nfvel Superior-Brasil (CAPES) [001]; European Commission through the program Erasmus Mundus Master Course-International Master in Applied Ecology (EMMC-IMAE) [FPA 2023-0224/532524-1-FR-2012-1-ERA MUNDUS-EMMC]; national funds through Fundagao para a Ciencia e Tecnologia (FCT) [LA/P/0069/2020]	Coordenagao de Aperfei-goamento de Pessoal de Nfvel Superior-Brasil(Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES)); Coordenagao de Aperfei-goamento de Pessoal de Nfvel Superior-Brasil (CAPES)(Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES)); European Commission through the program Erasmus Mundus Master Course-International Master in Applied Ecology (EMMC-IMAE); national funds through Fundagao para a Ciencia e Tecnologia (FCT)	This work was supported partially by the Coordenagao de Aperfeigoamento de Pessoal de Nfvel Superior-Brasil (CAPES) -Finance Code 001, by the European Commission through the program Erasmus Mundus Master Course-International Master in Applied Ecology (EMMC-IMAE) (FPA 2023-0224/532524-1-FR-2012-1-ERA MUNDUS-EMMC), and by national funds through Fundagao para a Ciencia e Tecnologia (FCT) , under the project LA/P/0069/2020 granted to the Associate Laboratory ARNET.	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J	Shin, HH; Son, MH; Park, BS; Han, KH; Youn, JY; Kwak, KY; Lee, JH; Shin, AY; Byun, E; Yoo, YD; Seo, MH; Shin, K; Li, Z				Shin, Hyeon Ho; Son, Moon Ho; Park, Bum Soo; Han, Kyung Ha; Youn, Joo Yeon; Kwak, Kyeong Yoon; Lee, Ji Hoon; Shin, A. -Young; Byun, Eunjung; Yoo, Yeong Du; Seo, Min Ho; Shin, Kyungsoon; Li, Zhun			Bloom development of toxic dinoflagellate<i> Alexandrium</i><i> catenella</i> (Group I) in Jinhae-Masan Bay, Korea: Germination strategy of resting cysts in relation to temperature and salinity	MARINE POLLUTION BULLETIN			English	Article						PSP; Ellipsoidal cyst; Seed population; Dormancy period; Adaptation	SPECIES COMPLEX DINOPHYCEAE; TAMARENSE DINOPHYCEAE; EXCYSTMENT; FUNDYENSE; MINUTUM; SEA	To better understand the role of resting cysts in the outbreak of paralytic shellfish poisoning and bloom dynamics in Jinhae-Masan Bay, Korea, this study investigated the germination features of ellipsoidal Alexandrium cysts isolated from sediments collected in winter and summer under different combinations of temperature and salinity. Morphology and phylogeny of germling cells revealed that the ellipsoidal Alexandrium cysts belong to Alexandrium catenella (Group I). The cysts could germinate across a wide range of temperature (5-25 degrees C) with germination success within 5 days, indicating that continuous seeding for the maintenance of vegetative cells in the water column may occur through the year without an endogenous clock to regulate germination timing. In addition, the cyst germination of A. catenella (Group I) was not controlled by seasonal salinity changes. Based on the results, this study provides a schematic scenario of the bloom development of A. catenella (Group I) in Jinhae-Masan Bay, Korea.	[Shin, Hyeon Ho; Han, Kyung Ha; Youn, Joo Yeon; Kwak, Kyeong Yoon] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Son, Moon Ho] Natl Inst Fisheries Sci, Busan 619705, South Korea; [Park, Bum Soo; Han, Kyung Ha] Hanyang Univ, Dept Life Sci, 222 Wangsipriro, Seoul 04763, South Korea; [Lee, Ji Hoon; Shin, A. -Young; Byun, Eunjung] Korea Inst Ocean Sci & Technol, Marine Biotechnol Res Ctr, Busan 49111, South Korea; [Yoo, Yeong Du] Kunsan Natl Univ, Fac Marine Appl Biosci, Gunsan 54150, South Korea; [Seo, Min Ho] Marine Ecol Res Ctr, Yeosu 59697, South Korea; [Shin, Kyungsoon] Korea Inst Ocean Sci & Technol, Ballast Water Res Ctr, Geoje 53201, South Korea; [Li, Zhun] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures KCTC, Biol Resource Ctr, Jeongeup 56212, South Korea	Korea Institute of Ocean Science & Technology (KIOST); National Institute of Fisheries Science; Hanyang University; Korea Institute of Ocean Science & Technology (KIOST); Kunsan National University; Korea Institute of Ocean Science & Technology (KIOST); Korea Research Institute of Bioscience & Biotechnology (KRIBB)	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.; Li, Z (通讯作者)，Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures KCTC, Biol Resource Ctr, Jeongeup 56212, South Korea.	shh961121@kiost.ac.kr; lizhun@kribb.re.kr	Li, Zhun/IUQ-5309-2023; Park, Bum/W-3178-2017	LI, ZHUN/0000-0001-8961-9966; Shin, Hyeon Ho/0000-0002-9711-6717	Marine Biotics project [20210469]; Ministry of Ocean and Fisheries; Korean Culture Collection of Microalgae and Collaboration Center [NRF- 2022M3H9A1083416]; Techniques for the Management and Evaluation of Biofouling on Ship Hulls [20210651]; NIFS [R2022069]; KIOST [PEA0121]; Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program [KGM5232322]	Marine Biotics project; Ministry of Ocean and Fisheries; Korean Culture Collection of Microalgae and Collaboration Center; Techniques for the Management and Evaluation of Biofouling on Ship Hulls; NIFS; KIOST; Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program	This work was supported by grants from the Marine Biotics project (20210469) funded by the Ministry of Ocean and Fisheries, the Korean Culture Collection of Microalgae and Collaboration Center (NRF- 2022M3H9A1083416), Techniques for the Management and Evaluation of Biofouling on Ship Hulls (20210651), the NIFS (R2022069) and KIOST (PEA0121) projects, and the Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program (KGM5232322).	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Pollut. Bull.	JUN	2023	191								114995	10.1016/j.marpolbul.2023.114995	http://dx.doi.org/10.1016/j.marpolbul.2023.114995		MAY 2023	7	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	I0OG8	37146546				2025-03-11	WOS:000999849000001
J	Goryacheva, AA; Glinskikh, LA; Dzyuba, OS; Urman, OS; Shurygin, BN				Goryacheva, A. A.; Glinskikh, L. A.; Dzyuba, O. S.; Urman, O. S.; Shurygin, B. N.			The First Data on Middle Jurassic Dinoflagellate Cysts and Foraminifera of the Russian Far East	DOKLADY EARTH SCIENCES			English	Article						microphytofossils; foraminifera; Middle Jurassic; Far East	BASIN	The first records of dinocysts and foraminifers in the Middle Jurassic deposits of the Russian Far East and their taxonomic affiliation are reported. The use of foraminiferal and ostracod assemblages as a tool for biostratigraphic subdivision and correlation of the Middle Jurassic sections of this region is very difficult due to the poor preservation and limited occurrence of these microfossils. Findings of the dinocysts Endoscrinium galeritum,Tubotuberella cf. apatela,Wanaea fimbriata, and Meiourogonyaulax cf. caytonensis raise the question of correcting the stratigraphic range of the lithological formations recognized in the Middle Jurassic.	[Goryacheva, A. A.; Glinskikh, L. A.; Dzyuba, O. S.; Urman, O. S.; Shurygin, B. N.] Russian Acad Sci, Trofimuk Inst Petr Geol & Geophys, Siberian Branch, Novosibirsk 630090, Russia	Russian Academy of Sciences; Trofimuk Institute of Petroleum Geology & Geophysics; Siberian Branch of the Russian Academy of Sciences	Goryacheva, AA (通讯作者)，Russian Acad Sci, Trofimuk Inst Petr Geol & Geophys, Siberian Branch, Novosibirsk 630090, Russia.	goryachevaaa@ipgg.sbras.ru	Dzyuba, Oksana/I-8639-2018; Anna, Goryacheva/T-5116-2017; Shurygin, Boris/I-8387-2018	Dzyuba, Oksana/0000-0003-1523-8153; Anna, Goryacheva/0000-0002-9012-7376; Shurygin, Boris/0000-0001-5512-7509				Anoikin V. I., 2003, SER BUREINSKAYA, V2nd; Dzyuba O. S., 2020, P 8 ALL RUSS M INT P, P59; Fensome Robert A., 2004, AASP Contributions Series, V42, P1; Glinskikh LA, 2018, PALEONTOL J+, V52, P221, DOI 10.1134/S0031030118030048; Goryacheva AA, 2017, STRATIGR GEO CORREL+, V25, P265, DOI 10.1134/S0869593817030042; Ilyina VI, 2005, MICROPAL SOC SPEC PU, P109; Kirillova GL, 2012, RUSS J PAC GEOL, V6, P294, DOI 10.1134/S1819714012040021; Kirillova G. L., 2012, BUREYA SEDIMENTARY B; Marinov VA, 2019, RUSS J PAC GEOL, V13, P390, DOI 10.1134/S1819714019040043; [Маринов Владимир Аркадьевич Marinov Vladimir Arkad''evich], 2005, [Тихоокеанская геология, Russian Journal of Pacific Geology, Tikhookeanskaya geologiya], V24, P95; Medvedeva SA, 2014, RUSS J PAC GEOL, V8, P300, DOI 10.1134/S1819714014040058; Petruk N. N., 2009, SER FAR E SHEET; Riding J.B., 1999, American Association of Stratigraphic Palynologists Contributions Series, V36, P1; Sei I. I., 2004, MESOZOIC FAUNA RUSSI; Sei I. I., 1980, BIOSTRATIGRAPHY LOWE; Sharovskaya N. V., 1958, COLLECTION SCI PAPER, P31; Sharueva L. I., 2016, SER FAR E SHEET; Vaskin A. F., 2009, SER FAR E SHEET	18	1	1	0	0	MAIK NAUKA/INTERPERIODICA/SPRINGER	NEW YORK	233 SPRING ST, NEW YORK, NY 10013-1578 USA	1028-334X	1531-8354		DOKL EARTH SCI	Dokl. Earth Sci.	MAY	2023	510	1					293	297		10.1134/S1028334X23600147	http://dx.doi.org/10.1134/S1028334X23600147			5	Geosciences, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Geology	G7QJ9					2025-03-11	WOS:000991057500010
J	Li, QD; Li, PF; Duan, SS; Liu, CY; Xie, LJ; Yang, GP				Li, Qin-Dao; Li, Pei-Feng; Duan, Shan-Shan; Liu, Chun-Ying; Xie, Li-Jun; Yang, Gui-Peng			Effects of elevated temperature and acidification on sulfate assimilation and reduction of microalgae	JOURNAL OF APPLIED PHYCOLOGY			English	Article						Temperature; Acidification; Sulfate assimilation and reduction; Phaeodactylum tricornutum; Amphidinium carterae	DIATOM THALASSIOSIRA-PSEUDONANA; DIMETHYL SULFIDE; DIMETHYLSULFONIOPROPIONATE DMSP; PHOTOCHEMICAL TRANSFORMATION; OCEANIC PHYTOPLANKTON; PHAEOCYSTIS GLOBOSA; EMILIANIA-HUXLEYI; SULFUR; BIOSYNTHESIS; GROWTH	Increased temperature and acidification are two important environmental factors affecting algal growth in marine ecosystems with the increase of atmospheric CO2. The dinoflagellate Amphidinium carterae and the diatom Phaeodactylum tricornutum were chosen to study the effect of warming and acidification on their sulfate assimilation and reduction processes by continuous incubation at different temperatures (15, 20 and 25 degrees C) and pH(NBS) values (8.10, 7.80 and 7.60). Variations in associated sulfur compounds, namely sulfate, dimethylsulfoniopropionate (DMSP), dimethylsulfide (DMS) and acrylic acid (AA) were observed. The largest sulfate uptake was at 25 degrees C for A. carterae and at 20 degrees C for P. tricornutum, however, the optimal growth temperature for both microalgae was 20 degrees C. The release of DMSP and DMS decreased in A. carterae while they increased in P. tricornutum under the condition of increased temperature. Seawater acidification increased the uptake of sulfate and promoted the growth of the microalgae. Acidification also reduced the release of DMSP, dissolved DMSP (DMSPd), DMS and AA from A. carterae with mean values of 55%, 22%, 9% and 40%, respectively. However, acidification increased the release of DMSP and DMSPd by P. tricornutum with mean values of 44% and 186%, the release of DMS was inhibited (25%) and with no significant difference in the release of AA (2%). Amino acids were found to inhibit the uptake of sulfate by the two microalgae, and the inhibitory effect of cysteine was found to be stronger than that of methionine. The inhibitory effect of amino acids was temperature sensitive and relatively weak at 20 degrees C. Besides, acidification could enhance the inhibitory effect and was evident in A. carterae. The sulfur metabolism intermediates (cysteine and methionine) have a feedback regulation effect on the sulfate absorption process of algae.	[Li, Qin-Dao; Li, Pei-Feng; Duan, Shan-Shan; Liu, Chun-Ying; Xie, Li-Jun; Yang, Gui-Peng] Ocean Univ China, Frontiers Sci Ctr Deep Ocean Multispheres & Earth, Key Lab Marine Chem Theory & Technol, Minist Educ, 238 Songling Rd, Qingdao 266100, Peoples R China; [Li, Qin-Dao; Li, Pei-Feng; Duan, Shan-Shan; Liu, Chun-Ying; Xie, Li-Jun; Yang, Gui-Peng] Ocean Univ China, Coll Chem & Chem Engn, 238 Songling Rd, Qingdao 266100, Peoples R China; [Li, Qin-Dao; Liu, Chun-Ying; Xie, Li-Jun; Yang, Gui-Peng] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China	Ocean University of China; Ocean University of China; Laoshan Laboratory	Liu, CY (通讯作者)，Ocean Univ China, Frontiers Sci Ctr Deep Ocean Multispheres & Earth, Key Lab Marine Chem Theory & Technol, Minist Educ, 238 Songling Rd, Qingdao 266100, Peoples R China.; Liu, CY (通讯作者)，Ocean Univ China, Coll Chem & Chem Engn, 238 Songling Rd, Qingdao 266100, Peoples R China.; Liu, CY (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.	roseliu@ouc.edu.cn	Yang, Gui-Peng/GZG-6468-2022; Li, Peifeng/E-9421-2015; Xie, li/HGE-6052-2022		Natural Science Foundation of Shandong Province, China [ZR2021MD113]; National Key Research and Development Program of China [2016YFA0601301]; National Natural Science Foundation of China [41676065]	Natural Science Foundation of Shandong Province, China(Natural Science Foundation of Shandong Province); National Key Research and Development Program of China(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was financially supported by the Natural Science Foundation of Shandong Province, China (ZR2021MD113), the National Key Research and Development Program of China (No 2016YFA0601301) and the National Natural Science Foundation of China (No. 41676065)	Alcolombri U, 2015, SCIENCE, V348, P1466, DOI 10.1126/science.aab1586; ANDREAE MO, 1985, J GEOPHYS RES-ATMOS, V90, P2891, DOI 10.1029/JD090iD07p12891; Archer SD, 2009, MAR ECOL PROG SER, V394, P111, DOI 10.3354/meps08284; Bajt O, 1997, MAR CHEM, V58, P255, DOI 10.1016/S0304-4203(97)00052-2; Bell TG, 2010, GLOBAL BIOGEOCHEM CY, V24, DOI 10.1029/2009GB003617; Berge T, 2010, MAR ECOL PROG SER, V416, P79, DOI 10.3354/meps08780; BIEDLINGMAIER S, 1989, Z NATURFORSCH C, V44, P495; Bochenek M, 2013, NEW PHYTOL, V199, P650, DOI 10.1111/nph.12303; Boucher O, 2002, GEOPHYS RES LETT, V29, DOI 10.1029/2001GL014048; Bowler C, 2010, ANNU REV MAR SCI, V2, P333, DOI 10.1146/annurev-marine-120308-081051; Boyd PW, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0063091; BRETON A, 1977, J BACTERIOL, V132, P224, DOI 10.1128/JB.132.1.224-232.1977; Caldeira K, 2005, J GEOPHYS RES-OCEANS, V110, DOI 10.1029/2004JC002671; CHALLENGER F, 1948, J CHEM SOC, P1591, DOI 10.1039/jr9480001591; CHARLSON RJ, 1987, NATURE, V326, P655, DOI 10.1038/326655a0; Curson ARJ, 2018, NAT MICROBIOL, V3, P430, DOI 10.1038/s41564-018-0119-5; Curson ARJ, 2017, NAT MICROBIOL, V2, DOI 10.1038/nmicrobiol.2017.9; Curson ARJ, 2011, NAT REV MICROBIOL, V9, P849, DOI 10.1038/nrmicro2653; DACEY JWH, 1987, GEOPHYS RES LETT, V14, P1246, DOI 10.1029/GL014i012p01246; DACEY JWH, 1986, SCIENCE, V233, P1314, DOI 10.1126/science.233.4770.1314; DEANE EM, 1975, ARCH MICROBIOL, V105, P295, DOI 10.1007/BF00447149; Deng LiMing Deng LiMing, 2009, China Tropical Medicine, V9, P363; EPPLEY RW, 1972, FISH B-NOAA, V70, P1063; Evans C, 2006, LIMNOL OCEANOGR, V51, P2468, DOI 10.4319/lo.2006.51.5.2468; Galí M, 2015, GLOBAL BIOGEOCHEM CY, V29, P496, DOI 10.1002/2014GB004940; Galí M, 2015, REMOTE SENS ENVIRON, V171, P171, DOI 10.1016/j.rse.2015.10.012; Gárate-Lizárraga I, 2019, MAR POLLUT BULL, V146, P532, DOI 10.1016/j.marpolbul.2019.06.073; Garren M, 2014, ISME J, V8, P999, DOI 10.1038/ismej.2013.210; GIOVANELLI J, 1978, J BIOL CHEM, V253, P5665; Goldman JAL, 2017, PHOTOSYNTH RES, V132, P83, DOI 10.1007/s11120-016-0330-2; GREEN LS, 1988, J BACTERIOL, V170, P583, DOI 10.1128/jb.170.2.583-587.1988; GREENE RC, 1962, J BIOL CHEM, V237, P2251; Gross M, 2012, CURR BIOL, V22, pR581, DOI 10.1016/j.cub.2012.07.041; Guillard R. 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Appl. Phycol.	AUG	2023	35	4					1603	1619		10.1007/s10811-023-02972-7	http://dx.doi.org/10.1007/s10811-023-02972-7		APR 2023	17	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	M6VI8					2025-03-11	WOS:000980146300005
J	Mertens, KN; Retho, M; Manach, S; Zoffoli, ML; Doner, A; Schapira, M; Bilien, G; Séchet, V; Lacour, T; Robert, E; Duval, A; Terre-Terrillon, A; Derrien, A; Gernez, P				Mertens, Kenneth Neil; Retho, Michael; Manach, Soazig; Zoffoli, Maria Laura; Doner, Anne; Schapira, Mathilde; Bilien, Gwenael; Sechet, Veronique; Lacour, Thomas; Robert, Elise; Duval, Audrey; Terre-Terrillon, Aouregan; Derrien, Amelie; Gernez, Pierre			An unprecedented bloom of<i> Lingulodinium</i><i> polyedra</i> on the French Atlantic coast during summer 2021	HARMFUL ALGAE			English	Article						Seed bank; Yessotoxins; Vilaine Bay; Southern Brittany; Harmful algal blooms	DINOFLAGELLATE CYSTS; RED-TIDE; VILAINE BAY; SEASONAL-VARIATION; PHYTOPLANKTON; EUTROPHICATION; DINOPHYCEAE; BISCAY; BRITTANY; YESSOTOXINS	At the end of July 2021, a bloom of Lingulodinium polyedra developed along the French Atlantic coast and lasted six weeks. The REPHY monitoring network and the citizen participation project PHENOMER contributed to its observation. A maximum concentration of 3,600,000 cells/L was reached on the 6th of September, a level never recorded on French coastlines. Satellite observation confirmed that the bloom reached its highest abundance and spatial extension early September, covering about 3200 km2 on the 4th of September. Cultures were established, and morphology and ITS-LSU sequencing identified the species as L. polyedra. The thecae displayed the characteristic tabulation and sometimes a ventral pore. The pigment composition of the bloom was similar to that of cultured L. polyedra, confirming that phytoplankton biomass was dominated by this species. The bloom was preceded by Leptocylindrus sp., developed over Lepidodinium chlorophorum, and was succeeded by elevated Noctiluca scintillans concentrations. Afterwards, relatively high abundance of Alexandrium tamarense were observed in the embayment where the bloom started. Unusually high precipitation during mid-July increased river discharges from the Loire and Vilaine rivers, which likely fueled phytoplankton growth by providing nutrients. Water masses with high numbers of dinoflagellates were characterized by high sea surface temperature and thermohaline stratification. The wind was low during the bloom development, before drifting it offshore. Cysts were observed in the plankton towards the end of the bloom, with concentrations up to 30,000 cysts/L and relative abundances up to 99%. The bloom deposited a seed bank, with cyst concentrations up to 100,000 cysts/g dried sediment, particularly in fine-grained sediments. The bloom caused hypoxia events, and concentrations of yessotoxins up to 747 mu g/kg were recorded in mussels, below the safety threshold of 3,750 mu g/kg. Oysters, clams and cockles also were contaminated with yessotoxins, but at lower concentrations. The established cultures did not produce yessotoxins at detectable levels, although yessotoxins were detected in the sediment. The unusual environmental summertime conditions that triggered the bloom, as well as the establishment of considerable seed banks, provide important findings to understand future harmful algal blooms along the French coastline.	[Mertens, Kenneth Neil; Doner, Anne; Bilien, Gwenael; Duval, Audrey; Terre-Terrillon, Aouregan; Derrien, Amelie] Ifremer, LITTORAL, F-29900 Concarneau, France; [Retho, Michael; Manach, Soazig] Ifremer, LITTORAL, F-56100 Lorient, France; [Zoffoli, Maria Laura] CNR, Ist Sci Marine CNR ISMAR, I-00133 Rome, Italy; [Schapira, Mathilde] Ifremer, LITTORAL, F-44300 Nantes, France; [Sechet, Veronique; Lacour, Thomas] Ifremer, PHYTOX, Lab PHYSALG, F-44000 Nantes, France; [Robert, Elise] Ifremer, PHYTOX, Lab GENALG, F-44000 Nantes, France; [Gernez, Pierre] Nantes Univ, Inst Subst & Organismes Mer, ISOMer, UR 2160, F-44000 Nantes, France	Ifremer; Ifremer; Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Marine (ISMAR-CNR); Ifremer; Ifremer; Ifremer; Nantes Universite	Mertens, KN (通讯作者)，Ifremer, LITTORAL, F-29900 Concarneau, France.	kenneth.mertens@ifremer.fr	Mertens, Kenneth/AAO-9566-2020; Lacour, Thomas/ISB-1473-2023; Gernez, Pierre/G-8922-2011; Mertens, Kenneth/C-3386-2015	gernez, pierre/0000-0003-2055-410X; Derrien, Amelie/0000-0001-9656-7850; Retho, Michael/0000-0002-7260-5477; sechet, veronique/0000-0002-7085-3215; Zoffoli, Maria Laura/0000-0003-1892-0051; Mertens, Kenneth/0000-0003-2005-9483; Anne, DONER/0000-0002-1006-8047; Schapira, Mathilde/0000-0002-0130-9398	Sigma 300 FE-SEM - Regional Council of Brittany; Regional Council of Brittany; General Council of Finistere and the Urban Community of Concarneau-Cornouaille-Agglomeration; Centre National d'Etudes Spatiales; Region Pays de la Loire [LEPIDO-PEN [06582 2019]]; Agence de l'Eau Loire Bretagne [EPICE [180408801]]; Agence Nationale de la Recherche for France 2030 [ANR-22-POCE-0006]; H2020 RISE project EMERTOX-Emergent Marine Toxins in the North Atlantic and Mediterranean [778069]; Marie Curie Actions (MSCA) [778069] Funding Source: Marie Curie Actions (MSCA)	Sigma 300 FE-SEM - Regional Council of Brittany; Regional Council of Brittany(Region Bretagne); General Council of Finistere and the Urban Community of Concarneau-Cornouaille-Agglomeration; Centre National d'Etudes Spatiales(Centre National D'etudes Spatiales); Region Pays de la Loire(Region Pays de la Loire); Agence de l'Eau Loire Bretagne; Agence Nationale de la Recherche for France 2030(Agence Nationale de la Recherche (ANR)Agence nationale pour le developpement de la recherche en sante (ANDRS)); H2020 RISE project EMERTOX-Emergent Marine Toxins in the North Atlantic and Mediterranean; Marie Curie Actions (MSCA)(Marie Curie Actions)	We like to thank Sylvain Ballu (CEVA) for providing the aerial photographs. The Sigma 300 FE-SEM used in this study was funded by The Regional Council of Brittany, the General Council of Finistere and the Urban Community of Concarneau-Cornouaille-Agglomeration. The authors acknowledge EUTMESAT and ESA for the Sentinel -3 observations. Part of this research was supported by the Centre National d'Etudes Spatiales (TOSCA projects LASHA and OSYNICO) , Region Pays de la Loire (project LEPIDO-PEN [06582 2019] , Agence de l'Eau Loire Bretagne (project EPICE [180408801] ) . This work benefited from a national funding through the Agence Nationale de la Recherche for France 2030 under the reference ANR-22-POCE-0006. KNM and VS acknowledge the project H2020 RISE project EMERTOX-Emergent Marine Toxins in the North Atlantic and Mediterranean: New Approaches to Assess their Occurrence and Future Scenarios in the Framework of Global Environmental Changes -Grant Agreement No. 778069. 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J	Salgado, P; Pizarro, G; Frangopulos, M; Pinto-Torres, M; Toro, C; Torres, R; Alarcon, E; Guzman, L; Manriquez, K; Raimapo, R; Cascales, E				Salgado, Pablo; Pizarro, Gemita; Frangopulos, Maximo; Pinto-Torres, Marco; Toro, Carolina; Torres, Rodrigo; Alarcon, Emilio; Guzman, Leonardo; Manriquez, Karen; Raimapo, Roberto; Cascales, Emma			Distribution of dinoflagellate cyst assemblages in surface sediments of Magellan fjords and channels (Patagonia, Chile) with a focus on harmful species: An overview on environmental scenario	PROGRESS IN OCEANOGRAPHY			English	Review						Alexandrium catenella; Cyst assemblages; Environmental parameters; Harmful dinoflagellates; Magellan fjords and channels	SOUTHERN CHILE; ALEXANDRIUM-CATENELLA; BLOOM DYNAMICS; RESTING CYSTS; FRESH-WATER; GYMNODINIUM-CATENATUM; SCRIPPSIELLA-HANGOEI; GENUS ALEXANDRIUM; ALGAL BLOOMS; SP-NOV	Several dinoflagellate species form benthic resting cysts in their life cycle. In order to study the composition, abundance and distribution of cyst assemblages, with a focus on harmful species, thirty-one surface sediment samples from the Magellan fjords and channels system were analysed. In situ (temperature, salinity, inorganic nutrients, dissolved oxygen, organic matter, and chlorophyll-a) and five-year (salinity, temperature, dissolved oxygen, and chlorophyll-a) measurement data were analysed to obtain an overview on environmental scenario. A total of 56 cyst morphotypes were recorded, some of which were identified for the first time for the Chilean coast (Dactylodinium cf. arachnoides, Impagidinium cf. velorum, Archaeperidinium sp., Protoperidinium haizhouense, Pro-toperidinium sinuosum, Protoperidinium tricingulatum, and Dubridinium cf. ulsterum). In vitro germination of cysts allowed the vegetative form of the species of the order Suessiales to be determined. Total cyst concentrations were highly variable, ranging from 145 to 5453 cysts mL-1 of wet sediment (mean 1246 +/- 1061 cysts mL-1), with the lowest cyst values in the area adjacent to the Southern Patagonian Ice Field. Pentapharsodinium dalei and Protoperidinium conicoides generally dominated (%) the cyst assemblages. The harmful species Alexandrium cat-enella and Alexandrium ostenfeldii were not abundant and sparsely distributed, while Protoceratium reticulatum was widespread and highly abundant with Gonyaulax spinifera in Inutil Bay (Magellan Strait). Cluster and nMDS analyses performed with cyst concentrations of the 56 taxa in the 31 stations formed seven cyst assemblage clusters, reflecting high environmental variability. Canonical correspondence analyses performed with cyst concentrations and in situ and long-term environmental data showed different ecological signals, demonstrating that in situ parameters must be used carefully when studying cysts in surface sediments.	[Salgado, Pablo; Pizarro, Gemita; Toro, Carolina; Raimapo, Roberto] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Enrique Abello 0552, Punta Arenas, Chile; [Frangopulos, Maximo] Univ Magallanes, Ctr Invest GAIA Antartica CIGA, Av Bulnes 01855, Punta Arenas, Chile; [Frangopulos, Maximo] Univ Magallanes, Cape Horn Int Ctr CHIC, Puerto Williams, Chile; [Frangopulos, Maximo] Millennium Inst Biodivers Antarctic & Subantarctic, Las Palmeras 3425, Santiago, Chile; [Pinto-Torres, Marco] Univ Austral Chile, Escuela Grad, Programa Doctorado Ciencias Acuicultura, Puerto Montt, Chile; [Pinto-Torres, Marco; Torres, Rodrigo] Ctr Invest Dinam Ecosistemas Marinos Altas Latitud, Punta Arenas, Chile; [Torres, Rodrigo; Alarcon, Emilio] Ctr Invest Ecosistemas Patagonia CIEP, Jose de Moraleda 16, Coyhaique, Chile; [Guzman, Leonardo; Cascales, Emma] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Padre Harter 574, Puerto Montt, Chile; [Manriquez, Karen] Univ Andres Bello UNAB, Fac Ciencias Vida, Dept Ecol & Biodivers, Republ 440, Santiago, Chile	Instituto de Fomento Pesquero (Valparaiso); Universidad de Magallanes; Universidad de Magallanes; Universidad Austral de Chile; Instituto de Fomento Pesquero (Valparaiso); Universidad Andres Bello	Salgado, P (通讯作者)，Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Enrique Abello 0552, Punta Arenas, Chile.	pablo.salgado@ifop.cl	Frangopulos, Maximo/ABC-8933-2020; Salgado, Pablo/KMA-0636-2024	Pinto Torres, Marco Antonio/0000-0002-5942-206X; pizarro, gemita/0000-0003-2974-2609; frangopulos, maximo/0000-0002-6857-273X; Torres, Rodrigo/0000-0003-0416-4291	Comite Oceanografico Nacional [CONA-C25F, 21160047]; "Concurso Nacional de Asignacion de Tiempo de Buque Oceanografico AGS-61 Cabo de Hornos 2019" - Associative Research Program PIA-CONICYT/ANID [CONA C25F 19-02]; Undersecretary of Economy and Smaller Companies and Undersecretary of Fisheries and Aquaculture; ANID - Millennium Science Initiative Program; ANID BASAL; Aquaculture Sciences at the Universidad Austral de Chile, Centro Fondap IDEAL; Doctorado Becas Chile;  [PROFAN AUB 1900003];  [ICN2021_002];  [FB210018];  [15150003]	Comite Oceanografico Nacional; "Concurso Nacional de Asignacion de Tiempo de Buque Oceanografico AGS-61 Cabo de Hornos 2019" - Associative Research Program PIA-CONICYT/ANID; Undersecretary of Economy and Smaller Companies and Undersecretary of Fisheries and Aquaculture; ANID - Millennium Science Initiative Program; ANID BASAL; Aquaculture Sciences at the Universidad Austral de Chile, Centro Fondap IDEAL; Doctorado Becas Chile; ; ; ; 	This work was funded by Comite Oceanografico Nacional (CONA-C25F, 2019) by the projects CONA C25F 19-02 (G. Pizarro) and PROFAN AUB 1900003 of the "Concurso Nacional de Asignacion de Tiempo de Buque Oceanografico AGS-61 Cabo de Hornos 2019" - Associative Research Program PIA-CONICYT/ANID. G. Pizarro and R. Raimapo participated in CIMAR-25 and P. Salgado and G. Pizarro in PROFAN supported by the Undersecretary of Economy and Smaller Companies and Undersecretary of Fisheries and Aquaculture, through the project "Programa de manejo y monitoreo de las mareas rojas en el sistema de fiordos y canales de Chile, etapa XIII 2019-2020" carried out by IFOP. Authors acknowledge the commander and the crew of the AGS-61 Cabo de Hornos of the Chilean Navy for their support during the oceanographic campaigns. The work of the Servicio Hidrografico y Oceanografico of the Chilean Navy (SHOA) is also recognized. M. Fragopulos also thanks ANID - Millennium Science Initiative Program - ICN2021_002 and ANID BASAL FB210018. M. Pinto-Torres thanks the doctoral program in Aquaculture Sciences at the Universidad Austral de Chile, Centro Fondap IDEAL 15150003 and to Doctorado Becas Chile - 2016 -Folio No 21160047 for the logistical and instrumental support, shipment and processing of the samples used here. We thank the two anonymous reviewers who helped to improve the manuscript with their constructive comments, and to the native reviewer who grammatically corrected the text.	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J	Smith, BC; Persson, A; Alix, JH				Smith, Barry C.; Persson, Agneta; Alix, Jennifer H.			Dinoflagellate cell density limits explored using <i>Scrippsiella lachrymosa</i> cultured in flow-through cages	JOURNAL OF APPLIED PHYCOLOGY			English	Article						Culturing; Dinoflagellate; Gamete; Life stage; Red tide; Scrippsiella lachrymosa	HARMFUL ALGAL BLOOMS; LIFE-CYCLE STAGES; ALEXANDRIUM-FUNDYENSE; ACTIVATED CARBON; DRINKING-WATER; CYST FORMATION; RED TIDE; TOXICITY; DYNAMICS; PATTERNS	Dinoflagellates constitute one of the most important groups of primary producers and micro-zooplankton on earth, common in both marine and freshwater environments. Despite their prominent position among phytoplankton, they are difficult to grow into dense cultures in the laboratory. This discrepancy between field and laboratory indicates serious limitations caused by the laboratory culturing conditions. A difficult to study but important factor is the constraints of enclosure in a limited volume of water. We conducted an experiment wherein the dinoflagellate Scrippsiella lachrymosa was grown in "flow cells" - 100 cm(3) cylindrical cages constructed from plankton net, inserted in larger volumes of growth medium, allowing an exchange of medium without dilution of the culture. Cell numbers far exceeding the normal for culturing of this species and dinoflagellates in general were attained, even though the experiment was terminated before cultures reached stationary phase. A cell number ten times higher than under regular batch culturing was achieved (up to 340,000 cells mL(-1)). Pattern formation was distinct in cultures when cells were plentiful and water movements caused cell accumulation, not dispersion. High cell density concurrent with access to new growth medium promoted induction of the sexual cell cycle. The results indicate serious limitations to growth set by enclosure in a limited water volume in laboratory experiments; thus, maximum growth rates of dinoflagellates in favourable field conditions may be vastly underestimated. Cell accumulation behavior of dinoflagellates during the sexual life cycle may together with physical transport by larger forces in nature explain sudden bloom occurrences.	[Smith, Barry C.; Alix, Jennifer H.] NOAA, Natl Marine Fisheries Serv, Northeast Fisheries Sci Ctr, Milford Lab, 212 Rogers Ave, Milford, CT USA; [Persson, Agneta] Gothenburg Univ, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden	National Oceanic Atmospheric Admin (NOAA) - USA; University of Gothenburg	Smith, BC (通讯作者)，NOAA, Natl Marine Fisheries Serv, Northeast Fisheries Sci Ctr, Milford Lab, 212 Rogers Ave, Milford, CT USA.	Barry.Smith@noaa.gov; agnetapersson77@gmail.com		Persson, Agneta/0000-0003-0202-6514	Signe and Olof Wallenius foundation; J. Gust. Richert's foundation	Signe and Olof Wallenius foundation; J. Gust. Richert's foundation	Financial support to Agneta Persson was provided by Signe and Olof Wallenius foundation and J. Gust. Richert's foundation.	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J	Cuellar-Martinez, T; Morquecho, L; Alonso-Rodríguez, R; Ruiz-Fernández, AC; Sanchez-Cabeza, JA				Cuellar-Martinez, Tomasa; Morquecho, Lourdes; Alonso-Rodriguez, Rosalba; Ruiz-Fernandez, Ana Carolina; Sanchez-Cabeza, Joan-Albert			Germination of <i>Pyrodinium bahamense</i> Cysts from a Pristine Lagoon in San José Island, Gulf of California: Implications of Long-Term Survival	PHYCOLOGY			English	Article						coastal lagoons; dinoflagellate cysts; germination; harmful algal blooms; recent sediments; Mexico; Gulf of California; Baja California Sur	ALEXANDRIUM-FUNDYENSE; DINOFLAGELLATE CYSTS; RESTING CYSTS; EXCYSTMENT PATTERNS; DINOPHYCEAE; VIABILITY; CATENELLA; SEDIMENTS; DYNAMICS; PHYTOPLANKTON	The production of cysts by dinoflagellates can be part of the life cycle of some species, improving their survival under adverse environmental conditions; cyst germination may explain the recurrence of algal blooms in some cases. In order to evaluate the germination rates of Pyrodinium bahamense, its cysts were retrieved from surface sediments collected in San Jos & eacute; Lagoon, SW Gulf of California, and germination assays were carried out through the cysts incubation under two contrasting light and nutrient concentration conditions. Also, to evaluate cysts viability, we isolated P. bahamense cysts and other dinoflagellate species from different depth layers of a Pb-210-dated sediment core (similar to 100 years) to examine their germination for 20 days. Germination rates were higher under light (28-56%) than in darkness (23-34%); there were indications that the nutrient-enriched media was more effective in promoting germination than seawater. Furthermore, germination was observed in cysts isolated from all selected core depths, even those corresponding to similar to 100 years. These results demonstrate that cysts remain viable for long periods, and P. bahamense cysts germinate in any light and nutrient conditions. The results of this research provide relevant information to understand its physiology and complex population dynamics. This species should be closely monitored in the area in the context of climate change, as current natural conditions are likely to change.	[Cuellar-Martinez, Tomasa] Inst Mar Peru, Esquina Gamarra & Gen Valle S-N, Callao, Peru; [Morquecho, Lourdes] Ctr Invest Biol Noroeste CIBNOR, Ave IPN 195, La Paz 23096, Baja Calif Sur, Mexico; [Alonso-Rodriguez, Rosalba; Ruiz-Fernandez, Ana Carolina; Sanchez-Cabeza, Joan-Albert] Univ Nacl Autonoma Mexico, Unidad Acad Mazatlan, Inst Ciencias Mar & Limnol, Mazatlan 82040, Sinaloa, Mexico	Instituto del Mar del Peru; CIBNOR - Centro de Investigaciones Biologicas del Noroeste; Universidad Nacional Autonoma de Mexico	Alonso-Rodríguez, R (通讯作者)，Univ Nacl Autonoma Mexico, Unidad Acad Mazatlan, Inst Ciencias Mar & Limnol, Mazatlan 82040, Sinaloa, Mexico.		Morquecho, Lourdes/JPY-0626-2023; Sanchez-Cabeza, Joan-Albert/Q-2394-2016; Alonso-Rodriguez, Rosalba/U-9896-2017	Cuellar Martinez, Tomasa/0000-0002-0460-6275; Sanchez-Cabeza, Joan-Albert/0000-0002-3540-1168; Alonso-Rodriguez, Rosalba/0000-0001-7716-3869	CONACYT; PAPIIT-UNAM [IN112914, IN203313, CIBNOR-CODIMAR 20014, PROMEP/103.5/13/9335, IAEA-ARCAL RLA 7014, 7020, 7025, 307783];  [196813];  [153492]	CONACYT(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); PAPIIT-UNAM(Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica (PAPIIT)Universidad Nacional Autonoma de Mexico); ; 	This research was funded by CONACYT 196813 and 153492, PAPIIT-UNAM IN112914 and IN203313, CIBNOR-CODIMAR 20014, PROMEP/103.5/13/9335, FONDECYT 05/2019/ and IAEA-ARCAL RLA 7014, 7020, and 7025. This work is a contribution of the Marine-Coastal Research Stressors Network for Latin America and the Caribbean (REMARCO, www.remarco.org, accessed on 30 January 2023). T. Cuellar was a recipient of a Ph. D. CONACYT fellowship (307783).	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J	Roux, P; Schapira, M; Mertens, KN; Andre, C; Terre-Terrillon, A; Schmitt, A; Manach, S; Collin, K; Serghine, J; Noel, C; Siano, R				Roux, Pauline; Schapira, Mathilde; Mertens, Kenneth Neil; Andre, Coralie; Terre-Terrillon, Aouregan; Schmitt, Anne; Manach, Soazig; Collin, Karine; Serghine, Joelle; Noel, Cyril; Siano, Raffaele			When phytoplankton do not bloom: the case of the dinoflagellate <i>Lepidodinium chlorophorum</i> in southern Brittany (France) assessed by environmental DNA	PROGRESS IN OCEANOGRAPHY			English	Review						HABs; Cysts; Sediment resuspension; eDNA; Metabarcoding; Ammonium	DISSOLVED ORGANIC NITROGEN; ALEXANDRIUM-CATENELLA; RESTING CYSTS; GYMNODINIUM-CHLOROPHORUM; MARINE-PHYTOPLANKTON; GREEN DINOFLAGELLATE; SEQUENCING REVEALS; DINOPHYCEAE; GULF; SEDIMENTS	Green seawater discolorations caused by the marine dinoflagellate Lepidodinium chlorophorum are frequently observed during summer along southern Brittany coasts (NE Atlantic, France). Here, the ecology of L. chlorophorum is studied during a non-bloom period using high-throughput sequencing metabarcoding of environmental DNA (eDNA) samples for the detection of this species at low concentrations. Sediment samples (for metabarcoding and cyst analyses) were collected in January-February 2019 and water samples from two stations were collected at three water depths in September-March 2019-2020 and 2020-2021 (for meta-barcoding and environmental parameters). The protistan community was dominated by dinoflagellates and was homogenous in the water column. Amplicon sequence variants (ASVs) associated with the genus Lepidodinium were detected in autumn-winter at low relative abundances (minimum: 0.01%). Increases in Lepidodinium abundance were positively correlated with pulses of ammonium re-suspended from bottom sediments. Although Lepidodinium eDNA (<1%) was detected in the sediments, no cyst morphotypes could be associated with Lepidodinium , and germination experiments revealed no Lepidodinium-like cells, leaving in doubt the existence of resting cysts of this species in the seed bank. It is hypothesised that temporary Lepidodinium cells remained present in the water column at low concentrations during the autumn-winter period, awaiting ammonium input from sediments to initiate growth, and that blooms develop when water column stratification and river input provide favourable environmental conditions for biomass increases.	[Roux, Pauline; Schapira, Mathilde; Schmitt, Anne; Collin, Karine] Ifremer, LITTORAL, F-44300 Nantes, France; [Mertens, Kenneth Neil; Andre, Coralie; Terre-Terrillon, Aouregan] Ifremer, LITTORAL, F-29900 Concarneau, France; [Manach, Soazig] Ifremer, LITTORAL, F-56100 Lorient, France; [Serghine, Joelle; Siano, Raffaele] Ifremer, DYNECO, F-29280 Plouzane, France; [Andre, Coralie; Noel, Cyril] Ifremer, Serv Bioinformat SeBiMER, IRSI, Plouzane, France	Ifremer; Ifremer; Ifremer; Ifremer; Ifremer	Siano, R (通讯作者)，Ifremer, DYNECO, F-29280 Plouzane, France.	raffaele.siano@ifremer.fr	Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015	Noel, Cyril/0000-0002-7139-4073; Schapira, Mathilde/0000-0002-0130-9398; Collin, Karine/0000-0001-9601-9299; Mertens, Kenneth/0000-0003-2005-9483	Ifremer; Agence de l'Eau Loire Bretagne (project EPICE) [180408801]; Region Pays de la Loire (project LEPIDO-PEN) [06582 2019]; GDR PHYCOTOX, a CNRS/Ifremer network on Harmful Algal Blooms	Ifremer; Agence de l'Eau Loire Bretagne (project EPICE); Region Pays de la Loire (project LEPIDO-PEN); GDR PHYCOTOX, a CNRS/Ifremer network on Harmful Algal Blooms	This work was carried out in the frame of the PhD of Pauline Roux, financed by Ifremer, Agence de l'Eau Loire Bretagne (project EPICE [180408801]), Region Pays de la Loire (project LEPIDO-PEN [06582 2019]) and was supported by the GDR PHYCOTOX, a CNRS/Ifremer network on Harmful Algal Blooms (https://www.phycotox.fr/). The authors thank Ifremer-LER/MPL staff for their technical contributions and the Ifremer Plateforme d'Analyse Sedimentaire (PAS) for technical support during granulometry analyses. The authors wish to thank Julien Quere for his dedicated assistance in DNA extraction.	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Oceanogr.	MAR	2023	212								102999	10.1016/j.pocean.2023.102999	http://dx.doi.org/10.1016/j.pocean.2023.102999		FEB 2023	15	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	A0YW5		Green Submitted			2025-03-11	WOS:000952484600001
J	Liu, ML; Tillmann, U; Ding, GM; Wang, AJ; Gu, HF				Liu, Minlu; Tillmann, Urban; Ding, Guangmao; Wang, Aijun; Gu, Haifeng			Metabarcoding revealed a high diversity of Amphidomataceae (Dinophyceae) and the seasonal distribution of their toxigenic species in the Taiwan Strait	HARMFUL ALGAE			English	Article						Azadinium poporum; Azaspiracids; High -throughput sequencing; Quantitative pcr; Cyst	DINOFLAGELLATE GENUS AZADINIUM; SP-NOV; POPORUM DINOPHYCEAE; AZASPIRACID PROFILE; ARGENTINEAN SHELF; COASTAL WATERS; A.-POPORUM; DALIANENSE; MORPHOLOGY; PHYLOGENY	The dinophyte family Amphidomataceae includes the genera Azadinium and Amphidoma. Four of these species are known to produce azaspiracids, which are lipophilic phycotoxins accumulating in shellfish. The diversity and biogeography of Amphidomataceae is far from yet resolved. Here we performed a time series sampling of both water and sediments in the Taiwan Strait from Nov. 2018 to April 2021. Metabarcoding was performed to unveil the diversity of Amphidomataceae targeting internal transcribed spacer (ITS1) region and partial large subunit ribosomal DNA (LSU rDNA D1-D3), followed by quantitative PCR (qPCR) with modified primers for Az. poporum ribotypes. The diversity of Amphidomataceae was revealed from the water samples with the aid of ITS1 and LSU based molecular phylogeny. The LSU based approach detected only a few species. In contrast, ITS1 based dataset showed eight new Azadinium clades and several ZOTUs (zero-radius operational taxonomic units) grouping together with Am. languida. Moreover, eleven known Azadinium species including three ribotypes of Az. poporum and Az. dexteroporum, and two ribotypes of Az. spinosum, were detected. The latter two species have not been reported in China before. Among these toxigenic species, Az. poporum was relevantly abundant whereas others were rare. The maximum of 209 cells L-1 of Az. poporum ribotype A was estimated using qPCR nearby Quanzhou in Nov. 2018 and 172 cells L 1 of Az. poporum ribotype B was detected far off coast in Apr. 2021. Metabarcoding on sediment samples revealed Az. poporum ribotypes B and C, but strains obtained with sediment incubation experiments yielded only ribotype B. Using qPCR about 0.2 cysts g-1 of Az. poporum ribotype B were quantified in May 2019 but cysts of Az. poporum ribotype C were not detected. Our results suggest that metabarcoding targeting ITS1 region is powerful to uncover the diversity of harmful dinophytes. Our results also highlight the rich diversity of Amphidomataceae and risk potential of azaspiracids in the Taiwan Strait and surrounding waters.	[Liu, Minlu; Wang, Aijun; Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Tillmann, Urban] Alfred Wegener Inst, Helmholtz Zent Polar & Meeresforschung, Handelshafen 12, D-27570 Bremerhaven, Germany; [Ding, Guangmao] Fishery Resources Monitoring Ctr Fujian Prov, Fuzhou 350003, Peoples R China; [Gu, Haifeng] Minist Nat Resources, Key Lab Marine Ecol Conservat & Restorat, Xiamen 361005, Peoples R China; [Gu, Haifeng] Fujian Prov Key Lab Marine Ecol Conservat & Restor, Xiamen 361005, Peoples R China; [Wang, Aijun] Fujian Prov Key Lab Marine Phys & Geol Proc, Xiamen 361005, Peoples R China	Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Ministry of Natural Resources of the People's Republic of China	Gu, HF (通讯作者)，Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China.; Gu, HF (通讯作者)，Minist Nat Resources, Key Lab Marine Ecol Conservat & Restorat, Xiamen 361005, Peoples R China.; Gu, HF (通讯作者)，Fujian Prov Key Lab Marine Ecol Conservat & Restor, Xiamen 361005, Peoples R China.	guhaifeng@tio.org.cn	Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171	National Natural Science Foundation of China [42106140, 32072329]; Scientific Research Foundation of Third Institute of Oceanography [2020007]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Scientific Research Foundation of Third Institute of Oceanography	This project was supported by the National Natural Science Foundation of China (No. 42106140) , the Scientific Research Foundation of Third Institute of Oceanography, MNR (No. 2020007) and the National Natural Science Foundation of China (No. 32072329) . Two anonymous reviewers are thanked for constructive suggestions that improved the manuscript greatly.	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J	Kim, JH; Ajani, PA; Murray, SA; Kang, SM; Kim, SH; Lim, HC; Teng, ST; Lim, PT; Park, BS				Kim, Jin Ho; Ajani, Penelope A.; Murray, Shauna A.; Kang, Su-Min; Kim, Sae-Hee; Lim, Hong Chang; Teng, Sing Tung; Lim, Po Teen; Park, Bum Soo			Abiotic and biotic factors controlling sexual reproduction in populations of Pseudo-nitzschia pungens (Bacillariophyceae)	HARMFUL ALGAE			English	Article						Pseudo-nitzschia pungens; Sexual reproduction; Mating rate; Potential cell activity	DINOFLAGELLATE GONYAULAX-TAMARENSIS; SIZE-REDUCTION; DOMOIC ACID; PERIDINIUM-CINCTUM; CYST FORMATION; LIFE-CYCLE; CELL-SIZE; DIATOM; ENCYSTMENT; GROWTH	Pseudo-nitzschia pungens is a widely distributed marine pennate diatom. Hybrid zones, regions in which two different genotypes may interbreed, are important areas for speciation and ecology, and have been reported across the globe for this species. However, sexual reproduction between differing clades in the natural envi-ronment is yet to be observed and is difficult to predict. Here we carried out experiments using two mono-clonal cultures of P. pungens from different genotypes to measure the frequency and timing of sexual reproduction across varying biotic (growth phases and cell activity potential) and abiotic conditions (nutrients, light, turbu-lence). We found the mating rates and number of zygotes gradually decreased from exponential to late stationary growth phases. The maximum zygote abundance observed was 1,390 cells mL-1 and the maximum mating rate was 7.1%, both which occurred during the exponential growth phase. Conversely, only 9 cells mL-1 and a maximum mating rate of 0.1% was observed during the late stationary phase. We also found the higher the relative potential cell activity (rPCA) in parent cells, as determined by the concentration of chlorophyll a per cell and the ratio of colony formation during parent cultivations, revealed higher mating rates. Furthermore, sexual events were reduced under nutrient enrichment conditions, and mating pairs and zygotes were not formed under aphotic (dark) or shaking culture conditions (150 rpm). In order to understand the sexual reproduction of Pseudo-nitzschia in the natural environment, our results highlight that it is most likely the combination of both biotic (growth phase, Chl. a content) and abiotic factors (nutrients, light, turbulence) that will determine the successful union of intraspecific populations of P. pungens in any given region.	[Kim, Jin Ho; Kang, Su-Min] Jeju Natl Univ, Coll Ocean Sci, Dept Earth & Marine Sci, Jeju 63243, South Korea; [Kim, Jin Ho; Ajani, Penelope A.; Murray, Shauna A.] Univ Technol Sydney, Sch Life Sci, POB 123, Sydney, NSW 2007, Australia; [Kim, Sae-Hee; Park, Bum Soo] Hanyang Univ, Coll Nat Sci, Dept Life Sci, Seoul 04763, South Korea; [Lim, Hong Chang] Tunku Abdul Rahman Univ Coll, Dept Appl Sci, Johor Branch Campus, Johor Baharu 53300, Malaysia; [Teng, Sing Tung] Univ Malaysia Sarawak, Fac Res Sci & Technol, Kota Samarahan 94300, Malaysia; [Lim, Po Teen] Univ Malaya, Inst Ocean & Earth Sci, Bachok Marine Res Stn, Bachok 16310, Kelantan, Malaysia; [Park, Bum Soo] Hanyang Univ, Hanyang Inst Biosci & Biotechnol, Seoul 04763, South Korea; [Park, Bum Soo] Hanyang Univ, Res Inst Nat Sci, Seoul 04763, South Korea	Jeju National University; University of Technology Sydney; Hanyang University; Tunku Abdul Rahman University College (TAR UC); University of Malaysia Sarawak; Universiti Malaya; Hanyang University; Hanyang University	Kim, JH (通讯作者)，Jeju Natl Univ, Coll Ocean Sci, Dept Earth & Marine Sci, Jeju 63243, South Korea.; Kim, JH (通讯作者)，Univ Technol Sydney, Sch Life Sci, POB 123, Sydney, NSW 2007, Australia.; Park, BS (通讯作者)，Hanyang Univ, Coll Nat Sci, Dept Life Sci, Seoul 04763, South Korea.; Park, BS (通讯作者)，Hanyang Univ, Hanyang Inst Biosci & Biotechnol, Seoul 04763, South Korea.; Park, BS (通讯作者)，Hanyang Univ, Res Inst Nat Sci, Seoul 04763, South Korea.	diatomist.jin@gmail.com; parkbs@hanyang.ac.kr	Lim, Hong/J-8761-2012; Teng, SingTung/E-8281-2015; Murray, Shauna/JAN-6668-2023; Ajani, Penelope/K-9987-2019; Lim, Po Teen/C-9758-2013; Murray, Shauna A/K-5781-2015; PARK, Bum Soo/W-3178-2017	Ajani, Penelope/0000-0001-5364-9936; Lim, Po Teen/0000-0003-2823-0564; Murray, Shauna A/0000-0001-7096-1307; PARK, Bum Soo/0000-0002-5441-6779	Basic Science Research Program to Research Institute for Basic Sciences (RIBS) of Jeju National University through the National Research Foundation of Korea (NRF) - Ministry of Education [2019R1A6A1A10072987]; National Research Foundation of Korea (NRF) - Korea Gov- ernment (MSIT) [2022R1C1C1003582]; Research Fund of Hanyang University [HY-202200000003109]	Basic Science Research Program to Research Institute for Basic Sciences (RIBS) of Jeju National University through the National Research Foundation of Korea (NRF) - Ministry of Education(Ministry of Education (MOE), Republic of KoreaNational Research Foundation of Korea); National Research Foundation of Korea (NRF) - Korea Gov- ernment (MSIT)(National Research Foundation of KoreaMinistry of Science, ICT & Future Planning, Republic of KoreaMinistry of Science & ICT (MSIT), Republic of Korea); Research Fund of Hanyang University	This research was supported by Basic Science Research Program to Research Institute for Basic Sciences (RIBS) of Jeju National University through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2019R1A6A1A10072987) , the National Research Foundation of Korea (NRF) grant funded by the Korea Gov- ernment (MSIT) (No. 2022R1C1C1003582) , and the Research Fund of Hanyang University (HY-202200000003109) .	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J	Kwok, ACM; Chan, WS; Wong, JTY				Kwok, Alvin Chun Man; Chan, Wai Sun; Wong, Joseph Tin Yum			Dinoflagellate Amphiesmal Dynamics: Cell Wall Deposition with Ecdysis and Cellular Growth	MARINE DRUGS			English	Review						cell wall; harmful algal blooms; cyst; dinoflagellates; amphiesma; cellulose; zooxanthellae	SYMBIODINIUM-MICROADRIATICUM FREUDENTHAL; MARINE ARMORED DINOFLAGELLATE; RED TIDE DINOFLAGELLATE; FINE-STRUCTURE; GONYAULAX-POLYEDRA; THECAL PLATES; ELECTRON-MICROSCOPE; LIFE-CYCLE; LINGULODINIUM-POLYEDRUM; PERIDINIUM-TROCHOIDEUM	Dinoflagellates are a major aquatic protist group with amphiesma, multiple cortical membranous "cell wall" layers that contain large circum-cortical alveolar sacs (AVs). AVs undergo extensive remodeling during cell- and life-cycle transitions, including ecdysal cysts (ECs) and resting cysts that are important in some harmful algal bloom initiation-termination. AVs are large cortical vesicular compartments, within which are elaborate cellulosic thecal plates (CTPs), in thecate species, and the pellicular layer (PL). AV-CTPs provide cellular mechanical protection and are targets of vesicular transport that are replaced during EC-swarmer cell transition, or with increased deposition during the cellular growth cycle. AV-PL exhibits dynamical-replacement with vesicular trafficking that are orchestrated with amphiesmal chlortetracycline-labeled Ca2+ stores signaling, integrating cellular growth with different modes of cell division cycle/progression. We reviewed the dynamics of amphiesma during different cell division cycle modes and life cycle stages, and its multifaceted regulations, focusing on the regulatory and functional readouts, including the coral-zooxanthellae interactions.	[Kwok, Alvin Chun Man; Chan, Wai Sun; Wong, Joseph Tin Yum] Hong Kong Univ Sci & Technol, Div Life Sci, Clear Water Bay, Hong Kong, Peoples R China	Hong Kong University of Science & Technology	Kwok, ACM; Wong, JTY (通讯作者)，Hong Kong Univ Sci & Technol, Div Life Sci, Clear Water Bay, Hong Kong, Peoples R China.	alvink@ust.hk; botin@ust.hk		KWOK, Alvin, Chun Man/0000-0002-5611-4512				Abidi W, 2022, FEMS MICROBIOL REV, V46, DOI 10.1093/femsre/fuab051; ADAMICH M, 1976, PLANTA, V130, P1, DOI 10.1007/BF00390837; Aktan Y., 2008, Harmful Algae News, V36, P1; Alldredge AL, 1998, J PLANKTON RES, V20, P393, DOI 10.1093/plankt/20.3.393; ANDERSON DM, 1984, ACS SYM SER, V262, P125; Barott KL, 2015, P NATL ACAD SCI USA, V112, P607, DOI 10.1073/pnas.1413483112; BERDALET E, 1992, J PHYCOL, V28, P267, DOI 10.1111/j.0022-3646.1992.00267.x; Berdalet E., 1991, TOXIC PHYTOPLANKTON, V3, P737; Berdieva Mariia, 2019, Protistology, V13, P57, DOI 10.21685/1680-0826-2019-13-2-2; Bibby B.T., 1972, British phycol J, V7, P85; Biquand E, 2017, ISME J, V11, P1702, DOI 10.1038/ismej.2017.17; BLACKBURN SI, 1989, J PHYCOL, V25, P577, DOI 10.1111/j.1529-8817.1989.tb00264.x; Blossom HE, 2012, HARMFUL ALGAE, V17, P40, DOI 10.1016/j.hal.2012.02.010; Bogus K, 2014, J PHYCOL, V50, P254, DOI 10.1111/jpy.12170; Bravo Isabel, 2014, Microorganisms, V2, P11; Bravo I, 2010, DEEP-SEA RES PT II, V57, P166, DOI 10.1016/j.dsr2.2009.09.003; Brett CL, 2005, MOL BIOL CELL, V16, P1396, DOI 10.1091/mbc.E04-11-0999; BRICHEUX G, 1992, PROTOPLASMA, V168, P159, DOI 10.1007/BF01666262; Buhmann MT, 2016, J PHYCOL, V52, P463, DOI 10.1111/jpy.12409; Calado AJ, 1999, EUR J PHYCOL, V34, P179, DOI 10.1080/09670269910001736232; CARNELL L, 1994, J CELL BIOL, V127, P693, DOI 10.1083/jcb.127.3.693; Castillo-Medina RE, 2011, LIMNOL OCEANOGR-METH, V9, P460, DOI 10.4319/lom.2011.9.460; Cavalier-Smith T, 2004, EUR J PROTISTOL, V40, P185, DOI 10.1016/j.ejop.2004.01.002; CAVALIERSMITH T, 1991, SYST ASSOC SPEC VOL, V45, P113; Chan WS, 2019, FRONT MICROBIOL, V10, DOI 10.3389/fmicb.2019.00546; CHANAT E, 1991, J CELL BIOL, V115, P1505, DOI 10.1083/jcb.115.6.1505; CHANDLER DE, 1978, J CELL BIOL, V76, P371, DOI 10.1083/jcb.76.2.371; Chen HK, 2015, PLOS ONE, V10, DOI 10.1371/journal.pone.0132519; Cho T, 2017, GENES CELLS, V22, P94, DOI 10.1111/gtc.12458; DEANE EM, 1978, BRIT PHYCOL J, V13, P189, DOI 10.1080/00071617800650241; Deng YY, 2017, FRONT MICROBIOL, V8, DOI 10.3389/fmicb.2017.02450; DODGE J D, 1970, Botanical Journal of the Linnean Society, V63, P53, DOI 10.1111/j.1095-8339.1970.tb02302.x; Dodge J. 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Drugs	FEB	2023	21	2							70	10.3390/md21020070	http://dx.doi.org/10.3390/md21020070			26	Chemistry, Medicinal; Pharmacology & Pharmacy	Science Citation Index Expanded (SCI-EXPANDED)	Pharmacology & Pharmacy	9K3QN	36827111	gold, Green Published			2025-03-11	WOS:000940785800001
J	Liu, XH; Liu, YY; Chai, ZY; Hu, ZX; Tang, YZ				Liu, Xiaohan; Liu, Yuyang; Chai, Zhaoyang; Hu, Zhangxi; Tang, Ying Zhong			A combined approach detected novel species diversity and distribution of dinoflagellate cysts in the Yellow Sea, China	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate resting cysts; Diversity; Distribution pattern; Yellow Sea Cold Water Mass (YSCWM); Metabarcoding; Single-cyst morpho-molecular identification	HARMFUL ALGAL BLOOMS; SURFACE SEDIMENTS; ALEXANDRIUM DINOPHYCEAE; GYMNODINIUM-CATENATUM; PHYSICAL PROCESSES; NOV DINOPHYCEAE; BALLAST WATER; RESTING CYSTS; PHYTOPLANKTON; MORPHOLOGY	Resting cysts of dinoflagellates seed harmful algal blooms (HABs) and their geographic expansion, which makes it fundamentally important to obtain comprehensive inventories of dinoflagellate resting cysts in HABs-prone regions. The Yellow Sea (YS) of China has observed numerous outbreaks of dinoflagellate HABs with some novel species recorded recently indicating an underestimated HABs-causing species diversity. We report our investigation of dinoflagellate cysts of YS via an approach combining metabarcoding sequencing and single-cyst morpho-molecular identification, which identified many novel cyst species and a significant controlling effect of the Yellow Sea Cold Water Mass on cyst composition. The metabarcoding and single cyst-based sequencing detected 11 cyst species never being unambiguously reported in China, 10 never reported as cyst producers, and 3 HABs-causing species never reported from YS. Our detections of many potentially toxic or HABs-causative, particularly novel, cysts and distribution pattern provide important insights into the risks and ecology of dinoflagellate HABs.	[Liu, Xiaohan; Liu, Yuyang; Chai, Zhaoyang; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, CAS Key Lab Marine Ecol & Environm Sci, Inst Oceanol, Qingdao 266071, Peoples R China; [Liu, Yuyang; Chai, Zhaoyang; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Liu, Yuyang; Chai, Zhaoyang; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Liu, Xiaohan] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Peoples R China; [Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Institute of Oceanology, CAS	Hu, ZX; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Peoples R China.	huzx@gdou.edu.cn; yingzhong.tang@qdio.ac.cn	Li, Yang/KFB-5350-2024; Chai, Zhaoyang/F-7485-2017; ZHANG, hui jie/HTN-1690-2023		Science & Technology Basic Resources Investigation Program of China [2018FY100200]; Science and Technology Innovation Project of Laoshan Laboratory [LSKJ202203700]; National Science Foundation of China [42106199, 41976134]	Science & Technology Basic Resources Investigation Program of China; Science and Technology Innovation Project of Laoshan Laboratory; National Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was financially supported by the Science & Technology Basic Resources Investigation Program of China (2018FY100200) , the Science and Technology Innovation Project of Laoshan Laboratory (LSKJ202203700) , and the National Science Foundation of China (No. 42106199, 41976134) .	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FEB	2023	187								114567	10.1016/j.marpolbul.2022.114567	http://dx.doi.org/10.1016/j.marpolbul.2022.114567		JAN 2023	16	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	8K5LF	36640495				2025-03-11	WOS:000923142400001
J	Gao, JF; Su, Q				Gao, Junfeng; Su, Qiang			The relationship between inorganic nutrients and diversity of dinoflagellate cysts: An evaluation from the perspective of species abundance distribution	FRONTIERS IN MARINE SCIENCE			English	Article						dinoflagellate cysts; inorganic nutrients; coastal ecosystem; species abundance distribution; fractal model; Zipf's law	PLANT DIVERSITY; MARINE; PHYTOPLANKTON; SEDIMENTS; NITROGEN; EUTROPHICATION; ESTUARIES; PATTERNS; INDEXES; BAY	The relationships between the inorganic nutrients and diversity of dinoflagellate cysts (the N-Dc relationships) are one of the most central issues in coastal ecology. It is not only an important pathway to explore the ecological processes of plankton, but also a key element for assessing eutrophication in marine ecosystems. Although the N-Dc relationships have been studied for many years, they have remained controversial, which may be attributed to (1) using samples collected from a single source (2) considering an insufficient range of nutrient concentrations (3) rarely taking into account species abundance distributions (SAD) that could better represent diversity. In this study, the N-Dc relationships are evaluated according to a compiled dataset, which cover the wide range of nutrient concentrations. Species diversity of cysts are estimated by four common diversity metrics and a new SAD parameter. Results show that all diversity metrics are negative with nutrients, which supports that low diversity of cysts could be considered as a signal of eutrophication. Additionally, this study finds a new pattern that SAD of cysts (N-r/N-1, N-r and N-1 is the abundance of the r-th and the first species in descending order) with decreasing nutrients appears to gradually approach 1: 1/2: 1/3 horizontal ellipsis . In the future, if this pattern can be verified by more investigations, understanding the negative N-Dc relationships is more likely to provide new direction for assessing and managing eutrophication in coastal ecosystem, and even for exploring the general mechanisms determining diversity.	[Gao, Junfeng; Su, Qiang] Univ Chinese Acad Sci UCAS, Coll Earth & Planetary Sci CEPS, Beijing, Peoples R China		Su, Q (通讯作者)，Univ Chinese Acad Sci UCAS, Coll Earth & Planetary Sci CEPS, Beijing, Peoples R China.	sqiang@ucas.ac.cn	Su, Qiang/H-3616-2017; Gao, Junfeng/JDV-8786-2023	Gao, Junfeng/0000-0003-3334-3555	National Natural Science Foundation of China [42071137, 41676113]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	Funding This work was supported by the National Natural Science Foundation of China (Grant Nos. 42071137 and 41676113). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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Mar. Sci.	JAN 12	2023	9								1089331	10.3389/fmars.2022.1089331	http://dx.doi.org/10.3389/fmars.2022.1089331			9	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	8D6RT		gold			2025-03-11	WOS:000918418800001
J	Pires, E; Lana, PD; Mafra, LL Jr				Pires, Estela; Lana, Paulo da Cunha; Mafra Jr, Luiz Laureno			Phycotoxins and marine annelids - A global review	HARMFUL ALGAE			English	Review						Marine annelids; Algal toxins; Benthic dinoflagellates; Biomonitoring; Ecotoxicology; Biotoxins	ENCHYTRAEUS-CRYPTICUS ANNELIDA; OKADAIC ACID ACCUMULATION; HARMFUL ALGAL BLOOMS; RED-TIDE TOXINS; DOMOIC ACID; ANTIOXIDANT RESPONSES; VEGETATIVE CELLS; SHELLFISH TOXINS; PSEUDO-NITZSCHIA; RESTING CYSTS	Several species of microalgae can produce potent phycotoxins that negatively affect aquatic organisms and their consumers following different exposure routes, as well as toxicokinetic (TK) and toxicodynamic (TD) processes. Benthic organisms are especially vulnerable as they are exposed to both benthic and planktonic species causative of harmful algal blooms (HABs). While benthic algae can come into direct contact with annelids during substrate remobilization, planktonic cells can settle to the bottom mostly during senescence and/or encystment stages, and in shallow and calm waters. We performed a systematic, qualitative review of the literature on the phycotoxin TK and TD processes in marine annelids, summarizing the most relevant findings and general trends. Besides, by using innovative analytical/statistical approaches, we were able to detect patterns and gaps in the current literature, thus pointing to future research directions. We retrieved and analyzed studies involving diarrhetic shellfish toxins (DSTs), paralytic shellfish toxins (PSTs), brevetoxins (PbTXs), domoic acid (DA), as well as palytoxin and its congeners, the ovatoxins (treated together as PLTXs). It is worth mentioning that studies evaluating other phycotoxins (e.g., ciguatoxins, yessotoxins) were not found in the literature. The absence of data on PbTXs, PSTs and DA is the largest gap hampering TK assessment in annelids, although some relevant information on TD is already available. Whereas lethal effects from DSTs have not been reported, more potent toxins like PbTXs, PSTs, DA and those grouped as PLTX-like compounds can cause mortality and/or marked decrease in annelid abundance. In addition, phycotoxins have been linked to sublethal effects on annelid cells. Although very sparse, field and laboratory studies offer strong evidence that annelids may be reliable indicators of toxin exposure and their negative effects during both early and later stages of HABs in marine environments. Besides quickly responding to these compounds at both organismic and suborganismic levels, annelids are easily found in areas affected by HABs. The use of annelids in future investigations evaluating the action mechanisms of toxic microalgae on marine invertebrates should be thus encouraged. In this case, the choice for widely dispersed and numerically dominant species of annelids would strengthen the validation and extrapolation of results from risk assessments in areas affected by HABs worldwide.	[Pires, Estela; Lana, Paulo da Cunha; Mafra Jr, Luiz Laureno] Univ Fed Parana, Ctr Marine Studies, Ave Beira Mar S-N,POB 61, BR-83255976 Pontal do Parana, Parana, Brazil	Universidade Federal do Parana	Pires, E (通讯作者)，Univ Fed Parana, Ctr Marine Studies, Ave Beira Mar S-N,POB 61, BR-83255976 Pontal do Parana, Parana, Brazil.	estelapires@ufpr.br	Mafra, Luiz/J-6047-2012; Pires, Estela/KHE-4650-2024	Pires, Estela/0000-0003-2726-2070; Mafra, Luiz/0000-0001-5822-3619	CAPES (Brazil); International Atomic Energy Agency (IAEA) [18827]	CAPES (Brazil)(Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES)); International Atomic Energy Agency (IAEA)(International Atomic Energy Agency)	This work is heartfully dedicated to the memory of Paulo Lana, a brilliant scientist and our dearest friend. The authors would like to thank Pedro Wadt for the dinoflagellate art of graphic abstract. The authors are grateful to CAPES (Brazil) for the M.Sc. scholarship awarded to E.P. This study was partially supported by the International Atomic Energy Agency (IAEA) through the Research Contract #18827 ("Bentox" Project).	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J	Holen, DA; Princiotta, S				Holen, Dale A.; Princiotta, Sarah			Encystment by the mixotrophic flagellate<i> Ochromonas</i><i> pinguis</i> Conrad (Chrysophyceae) under manipulated laboratory conditions	FOTTEA			English	Article						chrysophyte; cyst; dormancy; encystment; mixotrophy; Ochromonas; resting stage; stomatocyst	LIFE-CYCLE; DINOFLAGELLATE; STATOSPORE; STOMATOCYSTS; TEMPERATURE; POPULATION; PATTERNS; CULTURE; GROWTH; CYSTS	Chrysophyte stomatocysts are well documented in lake sediments, but except for a few studies on sexually reproducing colonial chrysophytes, little is known regarding encystment cues in these algae. Ochromonas pinguis Conrad, a mixotrophic chrysophyte with an unknown sexual history was observed to produce stomatocysts, albeit at a low frequency. To determine if the low rate of encystment was typical or whether manipulating environmental conditions might enhance the rate of resting cyst production O. pinguis was subjected to various physical and chemical conditions in a batch culture. O. pinguis cultures were manipulated by culturing them in DY-V inorganic medium in variable light, pH, and temperature conditions, and at varying levels of N and P limitation. Except for growth in continuous darkness, all treatments resulted in an increase in O. pinguis concentration. Five treatments resulted in a corresponding increase in stomatocyst concentration. In the remaining treatments stomatocyst production was steady although sporadic. The encystment frequency however was minimal in all manipulations and ranged from 0.008 to 0.03% of the population undergoing cyst formation. In this study, O. pinguis stomatocyst production was not influenced by laboratory manipulations but rather a minute proportion of the population produced stomatocysts regardless of environmental conditions.	[Holen, Dale A.] Penn State Univ Scranton, 120 Ridge View Dr, Dunmore, PA 18512 USA; [Princiotta, Sarah] Penn State Univ Schuylkill, 200 Univ Dr, Schuylkill Haven, PA 17972 USA	Pennsylvania Commonwealth System of Higher Education (PCSHE); Pennsylvania State University; Pennsylvania Commonwealth System of Higher Education (PCSHE); Pennsylvania State University	Holen, DA (通讯作者)，Penn State Univ Scranton, 120 Ridge View Dr, Dunmore, PA 18512 USA.	dah13@psu.edu	Holen, Dale/KFA-6039-2024					AGBETI MD, 1995, J PHYCOL, V31, P70, DOI 10.1111/j.0022-3646.1995.00070.x; ALBERTANO P, 1994, ARCH PROTISTENKD, V144, P75, DOI 10.1016/S0003-9365(11)80226-5; Andersen R. A., 2005, Algal Culturing Techniques; ANDERSEN R.A., 2007, Unravelling the algae. 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J	Rukminasari, N; Hidayani, AA; Parenrengi, A; Andriyono, S				Rukminasari, Nita; Hidayani, Andi Aliah; Parenrengi, Andi; Andriyono, Sapto			Detecting DNA of multispecies dinoflagellate cysts in the sediment from three estuaries of Makassar strait and fishing port using CO1 primer: Is it CO1 primer suitable for detecting DNA dinoflagellate?	BAGHDAD SCIENCE JOURNAL			English	Article						CO1 primer; DNA dinoflagellate cyst; Makassar Strait; Maros-Pangkep and Jeneberang Estuary; PCR method	LIFE-CYCLE; QPCR ASSAY; WATERS; GENE; ORGANIZATION; ALEXANDRIUM; PCR	Most dinoflagellate had a resting cyst in their life cycle. This cyst was developed in unfavorable environmental condition. The conventional method for identifying dinoflagellate cyst in natural sediment requires morphological observation, isolating, germinating and cultivating the cysts. PCR is a highly sensitive method for detecting dinoflagellate cyst in the sediment. The aim of this study is to examine whether CO1 primer could detect DNA of multispecies dinoflagellate cysts in the sediment from our sampling sites. Dinoflagellate cyst DNA was extracted from 16 sediment samples. PCR method using COI primer was running. The sequencing of dinoflagellate cyst DNA was using BLAST. Results showed that there were two clades of dinoflagellate cysts from four locations of study. Clade 1 was dominated by samples from the Jeneberang Estuary (JB), Maros Estuary (M) and Pangkep Estuary(P), while clade 2 was dominated by samples from the Paotere Port (PP). The genetic distance varied between DNA dinoflagellate cyst samples ranging from 0.5-0.6. The closest genetic distance was between sample of JB1 and sample of JB2, while the farthest genetic distance was sample PP1 and PP2. The primer CO1 was not suitable for dinoflagellate cyst DNA due to only picking one DNA, which was a diatom (Licmophora sp).	[Rukminasari, Nita; Hidayani, Andi Aliah] Univ Hasanuddin, Fac Marine Sci & Fisheries, Fisheries Dept, Makassar, South Sulawesi, Indonesia; [Parenrengi, Andi] Natl Res & Innovat Agcy, Res Ctr Fisheries, Central Jakarta, Indonesia; [Andriyono, Sapto] Univ Airlangga, Fac Fisheries & Marine, Dept Marine, East Java, Indonesia	Universitas Hasanuddin; Airlangga University	Rukminasari, N (通讯作者)，Univ Hasanuddin, Fac Marine Sci & Fisheries, Fisheries Dept, Makassar, South Sulawesi, Indonesia.	nita.r@unhas.ac.id; aliah@fikp.unhas.ac.id; andi053@brin.go.id; sapto.andriyono@fpk.unair.ac.id	Andriyono, Sapto/AAB-7229-2021; Parenrengi, Andi/JQV-5411-2023; Hidayani, Andi Aliah/H-8117-2017; Rukminasari, Nita/M-2410-2014	Parenrengi, Andi/0000-0002-2802-8617; Hidayani, Andi Aliah/0000-0002-4541-5539; Andriyono, Sapto/0000-0002-2566-1636; Rukminasari, Nita/0000-0003-2943-9538				Brosnahan ML, 2014, DEEP-SEA RES PT II, V103, P185, DOI 10.1016/j.dsr2.2013.05.034; Casabianca S, 2014, MAR POLLUT BULL, V88, P102, DOI 10.1016/j.marpolbul.2014.09.018; Casabianca S, 2013, ENVIRON SCI TECHNOL, V47, P3788, DOI 10.1021/es305018s; de Bustos A, 2020, HARMFUL ALGAE, V98, DOI 10.1016/j.hal.2020.101903; de la Espina SMD, 2005, EUR J CELL BIOL, V84, P137, DOI 10.1016/j.ejcb.2005.01.002; Deng YY, 2015, HARMFUL ALGAE, V50, P57, DOI 10.1016/j.hal.2015.10.007; Dias PJ, 2015, BIOINVASIONS REC, V4, P233, DOI 10.3391/bir.2015.4.4.01; Eckford-Soper LK, 2015, HARMFUL ALGAE, V48, P37, DOI 10.1016/j.hal.2015.06.009; Hidayani Andi Aliah, 2020, Biodiversitas, V21, P2097; Hoppenrath M, 2020, J PHYCOL, V56, P798, DOI 10.1111/jpy.12984; Figueroa RI, 2014, PROTIST, V165, P343, DOI 10.1016/j.protis.2014.04.001; Ishitani Y, 2014, MOL PHYLOGENET EVOL, V78, P215, DOI 10.1016/j.ympev.2014.05.021; Khalil MI, 2020, BAGHDAD SCI J, V17, P220, DOI 10.21123/bsj.2020.17.1(Suppl.).0220; Kim JH, 2016, PLOS ONE, V11, DOI 10.1371/journal.pone.0146843; Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]; Lai JCY, 2010, RAFFLES B ZOOL, V58, P199; Mertens KN, 2012, PHYCOLOGIA, V51, P612, DOI 10.2216/11-89.1; Mohammed HA, 2018, BAGHDAD SCI J, V15, P381, DOI 10.21123/bsj.2018.15.4.0381; Park BS, 2014, HARMFUL ALGAE, V37, P133, DOI 10.1016/j.hal.2014.04.019; Park TG, 2016, HARMFUL ALGAE, V60, P36, DOI 10.1016/j.hal.2016.10.005; Pawlowski J, 2012, PLOS BIOL, V10, DOI 10.1371/journal.pbio.1001419; Perini F, 2011, PLOS ONE, V6, DOI 10.1371/journal.pone.0017699; Rachman Arief, 2021, Oseanologi dan Limnologi di Indonesia, V6, P37; Reñé A, 2013, PROTIST, V164, P673, DOI 10.1016/j.protis.2013.07.002; Rukminasari Nita, 2021, AACL Bioflux, V14, P1107; Tambaru R, 2019, J Ilmu Kelaut Spermonde, V4, P69; Yamaguchi A, 2006, PHYCOL RES, V54, P317, DOI 10.1111/j.1440-1835.2006.00438.x	27	0	0	1	2	COLL SCIENCE WOMEN, UNIV BAGHDAD	BAGHDAD	PO BOX 4732, AL- JADIRYA, BAGHDAD, 00000, IRAQ	2078-8665	2411-7986		BAGHDAD SCI J	Baghdad Sci. J.		2023	20	5					1635	1642		10.21123/bsj.2023.7181	http://dx.doi.org/10.21123/bsj.2023.7181			8	Multidisciplinary Sciences	Emerging Sources Citation Index (ESCI)	Science & Technology - Other Topics	U9SL2		gold			2025-03-11	WOS:001088130900001
J	Hansen, G; Daugbjerg, N; Moestrup, O				Hansen, Gert; Daugbjerg, Niels; Moestrup, Ojvind			<i>Baldinia droopii sp. nov</i>. (Suessiales, Dinophyceae), a new species from a small rainwater rock pool near Tvarminne, south-western Finland	PHYCOLOGIA			English	Article						Circadian rhythm; Cyst; Life cycle; LSU rDNA; Sexual reproduction	ALEXANDRIUM-TAYLORI DINOPHYCEAE; LAKE TOVEL; LIFE-CYCLE; WATER DINOFLAGELLATE; COMB. NOV; ULTRASTRUCTURE; GEN.; PHYLOGENY; MORPHOLOGY; SYMBIODINIUM	A dinoflagellate isolated from a small rainwater rockpool in Finland was found to be a new species of Baldinia, here described as B. droopii sp. nov. This is only the third formally described Baldinia species and the second described by modern methods. The new species had a complement of generic characters that clearly affiliated it to Baldinia: presence of an internal honeycomb structure, termed a lamellar body, a ventral fibre associated with the longitudinal basal body and a pentagonal resting cyst; and the absence of an apical structure, thecal plates and trichocysts. The most distinctive species-specific characters were the presence of a resting cyst with tubiform processes, a paratabulation matching the pattern of the motile cell, and a life cycle exhibiting a diel rhythm, alternating between motile and non-motile coccoid cells. Motile cells occurred during the light period, peaking after 3-4 h of light period, while practically no motile cells occurred during the dark period. LSU rDNA sequences confirmed B. droopii as a new species, showing c. 14% sequence difference compared to B. anauniensis. Asexual reproduction occurred primarily by binary fission or via a so-called division cyst. Sexual reproduction occurred in the culture indicating that D. droopii is homothallic. The zygote may form a resistant cyst with tubiform processes, but there were indications that this stage may be by-passed. Different stages of the asexual and putative sexual reproduction were observed and documented by video recordings.	[Hansen, Gert; Daugbjerg, Niels; Moestrup, Ojvind] Univ Copenhagen, Dept Biol, Marine Biol Sect, Univ Pk 4, DK-2100 Copenhagen, Denmark	University of Copenhagen	Hansen, G (通讯作者)，Univ Copenhagen, Dept Biol, Marine Biol Sect, Univ Pk 4, DK-2100 Copenhagen, Denmark.	gerth@bio.ku.dk	Daugbjerg, Niels/D-3521-2014	Daugbjerg, Niels/0000-0002-0397-3073				Anderson D.M., 1995, MANUAL HARMFUL MARIN, V33, P229; Baldi E., 1938, Studi Trentini Trento, V19, P247; Baldi E., 1941, Memorie del Museo di Storia Naturale della Venezia Tridentina, V6, P1; Balech E., 1974, Revista Mus argent Cienc nat Bernardino Rivadavia Inst nac Invest Cienc nac (Hydrobiol), V4, P1; Biecheler B., 1952, Bull. Biol. Fr. Belg., V36, P1; Borghi B., 2006, STUDI TRENTINI SC NA, V81, P476; CHODAT R., 1924, Bull. Soc. Bot. 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Trench Trench], 1987, BIOL DINOFLAGELLATES, P530; Uchida Takuji, 1996, Phycological Research, V44, P119, DOI 10.1111/j.1440-1835.1996.tb00040.x; Waterhouse AM, 2009, BIOINFORMATICS, V25, P1189, DOI 10.1093/bioinformatics/btp033; WILLIAMS G.L., 1978, AM ASS STRATIGRAPHIC, V2A, P1; Yacobovitch T, 2004, J EXP MAR BIOL ECOL, V298, P35, DOI 10.1016/j.jembe.2003.08.003	69	2	2	0	7	TAYLOR & FRANCIS LTD	ABINGDON	2-4 PARK SQUARE, MILTON PARK, ABINGDON OR14 4RN, OXON, ENGLAND	0031-8884	2330-2968		PHYCOLOGIA	Phycologia	JAN 2	2023	62	1					68	82		10.1080/00318884.2022.2142430	http://dx.doi.org/10.1080/00318884.2022.2142430		DEC 2022	15	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	9X9YJ					2025-03-11	WOS:000897922400001
J	Mertens, KN; Morquecho, L; Carbonell-Moore, C; Meyvisch, P; Gu, HF; Bilien, G; Duval, A; Derrien, A; Pospelova, V; Sliwinska, KK; Gárate-Lizárraga, I; Pérez-Cruz, B				Mertens, Kenneth Neil; Morquecho, Lourdes; Carbonell-Moore, Consuelo; Meyvisch, Pjotr; Gu, Haifeng; Bilien, Gwenael; Duval, Audrey; Derrien, Amelie; Pospelova, Vera; Sliwinska, Kasia K.; Garate-Lizarraga, Ismael; Perez-Cruz, Beatriz			<i>Pentaplacodinium</i><i> lapazense</i> sp. nov. from Central and Southern Gulf of California, a new non-toxic gonyaulacalean resembling Protoceratium reticulatum	MARINE MICROPALEONTOLOGY			English	Article						Operculodinium; Yessotoxins; BahiaConcepcion; Bahia de La Paz; micro-FTIR spectroscopy	ROYAL-SOCIETY BOREHOLE; DINOFLAGELLATE CYSTS; BAHIA CONCEPCION; SURFACE SEDIMENTS; LA-PAZ; BENTHIC DINOFLAGELLATE; PLANKTONIC DIATOMS; DINOPHYCEAE; PHYTOPLANKTON; PERIDINIALES	A new Pentaplacodinium species with six precingular plates is described from Bahia Concepci ' on and Bahia de la Paz, Gulf of California. The non-fossil motile stage is described as Pentaplacodinium lapazense, whilst the fossil stage is described as Operculodinium lapazense. The cyst morphology is compared to topotype material of Oper-culodinium israelianum, which is larger, has longer processes and has a different wall structure. The motile cells display a plate formula of Po, Pt, X, 2 '+*2 ', 6 '', 6c, 7s, 5 ''', 1p, 1 ''''. A typical gonyaulacalean fission line and plate overlap are observed. SSU-ITS-LSU ribosomal DNA sequences demonstrate that Pentaplacodinium saltonense is its closest relative. The species is homothallic. This species occurs in relatively shallow and restricted coastal areas, and has a preference for higher sea-surface temperatures and salinities. Micro-FTIR spectra of the cysts are compared to spectra of cysts of other gonyaulacaleans and suggest very similar compositions. No yessotoxins were detected in any of the analyzed strains, hence, this species is unlikely to be responsible for the elevated yessotoxin concentration observed in shellfish on the southern and central coastal region of the Gulf of California.	[Mertens, Kenneth Neil; Bilien, Gwenael; Duval, Audrey; Derrien, Amelie] IFREMER, LITTORAL, F-29900 Concarneau, France; [Morquecho, Lourdes] Ctr Invest Biol Noroeste CIBNOR, Playa Palo Santa Rita Sur, Av IPN 195, La Paz 23096, Baja California, Mexico; [Carbonell-Moore, Consuelo] Oregon State Univ, Coll Agr Sci, Dept Bot & Plant Pathol, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Meyvisch, Pjotr] Univ Ghent, Dept Geol, Krijgslaan 281, B-9000 Ghent, Belgium; [Gu, Haifeng] Minist Nat Resources, Dept Marine Biol & Ecol, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, 116 Church St SE, Minneapolis, MN 55455 USA; [Sliwinska, Kasia K.] Geol Survey Denmark & Greenland, GEUS, Dept Geoenergy & Storage, Oster Voldgade 10, DK-1350 Copenhagen K, Denmark; [Garate-Lizarraga, Ismael] Ctr Interdisciplinario Ciencias Marinas, Inst Politecn Nacl, Playa Palo Santa Rita, Av IPN S-N, La Paz, Baja California, Mexico; [Perez-Cruz, Beatriz] Lab Estatal Salud PablicaDr Gale Soberon & Parra, Blvd Vicente Guerrero,Esq Juan R Escudero S-N, Acapulco, Guerrero, Mexico	Ifremer; CIBNOR - Centro de Investigaciones Biologicas del Noroeste; Oregon State University; Ghent University; Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; University of Minnesota System; University of Minnesota Twin Cities; Geological Survey Of Denmark & Greenland; Instituto Politecnico Nacional - Mexico	Mertens, KN (通讯作者)，IFREMER, LITTORAL, F-29900 Concarneau, France.	kenneth.mertens@ifremer.fr; lamorquecho@cibnor.mx; carbonem@oregonstate.edu; Pjotr.Meyvisch@UGent.be; guhaifeng@tio.org.cn; vpospe@umn.edu; kksl@geus.dk	Morquecho, Lourdes/JPY-0626-2023; Mertens, Kenneth/AAO-9566-2020; Meyvisch, Pjotr/ABB-1527-2021; Mertens, Kenneth/C-3386-2015; Sliwinska, Kasia K./G-9097-2018; Gu, Haifeng/ADN-4528-2022	Morquecho, Lourdes/0000-0003-2963-8836; Meyvisch, Pjotr/0000-0002-1270-2152; Mertens, Kenneth/0000-0003-2005-9483; Sliwinska, Kasia K./0000-0001-5488-8832; Pospelova, Vera/0000-0003-4049-8133; Derrien, Amelie/0000-0001-9656-7850; Gu, Haifeng/0000-0002-2350-9171	Regional Council of Brittany; CIBNOR project [SIP-20220515]; General Council of Finistere; urban community of Concarneau-Cornouaille-Agglomeration; CONACYT; Instituto Politecnico Nacional, Mexico; IGL;  [20449];  [A1-S-37026];  [SIP-20180551]	Regional Council of Brittany(Region Bretagne); CIBNOR project; General Council of Finistere(Region Bretagne); urban community of Concarneau-Cornouaille-Agglomeration; CONACYT(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); Instituto Politecnico Nacional, Mexico; IGL; ; ; 	The Regional Council of Brittany, the General Council of Finistere and the urban community of Concarneau-Cornouaille-Agglomeration are acknowledged for the funding of the Sigma 300 FE-SEM of the station of Marine Biology in Concarneau. Oury Teboulle is gratefully acknowledged for help obtaining topotype material from the Geological Survey of Israel (GSI). This study was also supported by CIBNOR project 20449, and CONACYT A1-S-37026 grant. Amada Reyes-Salinas (CIB-NOR) provided technical assistance. Thelma Castellanos and Angel Carrillo (CIBNOR) provided technical advice and infrastructure of the Molecular Microbial Ecology Laboratory. The project was partially funded by Instituto Politecnico Nacional, Mexico (grants SIP-20180551 and SIP-20220515). IGL is a COFAA fellow. Two anonymous reviewers are acknowledged for comments that significantly improved the manuscript.	Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; Andersen R. 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Micropaleontol.	JAN	2023	178								102187	10.1016/j.marmicro.2022.102187	http://dx.doi.org/10.1016/j.marmicro.2022.102187		DEC 2022	22	Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Paleontology	7B4SB		Green Submitted, Bronze, Green Published			2025-03-11	WOS:000899123900001
J	Versteegh, GJM; Zonneveld, KAF				Versteegh, Gerard J. M.; Zonneveld, Karin A. F.			Micro-Fourier transform infrared spectroscopy of degradation-resistant organic microfossils; Influence of preservation environment and phylogeny	FRONTIERS IN MARINE SCIENCE			English	Article						micro-FTIR (Fourier transform infrared spectroscopy); dinoflagellate cyst; particulate organic matter (POM) preservation; redox environments; molecular characteristics	WALLED DINOFLAGELLATE CYSTS; AEROBIC DEGRADATION; RESTING CYSTS; MATTER; SEDIMENTS	To gain more insight into the effect of early diagenetic processes in different redox environments on the molecular characteristics of degradation resistant particulate organic matter, the molecular cyst wall characteristics of the closely related dinoflagellates Impagidinium aculeatum and I. patulum from oxic and anoxic sedimentary environments in the Madeira Abyssal Plain F-turbidite and in the surface sediments of the eastern Mediterranean Sea have been analysed with micro-FTIR spectroscopy. Both species have cysts that are representatives of particulate organic matter being extremely resistant against degradation in natural environments. Their walls primarily consist of a carbohydrate-based polymer. Spectral differences could not be observed between cysts from oxic and anoxic environments, neither from different areas nor from different geological times. However, we identify consistent compositional differences between both species. Compared to I. patulum, cyst walls of I. aculeatum contain more C-O probably of secondary alcohols that might imply a slightly higher resistance to decay of I. patulum. Comparison with cyst species that represent particular organic matter being extremely sensitive and slightly resistant against aerobic degradation in natural settings reveals that cysts walls of the most vulnerable species show C=N, N-H, N-O, C-N bending/stretching, as well as the presence of C=O and C-O bounds. Cyst species that are somewhat less sensitive have a strong indication of the presence of nitrogen in their macromolecules. More resistant species lack nitrogen whereas the most resistant cyst species I. aculeatum and I. patulum show low amounts of C=O.	[Versteegh, Gerard J. M.; Zonneveld, Karin A. F.] Univ Bremen, Ctr Marine Environm Sci, MARUM, Bremen, Germany; [Versteegh, Gerard J. M.] Helmholtz Zent Polar und Meeresforschung, Alfred Wegener Inst, Marine Geochem, Bremerhaven, Germany; [Versteegh, Gerard J. M.] Jacobs Univ Bremen, Dept Phys & Earth Sci, Bremen, Germany; [Zonneveld, Karin A. F.] Univ Bremen, Geosci Dept, Bremen, Germany	University of Bremen; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Jacobs University; University of Bremen	Zonneveld, KAF (通讯作者)，Univ Bremen, Ctr Marine Environm Sci, MARUM, Bremen, Germany.; Zonneveld, KAF (通讯作者)，Univ Bremen, Geosci Dept, Bremen, Germany.	kzonneveld@marum.de	Versteegh, Gerardus/H-2119-2011					Arndt S, 2013, EARTH-SCI REV, V123, P53, DOI 10.1016/j.earscirev.2013.02.008; Bernhard JM, 2015, BMC BIOL, V13, DOI 10.1186/s12915-015-0213-6; Blümel R, 2018, J OPT SOC AM A, V35, P1769, DOI 10.1364/JOSAA.35.001769; Bogus K, 2014, J PHYCOL, V50, P254, DOI 10.1111/jpy.12170; Bogus K, 2012, REV PALAEOBOT PALYNO, V183, P21, DOI 10.1016/j.revpalbo.2012.07.001; Canfield DE, 2009, GEOBIOLOGY, V7, P385, DOI 10.1111/j.1472-4669.2009.00214.x; Colthup N.B., 1990, Introduction to infrared and Raman spectroscopy, P1, DOI [10.1016/b978-0-08-091740-5.50004-1, DOI 10.1016/B978-0-08-091740-5.50004-1]; de Lange G.J., 1987, GEOL SOC LOND SPEC P, V31, P147, DOI 10.1144/GSL.SP.1987.031.01.12; Gray DD, 2017, REV PALAEOBOT PALYNO, V247, P175, DOI 10.1016/j.revpalbo.2017.09.002; Gurdebeke PR, 2021, PALYNOLOGY, V45, P103, DOI 10.1080/01916122.2020.1750500; Gurdebeke PR, 2018, PALYNOLOGY, V42, P93, DOI 10.1080/01916122.2018.1465735; Hammer Oyvind, 2001, Palaeontologia Electronica, V4, pUnpaginated; Hedges J.I., 1993, Organic Geochemistry; Jardine PE, 2017, REV PALAEOBOT PALYNO, V238, P1, DOI 10.1016/j.revpalbo.2016.11.014; Kasten S, 2004, SOUTH ATLANTIC IN THE LATE QUATERNARY: RECONSTRUCTION OF MATERIAL BUDGETS AND CURRENT SYSTEMS, P431; Kodrans-Nsiah M, 2008, REV PALAEOBOT PALYNO, V152, P32, DOI 10.1016/j.revpalbo.2008.04.002; Kokinos JP, 1998, ORG GEOCHEM, V28, P265, DOI 10.1016/S0146-6380(97)00134-4; Landry Z, 2017, MBIO, V8, DOI 10.1128/mBio.00413-17; MCCAVE IN, 1988, NATURE, V333, P250, DOI 10.1038/333250a0; Mertens KN, 2018, PALYNOLOGY, V42, P10, DOI 10.1080/01916122.2018.1465739; Mertens KN, 2017, J PHYCOL, V53, P1193, DOI 10.1111/jpy.12582; Mertens KN, 2017, PALYNOLOGY, V41, P183, DOI 10.1080/01916122.2016.1147219; Mertens KN, 2015, SYST BIODIVERS, V13, P829, DOI 10.1080/14772000.2015.1078855; Mertens KN, 2015, HARMFUL ALGAE, V42, P71, DOI 10.1016/j.hal.2014.12.002; Meyvisch P, 2022, APPL SPECTROSC, V76, P235, DOI 10.1177/00037028211041172; Middelburg JJ, 2018, BIOGEOSCIENCES, V15, P413, DOI 10.5194/bg-15-413-2018; Middelburg JJ, 2019, SPRINGERBR EARTH SYS, P1, DOI 10.1007/978-3-030-10822-9; Nierop KGJ, 2017, GEOCHIM COSMOCHIM AC, V206, P40, DOI 10.1016/j.gca.2017.02.032; Nunn S., 2008, ADV ATR CORRECTION A, V2008, P1; Polymenakou PN, 2007, GEOMICROBIOL J, V24, P19, DOI 10.1080/01490450601134283; Smilauer Petr., 2014, Multivariate Analysis of Ecological Data using CANOCO, V5, P1; Thomson J, 1998, GEOCHIM COSMOCHIM AC, V62, P643, DOI 10.1016/S0016-7037(97)00378-5; VANOS B, 1993, DEEP-SEA RES PT I, V40, P1713, DOI 10.1016/0967-0637(93)90028-2; Versteegh GJM, 2007, ORG GEOCHEM, V38, P1643, DOI 10.1016/j.orggeochem.2007.06.007; Versteegh GJM, 2020, BIOGEOSCIENCES, V17, P3545, DOI 10.5194/bg-17-3545-2020; Versteegh GJM, 2012, ORG GEOCHEM, V43, P92, DOI 10.1016/j.orggeochem.2011.10.007; Versteegh GJM, 2004, ORG GEOCHEM, V35, P1129, DOI 10.1016/j.orggeochem.2004.06.012; Versteegh GJM, 2002, GEOLOGY, V30, P615, DOI 10.1130/0091-7613(2002)030<0615:UOSDTS>2.0.CO;2; Wakeham SG, 1997, GEOCHIM COSMOCHIM AC, V61, P5363, DOI 10.1016/S0016-7037(97)00312-8; WEAVER PPE, 1992, MAR GEOL, V109, P1, DOI 10.1016/0025-3227(92)90218-7; Weber T, 2020, FRONT EARTH SC-SWITZ, V8, DOI 10.3389/feart.2020.00376; Zaben MJA, 2011, BRIT J NEUROSURG, V25, P754, DOI 10.3109/02688697.2010.544791; Zonneveld K., 2013, REPORT PRELIMINARY R, V296, P1; Zonneveld K., 2016, AEROBIC DEGRADATION, DOI [10.2312/cr_msm48, DOI 10.2312/CR_MSM48]; Zonneveld KAF, 2010, BIOGEOSCIENCES, V7, P483, DOI 10.5194/bg-7-483-2010; Zonneveld KAF, 1997, MAR MICROPALEONTOL, V29, P393, DOI 10.1016/S0377-8398(96)00032-1; Zonneveld KAF, 2008, MAR MICROPALEONTOL, V68, P179, DOI 10.1016/j.marmicro.2008.01.015; Zonneveld KAF, 2019, MAR GEOL, V408, P87, DOI 10.1016/j.margeo.2018.11.010	48	1	1	0	6	FRONTIERS MEDIA SA	LAUSANNE	AVENUE DU TRIBUNAL FEDERAL 34, LAUSANNE, CH-1015, SWITZERLAND		2296-7745		FRONT MAR SCI	Front. Mar. Sci.	DEC 7	2022	9								1040543	10.3389/fmars.2022.1040543	http://dx.doi.org/10.3389/fmars.2022.1040543			13	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	7B7RP		gold			2025-03-11	WOS:000899326600001
J	Gao, JF; Su, Q				Gao, Junfeng; Su, Qiang			A multi-level exploration of the relationship between temperature and species diversity: Two cases of marine phytoplankton	ECOLOGY AND EVOLUTION			English	Article						coccolithophore; dinoflagellate cyst; fractal model; species abundance distribution; the asymptotic relationship	ABUNDANCE DISTRIBUTION; METABOLIC THEORY; SELF-SIMILARITY; RICHNESS; BIODIVERSITY; PATTERNS; EVENNESS; GRADIENTS; INDEXES; SIZE	The relationship between temperature (T) and diversity is one of the most important issues in ecology. It provides a key direction not only for exploring the determinants of diversity's patterns, but also for understanding diversity's responses to climate change. Previous studies suggested that T-diversity relationships could be positive, negative, or unimodal. Although these studies accumulated many informative achievements, they might be unsatisfied due to (1) investigating inadequate range of T, (2) selecting incomplete diversity metrics, and (3) making insufficiently detailed analysis of correlation. In this study, species diversity is estimated by four most commonly used diversity metrics and three parameters of species abundance distribution (SAD), and two global datasets of marine phytoplankton (covering a wider range of T) are used to evaluate the T-diversity relationships according to a piecewise model. Results show that all aspects of diversity (except evenness) have the similar relationship with T in the range of lower T, noting that diversity significantly increases as T increases. However, in the range of higher T, diversity may significantly decrease or nearly constant, which indicates that their relationships may be the unimodal or asymptotic. The asymptotic relationship found by this study is assumed that increasing diversity with T will gradually approach the Zipf's law (1:1/2:1/3 horizontal ellipsis ). If such assumption can be verified by future investigations, the intrinsic mechanism of the asymptotic relationship is likely to be crucial in understanding the T-diversity relationships.	[Gao, Junfeng; Su, Qiang] Univ Chinese Acad Sci UCAS, Coll Earth & Planetary Sci CEPS, Beijing, Peoples R China; [Su, Qiang] Univ Chinese Acad Sci UCAS, Coll Earth & Planetary Sci CEPS, 19A Yuquan Rd, Beijing 100049, Peoples R China		Su, Q (通讯作者)，Univ Chinese Acad Sci UCAS, Coll Earth & Planetary Sci CEPS, 19A Yuquan Rd, Beijing 100049, Peoples R China.	sqiang@ucas.ac.cn	Su, Qiang/H-3616-2017; Gao, Junfeng/JDV-8786-2023	Gao, Junfeng/0000-0003-3334-3555; , SU/0000-0002-8044-8176	National Natural Science Foundation of China;  [42071137];  [41676113]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); ; 	ACKNOWLEDGMENTS This work was supported by the National Natural Science Foundation of China, Grant No. 42071137 and No. 41676113. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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Evol.	DEC	2022	12	12							e9584	10.1002/ece3.9584	http://dx.doi.org/10.1002/ece3.9584			10	Ecology; Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Evolutionary Biology	6Y6OX	36523537	gold, Green Published			2025-03-11	WOS:000897213300001
J	Anderson, DM; Fachon, E; Hubbard, K; Lefebvre, KA; Lin, PG; Pickart, R; Richlen, M; Sheffield, G; Van Hemert, C				Anderson, Donald M.; Fachon, Evangeline; Hubbard, Katherine; Lefebvre, Kathi A.; Lin, Peigen; Pickart, Robert; Richlen, Mindy; Sheffield, Gay; Van Hemert, Caroline			HARMFUL ALGAL BLOOMS IN THE ALASKAN ARCTIC AN EMERGING THREAT AS THE OCEAN WARMS	OCEANOGRAPHY			English	Article							PSEUDO-NITZSCHIA; DOMOIC ACID; CHUKCHI SEA; TOXINS; ABUNDANCE; SHIFTS; CYSTS; WATER	Harmful algal blooms (HABs) present an emerging threat to human and ecosystem health in the Alaskan Arctic. Two HAB toxins are of concern in the region: saxitoxins (STXs), a family of compounds produced by the dinoflagellate Alexandrium catenella, and domoic acid (DA), produced by multiple species in the diatom genus Pseudo-nitzschia. These potent neurotoxins cause paralytic and amnesic shellfish poisoning, respectively, in humans, and can accumulate in marine organisms through food web transfer, causing illness and mortality among a suite of wildlife species. With pronounced warming in the Arctic, along with enhanced transport of cells from southern waters, there is significant potential for more frequent and larger HABs of both types. STXs and DA have been detected in the tissues of a range of marine organisms in the region, many of which are important food resources for local residents. The unique nature of the Alaskan Arctic, including difficult logisticalaccess,lack of response infrastructure, and reliance of coastal populations on the noncommercial acquisition of marine resources for nutritional, cultural, and economic well-being, poses urgent and significant challenges as this region warms and the potential for impacts from HABs expands.	[Anderson, Donald M.; Richlen, Mindy] Woods Hole Oceanog Inst WHOI, Biol Dept, Woods Hole, MA 02543 USA; [Fachon, Evangeline] MIT, WHOI Joint Program Biol Oceanog, Woods Hole, MA USA; [Hubbard, Katherine] Florida Fish & Wildlife Conservat Commiss, Fish & Wildlife Res Inst, St Petersburg, FL USA; [Lefebvre, Kathi A.] Northwest Fisheries Sci Ctr, NOAA, Seattle, WA USA; [Lin, Peigen; Pickart, Robert] WHOI, Phys Oceanog Dept, Woods Hole, MA USA; [Sheffield, Gay] Univ Alaska Fairbanks, Alaska Sea Grant, Fairbanks, AK USA; [Van Hemert, Caroline] US Geol Survey Alaska Sci Ctr, Res Wildlife Biologist, Anchorage, AK USA	Massachusetts Institute of Technology (MIT); Florida Fish & Wildlife Conservation Commission; National Oceanic Atmospheric Admin (NOAA) - USA; University of Alaska System; University of Alaska Fairbanks	Anderson, DM (通讯作者)，Woods Hole Oceanog Inst WHOI, Biol Dept, Woods Hole, MA 02543 USA.	danderson@whoi.edu			NSF Office of Polar Programs [OPP-1823002, OPP-1733564]; NOAA's Arctic Research program (Cooperative Institute for the North Atlantic Region [CINAR]) [NA14OAR4320158, NA19OAR4320074]; NOAA's Center for Coastal and Ocean Studies ECOHAB Program [NA20NOS4780195]; US National Park Service Shared Beringian Heritage Program [P21AC12214-00]	NSF Office of Polar Programs(National Science Foundation (NSF)); NOAA's Arctic Research program (Cooperative Institute for the North Atlantic Region [CINAR]); NOAA's Center for Coastal and Ocean Studies ECOHAB Program; US National Park Service Shared Beringian Heritage Program	The authors acknowledge that the Alaskan Arctic as described here includes the lands and waters of the Inupiaq, Saint Lawrence Island Yupik, and Central Yupik peoples. Funding for DMA, RSP, EF, PL, and MLR was provided by grants from NSF Office of Polar Programs (OPP-1823002 and OPP-1733564) and NOAA's Arctic Research program (through the Cooperative Institute for the North Atlantic Region [CINAR]; NA14OAR4320158 and NA19OAR4320074), and for DMA, KH, and KAL through NOAA's Center for Coastal and Ocean Studies ECOHAB Program (NA20NOS4780195). Additional support was pro-vided for DMA, MLR, and EF by the US National Park Service Shared Beringian Heritage Program (P21AC12214-00). We also thank Natalie Renier (WHOI Graphic Services) and Emily Bowers (Northwest Fisheries Science Center) for creating figures. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the US Government. This is ECOHAB Contribution number 1007.	Alaska DHSS (Alaska Department of Health and Social Services), 2020, REC AL DEATH DUE PAR; Anderson CR, 2019, FRONT MAR SCI, V6, DOI 10.3389/fmars.2019.00250; Anderson DM, 2021, P NATL ACAD SCI USA, V118, DOI 10.1073/pnas.2107387118; Anderson DM, 2021, HARMFUL ALGAE, V102, DOI 10.1016/j.hal.2021.101975; Anderson DM, 2014, DEEP-SEA RES PT II, V103, P6, DOI 10.1016/j.dsr2.2013.10.002; Anderson DM, 2012, ANNU REV MAR SCI, V4, P143, DOI 10.1146/annurev-marine-120308-081121; Bates SS, 2018, HARMFUL ALGAE, V79, P3, DOI 10.1016/j.hal.2018.06.001; Brosnahan ML, 2015, LIMNOL OCEANOGR, V60, P2059, DOI 10.1002/lno.10155; BURSA ADAM, 1963, ARCTIC JOUR ARCTIC INST N AMER, V16, P239; Deeds JR, 2008, MAR DRUGS, V6, P308, DOI [10.3390/md20080015, 10.3390/md6020308]; Doucette GJ, 2017, COMP ANAL C, V78, P411, DOI 10.1016/bs.coac.2017.06.006; Fair S.W., 1995, QAMANI COAST MY MIND; Fischer AD, 2018, PROTIST, V169, P645, DOI 10.1016/j.protis.2018.06.001; Grattan LM, 2018, TOXINS, V10, DOI 10.3390/toxins10030103; Gu HF, 2013, POLAR BIOL, V36, P427, DOI 10.1007/s00300-012-1273-5; Haroardóttir S, 2015, MAR DRUGS, V13, P3809, DOI 10.3390/md13063809; Hendrix AM, 2021, MAR MAMMAL SCI, V37, P1292, DOI 10.1111/mms.12822; Huntington HP, 2020, NAT CLIM CHANGE, V10, P342, DOI 10.1038/s41558-020-0695-2; Landsberg JH, 2014, TOXINS AND BIOLOGICALLY ACTIVE COMPOUNDS FROM MICROALGAE VOL 2: BIOLOGICAL EFFECTS AND RISK MANAGEMENT, P379; Lefebvre KA, 2001, MAR BIOL, V138, P693, DOI 10.1007/s002270000509; Lefebvre KA, 2022, HARMFUL ALGAE, V114, DOI 10.1016/j.hal.2022.102205; Lefebvre KA, 2016, HARMFUL ALGAE, V55, P13, DOI 10.1016/j.hal.2016.01.007; Lewitus AJ, 2012, HARMFUL ALGAE, V19, P133, DOI 10.1016/j.hal.2012.06.009; McCabe RM, 2016, GEOPHYS RES LETT, V43, P10366, DOI 10.1002/2016GL070023; McKibben SM, 2017, P NATL ACAD SCI USA, V114, P239, DOI 10.1073/pnas.1606798114; Miyazono A, 2012, HARMFUL ALGAE, V16, P81, DOI 10.1016/j.hal.2012.02.001; Natsuike M, 2017, HARMFUL ALGAE, V61, P80, DOI 10.1016/j.hal.2016.11.019; Natsuike M, 2013, HARMFUL ALGAE, V27, P52, DOI 10.1016/j.hal.2013.04.006; Olson RJ, 2007, LIMNOL OCEANOGR-METH, V5, P195, DOI 10.4319/lom.2007.5.195; Percopo I, 2016, J PHYCOL, V52, P184, DOI 10.1111/jpy.12395; Poulin Michel, 2011, Marine Biodiversity, V41, P13, DOI 10.1007/s12526-010-0058-8; Stevenson DE, 2019, POLAR BIOL, V42, P407, DOI 10.1007/s00300-018-2431-1; Tammilehto A, 2015, AQUAT TOXICOL, V159, P52, DOI 10.1016/j.aquatox.2014.11.026; Trainer VL, 2014, J SHELLFISH RES, V33, P531, DOI 10.2983/035.033.0222; Van Hemert C., 2021, AM ORNITHOLOGICAL SO; Van Hemert C, 2021, J WILDLIFE DIS, V57, P399, DOI 10.7589/JWD-D-20-00057; Weber C, 2021, PHYCOLOGIA, V60, P619, DOI 10.1080/00318884.2021.1973789; Wekell John C., 1994, Natural Toxins, V2, P197, DOI 10.1002/nt.2620020408	38	7	8	3	23	OCEANOGRAPHY SOC	ROCKVILLE	P.O. 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J	Li, FT; Yue, CX; Deng, YY; Tang, YZ				Li, Fengting; Yue, Caixia; Deng, Yunyan; Tang, Ying Zhong			Characterizing the Status of Energetic Metabolism of Dinoflagellate Resting Cysts under Mock Conditions of Marine Sediments via Physiological and Transcriptional Measurements	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES			English	Article						ATP content; energetic metabolism; resting cyst; Scrippsiella acuminata; tricarboxylic acid cycle; viability	HARMFUL ALGAL BLOOMS; TCA CYCLE; GONYAULAX-TAMARENSIS; CELL VIABILITY; ATP; EUTROPHICATION; GERMINATION; GLYCOLYSIS; COENZYME; CANCER	Similar to the seeds of higher plants, resting cysts, a non-motile, benthic, and dormant stage in the life history of many dinoflagellate species, play vital roles via germination in the seasonal dynamics and particularly the initiation of harmful algal blooms (HABs) of dinoflagellates. It is thus crucial for resting cysts to balance between the energetic catabolism for viability maintenance and the energy preservation for germination during their dormancy. Despite this importance, studies on how resting cysts of dinoflagellates accomplish energetic metabolism in marine sediment have been virtually absent. In this study, using the cosmopolitan HABs-causing species Scrippsiella acuminata as a representative, we measured the transcriptional activity of the most efficient pathway of the energy catabolism tricarboxylic acid (TCA) cycle, cell viability (via neutral red staining), and the cellular ATP content of resting cysts under a set of mock conditions in marine sediments (e.g., 4 degrees C, darkness, and anoxia) for a maximum period of one year. Based on the correlation analyses among the expression levels of genes, cyst viability, and ATP content, we revealed that the TCA cycle was still a crucial pathway of energetic catabolism for resting cysts under aerobic conditions, and its expression was elevated at higher temperatures, light irradiation, and the early stage of dormancy. Under anaerobic conditions, however, the TCA cycle pathway ceased expression in resting cysts, as also supported by ATP measurements. Our results have laid a cornerstone for the comprehensive revelation of the energetic metabolism and biochemical processes of dormancy of resting cysts in marine sediments.	[Li, Fengting; Yue, Caixia; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Li, Fengting; Deng, Yunyan; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Li, Fengting; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Yue, Caixia] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Deng, YY; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Deng, YY; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Deng, YY; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	yunyandeng@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	Yue, caixia/HHN-3747-2022	Tang, Ying-Zhong/0000-0003-0446-3128; Deng, Yunyan/0000-0001-5967-3611	Key Deployment Project of Centre for Ocean Mega - Research of Science, Chinese Academy of Sciences [COMS2019Q09]; National Science Foundation of China [42176207]; Marine Samp;T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) [2021QNLM040001]	Key Deployment Project of Centre for Ocean Mega - Research of Science, Chinese Academy of Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC)); Marine Samp;T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao)	This research was funded by the Key Deployment Project of Centre for Ocean Mega - Research of Science, Chinese Academy of Sciences (Grant No. COMS2019Q09), the National Science Foundation of China (Grant No. 42176207), and the Marine S & T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) (Grant No. 2021QNLM040001).	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J	Persson, A; Smith, BC				Persson, Agneta; Smith, Barry C.			Preservation of Dinoflagellate Cysts in Different Oxygen Regimes: Differences in Cyst Survival between Oxic and Anoxic Natural Environments	PHYCOLOGY			English	Article						dinoflagellate; resting cyst; preservation; hypoxia; sediment	SCRIPPSIELLA-TROCHOIDEA CYSTS; THECA RELATIONSHIP; ORGANIC-MATTER; RESTING CYSTS; SP-NOV; DINOPHYCEAE PERIDINIALES; SELECTIVE PRESERVATION; AEROBIC DEGRADATION; FEEDING-BEHAVIOR; MARINE-SEDIMENTS	This quantitative dinoflagellate cyst study reveals an enormous difference in survival rates in oxygenated versus anoxic sediments. Replicate samples of concentrated natural dinoflagellate cysts with the same initial species composition (1.4 x 104 resting cysts<middle dot>cm-3 sediment, 61% filled with live-appearing contents) were placed in bags of 20 mu m plankton screen. Replicate bags containing 10.0 cm-3 concentrated cyst samples were placed on the seafloor in different environments in Long Island Sound, USA (anoxic and oxygenated), as well as refrigerated in test tubes in the laboratory. Three sets of 15 bags were placed in each environment. Once every year for four consecutive years, three bags were recovered from each set, and the contents were analyzed by cyst counting and germination experiments. An enormous difference in preservation potential between samples in oxygenated versus anoxic environments was revealed. The number of dinoflagellate cysts decreased abruptly within the first year in the oxygen-rich environment; living cysts became very rare (only 5% remained) and also empty walls of cysts disappeared (20% of total cysts remained). In anoxic sediment samples, living cysts also decreased significantly with time, but less quickly. After 1 year, 35% of the living cysts in the anoxic environment and 70% of the living cysts refrigerated in test tubes remained intact. After 4 years, 21% of the cysts with contents in the anoxic environment remained, and 31% in test tubes. The empty cyst walls remained intact for a longer time under anoxic conditions, especially of species known to fossilize well. Germination experiments showed that cysts with live-appearing contents were likely alive, because species with identifiable live-appearing cysts were also identified as vegetative cells in corresponding slurry cultures. The cyst assemblage was dominated by Protoperidinaceae, Dipolopsalidaceae, and Gonyaulacaceae. Of special interest is the ichthyotoxic Margalefodinium polykrikoides, the bloom-forming Peridinium quinquecorne, which has an undescribed resting cyst, and a previously undescribed Krypoperidinium species. The results show greater preservation of dinoflagellate cysts in "dead-zone sea bottoms" and may also provide an answer to the question of the absence of cyst beds in an area despite observed sedimentation of dense blooms.	[Persson, Agneta] Gothenburg Univ, Dept Marine Ecol, POB 461, SE-40530 Gothenburg, Sweden; [Smith, Barry C.] NOAA, Natl Marine Fisheries Serv, Northeast Fisheries Sci Ctr, Milford Lab, Milford, CT 06460 USA; [Persson, Agneta] Smedjebacksvagen 13, SE-77190 Ludvika, Sweden	University of Gothenburg; National Oceanic Atmospheric Admin (NOAA) - USA	Persson, A (通讯作者)，Gothenburg Univ, Dept Marine Ecol, POB 461, SE-40530 Gothenburg, Sweden.	agnetapersson77@gmail.com			Swedish Royal Scientific Academy (KVA), CF Lundstroems Stiftelse [1390]; Ocar and Lili Lamm Foundation	Swedish Royal Scientific Academy (KVA), CF Lundstroems Stiftelse; Ocar and Lili Lamm Foundation	A.P. received travel grants from The Swedish Royal Scientific Academy (KVA), CF Lundstroems Stiftelse grant No. 1390, and grants from The Ocar and Lili Lamm Foundation.	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J	Gurdebeke, PR; Mertens, KN; Rajter, L; Meyvisch, P; Potvin, E; Yang, EJ; André, C; Pospelova, V; Louwye, S				Gurdebeke, Pieter R.; Mertens, Kenneth Neil; Rajter, Lubomir; Meyvisch, Pjotr; Potvin, Eric; Yang, Eun Jin; Andre, Coralie; Pospelova, Vera; Louwye, Stephen			The ciliophoran affinity of<i> Radiosperma</i><i> textum,</i> and its relation to other marine ciliate cysts	MARINE MICROPALEONTOLOGY			English	Article						Acritarch; Affinity; Cysts; Ciliate; LSU and SSU rDNA	RESTING CYSTS; DINOFLAGELLATE CYSTS; SURFACE SEDIMENTS; BALTIC SEA; ASKENASIA BLOCHMANN; BRITISH-COLUMBIA; BEAGLE CHANNEL; ACRITARCHS; DIVERSITY; PHYLOGENY	The acritarch genus Radiosperma has been reported from plankton and sediments since the late 19th century, with suggested biological affinities ranging from invertebrate eggs to tintinnids. Here, the genus description is improved and its two species, Radiosperma corbiferum and Radiosperma textum, are redescribed. Radiosperma textum is shown to be a ciliate cyst related to Askenasia based on new SSU and LSU rRNA sequences. The spatiotemporal distribution and ecology of both species are discussed. The chemical composition is documented based on micro-Fourier Transform Infrared spectroscopy. Furthermore, new SSU and LSU rRNA sequences for several flask shaped ciliate cysts (Fusopsis, Strombidium) are also included in the analysis and the occurrence of fossilizable cysts in the ciliophoran clade is reviewed.	[Gurdebeke, Pieter R.; Meyvisch, Pjotr; Andre, Coralie; Louwye, Stephen] Univ Ghent, Dept Geol, Krijgslaan 281,S8, B-9000 Ghent, Belgium; [Mertens, Kenneth Neil] IFREMER, LITTORAL, F-29900 Concarneau, France; [Rajter, Lubomir] Univ Duisburg Essen, Fac Biol, Phycol, Essen, Germany; [Potvin, Eric; Yang, Eun Jin] Korea Polar Res Inst, Div Polar Ocean Sci, Incheon 406840, Songdo, South Korea; [Potvin, Eric] Univ Concepcion, Inst Milenio Oceanog, POB 160-C, Concepcion, Chile; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, Minneapolis, MN 55455 USA	Ghent University; Ifremer; University of Duisburg Essen; Korea Polar Research Institute (KOPRI); Universidad de Concepcion; University of Minnesota System; University of Minnesota Twin Cities	Gurdebeke, PR (通讯作者)，Univ Ghent, Dept Geol, Krijgslaan 281,S8, B-9000 Ghent, Belgium.	pieter.gurdebeke@ugent.be	Mertens, Kenneth/AAO-9566-2020; Gurdebeke, Pieter/AAY-7059-2020; Meyvisch, Pjotr/ABB-1527-2021; Mertens, Kenneth/C-3386-2015; Louwye, Stephen/D-3856-2012	Pospelova, Vera/0000-0003-4049-8133; Meyvisch, Pjotr/0000-0002-1270-2152; Gurdebeke, Pieter R./0000-0003-1425-8515; Mertens, Kenneth/0000-0003-2005-9483; Louwye, Stephen/0000-0003-4814-4313	Ministry of Oceans and Fisheries, Korea [1525011760]; Regional Council of Brittany; General Council of Finistere; urban community of Concarneau-Cornouaille-Agglomeration; EPICE - Agence de l'Eau Loire-Bretagne; PhenoMap project - French National Research Agency (ANR)	Ministry of Oceans and Fisheries, Korea; Regional Council of Brittany(Region Bretagne); General Council of Finistere(Region Bretagne); urban community of Concarneau-Cornouaille-Agglomeration; EPICE - Agence de l'Eau Loire-Bretagne; PhenoMap project - French National Research Agency (ANR)(Agence Nationale de la Recherche (ANR)Agence nationale pour le developpement de la recherche en sante (ANDRS)Agence Nationale Des Plantes Medicinales Et Aromatiques, ANPMA, Morocco)	We would like to thank Nicolas Van Nieuwenhove who provided the sediment from the Labrador Sea used in this study for the genetic analyses. This research was a part of the project titled 'K-AWARE(KOPRI, 1525011760)', funded by the Ministry of Oceans and Fisheries, Korea. Astra Labuce (Latvian Institute of Aquatic Ecology) is thanked for sharing information in Radiosperma from the Gulf of Riga. The Regional Council of Brittany, the General Council of Finistere and the urban community of Concarneau-Cornouaille-Agglomeration are acknowledged for the funding of the Sigma 300 FE-SEM of the station of Marine Biology in Concarneau. KNM was supported by the project EPICE, financed by Agence de l'Eau Loire-Bretagne and the PhenoMap project, financed by the French National Research Agency (ANR). We are grateful for the constructive manuscript reviews by the editor and two anonymous reviewers.	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J	Obrezkova, MS; Pospelova, V; Kolesnik, AN				Obrezkova, Maria S.; Pospelova, Vera; Kolesnik, Aleksandr N.			Diatom and dinoflagellate cyst distribution in surface sediments of the Chukchi Sea in relation to the upper water masses	MARINE MICROPALEONTOLOGY			English	Article						Diatoms; Dinocysts; Phytoplankton; Arctic Ocean; Coastal waters; Productivity; Alexandrium; Sediment	RECENT MARINE-SEDIMENTS; NORTHERN NORTH-ATLANTIC; LAPTEV SEA; HYDROGRAPHIC CONDITIONS; ORGANIC-MATTER; ARCTIC-OCEAN; SELECTIVE PRESERVATION; ESTUARINE SEDIMENTS; ABSOLUTE ABUNDANCE; BOTTOM SEDIMENTS	Diatom and dinoflagellate cyst analyses were performed on 22 surface sediment samples from the Chukchi Sea to document their geographical distributions in one of the most understudied sections of the Arctic Ocean and to examine the influence of upper water masses on these two major groups of phytoplankton. Total concentrations vary from 0.9 to 5.9 x 10(6) valves g(-1) for diatoms and from 0.8 to 12.5 x 10(3) cysts g(-1) for organic-walled dinoflagellate cysts, with the highest values for both groups observed in the southern part of the Chukchi Sea and away from the Bering Strait. Well-preserved microfossils were recovered, with a total of 35 and 88 taxa of dinoflagellate cysts and diatoms, respectively. The most abundant diatoms are Paralia sulcata, Thalassiosira antarctica, Thalassiosira nordenskioeldii, and resting spores of Chaetoceros spp., whereas cysts of phototrophic Alexandrium spp., Operculodinium centrocarpum sensu Wall and Dale (1966), and heterotrophic Islandinium minutum and Brigantedinium spp. were most common in the dinoflagellate cyst assemblages. Cysts of HAB-causing Alexandrium spp. were found in most of the samples, with the highest abundances in Herald Canyon where they contribute similar to 56.6% to the cyst assemblage. As expected, cysts produced by heterotrophic dinoflagellates were more abundant where sedimentary diatom concentrations were the highest. Statistical analysis identified three major diatom and dinoflagellate cyst clusters: 1. Sites influenced by the Alaska Coastal Current in the eastern part of the Chukchi Sea are characterized by high abundances of P. sulcata and O. centrocarpum sensu Wall and Dale (1966); 2. The western part and Herald Canyon in the northern part of the Chukchi Sea are distinguished by diatoms Chaetoceros spp., T. antarctica and dinoflagellate cysts of Alexandrium spp. and affected by the Siberian Coastal Current and Bering Shelf Water; and 3. Assemblages in the southern part of the Chukchi Sea are recognized by noticeable abundances of T. nordenskioeldii and cryophilic diatom taxa, and dinoflagellate cysts I. minutum, as well as by overall lower percentages of cysts of Pentapharsodinium dalei and Brigantedinium spp. This work revealed the potential applicability of the combined use of diatoms and dinoflagellate cysts for reconstructions of past dynamic water mass changes in the Chukchi Sea.	[Obrezkova, Maria S.; Kolesnik, Aleksandr N.] Russian Acad Sci POI FEB RAS, VI Ilichev Pacific Oceanol Inst, Far Eastern Branch, Vladivostok 690041, Russia; [Pospelova, Vera] Univ Victoria, Sch Earth & Ocean Sci, STN CSC, POB 1700, Victoria, BC V8W 2Y2, Canada; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, Minneapolis, MN 55455 USA	Ilichev Pacific Oceanological Institute; University of Victoria; University of Minnesota System; University of Minnesota Twin Cities	Pospelova, V (通讯作者)，Univ Victoria, Sch Earth & Ocean Sci, STN CSC, POB 1700, Victoria, BC V8W 2Y2, Canada.	vpospe@umn.edu	Obrezkova, Mariia/J-9869-2015	Obrezkova, Mariia/0000-0002-5884-5001; Pospelova, Vera/0000-0003-4049-8133	Russian Science Foundation [21-17-00081]; POI FEB RAS [121021700342-9]; Natural Science and Engineering Research Council of Canada (NSERC) [RGPIN/6388-2015]	Russian Science Foundation(Russian Science Foundation (RSF)); POI FEB RAS; Natural Science and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC))	The authors are very grateful to Prof. A.S. Astakhov and Dr. A.A. Bosin for providing sediment samples for this study. Special thanks to L. V. Osipova for processing samples and preparing diatom slides, as well as to Drs. I.B. Tsoy, N.K. Vagina, T.V. Morozova, and J. Ren for their scientific input. We thank D. Bina, the Copernicus Online Data Access team, the National Oceanographic and Atmospheric Administration (NOAA) , the National Aeronautics and Space Administration (NASA) , and the State of Alaska Open data Geoportal website for providing data on water quality parameters in the region. We are grateful to the associate editor Dr. X. Crosta and three anonymous reviewers for their detailed and constructive comments that helped to improve this manuscript. This work was funded by the Russian Science Foundation (project 21-17-00081) and research cruises through POI FEB RAS (project 121021700342-9) . Funding for this study was partially provided by the Natural Science and Engineering Research Council of Canada (NSERC) to V.P. (discovery grant RGPIN/6388-2015) .	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Micropaleontol.	JAN	2023	178								102184	10.1016/j.marmicro.2022.102184	http://dx.doi.org/10.1016/j.marmicro.2022.102184		NOV 2022	28	Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Paleontology	6Q7JP		Bronze			2025-03-11	WOS:000891787400001
J	Hu, ZX; Song, XY; Wang, JX; Tao, Z; Sun, YY; Li, YH; Liu, YY; Deng, YY; Shang, LX; Chai, ZY; Tang, YZ				Hu, Zhangxi; Song, Xiaoying; Wang, Jinxiu; Tao, Zhe; Sun, Yuanyuan; Li, Yuhang; Liu, Yuyang; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Yingzhong			Reviving and characterizing three species of dinoflagellate cysts dormant for about 70 years in the East China Sea: <i>Biecheleria brevisulcata, Biecheleriopsis adriatica</i>, and <i>Scrippsiella donghaienis</i>	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						core sediment; dinoflagellate resting cyst; germination; Biecheleria brevisulcata; Biecheleriopsis adriatica; Scrippsiella donghaienis	SEDIMENT ARCHIVES; RESTING STAGES; SP-NOV; DINOPHYCEAE; GEN.; ULTRASTRUCTURE; PHYLOGENY; RECORD; GERMINATION; MORPHOLOGY	Many marine dinoflagellates can form resting cysts as a part of their life cycle, and the cysts could be buried in sediment and remained viable for as long as over 150 years. However, only a very limited number of cyst species have been revived from long-buried sediments and investigated in regard to a possible shift in the intra-specific genetic structure of a species detected from the historical record at a particular location. Here, we report a successful germination of three species of resting cysts that were sampled from the depth dated back to 1941 +/- 18 AD from a 44-cm sediment core from the East China Sea. Seven isolates were established from germination of single cyst isolation or multi-cyst germinations. LSU rRNA gene or ITS sequences of these strains were obtained, then they were identified to be Biecheleria brevisulcata (five strains), Biecheleriopsis adriatica (one strain), and Scrippsiella donghaienis (one strain) in terms of morphology and rRNA gene sequence. Biecheleria brevisulcata strain 1, Bps. adriatica strain 21, and S. donghaienis strain 23 were examined in detail with light microscope (LM) and scanning electron microscope (SEM), and analyzed with high performance liquid chromatography (HPLC) for their pigment compositions, and genetic diversity. We also confirmed the presence of a resting cyst of Bps. adriatica in the field for the first time. The LSU rRNA gene-based genetic distances of Bps. adriatica from that obtained from water sample, single-cell PCR sequencing for the cysts isolated from the surface sediment of the same sea area and that reported from other regions during the recent years, and ITS-based genetic distances of S. donghaienis from that obtained from cysts isolated from the surface sediment of the same location and that reported from other regions during the recent years indicated that the intra-specific genetic structure of each species in the sampling area may have shifted during the last 70 years. Our work confirms that B. brevisulcata, Bps. adriatica, and S. donghaienis, all described as new species around 2010, have inhabited the East China Sea for about 70 years. The present work reports for the first time the revival of dinoflagellate resting cysts long-buried in the coastal sediments of China, which facilitates further study on the historical occurrences of other harmful dinoflagellates and their relevance to the regional climate and environmental changes in China.	[Hu, Zhangxi] Guangdong Ocean Univ, Coll Fisheries, Zhanjiang 524088, Peoples R China; [Hu, Zhangxi; Song, Xiaoying; Wang, Jinxiu; Tao, Zhe; Liu, Yuyang; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Yingzhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Yingzhong] Pilot Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Sun, Yuanyuan] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China; [Li, Yuhang] Chinese Acad Sci, Inst Oceanol, Lab Marine Organism Taxon & Phylogeny, Qingdao 266071, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Chai, Zhaoyang; Tang, Yingzhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Song, Xiaoying; Wang, Jinxiu; Tao, Zhe] Univ Chinese Acad Sci, Beijing, Peoples R China	Guangdong Ocean University; Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Pilot Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	Chai, Zhaoyang/F-7485-2017; Li, Yuhang/J-2839-2019; ZHANG, hui jie/HTN-1690-2023; Li, Yang/KFB-5350-2024; Tao, Zhe/LIG-2380-2024		Science and Technology Basic Resources Investigation Program of China [2018FY100200]; National Natural Science Foundation of China [41976134]; Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao) [LMEES-YTSP-2018-01-04]; Program for Scientific Research Start-up Funds of Guangdong Ocean University [060302022201]	Science and Technology Basic Resources Investigation Program of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao); Program for Scientific Research Start-up Funds of Guangdong Ocean University	Supported by the Science and Technology Basic Resources Investigation Program of China (No. 2018FY100200), the National Natural Science Foundation of China (No. 41976134), the Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao) (No. LMEES-YTSP-2018-01-04), and the Program for Scientific Research Start-up Funds of Guangdong Ocean University (No. 060302022201)	ANDERSON DM, 1978, J PHYCOL, V14, P224, DOI 10.1111/j.1529-8817.1978.tb02452.x; Benico GA., 2019, Philippine Journal of Natural Sciences, V24, P34; Bolch CJS, 1997, PHYCOLOGIA, V36, P472, DOI 10.2216/i0031-8884-36-6-472.1; Boutrup PV, 2017, PROTIST, V168, P586, DOI 10.1016/j.protis.2017.08.001; Bravo Isabel, 2014, Microorganisms, V2, P11; Bringué M, 2016, PALAEOGEOGR PALAEOCL, V441, P787, DOI 10.1016/j.palaeo.2015.10.026; Dai XF, 2012, ESTUAR COAST SHELF S, V112, P192, DOI 10.1016/j.ecss.2012.07.016; Dale B, 2001, SCI MAR, V65, P257, DOI 10.3989/scimar.2001.65s2257; Dale B, 1999, ESTUAR COAST SHELF S, V48, P371, DOI 10.1006/ecss.1999.0427; Daugbjerg N, 2000, PHYCOLOGIA, V39, P302, DOI 10.2216/i0031-8884-39-4-302.1; de Freitas AD, 2020, RADIOCARBON, V62, P289, DOI 10.1017/RDC.2020.4; Delebecq G, 2020, J PHYCOL, V56, P1077, DOI 10.1111/jpy.13010; Ebenezer V, 2012, MAR BIOTECHNOL, V14, P129, DOI 10.1007/s10126-011-9427-y; Ellegaard M, 2013, MICROPALEAEONTOLOGIC, P149; Ellegaard M, 2020, COMMUN BIOL, V3, DOI 10.1038/s42003-020-0899-z; Ellegaard M, 2018, BIOL REV, V93, P166, DOI 10.1111/brv.12338; Ellegren H, 2016, NAT REV GENET, V17, P422, DOI 10.1038/nrg.2016.58; Erdner DL, 2011, PLOS ONE, V6, DOI 10.1371/journal.pone.0022965; FRITZ L, 1985, J PHYCOL, V21, P662, DOI 10.1111/j.0022-3646.1985.00662.x; García-Moreiras I, 2018, PALAEOGEOGR PALAEOCL, V504, P201, DOI 10.1016/j.palaeo.2018.05.032; Girault M, 2021, ISME J, V15, P2057, DOI 10.1038/s41396-021-00904-2; Gomez F., 2012, CICIMAR Oceanides, V27, P65; Gómez F, 2015, J PHYCOL, V51, P1088, DOI 10.1111/jpy.12346; Gu HF, 2008, J PHYCOL, V44, P478, DOI 10.1111/j.1529-8817.2008.00478.x; Gu HF, 2022, J PHYCOL, V58, P465, DOI 10.1111/jpy.13245; Guillard R. 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J	Díaz, PA; Molinet, C; Seguel, M; Niklitschek, EJ; Díaz, M; Alvarez, G; Pérez-Santos, I; Varela, D; Guzmán, L; Rodríguez-Villegas, C; Figueroa, R				Diaz, Patricio A.; Molinet, Carlos; Seguel, Miriam; Niklitschek, Edwin J.; Diaz, Manuel; Alvarez, Gonzalo; Perez-Santos, Ivan; Varela, Daniel; Guzman, Leonardo; Rodriguez-Villegas, Camilo; Figueroa, Rosa, I			Modelling the Spatial and Temporal Dynamics of Paralytic Shellfish Toxins (PST) at Different Scales: Implications for Research and Management	TOXINS			English	Article						Alexandrium catenella; paralytic shellfish toxins (PST); paralytic shellfish poisoning (PSP); detoxification dynamics; spatial scales; Chilean fjords	SCALLOP PATINOPECTEN-YESSOENSIS; ALEXANDRIUM-CATENELLA; RESTING CYSTS; DINOFLAGELLATE; BLOOMS; VARIABILITY; DETOXIFICATION; ACCUMULATION; ABUNDANCE; TOXICITY	Harmful algal blooms, in particular recurrent blooms of the dinoflagellate Alexandrium catenella, associated with paralytic shellfish poisoning (PSP), frequently limit commercial shellfish harvests, resulting in serious socio-economic consequences. Although the PSP-inducing species that threaten the most vulnerable commercial species of shellfish are very patchy and spatially heterogeneous in their distribution, the spatial and temporal scales of their effects have largely been ignored in monitoring programs and by researchers. In this study, we examined the spatial and temporal dynamics of PSP toxicity in the clam (Ameghinomya antiqua) in two fishing grounds in southern Chile (Ovalada Island and Low Bay). During the summer of 2009, both were affected by an intense toxic bloom of A. catenella (up to 1.1 x 10(6) cells L-1). Generalized linear models were used to assess the potential influence of different environmental variables on the field detoxification rates of PSP toxins over a period of 12 months. This was achieved using a four parameter exponential decay model to fit and compare field detoxification rates per sampling site. The results show differences in the spatial variability and temporal dynamics of PSP toxicity, given that greater toxicities (+10-fold) and faster detoxification (20% faster) are observed at the Ovalada Island site, the less oceanic zone, and where higher amounts of clam are annually produced. Our observations support the relevance of considering different spatial and temporal scales to obtain more accurate assessments of PSP accumulation and detoxification dynamics and to improve the efficacy of fisheries management after toxic events.	[Diaz, Patricio A.; Niklitschek, Edwin J.; Perez-Santos, Ivan; Varela, Daniel; Rodriguez-Villegas, Camilo] Univ Los Lagos, Ctr i Mar, Casilla 557, Puerto Montt 5290000, Chile; [Diaz, Patricio A.; Rodriguez-Villegas, Camilo] Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt 5290000, Chile; [Molinet, Carlos; Diaz, Manuel] Univ Austral Chile, Inst Acuicultura, Programa Invest Pesquera, Puerto Montt 5489001, Chile; [Molinet, Carlos] Ctr Interdisciplinario Invest Acuicola INCAR, Programa Integrat, Concepcion 4030000, Chile; [Seguel, Miriam] Univ Austral Chile, Ctr Reg Anal Recursos & Medio Ambiente CERAM, Puerto Montt 5110566, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Dept Acuicultura, Larrondo 1281, Coquimbo 1780000, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Ctr Invest & Desarrollo Tecnol Algas CIDTA, Larrondo 1281, Coquimbo 1780000, Chile; [Perez-Santos, Ivan] Univ Concepcion, Ctr Invest Oceanograf COPAS Sur Austral & COPAS C, Concepcion 4030576, Chile; [Perez-Santos, Ivan] Ctr Invest Ecosistemas Patagonia CIEP, Coyhaique 5951369, Chile; [Guzman, Leonardo] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Puerto Montt 5480000, Chile; [Figueroa, Rosa, I] Inst Espanol Oceanog IEO CSIC, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain	Universidad de Los Lagos; Universidad de Los Lagos; Universidad Austral de Chile; Universidad Austral de Chile; Universidad Catolica del Norte; Universidad Catolica del Norte; Universidad de Concepcion; Instituto de Fomento Pesquero (Valparaiso); Spanish Institute of Oceanography	Díaz, PA (通讯作者)，Univ Los Lagos, Ctr i Mar, Casilla 557, Puerto Montt 5290000, Chile.; Díaz, PA (通讯作者)，Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt 5290000, Chile.	patricio.diaz@ulagos.cl	Varela, Daniel/D-9484-2013; Alvarez, Gonzalo/W-1262-2017; Díaz, Manuel/AAM-6225-2021; Figueroa, Rosa/M-7598-2015; Niklitschek, Edwin/A-7066-2008; Diaz, Patricio/B-8128-2018; Rodriguez Villegas, Camilo/AAB-8563-2022; Perez, Ivan/B-9321-2018	Guzman, Leonardo/0000-0002-9288-8320; Niklitschek, Edwin/0000-0001-5561-3494; Diaz, Patricio/0000-0002-9403-8151; Alvarez Vergara, Gonzalo/0000-0001-5812-1559; Rodriguez Villegas, Camilo/0000-0002-1429-2775; Perez, Ivan/0000-0001-5804-9761; molinet, carlos/0000-0003-3702-0526; , Ivan Perez-Santos/0000-0002-0184-1122				Aguirre C, 2012, J GEOPHYS RES-OCEANS, V117, DOI 10.1029/2011JC007379; Alexander J., 2010, EFSA J, V8, P1; Alvarez G., 2019, PERSPECTIVES PHYCOLO, V6, DOI DOI 10.1127/PIP/2019/0081; Alvarez G, 2019, TOXINS, V11, DOI 10.3390/toxins11040188; ANDERSON DM, 1982, LIMNOL OCEANOGR, V27, P757, DOI 10.4319/lo.1982.27.4.0757; Anderson DM, 2014, DEEP-SEA RES PT II, V103, P264, DOI 10.1016/j.dsr2.2013.09.018; Anderson DM, 2012, HARMFUL ALGAE, V14, P10, DOI 10.1016/j.hal.2011.10.012; [Anonymous], 2005, Official Methods of Analysis of AOAC International; Blanco J, 1997, MAR ECOL PROG SER, V158, P165, DOI 10.3354/meps158165; Bricelj V. 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J	Feki, N; Khannous, L; Keskes, FA; Ben Slama, A; Levacher, D				Feki, Nesma; Khannous, Lamia; Keskes, Fatma Abdmouleh; Ben Slama, Abdelwaheb; Levacher, Daniel			Mobility of trace metals and microbiological pollution from dredged sediments to the Gulf of Gabes, Tunisia	ENVIRONMENTAL MONITORING AND ASSESSMENT			English	Article						Dredged sediments; Hydrodynamic; Trace metals; Pathogenic germs; Microalgae; Eutrophication	DINOFLAGELLATE CYSTS; SURFACE SEDIMENTS; SEA; BAY; DINOPHYCEAE; ALEXANDRIUM; LAGOON; WATER; CONTAMINATION; VIABILITY	Sediments are periodically dredged from the major ports in the Gulf of Gabes (GG) during maintenance operations. These sediments are dumped near the coats of Sfax and Gabes cities. In the present study, 6 trace metals (Cd, Cu, Cr, Ni, Pb, and Zn) concentrations were assessed in both sediments and column water taken from the different basins of Sfax port. This study is the first to focus on the microbial and microalgae contaminations of Sfax port sediments. The spatial distributions of trace metals in dredged sediments from the different basins of Sfax port show that the maximum concentrations of Cd (13.75 mu g/g), Cu (892.5 mu g/g), and Zn (1447 mu g/g) exceeded the Geode standard thresholds. The same elements, also detected in the water column, exceeded the toxicity thresholds for phytoplankton, shellfish, and algae (Cd 0.095 mu g/l, Cu 4.52 mu g/l, and Zn 37 mu g/l). The presence of coliforms, indicators of sewage pollution, as pathogenic germs (Pseudomonas), was shown through microbiological examinations of the sediments and water column. The microalgae enumeration showed the abundance of dinoflagellate cysts (stressed form) which attests to the presence of severe conditions in Sfax port. Different toxic species were identified as Prorocentrum lima and Alexandrium minutum. The same trace metal sources and abundance in Sfax port and GG sediments suggest the hypothesis of their transfer from their disposal sites in coastal areas to deeper depths in the GG and until Boughrara lagoon (BL). As trace metals, microalgae species were also transferred by hydrodynamic currents inside the GG where they found suitable conditions to their proliferation causing the seawater coloration phenomenon, eutrophication, and degradation of the aquatic system.	[Feki, Nesma] Univ Sfax, Fac Sci, Adv Technol Environm & Smart City UR SSESO2, Soukra Rd,BP 1171, Sfax 3000, Tunisia; [Khannous, Lamia] Univ Sfax, Fac Sfax, Toxicol & Microbiol Hlth & Environm LR17ES06, Sfax, Tunisia; [Keskes, Fatma Abdmouleh] Univ Sfax, Fac Sci Sfax, Rd Soukra Km 3-5,BP 1171, Sfax 3000, Tunisia; [Ben Slama, Abdelwaheb] Univ Sfax, Lab Eau Energie & Environm, Ecole Natl Ingn Sfax, LR99ES35, Soukra Rd,BP 3000, Sfax, Tunisia; [Levacher, Daniel] ComUE Normandie Univ, Unicaen, UMR 6143, CNRS,Morphodynam Continentale & Cotiere M2C, 24 Rue Tilleuls, F-14000 Caen, France	Universite de Sfax; Faculty of Sciences Sfax; Universite de Sfax; Universite de Sfax; Faculty of Sciences Sfax; Universite de Sfax; Ecole Nationale dIngenieurs de Sfax (ENIS); Universite de Caen Normandie; Centre National de la Recherche Scientifique (CNRS); CNRS - National Institute for Earth Sciences & Astronomy (INSU)	Feki, N (通讯作者)，Univ Sfax, Fac Sci, Adv Technol Environm & Smart City UR SSESO2, Soukra Rd,BP 1171, Sfax 3000, Tunisia.	nissma.feki@fss.usf.tn		Abdmouleh Keskes, fatma/0000-0001-8993-8182	Tunisian Ministry of Higher Education and Research	Tunisian Ministry of Higher Education and Research(Ministry of Higher Education & Scientific Research of Tunisia)	This study was supported by the Tunisian Ministry of Higher Education and Research.	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Monit. Assess.	NOV	2022	194	11							815	10.1007/s10661-022-10451-8	http://dx.doi.org/10.1007/s10661-022-10451-8			20	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	4S7DE	36131097				2025-03-11	WOS:000857596100004
J	Tang, WJ; Geng, HX; Xi, YJ; Zhang, QC; Tang, XX; Yu, RC				Tang, Wenjiao; Geng, Huixia; Xi, Yanjuan; Zhang, Qingchun; Tang, Xuexi; Yu, Rencheng			Mapping the resting cysts of dinoflagellate <i>Alexandrium catenella</i> along the coast of Qinhuangdao, China	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						harmful algal bloom (HAB); Alexandrium catenella; resting cyst; paralytic shellfish toxin (PST); Qinhuangdao	HARMFUL ALGAL BLOOMS; TIME PCR ASSAY; GENUS ALEXANDRIUM; YELLOW SEA; DINOPHYCEAE; GERMINATION; FUNDYENSE; TAMARENSE; BAY; ENUMERATION	Dinoflagellate Alexandrium catenella is a cosmopolitan bloom-forming species with complex life cycle, the formation and germination of resting cysts are critical for its bloom dynamics. In the coastal waters of Qinhuangdao, A. catenella has been identified as the major causative agent for paralytic shellfish poisoning, but there is little knowledge concerning its resting cysts in this region. In this study, three surveys were carried out along the coast of Qinhuangdao from 2020 to 2021 to map the distribution of A. catenella resting cysts, using a quantitative PCR (qPCR) assay specific for A. catenella. The resting cysts were detected in surface sediments during all the three surveys, and their distribution patterns were similar. High abundance of resting cysts (maximum 1 300 cysts/g sediment (wet weight)) were found in a region (119.62 degrees E-119.99 degrees E, 39.67 degrees N-39.98 degrees N) northeast to the coastal waters of Qinhuangdao, where surface sediments were mainly composed of clay and silt (percentage above 50%). Prior to the formation of the A. catenella bloom in March 2021, the abundance of A. catenella vegetative cells in seawater had extremely significant positive correlation with the abundance of resting cysts in surface sediments, reflecting the important role of resting cysts in the initiation of A. catenella blooms. As far as we know, this is the first report on the distribution of A. catenella cysts along the coast of Qinhuangdao. The results will offer a sound basis for the future monitoring and mitigation of toxic A. catenella blooms and paralytic shellfish poisoning events in this region.	[Tang, Wenjiao; Tang, Xuexi] Ocean Univ China, Coll Marine Life Sci, Qingdao 266003, Peoples R China; [Tang, Wenjiao; Geng, Huixia; Zhang, Qingchun; Yu, Rencheng] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Geng, Huixia; Zhang, Qingchun; Tang, Xuexi; Yu, Rencheng] Pilot Natl Lab Marine Sci & Technol Qingdao, Key Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Yu, Rencheng] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Geng, Huixia; Zhang, Qingchun; Yu, Rencheng] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Xi, Yanjuan] Hebei Acad Ocean & Fishery Sci, Qinhuangdao 066200, Hebei, Peoples R China	Ocean University of China; Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences	Zhang, QC; Yu, RC (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Zhang, QC; Yu, RC (通讯作者)，Pilot Natl Lab Marine Sci & Technol Qingdao, Key Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Yu, RC (通讯作者)，Univ Chinese Acad Sci, Beijing 100049, Peoples R China.; Zhang, QC; Yu, RC (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China.	qczhang@qdio.ac.cn; rcyu@qdio.ac.cn	Geng, Hui-Xia/X-5380-2018; Yu, Rencheng/J-4450-2017					Anderson D.M., 2003, Monographs on Oceanographic Methodology, V11, P165; Anderson DM, 2005, DEEP-SEA RES PT II, V52, P2522, DOI 10.1016/j.dsr2.2005.06.014; ANDERSON DM, 1990, MAR BIOL, V104, P511, DOI 10.1007/BF01314358; ANDERSON DM, 1979, ESTUAR COAST MAR SCI, V8, P279, DOI 10.1016/0302-3524(79)90098-7; Anderson Donald M., 1998, NATO ASI Series Series G Ecological Sciences, V41, P29; Anderson DM, 2014, DEEP-SEA RES PT II, V103, P6, DOI 10.1016/j.dsr2.2013.10.002; Anderson DM, 2012, HARMFUL ALGAE, V14, P10, DOI 10.1016/j.hal.2011.10.012; Anderson DM, 2012, ANNU REV MAR SCI, V4, P143, DOI 10.1146/annurev-marine-120308-081121; [Anonymous], 2004, MAR BIOT; ASAKAWA M, 1995, TOXICON, V33, P691, DOI 10.1016/0041-0101(94)00177-A; Berdalet E, 2016, J MAR BIOL ASSOC UK, V96, P61, DOI 10.1017/S0025315415001733; Bolch CJS, 1997, PHYCOLOGIA, V36, P472, DOI 10.2216/i0031-8884-36-6-472.1; Bravo I, 2006, EUR J PHYCOL, V41, P293, DOI 10.1080/09670260600810360; Brown AR, 2020, REV AQUACULT, V12, P1663, DOI 10.1111/raq.12403; Chen H.R., 2018, J. 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NOV	2022	40	6			SI		2312	2321		10.1007/s00343-022-2190-2	http://dx.doi.org/10.1007/s00343-022-2190-2		OCT 2022	10	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	7N1SD					2025-03-11	WOS:000870624200005
J	Gornik, SG; Flores, V; Reinhardt, F; Erber, L; Salas-Leiva, DE; Douvropoulou, O; Lassadi, I; Einarsson, E; Mörl, M; Git, A; Stadler, PF; Pain, A; Waller, RF				Gornik, Sebastian G.; Flores, Victor; Reinhardt, Franziska; Erber, Lieselotte; Salas-Leiva, Dayana E.; Douvropoulou, Olga; Lassadi, Imen; Einarsson, Elin; Moerl, Mario; Git, Anna; Stadler, Peter F.; Pain, Arnab; Waller, Ross F.			Mitochondrial Genomes in Perkinsus Decode Conserved Frameshifts in All Genes	MOLECULAR BIOLOGY AND EVOLUTION			English	Article						Myzozoa; Perkinsus; mitochondrial genome; frameshifts; programmed ribosomal frameshifting	SEQUENCE ALIGNMENT; EVOLUTION; APICOMPLEXAN; ALGORITHM; REVEAL; CODONS; ORIGIN; TREE	Mitochondrial genomes of apicomplexans, dinoflagellates, and chrompodellids that collectively make up the Myzozoa, encode only three proteins (Cytochrome b [COB], Cytochrome c oxidase subunit 1 [COX1], Cytochrome c oxidase subunit 3 [COX3]), contain fragmented ribosomal RNAs, and display extensive recombination, RNA trans-splicing, and RNA-editing. The early-diverging Perkinsozoa is the final major myzozoan lineage whose mitochondrial genomes remained poorly characterized. Previous reports of Perkinsus genes indicated independent acquisition of non-canonical features, namely the occurrence of multiple frameshifts. To determine both ancestral myzozoan and novel perkinsozoan mitochondrial genome features, we sequenced and assembled mitochondrial genomes of four Perkinsus species. These data show a simple ancestral genome with the common reduced coding capacity but disposition for rearrangement. We identified 75 frameshifts across the four species that occur as distinct types and that are highly conserved in gene location. A decoding mechanism apparently employs unused codons at the frameshift sites that advance translation either +1 or +2 frames to the next used codon. The locations of frameshifts are seemingly positioned to regulate protein folding of the nascent protein as it emerges from the ribosome. The cox3 gene is distinct in containing only one frameshift and showing strong selection against residues that are otherwise frequently encoded at the frameshift positions in cox1 and cob. All genes lack cysteine codons implying a reduction to 19 amino acids in these genomes. Furthermore, mitochondrion-encoded rRNA fragment complements are incomplete in Perkinsus spp. but some are found in the nuclear DNA suggesting import into the organelle. Perkinsus demonstrates further remarkable trajectories of organelle genome evolution including pervasive integration of frameshift translation into genome expression.	[Gornik, Sebastian G.] Heidelberg Univ, Ctr Organismal Studies, INF 230,Neuenheimer Feld 230, D-69120 Heidelberg, Germany; [Flores, Victor; Salas-Leiva, Dayana E.; Lassadi, Imen; Einarsson, Elin; Git, Anna; Waller, Ross F.] Univ Cambridge, Dept Biochem, Hopkins Bldg,Downing Site,Tennis Court Rd, Cambridge CB2 1QW, England; [Reinhardt, Franziska; Stadler, Peter F.] Univ Leipzig, Dept Comp Sci, Bioinformat Grp, Hartelstr 16-18, D-04107 Leipzig, Germany; [Reinhardt, Franziska; Stadler, Peter F.] Univ Leipzig, Interdisciplinary Ctr Bioinformat, Hartelstr 16-18, D-04107 Leipzig, Germany; [Erber, Lieselotte; Moerl, Mario] Univ Leipzig, Inst Biochem, Bruderstr 34, D-04103 Leipzig, Germany; [Douvropoulou, Olga; Pain, Arnab] King Abdullah Univ Sci & Technol KAUST, Biol & Environm Sci & Engn Div, Pathogen Genom Grp, Thuwal 239556900, Saudi Arabia; [Stadler, Peter F.] Max Planck Inst Math Sci, Discrete Biomath, D-04103 Leipzig, Germany; [Stadler, Peter F.] Univ Vienna, Inst Theoret Chem, Theoret Biochem Grp, Wahringer Str 17, A-1090 Vienna, Austria; [Stadler, Peter F.] Santa Fe Inst, 1399 Hyde Pk Rd, Santa Fe, NM 87501 USA; [Pain, Arnab] Hokkaido Univ, Int Inst Zoonosis Control, Kita Ku, 001-0020 North 20,West 10, Sapporo, Hokkaido 0010020, Japan	Ruprecht Karls University Heidelberg; University of Cambridge; Leipzig University; Leipzig University; Leipzig University; King Abdullah University of Science & Technology; Max Planck Society; University of Vienna; The Santa Fe Institute; Hokkaido University	Gornik, SG (通讯作者)，Heidelberg Univ, Ctr Organismal Studies, INF 230,Neuenheimer Feld 230, D-69120 Heidelberg, Germany.; Waller, RF (通讯作者)，Univ Cambridge, Dept Biochem, Hopkins Bldg,Downing Site,Tennis Court Rd, Cambridge CB2 1QW, England.	sebastian.gornik@googlemail.com; rfw26@cam.ac.uk	Waller, Ross/D-5761-2016; Stadler, Peter/L-7857-2015; Pain, Arnab/L-5766-2015; Flores, Victor/ABD-2096-2021	Gornik, Sebastian/0000-0002-8026-1336; Git, Anna/0000-0003-0973-9138; Douvropoulou, Olga/0000-0001-7672-5137; Morl, Mario/0000-0003-0972-9386	Gordon and Betty Moore Foundation; Australian Research Council [DP130100572]; King Abdullah University of Science and Technology (KAUST) [BAS/1/1020-01-01]; Deutsche Forschungsgemeinschaft (DFG) [MO 634/21-1, MO 634/8-2, INST 268/413-1]	Gordon and Betty Moore Foundation(Gordon and Betty Moore Foundation); Australian Research Council(Australian Research Council); King Abdullah University of Science and Technology (KAUST)(King Abdullah University of Science & Technology); Deutsche Forschungsgemeinschaft (DFG)(German Research Foundation (DFG))	This work was supported by grants from the the Gordon and Betty Moore Foundation (doi:10.37807/GBMF9194), Australian Research Council (DP130100572), the King Abdullah University of Science and Technology (KAUST; BAS/1/1020-01-01) and the Deutsche Forschungsgemeinschaft (DFG; MO 634/21-1, MO 634/8-2 and INST 268/413-1).	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Biol. Evol.	OCT 7	2022	39	10							msac191	10.1093/molbev/msac191	http://dx.doi.org/10.1093/molbev/msac191			16	Biochemistry & Molecular Biology; Evolutionary Biology; Genetics & Heredity	Science Citation Index Expanded (SCI-EXPANDED)	Biochemistry & Molecular Biology; Evolutionary Biology; Genetics & Heredity	5E7TR	36108082	Green Published			2025-03-11	WOS:000865826400007
J	Shen, PP; Li, Y; Tang, YN; Song, QS; Xue, Y				Shen, Ping-Ping; Li, Ying; Tang, Ya-Nan; Song, Qing-Shang; Xue, Yue			Sedimentary dinoflagellate cyst records of human-induced environmental changes in Daya Bay, the northern South China Sea	JOURNAL OF MARINE SYSTEMS			English	Article						Dinoflagellate cyst; Daya Bay; Sediment; Environmental changes	HARMFUL ALGAL BLOOMS; SURFACE SEDIMENTS; ORGANIC-MATTER; PHYTOPLANKTON; PRODUCTIVITY; NUTRIENT; PB-210; EUTROPHICATION; PERIDINIALES; INDICATORS	High resolution dinocyst records were established in sediment core to detect human-induced environmental changes in Daya Bay, the South China Sea. The grain was homogeneous except at depths of 17-18 cm, where the clay proportion increased dramatically from similar to 40% to similar to 80%. The Pb-210 activity varied from 25.1 Bq kg(-1) to 78.5 Bq kg(-1) and showed temporary interruption at depths 17-18 cm associated with 1978, while dinocysts showed no obvious hiatus. Totally 36 cyst species were identified, with the highest species richness (20) and cyst abundance (900 cysts g(-1)) occurring at 7-cm depth, associating with severe blooms of Scrippsiella acuminate from 1998 to 2000 in Daya Bay. Cyst assemblages showed high similarity (>70%), especially in the interrupted and upper layers, indicating similar marine-originated for these intervals. Moreover, autotrophic and heterotrophic cysts dominated alternately before and after 1978, indicating high potential of the cysts to trace human-induced environmental changes in Daya Bay.	[Shen, Ping-Ping; Song, Qing-Shang; Xue, Yue] Yantai Univ, Ocean Sch, Yantai 264005, Peoples R China; [Li, Ying] Bluepha Shenzhen Co Ltd, Shenzhen 518000, Peoples R China; [Tang, Ya-Nan] Westlake Univ, Biomed Res Core Facil, Hangzhou 310024, Peoples R China; [Shen, Ping-Ping] Yantai Univ, Ocean Sch, 30 Qingquan Rd, Yantai 264005, Peoples R China	Yantai University; Westlake University; Yantai University	Shen, PP (通讯作者)，Yantai Univ, Ocean Sch, 30 Qingquan Rd, Yantai 264005, Peoples R China.	pshen@ytu.edu.cn	Huang, xu/JDD-1638-2023; Shen, PP/S-1616-2016		National Basic Research Program of China [2015CB452903]; National Natural Science Foundation of China [41976114]; Natural Science Foundation of Guangdong Province [2017A030313216]	National Basic Research Program of China(National Basic Research Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Natural Science Foundation of Guangdong Province(National Natural Science Foundation of Guangdong Province)	This study was funded by the National Basic Research Program of China (2015CB452903), National Natural Science Foundation of China (41976114), and the Natural Science Foundation of Guangdong Province (2017A030313216). We want to thank our team members in South China Sea Institute of Oceanology, CAS, and Xiamen University for their technical support and assistance.	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Mar. Syst.	JAN	2023	237								103823	10.1016/j.jmarsys.2022.103823	http://dx.doi.org/10.1016/j.jmarsys.2022.103823		OCT 2022	8	Geosciences, Multidisciplinary; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Geology; Marine & Freshwater Biology; Oceanography	5K3XE					2025-03-11	WOS:000869661700002
J	Qi, L; Wang, MH; Hu, CM; Holt, B				Qi, Lin; Wang, Menghua; Hu, Chuanmin; Holt, Benjamin			On the capacity of Sentinel-1 synthetic aperture radar in detecting floating macroalgae and other floating matters	REMOTE SENSING OF ENVIRONMENT			English	Article						Remote sensing; Sentinel-1; Sentinel-2; SAR; MSI; Macroalgae; Ulva Prolifera; Sargassum horneri; Sargassum fluitans/natans; Cyanobacteria; Microcystis; Nodularia spumigena; Trichodesmium; Floating matters; Sea snots; Brine shrimp cysts; Marine debris; Driftwood	ULVA-PROLIFERA; BLOOMS; JAPAN; SEA; SAR; CYANOBACTERIA; AVHRR; BAY	Various types of floating macroalgae and other floating matters have been reported in the global oceans and inland waters, and their remote detection has relied primarily on passive optical sensors. These sensors provide multiple spectral bands and frequent revisits, yet they all suffer from clouds. Synthetic aperture radar (SAR) imagers are active sensors that overcome this obstacle, yet their capacity in detecting macroalgae and other floating matters is generally unknown. Here, through statistical analysis and comparison of the Sentinel-2/MultiSpectral Instrument (MSI) and Sentinel-1/SAR imagery, we attempt to fill this knowledge gap. The types of floating matters considered in this study include macroalgae (Ulva Prolifera in the Yellow Sea, Sargassum horneri in the East China Sea, and Sargassum fluitans/natans in the Caribbean Sea), cyanobacteria (Microcystis, Nodularia spumigena, and Trichodesmium), dinoflagellates (green and red Noctiluca), organic matters (sea snots and brine shrimp cysts), and marine debris (driftwood). Of these, the only floating matter that can be definitively detected in Sentinel-1/SAR imagery is U. prolifera, followed by the occasional detection of S. fluitans/natans and driftwood. In all detection cases, the macroalgae features always appear in Sentinel-1/SAR imagery with positive contrast from the surrounding waters. Because of the all-weather measurements, SAR observations can therefore complement those from the optical sensors in monitoring and tracking U. prolifera and S. fluitans/natans in their respective regions.	[Qi, Lin; Wang, Menghua] NOAA, Ctr Satellite Applicat & Res, College Pk, MD 20740 USA; [Qi, Lin] Global Sci & Technol Inc, Greenbelt, MD USA; [Hu, Chuanmin] Univ S Florida, Coll Marine Sci, St Petersburg, FL USA; [Holt, Benjamin] CALTECH, Jet Prop Lab, Pasadena, CA USA	National Oceanic Atmospheric Admin (NOAA) - USA; National Aeronautics & Space Administration (NASA); State University System of Florida; University of South Florida; California Institute of Technology; National Aeronautics & Space Administration (NASA); NASA Jet Propulsion Laboratory (JPL)	Qi, L (通讯作者)，NOAA, Ctr Satellite Applicat & Res, College Pk, MD 20740 USA.	lin.qi@noaa.gov	hu, chuanmin/J-5021-2012; Wang, Menghua/F-5631-2010	Holt, Benjamin/0000-0003-4065-3076	NOAA; U.S. NASA [80NSSC20M0264, 80NSSC21K0422]	NOAA(National Oceanic Atmospheric Admin (NOAA) - USA); U.S. NASA(National Aeronautics & Space Administration (NASA))	This work was supported by the Joint Polar Satellite System (JPSS) funding for the NOAA ocean color calibration and validation (Cal/Val) project and by the U.S. NASA (80NSSC20M0264, 80NSSC21K0422, and NASA's Commercial SmallSat Data Acquisition (CSDA) Program). The research was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under contract with the National Aeronautics and Space Administration. We thank EUMETSAT and NOAA for providing all satellite data in this study, and thank Dr. Qiusheng Wu (University of Tennessee, USA) and Dr. Yongxue Liu (Nanjing University, China) for providing computer codes to download satellite data from the GEE platform. We also thank the two anonymous reviewers for providing valuable comments. The scientific results and conclusions, as well as any views or opinions expressed herein, are those of the author(s) and do not necessarily reflect those of NOAA or the Department of Commerce.	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Environ.	OCT	2022	280								113188	10.1016/j.rse.2022.113188	http://dx.doi.org/10.1016/j.rse.2022.113188			16	Environmental Sciences; Remote Sensing; Imaging Science & Photographic Technology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Remote Sensing; Imaging Science & Photographic Technology	8V6WV					2025-03-11	WOS:000930771300003
J	Wu, HY; Dong, CF; Zheng, GC; Zhang, ZH; Zhang, YY; Tan, ZJ; Gu, HF				Wu, Hai-Yan; Dong, Chen-Fan; Zheng, Guan-Chao; Zhang, Zhi-Hua; Zhang, Ya-Ya; Tan, Zhi-Jun; Gu, Hai-Feng			Formation mechanism and environmental drivers of Alexandrium catenella bloom events in the coastal waters of Qinhuangdao, China	ENVIRONMENTAL POLLUTION			English	Article						Alexandrium catenella; Mussel; Paralytic shellfish toxin; Biotransformation	PARALYTIC SHELLFISH TOXINS; TEMPERATURE; BAY; SAXITOXIN; SAMPLES; GROWTH; WIND	In the last 5 years, paralytic shellfish toxins (PSTs) have been recurrently detected in mollusks farmed in the mussel culture area of Qinhuangdao city, along with the occurrence of toxic outbreaks linked to dinoflagellate species of the Alexandrium genus. To understand the formation mechanism and variation of these events, continuous and comprehensive PSTs monitoring was carried out between 2017 and 2020. Through the analysis of both phytoplankton and cysts via light microscopy and quantitative polymerase chain reaction, it was shown that Alexandrium catenella was responsible for the production of PSTs, which consisted mainly of gonyautoxins 1,4 (GTX1/4, 87%) and GTX2/3 (13%). During bloom events in 2019, mussels accumulated the highest PSTs value (929 mu g STX di-HCl eq center dot kg 1) in conjunction with the peak of cell abundances, and toxin profiles were consistent with high distributions of GTX1/4, GTX2/3, and Neosaxitoxin. Toxin metabolites vary in different substances and mainly transferred to a stable proportion of a-epimer: ss-epimers 3:1. The environmental drivers of Alexandrium blooms included the continuous rise of water temperature (>4.C) and calm weather with low wind speed and no significant precipitation. By comparing toxin profiles and method sensitivity, it was found that dissolved toxins in seawater are more useful for early warning. These results have important implications for the effective monitoring and management of paralytic shellfish poisoning outbreaks.	[Wu, Hai-Yan; Dong, Chen-Fan; Zheng, Guan-Chao; Zhang, Ya-Ya; Tan, Zhi-Jun] Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Minist Agr & Rural Affairs, Key Lab Testing & Evaluat Aquat Prod Safety & Qua, Qingdao 266071, Peoples R China; [Dong, Chen-Fan] Shanghai Ocean Univ, Coll Food Sci & Technol, Shanghai 201306, Peoples R China; [Zhang, Zhi-Hua] Hebei Prov Aquat Prod Qual Inspect & Testing Stn, Shijiazhuang 050011, Peoples R China; [Tan, Zhi-Jun] Pilot Natl Lab Marine Sci & Technol Qingdao, Qingdao 266071, Peoples R China; [Gu, Hai-Feng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China	Chinese Academy of Fishery Sciences; Yellow Sea Fisheries Research Institute, CAFS; Ministry of Agriculture & Rural Affairs; Shanghai Ocean University; Laoshan Laboratory; Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources	Tan, ZJ (通讯作者)，Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Minist Agr & Rural Affairs, Key Lab Testing & Evaluat Aquat Prod Safety & Qua, Qingdao 266071, Peoples R China.		dong, chenfan/GZM-2060-2022; zhang, zhihua/AAW-6011-2020; Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171; dong, chenfan/0000-0001-5940-5422	National Key R&D Program of China, Beijing, China [2017YFC1600701]; National Natural Science Foundation of China, Beijign, China [31772075, 32072329]; Central Public-interest Scientific Institution Basal Research Fund, CAFS, Beijing, China [2020TD71]	National Key R&D Program of China, Beijing, China; National Natural Science Foundation of China, Beijign, China(National Natural Science Foundation of China (NSFC)); Central Public-interest Scientific Institution Basal Research Fund, CAFS, Beijing, China	This work was supported by the National Key R&D Program of China, Beijing, China (NO. 2017YFC1600701), the National Natural Science Foundation of China, Beijign, China (NO. 31772075, 32072329) and the Central Public-interest Scientific Institution Basal Research Fund, CAFS, Beijing, China (NO. 2020TD71).	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Pollut.	NOV 15	2022	313									10.1016/j.envpol.2022.120241	http://dx.doi.org/10.1016/j.envpol.2022.120241		SEP 2022	8	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	6Q1YN	36152713				2025-03-11	WOS:000891414700008
J	Salazar, OR; Arun, PN; Cui, G; Bay, LK; Van Oppen, MJH; Webster, NS; Aranda, M				Salazar, Octavio R.; Arun, Prasanna N.; Cui, Guoxin; Bay, Line K.; Van Oppen, Madeleine J. H.; Webster, Nicole S.; Aranda, Manuel			The coral <i>Acropora loripes</i> genome reveals an alternative pathway for cysteine biosynthesis in animals	SCIENCE ADVANCES			English	Article							CYSTATHIONINE BETA-SYNTHASE; PHOSPHO-L-SERINE; MYCOBACTERIUM-TUBERCULOSIS; SCHIZOSACCHAROMYCES-POMBE; CAENORHABDITIS-ELEGANS; HYDROGEN-SULFIDE; GENE ONTOLOGY; CBS DOMAINS; SEQUENCE; ANNOTATION	The metabolic capabilities of animals have been derived from well-studied model organisms and are generally considered to be well understood. In animals, cysteine is an important amino acid thought to be exclusively synthesized through the transsulfuration pathway. Corals of the genus Acropora have lost cystathionine.-synthase, a key enzyme of the transsulfuration pathway, and it was proposed that Acropora relies on the symbiosis with dinoflagellates of the family Symbiodiniaceae for the acquisition of cysteine. Here, we identify the existence of an alternative pathway for cysteine biosynthesis in animals through the analysis of the genome of the coral Acropora loripes. We demonstrate that these coral proteins are functional and synthesize cysteine in vivo, exhibiting previously unrecognized metabolic capabilities of animals. This pathway is also present in most animals but absent in mammals, arthropods, and nematodes, precisely the groups where most of the animal model organisms belong to, highlighting the risks of generalizing findings from model organisms.	[Salazar, Octavio R.; Arun, Prasanna N.; Cui, Guoxin; Aranda, Manuel] King Abdullah Univ Sci & Technol KAUST, Biol & Environm Sci & Engn Div, Marine Sci Program, Thuwal 239556900, Saudi Arabia; [Salazar, Octavio R.; Arun, Prasanna N.; Cui, Guoxin; Aranda, Manuel] King Abdullah Univ Sci & Technol, Red Sea Res Ctr, Thuwal, Saudi Arabia; [Bay, Line K.; Van Oppen, Madeleine J. H.; Webster, Nicole S.] Australian Inst Marine Sci, Townsville, Qld, Australia; [Bay, Line K.] James Cook Univ, Div Res & Innovat, AIMS JCU, Townsville, Qld, Australia; [Van Oppen, Madeleine J. H.] Univ Melbourne, Sch BioSci, Parkville, Vic 3010, Australia; [Webster, Nicole S.] Univ Queensland, Australian Ctr Ecogen, St Lucia, Qld, Australia; [Webster, Nicole S.] Australian Antarctic Div, Dept Agr Water & Environm, Kingston, Tas, Australia	King Abdullah University of Science & Technology; King Abdullah University of Science & Technology; Australian Institute of Marine Science; James Cook University; University of Melbourne; University of Queensland; Australian Antarctic Division	Salazar, OR; Aranda, M (通讯作者)，King Abdullah Univ Sci & Technol KAUST, Biol & Environm Sci & Engn Div, Marine Sci Program, Thuwal 239556900, Saudi Arabia.; Salazar, OR; Aranda, M (通讯作者)，King Abdullah Univ Sci & Technol, Red Sea Res Ctr, Thuwal, Saudi Arabia.	octavio.salazarmoya@kaust.edu.sa; manuel.aranda@kaust.edu.sa	Cui, Guoxin/Y-3028-2019; Bay, Line/D-4037-2009; van Oppen, Madeleine/C-3261-2008; Aranda Lastra, Manuel/D-9530-2011; Webster, Nicole/G-4980-2011	Cui, Guoxin/0000-0003-4951-1883; Aranda Lastra, Manuel/0000-0001-6673-016X; Salazar, Octavio R./0000-0001-6340-6524; Webster, Nicole/0000-0002-4753-5278; van Oppen, Madeleine JH/0000-0003-4607-0744; Bay, Line/0000-0002-9760-2977	AIMS; Australian Research Council [FL180100036]; KAUST; KAUST Office of Sponsored Research (OSR) [OSR-2018CPF-3627-3]	AIMS; Australian Research Council(Australian Research Council); KAUST(King Abdullah University of Science & Technology); KAUST Office of Sponsored Research (OSR)(King Abdullah University of Science & Technology)	This work was supported by the AIMS appropriation funding for the Evolution21 project, Australian Research Council Laureate Fellowship FL180100036, KAUST baseline funds, and KAUST Office of Sponsored Research (OSR) award no. 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Adv.	SEP 23	2022	8	38							eabq0304	10.1126/sciadv.abq0304	http://dx.doi.org/10.1126/sciadv.abq0304			12	Multidisciplinary Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Science & Technology - Other Topics	6H2ZX	36149959	gold, Green Accepted, Green Published			2025-03-11	WOS:000885315600017
J	Rodríguez-Villegas, C; Figueroa, R; Pérez-Santos, I; Molinet, C; Saldías, GS; Rosales, SA; Alvarez, G; Linford, P; Díaz, PA				Rodriguez-Villegas, Camilo; Figueroa, Rosa, I; Perez-Santos, Ivan; Molinet, Carlos; Saldias, Gonzalo S.; Rosales, Sergio A.; Alvarez, Gonzalo; Linford, Pamela; Diaz, Patricio A.			Continental shelf off northern Chilean Patagonia: A potential risk zone for the onset of<i> Alexandrium</i><i> catenella</i> toxic bloom?	MARINE POLLUTION BULLETIN			English	Article						Alexandrium catenella; Paralytic shellfish toxins (PST); Cyst beds; Upwelling; Submarine canyons; Chilean Patagonia	RESTING CYSTS; VARIABILITY; SCALE; DYNAMICS; OCEAN	Harmful Algal Blooms (HAB) pose a severe socio-economic problem worldwide. The dinoflagellate species Alexandrium catenella produces potent neurotoxins called saxitoxins (STXs) and its blooms are associated with the human intoxication named Paralytic Shellfish Poisoning (PSP). Knowing where and how these blooms originate is crucial to predict blooms. Most studies in the Chilean Patagonia, were focused on coastal areas, considering that blooms from the adjacent oceanic region are almost non-existent. Using a combination of field studies and modelling approaches, we first evaluated the role of the continental shelf off northern Chilean Patagonia as a source of A. catenella resting cysts, which may act as inoculum for their toxic coastal blooms. This area is characterized by a seasonal upwelling system with positive Ekman pumping during spring-summer, and by the presence of six major submarine canyons. We found out that these submarine canyons increase the vertical advection of bottom waters, and thus, significantly enhance the process of coastal upwelling. This is a previously unreported factor, among those involved in bloom initiation. This finding put this offshore area at high risk of resuspension of resting cysts of A. catenella. Here, we discuss in detail the physical processes promoting this resuspension.	[Rodriguez-Villegas, Camilo; Linford, Pamela] Univ Los Lagos, Programa Doctorado Ciencias, Menc Conservac & Manejo Recursos Nat, Camino Chinquihue Km 6, Puerto Montt, Chile; [Rodriguez-Villegas, Camilo; Perez-Santos, Ivan; Diaz, Patricio A.] Univ Los Lagos, Ctr i Mar, Casilla 557, Puerto Montt, Chile; [Rodriguez-Villegas, Camilo; Diaz, Patricio A.] Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt, Chile; [Figueroa, Rosa, I] Inst Espanol Oceanog IEO CSIC, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain; [Perez-Santos, Ivan; Saldias, Gonzalo S.] Univ Concepcion, Ctr Invest Oceanog COPAS COASTAL, Concepcion, Chile; [Perez-Santos, Ivan] Ctr Invest Ecosistemas Patagonia CIEP, Coyhaique, Chile; [Molinet, Carlos] Univ Austral Chile, Inst Acuicultura, Programa Invest Pesquera, Puerto Montt, Chile; [Molinet, Carlos] Ctr Interdisciplinario Invest Acuicola INCAR, Programa Integrat, Concepcion, Chile; [Saldias, Gonzalo S.] Univ Bio Bio, Fac Ciencias, Dept Fis, Concepcion, Chile; [Saldias, Gonzalo S.] Inst Milenio Socioecol Costera SECOS, Santiago, Chile; [Saldias, Gonzalo S.] Ctr Invest Dinam Ecosistemas Marinos Altas Latitu, Valdivia, Chile; [Rosales, Sergio A.] Univ Catolica Norte, Fac Ciencias Mar, Dept Biol Marina, Coquimbo, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Dept Acuicultura, Coquimbo 1281, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Ctr Invest & Desarrollo Tecnol Algas CIDTA, Coquimbo 1281, Chile	Universidad de Los Lagos; Universidad de Los Lagos; Universidad de Los Lagos; Spanish Institute of Oceanography; Universidad de Concepcion; Universidad Austral de Chile; Universidad del Bio-Bio; Universidad Catolica del Norte; Universidad Catolica del Norte; Universidad Catolica del Norte	Díaz, PA (通讯作者)，Univ Los Lagos, Ctr i Mar, Casilla 557, Puerto Montt, Chile.; Díaz, PA (通讯作者)，Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt, Chile.	patricio.diaz@ulagos.cl	Díaz, Patricio/B-8128-2018; Perez, Ivan/B-9321-2018; rosales, sergio/KEJ-0814-2024; Alvarez, Gonzalo/W-1262-2017; Saldías, Gonzalo/C-3577-2016; Rodriguez Villegas, Camilo/AAB-8563-2022; Figueroa, Rosa/M-7598-2015	/0000-0003-1798-9612; , Ivan Perez-Santos/0000-0002-0184-1122; Alvarez Vergara, Gonzalo/0000-0001-5812-1559; Rodriguez Villegas, Camilo/0000-0002-1429-2775; Figueroa, Rosa/0000-0001-9944-7993	Centre for Biotechnology and Bioengineering (CeBiB) (PIA project, ANID, Chile) [FB0001]; Universidad de Los Lagos; European Community (FEDER) [DIANAS-CTM2017-86066-R]; Innovation Agency of the Xunta de Galicia (GAIN) [GRC-VGOHAB IN607A-2019/04]; COPAS Sur-Austral [ANID AFB170006]; COPAS COASTAL [ANID FB210021]; CIEP [R20F002]; FONDECYT [1211037, 1220167]; FONDAP [15110027]; Millennium Science Initiative Program [ICN2019_015]; Spanish Ministry of Science and Innovation	Centre for Biotechnology and Bioengineering (CeBiB) (PIA project, ANID, Chile); Universidad de Los Lagos; European Community (FEDER)(European Union (EU)); Innovation Agency of the Xunta de Galicia (GAIN); COPAS Sur-Austral(Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT)CONICYT PIA/BASAL); COPAS COASTAL; CIEP(Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT)CONICYT Regional/CIEP); FONDECYT(Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT)CONICYT FONDECYT); FONDAP; Millennium Science Initiative Program; Spanish Ministry of Science and Innovation(Ministry of Science and Innovation, Spain (MICINN)Spanish Government)	This research has been primarily funded by the Centre for Biotechnology and Bioengineering (CeBiB) (PIA project FB0001, ANID, Chile). Camilo Rodriguez-Villegas was funded by a Ph.D. fellowship from the Universidad de Los Lagos. Rosa I. Figueroa was funded by a national project from the Spanish Ministry of Science and Innovation and the European Community (FEDER) (Project DIANAS-CTM2017-86066-R) and a grant for Galician Networks of Excellence (GRC-VGOHAB IN607A-2019/04) from the Innovation Agency of the Xunta de Galicia (GAIN). Ivan Perez-Santos was funded by COPAS Sur-Austral (ANID AFB170006), COPAS COASTAL (ANID FB210021), CIEP R20F002, and FONDECYT 1211037. Carlos Molinet was partially financed by the FONDAP Project N.15110027 (INCAR). Gonzalo Saldias is partially funded by FONDECYT 1220167, the Millennium Science Initiative Program (Code ICN2019_015), and by COPAS COASTAL (ANID FB210021).	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Pollut. Bull.	NOV	2022	184								114103	10.1016/j.marpolbul.2022.114103	http://dx.doi.org/10.1016/j.marpolbul.2022.114103		SEP 2022	7	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	5H4SF	36115195	Green Published			2025-03-11	WOS:000867669700008
J	Fernández-Herrera, LJ; Band-Schmidt, CJ; Zenteno-Savín, T; Leyva-Valencia, I; Hernández-Guerrero, CJ; Hernández-Sandoval, FE; Bustillos-Guzmán, JJ				Jose Fernandez-Herrera, Leyberth; Johanna Band-Schmidt, Christine; Zenteno-Savin, Tania; Leyva-Valencia, Ignacio; Judith Hernandez-Guerrero, Claudia; Eduardo Hernandez-Sandoval, Francisco; Jesus Bustillos-Guzman, Jose			Changes in Toxin Production, Morphology and Viability of <i>Gymnodinium catenatum</i> Associated with Allelopathy of <i>Chattonella marina</i> var. <i>marina</i> and <i>Gymnodinium impudicum</i>	TOXINS			English	Article						allelochemical; chemical ecology; paralytic shellfish toxins	GULF-OF-CALIFORNIA; HARMFUL ALGAL BLOOMS; DINOFLAGELLATE ALEXANDRIUM-OSTENFELDII; FATTY-ACID-COMPOSITION; CHEMICAL ECOLOGY; COCHLODINIUM-POLYKRIKOIDES; COMPETING PHYTOPLANKTON; SKELETONEMA-COSTATUM; KARENIA-MIKIMOTOI; MEXICAN PACIFIC	Allelopathy between phytoplankton organisms is promoted by substances released into the marine environment that limit the presence of the dominating species. We evaluated the allelopathic effects and response of cell-free media of Chattonella marina var. marina and Gymnodinium impudicum in the toxic dinoflagellate Gymnodinium catenatum. Additionally, single- and four-cell chains of G. catenatum isolated from media with allelochemicals were cultured to evaluate the effects of post exposure on growth and cell viability. Cell diagnosis showed growth limitation and an increase in cell volume, which reduced mobility and led to cell lysis. When G. catenatum was exposed to cell-free media of C. marina and G. impudicum, temporary cysts and an increased concentration of paralytic shellfish toxins were observed. After exposure to allelochemicals, the toxin profile of G. catenatum cells in the allelopathy experiments was composed of gonyautoxins 2/3 (GTX2/3), decarcarbamoyl (dcSTX, dcGTX2/3), and the sulfocarbamoyl toxins (B1 and C1/2). A difference in toxicity (pg STXeq cell(-1)) was observed between G. catenatum cells in the control and those exposed to the filtrates of C. marina var. marina and G. impudicum. Single cells of G. catenatum had a lower growth rate, whereas chain-forming cells had a higher growth rate. We suggest that a low number of G. catenatum cells can survive the allelopathic effect. We hypothesize that the survival strategy of G. catenatum is migration through the chemical cloud, encystment, and increased toxicity.	[Jose Fernandez-Herrera, Leyberth; Johanna Band-Schmidt, Christine; Leyva-Valencia, Ignacio; Judith Hernandez-Guerrero, Claudia] Inst Politecn Nacl, Ctr Interdisciplinario Ciencias Marinas IPN CICIM, Av Inst Politecn Nacl S-N, La Paz 23096, Bcs, Mexico; [Zenteno-Savin, Tania; Eduardo Hernandez-Sandoval, Francisco; Jesus Bustillos-Guzman, Jose] Inst Politecn Nacl 195, Ctr Invest Biol Noroeste CIBNOR, La Paz 23096, Bcs, Mexico; [Leyva-Valencia, Ignacio] CONACyT, IPN CICIMAR, Consejo Nacl Ciencia & Tecnol, Inst Politecn Nacl,Ctr Interdisciplinario Ciencia, La Paz 23096, Bcs, Mexico	Instituto Politecnico Nacional - Mexico; CIBNOR - Centro de Investigaciones Biologicas del Noroeste; Instituto Politecnico Nacional - Mexico	Fernández-Herrera, LJ; Band-Schmidt, CJ (通讯作者)，Inst Politecn Nacl, Ctr Interdisciplinario Ciencias Marinas IPN CICIM, Av Inst Politecn Nacl S-N, La Paz 23096, Bcs, Mexico.	lfernandezh1200@alumno.ipn.mx; cbands@ipn.mx	Hernandez-Guerrero, Claudia/AAD-9442-2020; Leyva, Ignacio/AAJ-5978-2020	HERNANDEZ SANDOVAL, FRANCISCO EDUARDO/0000-0003-2087-5835; Band-Schmidt, Christine Johanna/0000-0002-8251-9820; leyva valencia, ignacio/0000-0001-9904-1512; Zenteno-Savin, Tania/0000-0002-4080-9467	IPN, PLAYCO Programa de Planeacion Ambiental y Conservacion-CIBNOR, CIBNOR [SIP 20221652, 2021829, 10024, 20292]; Consejo Nacional de Ciencia y Tecnologia [A1-S-14968]	IPN, PLAYCO Programa de Planeacion Ambiental y Conservacion-CIBNOR, CIBNOR; Consejo Nacional de Ciencia y Tecnologia(Consejo Nacional de Ciencia y Tecnologia (CONACyT))	This project was funded by institutional projects (SIP 20221652, 2021829 of IPN, 10024 PLAYCO Programa de Planeacion Ambiental y Conservacion-CIBNOR, 20292 CIBNOR) and by the Consejo Nacional de Ciencia y Tecnologia (Ciencia basica A1-S-14968).	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J	Wang, ZH; Peng, L; Xie, CL; Wang, WT; Zhang, YN; Xiao, LJ; Tang, YL; Yang, YF				Wang, Zhaohui; Peng, Liang; Xie, Changliang; Wang, Wenting; Zhang, Yuning; Xiao, Lijuan; Tang, Yali; Yang, Yufeng			Metabarcoding of harmful algal bloom species in sediments from four coastal areas of the southeast China	FRONTIERS IN MICROBIOLOGY			English	Article						eukaryotic algae; 18S rDNA; human activities; resting stages; the Yellow Sea; the East China Sea	AZADINIUM-POPORUM DINOPHYCEAE; SURFACE SEDIMENTS; MOLECULAR CHARACTERIZATION; ALEXANDRIUM-FUNDYENSE; KARLODINIUM-VENEFICUM; DINOFLAGELLATE CYSTS; RESTING STAGES; PHYTOPLANKTON; SEA; MORPHOLOGY	In the past three decades, harmful algal blooms (HAB) have become more frequent and widespread in southeast Chinese sea areas. Resting stages are regarded as the "seed bank" of algal blooms, and play an important role in initiating HABs. The distribution of resting stages in sediments especially those of HAB species can make good predictions about the potential risk of future blooms, however with limited reports. In this study, surface sediment samples were collected in the four sea areas along the southeast Chinese coasts, including Dafeng Port (DF) in the southern Yellow Sea, Xiangshan Bay (XS), Funing Bay (FN), and Dongshan Bay (DS) in the East China Sea. Diversity and community structure of eukaryotic microalgae in surface sediments were assessed by metabarcoding V4 region of the 18S rDNA, focusing on the distribution of HAB species. Biogenic elements including total organic carbon (TOC), total nitrogen (TN), total phosphorus (TP), biogenic silicon (BSi), and moisture content (MC) were analyzed. A total of 454 eukaryotic algal OTUs were detected, which belonged to 31 classes of 9 phyla. Altogether 149 algal species were detected in this study, and 59 taxa have been reported to form resting stages. Eukaryotic algal community was similar in XS, FN and DS of the East China Sea, which were predominated by dinoflagellates. However, algal community was different in DF of the Yellow Sea, and characterized by the dominance of chrysophytes and low OTU richness. The distribution of most abundant HAB species showed positive correlations with TN, BSi, and TOC, suggesting that eutrophication and consequent increase in diatom productivity may have a significant influence on the distribution of HAB species and facilitate the occurrence of HABs. Furthermore, HAB species occurred more abundantly and widely in FN. Our results suggest high potential risks of HABs in the southeast Chinese coast especially in Funing Bay.	[Wang, Zhaohui; Peng, Liang; Xie, Changliang; Wang, Wenting; Zhang, Yuning; Xiao, Lijuan; Tang, Yali; Yang, Yufeng] Jinan Univ, Coll Life Sci & Technol, Guangzhou, Peoples R China; [Yang, Yufeng] Southern Marine Sci & Engn Guangdong Lab, Zhuhai, Peoples R China	Jinan University	Xiao, LJ; Tang, YL (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Guangzhou, Peoples R China.	tljxiao@jnu.edu.cn; litangyali@163.com	Zhang, Yuning/E-1449-2011		Science and Technology Basic Resources Investigation Program of China; National Natural Science Foundation of China [2018FY100200]; Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) [42076141];  [311021006]	Science and Technology Basic Resources Investigation Program of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai); 	This study was supported by the Science and Technology Basic Resources Investigation Program of China (No. 2018FY100200), the National Natural Science Foundation of China (No. 42076141), and Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) (No. 311021006).	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Microbiol.	AUG 31	2022	13								999886	10.3389/fmicb.2022.999886	http://dx.doi.org/10.3389/fmicb.2022.999886			19	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	6Q6RO	36118226	Green Published, gold			2025-03-11	WOS:000891739800001
J	Tang, YZ; Deng, YY; Yue, CX; Chai, ZY; Shang, LX				Tang, Ying Zhong; Deng, Yunyan; Yue, Caixia; Chai, Zhaoyang; Shang, Lixia			Deficiency of nitrogen but not phosphorus triggers the life cycle transition of the dinoflagellate <i>Scrippsiella acuminata</i> from vegetative growth to resting cyst formation	HARMFUL ALGAE			English	Article						Resting cyst; Harmful algal blooms (HABs); Cell cycle; CyclinB; CDK1; Scrippsiella acuminata	HARMFUL ALGAL BLOOMS; CELL-CYCLE; PHOTOSYNTHETIC APPARATUS; B HOMOLOG; RED TIDE; DINOPHYCEAE; TEMPERATURE; ENCYSTMENT; PHOSPHATE; NUTRIENTS	Nitrogen (N) and phosphorus (P) are essential elements for algal growth. When N and P are deficient, dinoflagellates will take a series of measures to achieve population continuation including formation of resting cysts, an important ecological strategy of dinoflagellates that plays a key role in the initiation and termination of harmful algal blooms (HABs). How the deficiency of N and P affects algal growth and cyst formation has been investigated in some dinoflagellate species, but how it affects the life cycle transition in dinoflagellates has been poorly understood. In this study, we further explored the effect of N and P deficiency on the algal growth and resting cyst production in the cosmopolitan HABs-causing species Scrippsiella acuminata via refining the N and P concentration gradients. Further, we tracked the expression patterns of one CyclinB and one CDKI genes of S. acuminata at different growth stages under three deficiency concentrations (1/1000 dilutions of N, P, and both N and P). The results suggest that N deficiency always triggered the cyst formation but P deficiency mainly inhibited the vegetative growth instead of inducing cyst formation. We also observed the highest cyst production when S. acuminata was cultured in the f/2-Si medium that was a one-thousandth dilution of N and P (N similar to 0.882 mu M; P similar to 0.0362 mu M). Our results for the expressions of CyclinB and CDKI were well consistent with the results of algal growth and cyst formation at different deficiencies of N and P in terms of that higher expressions of these two genes were corresponding to higher rates of vegetative cell growth, while their expressions in resting cysts maintained to be moderate but significantly lower than that in fast-growing vegetative cells. Although we are still not sure whether the changing expressions of the two genes did regulate the transition of life cycle (i.e. cyst formation), or happened as parallels to the expressions of other truly regulating genes, our observations are surely inspirational for further investigations on the genetic regulation of life cycle transition in dinoflagellates. Our work will provide clues to probe the physiological and molecular mechanisms underlying the nutrient deficiency-induced alternation between life cycle stages in dinoflagellates.	[Tang, Ying Zhong; Deng, Yunyan; Yue, Caixia; Chai, Zhaoyang; Shang, Lixia] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Tang, Ying Zhong; Deng, Yunyan; Chai, Zhaoyang; Shang, Lixia] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Tang, Ying Zhong; Deng, Yunyan; Chai, Zhaoyang; Shang, Lixia] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Tang, Ying Zhong; Yue, Caixia] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ; Deng, YY (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn; yunyandeng@qdio.ac.cn	Yue, caixia/HHN-3747-2022; Chai, Zhaoyang/F-7485-2017		Key Deployment Project of Center for Ocean Mega -Research of Science, Chinese Academy of Sciences [COMS2019Q09]; National Science Foundation of China [42176207, 41976134]	Key Deployment Project of Center for Ocean Mega -Research of Science, Chinese Academy of Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC))	This research was funded by the Key Deployment Project of Center for Ocean Mega -Research of Science, Chinese Academy of Sciences (Grant No. COMS2019Q09) and the National Science Foundation of China (Grant Nos. 42176207 and 41976134) .	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J	Dashtgard, SE; Wang, AH; Pospelova, V; Wang, PL; La Croix, A; Ayranci, K				Dashtgard, Shahin E.; Wang, Aihua; Pospelova, Vera; Wang, Pei-Ling; La Croix, Andrew; Ayranci, Korhan			Salinity indicators in sediment through the fluvial-to-marine transition (Fraser River, Canada)	SCIENTIFIC REPORTS			English	Article							INCLINED HETEROLITHIC STRATIFICATION; DINOFLAGELLATE CYSTS; SPATIAL-DISTRIBUTION; ORGANIC-CARBON; DELTA FRONT; ESTUARY; SAND; MASSACHUSETTS; MORPHOLOGY; TRANSPORT	Many sediment attributes have been proposed as proxies for determining salinity conditions under which sediment is deposited, and six attributes (Sr/Ba-HAc, Sr/Ba-NH4Ac, delta C-13(org), C/N, and the relative abundances and concentrations of dinoflagellate cysts) are compared here. In this paper, sediment attributes from the Fraser River Delta, Canada and surrounding coastal areas are compared by depositional position along the fluvial-to-marine transition, by salinity, and by sedimentological characteristics. Along the fluvial-to-marine transition, most attributes exhibit distinct trends between parts of the river that experience sustained marine water (saltwater) influence over seasonal and tidal timeframes, and parts that experience only freshwater or periodic saltwater influence. No attributes are reliable indicators of depositional position where saltwater incursion is short lived or where water is fresh. Where marine influence is sustained, Sr/Ba-HAc and Sr/Ba-NH4Ac are the most reliable positional indicators along the fluvial-to-marine transition. When compared strictly to salinity, Sr/Ba-HAc, Sr/Ba-NH4Ac, and delta C-13(org) all correlate predictably except in delta front and prodelta settings. Our data show that all six sediment attributes are heavily impacted by river-derived sedimentation, and it is not appropriate to compare values from strongly river-influenced settings (e.g., deltas) with those from weakly river-influenced settings (e.g., bays and estuaries).	[Dashtgard, Shahin E.] Simon Fraser Univ, Earth Sci, Burnaby, BC V5A 1S6, Canada; [Wang, Aihua] China Geol Survey, Nanjing Ctr, Nanjing 210016, Peoples R China; [Pospelova, Vera] Univ Minnesota, Earth & Environm Sci, Minneapolis, MN 55455 USA; [Wang, Pei-Ling] Natl Taiwan Univ, Inst Oceanog, Taipei, Taiwan; [La Croix, Andrew] Univ Waikato, Sch Sci, Earth & Environm Sci, Hamilton 3240, New Zealand; [Ayranci, Korhan] King Fahd Univ Petr & Minerals, Petr Engn & Geosci, Dhahran 31261, Saudi Arabia	Simon Fraser University; China Geological Survey; Nanjing Center, China Geological Survey; University of Minnesota System; University of Minnesota Twin Cities; National Taiwan University; University of Waikato; King Fahd University of Petroleum & Minerals	Dashtgard, SE (通讯作者)，Simon Fraser Univ, Earth Sci, Burnaby, BC V5A 1S6, Canada.	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J	Rodríguez-Villegas, C; Díaz, PA; Salgado, P; Tomasetti, SJ; Díaz, M; Marín, SL; Baldrich, AM; Niklitschek, E; Pino, L; Matamala, T; Espinoza, K; Figueroa, R				Rodriguez-Villegas, Camilo; Diaz, Patricio A.; Salgado, Pablo; Tomasetti, Stephen J.; Diaz, Manuel; Marin, Sandra L.; Baldrich, Angela M.; Niklitschek, Edwin; Pino, Loreto; Matamala, Thamara; Espinoza, Katherine; Figueroa, Rosa, I			The role of physico-chemical interactions in the seasonality of toxic dinoflagellate cyst assemblages: The case of the NW Patagonian fjords system	ENVIRONMENTAL POLLUTION			English	Article						Resting cysts; Saxitoxins; Yessotoxins; Redox potential; Harmful algal blooms; Seasonality	HARMFUL ALGAL BLOOMS; SOUTHERN CHILE; RESTING CYSTS; ALEXANDRIUM-CATENELLA; SURFACE SEDIMENTS; DINOPHYCEAE; ABUNDANCE; YESSOTOXINS; SPP.; BAY	Harmful algal blooms (HABs) are recurrent in the NW Patagonia fjords system and their frequency has increased over the last few decades. Outbreaks of HAB species such as Alexandrium catenella, a causal agent of paralytic shellfish poisoning, and Protoceratium reticulatum, a yessotoxins producer, have raised considerable concern due to their adverse socioeconomic consequences. Monitoring programs have mainly focused on their planktonic stages, but since these species produce benthic resting cysts, the factors influencing cyst distributions are increasingly gaining recognition as potentially important to HAB recurrence in some regions. Still, a holistic understanding of the physico-chemical conditions influencing cyst distribution in this region is lacking, espe-cially as it relates to seasonal changes in drivers of cyst distributions, as the characteristics that favor cyst preservation in the sediment may change through the seasons. In this study, we analyzed the physico-chemical properties of the sediment (temperature, pH, redox potential) and measured the bottom dissolved oxygen levels in a "hotspot" area of southern Chile, sampling during the spring and summer as well as the fall and winter, to determine the role these factors may play as modulators of dinoflagellate cyst distribution, and specifically for the cysts of A. catenella and P. reticulatum. A permutational analysis of variance (PERMANOVA) showed the significant effect of sediment redox conditions in explaining the differences in the cyst assemblages between spring-summer and fall-winter periods (seasonality). In a generalized linear model (GLM), sediment redox po-tential and pH were associated with the highest abundances of A. catenella resting cysts in the spring-summer, however it was sediment temperature that most explained the distribution of A. catenella in the fall-winter. For P. reticulatum, only spring-summer sediment redox potential and temperature explained the variation in cyst abundances. The implications of environmental (physico-chemical) seasonality for the resting cysts dy-namics of both species are discussed.	[Rodriguez-Villegas, Camilo; Baldrich, Angela M.] Univ Los Lagos, Programa Doctorado Ciencias Menc Conservac & Mane, Camino Chinquihue Km 6, Puerto Montt, Chile; [Rodriguez-Villegas, Camilo; Diaz, Patricio A.; Baldrich, Angela M.; Niklitschek, Edwin] Univ Los Lagos, Ctr I Mar, Casilla 557, Puerto Montt, Chile; [Rodriguez-Villegas, Camilo; Diaz, Patricio A.; Baldrich, Angela M.] Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt, Chile; [Salgado, Pablo] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Enrique Abello 0552, Chile; [Tomasetti, Stephen J.] Hamilton Coll, Environm Studies Program, Clinton, NY 13323 USA; [Diaz, Manuel] Univ Austral Chile, Programa Invest Pesquera, Puerto Montt, Chile; [Diaz, Manuel; Marin, Sandra L.] Univ Austral Chile, Inst Acuicultura, Puerto Montt, Chile; [Pino, Loreto; Matamala, Thamara; Espinoza, Katherine] Univ Austral Chile, Inst Acuicultura, Programa Invest Pesquera, Puerto Montt, Chile; [Figueroa, Rosa, I] Inst Espanol Oceanog IEO CSIC, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain	Universidad de Los Lagos; Universidad de Los Lagos; Universidad de Los Lagos; Instituto de Fomento Pesquero (Valparaiso); Hamilton College; Universidad Austral de Chile; Universidad Austral de Chile; Universidad Austral de Chile; Spanish Institute of Oceanography	Rodríguez-Villegas, C (通讯作者)，Univ Los Lagos, Ctr I Mar, Casilla 557, Puerto Montt, Chile.	camilorodriguezvillegas@gmail.com	Díaz, Patricio/B-8128-2018; Díaz, Manuel/AAM-6225-2021; Salgado, Pablo/KMA-0636-2024; Baldrich, Angela M./AAC-8054-2022; Niklitschek, Edwin/A-7066-2008; Figueroa, Rosa/M-7598-2015; Rodriguez Villegas, Camilo/AAB-8563-2022	Baldrich, Angela M./0000-0002-2624-7357; Pino Chandia, Loreto/0000-0002-5784-2730; Niklitschek, Edwin/0000-0001-5561-3494; Figueroa, Rosa/0000-0001-9944-7993; Tomasetti, Stephen/0000-0001-6947-5141; Rodriguez Villegas, Camilo/0000-0002-1429-2775	Fisheries Under secretary of Chile by Fondo Investigacion Pesquera y Acuicultura project [2016-02-ID 4728 _53_ LQ16]; Centro de Biotecnologa y Bioingeniera (CeBiB) [FB0001]; Spanish Ministry of Science and Innovation; European Community (FEDER) [DIANAS-CTM2017-86066-R]; Universidad de Los Lagos; Innovation Agency of the Xunta de Galicia (GAIN) [GRC-VGO-HAB IN607A-2019/04]	Fisheries Under secretary of Chile by Fondo Investigacion Pesquera y Acuicultura project; Centro de Biotecnologa y Bioingeniera (CeBiB); Spanish Ministry of Science and Innovation(Ministry of Science and Innovation, Spain (MICINN)Spanish Government); European Community (FEDER)(European Union (EU)); Universidad de Los Lagos; Innovation Agency of the Xunta de Galicia (GAIN)	This work was funded by the Fisheries Under secretary of Chile by Fondo Investigacion Pesquera y Acuicultura project [FIPA No 2016-02-ID 4728 _53_ LQ16] and by the Centro de Biotecnologa y Bioingeniera (CeBiB) (PIA project FB0001, ANID, Chile) . Rosa I. Figueroa was funded by a national project from the Spanish Ministry of Science and Innovation and the European Community (FEDER) (Project DIANAS-CTM2017-86066-R) and a grant for Galician Networks of Excellence (GRC-VGO-HAB IN607A-2019/04) from the Innovation Agency of the Xunta de Galicia (GAIN) . The authors also acknowledge the Universidad Austral de Chile for the human and technical support of the oceanographic campaign. Camilo Rodrguez Villegas had a fellowship from Universidad de Los Lagos.	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Pollut.	OCT 15	2022	311								119901	10.1016/j.envpol.2022.119901	http://dx.doi.org/10.1016/j.envpol.2022.119901		AUG 2022	19	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	4W9XY	35963388	Green Published			2025-03-11	WOS:000860508700003
J	Lin, SJ; Yu, LY; Wu, XM; Li, MZ; Zhang, YQ; Luo, H; Li, HF; Li, TC; Li, L				Lin, Senjie; Yu, Liying; Wu, Xiaomei; Li, Meizhen; Zhang, Yaqun; Luo, Hao; Li, Hongfei; Li, Tangcheng; Li, Ling			Active meiosis during dinoflagellate blooms: A 'sex for proliferation' hypothesis	HARMFUL ALGAE			English	Article						Sexual reproduction; Dinoflagellate bloom; Sex for encystment (SXE); Sex for proliferation (SXP); Meiosis genes	DOUBLE-STRAND BREAKS; LIFE-CYCLE; PFIESTERIA-PISCICIDA; REPRODUCTION; DINOPHYCEAE; CYSTS; PHYTOPLANKTON; SEXUALITY; EVOLUTION; ANCIENT	In dinoflagellates, sexual reproduction is best known to be induced by adverse environmental conditions and culminate in encystment for survival ('sex for encystment'). Although increasing laboratory observations indicate that sex can lead to production of vegetative cells bypassing encystment, the occurrence of this alternative pathway in natural populations and its ecological roles remain poorly understood. Here we report evidence that sex in dinoflagellates can potentially be an instrument for bloom proliferation or extension. By bloom meta-transcriptome profiling, we documented elevated expression of meiosis genes in two evolutionarily distinct species (Prorocentrum shikokuense and Karenia mikimotoi) during bloom, a timing unexpected of the 'sex for encystment' scenario. To link these genes to meiosis, we induced encystment and cyst germination in the cyst -forming species Scrippsiella acuminata, and found that five of these genes were upregulated during cyst germi-nation, when meiosis occurs. Integrating data from all three species revealed that SPO11, MND1, and DMC1 were likely common between cyst-forming and non-encysting sex in dinoflagellates. Furthermore, flow cytometric analyses revealed consecutive rounds of DNA halving during blooms of P. shikokuense and K. mikimotoi, evidencing meiosis. These data provided novel evidence that sexual reproduction in dinoflagellates might serve to promote cell proliferation, and along with the consequent enhancement of genetic diversity facilitating resistance against pathogens and environmental stress, to boost or extend a bloom ('sex for proliferation'). The putative meiosis-specific genes and insights reported here will prove to be helpful for rigorously testing the hypothesis and addressing whether the two modes of sex are genetically predisposed (i.e. species-specific) or environmentally induced (switchable within species), and if the latter what triggers the switch.	[Lin, Senjie] Univ Connecticut, Dept Marine Sci, Groton, CT 06340 USA; [Yu, Liying; Wu, Xiaomei; Li, Meizhen; Zhang, Yaqun; Luo, Hao; Li, Hongfei; Li, Tangcheng; Li, Ling] Xiamen Univ, Coll Ocean & Earth Sci, State Key Lab Marine Environm Sci, Xiamen 361102, Fujian, Peoples R China; [Yu, Liying] Fujian Med Univ, Cent Lab, Affiliated Hosp 2, Quanzhou 362000, Peoples R China; [Li, Meizhen] McGill Univ, Dept Biol, Montreal, PQ H3A 1B1, Canada; [Zhang, Yaqun] Chinese Acad Fishery Sci, Key Lab Aquat Genom, Minist Agr & Rural Affairs, Beijing 100141, Peoples R China; [Zhang, Yaqun] Chinese Acad Fishery Sci, Beijing Key Lab Fishery Biotechnol, Beijing 100141, Peoples R China; [Li, Hongfei] Zhejiang Ocean Univ, Natl Engn Res Ctr Marine Aquaculture, Zhoushan 316022, Zhejiang, Peoples R China; [Li, Tangcheng] Shantou Univ, Inst Marine Sci, Coll Sci, Shantou 515063, Guangdong, Peoples R China; [Li, Tangcheng] Shantou Univ, Biol Dept, Shantou 515063, Guangdong, Peoples R China	University of Connecticut; Xiamen University; Fujian Medical University; Ministry of Agriculture & Rural Affairs; Chinese Academy of Fishery Sciences; Chinese Academy of Fishery Sciences; Zhejiang Ocean University; Shantou University; Shantou University	Lin, SJ (通讯作者)，Univ Connecticut, Dept Marine Sci, Groton, CT 06340 USA.	senjie.lin@uconn.edu	Lin, Senjie/A-7466-2011; Luo, Hao/JEZ-3644-2023; Li, Zilin/AAB-1216-2019	Wu, Xiaomei/0000-0002-7425-8755; Lin, Senjie/0000-0001-8831-6111	Gordon and Betty Moore Foundation grant GBMF [4980.01]; National Natural Science Foundation of China [41330959]; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) [2018SDKJ0406-3]	Gordon and Betty Moore Foundation grant GBMF; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao)	This work was supported by the Gordon and Betty Moore Foundation grant GBMF grant #4980.01, the National Natural Science Foundation of China grant #41330959, and the Marine S & T Fund of Shandong Province for Pilot National Laboratory for Marine Science andTechnology (Qingdao) grant #2018SDKJ0406-3.	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J	Wilson, JM; Erazo, N; Connors, E; Chamberlain, EJ; Clements, SM; Carter, ML; Smith, JE; Bowman, JS				Wilson, Jesse M.; Erazo, Natalia; Connors, Elizabeth; Chamberlain, Emelia J.; Clements, Samantha M.; Carter, Melissa L.; Smith, Jennifer E.; Bowman, Jeff S.			Substantial microbial community shifts in response to an exceptional harmful algal bloom in coastal Southern California	ELEMENTA-SCIENCE OF THE ANTHROPOCENE			English	Article						Phytoplankton bloom; Red tide; Microbial community; Carbon cycling	EARLY-WARNING SIGNALS; OPERON COPY NUMBER; RED TIDE; ALEXANDRIUM DINOPHYCEAE; CYST FORMATION; HIROSHIMA BAY; DINOFLAGELLATE; DYNAMICS; ASSEMBLAGES; BACTERIUM	Phytoplankton blooms create organic matter that stimulates entire marine ecosystems, including other components of the microbial community. How the ecosystem responds varies depending on the intensity, duration, and composition of the bloom. When the bloom has a direct or indirect negative impact on the ecosystem, it is termed a harmful algal bloom (HAB). HAB frequency is expected to increase in response to changing oceanic conditions and coastal nutrient supply. Characterizing the response of the bacterial and archaeal communities to HABs will improve our understanding of the ecological impacts of these phenomena. We utilized time series of chlorophyll a, phaeophytin, dissolved oxygen, flow cytometry cell counts, and microbial community structure (assessed via 16S rRNA gene sequences) maintained by several observing programs to investigate how the microbial community was affected by an exceptional bloom of Lingulodinium polyedra in coastal Southern California. These multi-year datasets allowed us to compare the microbial community response to past events, such as a smaller L. polyedra bloom the previous year. We demonstrated that the bacterial and archaeal response to the 2020 bloom was unique taxonomically, with many novel heterotrophs, and higher trophic state variance. The measured heterotrophic response to the bloom resulted in massive oxygen drawdown and may have impacted the length of the bloom and contributed to a secondary diatom bloom following the main HAB event. Taken together, these data illustrate how the massive 2020 L. polyedra bloom created unique ecological conditions for coastal Southern California.	[Wilson, Jesse M.; Erazo, Natalia; Connors, Elizabeth; Chamberlain, Emelia J.; Clements, Samantha M.; Carter, Melissa L.; Smith, Jennifer E.; Bowman, Jeff S.] Univ Calif San Diego, Scripps Inst Oceanog, San Diego, CA 92103 USA; [Bowman, Jeff S.] Univ Calif San Diego, Ctr Microbiome Innovat, San Diego, CA 92103 USA; [Bowman, Jeff S.] Univ Calif San Diego, Ctr Marine Biodivers & Conservat, San Diego, CA 92103 USA	University of California System; University of California San Diego; Scripps Institution of Oceanography; University of California System; University of California San Diego; University of California System; University of California San Diego	Wilson, JM (通讯作者)，Univ Calif San Diego, Scripps Inst Oceanog, San Diego, CA 92103 USA.	jmwilson@ucsd.edu		Connors, Elizabeth/0000-0002-4992-4218; Bowman, Jeff/0000-0002-8811-6280; Erazo, Natalia G./0000-0002-7498-0860; Chamberlain, Emelia Janthina/0000-0003-2218-3488	National Oceanic and Atmospheric Administration [NOAA NA16NOS0120022, NA11NOS120029, NA17RJ1231]; MacArthur Foundation; Simons Foundation Early Career Marine Microbial Ecology and Evolution award	National Oceanic and Atmospheric Administration(National Oceanic Atmospheric Admin (NOAA) - USA); MacArthur Foundation; Simons Foundation Early Career Marine Microbial Ecology and Evolution award	The Southern California Coastal Ocean Observing Harmful Algal Bloom Monitoring Program was supported by the National Oceanic and Atmospheric Administration (NOAA NA16NOS0120022, NA11NOS120029, and NA17RJ1231). Funding for the McGowan Plankton and Chlorophyll Program was provided by private donors and the MacArthur Foundation. This work was also supported by a Simons Foundation Early Career Marine Microbial Ecology and Evolution award to JSB.	Adachi M, 2004, INT J SYST EVOL MICR, V54, P1687, DOI 10.1099/ijs.0.03029-0; Adachi M, 1999, MAR ECOL PROG SER, V191, P175, DOI 10.3354/meps191175; Allen W. 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Anthrop.	AUG 12	2022	10	1							1	10.1525/elementa.2021.00088	http://dx.doi.org/10.1525/elementa.2021.00088			21	Environmental Sciences; Meteorology & Atmospheric Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Meteorology & Atmospheric Sciences	4L4XZ		gold			2025-03-11	WOS:000852634600001
J	Li, J; Ruan, YF; Wu, RB; Cui, YS; Shen, JC; Mak, YL; Wang, Q; Zhang, K; Yan, M; Wu, JX; Lam, PKS				Li, Jing; Ruan, Yuefei; Wu, Rongben; Cui, Yongsheng; Shen, Jincan; Mak, Yim Ling; Wang, Qi; Zhang, Kai; Yan, Meng; Wu, Jiaxue; Lam, Paul K. S.			Occurrence, spatial distribution, and partitioning behavior of marine lipophilic phycotoxins in the Pearl River Estuary, South China	ENVIRONMENTAL POLLUTION			English	Article						Partitioning behavior; Marine lipophilic phycotoxins; Seawater; Particulate organic matter; Sediment	AZADINIUM-POPORUM DINOPHYCEAE; MICROBIAL COMMUNITY STRUCTURE; HARMFUL ALGAL BLOOMS; ENVIRONMENTAL-FACTORS; DEVELOPMENTAL TOXICITY; DINOFLAGELLATE CYSTS; AZASPIRACID PROFILE; SHELLFISH TOXINS; YELLOW SEA; PHYTOPLANKTON	The occurrence, spatial distribution, and partitioning behavior of 17 marine lipophilic phycotoxins (MLPs) in surface and bottom seawater, particulate organic matter (POM), and surface sediment from the Pearl River Estuary (PRE) were investigated to understand current contamination and the potential risks to marine ecosystems in this region. Nine MLPs were detected, including azaspiracid1- 3, gymnodimine, okadaic acid, dinophysistoxin 1 - 2, pectenotoxin2 (PTX2), and homoyessotoxin, with Sigma 17MLP concentrations ranging 545-12,600 pg L-1 and 619 8,800 pg L-1 in surface and bottom seawater, respectively; 0-294 ng g(-1) and 0.307-300 ng g(-1) dry weight (dw) in surface and bottom POM, respectively; and 3.90-982 pg g(-1) dw in surface sediment. Lower S17MLP levels in the seawater were found at the mouth of the PRE, and gradually increased with increasing distance offshore. According to the calculated partition coefficient, the affinity of MLPs for the aquatic environment components was as follows (from highest to lowest): POM > seawater > sediment. Overall, the distribution and migration of MLPs in the PRE may depend on partition coefficients, the organic carbon fraction, and environmental factors.	[Li, Jing; Ruan, Yuefei; Wu, Rongben; Mak, Yim Ling; Wang, Qi; Zhang, Kai; Yan, Meng; Lam, Paul K. S.] City Univ Hong Kong, State Key Lab Marine Pollut SKLMP, Hong Kong, Peoples R China; [Li, Jing; Ruan, Yuefei; Wu, Rongben; Mak, Yim Ling; Wang, Qi; Zhang, Kai; Yan, Meng; Lam, Paul K. S.] City Univ Hong Kong, Dept Chem, Hong Kong, Peoples R China; [Li, Jing; Ruan, Yuefei; Wu, Rongben; Cui, Yongsheng; Wang, Qi; Zhang, Kai; Yan, Meng; Wu, Jiaxue; Lam, Paul K. S.] Southern Marine Sci & Engn Guangdong Lab Zhuhai, Zhuhai 519080, Peoples R China; [Ruan, Yuefei; Wang, Qi; Yan, Meng] City Univ Hong Kong, Shenzhen Res Inst, Res Ctr Oceans & Human Hlth, Shenzhen 518057, Peoples R China; [Cui, Yongsheng; Wu, Jiaxue] Sun Yat Sen Univ, Sch Marine Sci, Zhuhai 519082, Peoples R China; [Shen, Jincan] Shenzhen Acad Inspect Quarantine, Food Inspect & Quarantine Technol Ctr Shenzhen Cu, Key Lab Detect Technol R&D Food Safety, Shenzhen 518026, Peoples R China; [Lam, Paul K. S.] Hong Kong Metropolitan Univ, Off President, 30 Good Shepherd St, Hong Kong, Peoples R China; [Li, Jing] Shenzhen Inst Informat Technol, Dept Transportat & Environm, Shenzhen 518172, Peoples R China	City University of Hong Kong; City University of Hong Kong; Southern Marine Science & Engineering Guangdong Laboratory; Southern Marine Science & Engineering Guangdong Laboratory (Zhuhai); City University of Hong Kong; Shenzhen Research Institute, City University of Hong Kong; Sun Yat Sen University; Shenzhen Academy of Inspection & Quarantine; Hong Kong Metropolitan University; Shenzhen Institute of Information Technology	Ruan, YF (通讯作者)，City Univ Hong Kong, State Key Lab Marine Pollut SKLMP, Hong Kong, Peoples R China.; Ruan, YF (通讯作者)，City Univ Hong Kong, Dept Chem, Hong Kong, Peoples R China.	yruan8@cityu.edu.hk	Yan, Meng/GWP-5833-2022; zhang, kai/C-6432-2013; LI, Jing/AGY-5995-2022; Ruan, Yuefei/R-1323-2018; LAM, Kwan Sing Paul/B-9121-2008; Wang, Qi/ABF-4155-2020	Cui, Yongsheng/0009-0006-6127-9895; Ruan, Yuefei/0000-0003-4696-5708; LAM, Kwan Sing Paul/0000-0002-2134-3710; Wang, Qi/0000-0002-3156-9246; LI, Jing/0000-0001-7467-9667; WU, Rongben/0000-0002-1860-3294	Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) [311020004]; Science, Technology, and Innovation Commission of Shenzhen Municipality [JCYJ20190812155805559]; Research Support Project of Shenzhen Institute of Information Technology [SZIIT2022KJ074]	Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai); Science, Technology, and Innovation Commission of Shenzhen Municipality; Research Support Project of Shenzhen Institute of Information Technology	The present work was supported by the Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) (No. 311020004), the Science, Technology, and Innovation Commission of Shenzhen Municipality (No. JCYJ20190812155805559), and Research Support Project of Shenzhen Institute of Information Technology (No. SZIIT2022KJ074).	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Pollut.	OCT 1	2022	310								119875	10.1016/j.envpol.2022.119875	http://dx.doi.org/10.1016/j.envpol.2022.119875		AUG 2022	9	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	4U6YR	35926733				2025-03-11	WOS:000858937500005
J	Zonneveld, KAF; Grotheer, H; Versteegh, GJM				Zonneveld, Karin A. F.; Grotheer, Hendrik; Versteegh, Gerard J. M.			Dinoflagellate cysts production, excystment and transport in the upwelling off Cape Blanc (NW Africa)	FRONTIERS IN MARINE SCIENCE			English	Article						dinoflagellate cysts; fluxes; succession; excystment; dispersal; ecology; upwelling	SEDIMENT TRAP; ENVIRONMENTAL-CHANGE; SEASONAL PRODUCTION; SINKING VELOCITY; RESTING CYSTS; COASTAL; VARIABILITY; DIATOM; HARMFUL; BLOOMS	To extend the understanding of dinoflagellate cysts production, excystment and vertical/lateral transport in the water column, we compared upper water cyst export production with cysts associations and concentrations in the subsurface nepheloid layer, bottom nepheloid layer and deeper water column during active upwelling off Cape Blanc (NW Africa) in August 2020. Export production was collected by two drifting trap surveys; DTS1 in an active upwelling cell for 4 days and DTS2 in an offshore drifting upwelling filament for 2 days. Subsurface, bottom nepheloid layers and deeper waters were sampled by in-situ pumps along two transects perpendicular to the shelf break. During DTS1, light limitation hampered phytoplankton production which might have influenced cyst production negatively due to up- and downward movement of water masses. Cyst export production increased at the rim of the upwelling cell. For DTS2, upwelling filament cyst export production was up to 3 times lower than that of DTS1. Echinidinium delicatum had highest relative and absolute abundances in the active upwelling, Echinidinium zonneveldiae and Bitectatodinium spongium in the upwelling filament, and Impagidinium spp. and cysts of Gymnodinium microreticulatum/nolleri at the most distal stations. Comparison of concentrations of cysts with and without cell contents showed that the majority of cysts hatched before reaching deeper waters and displayed a dormancy period of less than 6 days. About 5% of the living cysts reached deeper waters and/or the ocean floor. Living cysts were transported offshore in the upwelling filament. In case ships exchange ballast waters in the studied region, they will take up laterally transported living cysts. Upon release of the ballast waters in the port of arrival, these cysts have the potential to become "invader species" that can threaten economy and/or health. Lateral transport of cysts was observed in the bottom nepheloid layer and in deeper waters (800 - 1200m depth) with a maximal extension of about 130km off the shelf break. Therefore, sediments in the region will contain a mixture of regionally and locally produced dinoflagellate cysts. This insight contributes to the improvement of environmental reconstructions of the Cape blanc upwelling system based on downcore cyst associations.	[Zonneveld, Karin A. F.; Grotheer, Hendrik; Versteegh, Gerard J. M.] Univ Bremen, Ctr Marine Environm Sci, MARUM, Bremen, Germany; [Zonneveld, Karin A. F.] Univ Bremen, Geosci Dept, Bremen, Germany; [Grotheer, Hendrik; Versteegh, Gerard J. M.] Helmholtz Zent Polar & Meeresforsch, Alfred Wegener Inst, Marine Geochem, Bremerhaven, Germany; [Versteegh, Gerard J. M.] Jacobs Univ Bremen, Dept Phys & Earth Sci, Bremen, Germany	University of Bremen; University of Bremen; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Jacobs University	Zonneveld, KAF (通讯作者)，Univ Bremen, Ctr Marine Environm Sci, MARUM, Bremen, Germany.; Zonneveld, KAF (通讯作者)，Univ Bremen, Geosci Dept, Bremen, Germany.	kzonneveld@marum.de	Versteegh, Gerardus/H-2119-2011; Grotheer, Hendrik/IST-3434-2023		Deutsche Forschungsgemeinschaft [GPF 18-1_18]; MARUM Cluster of Excellence "The Ocean Floor - Earth's Uncharted Interface"	Deutsche Forschungsgemeinschaft(German Research Foundation (DFG)); MARUM Cluster of Excellence "The Ocean Floor - Earth's Uncharted Interface"	The expedition was funded by the Deutsche Forschungsgemeinschaft GPF 18-1_18. The financial support in the form of scholarships and positions of participants of the cruise was provided by the Deutsche Forschungsgemeinschaft GPF 18-1_18 and the MARUM Cluster of Excellence "The Ocean Floor - Earth's Uncharted Interface".	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Mar. Sci.	JUL 26	2022	9								915755	10.3389/fmars.2022.915755	http://dx.doi.org/10.3389/fmars.2022.915755			21	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	3Q6PJ		gold			2025-03-11	WOS:000838350400001
J	Balaji-Prasath, B; Wang, Y; Su, YP; Lin, H; Feng, SL; Zheng, LW				Balaji-Prasath, Barathan; Wang, Ying; Su, Yu Ping; Lin, Hong; Feng, Shenglin; Zheng, Luwei			Distribution of dinoflagellate cysts in the modern sediments from the coastal aquaculture area and its adjacent oceanic shelf in southeast China	REGIONAL STUDIES IN MARINE SCIENCE			English	Article						Dinoflagellate cysts; Toxic species and heterotrophic; Surface sediment	ALEXANDRIUM-CATENELLA; SPATIAL-DISTRIBUTION; SURFACE SEDIMENTS; RESTING CYSTS; EAST-COAST; SEA; ASSEMBLAGES; HARBOR; BLOOM; GULF	Changes in nutrient loading due to coastal aquaculture and the targeted expansion of monitoring programs over the past few decades have amply demonstrated a marked increase in harmful algal blooms (HABs). In this study, viable dinoflagellate cyst composition and assemblages were investigated by evaluating and classifying their distribution patterns in surface sediments of the Fujian aquaculture coastal region of southeast China. The surface sediment at 5 stations during the spring and summer of 2019 to classify the dinoflagellate cysts present and identified 36 species representing six known and three uncertain taxa groups. The highest cyst was recorded at coastal station P11 in the spring (744.7 cysts g(-1) DW), while the lowest cyst was observed at coastal station P5 in spring (50.9 cysts g(-1) DW). The number and abundance of the heterotrophic species were greater than the autotrophic species, with the highest species volume belonging to the protoperidinioid group. We also detected potentially harmful algae bloom cysts that hold the potential to form their initial blooms in the sediments. It is important to note that six dinoflagellate cysts were found in the waters along the Fujian coast, as compared to historical data. Although the abundance of these cysts was not high, their presence indicates a potentially grave risk for toxic red tides. More alarmingly, these results suggest that seedbeds may trigger future blooms and outbreaks of toxic species in the present study area. (C) 2022 Elsevier B.V. All rights reserved.	[Balaji-Prasath, Barathan; Wang, Ying; Su, Yu Ping; Lin, Hong; Feng, Shenglin; Zheng, Luwei] Fujian Normal Univ, Coll Environm Sci & Engn, Fuzhou 350007, Peoples R China; [Balaji-Prasath, Barathan; Su, Yu Ping] Fujian Key Lab Pollut Control & Resource Recyclin, Fuzhou 350007, Peoples R China; [Balaji-Prasath, Barathan; Su, Yu Ping] Fujian Prov Res Ctr River & Lake Hlth Assessment, Fuzhou 350007, Peoples R China	Fujian Normal University	Su, YP (通讯作者)，Fujian Normal Univ, Coll Environm Sci & Engn, Fuzhou 350007, Peoples R China.	ypsu@fjnu.edu.cn	Su, Yu-Ping/J-7534-2012; Barathan, Balaji Prasath/AAE-3189-2022	Barathan, Dr. Balaji Prasath/0000-0001-7896-2208; Feng, Shenglin/0000-0002-6898-8022	National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation'' [2016YFE0202100]; Marine Red Tide Early Warning and Prevention in Pingtan coastal area [PT2021006]	National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation''; Marine Red Tide Early Warning and Prevention in Pingtan coastal area	This study was supported by National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation'' (2016YFE0202100) and Marine Red Tide Early Warning and Prevention in Pingtan coastal area (PT2021006). We also thank the crew of the research vessel china Marine Surveillance 203; and the chief Lirong Song for his organization during the cruises.	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Stud. Mar. Sci.	SEP	2022	55								102502	10.1016/j.rsma.2022.102502	http://dx.doi.org/10.1016/j.rsma.2022.102502		JUL 2022	11	Ecology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	4F0YQ					2025-03-11	WOS:000848242500003
J	Wang, ZH; Zhang, YN; Lei, MD; Ji, SH; Chen, JZ; Zheng, H; Tang, YL; Hu, R				Wang, Zhaohui; Zhang, Yuning; Lei, Mingdan; Ji, Shuanghui; Chen, Jiazhuo; Zheng, Hu; Tang, Yali; Hu, Ren			Distribution of Dinoflagellate Cysts in Surface Sediments From the Qingdao Coast, the Yellow Sea, China: The Potential Risk of Harmful Algal Blooms	FRONTIERS IN MARINE SCIENCE			English	Article						dinoflagellate cysts; sediment; harmful algal bloom; Qingdao Coast; the Yellow Sea; biogenic elements	AZADINIUM-POPORUM DINOPHYCEAE; JIAOZHOU BAY; PHYTOPLANKTON; ASSEMBLAGES; EUTROPHICATION; MORPHOLOGY; PHYLOGENY; DIVERSITY; ABUNDANCE; POLLUTION	Surface sediments were collected from three sea areas of the Qingdao coast, the Yellow Sea, China, namely, the inner Jiaozhou Bay, the Laoshan coast, and the Amphioxus Reserve area in November to December 2017. Dinoflagellate cysts were observed in the sediments, focusing on the distribution of toxic and harmful species. Contents of biogenic elements were analyzed to reveal their relationships to cysts. A total of 32 cyst taxa were identified, including 23 autotrophic and 9 heterotrophic taxa. Cyst concentrations ranged from 83.3 to 346.5 cysts/g D Wt with an average of 210.7 cysts/g D Wt. Generally, cysts of autotrophic dinoflagellates dominated in sediments from the Qingdao coast with proportions of 41.05%-90.25%. There were no dominant group in cyst assemblages; cysts of Protoperidiniaceae, Suessiales, and Calciodinelloideae showed similar contributions. Cyst assemblages were quite different in the inner Jiaozhou Bay reflected by the lower species richness, diversity, and cyst concentration. Results from the redundancy analysis (RDA) demonstrated the influence of biogenic elements on cyst assemblages, which explained well why the three sea areas with different degrees of human activities showed different dinocyst storages. Notably, 17 harmful algal bloom (HAB) dinoflagellate cysts were identified in this study, including cysts of those producing toxins that may damage human health and marine animals. Some of these cysts occurred widely and dominantly in this study, such as cysts of Gonyaulax spinifera, Azadinium trinitatum, Scrippsiella acuminata, and Biecheleria halophila, suggesting the potential risk of HABs in the Qingdao coastal area.	[Wang, Zhaohui; Zhang, Yuning; Lei, Mingdan; Ji, Shuanghui; Chen, Jiazhuo; Zheng, Hu; Tang, Yali; Hu, Ren] Jinan Univ, Coll Life Sci & Technol, Dept Ecol, Guangzhou, Peoples R China	Jinan University	Wang, ZH; Tang, YL; Hu, R (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Dept Ecol, Guangzhou, Peoples R China.	twzh@jnu.edu.cn; litangyali@163.com; thuren@jnu.edu.cn						Anderson DM, 2014, DEEP-SEA RES PT II, V103, P6, DOI 10.1016/j.dsr2.2013.10.002; Aydin H, 2015, MAR POLLUT BULL, V94, P144, DOI 10.1016/j.marpolbul.2015.02.038; Balkis N, 2011, J MAR BIOL ASSOC UK, V91, P771, DOI 10.1017/S0025315410000081; Bravo Isabel, 2014, Microorganisms, V2, P11; Castaneda-Quezada R, 2021, J MAR BIOL ASSOC UK, V101, P895, DOI 10.1017/S0025315421000795; Chikwililwa C, 2019, HARMFUL ALGAE, V85, DOI 10.1016/j.hal.2019.101626; Dong YL, 2020, ECOTOX ENVIRON SAFE, V191, DOI 10.1016/j.ecoenv.2020.110226; Dzhembekova N, 2018, BIOTECHNOL BIOTEC EQ, V32, P1507, DOI 10.1080/13102818.2018.1532816; Ellegaard M, 2018, BIOL REV, V93, P166, DOI 10.1111/brv.12338; 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Wang Zhao-hui, 2001, Marine Sciences (Beijing), V25, P47; Wang ZH, 2022, J OCEANOL LIMNOL, V40, P2322, DOI 10.1007/s00343-021-1200-0; Yao P, 2010, ESTUAR COAST SHELF S, V89, P234, DOI 10.1016/j.ecss.2010.07.003; Yu L, 2019, J ENVIRON MANAGE, V232, P499, DOI 10.1016/j.jenvman.2018.11.084; Yu R.C., 2020, OCEANOL LIMNOL SIN, V51, P768, DOI 10.11693/hyhz20200400127; Yuan HM, 2018, CONT SHELF RES, V171, P140, DOI 10.1016/j.csr.2018.11.004; [周健 Zhou Jian], 2020, [海洋环境科学, Marine Environmental Science], V39, P537; Zingone A, 2000, OCEAN COAST MANAGE, V43, P725, DOI 10.1016/S0964-5691(00)00056-9; Zinssmeister C, 2011, SYST BIODIVERS, V9, P145, DOI 10.1080/14772000.2011.586071; Zonneveld KAF, 2015, PALYNOLOGY, V39, P387, DOI 10.1080/01916122.2014.990115; Zou C, 2014, MAR POLLUT BULL, V89, P209, DOI 10.1016/j.marpolbul.2014.09.056	63	7	7	8	57	FRONTIERS MEDIA SA	LAUSANNE	AVENUE DU TRIBUNAL FEDERAL 34, LAUSANNE, CH-1015, SWITZERLAND		2296-7745		FRONT MAR SCI	Front. Mar. Sci.	JUN 22	2022	9								910327	10.3389/fmars.2022.910327	http://dx.doi.org/10.3389/fmars.2022.910327			11	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	3A4MJ		gold			2025-03-11	WOS:000827235600001
J	Zhong, YP; Su, YP; Zhang, DY; She, CX; Chen, NW; Chen, JX; Yang, H; Balaji-Prasath, B				Zhong, Yanping; Su, Yuping; Zhang, Dayi; She, Chenxing; Chen, Nengwang; Chen, Jixin; Yang, Hong; Balaji-Prasath, Barathan			The spatiotemporal variations in microalgae communities in vertical waters of a subtropical reservoir	JOURNAL OF ENVIRONMENTAL MANAGEMENT			English	Article						Microalgae community; Seasonal variations; Phosphorus release; Bottom water; Reservoir	PHYTOPLANKTON FUNCTIONAL-GROUPS; FRESH-WATER; ENVIRONMENTAL-FACTORS; DINOFLAGELLATE CYSTS; TEMPORAL VARIATION; SURFACE SEDIMENTS; DRIVING FACTORS; JIULONG RIVER; SHALLOW LAKE; PHOSPHORUS	The construction of cascade reservoirs increases eutrophication and exacerbates algal blooms and thus threatens water quality. Previous studies on the microalgae in reservoir have mainly focused on the spatio-temporal patterns of surface microalgae communities at the horizontal scale, while few studies have simultaneously considered the successions of microalgae in vertical profiles including the sediments and the effects of the nutrients release and microalgae in sediments on microalgae in upper waters. In this study, we investigated the effects of microalgae and physico-chemical parameters in waters and sediments on the successions of vertical microalgae communities in Xipi Reservoir, Southeast China. The seasonal variations in microalgae compositions decreased gradually from the surface water (the dominance of Cryptophyta and Chlorophyta in spring, Chlorophyta and Cyanophyta in summer, and relatively uniform in autumn and winter) to the sediment (the dominance of Bacillariophyta throughout the year), which was influenced by the variations of physico-chemical factors in different layers. The spatio-temporal variations in microalgae communities in waters was attributing to not only the heterogeneities of the stratification, and the physico-chemical factors such as water temperature, pH, and nutrient concentrations, especially for phosphorus in the water column, but also the combinations of phosphorus release and microalgae composition in sediments. Environmental changes would be especially problematic for microalgae groups such as Cryptophyta, Dinophyta and Chlorophyta that were sensitive to the changes of temperature and nutrients. Our results are helpful for an extensive understanding of the dynamics of microalgae communities in reservoir, and contribute to reservoir management for ensuring the safety of drinking water.	[Zhong, Yanping; Su, Yuping; She, Chenxing; Balaji-Prasath, Barathan] Fujian Normal Univ, Environm Sci & Engn Coll, Fuzhou 350007, Peoples R China; [Zhong, Yanping] Quanzhou Normal Univ, Coll Resources & Environm Sci, Quanzhou 362000, Peoples R China; [Chen, Nengwang; Chen, Jixin] Xiamen Univ, Coll Environm & Ecol, Fujian Prov Key Lab Coastal Ecol & Environm Studie, Xiamen 361005, Peoples R China; [Zhang, Dayi] Tsinghua Univ, Sch Environm, Beijing 100084, Peoples R China; [Yang, Hong] Univ Reading, Dept Geog & Environm Sci, Reading RG66AB, England	Fujian Normal University; Quanzhou Normal University; Xiamen University; Tsinghua University; University of Reading	Su, YP (通讯作者)，Fujian Normal Univ, Environm Sci & Engn Coll, Fuzhou 350007, Peoples R China.	ypsu@fjnu.edu.cn	ZHANG, DAYI/F-7858-2010; Su, Yu-Ping/J-7534-2012; Barathan, Balaji Prasath/AAE-3189-2022; Yang, Hong/C-1739-2008	Barathan, Dr. Balaji Prasath/0000-0001-7896-2208; Zhang, Dayi/0000-0002-1647-0408	National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation" [2016YFE0202100]; National Natural Science Foundation of China [41573075]; Research Projects of Water Resources Department of Fujian Province [SC-292, DH-1558, 21NB000922, MSK202202]; Research Projects of Water Resources Department of Fujian Province; Minjiang Scholar Program	National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation"; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Research Projects of Water Resources Department of Fujian Province; Research Projects of Water Resources Department of Fujian Province; Minjiang Scholar Program	We thank Xuejing You, Qiongli Mo, and Xingpeng Zhou for their assistance in microalgae sample collections and analyses. This study was supported by the National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation" (2016YFE0202100) , National Natural Science Foundation of China (41573075) , Research Projects of Water Resources Department of Fujian Province (SC-292, DH-1558, 21NB000922,MSK202202) , and Minjiang Scholar Program.	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Environ. Manage.	SEP 1	2022	317								115379	10.1016/j.jenvman.2022.115379	http://dx.doi.org/10.1016/j.jenvman.2022.115379		JUN 2022	12	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	2G1GS	35751236				2025-03-11	WOS:000813347300003
J	Bouquet, A; Perdrau, MA; Laabir, M; Foucault, E; Chomérat, N; Rolland, JL; Abadie, E				Bouquet, Aurelien; Perdrau, Marie Anais; Laabir, Mohamed; Foucault, Elodie; Chomerat, Nicolas; Rolland, Jean Luc; Abadie, Eric			<i>Liza ramada</i> Juveniles after Exposure to the Toxic Dinoflagellate <i>Vulcanodinium rugosum</i>: Effects on Fish Viability, Tissue Contamination and Microalgae Survival after Gut Passage	TOXINS			English	Article						Vulcanodinium rugosum; Liza ramada; contamination; pinnatoxins; portimines; food chain; fish; dissemination	MULLET MUGIL-CEPHALUS; HARMFUL ALGAL BLOOMS; DOMOIC ACID; PINNATOXIN G; TROPHIC TRANSFER; SEED DISPERSAL; PHYTOPLANKTON; MIGRATION; COASTAL; LAKE	Pinnatoxins (PnTX) and Portimines (Prtn), two toxins produced by the benthic dinoflagellate Vulcanodinium rugosum, are known to be lethal to mice after intraperitoneal or oral administration. They are also known to accumulate in shellfish such as mussels and clams, but their effect on fish and the upper food chain remains unknown. In this work, juveniles of the fish Liza ramada (Mullet) were exposed to a strain of V. rugosum producing PnTX G and Prtn A. The fishes' viability and contamination were recorded at times interval. Results showed that L. ramada juveniles were able to feed on V. rugosum and that their tissues could be contaminated by PnTX G and Prtn A without impact on fish viability. Furthermore, the microalgae temporary cysts survived and germinated after fish gut passage. This study showed the potential of L. ramada to transfer PnTX and Prtn toxins to the upper food chain and to disseminate V. rugosum in environment.	[Bouquet, Aurelien; Perdrau, Marie Anais; Foucault, Elodie; Rolland, Jean Luc; Abadie, Eric] Univ Montpellier, MARBEC, CNRS, Ifremer, 87 Ave Jean Monnet, F-34200 Sete, France; [Laabir, Mohamed] Univ Montpellier, MARBEC, CNRS, Ifremer,IRD, F-34095 Montpellier, France; [Chomerat, Nicolas] IFREMER, Stn Biol Marine, Pl Croix, F-29900 Concarneau, France; [Abadie, Eric] IFREMER, Biodivenv, 79 Route Pointe Ft, F-97231 Martinique, France	Ifremer; Universite de Montpellier; Centre National de la Recherche Scientifique (CNRS); Centre National de la Recherche Scientifique (CNRS); Ifremer; Institut de Recherche pour le Developpement (IRD); Universite de Montpellier; Ifremer; Ifremer	Bouquet, A; Rolland, JL (通讯作者)，Univ Montpellier, MARBEC, CNRS, Ifremer, 87 Ave Jean Monnet, F-34200 Sete, France.	aurelien.bouquet@ifremer.fr; perdrauanais@gmail.com; mohamed.laabir@umontpellier.fr; elodie.foucault@ifremer.fr; nicolas.chomerat@ifremer.fr; jean.luc.rolland@ifremer.fr; eric.abadie@ifremer.fr		Rolland, jean-luc/0000-0001-9823-6588; ABADIE, Eric/0000-0001-9431-2010; Chomerat, Nicolas/0000-0001-9691-6344	MARBEC (MARine Biodiversity, Exploitation and Conservation); French Ministry of Agriculture and Food	MARBEC (MARine Biodiversity, Exploitation and Conservation); French Ministry of Agriculture and Food	This research was supported by MARBEC (MARine Biodiversity, Exploitation and Conservation) and by the French Ministry of Agriculture and Food. This research received no external funding.	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J	Coats, DW; Moon, E				Coats, D. Wayne; Moon, Eunyoung			Ultrastructure of selected life history stages of the parasitic dinoflagellate <i>Euduboscquella cachoni</i>	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						Amphiesma; chromosome; flagellar apparatus; food vacuole; micropore; nutrition; parasite egress	IN-VITRO CULTIVATION; N. SP DINOFLAGELLATA; ATLANTIC SNOW CRAB; HEMATODINIUM SP; PARASITOPHOROUS VACUOLE; INTRACELLULAR PARASITE; DUBOSCQUELLA-CACHONI; AMOEBOPHRYA SP; INFECTION; DINOPHYCEAE	Euduboscquella species differ from most other syndinean dinoflagellates by having mononucleate trophonts, but resemble species of Amoebophrya and Sphaeripara by episome-hyposome differentiation and cortical complexity. Cytology and development of Euduboscquella species are well characterized, but their ultrastructure remains essentially unexplored. Transmission electron microscopy of Euduboscquella cachoni trophonts, tomont, and sporocytes revealed previously unrecognized structures. Initially dense, fibrous chromosomes uncoiled during early infection, with condensed chromosomes absent over much of the growth cycle recondensing at trophont maturity. The hyposomal amphiesma was two appressed membranes, the episomal cortex was alveolate, and a supraepisomal cavity limited by membrane enclosed the episome. Pseudopod-like extensions of the hyposome during mid infection may facilitate osmotrophic nutrition. The pharyngeal lamina appears to lack ingestatory function; however, transcortical transport of particles occurred via the supraepisomal cavity and episomal micropores. Microtubules originating from the electron-opaque perinema bordering the episome, formed an episomal skeleton hypothesized to function with the pharyngeal lamina, perinema, and the paired membranes of the supraepisomal cavity to effect parasite egress and ingestion of host material. Trichocysts absent during early infection developed during late infection and reached maturity during sporogenesis, suggesting functional importance in spore survival or infection.	[Coats, D. Wayne] Smithsonian Environm Res Ctr, POB 28, Edgewater, MD 21037 USA; [Moon, Eunyoung] Korean Basic Sci Inst, Div Electron Microscop Res, Cheongju, South Korea	Smithsonian Institution; Smithsonian Environmental Research Center; Korea Basic Science Institute (KBSI)	Coats, DW (通讯作者)，318 Bayard Rd, Lothian, MD 20711 USA.	coatsw1@gmail.com		Coats, D Wayne/0000-0002-0636-189X	Korean Basic Science Institute, RD Program [C140440]; National Science Foundation [OCE--8515834]	Korean Basic Science Institute, RD Program; National Science Foundation(National Science Foundation (NSF))	Korean Basic Science Institute, R&D Program, Grant/Award Number: C140440; National Science Foundation, Grant/Award Number: OCE--8515834	Anderson D.M., 2013, BIOL ECOLOGY TINTINN, VG41, P315; Appleton PL, 1996, PARASITOL RES, V82, P279, DOI 10.1007/s004360050113; Appleton PL, 1998, PARASITOLOGY, V116, P115, DOI 10.1017/S0031182097002096; Bateman KS, 2011, ICES J MAR SCI, V68, P2044, DOI 10.1093/icesjms/fsr148; Batista MF, 2020, FRONT CELL DEV BIOL, V8, DOI 10.3389/fcell.2020.00396; Brugerolle G, 2002, EUR J PROTISTOL, V37, P379, DOI 10.1078/0932-4739-00837; CACHON J, 1984, BIOL CELL, V52, P61; Cachon J., 1964, Annales des Sciences Naturelles (12), V6, P1; Cachon J., 1969, Protistologica, V5, P535; Cachon J., 1987, Botanical Monographs (Oxford), V21, P571; Cachon J., 1966, Protistologica, V2, P17; CACHON J, 1970, Protistologica, V6, P57; Cachon J., 1964, ANN SCI NAT ZOOL, V6, P779; Cachon J., 1965, ARCH ZOOLOGIE EXP RI, V105, P369; Chambouvet A, 2011, PROTIST, V162, P637, DOI 10.1016/j.protis.2010.12.001; Chatton E., 1920, Archives de Zoologie Experimentale Paris, V59; Chatton E., 1952, TRAIT ZOOLOGIE, V1, P309; Choi JM, 2021, FRONT MAR SCI, V8, DOI 10.3389/fmars.2021.720424; Clough B, 2017, TRENDS PARASITOL, V33, P473, DOI 10.1016/j.pt.2017.02.007; Coats DW, 2012, J EUKARYOT MICROBIOL, V59, P1, DOI 10.1111/j.1550-7408.2011.00588.x; COATS DW, 1988, J PROTOZOOL, V35, P607, DOI 10.1111/j.1550-7408.1988.tb04159.x; COATS DW, 1989, MAR BIOL, V101, P401, DOI 10.1007/BF00428137; Fensome R.A., 1993, MICROPALEONTOLOGY SP, V7, P1; FRITZ L, 1992, J PHYCOL, V28, P312, DOI 10.1111/j.0022-3646.1992.00312.x; Gaudet PH, 2014, J INVERTEBR PATHOL, V121, P14, DOI 10.1016/j.jip.2014.06.006; Gaudet P.H., 2014, THESIS U P EDWARD IS; Gaudet PH, 2015, PARASITOLOGY, V142, P598, DOI 10.1017/S0031182014001656; Gestal C, 2006, ENVIRON MICROBIOL, V8, P1105, DOI 10.1111/j.1462-2920.2006.01008.x; Guillou L, 2008, ENVIRON MICROBIOL, V10, P3349, DOI 10.1111/j.1462-2920.2008.01731.x; Harada A, 2007, PROTIST, V158, P337, DOI 10.1016/j.protis.2007.03.005; HOLLANDE A, 1974, Protistologica, V10, P413; HUDSON DA, 1994, DIS AQUAT ORGAN, V19, P109, DOI 10.3354/dao019109; HUDSON DA, 1993, J FISH DIS, V16, P273, DOI 10.1111/j.1365-2761.1993.tb01258.x; Jeon BS, 2020, PROTIST, V171, DOI 10.1016/j.protis.2020.125743; Jeon BS, 2018, ALGAE-SEOUL, V33, P1; John U, 2019, SCI ADV, V5, DOI 10.1126/sciadv.aav1110; Jung JH, 2016, J EUKARYOT MICROBIOL, V63, P3, DOI 10.1111/jeu.12231; Kemp LE, 2013, FEMS MICROBIOL REV, V37, P607, DOI 10.1111/1574-6976.12013; Magno RC, 2005, MICROSC MICROANAL, V11, P166, DOI 10.1017/S1431927605050129; Maire J, 2021, ISME J, V15, P2028, DOI 10.1038/s41396-021-00902-4; Maranda L, 2001, J PHYCOL, V37, P245, DOI 10.1046/j.1529-8817.2001.037002245.x; Matz JM, 2020, NAT REV MICROBIOL, V18, P379, DOI 10.1038/s41579-019-0321-3; Miller JJ, 2012, PROTIST, V163, P720, DOI 10.1016/j.protis.2011.11.007; Moon E, 2015, PROTIST, V166, P569, DOI 10.1016/j.protis.2015.08.005; Onda DFL, 2015, ARCH MICROBIOL, V197, P965, DOI 10.1007/s00203-015-1133-0; RIS H, 1974, J CELL BIOL, V60, P702, DOI 10.1083/jcb.60.3.702; ROBERTS KR, 1991, SYST ASSOC SPEC VOL, V45, P285; ROBERTS KR, 1991, PROTOPLASMA, V164, P105, DOI 10.1007/BF01320818; Seibold A, 2001, AQUAT MICROB ECOL, V25, P229, DOI 10.3354/ame025229; Simdyanov T G, 2016, Dokl Biol Sci, V468, P125, DOI 10.1134/S001249661603008X; Soyer M.O, 1974, VIE MILIEU SER, V24, P191; Stentiford Grant D, 2012, Aquat Biosyst, V8, P24, DOI 10.1186/2046-9063-8-24	52	3	3	4	9	WILEY	HOBOKEN	111 RIVER ST, HOBOKEN 07030-5774, NJ USA	1066-5234	1550-7408		J EUKARYOT MICROBIOL	J. Eukaryot. Microbiol.	JUL	2022	69	4							e12921	10.1111/jeu.12921	http://dx.doi.org/10.1111/jeu.12921		MAY 2022	16	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	2Y0VY	35506426				2025-03-11	WOS:000799910700001
J	Fischer, AD; Brosnahan, ML				Fischer, Alexis D.; Brosnahan, Michael L.			Growing Degree-Day Measurement of Cyst Germination Rates in the Toxic Dinoflagellate Alexandrium catenella	APPLIED AND ENVIRONMENTAL MICROBIOLOGY			English	Article						dinoflagellate cyst bed; population comparison; microbial resting stages; temperature-dependent phenology	RESTING CYSTS; FUNDYENSE CYSTS; PUGET-SOUND; DYNAMICS; GULF; TIME; TEMPERATURE; DINOPHYCEAE; POPULATIONS; EXCYSTMENT	Blooms of many dinoflagellates, including several harmful algal bloom (HAB) species, are seeded and revived through the germination of benthic resting cysts. Temperature is a key determinant of cysts' germination rate, and temperature-germination rate relationships are therefore fundamental to understanding species' germling cell production, cyst bed persistence, and resilience to climate warming. This study measured germination by cysts of the HAB dinoflagellate Alexandrium catenella using a growing degree-day (DD) approach that accounts for the time and intensity of warming above a critical temperature. Time courses of germination at different temperatures were fit to lognormal cumulative distribution functions for the estimation of the median days to germination. As temperature increased, germination times decreased hyperbolically. DD scaling collapsed variability in germination times between temperatures after cysts were oxygenated. A parallel experiment demonstrated stable temperature-rate relationships in cysts collected during different phases of seasonal temperature cycles in situ over three years. DD scaling of the results from prior A. catenella germination studies showed consistent differences between populations across a wide range of temperatures and suggests selective pressure for different germination rates. The DD model provides an elegant approach to quantify and compare the temperature dependency of germination among populations, between species, and in response to changing environmental conditions. IMPORTANCE Germination by benthic life history stages is the first step of bloom initiation in many, diverse phytoplankton species. This study outlines a growing degree-day (DD) approach for comparing the temperature dependence of germination rates measured in different populations. Germination by cysts of Alexandrium catenella, a harmful algal bloom dinoflagellate that causes paralytic shellfish poisoning, is shown to require a defined amount of warming, measured in DD after cysts are aerated. Scaling by DD, the time integral of temperature difference from a critical threshold, enabled direct comparison of rates measured at different temperatures and in different studies. Germination by benthic life history stages is the first step of bloom initiation in many, diverse phytoplankton species. This study outlines a growing degree-day (DD) approach for comparing the temperature dependence of germination rates measured in different populations.	[Fischer, Alexis D.; Brosnahan, Michael L.] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA	Woods Hole Oceanographic Institution	Fischer, AD (通讯作者)，Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA.	afischer@whoi.edu	Fischer, Alexis/M-4531-2019	Brosnahan, Michael/0000-0002-2620-7638; Fischer, Alexis/0000-0002-8028-487X	Woods Hole Center for Oceans and Human Health (National Science Foundation) [OCE-0430724, OCE-0911031, OCE-1314642, OCE-1840381]; Woods Hole Center for Oceans and Human Health (National Institutes of Health) [NIEHS-1P50-ES02192301, P01ES028938]; National Institute of Environmental Health Sciences [P01ES028938] Funding Source: NIH RePORTER	Woods Hole Center for Oceans and Human Health (National Science Foundation); Woods Hole Center for Oceans and Human Health (National Institutes of Health)(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH Division of Research Services (DRS)); National Institute of Environmental Health Sciences(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Environmental Health Sciences (NIEHS))	We gratefully acknowledge support to A.D.F. and M.L.B. through the Woods Hole Center for Oceans and Human Health (National Science Foundation grants OCE-0430724, OCE-0911031, OCE-1314642, and OCE-1840381 and National Institutes of Health grants NIEHS-1P50-ES02192301 and P01ES028938).	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Environ. Microbiol.	JUN 28	2022	88	12								10.1128/aem.02518-21	http://dx.doi.org/10.1128/aem.02518-21		MAY 2022	13	Biotechnology & Applied Microbiology; Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Microbiology	2O1TF	35604227	Green Published, hybrid			2025-03-11	WOS:000803948400006
J	Wu, XM; Li, L; Lin, SJ				Wu, Xiaomei; Li, Ling; Lin, Senjie			Energy metabolism and genetic information processing mark major transitions in the life history of<i> Scrippsiella</i><i> acuminata</i> (Dinophyceae)	HARMFUL ALGAE			English	Article						Dinoflagellate; Scrippsiella acuminata; Transcriptome; Cyst; Energy metabolism; Genetic information processing	DINOFLAGELLATE-AKASHIWO-SANGUINEA; CYST PRODUCTION; ALEXANDRIUM; TROCHOIDEA; THORACOSPHAERACEAE; IDENTIFICATION; EVOLUTIONARY; VALIDATION; EXCYSTMENT; EXPRESSION	Many dinoflagellates perform sexual reproduction and form cysts as a life history strategy to survive adverse environmental conditions and seed annual harmful algal blooms (HABs). The molecular mechanisms underpinning the life stage transitions can provide clues about how key environmental factors induce encystment and initiation of a HAB but are still poorly understood. Here, we conducted an integrated physiological and transcriptomic study to unravel the mechanisms in Scrippsiella acuminata. We established a culture from a bloom, induced cyst formation, and divided the process into four life stages. Transcriptomic analysis of these stages revealed 19,900 differentially expressed genes (DEGs). The expression of genes related to photosynthesis was significantly up-regulated from vegetative stage to immature cyst stage, consistent with the marked increase in cell contents of energy-storing macromolecules (carbohydrates and lipids). When proceeding to resting cysts, most photosynthesis genes were down-regulated while "genetic information processing" related genes were up regulated. Comparing germinating cysts with resting cysts revealed 100 DEGs involved in energy metabolism, indicating a high energy requirement of germination. In addition, the transition from germinating cysts to vegetative cells featured up-regulation of photosynthesis. Our results demonstrate that energy storage and consumption play a pivotal role in cyst formation and germination respectively and genetic information processing is crucial in cyst dormancy.	[Wu, Xiaomei; Li, Ling; Lin, Senjie] Xiamen Univ, Coll Ocean & Earth Sci, State Key Lab Marine Environm Sci, Xiamen 361102, Peoples R China; [Lin, Senjie] Univ Connecticut, Dept Marine Sci, Groton, CT 06340 USA	Xiamen University; University of Connecticut	Lin, SJ (通讯作者)，Xiamen Univ, Coll Ocean & Earth Sci, State Key Lab Marine Environm Sci, Xiamen 361102, Peoples R China.	senjie.lin@uconn.edu	Lin, Senjie/A-7466-2011	Wu, Xiaomei/0000-0002-7425-8755; Lin, Senjie/0000-0001-8831-6111	Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) [2018SDKJ0406-3]; National Natural Science Foundation of China [NSFC 41776116, 31661143029]	Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	We wish to thank Dazhi Wang (Xiamen University) for providing the opportunity to join the research cruise. We also thank Mr. Huatao Yuan (Xiamen University) for collecting the field samples for the isolation of S. acuminata, Dr. Liying Yu (Xiamen University) for depositing data to NCBI and to the SAGER database (http://sampgr.org.cn/) , and Ms. Chentao Guo and Mr. Yujie Wang for logistic support. We are indebted to the four anonymous reviewers for their kind and constructive comments that led to significant improvement of the manuscript. This work was supported by the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) (No.2018SDKJ0406-3) , and the National Natural Science Foundation of China grants NSFC 41776116 and 31661143029.	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J	Kuek, FWI; Motti, CA; Zhang, J; Cooke, IR; Todd, JD; Miller, DJ; Bourne, DG; Raina, JB				Kuek, Felicity W. I.; Motti, Cherie A.; Zhang, Jia; Cooke, Ira R.; Todd, Jonathan D.; Miller, David J.; Bourne, David G.; Raina, Jean-Baptiste			DMSP Production by Coral-Associated Bacteria	FRONTIERS IN MARINE SCIENCE			English	Article						DMSP; sulfur cycle; coral-associated bacteria; holobiont; acrylate	REEF-BUILDING CORAL; DIMETHYLSULFONIOPROPIONATE DMSP; OXIDATIVE STRESS; SP-NOV.; SEQUENCE; DIMETHYLSULFIDE; SALINITY; SEARCH; BIOSYNTHESIS; DIVERSITY	Dimethylsulfoniopropionate (DMSP) is an important molecule in the marine sulfur cycle, produced in large amounts by corals and their dinoflagellate endosymbionts, Symbiodiniaceae. Although corals are known to harbour bacteria that can catabolise DMSP, the recent discovery of bacteria capable of producing DMSP in coastal and deep-sea environments raises the possibility of a bacterial contribution to the DMSP output of corals. Here, 157 bacteria associated with four common coral species were isolated and screened for their ability to produce DMSP by targeting dsyB, a key gene involved in DMSP biosynthesis. Approximately 9% (14 out of 157) of the bacterial isolates harboured dsyB, all being members of the Alphaproteobacteria. The ability of these isolates to produce DMSP was confirmed by liquid chromatography-mass spectrometry (LC-MS) and nuclear magnetic resonance (NMR) measurements. A dsyB-harbouring strain, Shimia aestuarii AMM-P-2, was selected for genome sequencing. This strain harbours the complete genetic machinery to (i) assimilate sulfate and synthesise the DMSP precursors, cysteine and methionine; (ii) demethylate DMSP and generate methanethiol; (iii) cleave DMSP, generating dimethyl sulfide (DMS) and acrylate; and (iv) utilise or detoxify acrylate. The impacts of varied environmental factors (temperature, salinity, light and UV radiation) on S. aestuarii AMM-P-2 DMSP biosynthesis were characterised. DMSP levels in S. aestuarii AMM-P-2 increased almost two-fold under both hypersaline conditions (40 PSU) and high UV exposure. DMSP catabolism through the cleavage pathway also increased under these conditions, producing the antioxidants DMS and acrylate, a potential response to the oxidative stress generated. Overall, our results reveal that coral-associated bacteria can synthesize DMSP and may therefore contribute to DMSP production by the coral holobiont.	[Kuek, Felicity W. I.; Motti, Cherie A.; Bourne, David G.] James Cook Univ, Div Res & Innovat, AIMS JCU, Townsville, Qld, Australia; [Kuek, Felicity W. I.; Miller, David J.] James Cook Univ, Australian Res Council ARC Ctr Excellence Coral Re, Townsville, Qld, Australia; [Kuek, Felicity W. I.; Zhang, Jia; Cooke, Ira R.; Miller, David J.] James Cook Univ, Ctr Trop Bioinformat & Mol Biol, Townsville, Qld, Australia; [Kuek, Felicity W. I.; Zhang, Jia; Cooke, Ira R.; Miller, David J.] James Cook Univ, Coll Publ Hlth Med & Vet Sci, Townsville, Qld, Australia; [Kuek, Felicity W. I.; Motti, Cherie A.; Bourne, David G.] Australian Inst Marine Sci, Trop Marine Water Qual & Impacts, Townsville, Qld, Australia; [Todd, Jonathan D.] Univ East Anglia, Sch Biol Sci, Norwich Res Pk, Norwich, England; [Bourne, David G.] James Cook Univ, Coll Sci & Engn, Townsville, Qld, Australia; [Raina, Jean-Baptiste] Univ Technol Sydney, C3, Ultimo, NSW, Australia	James Cook University; James Cook University; ARC Centre of Excellence for Coral Reef Studies; James Cook University; James Cook University; Australian Institute of Marine Science; University of East Anglia; James Cook University; University of Technology Sydney	Raina, JB (通讯作者)，Univ Technol Sydney, C3, Ultimo, NSW, Australia.	Jean-Baptiste.Raina@uts.edu.au	Cooke, Ira/B-4409-2008; Raina, Jean-Baptiste/I-1072-2016; Motti, Cherie/A-2588-2012; Bourne, David/AFP-9349-2022; Todd, Jonathan/B-8967-2009	Miller, David/0000-0003-0291-9531; Zhang, Jia/0000-0003-1161-4836; Kuek, Felicity/0000-0001-9123-9903; Cooke, Ira/0000-0001-6520-1397; Raina, Jean-Baptiste/0000-0002-7508-0004; Motti, Cherie/0000-0002-3292-2785	AIMS@JCU Division of Research & Innovation and the College of Public Health, Medical and Veterinary Sciences at James Cook University; AIMS@JCU; AIMS@JCU Division of Research Innovation; College of Public Health, Medical and Veterinary Sciences at James Cook University; Pilot Research Awards from AIMS@JCU; NERC [NE/P012671/1, NE/M004449/1, NE/N002385/1, NE/J01138X/1, NE/S001352/1] Funding Source: UKRI	AIMS@JCU Division of Research & Innovation and the College of Public Health, Medical and Veterinary Sciences at James Cook University; AIMS@JCU; AIMS@JCU Division of Research Innovation; College of Public Health, Medical and Veterinary Sciences at James Cook University; Pilot Research Awards from AIMS@JCU; NERC(UK Research & Innovation (UKRI)Natural Environment Research Council (NERC))	FWIK was supported through scholarships and funding from the AIMS@JCU Division of Research & Innovation and the College of Public Health, Medical and Veterinary Sciences at James Cook University. This research was funded in part by the Pilot Research Awards from AIMS@JCU.	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Mar. Sci.	MAY 4	2022	9								869574	10.3389/fmars.2022.869574	http://dx.doi.org/10.3389/fmars.2022.869574			12	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	1J3FX		Green Accepted, gold			2025-03-11	WOS:000797806700001
J	Yan, D; Nishioka, J; Toyota, T; Suzuki, K				Yan, Dong; Nishioka, Jun; Toyota, Takenobu; Suzuki, Koji			Winter microalgal communities of the southern Sea of Okhotsk: A comparison of sea ice, coastal, and basinal seawater	PROGRESS IN OCEANOGRAPHY			English	Review						Sea of Okhotsk; Sea ice; Diatoms; Ice algae; Phytoplankton; Algal bloom; East Sakhalin Current	SAROMA-KO LAGOON; SURFACE SEDIMENTS; SPECIES COMPOSITION; NORTH PACIFIC; PACK ICE; IRON; PHYTOPLANKTON; WATER; ALGAE; ASSEMBLAGES	The Sea of Okhotsk is a marginal sea of the western North Pacific Ocean and a key region for the seawater circulation of the North Pacific. In winter, a large amount of sea ice forms over the northern shelf and off the eastern Sakhalin coast. The sea ice is transported to the southern part of the sea by the fresh and cold East Sakhalin Current (ESC). Microalgae are the main players in the primary production of the sea ice ecosystems. We investigated the winter microalgal communities of the sea ice ecosystem in the southern Sea of Okhotsk, including the communities living in sea ice and seawater using microscopy and DNA barcoding. The results showed that diatoms were the major component in the microalgal communities. Sea ice algal communities were dominated by Thalassiosira spp., Porosira glacialis, and Fragilariopsis cylindrus, while other typical sea ice pennate diatoms were rarely found. The seawater stations were separated into two groups by hydrological conditions: coastal stations strongly affected by ESC; basinal stations influenced by the deep mixing and the basinal gyre. Small-sized diatoms and naked nanoflagellates were more abundant at the ESC-influenced stations that had higher concentrations of dissolved Fe (DFe) and ammonia (NH4). In particular, spores of Chaetoceros dominated the ESC-influenced seawater. Representative algal taxa specific to the basinal stations, including the diatom Shionodiscus spp., the haptophyte Coccolithus pelagicus, and the dinoflagellate Prorocentrum minimum, were either typical for the basinal gyres or the remnants of the autumn algal blooms. The results suggested that the winter phytoplanktonic communities of the southern Sea of Okhotsk were dependent almost entirely on whether they were within the influence of the ESC. Ice algae were far more abundant than phytoplankton, indicating their major role in the seeding of the spring bloom.	[Yan, Dong; Suzuki, Koji] Hokkaido Univ, Fac Environm Earth Sci, Sapporo, Hokkaido, Japan; [Yan, Dong] Japan Soc Promot Sci JSPS Res Fellow, Tokyo, Japan; [Nishioka, Jun] Hokkaido Univ, Pan Okhotsk Res Ctr, Inst Low Temp Sci, Sapporo, Hokkaido, Japan; [Toyota, Takenobu] Hokkaido Univ, Inst Low Temp Sci, Sapporo, Hokkaido, Japan; [Suzuki, Koji] Hokkaido Univ, Grad Sch Environm Sci, Sapporo, Hokkaido, Japan	Hokkaido University; Hokkaido University; Hokkaido University; Hokkaido University	Yan, D; Suzuki, K (通讯作者)，Hokkaido Univ, Fac Environm Earth Sci, Sapporo, Hokkaido, Japan.	yandong1990@hotmail.com; kojis@ees.hokudai.ac.jp	Nishioka, Jun/F-5314-2011; Toyota, Takenobu/D-9101-2012; Suzuki, Koji/A-4349-2013	Suzuki, Koji/0000-0001-5354-1044	JSPS KAKENHI [JP18H03352, JP17H00775]; Environment Research and Technology Development Fund of the Environmental Restoration and Conservation Agency of Japan [JPMEERF20214002]; JSPS Research Fellowship for Young Scientists [20J10963]; Grant for Joint Research Program of the Institute of Low Temperature Science, Hokkaido University	JSPS KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Environment Research and Technology Development Fund of the Environmental Restoration and Conservation Agency of Japan; JSPS Research Fellowship for Young Scientists(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); Grant for Joint Research Program of the Institute of Low Temperature Science, Hokkaido University	We thank the captain, crew and colleagues for supporting sea ice sampling during the P/V Soya SIRAS-19 expedition. This work was partially supported by JSPS KAKENHI (Grant Numbers JP18H03352 and JP17H00775) , the Environment Research and Technology Devel-opment Fund (JPMEERF20214002) of the Environmental Restoration and Conservation Agency of Japan, the JSPS Research Fellowship for Young Scientists (20J10963) , and the Grant for Joint Research Program of the Institute of Low Temperature Science, Hokkaido University.	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JUN	2022	204								102806	10.1016/j.pocean.2022.102806	http://dx.doi.org/10.1016/j.pocean.2022.102806		APR 2022	12	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	3E7GG		Bronze			2025-03-11	WOS:000830148700003
J	Dzhembekova, N; Rubino, F; Belmonte, M; Zlateva, I; Slabakova, N; Ivanova, P; Slabakova, V; Nagai, S; Moncheva, S				Dzhembekova, Nina; Rubino, Fernando; Belmonte, Manuela; Zlateva, Ivelina; Slabakova, Nataliya; Ivanova, Petya; Slabakova, Violeta; Nagai, Satoshi; Moncheva, Snejana			Distribution of Different <i>Scrippsiella acuminata</i> (Dinophyta) Cyst Morphotypes in Surface Sediments of the Black Sea: A Basin Scale Approach	FRONTIERS IN MARINE SCIENCE			English	Article						Black Sea; Scrippsiella acuminata; cyst abundance; cyst distribution; environmental variables; redundancy analysis	DINOFLAGELLATE PROTOCERATIUM-RETICULATUM; PROCESS LENGTH VARIATION; MAR PICCOLO; TAXONOMIC CLARIFICATION; TROCHOIDEA DINOPHYCEAE; RESTING CYST; MORPHOLOGY; BAY; ENCYSTMENT; SALINITY	Plankton cyst abundance and distribution is controlled by multiple factors. The stress linked to the fluctuations and variations of the environmental conditions in the water column is a major vector of encystment and intraspecific variability is an important adaptive strategy. The present study aims to disclose a link between the spatial distribution and abundance of different cyst morphotypes of Scrippsiella acuminata complex in surface sediments collected in the Black Sea at 34 sites and selected environmental variables. With this purpose, a basin scale data set was analyzed for patterns of intraspecific spatial heterogeneity. Redundancy analysis (RDA) was implemented to identify explanatory environmental variables associated with the cyst morphotypes abundance. Environmental multiyear data were used to ensure better approximation of a model that links environmental gradients with cyst abundance. Our results show that all S. acuminata cysts morphotypes are significantly correlated to one or a combination of the environmental variables, i.e., salinity, temperature and nutrients (nitrates and phosphates). The geographical distribution of Scrippsiella blooms in the Black Sea indicates that the interplay between the planktonic and benthic habitat of the dinoflagellate gives to S. acuminata the advantage to dominate in the plankton communities.	[Dzhembekova, Nina; Zlateva, Ivelina; Slabakova, Nataliya; Ivanova, Petya; Slabakova, Violeta; Moncheva, Snejana] Bulgarian Acad Sci, Inst Oceanol Fridtj Nansen, Varna, Bulgaria; [Rubino, Fernando; Belmonte, Manuela] Natl Res Council CNR, Water Res Inst, Unit Talassograf A Cerruti, IRSA, Taranto, Italy; [Nagai, Satoshi] Natl Res Inst Fisheries Sci, Yokohama, Japan	Bulgarian Academy of Sciences; Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR); Japan Fisheries Research & Education Agency (FRA)	Moncheva, S (通讯作者)，Bulgarian Acad Sci, Inst Oceanol Fridtj Nansen, Varna, Bulgaria.	snejanam@abv.bg	Slabakova, Nataliya/LHA-4700-2024; Ivanova, Petya/A-3217-2014; Rubino, Fernando/GOP-0332-2022; Belmonte, Marisol/AAG-9759-2019; Nagai, Satoshi/HOA-8686-2023; Dzhembekova, Nina/HTN-3019-2023	Nagai, Satoshi/0000-0001-7510-0063; Dzhembekova, Nina/0000-0001-9620-6422; Slabakova, Nataliya/0000-0002-3294-5346				Anderson D.M., 2003, Monographs on Oceanographic Methodology, V11, P165; 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Mar. Sci.	APR 28	2022	9								864214	10.3389/fmars.2022.864214	http://dx.doi.org/10.3389/fmars.2022.864214			13	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	1H7QS		gold			2025-03-11	WOS:000796734600001
J	Wang, ZH; Xie, CL; Zhang, JN; Ji, SH; Zhao, JA; Nie, XP				Wang, Zhaohui; Xie, Changliang; Zhang, Jianneng; Ji, Shuanghui; Zhao, Jiangang; Nie, Xiangping			The responses of Scrippsiella acuminata to the stresses of darkness: antioxidant activities and formation of pellicle cysts	HARMFUL ALGAE			English	Article						Scrippsiella acuminata; Darkness; Low temperature; Temporary cysts; SOD; GSH	PROLONGED DARKNESS; OXIDATIVE STRESS; TEMPORARY CYSTS; DINOFLAGELLATE; DINOPHYCEAE; PHYTOPLANKTON; TROCHOIDEA; SURVIVAL; MICROALGAE; TEMPERATURE	In order to understand the strategy of Scrippsiella acuminata to cold dark environment, the antioxidant responses and the formation of pellicle cysts of S. acuminata to darkness at 8 degrees C and 20 degrees C were investigated. Cell densities decreased significantly after 96 h dark treatment, and no live cells were observed after 9-days dark treatments. The darkness stress generally resulted in an increase of antioxidant defenses, including soluble protein, superoxide dismutase (SOD), glutathione (GSH), and malondialdehyde (MDA). Cellular soluble protein and SOD activity increased sharply under 20 degrees C darkness, which protected algal cells against the oxidative stress from darkness, and resulted in relatively lower MDA levels. Soluble protein and SOD activity were enhanced under 8 degrees C darkness as well however not in a sharp rise, and higher levels of MDA and GSH were recorded. The results suggested high SOD and protein levels protected cells against harsh darkness stress, while high GSH not only helped algae cells resist dark stress, but also played an important role in low temperature stress. Darkness promoted the formation of pellicle cysts of S. acuminata, and the maximum formation rates were 16.06% to 21.74% at 8 degrees C and 20 degrees C, respectively. Germination of pellicle cysts occurred within 24 h after light exposure, however pellicle cysts could not withstand long-time darkness stress, and all pellicle cysts died after 9-days darkness exposure. The results of this study suggest that S. acuminata is able to overcome temporary cold darkness through forming pellicle cysts.	[Wang, Zhaohui; Xie, Changliang; Zhang, Jianneng; Ji, Shuanghui; Zhao, Jiangang; Nie, Xiangping] Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China	Jinan University	Wang, ZH; Zhao, JA; Nie, XP (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China.	twzh@jnu.edu.cn; zhjg@jnu.edu.cn; txpnie@jnu.edu.cn			National Natural Science Foundation of China [42076141]; Science & Technology Basic Re-sources Investigation Program of China [2018FY100200]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Science & Technology Basic Re-sources Investigation Program of China	Acknowledgments This study was funded by the National Natural Science Foundation of China (grant No. 42076141) and the Science & Technology Basic Re-sources Investigation Program of China (grant No. 2018FY100200) .	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J	Rodrigues, RV; Patil, JS				Rodrigues, R., V; Patil, J. S.			Response of benthic dinoflagellates <i>Amphidinium carterae</i> and <i>Bysmatrum gregarium</i> to salinity changes and prolonged darkness: elucidation through laboratory experiments	AQUATIC ECOLOGY			English	Article						Benthic dinoflagellates; Amphidinium carterae; Bysmatrum gregarium; Salinity; Prolonged darkness; Growth; Cyst; Photosynthetic efficiency	PERIDININ-CHLOROPHYLL-PROTEIN; ABSORPTION CROSS-SECTIONS; SUBSALSUM DINOPHYCEAE; COMMUNITY STRUCTURE; GROWTH; SURVIVAL; PHOTOSYNTHESIS; TEMPERATURE; SENESCENCE; IRRADIANCE	This study elucidates the responses of bloom-forming benthic dinoflagellates, Amphidinium carterae and Bysmatrum gregarium (formerly known as B. caponii) to salinity changes and prolonged darkness. Both dinoflagellates are known to inhabit rock pools that experiences significant variations in environmental conditions. In both dinoflagellates, salinity changes did not trigger cyst formation but morphological responses were different under prolonged darkness. B. gregarium underwent encystment while A. carterae showed cell shrinkage and flagella movement (up to 9 days) without cell division. This study documents cyst formation in B. gregarium for the first time. However, both dinoflagellates showed reduced growth and photosynthetic efficiency under lower salinity (< 5) and prolonged darkness. Interestingly, both dinoflagellates did not show a maximum photosynthetic efficiency of 0.65 under optimal growth conditions which could be due to the prevalence of carotenoid-chlorophyll protein complex and diatoxanthin (fluorescence quencher). This study proposes that seasonal rainfall (e.g., Southwest monsoon along the Indian coast) can control the proliferation of both dinoflagellates in rock pools (i.e., just before the onset of monsoonal rainfall) as it hampers cell growth, inhibits photosynthesis, and does not induce cyst formation as adaptive survival strategies. Further findings on their dark survival for several days will have implications in the studies related to the transportation to different locations through the ship's ballast water discharge or to deeper sediments in the intertidal regions.	[Rodrigues, R., V; Patil, J. S.] CSIR Natl Inst Oceanog, Panaji 403004, Goa, India; [Rodrigues, R., V] Goa Univ, Sch Earth Ocean & Atmospher Sci, Panaji 403206, Goa, India	Council of Scientific & Industrial Research (CSIR) - India; CSIR - National Institute of Oceanography (NIO); Goa University	Patil, JS (通讯作者)，CSIR Natl Inst Oceanog, Panaji 403004, Goa, India.	patilj@nio.org			CSIR-National Institute of Oceanography [PSC0105]	CSIR-National Institute of Oceanography	CSIR-National Institute of Oceanography (PSC0105).	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Ecol.	DEC	2022	56	4					1113	1126		10.1007/s10452-022-09960-y	http://dx.doi.org/10.1007/s10452-022-09960-y		APR 2022	14	Ecology; Limnology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	5U5GC					2025-03-11	WOS:000782883000001
J	Balzano, S; Sardo, A				Balzano, Sergio; Sardo, Angela			Bioinformatic prediction of putative metallothioneins in non-ciliate protists	BIOLOGY LETTERS			English	Article						heavy metals; pollution; metallothioneins; non-ciliate protists	HEAVY-METAL DETOXIFICATION; BINDING; SEQUENCE; CILIATE; BIOSENSORS; DIVERSITY; PROTEIN; ALGAE	Intracellular ligands that bind heavy metals (HMs) and thereby minimize their detrimental effects to cellular metabolism are attracting great interest for a number of applications including bioremediation and development of HM-biosensors. Metallothioneins (MTs) are short, cysteine-rich, genetically encoded proteins involved in intracellular metal-binding and play a key role in detoxification of HMs. We searched approximately 700 genomes and transcriptomes of non-ciliate protists for novel putative MTs by similarity and structural analyses and found 21 unique proteins playing a potential role as MTs. Most putative MTs derive from heterokonts and dinoflagellates and share common features such as (i) a putative metal-binding domain in proximity of the N-terminus, (ii) two putative MT-specific domains near the C-terminus and (iii) one to three CTCGXXCXCGXXCXCXXC patterns. Although the biological function of these proteins has not been experimentally proven, knowledge of their genetic sequences adds useful information on proteins that are potentially involved in HM-binding and can contribute to the design of future biomolecular assays on HM-microbe interactions and MT-based biosensors.	[Balzano, Sergio; Sardo, Angela] Stn Zool Anton Dohrn Napoli SZN, Dept Ecosustainable Marine Biotechnol, Via Ammiraglio Ferdinando Acton 55, I-80133 Naples, Italy; [Balzano, Sergio] NIOZ Royal Netherlands Inst Sea Res, NL-1790 AB Den Burg, Netherlands; [Sardo, Angela] CNR, Ist Sci Applicate & Sistemi Intelligenti, Via Campi Flegrei 34, I-80078 Naples, Italy	Stazione Zoologica Anton Dohrn; Utrecht University; Royal Netherlands Institute for Sea Research (NIOZ); Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Applicate e Sistemi Intelligenti "Eduardo Caianiello" (ISASI-CNR)	Balzano, S (通讯作者)，Stn Zool Anton Dohrn Napoli SZN, Dept Ecosustainable Marine Biotechnol, Via Ammiraglio Ferdinando Acton 55, I-80133 Naples, Italy.; Balzano, S (通讯作者)，NIOZ Royal Netherlands Inst Sea Res, NL-1790 AB Den Burg, Netherlands.	sergio.balzano@szn.it	Sardo, Angela/AAB-5712-2021; BALZANO, Sergio/L-7936-2017	BALZANO, Sergio/0000-0002-3172-1332; Di Spiezio Sardo, Attilio/0000-0001-6485-5735				Amaro F, 2011, MICROB BIOTECHNOL, V4, P513, DOI 10.1111/j.1751-7915.2011.00252.x; Baldauf SL, 2008, J SYST EVOL, V46, P263, DOI 10.3724/SP.J.1002.2008.08008; Balzano S., 2022, BIOINFORMATIC PREDIC, DOI [10.6084/m9.figshare.c.5918300, DOI 10.6084/M9.FIGSHARE.C.5918300]; Balzano S, 2020, FRONT MICROBIOL, V11, DOI 10.3389/fmicb.2020.00517; Blaby-Haas CE, 2019, ANNU REV PLANT BIOL, V70, P605, DOI 10.1146/annurev-arplant-050718-095841; Blaby-Haas CE, 2012, BBA-MOL CELL RES, V1823, P1531, DOI 10.1016/j.bbamcr.2012.04.010; Blindauer CA, 2011, J BIOL INORG CHEM, V16, P1011, DOI 10.1007/s00775-011-0790-y; Blindauer CA, 2010, NAT PROD REP, V27, P720, DOI 10.1039/b906685n; BULL PC, 1994, TRENDS GENET, V10, P246, DOI 10.1016/0168-9525(94)90172-4; Capdevila M, 2011, J BIOL INORG CHEM, V16, P977, DOI 10.1007/s00775-011-0798-3; Cobbett C, 2002, ANNU REV PLANT BIOL, V53, P159, DOI 10.1146/annurev.arplant.53.100301.135154; Crooks GE, 2004, GENOME RES, V14, P1188, DOI 10.1101/gr.849004; Das N, 2008, INDIAN J BIOTECHNOL, V7, P159; Dunker S, 2018, FRONT MICROBIOL, V9, DOI 10.3389/fmicb.2018.00719; Dvorak M, 2018, METALLOMICS, V10, P1638, DOI 10.1039/c8mt00215k; Fahey ME, 2011, BMC BIOINFORMATICS, V12, DOI 10.1186/1471-2105-12-298; Forster D, 2016, FEMS MICROBIOL ECOL, V92, DOI 10.1093/femsec/fiw120; Gitschier J, 1998, NAT STRUCT BIOL, V5, P47, DOI 10.1038/nsb0198-47; Gu R, 2020, FRONT MICROBIOL, V11, DOI 10.3389/fmicb.2020.592489; Gutiérrez JC, 2015, FRONT MICROBIOL, V6, DOI 10.3389/fmicb.2015.00048; Gutiérrez JC, 2011, J BIOL INORG CHEM, V16, P1025, DOI 10.1007/s00775-011-0820-9; Gutiérrez JC, 2009, BIOESSAYS, V31, P805, DOI 10.1002/bies.200900011; Gutiérrez JC, 2019, MICROBIAL DIVERSITY IN THE GENOMIC ERA, P387, DOI 10.1016/B978-0-12-814849-5.00022-8; Iturbe-Espinoza P, 2016, PLOS ONE, V11, DOI 10.1371/journal.pone.0148651; Johnson LK, 2019, GIGASCIENCE, V8, DOI 10.1093/gigascience/giy158; Jones P, 2014, BIOINFORMATICS, V30, P1236, DOI 10.1093/bioinformatics/btu031; Katoh Kazutaka, 2013, Mol Biol Evol, V30, P772, DOI 10.1093/molbev/mst010; Keeling PJ, 2014, PLOS BIOL, V12, DOI 10.1371/journal.pbio.1001889; Keeling PJ, 2013, ANNU REV PLANT BIOL, V64, P583, DOI 10.1146/annurev-arplant-050312-120144; Korkola NC, 2020, METALLOMICS, V12, P435, DOI 10.1039/c9mt00285e; Kumar KS, 2015, ECOTOX ENVIRON SAFE, V113, P329, DOI 10.1016/j.ecoenv.2014.12.019; Lehembre F, 2013, ENVIRON MICROBIOL, V15, P2829, DOI 10.1111/1462-2920.12143; Leszczyszyn OI, 2013, METALLOMICS, V5, P1146, DOI 10.1039/c3mt00072a; Morris CA, 1999, BIOCHEM J, V338, P553, DOI 10.1042/0264-6021:3380553; Nielsen AE, 2006, BIOMARK INSIGHTS, V1, P99; Niyogi KK, 1999, ANNU REV PLANT PHYS, V50, P333, DOI 10.1146/annurev.arplant.50.1.333; Pedrini-Martha V, 2020, INT J MOL SCI, V21, DOI 10.3390/ijms21051631; Perales-Vela HV, 2006, CHEMOSPHERE, V64, P1, DOI 10.1016/j.chemosphere.2005.11.024; Ruttkay-Nedecky B, 2013, INT J MOL SCI, V14, P6044, DOI 10.3390/ijms14036044; Sácky J, 2014, FUNGAL GENET BIOL, V67, P3, DOI 10.1016/j.fgb.2014.03.003; Scheller JS, 2018, DALTON T, V47, P3613, DOI 10.1039/c7dt03319b; Shetty RS, 2004, BIOTECHNOL BIOENG, V88, P664, DOI 10.1002/bit.20331; Shitanda I, 2005, ANAL CHEM, V77, P6715, DOI 10.1021/ac050894b; Youens-Clark K, 2019, GIGASCIENCE, V8, DOI 10.1093/gigascience/giz083; Zahid MT, 2018, PAK J ZOOL, V50, P1171, DOI 10.17582/journal.pjz/2018.50.3.1171.1181; Zhang YM, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0069225; Ziller A, 2018, METALLOMICS, V10, P1549, DOI 10.1039/c8mt00165k; Ziller A, 2017, J INORG BIOCHEM, V167, P1, DOI [10.1016/j.jinorgbio.2016.11.07, 10.1016/j.jinorgbio.2016.11.017]	48	2	3	0	11	ROYAL SOC	LONDON	6-9 CARLTON HOUSE TERRACE, LONDON SW1Y 5AG, ENGLAND	1744-9561	1744-957X		BIOL LETTERS	Biol. Lett.	APR 13	2022	18	4							20220039	10.1098/rsbl.2022.0039	http://dx.doi.org/10.1098/rsbl.2022.0039			8	Biology; Ecology; Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Life Sciences & Biomedicine - Other Topics; Environmental Sciences & Ecology; Evolutionary Biology	0Z1NU	35414221	Green Published, hybrid			2025-03-11	WOS:000790847100003
J	Cahoon, AB; VanGundy, RD				Cahoon, A. Bruce; VanGundy, Robert D.			Alveolates (dinoflagellates, ciliates and apicomplexans) and Rhizarians are the most common microbial eukaryotes in temperate Appalachian karst caves	ENVIRONMENTAL MICROBIOLOGY REPORTS			English	Article							TESTATE AMEBAS; DIVERSITY; COMMUNITY; CLASSIFICATION; BIODIVERSITY; BIOFILMS; PROTOZOA; REVEALS; MARKER; LIFE	The purpose of this study was to survey the eukaryotic microbiome of two karst caves in the Valley and Ridge physiographic region of the Appalachian Mountains. Caves are known to harbour eukaryotic microbes but their very low densities and small cell size make them difficult to collect and identify. Microeukaryotes were surveyed using two methodologies, filtering water and submerging glass microscope slides mounted in periphytometers in cave pools. The periphyton sampling yielded 13.5 times more unique amplicon sequence variants (ASVs) than filtered water. The most abundant protist supergroup was Alveolata with large proportions of the ASVs belonging to dinoflagellate, ciliate and apicomplexan clades. The next most abundant were Rhizarians followed by Stramenopiles (diatoms and chrysophytes) and Ameobozoans. Very few of the ASVs, 1.5%, matched curated protist sequences with greater than 99% identity and only 2.5% could be identified from surface plankton samples collected in the same region. The overall composition of the eukaryotic microbiome appears to be a combination of bacterial grazers and parasitic species that could possibly survive underground as well as cells, cysts and spores probably transported from the surface.	[Cahoon, A. Bruce; VanGundy, Robert D.] Univ Virginias Coll Wise, Dept Nat Sci, Wise, VA 24293 USA	University of Virginia	Cahoon, AB (通讯作者)，Univ Virginias Coll Wise, Dept Nat Sci, Wise, VA 24293 USA.	abc6c@uvawise.edu		Cahoon, Aubrey Bruce/0000-0003-1313-9223	John C. Buchanan chair of biology endowment	John C. Buchanan chair of biology endowment	The authors wish to thank Natural Tunnel State Park in Duffield, VA for permission to sample in the Panel and Bolling Caves, the John C. Buchanan chair of biology endowment for funding, and James A. Nienow of Valdosta State University for supplying periphytometers. We also thank Teresa L. Brown of the University of Virginia's College at Wise for critical reading of the manuscript.	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Microbiol. Rep.	AUG	2022	14	4					538	548		10.1111/1758-2229.13060	http://dx.doi.org/10.1111/1758-2229.13060		APR 2022	11	Environmental Sciences; Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Microbiology	3D5SQ	35388620	Green Published			2025-03-11	WOS:000778694600001
J	Sehein, TR; Gast, RJ; Pachiadaki, M; Guillou, L; Edgcomb, VP				Sehein, Taylor R.; Gast, Rebecca J.; Pachiadaki, Maria; Guillou, Laure; Edgcomb, Virginia P.			Parasitic infections by Group II Syndiniales target selected dinoflagellate host populations within diverse protist assemblages in a model coastal pond	ENVIRONMENTAL MICROBIOLOGY			English	Article							MARINE MAGNETOTACTIC BACTERIA; PICOEUKARYOTIC DIVERSITY; AMOEBOPHRYA DINOPHYTA; GENETIC DIVERSITY; CHESAPEAKE BAY; RIVER ESTUARY; SALT POND; DIATOMS; COMMUNITIES; SHALLOW	Protists are integral to marine food webs and biogeochemical cycles; however, there is a paucity of data describing specific ecological niches for some of the most abundant taxa in marker gene libraries. Syndiniales are one such group, often representing the majority of sequence reads recovered from picoplankton samples across the global ocean. However, the prevalence and impacts of syndinian parasitism in marine environments remain unclear. We began to address these critical knowledge gaps by generating a high-resolution time series (March-October 2018) in a productive coastal pond. Seasonal shifts in protist populations, including parasitic Syndiniales, were documented during periods of higher primary productivity and increased summer temperature-driven stratification. Elevated concentrations of infected hosts and free-living parasite spores occurred at nearly monthly intervals in July, August, and September. We suggest intensifying stratification during this period correlated with the increased prevalence of dinoflagellates that were parasitized by Group II Syndiniales. Infections in some protist populations were comparable to previously reported large single-taxon dinoflagellate blooms. Infection dynamics in Salt Pond demonstrated the propagation of syndinian parasites through mixed protist assemblages and highlighted patterns of host/parasite interactions that better reflect many other marine environments where single taxon blooms are uncommon.	[Sehein, Taylor R.] MIT WHOI Joint Program Biol Oceanog, Cambridge, MA 02139 USA; [Sehein, Taylor R.] MIT WHOI Joint Program Biol Oceanog, Woods Hole, MA 02543 USA; [Gast, Rebecca J.; Pachiadaki, Maria] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA; [Guillou, Laure] Sorbonne Univ, Roscoff, France; [Guillou, Laure] CNRS, Stn Biol Roscoff, UMR7144, Roscoff, France; [Edgcomb, Virginia P.] Woods Hole Oceanog Inst, Dept Geol & Geophys, Woods Hole, MA 02543 USA	Woods Hole Oceanographic Institution; Sorbonne Universite; Sorbonne Universite; Centre National de la Recherche Scientifique (CNRS); CNRS - Institute of Ecology & Environment (INEE); Woods Hole Oceanographic Institution	Sehein, TR (通讯作者)，MIT WHOI Joint Program Biol Oceanog, Cambridge, MA 02139 USA.; Sehein, TR (通讯作者)，MIT WHOI Joint Program Biol Oceanog, Woods Hole, MA 02543 USA.	tsehein@whoi.edu	Sehein, Taylor/HJI-8995-2023; Edgcomb, Virginia/Q-2434-2019; Pachiadaki, Maria/AAW-2640-2021	Guillou, Laure/0000-0003-1032-7958	National Science Foundation Biological Oceanography [OCE-1851012]; National Science Foundation Graduate Research Fellowship [1745302]	National Science Foundation Biological Oceanography(National Science Foundation (NSF)NSF - Directorate for Geosciences (GEO)); National Science Foundation Graduate Research Fellowship(National Science Foundation (NSF))	The authors would like to thank David Beaudoin, Emily Maness, Sarah Lott, Emma Keeler, Rebecca Cox, and Carmine Riccardi for their assistance collecting and processing samples. Thank you to Dr. Jeff Donnelly and Ed Lott for donating boats for sample collection and the occasional rescue. Thank you to Dr. Sarah Hu for her guidance analysing marker gene libraries and for determining patterns of cooccurring taxa. The authors thank Dr. Paraskevi Mara for her helpful comments on the manuscript and assistance in the field. This material is based upon work supported by the National Science Foundation Biological Oceanography OCE-1851012 to R.G., M.P. and V.E. and by the National Science Foundation Graduate Research Fellowship under Grant No. 1745302.	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APR	2022	24	4					1818	1834		10.1111/1462-2920.15977	http://dx.doi.org/10.1111/1462-2920.15977		APR 2022	17	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	0U9TT	35315564				2025-03-11	WOS:000777558600001
J	Terenko, G; Krakhmalnyi, A				Terenko, Galyna; Krakhmalnyi, Alexander			Red tide of <i>Lingulodinium polyedrum</i> (Dinophyceae) in Odesa Bay (Black Sea)	TURKISH JOURNAL OF FISHERIES AND AQUATIC SCIENCES			English	Article						Harmful Algae Bloom; Morphology; Climate changes; Bioluminescence	PHYTOPLANKTON; YESSOTOXINS; DYNAMICS	One of the most massive red tides in Odessa Bay was observed in September-October 2020. It was caused by a toxic dinoflagellate Lingulodinium polyedrum (Stein) Dodge. The maximum abundance (56.1x10(6) cells L-1) of L. polyedrum was registered at the Odessa port area on October 6, when the water temperature and the salinity were 19.7 degrees C and 14.3 parts per thousand, respectively. The red tide was so huge and dense that the water glowed at night due to the bioluminescence characteristic of this species. The article briefly describes the history of the study of L. polyedrum in this area and provides a detailed morphological description with original photographs of this species sampled from the bloom. We associate the appearance of the red tide with an increased temperature of sea water and air, a high content of nutrients, the presence of viable L. polyedrum cysts, and a slight decrease in salinity in the bay during the period of a mass development of the species in autumn of 2020. The red tide was accompanied by Protoperidinium steini, P. divergens, Prorocentrum cordatum, P. minimum, P. micans, Gonyaulas scrippsae, Diplopsalis lenticula, Azadinium spinosum, Dinophysis rotundata, D. acuminata, Oblea rotunda, Scrippsiella trochoidea, and Tripos furca.	[Terenko, Galyna] Ukrainian Sci Ctr Ecol Sea, Sci Studies & Protect Marine Bioceonoses, Odessa, Ukraine; [Krakhmalnyi, Alexander] Natl Acad Sci Ukraine, Inst Evolutionary Ecol, Kiev, Ukraine	Ukrainian Scientific Center of Ecology of the Sea (UkrSCES); National Academy of Sciences Ukraine	Terenko, G (通讯作者)，Ukrainian Sci Ctr Ecol Sea, Sci Studies & Protect Marine Bioceonoses, Odessa, Ukraine.	terenkogalina@gmail.com	Krakhmalnyi, Aleksandr/AAD-7984-2020	Krakhmalnyi, Aleksandr/0000-0003-2068-8669; Teren'ko, Galina/0000-0002-5109-337X				Al-Yamani F.Y., 2019, MARINE PHYTOPLANKTON; Amorim A., 2001, Harmful Algal Blooms 2000, P133; [Anonymous], 1998, 7 CONVEGNO NAZIONALE; Bennouna A, 2002, OCEANOL ACTA, V25, P159, DOI 10.1016/S0399-1784(02)01191-X; BRUNO M, 1990, TOXICON, V28, P1113, DOI 10.1016/0041-0101(90)90150-6; DODGE JD, 1989, BOT MAR, V32, P275, DOI 10.1515/botm.1989.32.4.275; Faust Maria A., 2002, Contributions from the United States National Herbarium, V42, P1; Fedorov V. D., 1979, METHODS STUDYING PHY; FRITZ L, 1985, J PHYCOL, V21, P662, DOI 10.1111/j.0022-3646.1985.00662.x; Hallegraeff G.M., 2003, Monographs on Oceanographic Methodology, V11, P25; Kim Keun-Yong, 2005, Algae, V20, P299; KOFOID C.A., 1911, U CALIFORNIA PUBLICA, V8, P187; Kofoid Charles Atwood, 1909, Archiv fuer Protistenkunde Jena, V16; Krakhmalnyi A.F., 2018, Algologia, V28, P428; Morales-Ramírez A, 2001, REV BIOL TROP, V49, P19; Nesterova D.A., 2010, Algologia, V20, P300; NESTEROVA D A, 1985, Gidrobiologicheskii Zhurnal, V21, P44; Nesterova D.A., 2001, Algologiya, V11, P502; NESTEROVA DA, 1979, BIOL MORYA-VLAD+, P24; Nikonova S.E, 2008, SEVASTOPOL, V17, P362; Paz B, 2004, TOXICON, V44, P251, DOI 10.1016/j.toxicon.2004.05.021; Paz B, 2008, MAR DRUGS, V6, P73, DOI [10.3390/md20080005, 10.3390/md6020073]; Peter C, 2018, HARMFUL ALGAE, V78, P9, DOI 10.1016/j.hal.2018.07.001; Ryabushko L.I., 2003, POTENTIALLY HARMFUL; Salgado P, 2011, GAYANA BOT, V68, P106, DOI 10.4067/S0717-66432011000100012; Skolka H., 1969, CERCETARI MARINE, V1, P59; Sorokin Y.I., 1979, Hydrobiology, V15, P25; Terenko L.M., 2001, SCI NOTES V GNATIUK, P160; Terenko L.M., 2008, MARINE ECOLOGICAL J, V2, P76; Terenko L, 2009, OCEANOL HYDROBIOL ST, V38, P107; Velikova V, 1999, WATER SCI TECHNOL, V39, P27, DOI 10.2166/wst.1999.0378; Vershinin AO, 2005, OCEANOLOGY+, V45, P224; Wood E. J. F., 1968, Dinoflagellates of the Caribbean Sea and adjacent areas; Zernov S.A., 1913, W IMP ACAD SCI PHYS, V32	34	5	5	1	19	CENTRAL FISHERIES RESEARCH INST	TRABZON	PO BOX 129, TRABZON, 61001, TURKEY	1303-2712	2149-181X		TURK J FISH AQUAT SC	Turk. J. Fish. Quat. Sci.	APR	2022	22	4							TRJFAS20312	10.4194/TRJFAS20312	http://dx.doi.org/10.4194/TRJFAS20312			6	Fisheries; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries; Marine & Freshwater Biology	XU6TA		gold			2025-03-11	WOS:000734393300002
J	Nogueira, E; Bravo, ; Montero, P; Díaz-Tapia, P; Calvo, S; Ben-Gigirey, B; Figueroa, R; Garrido, JL; Ramilo, ; Lluch, N; Rossignoli, AE; Riobó, P; Rodríguez, F				Nogueira, E.; Bravo, I; Montero, P.; Diaz-Tapia, P.; Calvo, S.; Ben-Gigirey, B.; Figueroa, R., I; Garrido, J. L.; Ramilo, I; Lluch, N.; Rossignoli, A. E.; Riobo, P.; Rodriguez, F.			HABs in coastal upwelling systems: Insights from an exceptional red tide of the toxigenic dinoflagellate<i> Alexandrium</i><i> minutum</i>	ECOLOGICAL INDICATORS			English	Article						Alexandrium minutum; Time-series; Model simulations; Galician Rias; NW Iberian Peninsula; Paralytic shellfish poisoning; Harmful algal bloom	HARMFUL ALGAL BLOOMS; GENUS ALEXANDRIUM; NORTH-ATLANTIC; CLIMATE-CHANGE; RESTING CYSTS; NW; PHYTOPLANKTON; COMMUNITY; ESTUARY; DINOPHYCEAE	Alexandrium minutum blooms generally occur in semi-enclosed sites such as estuaries, harbours and lagoons, where enhanced stratification, restricted circulation and accumulation of resting cysts in the sediment set suitable habitat conditions for the proliferation of this paralytic shellfish poisoning toxigenic species. In the Galician Rias Baixas (NW Iberian Peninsula), according to weekly time-series between 1994 and 2020, blooms of A. minutum were recurrent in small, shallow estuarine bays inside the Rias de Vigo and Pontevedra, but rarely detected, and if so at low concentrations, out of these environments. However, from May to July 2018 it developed as usual in the small inner bays but then spread over both Rias (Vigo and Pontevedra) causing discoloured waters during one month and prolonged harvesting closures. Meteorological conditions during that period (rains / runoff higher than climatological averages, sustained temperature increment and oscillating wind pattern -i.e., series of upwelling-relaxation cycles), fostered optimal circumstances for the development of that extensive and massive proliferation: strong vertical stratification and the alternation of retention and dispersion processes. Simulations from a particle tracking model portrayed the observed bloom development phases: onset and development inside a small inner bay; transport within the surface layer, from these sites towards the interior parts of the Ria; and dispersion all over the embayment. Seedbeds with high concentrations of resting cysts were detected several months after the bloom, which may have favoured flourishment of A. minutum in the following two years, markedly in 2020. The present work contributes to the general understanding of the dynamics of harmful algal blooms (HABs), from which surveillance indicators of the state of marine ecosystems and their evolution can be derived. We hypothesize that the intensity and frequency of A. minutum proliferations in the Galician Rias could increase under projected climate trends.	[Nogueira, E.; Bravo, I; Ben-Gigirey, B.; Figueroa, R., I; Ramilo, I; Lluch, N.; Rossignoli, A. E.; Rodriguez, F.] Ctr Oceanog Vigo, Ctr Nacl Inst Espanol Oceanog IEO CSIC, Vigo 36390, Spain; [Montero, P.; Calvo, S.] Inst Tecnolox Control Medio Marino Galicia, Vilagarcia De Arousa 36611, Spain; [Diaz-Tapia, P.] Ctr Oceanog A Coruna, Ctr Nacl Inst Espanol Oceanog IEO CSIC, La Coruna 15001, Spain; [Garrido, J. L.; Riobo, P.] Consejo Super Invest Cient IIM CSIC, Inst Invest Marinas, Vigo 36208, Spain; [Ben-Gigirey, B.] Univ Vigo, European Union Reference Lab Marine Biotoxins, Citexvi Campus, Vigo 36310, Spain; [Rossignoli, A. E.] Ctr Investigac Marinas CIMA, Vilanova De Arousa 36620, Spain	Spanish Institute of Oceanography; Spanish Institute of Oceanography; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM); Universidade de Vigo	Rodríguez, F (通讯作者)，Ctr Oceanog Vigo, Ctr Nacl Inst Espanol Oceanog IEO CSIC, Vigo 36390, Spain.	francisco.rodriguez@ieo.csic.es	Nogueira García, Enrique/R-6534-2018; Ben-Gigirey, Begoña/ABF-5281-2021; Montero, Pedro/K-7558-2014; Díaz-Tapia, Pilar/A-6775-2014; Riobó, Pilar/K-1945-2017; Escudeiro Rossignoli, Araceli/ABF-5476-2020; Garrido, Jose Luis/L-6282-2014; Figueroa, Rosa/M-7598-2015; Rodriguez, Francisco/A-5934-2019	Escudeiro Rossignoli, Araceli/0000-0002-6052-9067; Garrido, Jose Luis/0000-0001-8773-1866; Figueroa, Rosa/0000-0001-9944-7993; Montero, Pedro/0000-0003-0081-8219; Rodriguez, Francisco/0000-0002-6918-4771; Nogueira, Enrique/0000-0002-4222-928X; Diaz Tapia, Pilar/0000-0003-4680-4867; Ben-Gigirey, Begona/0000-0001-8164-5801	Spanish national project DIANAS (MICINN) [CTM2017-86066-R]; CCVIEO (Instituto Espanol de Oceanografia); Xunta de Galicia program [03 IN858A 2019 1630129]; Axencia Galega de Innovacion (agreement GAIN-IEO)	Spanish national project DIANAS (MICINN); CCVIEO (Instituto Espanol de Oceanografia); Xunta de Galicia program; Axencia Galega de Innovacion (agreement GAIN-IEO)	We acknowledge Y. Pazos, F. Amoedo, A. B ' ertolo, P. Garcia, I. Lemos, M. P ' erez and S. Roura from "Unidad de Oceanografia y Fitoplancton" (INTECMAR), for weekly cell count data obtained on course of the Galician monitoring programme. We wish also to thank several public institutions which collect and offer online environmental data included in this study: hydrographical and meteorological variables (INTECMAR and MeteoGalicia) and rivers flow data supplied by Augas de Galicia. We acknowledge also P. Loures and P. Rial for technical assistance with laboratory cultures, and C. Carballeira for technical assistance with HPLC pigment analyses. We greatly appreciate also the collaboration of J. Hern ' andez-Urcera and M. Garci (IIM-CSIC) for scuba dive samples in the Vigo marina, and M. Garcia-Portela, L. Feans, and M. Pazos for collaboration during red tide sampling. We thank Marta M. Varela for her helpful comments on the manuscript. High-performance computing analysis was run by means of the remote supercomputing resources of the Centro de Supercomputaci ' on de Galicia (CESGA). This work was funded by the Spanish national project DIANAS (CTM2017-86066-R, MICINN) and CCVIEO (Instituto Espa ~nol de Oceanografia). PD-T was supported by the Xunta de Galicia program "Talento Senior" (N. contract 03 IN858A 2019 1630129) with additional funds of the Axencia Galega de Innovacion (agreement GAIN-IEO). This is a contribution of Unidad Asociada IEO-CSIC Microalgas Nocivas.	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Indic.	APR	2022	137								108790	10.1016/j.ecolind.2022.108790	http://dx.doi.org/10.1016/j.ecolind.2022.108790		MAR 2022	14	Biodiversity Conservation; Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation; Environmental Sciences & Ecology	1Y0MA		Green Published, gold			2025-03-11	WOS:000807839300001
J	Tang, YZ; Shang, LX; Dobbs, FC				Tang, Ying Zhong; Shang, Lixia; Dobbs, Fred C.			Measuring viability of dinoflagellate cysts and diatoms with stains to test the efficiency of facsimile treatments possibly applicable to ships' ballast water and sediment	HARMFUL ALGAE			English	Article						Harmful algal blooms (HABs); Viability; Neutral Red (NR); Evans Blue (EB); Gymnodinium catenatum; Corethron hystrix	GREEN AUTOFLUORESCENCE; GYMNODINIUM-CATENATUM; NEUTRAL RED; EVANS BLUE; PHYTOPLANKTON; TRANSPORT; MICROALGAE; PLANKTON; EFFICACY; EXCHANGE	Expansion of harmful algal bloom (HAB) species through ships' ballast water and sediment has been an increasing concern. Determining whether a microalgal cell, particularly for the toxic and HAB-forming species, is "viable" or "dead" is fundamental to understanding the effectiveness of the many ballast-water treatments that have been considered. To this end, we screened a variety of stains to assess the viability of dinoflagellate (Gymnodinium catenatum, GC) cysts and diatom (Corethron hystrix) vegetative cells to test the efficiency of ballast water treatments. Results showed that the stains fluorescing red or green are not sound candidates for viability measurements due to the interference of chlorophyll-induced red fluorescence or cytosolic green auto fluorescence, while the use of 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide is limited by its toxicity, pseudo-positive judgment and the consequent confusion between cysts and vegetative cells. We further demonstrated that the stain Neutral Red (NR) is a sound candidate as the "vital stain" and can be easily applied for functionally defining the viability of both dinoflagellate cysts and diatoms. Another stain, the Evans Blue (EB), could be used as a "mortal stain" for the vegetative diatom cells but not a sensitive indicator of viability for GC cysts. The NR staining for GC cysts generally needs a higher dosage (0.005%) and longer staining time (24 h) than that were used for staining zooplankton, diatoms, and vegetative cells of dinoflagellates. In all cases, EB staining defined a "percentage of viable cells" significantly higher than that defined by NR. We conclude that the viability of a population is highly dependent on the species of stains used thus must be referred as a method defined indicator.	[Tang, Ying Zhong; Shang, Lixia] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Tang, Ying Zhong; Shang, Lixia] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Tang, Ying Zhong; Shang, Lixia] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Dobbs, Fred C.] Old Dominion Univ, Dept Ocean & Earth Sci, 4600 Elkhorn Ave, Norfolk, VA 23529 USA	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Old Dominion University	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.; Dobbs, FC (通讯作者)，Old Dominion Univ, Dept Ocean & Earth Sci, 4600 Elkhorn Ave, Norfolk, VA 23529 USA.	yingzhong.tang@qdio.ac.cn; fdobbs@odu.edu			National Oceanic and Atmospheric Administration (NOAA) , U.S. Department of Commerce (DOC) [NA04OAR4170146]; National Natural Science Foundation of China (NSFC) [41976134]	National Oceanic and Atmospheric Administration (NOAA) , U.S. Department of Commerce (DOC)(National Oceanic Atmospheric Admin (NOAA) - USA); National Natural Science Foundation of China (NSFC)(National Natural Science Foundation of China (NSFC))	This publication was prepared by the authors under the grant NA04OAR4170146 from the National Oceanic and Atmospheric Administration (NOAA) , U.S. Department of Commerce (DOC) , awarded to FCD, and the grant 41976134 from the National Natural Science Foundation of China (NSFC) awarded to YZT. The statements, findings, conclusions, and recommendations are those of the authors and do not necessarily reflect the views of NOAA, DOC, or NSFC. We express sincere gratitude to Dr. Martina Doblin for her invaluable help to make this study possible.	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J	Hu, ZX; Liu, YY; Deng, YY; Tang, YZ				Hu, Zhangxi; Liu, Yuyang; Deng, Yunyan; Tang, Ying Zhong			The Notorious Harmful Algal Blooms-Forming Dinoflagellate <i>Prorocentrum donghaiense</i> Produces Sexual Resting Cysts, Which Widely Distribute Along the Coastal Marine Sediment of China	FRONTIERS IN MARINE SCIENCE			English	Article						resting cyst mapping; fluorescence in situ hybridization (FISH); harmful algal blooms (HABs); life cycle (history); Prorocentrum donghaiense	MULTIPLE SEQUENCE ALIGNMENT; TOXIC DINOFLAGELLATE; GYMNODINIUM-CATENATUM; ANNOTATED CHECKLIST; TIME-SERIES; NEW-ZEALAND; YELLOW SEA; PHYTOPLANKTON; DINOPHYCEAE; IDENTIFICATION	The armored dinoflagellate Prorocentrum donghaiense distributes globally and has been forming large scale and dense ecosystem disruptive algal blooms (EDABs) in the East China Sea (ECS) almost every year since the 1990s and often in other coastal waters of the world. It has long been a mystery, however, about how these blooms were seeded or where the initiating population came from. In this work, we provide a more feasible and universal seeding mechanism, formation of resting cysts. Using light microscopy, we confirmed sexual reproduction according to the observations of mating cells in pairs, planozygotes having two similar flagella, darkened and thick-walled resting cysts with smooth surface, and germination processes of resting cyst. Using morpho-molecular detection, we confirmed P. donghaiense resting cyst in the field, including the positive detections of polymerase chain reaction (PCR) using species-specific primers and then the fluorescence in situ hybridization (FISH) using species-specific probes, and further confirmation via single-cell sequencing for the individual FISH-detected cysts. Furthermore, the distribution and abundance of P. donghaiense cysts along the coast of China Seas were mapped using an approach combining real-time PCR (qPCR) and FISH, with the qPCR quantification taking into account the doubled copy number of LSU rRNA gene in resting cysts. Resting cysts of this species were found to widely distribute in the Yellow Sea (YS), ECS, and South China Sea (SCS), with a relatively low abundance at most sampling sites, but to be absent in the eight samples from the Bohai Sea (BS). Resting cyst production confirmed with evidences from both laboratory cultures and field sediments and the extensive distribution of cysts in the China Seas, as the first case in planktonic species of Prorocentrum, not only filled up a knowledge gap about the life history of P. donghaiense but also provided a possible mechanistic facility to seed the annual blooms in the ECS and the global distribution of the species.	[Hu, Zhangxi; Liu, Yuyang; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Hu, Zhangxi; Liu, Yuyang; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Li, Yang/KFB-5350-2024		National Science Foundation of China [41476142]; Science & Technology Basic Resources Investigation Program of China [2018FY100200]; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) [2018SDKJ0504-2]; National Natural Science Foundation of China [41976134, 41776125]; Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao) [LMEES-YTSP-2018-01-04]	National Science Foundation of China(National Natural Science Foundation of China (NSFC)); Science & Technology Basic Resources Investigation Program of China; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao)	& nbsp;This research was funded by the National Science Foundation of China, grant number 41476142, the Science & Technology Basic Resources Investigation Program of China, grant number 2018FY100200, the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao), grant number 2018SDKJ0504-2, the National Natural Science Foundation of China, grant numbers 41976134 and 41776125, and the Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao), grant number LMEES-YTSP-2018-01-04.	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Mar. Sci.	FEB 28	2022	9								826736	10.3389/fmars.2022.826736	http://dx.doi.org/10.3389/fmars.2022.826736			16	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	ZZ0AU		gold			2025-03-11	WOS:000772940600001
J	Rodrigues, RV; Patil, JS; Anil, AC				Rodrigues, R., V; Patil, J. S.; Anil, A. C.			Dinoflagellates cyst assemblage concerning trophic index for eutrophication from major ports along the west coast of India	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate cyst; Ports; Eutrophication; Trophic index; Harmful Algal Blooms	HARMFUL ALGAL BLOOMS; RECENT SEDIMENTS; WATER-QUALITY; EAST-COAST; SOUTHWEST COAST; SPATIAL-DISTRIBUTION; ESTUARINE SEDIMENTS; COCHIN BACKWATERS; SURFACE SEDIMENTS; TOKYO-BAY	An overview of dinoflagellates cysts assemblage is presented as a trophic index for three monsoon-influenced estuarine and marine ports along the Indian coast. The cyst distribution (including harmful species) showed a trend of highest abundance and species number in highly eutrophicated estuarine (Cochin-south) followed by medium (New-Mangalore-central) and low (Kandla-north) levels of eutrophicated marine ports. The investigation revealed four new species in the region (Bitectatodinium spongium, Gonyaulax elongatum, Brigantedinium sp. and potential harmful species Blixaea quinquecornis-cyst similar to planktonic). Autotrophs dominance in the highly productive Cochin and New-Mangalore ports reveals that, in eutrophic systems, heterotrophs need not always be dominant. The indicator taxa (Polykrikos, Protoperidnium, and Lingulodinium) presence in high density indicated a eutrophic system. This study concludes cyst (species numbers/Fisher-alpha index/indicator species) as potential eutrophication proxies and emphasizes greater harmful-algal-bloom risks in the high trophic-index ports (Cochin and New-Mangalore).	[Rodrigues, R., V; Patil, J. S.; Anil, A. C.] CSIR Natl Inst Oceanog, Panaji 403004, Goa, India; [Rodrigues, R., V] Goa Univ, Sch Earth Ocean & Atmospher Sci, Taleigao Plateau 403206, Goa, India	Council of Scientific & Industrial Research (CSIR) - India; CSIR - National Institute of Oceanography (NIO); Goa University	Patil, JS (通讯作者)，CSIR Natl Inst Oceanog, Panaji 403004, Goa, India.	patilj@nio.org			DG Shipping, Ministry of Shipping, Govt. of India [6880]; UGC, India [6880];  [GAP 2429]	DG Shipping, Ministry of Shipping, Govt. of India; UGC, India(University Grants Commission, India); 	The authors are grateful to the Director of CSIR-National Institute of Oceanography for providing support and encouragement. The authors thank DG Shipping, Ministry of Shipping, Govt. of India for providing the funding for BAMPI-Ballast Water Management Program India (GAP 2429) . We thank Dr. S.S. Sawant, Dr. D. Desai, Dr. L. Khandeparker, Mr. K. Venkat, and Mr. K. Mapari for coordinating Port Biological Baseline Survey (PBBS) at Cochin, New Mangalore, and Kandla port. We also thank the project staff, who were involved in the PBBS, for their help during sampling. We acknowledge two reviewers for their suggestions to improve the manuscript. First author also acknowledges UGC, India for Maulana Azad National Fellowships. This is an NIO contribution No. 6880.	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Pollut. Bull.	JUN	2022	176								113423	10.1016/j.marpolbul.2022.113423	http://dx.doi.org/10.1016/j.marpolbul.2022.113423		FEB 2022	14	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	1A8PB	35219079				2025-03-11	WOS:000792010400004
J	Mohamed, Z; Alamri, S; Hashem, M				Mohamed, Zakaria; Alamri, Saad; Hashem, Mohamed			Inhibitory effects of the brown macroalga <i>Turbinaria ornata</i> on cyst germination and progeny cells of five harmful dinoflagellate species	OCEANOLOGIA			English	Article						Cysts; Dinoflagellates; Harmful blooms; Macroalgal allelopathy	RED-SEA; HETEROSIGMA-AKASHIWO; RESTING CYSTS; BLOOMS; DINOPHYCEAE; MICROALGAE; EXTRACTS; COASTS	This study investigates the inhibitory effects of thalli and their extracts of the macroalga Turbinaria ornata on the germination of dinoflagellate cysts, previously isolated from Red Sea surface sediments . The experiments were conducted on cysts of five harmful dinoflagellate species including Alexandrium catenella, Cochlodinium polykrikos, Dinophysis accuminata, Prorocentrum cordatum and Scrippsiella trochoidea. The results showed neither macroalgal thalli nor their extracts had direct impact on the cyst germination of all species. Instead, these macroalgal materials remarkably affected the germling viability and culturability of progeny cells of these cysts. Dry macroalgal thalli exhibited stronger inhibitory effects on germling viability and cell culturability (IC50= 0.235-0.543, 0.385-1.43 mg mL (-1), respectively) than fresh thalli (IC50= 2.201-4.716, 2.17-7.18 mg mL (-1), respectively). The macroalgal ethanol extract was approximately 2-5 times more effective (IC50 = 0.012-0.047 and 0.024- 0.089 mg mL (-1), respectively) than aqueous extract (IC50 = 0.04-0.1 and 0.054-0.207 mg mL (-1), respectively) against the germling viability and vegetative progeny cells of all cyst species. Among different species, A. catenella and C. polykrikos germlings were more sensitive to macroalgal thalli and their extracts than those of S. trochoidea, P. cordatum and D. acuminata. Meanwhile, progeny cells of A. catenella exhibited the highest sensitivity to all macroalgal materials. Our results suggest that the use of T. ornata may be a promising strategy for inhibiting the division of progeny cells of dinoflagellate cysts and impairing the recurrence of HABs in confined coastal areas. (c) 2021 Institute of Oceanology of the Polish Academy of Sciences. Production and hosting by Elsevier B.V. This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/ ).	[Mohamed, Zakaria] Sohag Univ, Fac Sci, Dept Bot, Sohag 82524, Egypt; [Alamri, Saad; Hashem, Mohamed] King Khalid Univ, Fac Sci, Biol Sci Dept, Abha, Saudi Arabia; [Hashem, Mohamed] Assiut Univ, Fac Sci, Bot & Microbiol Dept, Assiut, Egypt	Egyptian Knowledge Bank (EKB); Sohag University; King Khalid University; Egyptian Knowledge Bank (EKB); Assiut University	Mohamed, Z (通讯作者)，Sohag Univ, Fac Sci, Dept Bot, Sohag 82524, Egypt.	Zakaria.attia@science.sohag.edu.eg	Alamri, Saad/AGM-5459-2022; Hashem, Mohamed/AAG-3894-2020; Hashem, Mohamed/JVE-0875-2024	Hashem, Mohamed/0000-0003-2593-3387	Deanship of Scientific Research, King Khalid University [R.G.P. 1/25/42]	Deanship of Scientific Research, King Khalid University(King Khalid University)	The authors extend their appreciation to the Deanship of Scientific Research, King Khalid University for funding this work through research groups program under grant number R.G.P. 1/25/42. The authors have approved the final article.	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J	Potvin, M; Rautio, M; Lovejoy, C				Potvin, Marianne; Rautio, Milla; Lovejoy, Connie			Freshwater Microbial Eukaryotic Core Communities, Open-Water and Under-Ice Specialists in Southern Victoria Island Lakes (Ekaluktutiak, NU, Canada)	FRONTIERS IN MICROBIOLOGY			English	Article						Arctic; chrysophytes; cryptophytes; season; ciliates	RIBOSOMAL-RNA; PERIDINIUM-ACICULIFERUM; CRYPTOCARYON-IRRITANS; PHYLOGENETIC ANALYSIS; RESTING CYSTS; ECOSYSTEMS; GEN.; STRATEGY; SHALLOW; IMPACT	Across much of the Arctic, lakes and ponds dominate the landscape. Starting in late September, the lakes are covered in ice, with ice persisting well into June or early July. In summer, the lakes are highly productive, supporting waterfowl and fish populations. However, little is known about the diversity and ecology of microscopic life in the lakes that influence biogeochemical cycles and contribute to ecosystem services. Even less is known about the prevalence of species that are characteristic of the seasons or whether some species persist year-round under both ice cover and summer open-water conditions. To begin to address these knowledge gaps, we sampled 10 morphometrically diverse lakes in the region of Ekaluktutiak (Cambridge Bay), on southern Victoria Island (NU, Canada). We focused on Greiner Lake, the lakes connected to it, isolated ponds, and two nearby larger lakes outside the Greiner watershed. The largest lakes sampled were Tahiryuaq (Ferguson Lake) and the nearby Spawning Lake, which support commercial sea-run Arctic char (Salvelinus alpinus) fisheries. Samples for nucleic acids were collected from the lakes along with limnological metadata. Microbial eukaryotes were identified with high-throughput amplicon sequencing targeting the V4 region of the 18S rRNA gene. Ciliates, dinoflagellates, chrysophytes, and cryptophytes dominated the lake assemblages. A Bray-Curtis dissimilarity matrix separated communities into under-ice and open-water clusters, with additional separation by superficial lake area. In all, 133 operational taxonomic units (OTUs) occurred either in all under-ice or all open-water samples and were considered "core" microbial species or ecotypes. These were further characterized as seasonal indicators. Ten of the OTUs were characteristic of all lakes and all seasons sampled. Eight of these were cryptophytes, suggesting diverse functional capacity within the lineage. The core open-water indicators were mostly chrysophytes, with a few ciliates and uncharacterized Cercozoa, suggesting that summer communities are mixotrophic with contributions by heterotrophic taxa. The core under-ice indicators included a dozen ciliates along with chrysophytes, cryptomonads, and dinoflagellates, indicating a more heterotrophic community augmented by mixotrophic taxa in winter.	[Potvin, Marianne; Lovejoy, Connie] Univ Laval, Quebec Ocean, Quebec City, PQ, Canada; [Potvin, Marianne; Lovejoy, Connie] Univ Laval, Inst Integrat & Syst IBIS, Quebec City, PQ, Canada; [Rautio, Milla] Univ Quebec Chicoutimi, Dept Sci Fondament, Saguenay, PQ, Canada; [Rautio, Milla] Grp Rech Interuniv Limnol GRIL, Montreal, PQ, Canada; [Rautio, Milla] Ctr Etudes Nord CEN, Quebec City, PQ, Canada	Laval University; Laval University; University of Quebec; University of Quebec Chicoutimi	Lovejoy, C (通讯作者)，Univ Laval, Quebec Ocean, Quebec City, PQ, Canada.; Lovejoy, C (通讯作者)，Univ Laval, Inst Integrat & Syst IBIS, Quebec City, PQ, Canada.	connie.lovejoy@bio.ulaval.ca	Lovejoy, Connie/A-3756-2008		Polar Knowledge Canada; Natural Sciences and Engineering Research Council of Canada (NSERC); ArcticNet, a Canadian Center of Research and Excellence; Fonds de recherche du Quebec-Nature et Technologies (FRQNT)	Polar Knowledge Canada; Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)); ArcticNet, a Canadian Center of Research and Excellence; Fonds de recherche du Quebec-Nature et Technologies (FRQNT)	The study was funded by Polar Knowledge Canada, the Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery, Northern Supplement and Strategic Projects grants to CL and MR, and ArcticNet, a Canadian Center of Research and Excellence. Additional support was by way of the Fonds de recherche du Quebec-Nature et Technologies (FRQNT) to Quebec Ocean and Center Etudes Nordiques. The analyses were conducted using Compute Canada facilities.	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Microbiol.	FEB 11	2022	12								786094	10.3389/fmicb.2021.786094	http://dx.doi.org/10.3389/fmicb.2021.786094			17	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	ZI2PO	35222298	Green Published, gold			2025-03-11	WOS:000761468900001
J	Remize, M; Planchon, F; Loh, A; Le Grand, F; Bideau, A; Puccinelli, E; Volety, A; Soudant, P				Remize, Marine; Planchon, Frederic; Loh, Ai Ning; Le Grand, Fabienne; Bideau, Antoine; Puccinelli, Eleonora; Volety, Aswani; Soudant, Philippe			Origin and fate of long-chain polyunsaturated fatty acids in the Kerguelen Islands region (Southern Ocean) in late summer	JOURNAL OF MARINE SYSTEMS			English	Article						Essential fatty acids; Vertical distribution; Fatty acid export; Phytoplankton diversity; Diatoms; Heterotrophic interactions; Nutritional quality	NATURAL IRON-FERTILIZATION; DIATOM RESTING SPORES; EUPHAUSIA-SUPERBA DANA; SEA-ICE DIATOM; COMMUNITY STRUCTURE; FOOD-WEB; PHAEOCYSTIS-POUCHETII; PHYTOPLANKTON BLOOM; LIPID-COMPOSITION; CARBON EXPORT	Long-chain polyunsaturated fatty acids (LC-PUFA) are molecules produced at the basis of marine food webs and essential for ecosystem functioning. This study reports detailed fatty acid (FA) composition including the two LCPUFA 20:5n-3 and 22:6n-3, in suspended organic matter (SPOM) from the upper 300 m collected in the Kerguelen Island region in the Southern Ocean during the post-bloom period (February-March 2018; project MOBYDICK). FA profiles were largely dominated by PUFA (53-69% of Total Fatty Acid, TFA) regardless of stations and among PUFA, proportions of LC-PUFA were especially high, making up 27-44% of TFA both in the ML and upper mesopelagic. 20:5n-3 and 22:6n-3 co-occurred in the ML as a result of the post-bloom phytoplankton community showing a mixed composition dominated by small size phytoplankton (prymnesiophytes and prasinophytes) supplying 22:6n-3, and with diatoms in lower proportions supplying 20:5n-3. Elevated levels of LC-PUFA were observed both inside the iron-fertilized area on the Kerguelen Plateau and downstream, and outside in High Nutrient Low Chlorophyll waters located upstream of the Plateau, and appeared unrelated to site. In the upper mesopelagic, both LC-PUFA were maintained at high relative proportions suggesting an efficient and possibly fast vertical transfer from the surface. Transfer with depth seems to proceed via distinct pathways according to LC-PUFA. 20:5n-3 may be exported along with diatoms, presumably in the form of large intact cells, aggregates as well as resting spores. For 22:6n-3, transfer may involve a channeling through the heterotrophic food web resulting in its association with fecal material at depth. Channeling of 22:6n-3 could involve heterotrophic protists such as dinoflagellates and ciliates grazing on small phytoplankton, as well as larger zooplankton such as copepods and salps, possibly feeding on microzooplankton and producing fecal pellets rich in 22:6n-3. According to LC-PUFA content, SPOM present throughout the upper water column (0-300 m) appeared of high nutritional quality both on-and off-plateau, and represented a valuable source of food for secondary consumers and suspension feeders.	[Remize, Marine; Planchon, Frederic; Le Grand, Fabienne; Bideau, Antoine; Puccinelli, Eleonora; Soudant, Philippe] Univ Brest, CNRS, IRD, Ifremer,UMR 6539 LEMAR, F-29280 Plouzane, France; [Remize, Marine; Loh, Ai Ning] Univ North Carolina Wilmington, Dept Earth & Ocean Sci, Ctr Marine Sci, 5600 Marvin K Moss Ln, Wilmington, NC 28403 USA; [Volety, Aswani] Elon Univ, 50 Campus Dr, Elon, NC 27244 USA	Centre National de la Recherche Scientifique (CNRS); Ifremer; Institut de Recherche pour le Developpement (IRD); CNRS - Institute of Ecology & Environment (INEE); Universite de Bretagne Occidentale; University of North Carolina; University of North Carolina Wilmington; Elon University	Planchon, F; Soudant, P (通讯作者)，Univ Brest, CNRS, IRD, Ifremer,UMR 6539 LEMAR, F-29280 Plouzane, France.	frederic.planchon@univ-brest.fr; philippe.soudant@univ-brest.fr	Puccinelli, Eleonora/M-3562-2018	Puccinelli, Eleonora/0000-0002-6144-6650	French oceanographic fleet ("Flotte oceanographique francaise"); French ANR ("Agence Nationale de la Recherche", AAPG 2017 program, MOBYDICK) [ANR-17-CE01-0013]; French Research program of INSU-CNRS LEFE/CYBER ("Les enveloppes fluides et l'environnement" - "Cycles biogeochimiques, environnement et ressources"); University of Brest (UBO, France); Center of Marine Sciences (CMS) of the University of North Carolina Wilmington (UNCW, USA); "Laboratoire d'Excellence" LabexMer [ANR-10-LABX-19]; Walter-Zellidja grant of the Academie Francaise; ISblue project, Interdisciplinary graduate school for the blue planet [ANR-17-EURE-0015]; French government under the program "Investissements d'Avenir"	French oceanographic fleet ("Flotte oceanographique francaise"); French ANR ("Agence Nationale de la Recherche", AAPG 2017 program, MOBYDICK)(Agence Nationale de la Recherche (ANR)Agence nationale pour le developpement de la recherche en sante (ANDRS)Agence Nationale Des Plantes Medicinales Et Aromatiques, ANPMA, Morocco); French Research program of INSU-CNRS LEFE/CYBER ("Les enveloppes fluides et l'environnement" - "Cycles biogeochimiques, environnement et ressources"); University of Brest (UBO, France); Center of Marine Sciences (CMS) of the University of North Carolina Wilmington (UNCW, USA); "Laboratoire d'Excellence" LabexMer; Walter-Zellidja grant of the Academie Francaise; ISblue project, Interdisciplinary graduate school for the blue planet; French government under the program "Investissements d'Avenir"(Agence Nationale de la Recherche (ANR))	We thank B. Queguiner, the PI of the MOBYDICK project, for providing us the opportunity to participate to this cruise, the chief scientist I. Obernosterer and the captain and crew of the R/V Marion Dufresne for their enthusiasm and support aboard during the MOBYDICK-THEMISTO cruise (doi:10.17600/18000403). This work was supported by the French oceanographic fleet ("Flotte oceanographique francaise"), the French ANR ("Agence Nationale de la Recherche", AAPG 2017 program, MOBYDICK Project number: ANR-17-CE01-0013), the French Research program of INSU-CNRS LEFE/CYBER ("Les enveloppes fluides et l'environnement" - "Cycles biog ' eochimiques, environnement et ressources"). Marine Remize PhD fellowship and studies was supported by the University of Brest (UBO, France), the Center of Marine Sciences (CMS) of the University of North Carolina Wilmington (UNCW, USA), the "Laboratoire d'Excellence" LabexMer (ANR-10-LABX-19), and the Walter-Zellidja grant of the Academie Francaise. E. Puccinelli was supported by ISblue project, Interdisciplinary graduate school for the blue planet (ANR-17-EURE-0015) and co-funded by a grant from the French government under the program "Investissements d'Avenir". We would like to thank our colleagues of the Technical Division of the INSU, Emmanuel de Saint-Leger, Lionel Scouarnec, Lionel Fischen, and Olivier Desprez De Gesincourt for their logistical and technical help with the insitu pumps, the colleagues of the UBO Open Factory for their help in designing and preparing the NITEX membranes, and also to Stephane Blain and Bernard Queguiner for their helpful comments and suggestions on the manuscript.	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Mar. Syst.	APR	2022	228								103693	10.1016/j.jmarsys.2021.103693	http://dx.doi.org/10.1016/j.jmarsys.2021.103693		FEB 2022	17	Geosciences, Multidisciplinary; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Geology; Marine & Freshwater Biology; Oceanography	ZO7RU		Bronze, Green Published, Green Submitted			2025-03-11	WOS:000765925400001
J	Rigel, CQ; Javier, H; Ernesto, GM; Rafael, RM				Quezada Rigel, Castaneda; Javier, Helenes; Mendoza Ernesto, Garcia; Mendoza Rafael, Ramirez			Assemblages of dinoflagellate resistance cysts and copepod eggs in superficial sediments at the upper Gulf of California	CONTINENTAL SHELF RESEARCH			English	Article						Autotrophic dinoflagellate cysts; Heterotrophic dinoflagellate cysts; Copepods eggs; Concentrations	RECENT MARINE-SEDIMENTS; RED-TIDE; GYMNODINIUM-CATENATUM; SURFACE SEDIMENTS; PROTOCERATIUM-RETICULATUM; PRIMARY PRODUCTIVITY; EPIPELAGIC COPEPODS; BAJA-CALIFORNIA; LIFE-CYCLE; SALINITY	The diversity, abundance, and geographic distribution of dinoflagellate cysts in recent sediments serve as bioindicators to specific regions' environmental conditions and productivity. We present dinoflagellate cysts assemblages from 53 superficial sediment samples from the upper Gulf of California (uGC) obtained in July 2016 and February 2017. Forty-seven species were identified, of which twenty-seven are considered heterotrophic (Het) and twenty autotrophic (Aut). Ten species of this last group are potentially toxin producers (PTxS). The total concentration (Tot) of cysts in all the samples was 3481 cysts/g in 2016 and 4223 cysts/g in 2017. Aut represented 59%, Het 41%, while the PTxS represented ~36.5% of the Tot cysts. The higher abundance of the Aut is likely to manifest the local high sea surface temperature and salinity. The increase in the Tot of cysts in the 2017 set was related to a Gymnodinium catenatum harmful algal bloom. Copepod eggs abundance was 7137 eggs/ g in 2016 and 6555 eggs/g in 2017. The Aut Gymnodinium spp., Spiniferites spp., Operculodinium spp, and the Het Protoperidinium americanum, Quinquecuspis concreta, Selenopemphix nephroides, Brigantedinium spp., and Echinidinium spp., were typical in both seasons but differed on their concentrations between each season. The cysts distribution between both sampling periods reflects local currents and the sediment dynamics of the uGC, and the high species diversity in this area reflects the elevated primary productivity in this area.	[Quezada Rigel, Castaneda] Ctr Invest Cient & Educ Super Ensenada, Posgrad Ecol Marina, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico; [Javier, Helenes] Ctr Invest Cient & Educ Super Ensenada, Dept Geol, Ciencias Tierra, Carr Ensenada Tijuana 39918, Ensenada 22860, Baja California, Mexico; [Mendoza Ernesto, Garcia] Ctr Invest Cient & Educ Super Ensenada, Dept Oceanog Biol, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico; [Mendoza Rafael, Ramirez] Ctr Invest Cient & Educ Super Ensenada, Dept Oceanog Fis, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico	CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada	Javier, H (通讯作者)，Ctr Invest Cient & Educ Super Ensenada, Dept Geol, Ciencias Tierra, Carr Ensenada Tijuana 39918, Ensenada 22860, Baja California, Mexico.	jhelenes@cicese.mx		Garcia-Mendoza, Ernesto/0000-0003-1738-7419	CONACYT scholarship [24805 - CV617226]; FORDECYT - CONACYT [260040-2015]	CONACYT scholarship(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); FORDECYT - CONACYT	This work was funded by CONACYT scholarship 24805 - CV617226; FORDECYT - CONACYT project number 260040-2015.	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Van Nieuwenhove N, 2020, MAR MICROPALEONTOL, V159, DOI 10.1016/j.marmicro.2019.101814; Vásquez-Bedoya LF, 2008, MAR MICROPALEONTOL, V68, P49, DOI 10.1016/j.marmicro.2008.03.002; Verleye TJ, 2011, MAR MICROPALEONTOL, V78, P65, DOI 10.1016/j.marmicro.2010.10.001; Wood G.D., 1996, PALYNOLOGY PRINCIPLE, V1, P29; ZEITZSCHEL B, 1969, MAR BIOL, V3, P201, DOI 10.1007/BF00360952; Zonneveld KAF, 1997, DEEP-SEA RES PT II, V44, P1411, DOI 10.1016/S0967-0645(97)00007-6; Zonneveld KAF, 2015, PALYNOLOGY, V39, P387, DOI 10.1080/01916122.2014.990115; Zonneveld KAF, 2013, REV PALAEOBOT PALYNO, V191, P1, DOI 10.1016/j.revpalbo.2012.08.003	108	3	4	0	10	PERGAMON-ELSEVIER SCIENCE LTD	OXFORD	THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND	0278-4343	1873-6955		CONT SHELF RES	Cont. Shelf Res.	FEB 15	2022	235								104648	10.1016/j.csr.2022.104648	http://dx.doi.org/10.1016/j.csr.2022.104648		FEB 2022	15	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	1A7QY					2025-03-11	WOS:000791947700001
J	Nishikawa, T; Harada, K; Watanabe, T				Nishikawa, Tetsuya; Harada, Kazuhiro; Watanabe, Tsuyoshi			Seasonal and annual dynamics of phytoplankton off Tajima, southwestern Sea of Japan	PLANKTON & BENTHOS RESEARCH			English	Article						diatom; phytoplankton structure; Sea of Japan; size-fractionated chlorophyll a; Tsushima Warm Current	COCHLODINIUM-POLYKRIKOIDES DINOPHYCEAE; JELLYFISH NEMOPILEMA-NOMURAI; MARINE PLANKTONIC DIATOM; RESTING SPORE FORMATION; SETO INLAND SEA; NORTHERN JAPAN; GROWTH; COMMUNITY; COAST; BAY	In the Sea of Japan, changes in the oceanographic conditions affect fisheries, and new phenomena such as blooms of the harmful dinoflagellate Margalefidinium polykrikoides and mass occurrences of the giant jellyfish Nemopilema nomurai have been observed since the 2000s. In order to elucidate and formulate countermeasures to such new issues, it is essential to enhance the oceanographic/biological data. However, data especially on the phytoplankton assemblage are limited. In the present study, we investigated the population dynamics of the phytoplankton community together with environmental factors at two stations off Tajima, southwestern Sea of Japan for seven fiscal years from September 2009 to March 2016. The oceanographic observations revealed the general pattern in the seasonal and annual abundance of phytoplankton off Tajima. The major component of size-fractionated chlorophyll a concentrations were micro-size (filtered pore size: >10 mu m). The results indicated that there was usually a low abundance of phytoplankton in this area. Relatively high abundances (cell densities over 100 cells mL(-1)) of micro-sized phytoplankton were observed only in spring, but total cell densities were less than 10 cells mL(-1) in most months of the other three seasons. The major phytoplankton component was diatoms. Based on the abundance and frequency, the dominant seven diatom taxa were classified into three groups: Skeletonema spp., Thalassiosira spp. and Eucampia zodiacus were dominant in spring, Chaetoceros spp. and Pseudo-nitzschia spp. were dominant in spring and autumn, and Rhizosolenia spp. and Leptocylindrus danicus were dominant in autumn.	[Nishikawa, Tetsuya; Harada, Kazuhiro] Hyogo Prefectural Technol Ctr Agr Forestry & Fish, Fisheries Technol Inst, 22-2 Minami Futami, Akashi, Hyogo 6740093, Japan; [Watanabe, Tsuyoshi] Japan Fisheries Res & Educ Agcy, Tohoku Natl Fisheries Res Inst, 3-7-25 Shinhama Cho, Shiogama, Miyagi 9850001, Japan; [Watanabe, Tsuyoshi] Japan Fisheries Res & Educ Agcy, Fisheries Resource Inst, 116 Katsurakoi, Kushiro, Hokkaido 0850802, Japan	Japan Fisheries Research & Education Agency (FRA); Japan Fisheries Research & Education Agency (FRA)	Nishikawa, T (通讯作者)，Hyogo Prefectural Technol Ctr Agr Forestry & Fish, Fisheries Technol Inst, 22-2 Minami Futami, Akashi, Hyogo 6740093, Japan.	tetsuya_nishikawa@pref.hyogo.lg.jp			Fisheries Agency of Japan	Fisheries Agency of Japan	We are grateful to the captain and crew of the R/V Tajima and members of the Tajima Fisheries Technology Institute, Hyogo Prefectural Technology Center for Agriculture, Forestry and Fisheries for their cooperation in sampling and measurement of water samples. We also thank Dr. Kazutaka Miyahara, Fisheries Technology Institute, Hyogo Prefectural Technology Center for Agriculture, Forestry and Fisheries for his support of Chl a measurement. This study was partially supported by the Fisheries Agency of Japan.		0	2	2	1	13	PLANKTON SOC JAPAN	HOKKAIDO	C/O MAR. BIODIVERSITY LAB, 3-1-1 MINATOMACHI, HAKODATE, HOKKAIDO, 041-8611, JAPAN	1880-8247	1882-627X		PLANKTON BENTHOS RES	Plankton Benthos Res.	FEB	2022	17	1					83	90		10.3800/pbr.17.83	http://dx.doi.org/10.3800/pbr.17.83			8	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	ZP2RN		gold			2025-03-11	WOS:000766272100007
J	Hegseth, EN; von Quillfeldt, C				Hegseth, Else Nost; von Quillfeldt, Cecilie			The Sub-Ice Algal Communities of the Barents Sea Pack Ice: Temporal and Spatial Distribution of Biomass and Species	JOURNAL OF MARINE SCIENCE AND ENGINEERING			English	Article						Barents Sea; ice algae; algal species; algal biomass; spatial distribution; temporal distribution; over-vintering	SOUTHEASTERN HUDSON-BAY; CENTRAL ARCTIC-OCEAN; HORIZONTAL PATCHINESS; PRIMARY PRODUCTIVITY; ECOLOGICAL PROCESSES; CALANUS-GLACIALIS; MANITOUNUK SOUND; CHLOROPHYLL-A; FRAM STRAIT; LAPTEV SEA	This work summarizes ice algal studies, presented as biomass and species temporal and spatial distribution, during 11 cruises conducted between 1986 and 2012. The majority of the biomass was found as loosely attached sub-ice algal layers, and sampling required diving. A maximum of 40 mg chlorophyll m(-2) and 15.4 x 10(9) cells m(-2) was measured in May. The species diversity was separated in zones based on ice thickness, with the highest biodiversity in the medium-thick ice of 30-80 cm. Nitzschia frigida was the most common species. There was a significant positive relationship between the dominance of this species and ice thickness, and it dominated completely in thick ice. Other common species, such as N. promare and Fossulaphycus arcticus reacted oppositely, by becoming less dominant in thick ice, but the positive correlation between total cell numbers and number of these three species indicated that they would most likely dominate in most populations. Melosira arctica was found several times below medium-thick annual ice. Algae occurred from top to bottom in the ice floes and in infiltration layers, but in very low numbers inside the ice. The bipolar dinoflagellates Polarella glacialis inhabited the ice, both as vegetative cells and cysts. The algal layers detached from the ice and sank in late spring when melting started. The cells in the sediments form an important food source for benthic animals throughout the year. Fjord populations survive the winter on the bottom and probably form next year's ice algal inoculum. A few 'over-summer' populations found in sheltered locations might provide supplementary food for ice amphipods in late summer. The future faith of the ice flora is discussed in view of a warmer climate, with increased melting of the Arctic ice cover.	[Hegseth, Else Nost] Univ Tromso, Fac Biosci Fisheries & Econ, Dept Arctic & Marine Biol, Tromso, Norway; [von Quillfeldt, Cecilie] Norwegian Polar Res Inst, N-9296 Tromso, Norway	UiT The Arctic University of Tromso; Norwegian Polar Institute	Hegseth, EN (通讯作者)，Univ Tromso, Fac Biosci Fisheries & Econ, Dept Arctic & Marine Biol, Tromso, Norway.	Else.Hegseth@uit.no; cecilie.von.quillfeldt@npolar.no			Norwegian Research Council [150356]; Norwegian Polar Institute; Statoil [3579]; University of Tromso	Norwegian Research Council(Research Council of Norway); Norwegian Polar Institute; Statoil; University of Tromso	This work was financed by the Norwegian Research Council (`Pro Mare' 1984-1988 and `On Thin Ice' 2003-2005, funding no. 150356), the Norwegian Polar Institute (ICEBAR 1995-1996 and MariClim 2006-2008), Statoil (Ice Edge Program 2006-2008, funding no. 3579), and the University of Tromso. This work is a result of data collection over a long period, sometimes as an added value of other ongoing projects, particularly cruise opportunities.	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Mar. Sci. Eng.	FEB	2022	10	2							164	10.3390/jmse10020164	http://dx.doi.org/10.3390/jmse10020164			29	Engineering, Marine; Engineering, Ocean; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Oceanography	ZX6XW		Green Published, gold			2025-03-11	WOS:000772039900001
J	Penaud, A; Eynaud, F; Etourneau, J; Bonnin, J; de Vernal, A; Zaragosi, S; Kim, JH; Kang, S; Gal, JK; Oliveira, D; Waelbroeck, C				Penaud, A.; Eynaud, F.; Etourneau, J.; Bonnin, J.; de Vernal, A.; Zaragosi, S.; Kim, J-H; Kang, S.; Gal, J-K; Oliveira, D.; Waelbroeck, C.			Ocean Productivity in the Gulf of Cadiz Over the Last 50 kyr	PALEOCEANOGRAPHY AND PALEOCLIMATOLOGY			English	Article						dinocysts; stable isotopes; alkenones; last glacial maximum; Heinrich Stadials; primary productivity; remineralization	DINOFLAGELLATE CYST DISTRIBUTION; CARBON ISOTOPIC COMPOSITION; SEA-SURFACE CONDITIONS; BENTHIC FORAMINIFERA; GLACIAL MAXIMUM; NORTHERN-HEMISPHERE; TEMPERATURE-CHANGES; EASTERN ATLANTIC; HEINRICH EVENTS; GROWTH HISTORY	Reconstructions of ocean primary productivity (PP) help to explain past and present biogeochemical cycles and climate changes in the oceans. We document PP variations over the last 50 kyr in a currently oligotrophic subtropical region, the Gulf of Cadiz. Data combine refined results from previous investigations on dinocyst assemblages, alkenones, and stable isotopes (O-18, C-13) in planktonic (Globigerina bulloides) and endobenthic (Uvigerina mediterranea) foraminifera from cores MD04-2805 CQ and MD99-2339, with new isotopic measurements on epibenthic (Cibicides pachyderma-Cibicidoides wuellerstorfi) foraminifera and dinocyst-based estimates of PP using the new n = 1,968 modern database. We constrain PP variations and export production by integrating qualitative information from bioindicators with dinocyst-based quantitative reconstructions such as PP and seasonal sea surface temperature and information about remineralization from the benthic Delta delta C-13 (difference between epibenthic and endobenthic foraminiferal delta C-13 signatures). This study also includes new information on alkenone-based SST and total organic carbon which provides insights into the relationship between past regional hydrological activity and PP regime change. We show that PP, carbon export, and remineralization were generally high in the NE subtropical Atlantic Ocean during the last glacial period and that the Last Glacial Maximum (LGM) had lower Delta delta C-13 than the Heinrich Stadials with sustained high PP, likely allowing enhanced carbon sequestration. We link these PP periods to the dynamics of upwelling, active almost year-round during sadials, but restricted to spring-summer during interstadials and LGM, like today. During interstadials, nutrient advection through freshwater inputs during autumn-winter needs also to be considered to fully understand PP regimes.	[Penaud, A.] Univ Brest, CNRS, IFREMER, Geoocean UMR 6538, Plouzane, France; [Eynaud, F.; Etourneau, J.; Bonnin, J.; Zaragosi, S.] Univ Bordeaux, CNRS, EPOC, Pessac, France; [Etourneau, J.] PSL Res Univ, EPHE, Paris, France; [de Vernal, A.] Univ Quebec Montreal UQAM, Geotop, Montreal, PQ, Canada; [Kim, J-H; Gal, J-K] KOPRI Korea Polar Res Inst, Incheon, South Korea; [Kang, S.] Hayang Univ ERICA, Gyeonggi Do, South Korea; [Oliveira, D.] Univ Algarve, CCMAR, Ctr Ciencias Mar, Campus Gambelas, Faro, Portugal; [Oliveira, D.] Inst Portugues Mar & Atmosfera IPMA, Div Geol & Georecursos Marinhos, Alges, Portugal; [Waelbroeck, C.] Sorbonne Univ, LOCEAN IPSL, CNRS, UIRD,MNHN, Paris, France	Universite de Bretagne Occidentale; Centre National de la Recherche Scientifique (CNRS); Ifremer; Universite de Bordeaux; Centre National de la Recherche Scientifique (CNRS); Universite PSL; Ecole Pratique des Hautes Etudes (EPHE); University of Quebec; University of Quebec Montreal; Korea Polar Research Institute (KOPRI); Universidade do Algarve; Instituto Portugues do Mar e da Atmosfera; Museum National d'Histoire Naturelle (MNHN); Centre National de la Recherche Scientifique (CNRS); Sorbonne Universite	Penaud, A (通讯作者)，Univ Brest, CNRS, IFREMER, Geoocean UMR 6538, Plouzane, France.	aurelie.penaud@univ-brest.fr	ZARAGOSI, Sébastien/JXL-2488-2024; Gal, Jong-Ku/JMC-5276-2023; Penaud, Aurelie/F-2485-2011; de Vernal, Anne/D-5602-2013; Oliveira, Dulce/H-9855-2018	Zaragosi, Sebastien/0000-0002-1456-8129; Penaud, Aurelie/0000-0003-3578-4549; de Vernal, Anne/0000-0001-5656-724X; Oliveira, Dulce/0000-0002-3016-532X	French CNRS; European Research Council Grant ACCLIMATE [339108]; National Research Foundation of Korea (NRF) - Ministry of Science and ICT [NRF-2021M1A5A1075512]; French Ministry for Europe and Foreign Affairs (MEAE); Ministry of Higher Education, Research and Innovation (MESRI); National Research Foundation of Korea (NRF); Korean Ministry of Science and ICT (MSIT) [MD99-2339]; Portuguese Foundation for Science and Technology (FCT) through the CCMAR FCT Research Unit [UIDB/04326/2020, CEECIND/02208/2017]; European Research Council (ERC) [339108] Funding Source: European Research Council (ERC)	French CNRS(Centre National de la Recherche Scientifique (CNRS)); European Research Council Grant ACCLIMATE(European Research Council (ERC)); National Research Foundation of Korea (NRF) - Ministry of Science and ICT(National Research Foundation of KoreaMinistry of Science, ICT & Future Planning, Republic of Korea); French Ministry for Europe and Foreign Affairs (MEAE); Ministry of Higher Education, Research and Innovation (MESRI)(Ministry of Higher Education, Research & Innovation (MESRI)); National Research Foundation of Korea (NRF)(National Research Foundation of Korea); Korean Ministry of Science and ICT (MSIT)(Ministry of Science & ICT (MSIT), Republic of Korea); Portuguese Foundation for Science and Technology (FCT) through the CCMAR FCT Research Unit; European Research Council (ERC)(European Research Council (ERC))	Thanks are due to the French polar institute (IPEV, Institut Paul Emile Victor), the captain and the crew of the Marion Dufresne, and the scientific teams of the IMAGES I and V cruises. Part of the analyses of this study was supported by the French CNRS and contributes to the 2013 INSU project "ICE-BIO-RAM: Impact des Changements Environnementaux sur la BIOdiversite marine lors des Rechauffements Abrupts du climate." CW and FE acknowledge support from the European Research Council Grant ACCLIMATE/No. 339108. This study was also partly supported by the National Research Foundation of Korea (NRF) grant funded through the Ministry of Science and ICT (NRF-2021M1A5A1075512). We acknowledge the French Ministry for Europe and Foreign Affairs (MEAE), the Ministry of Higher Education, Research and Innovation (MESRI), the National Research Foundation of Korea (NRF) as well as the Korean Ministry of Science and ICT (MSIT) through its international Hubert Curien (PHC) partnership programme STAR between France and Republic of Korea to financially support the MEDKO (Abrupt Climate events in the past Mediterranean and Korean basins) project that financially supported the alkenone-based SST record of core MD99-2339. We are also grateful to Prof. Shin for his considerable analytical support and access to lab facilities at Hanyang University, Republic of Korea. DO acknowledges funding from Portuguese Foundation for Science and Technology (FCT) through the CCMAR FCT Research Unit-project UIDB/04326/2020 and contract (CEECIND/02208/2017). Finally, we would like to thank the Bureau de traduction of the University of Brest for the improvement of English, and the two reviewers, including Andre Bahr, for their constructive and precise comments.	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Paleoclimatology	FEB	2022	37	2							e2021PA004316	10.1029/2021PA004316	http://dx.doi.org/10.1029/2021PA004316			21	Geosciences, Multidisciplinary; Oceanography; Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Geology; Oceanography; Paleontology	ZL2FZ		Green Published, Green Submitted			2025-03-11	WOS:000763496800009
J	Cavion, F; Pelin, M; Ponti, C; Della Loggia, R; Tubaro, A; Sosa, S				Cavion, Federica; Pelin, Marco; Ponti, Cristina; Della Loggia, Roberto; Tubaro, Aurelia; Sosa, Silvio			Ecotoxicological Impact of the Marine Toxin Palytoxin on the Micro-Crustacean <i>Artemia franciscana</i>	MARINE DRUGS			English	Article						Artemia; palytoxin; ecotoxicology; mortality; oxidative stress; antioxidant enzyme activity	OSTREOPSIS CF. OVATA; ANTIOXIDANT ENZYME-ACTIVITIES; GLUTATHIONE-S-TRANSFERASE; LIPID-PEROXIDATION; OXIDATIVE STRESS; GRAPHENE OXIDE; GENUS ARTEMIA; DAPHNIA-MAGNA; TOXICITY; MODEL	Palytoxin (PLTX) is a highly toxic polyether identified in various marine organisms, such as Palythoa soft corals, Ostreopsis dinoflagellates, and Trichodesmium cyanobacteria. In addition to adverse effects in humans, negative impacts on different marine organisms have been often described during Ostreopsis blooms and the concomitant presence of PLTX and its analogues. Considering the increasing frequency of Ostreopsis blooms due to global warming, PLTX was investigated for its effects on Artemia franciscana, a crustacean commonly used as a model organism for ecotoxicological studies. At concentrations comparable to those detected in culture media of O. cf. ovata (1.0-10.0 nM), PLTX significantly reduced cysts hatching and induced significant mortality of the organisms, both at larval and adult stages. Adults appeared to be the most sensitive developmental stage to PLTX: significant mortality was recorded after only 12 h of exposure to PLTX concentrations > 1.0 nM, with a 50% lethal concentration (LC50) of 2.3 nM (95% confidence interval = 1.2-4.7 nM). The toxic effects of PLTX toward A. franciscana adults seem to involve oxidative stress induction. Indeed, the toxin significantly increased ROS levels and altered the activity of the major antioxidant enzymes, in particular catalase and peroxidase, and marginally glutathione-S-transferase and superoxide dismutase. On the whole, these results indicate that environmentally relevant concentrations of PLTX could have a negative effect on Artemia franciscana population, suggesting its potential ecotoxicological impact at the marine level.	[Cavion, Federica; Pelin, Marco; Ponti, Cristina; Tubaro, Aurelia; Sosa, Silvio] Univ Trieste, Dept Life Sci, I-34127 Trieste, Italy; [Della Loggia, Roberto] Univ Trieste, Dept Chem & Pharmaceut Sci, I-34127 Trieste, Italy	University of Trieste; University of Trieste	Pelin, M (通讯作者)，Univ Trieste, Dept Life Sci, I-34127 Trieste, Italy.	federica.cavion@phd.units.it; mpelin@units.it; cponti@units.it; rdellaloggia@units.it; tubaro@units.it; ssosa@units.it		SOSA, SILVIO/0000-0002-2909-6603; PONTI, CRISTINA/0000-0002-9904-0074; Cavion, Federica/0000-0001-6901-5866; Pelin, Marco/0000-0002-4306-7411				Abatzopoulos T J., 2002, Artemia: Basic and Applied Biology; Accoroni Stefano, 2016, Advances in Oceanography and Limnology, V7, P1, DOI 10.4081/aiol.2016.5591; Ajuzie CC, 2007, J APPL PHYCOL, V19, P513, DOI 10.1007/s10811-007-9164-9; [Anonymous], 2003, Biol Ambient, DOI DOI 10.1021/AC060250J; Barata C, 2005, COMP BIOCHEM PHYS C, V140, P175, DOI 10.1016/j.cca.2005.01.013; Barata C, 2005, COMP BIOCHEM PHYS B, V140, P81, DOI 10.1016/j.cbpc.2004.09.025; Beattie KA, 2003, AQUAT TOXICOL, V62, P219, DOI 10.1016/S0166-445X(02)00091-7; Boyland E., 2006, ADV ENZYMOLOGY AND R, V173, P219; Louzao MC, 2010, TOXICON, V56, P842, DOI 10.1016/j.toxicon.2010.02.027; Casabianca S, 2019, ENVIRON POLLUT, V244, P617, DOI 10.1016/j.envpol.2018.09.110; Cavion F, 2020, ENVIRON SCI-NANO, V7, P3605, DOI 10.1039/d0en00747a; Cen JY, 2019, FISH SHELLFISH IMMUN, V95, P670, DOI 10.1016/j.fsi.2019.11.001; COOPER SD, 1984, J ANIM ECOL, V53, P51, DOI 10.2307/4341; Faimali M, 2012, MAR ENVIRON RES, V76, P97, DOI 10.1016/j.marenvres.2011.09.010; GLEIBS S, 1995, TOXICON, V33, P1531, DOI 10.1016/0041-0101(95)00079-2; Gonçalves-Soares D, 2012, MAR ENVIRON RES, V75, P54, DOI 10.1016/j.marenvres.2011.07.007; Gorbi S, 2013, FISH SHELLFISH IMMUN, V35, P941, DOI 10.1016/j.fsi.2013.07.003; Gorbi S, 2012, CHEMOSPHERE, V89, P623, DOI 10.1016/j.chemosphere.2012.05.064; Granéli E, 2011, HARMFUL ALGAE, V10, P165, DOI 10.1016/j.hal.2010.09.002; Guerrini F, 2010, TOXICON, V55, P211, DOI 10.1016/j.toxicon.2009.07.019; Guppy R, 2019, TOXICON, V167, P117, DOI 10.1016/j.toxicon.2019.06.020; Ingarao Cristina C., 2014, Harmful Algae News, V48, P2; Jemec A, 2008, COMP BIOCHEM PHYS C, V147, P61, DOI 10.1016/j.cbpc.2007.07.006; Kerbrat AS, 2011, MAR DRUGS, V9, P543, DOI 10.3390/md9040543; Larsson ME, 2018, MAR ECOL PROG SER, V596, P49, DOI 10.3354/meps12579; Libralato G, 2016, ECOL INDIC, V69, P35, DOI 10.1016/j.ecolind.2016.04.017; Livingstone D.R., 1991, Advances in Comparative and Environmental Physiology, V7, P45; LIVINGSTONE DR, 1990, FUNCT ECOL, V4, P415, DOI 10.2307/2389604; Mackie JA, 2010, LIMNOL OCEANOGR-METH, V8, P337, DOI 10.4319/lom.2010.8.337; Masó M, 2003, SCI MAR, V67, P107, DOI 10.3989/scimar.2003.67n1107; Migliore L, 1997, WATER RES, V31, P1801, DOI 10.1016/S0043-1354(96)00412-5; Mme-Sophie P, 2019, J EXP MAR BIOL ECOL, V516, P103, DOI 10.1016/j.jembe.2019.05.004; MOORE RE, 1971, SCIENCE, V172, P495, DOI 10.1126/science.172.3982.495; Neves RAF, 2018, MAR ENVIRON RES, V135, P11, DOI 10.1016/j.marenvres.2018.01.014; Neves RAF, 2017, PLOS ONE, V12, DOI 10.1371/journal.pone.0175168; Nunes B, 2006, CHEMOSPHERE, V62, P581, DOI 10.1016/j.chemosphere.2005.06.013; Nunes BS, 2006, ENVIRON POLLUT, V144, P453, DOI 10.1016/j.envpol.2005.12.037; Olsen T, 2001, ENVIRON TOXICOL CHEM, V20, P1725, DOI [10.1897/1551-5028(2001)020<1725:VIAAGS>2.0.CO;2, 10.1002/etc.5620200815]; Ott M, 2007, APOPTOSIS, V12, P913, DOI 10.1007/s10495-007-0756-2; Pagliara P, 2012, TOXICON, V60, P1203, DOI 10.1016/j.toxicon.2012.08.005; Papadopoulos AI, 2004, MAR BIOL, V144, P295, DOI 10.1007/s00227-003-1203-8; Pelin M, 2011, TOXICOLOGY, V282, P30, DOI 10.1016/j.tox.2011.01.010; Pelin M, 2014, TOXICOL LETT, V229, P440, DOI 10.1016/j.toxlet.2014.07.022; Pelin M, 2013, TOXICOL APPL PHARM, V266, P1, DOI 10.1016/j.taap.2012.10.023; Persoone G., 1987, Artemia Res. 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Drugs	FEB	2022	20	2							81	10.3390/md20020081	http://dx.doi.org/10.3390/md20020081			14	Chemistry, Medicinal; Pharmacology & Pharmacy	Science Citation Index Expanded (SCI-EXPANDED)	Pharmacology & Pharmacy	ZM8MY	35200611	Green Published, gold			2025-03-11	WOS:000764605400001
J	Wei, ZC; Ding, W; Li, ML; Shi, JX; Wang, HZ; Wang, YR; Li, YB; Xu, YQ; Hu, JJ; Bao, ZM; Hu, XL				Wei, Zhongcheng; Ding, Wei; Li, Moli; Shi, Jiaoxia; Wang, Huizhen; Wang, Yangrui; Li, Yubo; Xu, Yiqiang; Hu, Jingjie; Bao, Zhenmin; Hu, Xiaoli			The Caspase Homologues in Scallop <i>Chlamys farreri</i> and Their Expression Responses to Toxic Dinoflagellates Exposure	TOXINS			English	Article						caspase; development; paralytic shellfish toxin; Zhikong scallop; Chlamys farreri	ALEXANDRIUM-CATENELLA; INFLAMMATORY CASPASES; PHYLOGENETIC ANALYSIS; APOPTOSIS; OYSTER; GENE; DIFFERENTIATION; METAMORPHOSIS; HEMOCYTES; CLONING	The cysteine aspartic acid-specific protease (caspase) family is distributed across vertebrates and invertebrates, and its members are involved in apoptosis and response to cellular stress. The Zhikong scallop (Chlamys farreri) is a bivalve mollusc that is well adapted to complex marine environments, yet the diversity of caspase homologues and their expression patterns in the Zhikong scallop remain largely unknown. Here, we identified 30 caspase homologues in the genome of the Zhikong scallop and analysed their expression dynamics during all developmental stages and following exposure to paralytic shellfish toxins (PSTs). The 30 caspase homologues were classified as initiators (caspases-2/9 and caspases-8/10) or executioners (caspases-3/6/7 and caspases-3/6/7-like) and displayed increased copy numbers compared to those in vertebrates. Almost all of the caspase-2/9 genes were highly expressed throughout all developmental stages from zygote to juvenile, and their expression in the digestive gland and kidney was slightly influenced by PSTs. The caspase-8/10 genes were highly expressed in the digestive gland and kidney, while PSTs inhibited their expression in these two organs. After exposure to different Alexandrium PST-producing algae (AM-1 and ACDH), the number of significantly up-regulated caspase homologues in the digestive gland increased with the toxicity level of PST derivatives, which might be due to the higher toxicity of GTXs produced by AM-1 compared to the N-sulphocarbamoyl analogues produced by ACDH. However, the effect of these two PST-producing algae strains on caspase expression in the kidney seemed to be stronger, possibly because the PST derivatives were transformed into highly toxic compounds in scallop kidney, and suggested an organ-dependent response to PSTs. These results indicate the dedicated control of caspase gene expression and highlight their contribution to PSTs in C. farreri. This work provides a further understanding of the role of caspase homologues in the Zhikong scallop and can guide future studies focussing on the role of caspases and their interactions with PSTs.	[Wei, Zhongcheng; Ding, Wei; Li, Moli; Shi, Jiaoxia; Wang, Huizhen; Wang, Yangrui; Li, Yubo; Xu, Yiqiang; Hu, Jingjie; Bao, Zhenmin; Hu, Xiaoli] Ocean Univ China, Coll Marine Life Sci, MOE Key Lab Marine Genet & Breeding, Qingdao 266003, Peoples R China; [Wang, Huizhen; Bao, Zhenmin; Hu, Xiaoli] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266237, Peoples R China; [Hu, Jingjie; Bao, Zhenmin] Ocean Univ China, Sanya Oceanog Inst, Lab Trop Marine Germplasm Resources & Breeding En, Sanya 572000, Peoples R China	Ocean University of China; Laoshan Laboratory; Ocean University of China	Wang, HZ; Hu, XL (通讯作者)，Ocean Univ China, Coll Marine Life Sci, MOE Key Lab Marine Genet & Breeding, Qingdao 266003, Peoples R China.; Wang, HZ; Hu, XL (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266237, Peoples R China.	weizhongcheng@stu.ouc.edu.cn; dingwei@ouc.edu.cn; ml940520@163.com; shijiaoxia@ouc.edu.cn; wanghuizhen@ouc.edu.cn; yangrui1121@126.com; liyubo@stu.ouc.edu.cn; 21200631119@stu.ouc.edu.cn; hujingjie@ouc.edu.cn; zmbao@ouc.edu.cn; hxl707@ouc.edu.cn	zhang, jinsheng/GXF-8167-2022; Chen, Zhaoying/IAN-5249-2023; DING, Wei/CVK-8505-2022	Wei, Zhongcheng/0000-0002-5300-1141; DING, Wei/0000-0002-1847-244X	National Key RD Project [2018YFD0900604, 2019YFC1605704]; Sanya Yazhou Bay Science and Technology City [SKJC-KJ-2019KY01]	National Key RD Project; Sanya Yazhou Bay Science and Technology City	Funding:This research was funded by the National Key R&D Project (2018YFD0900604 and 2019YFC1605704) and Sanya Yazhou Bay Science and Technology City (SKJC-KJ-2019KY01).	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J	Fuchsman, CA; Cherubini, L; Hays, MD				Fuchsman, Clara A.; Cherubini, Luca; Hays, Matthew D.			An analysis of protists in Pacific oxygen deficient zones: implications for Prochlorococcus and N-2-producing bacteria	ENVIRONMENTAL MICROBIOLOGY			English	Article							EASTERN TROPICAL PACIFIC; PLANKTONIC NAKED AMEBAS; MINIMUM ZONE; AEROBIC RESPIRATION; EPIBIOTIC BACTERIA; DIVERSITY; SEA; GROWTH; COMMUNITIES; FJORD	Ocean oxygen deficient zones (ODZs) host 30%-50% of marine N-2 production. Cyanobacteria photosynthesizing in the ODZ create a secondary chlorophyll maximum and provide organic matter to N-2-producing bacteria. This chlorophyll maximum is thought to occur due to reduced grazing in anoxic waters. We first examine ODZ protists with long amplicon reads. We then use non-primer-based methods to examine the composition and relative abundance of protists in metagenomes from the Eastern Tropical North and South Pacific ODZs and compare these data to the oxic Hawaii Ocean Time-series (HOT) in the North Pacific. We identify and quantify protists in proportion to the total microbial community. From metagenomic data, we see a large drop in abundance of fungi and protists such as choanoflagellates, radiolarians, cercozoa and ciliates in the ODZs but not in the oxic mesopelagic at HOT. Diplonemid euglenozoa were the only protists that increased in the ODZ. Dinoflagellates and foraminifera reads were also present in the ODZ though less abundant compared to oxic waters. Denitrification has been found in foraminifera but not yet in dinoflagellates. DNA techniques cannot separate dinoflagellate cells and cysts. Metagenomic analysis found taxonomic groups missed by amplicon sequencing and identified trends in abundance.	[Fuchsman, Clara A.; Hays, Matthew D.] Univ Maryland, Ctr Environm Sci, Horn Point Lab, Cambridge, MD 21613 USA; [Cherubini, Luca] Maryland Sea Grant Coll, College Pk, MD 20740 USA	University System of Maryland; University of Maryland Center for Environmental Science	Fuchsman, CA (通讯作者)，Univ Maryland, Ctr Environm Sci, Horn Point Lab, Cambridge, MD 21613 USA.	cfuchsman@umces.edu	Fuchsman, Clara/AAM-3641-2021	Fuchsman, Clara/0000-0002-9151-4984	Maryland Sea Grant REU program - National Science Foundation [OCE-1756244];  [OCE-1046017]	Maryland Sea Grant REU program - National Science Foundation; 	We would like to thank the captain and the crew of the RV Thompson and RV Palmer as well as chief scientist A.H. Devol. These cruises on which these samples were obtained were funded by OCE-1046017 to A. H. Devol. L. Cherubini was funded by the Maryland Sea Grant REU program which in turn was funded by National Science Foundation grant OCE-1756244. This work was funded by Horn Point Laboratory.	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Microbiol.	APR	2022	24	4					1790	1804		10.1111/1462-2920.15893	http://dx.doi.org/10.1111/1462-2920.15893		JAN 2022	15	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	0U9TT	34995411				2025-03-11	WOS:000743325500001
J	Lim, YK; Hong, S; Baek, SH				Lim, Young Kyun; Hong, Seongjin; Baek, Seung Ho			Potential influence of the proliferation of sediment-based diatoms on blooms of a harmful dinoflagellate <i>Cochlodinium polykrikoides</i>: a microcosm approach	JOURNAL OF APPLIED PHYCOLOGY			English	Article						Typhoon; Sediment resuspension; Diatoms competition; Bloom control; Cochlodinium polykrikoides	SAGAMI BAY; MARINE BACTERIOPLANKTON; MICROBIAL COMMUNITY; GROWTH-INHIBITION; COASTAL WATERS; RED TIDES; PHYTOPLANKTON; DIVERSITY; SEA; SUCCESSION	Typhoons cause significant environmental damage in coastal areas and one of their effects is the suspension of the resting stage cells of diatoms from the surface sediment. We performed microcosm experiments in 10-L containers using natural sediments from three different sites of southern Korean coastal waters (Geoje, Goheung, and Tongyeong) to simulate the effect of suspension of sediment-based diatoms by a typhoon on blooms of the harmful dinoflagellate Cochlodinium polykrikoides. This dinoflagellate grew well under control conditions and exhibited a maximum abundance of 985 cells mL(-1) on day 10, but all treatment groups (Geoje, Goheung, and Tongyeong) had decreased abundances by day 4 and fewer than 50 cells mL(-1) on day 10. As C. polykrikoides declined, two diatoms (Skeletonema spp. and Chaetoceros spp.) dominated in the three treatment groups. In particular, these diatoms increased to 2.9 x 10(4) cells mL(-1) on day 5 and 2.3 x 10(4) cells mL(-1) on day 7 in the Geoje group. A multivariate redundancy analysis indicated a negative correlation between the abundances of C. polykrikoides and Chaetoceros spp., and this corresponded to the sharpest decrease of C. polykrikoides in the Geoje group. There were also changes in the bacterial community associated with changes in phytoplankton. During the early phase, when C. polykrikoides was dominant, Rhodobacterales prevailed (> 50%) in all treatment groups, and the proportion of these bacteria in the Geoje group decreased earlier than in the other groups. At the end of the experiment, there was a high proportion of Verrucomicrobiales, suggesting that sediment addition led to changes in the bacterial community. Overall, our microcosm experiments suggest that the significant environmental changes following the passage of a typhoon, especially the suspension and proliferation of sediment-based diatoms, directly affects the bacterial community and decreases blooms of C. polykrikoides.	[Lim, Young Kyun; Baek, Seung Ho] KIOST Korea Inst Ocean Sci & Technol, Risk Assessment Res Ctr, Geoje 53201, South Korea; [Lim, Young Kyun; Baek, Seung Ho] Univ Sci & Technol, Dept Ocean Sci, Daejeon 34113, South Korea; [Hong, Seongjin] Chungnam Natl Univ, Dept Ocean Environm Sci, Daejeon 34134, South Korea	Korea Institute of Ocean Science & Technology (KIOST); University of Science & Technology (UST); Chungnam National University	Baek, SH (通讯作者)，KIOST Korea Inst Ocean Sci & Technol, Risk Assessment Res Ctr, Geoje 53201, South Korea.; Baek, SH (通讯作者)，Univ Sci & Technol, Dept Ocean Sci, Daejeon 34113, South Korea.	baeksh@kiost.ac.kr	Hong, Seongjin/AAO-8503-2020; Hong, Seongjin/B-5933-2013	BAEK, SEUNG HO/0000-0002-5402-2518; Hong, Seongjin/0000-0002-6305-8731	Korea Institute of Ocean Science and Technology (KIOST) [PE99912]; Ministry of Food and Drug Safety [20163MFDS641]	Korea Institute of Ocean Science and Technology (KIOST); Ministry of Food and Drug Safety(Ministry of Food & Drug Safety (MFDS), Republic of Korea)	This research was supported by the Korea Institute of Ocean Science and Technology (KIOST; PE99912) and by a grant (20163MFDS641) from Ministry of Food and Drug Safety.	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Appl. Phycol.	APR	2022	34	2					953	964		10.1007/s10811-021-02674-y	http://dx.doi.org/10.1007/s10811-021-02674-y		JAN 2022	12	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	ZY4KI					2025-03-11	WOS:000742604700002
J	Kihika, JK; Wood, SA; Rhodes, L; Smith, KF; Thompson, L; Challenger, S; Ryan, KG				Kihika, Joseph Kanyi; Wood, Susanna A.; Rhodes, Lesley; Smith, Kirsty F.; Thompson, Lucy; Challenger, Sarah; Ryan, Ken G.			Cryoprotectant treatment tests on three morphologically diverse marine dinoflagellates and the cryopreservation of <i>Breviolum</i> sp. (Symbiodiniaceae)	SCIENTIFIC REPORTS			English	Article							HARMFUL ALGAL BLOOMS; ALEXANDRIUM-FUNDYENSE; NEW-ZEALAND; MICROALGAE; DINOPHYCEAE; CYSTS; PINNATOXINS; TOXICITY; STORAGE; DIATOM	Dinoflagellates are among the most diverse group of microalgae. Many dinoflagellate species have been isolated and cultured, and these are used for scientific, industrial, pharmaceutical, and agricultural applications. Maintaining cultures is time-consuming, expensive, and there is a risk of contamination or genetic drift. Cryopreservation offers an efficient means for their long-term preservation. Cryopreservation of larger dinoflagellate species is challenging and to date there has been only limited success. In this study, we explored the effect of cryoprotectant agents (CPAs) and freezing methods on three species: Vulcanodinium rugosum, Alexandrium pacificum and Breviolum sp. A total of 12 CPAs were assessed at concentrations between 5 and 15%, as well as in combination with dimethyl sulfoxide (DMSO) and other non-penetrating CPAs. Two freezing techniques were employed: rapid freezing and controlled-rate freezing. Breviolum sp. was successfully cryopreserved using 15% DMSO. Despite exploring different CPAs and optimizing the freezing techniques, we were unable to successfully cryopreserve V. rugosum and A. pacificum. For Breviolum sp. there was higher cell viability (45.4 +/- 2.2%) when using the controlled-rate freezing compared to the rapid freezing technique (10.0 +/- 2.8%). This optimized cryopreservation protocol will be of benefit for the cryopreservation of other species from the family Symbiodiniaceae.	[Kihika, Joseph Kanyi; Wood, Susanna A.; Rhodes, Lesley; Smith, Kirsty F.; Thompson, Lucy; Challenger, Sarah] Cawthron Inst, Private Bag 2, Nelson 7042, New Zealand; [Kihika, Joseph Kanyi; Ryan, Ken G.] Victoria Univ Wellington, Sch Biol Sci, POB 600, Wellington 6140, New Zealand; [Smith, Kirsty F.] Univ Auckland, Sch Biol Sci, Private Bag 92019, Auckland 1142, New Zealand	Cawthron Institute; Victoria University Wellington; University of Auckland	Kihika, JK (通讯作者)，Cawthron Inst, Private Bag 2, Nelson 7042, New Zealand.; Kihika, JK (通讯作者)，Victoria Univ Wellington, Sch Biol Sci, POB 600, Wellington 6140, New Zealand.	joseph.kihika@vuw.ac.nz	Kihika, Joseph/LZF-7151-2025	kihika, Joseph/0000-0002-4855-8826; Kihika, Joseph Kanyi/0000-0001-6805-5890; Wood, Susanna/0000-0003-1976-8266	New Zealand Ministry of Business, Innovation and Employment [CAWX0902]; Cawthron Institute Internal Capability Investment Fund scholarship; New Zealand Ministry of Business, Innovation & Employment (MBIE) [CAWX0902] Funding Source: New Zealand Ministry of Business, Innovation & Employment (MBIE)	New Zealand Ministry of Business, Innovation and Employment(New Zealand Ministry of Business, Innovation and Employment (MBIE)); Cawthron Institute Internal Capability Investment Fund scholarship; New Zealand Ministry of Business, Innovation & Employment (MBIE)(New Zealand Ministry of Business, Innovation and Employment (MBIE))	This research was supported by funding from the New Zealand Ministry of Business, Innovation and Employment, Contract number: CAWX0902 and a Cawthron Institute Internal Capability Investment Fund scholarship.	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J	Dhifallah, F; Rochon, A; Simard, N; McKindsey, CW; Gosselin, M; Howland, KL				Dhifallah, F.; Rochon, A.; Simard, N.; McKindsey, C. W.; Gosselin, M.; Howland, K. L.			Dinoflagellate communities in high-risk Canadian Arctic ports	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Dinoflagellates; Canadian arctic; Ballast water; Non-indigenous species; Toxic species	BALLAST WATER EXCHANGE; HARMFUL ALGAL BLOOMS; DINOPHYSIS-ACUMINATA; CERATIUM-FURCA; SEA-ICE; CYST ASSEMBLAGES; SPATIAL-PATTERNS; CLIMATE-CHANGE; HUDSON-BAY; SAGAMI BAY	The expected increase of shipping activities in the Canadian Arctic is predicted to enhance potential introductions of non-indigenous species (NIS), including dinoflagellate taxa, which may have important ecological and economic impacts once released in a new environment. The lack of information about native species represents an obstacle in detecting the arrival of NIS. In this context, the present study characterizes dinoflagellate communities in high-risk Canadian Arctic ports to provide baseline data and to verify the presence of potential NIS and harmful taxa. In total, we identified 49 dinoflagellate taxa from 9 families in the ports of Churchill, Deception Bay, Iqaluit and Milne Inlet, including 7 taxa known to be potential toxin producers. Dinoflagellate communities differed significantly between ports and among time periods in the heavily used ports, those of Churchill (between 2007 and 2015) and Iqaluit (between 2015 and 2019). Comparisons between dinoflagellate communities in the ports and those in ballast water showed that 12 taxa found in ballast water of vessels discharging in Churchill and Deception Bay are potential NIS, confirming the introduction of new species by shipping activities. This may be exacerbated in the near future as a result of extended/prolonged ice-free conditions due to global warming.	[Dhifallah, F.; Rochon, A.; Gosselin, M.] Univ Quebec Rimouski, Inst Sci Mer Rimouski, Rimouski, PQ, Canada; [Simard, N.; McKindsey, C. W.] Inst Maurice Lamontagne Peches & Oceans Canada, Mont Joli, PQ, Canada; [Howland, K. L.] Fisheries & Ocean Canada, Freshwater Inst, Arctic & Aquat Div, Winnipeg, MB, Canada	University of Quebec; Universite du Quebec a Rimouski; Fisheries & Oceans Canada; Fisheries & Oceans Canada	Dhifallah, F (通讯作者)，Univ Quebec Rimouski, Inst Sci Mer Rimouski, Rimouski, PQ, Canada.	Fatma_dhifallah@uqar.ca	McKindsey, Chris/AAH-6773-2020; Gosselin, Michel/B-4477-2014	Gosselin, Michel/0000-0002-1044-0793; Dhifallah, Fatma/0000-0002-2835-2070	Polar Knowledge Canada; Nunavik Marine Region Wildlife Board; Nunavut Wildlife Management Board; Fisheries and Oceans Canada (DFO) (AIS Monitoring Ocean Protection Plan, Strategic Program for Ecosystem-based Research and Advice, and Arctic Science Program Funds); Natural Resources Canada	Polar Knowledge Canada; Nunavik Marine Region Wildlife Board; Nunavut Wildlife Management Board; Fisheries and Oceans Canada (DFO) (AIS Monitoring Ocean Protection Plan, Strategic Program for Ecosystem-based Research and Advice, and Arctic Science Program Funds); Natural Resources Canada(Natural Resources CanadaCanadian Forest Service)	This work was supported by Polar Knowledge Canada, Nunavik Marine Region Wildlife Board, Nunavut Wildlife Management Board, Fisheries and Oceans Canada (DFO) (AIS Monitoring Ocean Protection Plan, Strategic Program for Ecosystem-based Research and Advice, and Arctic Science Program Funds) and Natural Resources Canada (Polar Continental and Shelf Program logistic support) to K. Howland, and DFO Ocean Protection Plan and Ocean and Freshwater Science Contribution Program, Natural Sciences and Engineering Research Council of Canada and Fonds de recherche du Quebec -Nature et technologies through Quebec-Ocean to M. Gosselin and A. Rochon. We wish to thank Baffinland and Raglan mines staff and FedNav ship crews for their logistics support. We are grateful to local community members, DFO and university collaborators who participated in sampling; Heather Clark, Colin Gallagher, and Christie Morrison who helped with fieldwork preparation and data/sample management; and O. Lacasse and S. Lessard for their help in the identification of dinoflagellates and ballast water samples; and A. Caron for his advice in statistics. We thank M.N Bourassa and P. Guillot for processing CTD data. This paper benefited from constructive comments from G. Winkler, C. Lovejoy, and the anonymous referees. This is a contribution to the research programs of the Institut des sciences de la mer de Rimouski, Quebec-Ocean, and DFO Arctic Science.	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Coast. Shelf Sci.	MAR 5	2022	266								107731	10.1016/j.ecss.2021.107731	http://dx.doi.org/10.1016/j.ecss.2021.107731		JAN 2022	16	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	0V1ZL					2025-03-11	WOS:000788143400004
J	Shin, J; Kim, SM				Shin, Jisun; Kim, Soo Mee			Temporal Prediction of Paralytic Shellfish Toxins in the Mussel <i>Mytilus galloprovincialis</i> Using a LSTM Neural Network Model from Environmental Data	TOXINS			English	Article						paralytic shellfish toxins; Mytilus galloprovincialis; LSTM neural network model	DINOFLAGELLATE ALEXANDRIUM-TAMARENSE; HARMFUL ALGAL BLOOMS; HYBRID ARIMA; CHINHAE BAY; CYST	Paralytic shellfish toxins (PSTs) are produced mainly by Alexandrium catenella (formerly A. tamarense). Since 2000, the National Institute of Fisheries Science (NIFS) has been providing information on PST outbreaks in Korean coastal waters at one- or two-week intervals. However, a daily forecast is essential for immediate responses to PST outbreaks. This study aimed to predict the outbreak timing of PSTs in the mussel Mytilus galloprovincialis in Jinhae Bay and along the Geoje coast in the southern coast of the Korea Peninsula. We used a long-short-term memory (LSTM) neural network model for temporal prediction of PST outbreaks from environmental data, such as water temperature (WT), tidal height, and salinity, measured at the Geojedo, Gadeokdo, and Masan tidal stations from 2006 to 2020. We found that PST outbreaks is gradually accelerated during the three years from 2018 to 2020. Because the in-situ environmental measurements had many missing data throughout the time span, we applied LSTM for gap-filling of the environmental measurements. We trained and tested the LSTM models with different combinations of environmental factors and the ground truth timing data of PST outbreaks for 5479 days as input and output. The LSTM model trained from only WT had the highest accuracy (0.9) and lowest false-alarm rate. The LSTM-based temporal prediction model may be useful as a monitoring system of PSP outbreaks in the coastal waters of southern Korean.	[Shin, Jisun] Pusan Natl Univ, BK21 Sch Earth & Environm Syst, Busan 46241, South Korea; [Kim, Soo Mee] Korea Inst Ocean Sci & Technol KIOST, Maritime ICT R&D Ctr, Busan 49111, South Korea; [Kim, Soo Mee] Korea Maritime & Ocean Univ, Dept Convergence Study Ocean Sci & Technol, Busan 49111, South Korea	Pusan National University; Korea Institute of Ocean Science & Technology (KIOST); Korea Maritime & Ocean University	Kim, SM (通讯作者)，Korea Inst Ocean Sci & Technol KIOST, Maritime ICT R&D Ctr, Busan 49111, South Korea.; Kim, SM (通讯作者)，Korea Maritime & Ocean Univ, Dept Convergence Study Ocean Sci & Technol, Busan 49111, South Korea.	sjs1008@pusan.ac.kr; smeekim@kiost.ac.kr	Shin, Jisun/AAA-6182-2022	Kim, Soo Mee/0000-0001-8414-1297; Shin, Jisun/0000-0002-0700-1175	National Research Foundation of Korea (NRF) - Korea government (MSIT) [NRF-2021R1A2C2006682]; Ministry of Oceans and Fisheries, Korea	National Research Foundation of Korea (NRF) - Korea government (MSIT)(National Research Foundation of KoreaMinistry of Science, ICT & Future Planning, Republic of KoreaMinistry of Science & ICT (MSIT), Republic of Korea); Ministry of Oceans and Fisheries, Korea	This research was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT), grant number NRF-2021R1A2C2006682 and by the project titled "Development of Smart Processing Technology for Sea Foods", funded by the Ministry of Oceans and Fisheries, Korea.	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J	Shang, LX; Zhai, XY; Tian, W; Liu, YY; Han, YC; Deng, YY; Hu, ZX; Tang, YZ				Shang, Lixia; Zhai, Xinyu; Tian, Wen; Liu, Yuyang; Han, Yangchun; Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong			<i>Pseudocochlodinium profundisulcus</i> Resting Cysts Detected in the Ballast Tank Sediment of Ships Arriving in the Ports of China and North America and the Implications in the Species' Geographic Distribution and Possible Invasion	INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH			English	Article						biological invasion; dinoflagellate; harmful algal blooms (HABs); Pseudocochlodinium profundisulcus; resting cyst; ships' ballast tank sediment	HARMFUL ALGAL BLOOMS; COCHLODINIUM-GEMINATUM BLOOM; MULTIPLE SEQUENCE ALIGNMENT; PEARL RIVER ESTUARY; DINOFLAGELLATE CYSTS; GYMNODINIUM-CATENATUM; GENETIC-VARIATION; TERM SURVIVAL; EAST-COAST; WATER	Over the past several decades, much attention has been focused on the dispersal of aquatic nonindigenous species via ballast tanks of shipping vessels worldwide. The recently reclassified dinoflagellate Pseudocochlodinium profundisulcus (previously identified as Cochlodinium sp., Cochlodinium geminatum, or Polykrikos geminatus) was not reported in China until 2006. However, algal blooming events caused by this organism have been reported almost every year since then in the Pearl River Estuary and its adjacent areas in China. Whether P. profundisulcus is an indigenous or an invasive species has thus become an ecological question of great scientific and practical significance. In this study, we collected the sediments from ballast tanks of ships arriving in the ports of China and North America and characterized dinoflagellate resting cysts via a combined approach. We germinated two dark brownish cysts from the tank of an international ship (Vessel A) arriving at the Jiangyin Port (China) into vegetative cells and identified them as P. profundisulcus by light and scanning electron microscopy and phylogenetic analyses for partial LSU rDNA sequences. We also identified P. profundisulcus cyst from the ballast tank sediment of a ship (Vessel B) arriving in the port of North America via single-cyst PCR and cloning sequencing, which indicated that this species could be transported as resting cyst via ship. Since phylogenetic analyses based on partial LSU rDNA sequences could not differentiate all sequences among our cysts from those deposited in the NCBI database into sub-groups, all populations from China, Australia, Japan, and the original sources from which the cysts in the two vessels arrived in China and North America were carried over appeared to share a very recent common ancestor, and the species may have experienced a worldwide expansion recently. These results indicate that P. profundisulcus cysts may have been extensively transferred to many regions of the world via ships' ballast tank sediments. While our work provides an exemplary case for both the feasibility and complexity (in tracking the source) of the bio-invasion risk via the transport of live resting cysts by ship's ballast tanks, it also points out an orientation for future investigation.	[Shang, Lixia; Zhai, Xinyu; Liu, Yuyang; Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Shang, Lixia; Liu, Yuyang; Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Shang, Lixia; Liu, Yuyang; Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Tian, Wen; Han, Yangchun] Comprehens Tech Serv Ctr Jiangyin Customs, State Key Lab Ballast Water Res, Wuxi 214440, Jiangsu, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences	Hu, ZX; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Hu, ZX; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Hu, ZX; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	lxshang@qdio.ac.cn; zhaixinyu16@mails.ucas.edu.cn; tianwen@jytc.org.cn; liuyuyang@qdio.ac.cn; hanyangchun@jytc.org.cn; yunyandeng@qdio.ac.cn; zhu@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	Zhang, Xing/ACQ-5035-2022; ZHANG, hui jie/HTN-1690-2023; Li, Yang/KFB-5350-2024	Liu, Yuyang/0000-0003-0418-4989; Deng, Yunyan/0000-0001-5967-3611; Tang, Ying-Zhong/0000-0003-0446-3128; Hu, Zhangxi/0000-0002-4742-4973	National Natural Science Foundation of China [41976134]; Science and Technology Basic Resources Investigation Program of China [2018FY100200]; Research Projects of General Administration of Customs [2021HK157]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Science and Technology Basic Resources Investigation Program of China; Research Projects of General Administration of Customs	This research was funded by the National Natural Science Foundation of China (grant number 41976134), the Science and Technology Basic Resources Investigation Program of China (grant number 2018FY100200), and Research Projects of General Administration of Customs (grant number 2021HK157).	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Mar. Sin, V51, P132, DOI [10.12036/hykxjk20160730001, DOI 10.12036/HYKXJK20160730001]; Wang H, 2021, SCI TOTAL ENVIRON, V759, DOI 10.1016/j.scitotenv.2020.143465; Wu Ni Wu Ni, 2013, Journal of Fisheries of China, V37, P1328; Yan JY, 2019, J APPL PHYCOL, V31, P2957, DOI 10.1007/s10811-019-01784-y	74	3	3	5	30	MDPI	BASEL	ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND		1660-4601		INT J ENV RES PUB HE	Int. J. Environ. Res. Public Health	JAN	2022	19	1							299	10.3390/ijerph19010299	http://dx.doi.org/10.3390/ijerph19010299			11	Environmental Sciences; Public, Environmental & Occupational Health	Science Citation Index Expanded (SCI-EXPANDED); Social Science Citation Index (SSCI)	Environmental Sciences & Ecology; Public, Environmental & Occupational Health	YS8AV	35010560	Green Published, gold			2025-03-11	WOS:000750895600001
J	Bielsa, GB; Berasategui, AA; Dutto, MS; Uibrig, R; Hoffmeyer, MS				Bielsa, G. Barnech; Berasategui, A. A.; Dutto, M. S.; Uibrig, R.; Hoffmeyer, M. S.			The effect of untreated sewage discharge in food availability, egg production, and female survival of the copepod <i>Acartia tonsa</i> in a southwestern Atlantic estuary	REGIONAL STUDIES IN MARINE SCIENCE			English	Article						Natural food; Sewage pollution; Copepods; Acartia tonsa plasticity; Bahia Blanca Estuary	BAHIA-BLANCA ESTUARY; REPRODUCTIVE TOXICITY; DINOFLAGELLATE CYSTS; TEMPORAL VARIATIONS; EUTROPHIC ESTUARY; VITAL-RATES; DIET; QUALITY; MESOZOOPLANKTON; MICROPLANKTON	Estuarine copepods are considered ecological relevant components in the marine trophic webs and have high phenotypic plasticity and adaptability to face the environmental variations coastal marine ecosystems typically show. This work aims to assess the Acartia tonsa food availability, egg production, and female survival in an urban-industrial sewage discharge site (Canal Vieja, CV) and a non-disturbed site by sewage (Bahia del Medio, BM) from the Bahia Blanca Estuary, Argentina. Acartia tonsa females and microplankton samples, used as natural food, were taken during the austral warm season 2008-2009. The experimental incubations of the females were performed in a laboratory simulating the in situ environmental conditions. The microplankton showed different composition and abundance values between both studied sites. The survival of females showed significant differences between the sites, but the egg production did not show clear differences between them. A positive correlation was found among egg production, diatom, and tintinnid-ciliate abundances. A low female survival (16.5%) was observed when high ammonium concentrations (35.15 mu M) were recorded at CV. The concentration of nitrogenous nutrients, especially ammonium, along with pH and turbidity, were the drivers explaining the variation in the reproductive performance and survival of A. tonsa. Our findings further understand the reproductive performance, plasticity, and survival of key planktonic organisms in polluted coastal areas. (C) 2021 Published by Elsevier B.V.	[Bielsa, G. Barnech] Univ Nacl Comahue, Fac Ciencias & Tecnol Alimentos, Villa Regina, Argentina; [Berasategui, A. A.; Dutto, M. S.; Uibrig, R.; Hoffmeyer, M. S.] Inst Argentino Oceanog IADO CONICET UNS, Camino La Carrindanga Km 7-5, Bahia Blanca, Buenos Aires, Argentina	Universidad Nacional del Comahue	Berasategui, AA (通讯作者)，Inst Argentino Oceanog IADO CONICET UNS, Camino La Carrindanga Km 7-5, Bahia Blanca, Buenos Aires, Argentina.	aberasa@criba.edu.ar			 [FONCYT-PICT1713];  [FONCYT-PICT1795]	; 	We thank the technical and professional staff from the Instituto Argentino de Oceanografia (IADO-CONICET-UNS) for their support during the sampling period and the use of the Mastersizer Particle Analyzer. We would also thank M. Sonia Barria de Cao for her assistance in the taxonomic characterization of microplankton. This study was supported by the FONCYT-PICT1713, Argentina, FONCYT-PICT1795, Argentina.	Aguilera VM, 2013, ESTUAR COAST, V36, P1084, DOI 10.1007/s12237-013-9615-2; Baldini M. D., 1999, Revista Argentina de Microbiologia, V31, P19; Barría de Cao María Sonia, 2003, Iheringia, Sér. 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Stud. Mar. Sci.	JAN	2022	49								102139	10.1016/j.rsma.2021.102139	http://dx.doi.org/10.1016/j.rsma.2021.102139		DEC 2021	8	Ecology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	YO0FP					2025-03-11	WOS:000747624700007
J	Castaneda-Quezada, R; Garcia-Mendoza, E; Ramirez-Mendoza, R; Helenes, J; Rivas, D; Romo-Curiel, AE; Lago-Leston, A				Castaneda-Quezada, Rigel; Garcia-Mendoza, Ernesto; Ramirez-Mendoza, Rafael; Helenes, Javier; Rivas, David; Romo-Curiel, Alfonsina E.; Lago-Leston, Asuncion			Distribution of Gymnodinium catenatum Graham cysts and its relation to harmful algae blooms in the northern Gulf of California	JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM			English	Article						Circulation patterns; cyst relocation; Gymnodinium catenatum; HAB; PSP; seedbeds	DINOFLAGELLATE RESTING CYSTS; ALEXANDRIUM-FUNDYENSE CYSTS; RECENT MARINE-SEDIMENTS; BAHIA-CONCEPCION; COLORADO RIVER; SPATIAL-DISTRIBUTION; SURFACE SEDIMENTS; MICRORETICULATE CYST; SEASONAL OCCURRENCE; LIFE-CYCLE	Germination of cysts serves as inoculum for the proliferation of some dinoflagellates, and cyst abundance in sediments represents crucial information to understand and possibly predict Harmful Algae Blooms (HABs). Cyst distribution is related to the physical characteristics of the sediments and the hydrodynamics (circulation) of a particular region. In the northern Gulf of California (nGC) several Gymnodinium catenatum HABs have been recorded. However, the presence of resting cysts and the effect of hydrodynamics on their distribution in the nGC have not been investigated. This study evaluated cyst abundance, distribution and their relation to local circulation in surface sediments during two periods that coincided with a non-bloom year condition (July 2016) and after a major HAB registered in the nGC that occurred in January 2017. Also, a numerical ocean model was implemented to characterize the transport and relocation of cysts and sediments in the region. Gymnodinium catenatum cysts were heterogeneously distributed with some areas of high accumulation (as high as 158 cyst g(-1), and 27% of total cyst registered). Cysts seemed to be transported in an eastward direction after deposition and accumulated in an extensive area that probably is the seedbed responsible for the initiation of HABs in the region. The nGC is a retention area of cysts (and sediments) that permit the formation of seedbeds that could be important for G. catenatum HAB development. Our results provide key information to understand G. catenatum ecology and specifically, to understand the geographic and temporal appearance of HABs in the nGC.	[Castaneda-Quezada, Rigel] Ctr Invest Cient & Educ Super Ensenada, Posgrad Ecol Marina, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico; [Garcia-Mendoza, Ernesto; Rivas, David; Romo-Curiel, Alfonsina E.] Ctr Invest Cient & Educ Super Ensenada, Dept Oceanog Biol, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico; [Ramirez-Mendoza, Rafael] Ctr Invest Cient & Educ Super Ensenada, Dept Oceanog Fis, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico; [Helenes, Javier] Ctr Invest Cient & Educ Super Ensenada, Dept Geol, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico; [Lago-Leston, Asuncion] Ctr Invest Cient & Educ Super Ensenada, Dept Innovac Biomed, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico	CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada	Garcia-Mendoza, E (通讯作者)，Ctr Invest Cient & Educ Super Ensenada, Dept Oceanog Biol, Carr Ensenada Tijuana 3918, Ensenada 22860, Baja California, Mexico.	ergarcia@cicese.mx	Rivas, David/B-3439-2017; Lago-Lestón, Asunción/AFS-1438-2022; Ramirez-Mendoza, Rafael/G-6805-2019; Helenes, Javier/J-5033-2016; Romo Curiel, Alfonsina Eugenia/F-7988-2019	Ramirez-Mendoza, Rafael/0000-0001-6349-6806; Rivas, David/0000-0002-7855-4797; Garcia-Mendoza, Ernesto/0000-0003-1738-7419; Lago-Leston, Asuncion/0000-0003-4361-7732; Helenes, Javier/0000-0002-0135-1879; Castaneda Quezada, Rigel/0000-0002-2679-9522; Romo Curiel, Alfonsina Eugenia/0000-0001-7162-1806	CONACYT scholarship [24805 CV617226]; FORDECYT - CONACYT [260040-2015]; CICESE [625118]	CONACYT scholarship(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); FORDECYT - CONACYT; CICESE	This work was funded by CONACYT scholarship 24805 CV617226; FORDECYT - CONACYT project number 260040-2015. D. Rivas was supported by CICESE through the internal project 625118. The GODAS and NARR products were provided by the National Oceanic and Atmospheric Administration (NOAA) - Earth System Research Laboratory (ESRL) Physical Science Division (PSD) through its website: http://www.esrl.noaa.gov/psd/data/gridded/.The altimeter product was provided by the Archiving, Validation, and Interpretation of Satellite Oceanographic data (AVISO) through its website (https://www.aviso.altimetry.fr).The satellite SST imagery was available at the National Aeronautics and Space Administration (NASA) OceanColor Web: http://oceancolor.gsfc.nasa.gov.	Alvarez-Borrego S., 1975, CIENC, V2, P21; Amorim A, 2001, PHYCOLOGIA, V40, P572, DOI 10.2216/i0031-8884-40-6-572.1; Amorim A., 1998, Harmful Algae. 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Mar. Biol. Assoc. U.K.	SEP	2021	101	6					895	909	PII S0025315421000795	10.1017/S0025315421000795	http://dx.doi.org/10.1017/S0025315421000795		DEC 2021	15	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	ZE6ZL					2025-03-11	WOS:000728569400001
J	Fenizia, S; Weissflog, J; Pohnert, G				Fenizia, Simona; Weissflog, Jerrit; Pohnert, Georg			Cysteinolic Acid Is a Widely Distributed Compatible Solute of Marine Microalgae	MARINE DRUGS			English	Article						cysteinolic acid; osmoadaptation; osmoregulation; ectoine; DMSP; diatoms; phytoplankton; salinity; LC; MS analysis	SULFONIC-ACID; SULFUR; GROWTH; PHYTOPLANKTON; ACCUMULATION; WEISSFLOGII; SALINITY; LIGHT	Phytoplankton rely on bioactive zwitterionic and highly polar small metabolites with osmoregulatory properties to compensate changes in the salinity of the surrounding seawater. Dimethylsulfoniopropionate (DMSP) is a main representative of this class of metabolites. Salinity-dependent DMSP biosynthesis and turnover contribute significantly to the global sulfur cycle. Using advanced chromatographic and mass spectrometric techniques that enable the detection of highly polar metabolites, we identified cysteinolic acid as an additional widely distributed polar metabolite in phytoplankton. Cysteinolic acid belongs to the class of marine sulfonates, metabolites that are commonly produced by algae and consumed by bacteria. It was detected in all dinoflagellates, haptophytes, diatoms and prymnesiophytes that were surveyed. We quantified the metabolite in different phytoplankton taxa and revealed that the cellular content can reach even higher concentrations than the ubiquitous DMSP. The cysteinolic acid concentration in the cells of the diatom Thalassiosira weissflogii increases significantly when grown in a medium with elevated salinity. In contrast to the compatible solute ectoine, cysteinolic acid is also found in high concentrations in axenic algae, indicating biosynthesis by the algae and not the associated bacteria. Therefore, we add this metabolite to the family of highly polar metabolites with osmoregulatory characteristics produced by phytoplankton.	[Fenizia, Simona; Pohnert, Georg] Friedrich Schiller Univ Jena, Inst Inorgan & Analyt Chem, Bioorgan Analyt, Lessingstr 8, D-07743 Jena, Germany; [Fenizia, Simona; Weissflog, Jerrit; Pohnert, Georg] Max Planck Inst Chem Ecol, MPG Fellow Grp, Hans Knoll Str 8, D-07745 Jena, Germany	Friedrich Schiller University of Jena; Max Planck Society	Pohnert, G (通讯作者)，Friedrich Schiller Univ Jena, Inst Inorgan & Analyt Chem, Bioorgan Analyt, Lessingstr 8, D-07743 Jena, Germany.; Pohnert, G (通讯作者)，Max Planck Inst Chem Ecol, MPG Fellow Grp, Hans Knoll Str 8, D-07745 Jena, Germany.	simona.fenizia@uni-jena.de; jweissflog@ice.mpg.de; georg.pohnert@uni-jena.de	Fenizia, Simona/KPB-2675-2024; Pohnert, Georg/D-3721-2013	Fenizia, Simona/0000-0002-3592-9368; Pohnert, Georg/0000-0003-2351-6336	International Max Planck Research School Exploration of Ecological Interactions with Molecular Techniques; Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) [EXC 2051, 390713860]	International Max Planck Research School Exploration of Ecological Interactions with Molecular Techniques; Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)(German Research Foundation (DFG))	This research was funded by the International Max Planck Research School Exploration of Ecological Interactions with Molecular Techniques and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy-EXC 2051-Project-ID 390713860.	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Drugs	DEC	2021	19	12							683	10.3390/md19120683	http://dx.doi.org/10.3390/md19120683			10	Chemistry, Medicinal; Pharmacology & Pharmacy	Science Citation Index Expanded (SCI-EXPANDED)	Pharmacology & Pharmacy	YA2DQ	34940682	gold, Green Published			2025-03-11	WOS:000738150800001
J	Rubino, F; Belmonte, G				Rubino, Fernando; Belmonte, Genuario			Habitat Shift for Plankton: The Living Side of Benthic-Pelagic Coupling in the Mar Piccolo of Taranto (Southern Italy, Ionian Sea)	WATER			English	Article						plankton; life cycles; resting stages; cysts; benthic-pelagic coupling; resurrection ecology	LIFE-HISTORY TRAITS; DINOFLAGELLATE CYSTS; MEDITERRANEAN SEA; RESTING CYSTS; BIOTURBATION; SCRIPPSIELLA; SEDIMENTS; DIAPAUSE; EGGS; RESURRECTION	Resting stages represent the answer for species to the variability of environmental conditions. In confined marine habitats, variability of conditions is high, and bottoms host plankton resting stages in the so-called "marine cyst banks". The Mar Piccolo of Taranto was chosen as a pilot site in which to investigate how marine cyst banks and plankton affect each other in the living part of the benthic-pelagic coupling. The attempt was based on the use of multiple devices for integrated sampling of benthic and pelagic stages and allowed us to identify 207 taxa/categories in the whole system (127 as active forms, 91 as resting stages). The sediments added 80 taxa to the plankton list obtained only from the water column, thus confirming the importance of this kind of approach in perceiving the actual diversity of the studied site. The sediment cyst bank involved 0.15-1.00% of its content in daily benthic-pelagic exchanges, in terms of cyst germination and import, respectively. In addition, the cyst production, which was higher than the cyst germination, is responsible for the existence of a permanent biological reservoir in the sediments. The benthic-pelagic coupling, however, was completely depicted in the present investigation only for seven taxa. This result is due to the still scant knowledge of the life cycles and life histories of single species. Apart from the identification difficulties that still have to be clarified (which cysts belong to which species), the cycle presence/absence is also characterized by the diversification of strategies adopted by each species. The observation of plankton dynamics from the benthos point of view was useful and informative, unveiling a huge assemblage of resting forms in the sediments only minimally affected by cyst import/export, because it is more devoted to a storing role over long periods. Consequently, the continuation of life cycle studies appears necessary to understand the diversity of strategies adopted by the majority of plankton species.	[Rubino, Fernando] Natl Res Council Italy, Water Res Inst CNR IRSA, Unit Taranto, I-72100 Taranto, Italy; [Belmonte, Genuario] Univ Salento, Dipartimento Sci & Tecnol Biol & Ambientali, Lab Zoogeog & Fauna, I-73100 Lecce, Italy	Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR); University of Salento	Belmonte, G (通讯作者)，Univ Salento, Dipartimento Sci & Tecnol Biol & Ambientali, Lab Zoogeog & Fauna, I-73100 Lecce, Italy.	rubino@irsa.cnr.it; genuario.belmonte@unisalento.it	BELMONTE, GENUARIO/AAG-4029-2020; Rubino, Fernando/GOP-0332-2022	belmonte, genuario/0000-0002-7473-116X				Alabiso G, 1997, MAR CHEM, V58, P373, DOI 10.1016/S0304-4203(97)00063-7; Anderson DM, 2012, HARMFUL ALGAE, V14, P10, DOI 10.1016/j.hal.2011.10.012; ARPA Puglia, 2014, MAR PICC TAR SCI TEC, V4, P175; Belmonte G, 1995, OLSEN INT S, P53; Belmonte G, 1998, TRENDS ECOL EVOL, V13, P4, DOI 10.1016/S0169-5347(97)01234-2; Belmonte G., 2010, Metodologie di Studio del Plancton Marino, ISPRAIstituto Superiore per la Protezione e la Ricerca Ambientale, P507; Belmonte G, 2019, OCEANOGR MAR BIOL, V57, P1; Belmonte G, 2013, J MARINE SYST, V128, P222, DOI 10.1016/j.jmarsys.2013.05.007; Belmonte G, 2007, J PLANKTON RES, V29, pI39, DOI 10.1093/plankt/fbl064; Boero F, 1996, TRENDS ECOL EVOL, V11, P177, DOI 10.1016/0169-5347(96)20007-2; BOERO F, 1994, MAR ECOL-P S Z N I, V15, P3, DOI 10.1111/j.1439-0485.1994.tb00038.x; Bravo Isabel, 2014, Microorganisms, V2, P11; COHEN D, 1966, J THEOR BIOL, V12, P119, DOI 10.1016/0022-5193(66)90188-3; Dale B., 1983, P69; Drillet G, 2008, AQUACULTURE, V279, P47, DOI 10.1016/j.aquaculture.2008.04.010; Ferraro L, 2017, MAR BIODIVERS, V47, P887, DOI 10.1007/s12526-016-0523-0; Figueroa RI, 2005, PHYCOLOGIA, V44, P658, DOI 10.2216/0031-8884(2005)44[658:EONFAD]2.0.CO;2; GIANGRANDE A, 1994, OCEANOGR MAR BIOL, V32, P305; Hairston N.G., 2010, PLANKTON INLAND WATE, P247; HAIRSTON NG, 1995, ECOLOGY, V76, P1706, DOI 10.2307/1940704; Ianora A, 1998, J MARINE SYST, V15, P337, DOI 10.1016/S0924-7963(97)00085-7; Ichimi K, 2001, FISHERIES SCI, V67, P1178, DOI 10.1046/j.1444-2906.2001.00378.x; Ishikawa A, 1996, MAR ECOL PROG SER, V140, P169, DOI 10.3354/meps140169; Kerfoot WC, 2004, LIMNOL OCEANOGR, V49, P1300, DOI 10.4319/lo.2004.49.4_part_2.1300; Kremp A, 2006, J PHYCOL, V42, P400, DOI 10.1111/j.1529-8817.2006.00205.x; Marcus NH, 1998, LIMNOL OCEANOGR, V43, P763, DOI 10.4319/lo.1998.43.5.0763; MARCUS NH, 1984, MAR ECOL PROG SER, V15, P47, DOI 10.3354/meps015047; Meier KJS, 2003, MAR MICROPALEONTOL, V48, P321, DOI 10.1016/S0377-8398(03)00028-8; Menu F, 2000, AM NAT, V155, P724, DOI 10.1086/303355; Montresor M., 2010, Metodologie di Studio del Plancton Marino, ISPRAIstituto Superiore per la Protezione e la Ricerca Ambientale, P271; Moscatello S, 2004, SCI MAR, V68, P85, DOI 10.3989/scimar.2004.68s185; Moscatello Salvatore, 2009, Saline Syst, V5, P3, DOI 10.1186/1746-1448-5-3; Olli K, 2002, J PHYCOL, V38, P145, DOI 10.1046/j.1529-8817.2002.01113.x; Pastore M, 1993, MAR PICCOLO, P164; Pati A. 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J	Rodriguez-Villegas, C; Diaz, PA; Riobo, P; Rossignoli, AE; Rodriguez, F; Loures, P; Baldrich, AM; Varela, D; Sandoval-Sanhueza, A; Figueroa, RI				Rodriguez-Villegas, Camilo; Diaz, Patricio A.; Riobo, Pilar; Rossignoli, Araceli E.; Rodriguez, Francisco; Loures, Patricia; Baldrich, Angela M.; Varela, Daniel; Sandoval-Sanhueza, Alondra; Figueroa, Rosa I.			Latitudinal Variation in the Toxicity and Sexual Compatibility of <i>Alexandrium catenella</i> Strains from Southern Chile	TOXINS			English	Article						dinoflagellate; saxitoxins; mating systems; resting cysts; PSP outbreak; Chilean Patagonia	PARALYTIC SHELLFISH TOXINS; DINOFLAGELLATE BLOOMS; LIQUID-CHROMATOGRAPHY; DINOPHYCEAE STRAINS; GENUS ALEXANDRIUM; RESTING CYSTS; DYNAMICS; PROFILE; GROWTH; VARIABILITY	The bloom-forming toxic dinoflagellate Alexandrium catenella was first detected in southern Chile (39.5-55 degrees S) 50 years ago and is responsible for most of the area's cases of paralytic shellfish poisoning (PSP). Given the complex life history of A. catenella, which includes benthic sexual cysts, in this study, we examined the potential link between latitude, toxicity, and sexual compatibility. Nine clones isolated from Chilean Patagonia were used in self- and out-crosses in all possible combinations (n = 45). The effect of latitude on toxicity, reproductive success indexes, and cyst production was also determined. Using the toxin profiles for all strains, consisting of C1, C2, GTX4, GTX1, GTX3, and NeoSTX, a latitudinal gradient was determined for their proportions (%) and content per cell (pg cell(-1)), with the more toxic strains occurring in the north (-40.6 degrees S). Reproductive success also showed a latitudinal tendency and was lower in the north. None of the self-crosses yielded resting cysts. Rather, the production of resting cysts was highest in pairings of clones separated by distances of 1000-1650 km. Our results contribute to a better understanding of PSP outbreaks in the region and demonstrate the importance of resting cysts in fueling new toxic events. They also provide additional evidence that the introduction of strains from neighboring regions is a cause for concern.	[Rodriguez-Villegas, Camilo; Baldrich, Angela M.] Univ Los Lagos, Programa Doctorado Ciencias Menc Conservac & Mane, Camino Chinquihue Km 6, Puerto Montt 5480000, Chile; [Rodriguez-Villegas, Camilo; Diaz, Patricio A.; Baldrich, Angela M.; Varela, Daniel; Sandoval-Sanhueza, Alondra] Univ Los Lagos, Ctr I Mar, Puerto Montt 5480000, Chile; [Rodriguez-Villegas, Camilo; Diaz, Patricio A.; Baldrich, Angela M.] Univ Los Lagos, Ctr Biotechnol & Bioengn, Puerto Montt 5480000, Chile; [Riobo, Pilar] IIM, CSIC, Eduardo Cabello 6, Vigo 36208, Spain; [Rossignoli, Araceli E.] Ctr Invest Marinas, Pedras Coron S-N,Apartado 13, Vilanova De Arousa 36620, Spain; [Rodriguez, Francisco; Loures, Patricia; Figueroa, Rosa I.] IEO, Ctr Oceanog Vigo, CSIC, Subida Radio Faro 50, Vigo 36390, Spain	Universidad de Los Lagos; Universidad de Los Lagos; Universidad de Los Lagos; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM); Spanish Institute of Oceanography; Consejo Superior de Investigaciones Cientificas (CSIC)	Rodriguez-Villegas, C (通讯作者)，Univ Los Lagos, Programa Doctorado Ciencias Menc Conservac & Mane, Camino Chinquihue Km 6, Puerto Montt 5480000, Chile.; Rodriguez-Villegas, C; Diaz, PA (通讯作者)，Univ Los Lagos, Ctr I Mar, Puerto Montt 5480000, Chile.; Rodriguez-Villegas, C; Diaz, PA (通讯作者)，Univ Los Lagos, Ctr Biotechnol & Bioengn, Puerto Montt 5480000, Chile.; Figueroa, RI (通讯作者)，IEO, Ctr Oceanog Vigo, CSIC, Subida Radio Faro 50, Vigo 36390, Spain.	camilo.rodriguez@ulagos.cl; patricio.diaz@ulagos.cl; pilarriobo@iim.csic.es; araceli.escudeiro.rossignoli@xunta.gal; francisco.rodriguez@ieo.es; patricia.loures@ieo.es; ambaldrich@gmail.com; dvarela@ulagos.cl; alondrasandovalsanhueza@gmail.com; francisco.rodriguez@ieo.es	Varela, Daniel/D-9484-2013; Riobo, Pilar/K-1945-2017; Escudeiro Rossignoli, Araceli/ABF-5476-2020; Diaz, Patricio/B-8128-2018; Rodriguez Villegas, Camilo/AAB-8563-2022; Baldrich, Angela M./AAC-8054-2022; Figueroa, Rosa/M-7598-2015; Rodriguez, Francisco/A-5934-2019	Sandoval-Sanhueza, Alondra/0000-0002-4889-4563; Riobo, Pilar/0000-0002-1921-6229; Escudeiro Rossignoli, Araceli/0000-0002-6052-9067; Diaz, Patricio/0000-0002-9403-8151; Rodriguez Villegas, Camilo/0000-0002-1429-2775; Baldrich, Angela M./0000-0002-2624-7357; Figueroa, Rosa/0000-0001-9944-7993; Rodriguez, Francisco/0000-0002-6918-4771	national project from the Spanish Ministry of Science and Innovation and the European Community (FEDER)	national project from the Spanish Ministry of Science and Innovation and the European Community (FEDER)	FundingThis work was funded by a national project from the Spanish Ministry of Science and Innovation and the European Community (FEDER) (Project DIANAS-CTM2017-86066-R) to RIF, a grant for Galician Networks of Excellence (GRC-VGOHAB IN607A-2019/04) from the Innovation Agency of the Xunta de Galicia (GAIN) to RIF, and supported by projects REDES170101 and REDI170575 from the International Cooperation Program of the Chilean National Research and Development Agency (ANID) to PAD.	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Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Food Science & Technology; Toxicology	XZ0GS	34941737	Green Published, gold			2025-03-11	WOS:000737341800001
J	Jerney, J; Rengefors, K; Nagai, S; Krock, B; Sjöqvist, C; Suikkanen, S; Kremp, A				Jerney, Jacqueline; Rengefors, Karin; Nagai, Satoshi; Krock, Bernd; Sjoqvist, Conny; Suikkanen, Sanna; Kremp, Anke			Seasonal genotype dynamics of a marine dinoflagellate: Pelagic populations are homogeneous and as diverse as benthic seed banks	MOLECULAR ECOLOGY			English	Article						adaptation; Alexandrium ostenfeldii; evolution; phytoplankton; resting stage; selection	ALEXANDRIUM-OSTENFELDII BLOOM; GENETIC-STRUCTURE; LIFE-CYCLE; CLONAL DIVERSITY; TOXIN PRODUCTION; DNA EXTRACTION; RESTING CYSTS; SPRING BLOOM; DIATOM; PHYTOPLANKTON	Genetic diversity is the basis for evolutionary adaptation and selection under changing environmental conditions. Phytoplankton populations are genotypically diverse, can become genetically differentiated within small spatiotemporal scales and many species form resting stages. Resting stage accumulations in sediments (seed banks) are expected to serve as reservoirs for genetic information, but so far their role in maintaining phytoplankton diversity and in evolution has remained unclear. In this study we used the toxic dinoflagellate Alexandrium ostenfeldii (Dinophyceae) as a model organism to investigate if (i) the benthic seed bank is more diverse than the pelagic population and (ii) the pelagic population is seasonally differentiated. Resting stages (benthic) and plankton (pelagic) samples were collected at a coastal bloom site in the Baltic Sea, followed by cell isolation and genotyping using microsatellite markers (MS) and restriction site associated DNA sequencing (RAD). High clonal diversity (98%-100%) combined with intermediate to low gene diversity (0.58-0.03, depending on the marker) was found. Surprisingly, the benthic and pelagic fractions of the population were equally diverse, and the pelagic fraction was temporally homogeneous, despite seasonal fluctuation of environmental selection pressures. The results of this study suggest that continuous benthic-pelagic coupling, combined with frequent sexual reproduction, as indicated by persistent linkage equilibrium, prevent the dominance of single clonal lineages in a dynamic environment. Both processes harmonize the pelagic with the benthic population and thus prevent seasonal population differentiation. At the same time, frequent sexual reproduction and benthic-pelagic coupling maintain high clonal diversity in both habitats.	[Jerney, Jacqueline; Suikkanen, Sanna; Kremp, Anke] Univ Helsinki, Tvarminne Zool Stn, Hango, Finland; [Jerney, Jacqueline] Finnish Environm Inst, Ctr Marine Res, Agnes Sjobergin Katu 2, Helsinki 00790, Finland; [Rengefors, Karin] Lund Univ, Dept Biol, Lund, Sweden; [Nagai, Satoshi] Natl Res Inst Fisheries Sci, Yokohama, Kanagawa, Japan; [Krock, Bernd] Alfred WegenerInst Helmholtz Zentrum Polarund & M, Bremerhaven, Germany; [Sjoqvist, Conny] Abo Akad Univ, Fac Sci & Engn Environm & Marine Biol, Turku, Finland; [Kremp, Anke] Leibniz Inst Ostseeforsch Warnemunde, Rostock, Germany	University of Helsinki; Finnish Environment Institute; Lund University; Japan Fisheries Research & Education Agency (FRA); Abo Akademi University; Leibniz Institut fur Ostseeforschung Warnemunde	Jerney, J (通讯作者)，Finnish Environm Inst, Ctr Marine Res, Agnes Sjobergin Katu 2, Helsinki 00790, Finland.	jacqueline.jerney@gmx.at	Rengefors, Karin/K-5873-2019; Sjöqvist, Conny/AAL-1053-2020; Nagai, Satoshi/HOA-8686-2023; Krock, Bernd/ABB-7541-2020	Sjoqvist, Conny/0000-0003-2562-0217; Nagai, Satoshi/0000-0001-7510-0063; Rengefors, Karin/0000-0001-6297-9734; Jerney, Jacqueline/0000-0002-2736-5179; Kremp, Anke/0000-0001-9484-6899; Suikkanen, Sanna/0000-0002-0768-8149	Academy of Finland [310449, 251564]; Japan Society for the Promotion of Science [18KK0182]; Grants-in-Aid for Scientific Research [18KK0182, 21H02274, 23K21233] Funding Source: KAKEN; Academy of Finland (AKA) [251564, 310449] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Japan Society for the Promotion of Science(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Academy of Finland (AKA)(Research Council of Finland)	Academy of Finland, Grant/Award Number: 310449 and 251564; 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Ecol.	JAN	2022	31	2					512	528		10.1111/mec.16257	http://dx.doi.org/10.1111/mec.16257		NOV 2021	17	Biochemistry & Molecular Biology; Ecology; Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biochemistry & Molecular Biology; Environmental Sciences & Ecology; Evolutionary Biology	YD9IG	34716943	Green Published, hybrid			2025-03-11	WOS:000717063700001
J	de Freitas, AD; Aguiar, VMD; Neto, JAB				de Freitas, Alex da S.; Aguiar, Valquiria Maria de C.; Baptista Neto, Jose Antonio			Modern Dinoflagellate Cyst Abundance and Trace Metals as Biomonitoring Tools in a Tropical Bay in Brazil	JOURNAL OF COASTAL RESEARCH			English	Article						&nbsp; Estuary; pollution; eutrophication; dinocysts; inorganic pollutants	RIO-DE-JANEIRO; RECENT MARINE-SEDIMENTS; GUANABARA-BAY; HEAVY-METALS; EUTROPHICATION; ASSEMBLAGES; POLLUTION; HARBOR; WATER; SEA	The spatial distribution of the dinoflagellate cyst assemblages in 11 surface sediment samples collected in Guanabara Bay embayments and associated trace metals revealed the applicability of dinocysts as bioindicators of environmental conditions in estuarine systems. The surface sediment samples presented coarse to fine granulometry. The dinoflagellate cyst analysis followed the standard methodology through the elimination of carbonates and silica. Trace metals were extracted by the evaluation of 1 g of sediment plus a mixture of HNO3 and HCl in a microwave digestion system. Dinoflagellate cyst assemblages were dominated by Operculodinium centrocarpum, Spiniferites spp., and Lingulodinium machaerophorum. Trace metals (Cu, Zn, Pb, Cr, and Ni) showed variations at the different sampling points. The values obtained were Cu (6.7-82.8 mg kg-1), Zn (29.5-355.4 mg kg-1), Pb (18.3-86.2 mg kg-1), Cr (5.1-196.2 mg kg-1), and Ni (19.6-286.0 mg kg-1). Several samples showed high pseudototal concentrations of trace metals, which were above the natural concentrations found in nature. Statistical analysis showed a strong correlation between dinocysts species and some trace metals. Lingulodinium machaerophorum showed a high correlation with 4/5 analysed trace metals and is a eutrophication-sensitive species. However, Brigantedinium sp. presented a positive correlation with all trace metals analysed. The high frequency of L. machaerophorum cysts in all analysed samples associated with several trace metals is indicative of environmental eutrophication. The high availability of trace metals in the surface sediments of Guanabara Bay may be related to the untreated industrial wastes that are dumped directly into the bay.	[de Freitas, Alex da S.; Aguiar, Valquiria Maria de C.; Baptista Neto, Jose Antonio] Univ Fed Fluminense, Inst Geociencias, Dept Geol & Geofis LAGEMAR, Rio De Janeiro, Brazil	Universidade Federal Fluminense	de Freitas, AD (通讯作者)，Univ Fed Fluminense, Inst Geociencias, Dept Geol & Geofis LAGEMAR, Rio De Janeiro, Brazil.	alexsilfre@gmail.com	DE SOUSA NETO, JOSE/KGL-2012-2024; de Freitas, Alex/IUQ-2116-2023; Aguiar, Valquiria/HZJ-5714-2023		Fundacao de Amparo 'a Pesquisa do Estado do Rio de Janeiro (FAPERJ); Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq); CAPES (Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior)	Fundacao de Amparo 'a Pesquisa do Estado do Rio de Janeiro (FAPERJ)(Fundacao Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio De Janeiro (FAPERJ)); Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq)(Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPQ)); CAPES (Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior)(Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES))	This study was sponsored by the Fundacao de Amparo 'a Pesquisa do Estado do Rio de Janeiro (FAPERJ), the Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq), and CAPES (Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior).	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Coast. Res.	NOV	2021	37	6					1247	1259		10.2112/JCOASTRES-D-21-00030.1	http://dx.doi.org/10.2112/JCOASTRES-D-21-00030.1			13	Environmental Sciences; Geography, Physical; Geosciences, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Physical Geography; Geology	YS7VG					2025-03-11	WOS:000750880400013
J	Xu, LJ; Yang, DZ; Yu, RC; Feng, XR; Gao, GD; Cui, X; Bai, T; Yin, BS				Xu, Lingjing; Yang, Dezhou; Yu, Rencheng; Feng, Xingru; Gao, Guandong; Cui, Xuan; Bai, Tao; Yin, Baoshu			Nonlocal Population Sources Triggering Dinoflagellate Blooms in the Changjiang Estuary and Adjacent Seas: A Modeling Study	JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES			English	Article						dinoflagellate; Changjiang Estuary and adjacent seas; nonlocal population source; adjoint model; coupled physical-biological model	EAST CHINA SEA; YELLOW SEA; ECOSYSTEM MODEL; SURFACE; SYSTEM; SEDIMENTS; IMPACTS; ADJOINT; GROWTH; CYSTS	Dinoflagellates frequently cause harmful, large-scale spring algal blooms in the Changjiang Estuary and adjacent seas of China. However, the population source of some dinoflagellates in this area remains unknown. We deployed an adjoint model and a coupled physical-biological model to explore the possible nonlocal dinoflagellate population sources to the Changjiang Estuary and adjacent seas. Our simulation results revealed that the Taiwan Strait and the area east of Taiwan are two nonlocal source regions of May dinoflagellate blooms in the study area. Under different hydrodynamic and biochemical conditions, dinoflagellates from the Taiwan Strait directly triggered dinoflagellate blooms from south to north along the coast of China. Dinoflagellates from the area east of Taiwan first concentrated and bred in the offshore temperature frontal area and then spread southwestward, triggering dinoflagellate blooms along the Zhejiang coast. Due to the different influence mechanisms, it took longer for the initial dinoflagellate population in the Taiwan Strait to exert the same impact on dinoflagellate blooms in the study area as that from the area east of Taiwan. Moreover, the density and appearance time of the initial dinoflagellate population in the Taiwan Strait affected their biomass and bloom range in the study area. Even a small initial dinoflagellate population east of Taiwan could trigger a bloom in the study area. This study suggests the target domains for finding nonlocal dinoflagellate cysts and provides a strategy to predict dinoflagellate blooms in the Changjiang Estuary adjacent area by monitoring dinoflagellate biomass in the nonlocal source regions.	[Xu, Lingjing; Yang, Dezhou; Feng, Xingru; Gao, Guandong; Cui, Xuan; Yin, Baoshu] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Ocean Circulat & Waves, Qingdao, Peoples R China; [Xu, Lingjing; Yang, Dezhou; Feng, Xingru; Gao, Guandong; Cui, Xuan; Yin, Baoshu] Chinese Acad Sci, Inst Oceanol, CAS Engn Lab Marine Ranching, Qingdao, Peoples R China; [Xu, Lingjing; Yang, Dezhou; Feng, Xingru; Gao, Guandong; Cui, Xuan; Yin, Baoshu] Qingdao Natl Lab Marine Sci Technol, Funct Lab Ocean Dynam & Climate, Qingdao, Peoples R China; [Xu, Lingjing; Yang, Dezhou; Yu, Rencheng; Feng, Xingru; Gao, Guandong; Cui, Xuan; Yin, Baoshu] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China; [Yang, Dezhou; Yu, Rencheng; Cui, Xuan; Yin, Baoshu] Univ Chinese Acad Sci, Beijing, Peoples R China; [Yu, Rencheng] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Bai, Tao] North China Sea Marine Forecasting Ctr State Ocea, Qingdao, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Institute of Oceanology, CAS	Yang, DZ; Yin, BS (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Ocean Circulat & Waves, Qingdao, Peoples R China.; Yang, DZ; Yin, BS (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Engn Lab Marine Ranching, Qingdao, Peoples R China.; Yang, DZ; Yin, BS (通讯作者)，Qingdao Natl Lab Marine Sci Technol, Funct Lab Ocean Dynam & Climate, Qingdao, Peoples R China.; Yang, DZ; Yin, BS (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China.; Yang, DZ; Yin, BS (通讯作者)，Univ Chinese Acad Sci, Beijing, Peoples R China.	yangdezhou@qdio.ac.cn; bsyin@qdio.ac.cn	Gao, Guandong/KBD-1950-2024; Yu, Rencheng/J-4450-2017	Cui, Xuan/0000-0002-7725-0687; Xu, Lingjing/0000-0002-7230-7752; Gao, Guandong/0000-0002-7348-876X; Yu, Rencheng/0000-0001-6430-9224	Strategic Priority Research Program of the Chinese Academy of Sciences [XDB42000000, XDA19060203, XDA19060202]; National Natural Science Foundation of China (NSFC) [41876019, 42076022, 42090044]; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Science [COMS2020Q01]; NSFC-Shandong Joint Fund [U1806227]; CAS-CSIRO BAU project [133137KYSB20180141]; High Performance Computing Center at the IOCAS; Youth Innovation Promotion Association CAS; East China Sea ocean observation and research station of OMORN	Strategic Priority Research Program of the Chinese Academy of Sciences(Chinese Academy of Sciences); National Natural Science Foundation of China (NSFC)(National Natural Science Foundation of China (NSFC)); Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Science; NSFC-Shandong Joint Fund; CAS-CSIRO BAU project; High Performance Computing Center at the IOCAS; Youth Innovation Promotion Association CAS; East China Sea ocean observation and research station of OMORN	This study was supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (Nos. XDB42000000, XDA19060203, and XDA19060202), the National Natural Science Foundation of China (NSFC) (Nos. 41876019, 42076022, and 42090044), Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Science (No. COMS2020Q01), the NSFC-Shandong Joint Fund (No U1806227), the CAS-CSIRO BAU project (No. 133137KYSB20180141). It was also supported by the High Performance Computing Center at the IOCAS, East China Sea ocean observation and research station of OMORN, and the Youth Innovation Promotion Association CAS.	Cao L, 2021, OCEAN DYNAM, V71, P237, DOI 10.1007/s10236-020-01427-8; [岑竞仪 Cen Jingyi], 2017, [海洋与湖沼, Oceanologia et Limnologia Sinica], V48, P1022; Chai F, 2002, DEEP-SEA RES PT II, V49, P2713, DOI 10.1016/S0967-0645(02)00055-3; Chen C. T. 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Geophys. Res.-Biogeosci.	NOV	2021	126	11							e2021JG006424	10.1029/2021JG006424	http://dx.doi.org/10.1029/2021JG006424			19	Environmental Sciences; Geosciences, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Geology	XD1KF					2025-03-11	WOS:000722469900016
J	Rodrigues, RV; Patil, JS				Rodrigues, Roy Valentino; Patil, Jagadish Siddalingappa			Salinity changes may influence dinoflagellate cyst morphometry: data from monsoon-influenced tropical coastal ecosystems	JOURNAL OF PLANKTON RESEARCH			English	Article						dinoflagellate; cyst morphometry; Pyrophacus steinii; Protoperidinium pentagonum; salinity; estuarine; marine	STEINII SCHILLER WALL; SPATIAL-DISTRIBUTION; RECENT SEDIMENTS; RESTING CYSTS; LIFE-CYCLE; WEST-COAST; BALTIC SEA; BLACK-SEA; MORPHOLOGY; DINOPHYCEAE	Generally, dinoflagellate cyst morphology is species specific. Their variability due to environmental factors (temperature and salinity) makes them potential proxies for such factors. However, there is a dearth of information on the variability of cystmorphology from monsoon-influenced coastal ecosystems. This study on distribution and variability in the dinocyst morphometry of Pyrophacus steinii and Protoperidinium pentagonum from estuarine (Cochin port and Zuari estuary) and marine (New Mangalore port) ecosystems along the Indian west coast revealed that both are common and euryhaline species. However, variability in cyst morphometry was observed and correlated salinity values between the ecosystems. Other parameters (i.e. the prevalence of narrow temperature ranges and nutrient-rich conditions) may not be dominant in influencing cysts morphometry. Cyst length, breadth and processes length (only in P. steinii) of both were relatively larger and smaller at salinity ranges higher and lower than 25 psu, respectively. The data presented for different ecosystems are comparable in most parameters except salinity variations. This study extends the ranges of records for both species. Pyrophacus steinii cysts were significantly larger (up to 120 mu m in Zuari estuary) than literature reports on cysts from higher salinity systems and salinity-related variability in P. pentagonum cyst size indicates notable potential proxy indicator of salinity.	[Rodrigues, Roy Valentino; Patil, Jagadish Siddalingappa] CSIR, Natl Inst Oceanog, Panaji 403004, Goa, India; [Rodrigues, Roy Valentino] Goa Univ, Sch Earth Ocean & Atmospher Sci, Taleigao Plateau 403206, Goa, India	Council of Scientific & Industrial Research (CSIR) - India; CSIR - National Institute of Oceanography (NIO); Goa University	Patil, JS (通讯作者)，CSIR, Natl Inst Oceanog, Panaji 403004, Goa, India.	patilj@nio.org			DG Shipping, Ministry of Shipping, Govt. of India [GAP 2429]	DG Shipping, Ministry of Shipping, Govt. of India	DG Shipping, Ministry of Shipping, Govt. of India funded project Ballast Water Management Program India-BAMPI (GAP 2429).	BERNSTEIN H, 1985, SCIENCE, V229, P1277, DOI 10.1126/science.3898363; Blackburn S., 2005, Algal Culturing Techniques, P399; Brenner WW, 2005, PALAEOGEOGR PALAEOCL, V220, P227, DOI 10.1016/j.palaeo.2004.12.010; Burt A, 2000, EVOLUTION, V54, P337; Chai ZY, 2020, J OCEANOL LIMNOL, V38, P114, DOI 10.1007/s00343-019-9077-x; D'Costa PM, 2008, ESTUAR COAST SHELF S, V77, P77, DOI 10.1016/j.ecss.2007.09.002; D'Silva MS, 2012, J SEA RES, V73, P86, DOI 10.1016/j.seares.2012.06.013; DALE B., 1996, PALYNOLOGY PRINCIPLE, P1249; Ellegaard M, 2002, J PHYCOL, V38, P775, DOI 10.1046/j.1529-8817.2002.01062.x; Ellegaard M, 1998, J PLANKTON RES, V20, P1743, DOI 10.1093/plankt/20.9.1743; Ellegaard M, 2000, REV PALAEOBOT PALYNO, V109, P65, DOI 10.1016/S0034-6667(99)00045-7; Faust MA, 1998, J PHYCOL, V34, P173, DOI 10.1046/j.1529-8817.1998.340173.x; Fensome R. 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Plankton Res.	NOV-DEC	2021	43	6					853	864		10.1093/plankt/fbab072	http://dx.doi.org/10.1093/plankt/fbab072		OCT 2021	12	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	XO1OH					2025-03-11	WOS:000729961900009
J	Shin, HH; Li, Z; Kim, HJ; Park, BS; Lee, J; Shin, AY; Park, TG; Lee, KW; Han, KH; Youn, JY; Kwak, KY; Seo, MH; Kim, D; Son, MH; Kim, DJ; Shin, K; Lim, WA				Shin, Hyeon Ho; Li, Zhun; Kim, Hyun Jung; Park, Bum Soo; Lee, Jihoon; Shin, A-Young; Park, Tae-Gyu; Lee, Kyun-Woo; Han, Kyung Ha; Youn, Joo Yeon; Kwak, Kyung Yoon; Seo, Min Ho; Kim, Daekyung; Son, Moon Ho; Kim, Dug-Jin; Shin, Kyoungsoon; Lim, Weol-Ae			<i>Alexandrium catenella</i> (Group I) and <i>A</i>. <i>pacificum</i> (Group IV) cyst germination, distribution, and toxicity in Jinhae-Masan Bay, Korea	HARMFUL ALGAE			English	Article						Germination temperature; Ellipsoidal alexandrium cyst; Morphology; Phylogeny; GTX-3; GTX-4	SPECIES COMPLEX DINOPHYCEAE; PARALYTIC SHELLFISH TOXINS; TAMARENSE RESTING CYSTS; GENUS ALEXANDRIUM; DINOFLAGELLATE CYSTS; YELLOW SEA; FUNDYENSE; SAXITOXIN; DYNAMICS; BLOOMS	To better understand the outbreaks of paralytic shellfish poisoning and bloom dynamics caused by Alexandrium species in Jinhae-Masan Bay, Korea, the germination and distributions of ellipsoidal Alexandrium cysts were investigated, and paralytic shellfish toxins (PSTs) profiles and contents were determined using strains established from germling cells. The phylogeny and morphological observations revealed that the germinated vegetative cells from ellipsoidal cysts collected from the surface sediments in Jinhae-Masan Bay belong to Alexandrium catenella (Group I) and A. pacificum (Group IV) nested within A. tamarense species complex. Cyst germinations of A. catenella (Group I) were observed at only 10 degrees C, whereas cysts of A. pacificum (Group IV) could germinate at temperature ranges of 10 to 25 degrees C. Maximum germination success (85%) for isolated cysts occurred at 15 degrees C, and the germling cells were A. pacificum (Group IV). The results indicate that the variation in water temperature in Jinhae-Masan Bay can control the seasonal variations in germination of cysts of A. catenella (Group I) and A. pacificum (Group IV). The germination rates of ellipsoidal Alexandrium cysts were different among sampling sites in Jinhae-Masan Bay, probably because of differences in distribution and abundance of A. catenella (Group I) and A. pacificum (Group IV) in the sediments. The ellipsoidal Alexandrium cyst concentrations were much higher in February than in August, however the distributions were similar. Gonyautoxins 3 and 4 (GTX-3 and GTX-4) contributed a large proportion (>90%) of the toxins produced by strains A. catenella (Group I) and A. pacificum (Group IV) established from germling cells, and the total cellular contents were higher in A. catenella (Group I) than in A. pacificum (Group IV).	[Shin, Hyeon Ho; Kim, Hyun Jung; Han, Kyung Ha; Youn, Joo Yeon; Kwak, Kyung Yoon] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea; [Li, Zhun] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures KC, Biol Resource Ctr, Jeonbuk 56212, South Korea; [Han, Kyung Ha] Pukyong Natl Univ, Busan 48513, South Korea; [Park, Bum Soo] Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan 49111, South Korea; [Lee, Jihoon; Shin, A-Young; Lee, Kyun-Woo] Korea Inst Ocean Sci & Technol, Marine Biotechnol Res Ctr, Busan 49111, South Korea; [Park, Tae-Gyu] Natl Inst Fisheries Sci, Tongyeong 53085, South Korea; [Seo, Min Ho] Marine Ecol Res Ctr, Yeosu 59697, South Korea; [Kim, Daekyung] Korea Basic Sci Inst KBSI, Biol Daegu Ctr, Daegu, South Korea; [Son, Moon Ho; Lim, Weol-Ae] Natl Inst Fisheries Sci, Busan 619705, South Korea; [Kim, Dug-Jin] Korea Inst Ocean Sci & Technol, Marine Observat Team, Geoje 656830, South Korea; [Shin, Kyoungsoon] Korea Inst Ocean Sci & Technol, Ballast Water Res Ctr, Geoje 53201, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Korea Research Institute of Bioscience & Biotechnology (KRIBB); Pukyong National University; Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST); National Institute of Fisheries Science; Korea Basic Science Institute (KBSI); National Institute of Fisheries Science; Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST)	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea.	shh961121@kiost.ac.kr	Park, Bum/W-3178-2017; Li, Zhun/IUQ-5309-2023	LI, ZHUN/0000-0001-8961-9966; Shin, A-Young/0000-0002-9799-7999; Shin, Hyeon Ho/0000-0002-9711-6717	MarineBiotics project - Ministry of Oceans and Fisheries [20210469]; NIFS [R2021064]; KIOST [PE99921]	MarineBiotics project - Ministry of Oceans and Fisheries; NIFS; KIOST	This work was supported by grants from MarineBiotics project (20210469) funded by the Ministry of Oceans and Fisheries, NIFS (R2021064) and KIOST (PE99921) projects. Two anonymous reviewers are thanked for constructive suggestions that greatly improved the manuscript.	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J	Liu, YY; Deng, YY; Shang, LX; Yi, L; Hu, ZX; Tang, YZ				Liu, Yuyang; Deng, Yunyan; Shang, Lixia; Yi, Liang; Hu, Zhangxi; Tang, Ying Zhong			Geographic distribution and historical presence of the resting cysts of <i>Karenia mikimotoi</i> in the seas of China	HARMFUL ALGAE			English	Article						Harmful algal blooms (HABs); Karenia mikimotoi; Resting cyst; Cyst mapping; Historical presence	DINOFLAGELLATE COCHLODINIUM-POLYKRIKOIDES; TIME PCR ASSAY; RED TIDE; GONYAULAX-TAMARENSIS; BLOOM; EUTROPHICATION; DINOPHYCEAE; GULF; BAY; IDENTIFICATION	The toxic dinoflagellate Karenia mikimotoi frequently forms harmful algal blooms (HABs) and thus causes massive kills of fish and shellfish in worldwide coastal waters, which has led to intensive investigations on multiple facets of the species. Following our recent discovery of K. mikimotoi forming resting cyst, a very possible mechanism for the inoculation of blooms and geographic expansion for this and many other HABs-causing species, here we report our detection of K. mikimotoi resting cysts in 125 surface sediment samples collected from the coastal waters (covering a latitude range from 18.29 degrees N to 39.85 degrees N) and 3 sediment cores (accumulated in 70-100 years) collected from the East China Sea where are adjacent to the frequent blooming areas of K. mikimotoi. Via applications of quantitative real-time PCR (LSU rDNA-targeted), species-specific fluorescence in situ hybridization (FISH), and nested-PCR-and-sequencing to both types of the sediment samples that were pretreated with sodium polytungstate solution (SPT), we demonstrated that 1) K. mikimotoi cysts are widely present in surface sediments of the China seas (Bohai Sea (BS), Yellow Sea (YS), East China Sea (ECS), and South China Sea (SCS)), 2) the abundance of cysts is generally low (0 to 33 cysts in 32 g wet sediment), with that in the ECS and the SCS being higher than that in the YS and the BS, and the highest abundance was observed in sites of the ECS (e.g., Ningde, Fujian province) where the blooms of the species occurred frequently, as quantified by both methods, and 3) the cysts of K. mikimotoi have been present in the sediments of the ECS since 1970s, a short time prior to the first recorded bloom of K. mikimotoi in the SCS at 1980s. Our results not only demonstrated the wide geographic distribution of resting cyst of K. mikimotoi along the coast of China, but also proved a 50 years preservation of the cysts in the sediments of coastal area prone to forming frequent blooms. We consider our results have provided critical insights into the mechanisms of frequent bloom outbreaks and global distribution of K. mikimotoi in general, and particularly into the historical origin of K. mikimotoi in China. Further investigations are suggested to focus on on-site surveys for the cyst production and germination rates.	[Liu, Yuyang; Deng, Yunyan; Shang, Lixia; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Liu, Yuyang; Deng, Yunyan; Shang, Lixia; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Liu, Yuyang; Deng, Yunyan; Shang, Lixia; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Yi, Liang] Tongji Univ, State Key Lab Marine Geol, Shanghai, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Tongji University	Hu, ZX; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Hu, ZX; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Hu, ZX; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China.	zhu@qdio.ac.cn; 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J	Baek, SS; Pyo, J; Kwon, YS; Chun, SJ; Baek, SH; Ahn, CY; Oh, HM; Kim, YO; Cho, KH				Baek, Sang-Soo; Pyo, JongCheol; Kwon, Yong Sung; Chun, Seong-Jun; Baek, Seung Ho; Ahn, Chi-Yong; Oh, Hee-Mock; Kim, Young Ok; Cho, Kyung Hwa			Deep Learning for Simulating Harmful Algal Blooms Using Ocean Numerical Model	FRONTIERS IN MARINE SCIENCE			English	Article						harmful algal blooms; deep learning; convolutional neural network; classification; regression	DINOFLAGELLATE ALEXANDRIUM-TAMARENSE; TOXIC DINOFLAGELLATE; TRANSPORT PATHWAYS; FRESH-WATER; BAY; CATENELLA; SALINITY; CYST; DINOPHYCEAE; GERMINATION	In several countries, the public health and fishery industries have suffered from harmful algal blooms (HABs) that have escalated to become a global issue. Though computational modeling offers an effective means to understand and mitigate the adverse effects of HABs, it is challenging to design models that adequately reflect the complexity of HAB dynamics. This paper presents a method involving the application of deep learning to an ocean model for simulating blooms of Alexandrium catenella. The classification and regression convolutional neural network (CNN) models are used for simulating the blooms. The classification CNN determines the bloom initiation while the regression CNN estimates the bloom density. GoogleNet and Resnet 101 are identified as the best structures for the classification and regression CNNs, respectively. The corresponding accuracy and root means square error values are determined as 96.8% and 1.20 [log(cells L-1)], respectively. The results obtained in this study reveal the simulated distribution to follow the Alexandrium catenella bloom. Moreover, Grad-CAM identifies that the salinity and temperature contributed to the initiation of the bloom whereas NH4-N influenced the growth of the bloom.	[Baek, Sang-Soo; Cho, Kyung Hwa] Ulsan Natl Inst Sci & Technol, Sch Urban & Environm Engn, Ulsan, South Korea; [Pyo, JongCheol] Korea Environm Inst, Ctr Environm Data Strategy, Sejong, South Korea; [Kwon, Yong Sung] Natl Inst Ecol, Div Ecol Assessment Res, Natl Inst Ecol, Environm Impact Assessment Team, Seocheon, South Korea; [Chun, Seong-Jun] Natl Inst Ecol NIE, LMO Res Team, Bur Ecol Res, Seocheon, South Korea; [Baek, Seung Ho] Korea Inst Ocean Sci & Technol, Risk Assessment Res Ctr, Geoje, South Korea; [Ahn, Chi-Yong; Oh, Hee-Mock] Korea Res Inst Biosci & Biotechnol KRIBB, Cell Factory Res Ctr, Daejeon, South Korea; [Kim, Young Ok] Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan, South Korea	Ulsan National Institute of Science & Technology (UNIST); Korea Environment Institute (KEI); National Institute of Ecology; Korea Institute of Ocean Science & Technology (KIOST); Korea Research Institute of Bioscience & Biotechnology (KRIBB); Korea Institute of Ocean Science & Technology (KIOST)	Cho, KH (通讯作者)，Ulsan Natl Inst Sci & Technol, Sch Urban & Environm Engn, Ulsan, South Korea.; Kim, YO (通讯作者)，Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan, South Korea.	yokim@kiost.ac.kr; khcho@unist.ac.kr	Ahn, Chi-Yong/AAI-8370-2020; KIM, YOUNG JIN/E-9374-2011; Baek, SangSoo/LFT-3581-2024	Pyo, JongCheol/0000-0001-9204-5879; Chun, Seong Jun/0000-0001-7037-6968	Ministry of Science, ICT & Future Planning [NRF-2016M1A5A1027457]; Korean Institute of Ocean Science and Technology [PE99912]	Ministry of Science, ICT & Future Planning(Ministry of Science, ICT & Future Planning, Republic of Korea); Korean Institute of Ocean Science and Technology	Funding This study was supported by the Ministry of Science, ICT & Future Planning (grant NRF-2016M1A5A1027457) and Korean Institute of Ocean Science and Technology (PE99912).	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Mar. Sci.	OCT 12	2021	8								729954	10.3389/fmars.2021.729954	http://dx.doi.org/10.3389/fmars.2021.729954			13	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	WP6NC		Green Published, gold			2025-03-11	WOS:000713244900001
J	Anderson, DM; Fachon, E; Pickart, RS; Lin, PG; Fischer, AD; Richlen, ML; Uva, V; Brosnahan, ML; McRaven, L; Bahr, F; Lefebvre, K; Grebmeier, JM; Danielson, SL; Lyu, YH; Fukai, Y				Anderson, Donald M.; Fachon, Evangeline; Pickart, Robert S.; Lin, Peigen; Fischer, Alexis D.; Richlen, Mindy L.; Uva, Victoria; Brosnahan, Michael L.; McRaven, Leah; Bahr, Frank; Lefebvre, Kathi; Grebmeier, Jacqueline M.; Danielson, Seth L.; Lyu, Yihua; Fukai, Yuri			Evidence for massive and recurrent toxic blooms of <i>Alexandrium catenella</i> in the Alaskan Arctic	PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA			English	Article						harmful algal bloom; HAB; Alexandrium; Alaskan Arctic; climate	CHUKCHI-SEA; DINOFLAGELLATE CYSTS; RESTING CYSTS; FUNDYENSE BLOOMS; PACIFIC WATER; TIME-SERIES; GULF; MAINE; DINOPHYCEAE; PATTERNS	Among the organisms that spread into and flourish in Arctic waters with rising temperatures and sea ice loss are toxic algae, a group of harmful algal bloom species that produce potent biotoxins. Alexandrium catenella, a cyst-forming dinoflagellate that causes paralytic shellfish poisoning worldwide, has been a significant threat to human health in southeastern Alaska for centuries. It is known to be transported into Arctic regions in waters transiting northward through the Bering Strait, yet there is little recognition of this organism as a human health concern north of the Strait. Here, we describe an exceptionally large A. catenella benthic cyst bed and hydrographic conditions across the Chukchi Sea that support germination and development of recurrent, locally originating and self-seeding blooms. Two prominent cyst accumulation zones result from deposition promoted by weak circulation. Cyst concentrations are among the highest reported globally for this species, and the cyst bed is at least 6x larger in area than any other. These extraordinary accumulations are attributed to repeated inputs from advected southern blooms and to localized cyst formation and deposition. Over the past two decades, warming has likely increased the magnitude of the germination flux twofold and advanced the timing of cell inoculation into the euphotic zone by 20 d. Conditions are also now favorable for bloom development in surface waters. The region is poised to support annually recurrent A. catenella blooms that are massive in scale, posing a significant and worrisome threat to public and ecosystem health in Alaskan Arctic communities where economies are subsistence based.	[Anderson, Donald M.; Fachon, Evangeline; Fischer, Alexis D.; Richlen, Mindy L.; Uva, Victoria; Brosnahan, Michael L.] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA; [Pickart, Robert S.; Lin, Peigen; McRaven, Leah; Bahr, Frank] Woods Hole Oceanog Inst, Phys Oceanog Dept, Woods Hole, MA 02543 USA; [Lefebvre, Kathi] NOAA, Environm & Fisheries Sci Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, Seattle, WA 98112 USA; [Grebmeier, Jacqueline M.] Univ Maryland, Chesapeake Biol Lab, Ctr Environm Sci, Solomons, MD 20688 USA; [Danielson, Seth L.] Univ Alaska Fairbanks, Coll Fisheries & Ocean Sci, Fairbanks, AK 99775 USA; [Lyu, Yihua] State Ocean Adm, South China Sea Environm Monitoring Ctr, Guangzhou 510300, Peoples R China; [Fukai, Yuri] Hokkaido Univ, Grad Sch Environm Sci, Sapporo, Hokkaido 0600810, Japan	Woods Hole Oceanographic Institution; Woods Hole Oceanographic Institution; National Oceanic Atmospheric Admin (NOAA) - USA; University System of Maryland; University of Maryland Center for Environmental Science; University of Alaska System; University of Alaska Fairbanks; Hokkaido University	Anderson, DM (通讯作者)，Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA.	danderson@whoi.edu	Fischer, Alexis/M-4531-2019; Grebmeier, Jacqueline/L-9805-2013	McRaven, Leah/0000-0002-4552-4313; Bahr, Frank/0000-0002-1736-309X; Anderson, Donald/0000-0002-3983-6388; Brosnahan, Michael/0000-0002-2620-7638; Fachon, Evangeline/0000-0003-2933-7283; Lin, Peigen/0000-0002-2410-976X; Grebmeier, Jacqueline/0000-0001-7624-3568	NSF Office of Polar Programs [OPP-1823002, OPP-1733564]; National Ocanic and Atmospheric Administration (NOAA) Arctic Research program (through the Cooperative Institute for the North Atlantic Region [CINAR] [NA14OAR4320158, NA19OAR4320074]; University of Maryland Center for Environmental Science [CINAR 22309.07 UMCES]; NOAA's Center for Coastal and Ocean Studies Ecology and Oceanography of Harmful Algal Blooms (ECOHAB) Program [NA20NOS4780195]; NSF [OCE-1840381]; NIH through the Woods Hole Center for Oceans and Human Health [1P01-ES028938-01]; North Pacific Research Board IERP [A91-99a, A91-00a]; National Institute of Environmental Health Sciences [P01ES028938] Funding Source: NIH RePORTER	NSF Office of Polar Programs(National Science Foundation (NSF)); National Ocanic and Atmospheric Administration (NOAA) Arctic Research program (through the Cooperative Institute for the North Atlantic Region [CINAR]; University of Maryland Center for Environmental Science; NOAA's Center for Coastal and Ocean Studies Ecology and Oceanography of Harmful Algal Blooms (ECOHAB) Program; NSF(National Science Foundation (NSF)); NIH through the Woods Hole Center for Oceans and Human Health; North Pacific Research Board IERP; National Institute of Environmental Health Sciences(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Environmental Health Sciences (NIEHS))	We acknowledge that the western and northern coasts of Alaska, along which this research was conducted, are the ancestral lands of the Yup'ik and Inupiat People past, present, and future. We honor with gratitude these lands and waters and the Yup'ik and Inupiat People. We gratefully acknowledge the following: Lee Cooper, Christina Goethel, Caitlin Meadows, and Laura Gemery for benthic sampling assistance; Matthew Capucci, Madison Shankle, and Anna Apostel for plankton sam-pling; Olga Kosnyrev and Valery Kosnyrev for cyst mapping support; Finn Morrison for cruise preparation and sample processing; Anna Mounsey for IERP sample collection; and the USCGC Healy crew and Ship-based Science Technical Support in the Arctic (STARC) technicians for general shipboard assistance. Thanks also to Hai-Feng Gu for generously providing sediments collected from the Chukchi Sea. Funding for D.M.A., R.S.P., E.F., P.L., A.D.F., V.U., M.L.B., L.M., F.B., and M.L.R. was provided by grants from the NSF Office of Polar Programs (Grants OPP-1823002 and OPP-1733564) and the National Ocanic and Atmospheric Administration (NOAA) Arctic Research program (through the Cooperative Institute for the North Atlantic Region [CINAR; Grants NA14OAR4320158 and NA19OAR4320074] ) , for J.M.G. through CINAR 22309.07 UMCES (University of Maryland Center for Environmental Science) , and for D.M.A. and K.L. through NOAA's Center for Coastal and Ocean Studies Ecology and Oceanography of Harmful Algal Blooms (ECOHAB) Program (NA20NOS4780195) . Funding for D.M.A., M.L.R., M.L.B., E.F., V.U., and A.D.F. was also provided by NSF (Grant OCE-1840381) and NIH (Grant 1P01-ES028938-01) through the Woods Hole Center for Oceans and Human Health. S.L.D. was supported by North Pacific Research Board IERP Grants A91-99a and A91-00a. This is IERP publication ArcticIERP-41 and ECOHAB Contribution No. ECO983.	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Natl. Acad. Sci. U. S. A.	OCT 12	2021	118	41							e2107387118	10.1073/pnas.2107387118	http://dx.doi.org/10.1073/pnas.2107387118			11	Multidisciplinary Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Science & Technology - Other Topics	WI8YT	34607950	Green Submitted, hybrid, Green Published			2025-03-11	WOS:000708641500009
J	Wang, ZH; Lei, MD; Ji, SH; Xie, CL; Chen, JZ; Li, WG; Jiang, T				Wang, Zhaohui; Lei, Mingdan; Ji, Shuanghui; Xie, Changliang; Chen, Jiazhuo; Li, Weiguo; Jiang, Tao			Comparison in diversity of eukaryotic algae in surface sediments from different functional sea areas of Qingdao coast, the Yellow Sea, China: a metabarcoding approach	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						benthic microalgae; 18S rDNA; Metabarcoding; resting stages; Jiaozhou Bay; Yellow Sea	AZADINIUM-POPORUM DINOPHYCEAE; PHYTOPLANKTON COMMUNITY; KARLODINIUM-VENEFICUM; JIAOZHOU BAY; MICROBIAL EUKARYOTES; RESTING STAGES; 1ST RECORD; DINOFLAGELLATE; WATERS; MORPHOLOGY	Surface sediment samples were collected in three different functional sea areas in Qingdao coast, East China, including the inner Jiaozhou Bay, the Laoshan Coast, and the Amphioxus Reserve area. Diversity and community structure of eukaryotic algae especially those of phytoplankton resting stages were assessed by metabarcoding V4 region of the 18S rDNA. Biogenic elements including total organic carbon (TOC), organic matter (OM), total nitrogen (TN), total phosphorus (TP), and biogenic silicon (BSi) were analyzed. A total of 1 496 eukaryotic operational taxonomic units (OTUs) were measured, including 207 algal OTUs, which contributed to 13.84% of the total OTUs. Ninety-eight species in 8 phyla, 24 classes of eukaryotic algae were detected. Among them, 47 species have been reported to form resting stages, and 12 species are firstly recorded in Chinese coastal waters. Dinoflagellates dominated in both DNA reads and OTU richness, which contributed to 73.02% and 61.35% of the eukaryotic algal sequences and OTU richness, respectively. DNA reads, OTU richness and alpha diversity indexes of eukaryotic algae were higher in the Laoshan Coast, and lower in Jiaozhou Bay. Eukaryotic algal community differed in the three sea areas, which was dominated by chrysophytes in Jiaozhou Bay, by dinoflagellates in the Laoshan Coast, and co-dominated by dinoflagellates and chrysophytes in the Amphioxus Reserve area. Clustering analysis showed that the Laoshan Coast and the Amphioxus Reserve area are clustered together, while Jiaozhou Bay is clustered separately. Thirty-six harmful algal bloom (HAB) species were detected, and 10 species have been reported to form blooms in Jiaozhou Bay and the Qingdao coast before. Some of these species occurred widely and dominantly in this study, suggesting high potential risk of HABs in the Qingdao coastal area.	[Wang, Zhaohui; Lei, Mingdan; Ji, Shuanghui; Xie, Changliang; Chen, Jiazhuo; Li, Weiguo] Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China; [Wang, Zhaohui] Minist Educ, Engn Res Ctr Trop & Subtrop Aquat Ecol Engn, Guangzhou 510632, Peoples R China; [Jiang, Tao] Yantai Univ, Sch Ocean, Yantai 264005, Peoples R China	Jinan University; Yantai University	Wang, ZH (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China.; Wang, ZH (通讯作者)，Minist Educ, Engn Res Ctr Trop & Subtrop Aquat Ecol Engn, Guangzhou 510632, Peoples R China.; Jiang, T (通讯作者)，Yantai Univ, Sch Ocean, Yantai 264005, Peoples R China.	twzh@jnu.edu.cn; jiangtaojnu@163.com			Science & Technology Basic Resources Investigation Program of China [2018FY100200]; National Natural Science Foundation of China [42076141]	Science & Technology Basic Resources Investigation Program of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	Supported by the Science & Technology Basic Resources Investigation Program of China (No. 2018FY100200) and the National Natural Science Foundation of China (No. 42076141)	Balkis N, 2011, J MAR BIOL ASSOC UK, V91, P771, DOI 10.1017/S0025315410000081; 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Oceanol. Limnol.	NOV	2022	40	6			SI		2322	2342		10.1007/s00343-021-1200-0	http://dx.doi.org/10.1007/s00343-021-1200-0		OCT 2021	21	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	7N1SD					2025-03-11	WOS:000797760900001
J	Deng, YY; Li, FT; Hu, ZX; Yue, CX; Tang, YZ				Deng, Yunyan; Li, Fengting; Hu, Zhangxi; Yue, Caixia; Tang, Ying Zhong			Expression Patterns of the Heat Shock Protein 90 (Hsp90) Gene Suggest Its Possible Involvement in Maintaining the Dormancy of Dinoflagellate Resting Cysts	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES			English	Article						dinoflagellate; dormancy; environmental cDNA library; heat shock protein 90 (Hsp90); resting cysts; Scrippsiella trochoidea; temperature stress	SP-NOV; EVOLUTIONARY; TEMPERATURE; STRESS; GROWTH; TRANSCRIPTION; IRRADIANCE; SALINITY; COPPER; LIFE	Heat shock protein 90 (Hsp90) is a highly conserved molecular chaperone functioning in cellular structural folding and conformational integrity maintenance and thus plays vital roles in a variety of biological processes. However, many aspects of these functions and processes remain to be fully elucidated, particularly for non-model organisms. Dinoflagellates are a group of eukaryotes that are exceedingly important in primary production and are responsible for the most harmful algal blooms (HABs) in aquatic ecosystems. The success of dinoflagellates in dominating the plankton community is undoubtedly pertinent to their remarkable adaptive strategies, characteristic of resting cyst production and broad tolerance to stresses of temperature and others. Therefore, this study was conducted to examine the putative roles of Hsp90 in the acclimation to temperature stress and life stage alterations of dinoflagellates. Firstly, we isolated the full-length cDNA of an Hsp90 gene (StHsp90) via RACE from the cosmopolitan HAB species Scrippsiella trochoidea and tracked its transcriptions in response to varied scenarios via real-time qPCR. The results indicated that StHsp90 displayed significant mRNA augment patterns, escalating during 180-min treatments, when the cells were exposed to elevated and lowered temperatures. Secondly, we observed prominently elevated StHsp90 transcriptions in the cysts that were stored at the cold and dark conditions compared to those in newly formed resting cysts and vegetative cells. Finally, and perhaps most importantly, we identified 29 entries of Hsp90-encoding genes with complete coding regions from a dinoflagellate-specific environmental cDNA library generated from marine sediment assemblages. The observed active transcription of these genes in sediment-buried resting cysts was fully supported by the qPCR results for the cold-stored resting cysts of S. trochoidea. Hsp90s expressions in both laboratory-raised and field-collected cysts collectively highlighted the possible involvement and engagement of Hsp90 chaperones in the resting stage persistence of dinoflagellates.	[Deng, Yunyan; Li, Fengting; Hu, Zhangxi; Yue, Caixia; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Li, Fengting; Yue, Caixia] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China.	yunyandeng@qdio.ac.cn; lifengting@qdio.ac.cn; zhu@qdio.ac.cn; yuecaixia@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023	Hu, Zhangxi/0000-0002-4742-4973; Tang, Ying-Zhong/0000-0003-0446-3128; Deng, Yunyan/0000-0001-5967-3611	Key Deployment Project of the Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]; National Science Foundation of China [42176207]	Key Deployment Project of the Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC))	FundingThis research was funded by the Key Deployment Project of the Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences (Grant No. COMS2019Q09) and the National Science Foundation of China (Grant No. 42176207).	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OCT	2021	22	20							11054	10.3390/ijms222011054	http://dx.doi.org/10.3390/ijms222011054			18	Biochemistry & Molecular Biology; Chemistry, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Biochemistry & Molecular Biology; Chemistry	WT6QT	34681714	gold, Green Published			2025-03-11	WOS:000715988100001
J	Deng, YY; Li, FT; Hu, ZX; Yue, CX; Tang, YZ				Deng, Yunyan; Li, Fengting; Hu, Zhangxi; Yue, Caixia; Tang, Ying Zhong			The Implication Inferred from the Expression of Small Heat-Shock Protein Genes in Dinoflagellate Resting Cysts Buried in Marine Sediment	DIVERSITY-BASEL			English	Article						dinoflagellate; dormancy; environmental cDNA library; harmful algal blooms; marine sediment; resting cysts; resting stage persistence; small heat shock protein (sHsp)	SYMBIODINIUM-KAWAGUTII; STRESS; EVOLUTIONARY; CHAPERONES; DIAPAUSE	Dinoflagellates are unicellular eukaryotic microalgae, occupying pivotal niches in aquatic ecosystems with great ecological, biological, and economic significance. Small heat shock proteins (sHsps) are the most omnipresent, but the least conserved, family of molecular chaperones found in all domains of life. Although their common name (small Hsp) implies to exclusively stress their heat shock-responsive function, many sHsps in fact engage in a variety of physiological processes, from cell growth and proliferation to embryogenesis, development, differentiation, apoptosis, and even to human disease prevention. Recent years have greatly expanded our understanding of sHsps in higher plants; however, comprehensive study aiming to delineate the composition and expression pattern of dinoflagellate sHsp gene family has not yet been performed. In this study, we constructed dinoflagellate-specific environmental cDNA library from marine sediment and sequenced using the third-generation sequencing technique. Screening of sHsp genes from the library returned 13 entries with complete coding regions, which were considered to be transcriptionally activated in the natural community of dinoflagellate resting cysts. All the 13 dinoflagellate sHsps consisted of a solely characteristic alpha-crystallin domain, covering 88-123 amino acid residues with the typical A-X-X-X-N-G-V-L motif, flanked by variable N- and C-terminal extensions. Multiple alignment revealed considerable amino acid divergence (similar to 26.7% average similarity) among them. An unexpected close relationship was revealed between dinoflagellate and green algal sHsps in the phylogenetic tree, seemingly reflecting a close evolutionary relationship of these sHsps themselves. We confirmed that sHsp mRNAs are expressed during dormancy of the resting cyst assemblages of dinoflagellates that were buried in marine sediment, which raised the possibility that the sHsp expression is part of the machinery of maintaining the dormancy or/and the adaptation to ambient conditions of dinoflagellate resting cysts. Our results, although preliminary, gained an important glance on the universal presence of sHsps in dinoflagellates and their active expressions in the assemblage of resting cysts that were buried in the marine sediment. The essentiality of sHsps functioning in resting cysts necessitate more intensive and extensive investigations on all possible functions of Hsps in dinoflagellates, a group of protists with vital ecological and biological importance.	[Deng, Yunyan; Li, Fengting; Hu, Zhangxi; Yue, Caixia; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Li, Fengting; Yue, Caixia] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	yunyandeng@qdio.ac.cn; lifengting@qdio.ac.cn; zhu@qdio.ac.cn; yuecaixia@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023	Tang, Ying-Zhong/0000-0003-0446-3128; Hu, Zhangxi/0000-0002-4742-4973; Deng, Yunyan/0000-0001-5967-3611	Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]; National Science Foundation of China [41776125]	Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC))	FundingThis research was funded by the Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences (Grant No. COMS2019Q09) and the National Science Foundation of China (Grant No. 41776125).	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J	Liu, ML; Zheng, J; Krock, B; Ding, GM; MacKenzie, L; Smith, KF; Gu, HF				Liu, Minlu; Zheng, Jing; Krock, Bernd; Ding, Guangmao; MacKenzie, Lincoln; Smith, Kirsty F.; Gu, Haifeng			Dynamics of the Toxic Dinoflagellate <i>Alexandrium pacificum</i> in the Taiwan Strait and Its Linkages to Surrounding Populations	WATER			English	Article						harmful algal blooms; cysts; growth; paralytic shellfish toxins	TAMARENSE SPECIES COMPLEX; SHELLFISH POISONING TOXINS; RED TIDE DINOFLAGELLATE; GROUP IV; SPATIAL-DISTRIBUTION; COASTAL WATERS; RESTING CYSTS; DINOPHYCEAE; CATENELLA; BAY	The dinoflagellate Alexandrium pacificum can produce paralytic shellfish toxins and is mainly distributed in the Pacific. Blooms of A. pacificum have been frequently reported in offshore areas of the East China Sea, but not along the coast. To investigate the bloom dynamics of A. pacificum and their potential origins in the Taiwan Strait, we performed intensive sampling of both water and sediments from 2017 to 2020. Ellipsoidal cysts were identified as A. pacificum and enumerated based on microscopic observation. Their abundances were quite low but there was a maximum of 9.6 cysts cm(-3) in the sediment near the Minjiang River estuary in May 2020, consistent with the high cell abundance in the water column in this area. Cells of A. pacificum were examined using a quantitative polymerase chain reaction, and they appeared to be persistent in the water column across the seasons. High densities of A. pacificum (10(3) cells L-1) were observed near the Jiulongjiang and Minjiang River estuary in early May 2020, where high nutrients (dissolved inorganic nitrogen and phosphate), and relatively low temperatures (20-21 degrees C) were also recorded. Strains isolated from the East and South China Sea exhibited the highest division rate (0.63 and 0.93 divisions d(-1)) at 20 and 23 degrees C, respectively, but the strain from the Yellow Sea showed the highest division (0.40 divisions d(-1)) at 17-23 degrees C. Strains from the East and South China Sea shared similar toxin profiles dominated by the N-sulfocarbamoyl toxins C1/2, but the strain from the Yellow Sea predominantly produced the carbamoyl toxins GTX1/4 and no C1/2. Our results suggest that both cyst germination and persistent cells in the water column might contribute to the bloom formation in the Taiwan Strait. Our results also indicate that the East and South China Sea populations are connected genetically through similar toxin formation but separated from the Yellow Sea population geographically.	[Liu, Minlu; Zheng, Jing; Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Krock, Bernd] Alfred Wegener Inst Helmholtz Zentrum Polar & Mee, Handelshafen 12, D-27570 Bremerhaven, Germany; [Ding, Guangmao] Fishery Resources Monitoring Ctr Fujian Prov, Fuzhou 350003, Peoples R China; [MacKenzie, Lincoln; Smith, Kirsty F.] Cawthron Inst, 98 Halifax St East,Private Bag 2, Nelson 7042, New Zealand; [Gu, Haifeng] Minist Nat Resources, Key Lab Marine Ecol Conservat & Restorat, Xiamen 361005, Peoples R China	Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Cawthron Institute; Ministry of Natural Resources of the People's Republic of China	Gu, HF (通讯作者)，Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China.; Gu, HF (通讯作者)，Minist Nat Resources, Key Lab Marine Ecol Conservat & Restorat, Xiamen 361005, Peoples R China.	liuminlu@tio.org.cn; zhengjing@tio.org.cn; bernd.krock@awi.de; haner1982@126.com; lincoln.mackenzie@cawthron.org.nz; kirsty.smith@cawthron.org.nz; guhaifeng@tio.org.cn	Krock, Bernd/ABB-7541-2020; Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171	Scientific Research Foundation of Third Institute of Oceanography, MNR [2019018, 2019017]; National Key Research and Development Program of China [2019YFE0124700]	Scientific Research Foundation of Third Institute of Oceanography, MNR; National Key Research and Development Program of China(National Key Research & Development Program of China)	This project was supported by the Scientific Research Foundation of Third Institute of Oceanography, MNR (No. 2019018, 2019017) and the National Key Research and Development Program of China (No. 2019YFE0124700).	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J	Song, XY; Zhai, XY; Hao, S; Shang, LX; Deng, YY; Chai, ZY; Chen, JH; Hu, ZX; Tang, YZ				Song, Xiaoying; Zhai, Xinyu; Hao, Shuang; Shang, Lixia; Deng, Yunyan; Chai, Zhaoyang; Chen, Junhui; Hu, Zhangxi; Tang, Ying Zhong			Novel Non-paralytic Shellfish Toxin and Non-spirolide Toxicity to Finfish, Brine Shrimp, and Rotifer Observed in a Culture of the Dinoflagellate <i>Alexandrium insuetum</i> Isolated From the Coastal Water of China	FRONTIERS IN MARINE SCIENCE			English	Article						harmful algal blooms (HABs); Alexandrium insuetum; morphology; phylogeny; novel toxicity; fish kill	TAMARENSE SPECIES COMPLEX; GENUS ALEXANDRIUM; OSTENFELDII DINOPHYCEAE; PERUVIANUM BALECH; MENDIOLA BALECH; RESTING CYSTS; BOHAI SEA; PHYLOGENY; IDENTIFICATION; PROFILE	The genus Alexandrium is one of the major harmful algal blooms (HABs)-forming dinoflagellate group and at least half of similar to 40 described species have been reported to produce paralytic shellfish toxins (PSTs). The potentially harmful species Alexandrium insuetum has been reported from many countries of Asia and Europe, and to have paralytic shellfish poisoning toxicity, but no mortality of marine animals was observed during its bloom. Therefore, it is ecologically important to characterize the possible toxicity and toxins of this organism. In this study, based on the establishment of two clonal cultures through cyst germination collected from the Yellow Sea, we identified A. insuetum from China as the first record via light microscopy (LM) and scanning electron microscopy (SEM) observations and phylogenetic analyses. The cultures of A. insuetum were further observed to be toxic to finfish and zooplankton and deleterious to rotifer eggs via laboratory bioassays. The exposure bioassays using rotifer (Brachionus plicatilis), brine shrimp (Artemia salina), and larval finfish (Oryzias melastigma) demonstrated that A. insuetum caused significant lethal effects on finfish and zooplankton species. Rotifer bioassays using cell-free culture medium, heat-treated cultures, and water, methanol, and trichloromethane extracts of algal cells revealed that A. insuetum produced heat-labile, water-soluble toxin(s) that could be excreted from A. insuetum cells and steadily accumulated in the medium during the growth phases. Hatching success of rotifer eggs was also found to be seriously affected by the exposure to A. insuetum. Importantly, ultra-high performance liquid chromatography-tandem mass spectrometry [UPLC (or LC)-MS-MS] analyses suggest the above-described toxicity of A. insuetum was caused by neither PSTs nor spiroimines (13-desmethyl spirolide C and gymnodimine). Collectively, our findings demonstrated the novel toxicity to finfish and zooplankton in A. insuetum, which is ecologically important in not only possibly contributing to population dynamics and even the formation of HABs of the species, but also affecting the on-the-spot survival and the reproduction potency of marine animals. The present work is believed to set a cornerstone for the monitoring and risk assessment of the species along the coastal waters of China and for understanding the general ecology of A. insuetum.	[Song, Xiaoying; Zhai, Xinyu; Shang, Lixia; Deng, Yunyan; Chai, Zhaoyang; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Song, Xiaoying; Shang, Lixia; Deng, Yunyan; Chai, Zhaoyang; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Song, Xiaoying; Zhai, Xinyu] Univ Chinese Acad Sci, Beijing, Peoples R China; [Song, Xiaoying; Shang, Lixia; Deng, Yunyan; Chai, Zhaoyang; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China; [Hao, Shuang; Chen, Junhui] Minist Nat Resources, Inst Oceanog 1, Key Lab Sci & Engn Marine Ecol & Environm, Qingdao, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Ministry of Natural Resources of the People's Republic of China; First Institute of Oceanography, Ministry of Natural Resources	Hu, ZX; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Hu, ZX; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Hu, ZX; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China.	zhu@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Chai, Zhaoyang/F-7485-2017; Zhang, Xing/ACQ-5035-2022		Science & Technology Basic Resources Investigation Program of China [2018FY100200]; National Science Foundation of China [41976134, 41776125]; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]	Science & Technology Basic Resources Investigation Program of China; National Science Foundation of China(National Natural Science Foundation of China (NSFC)); Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences	This work was financially supported by the Science & Technology Basic Resources Investigation Program of China (2018FY100200), the National Science Foundation of China (Nos. 41976134 and 41776125), and the Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences (Grant No. COMS2019Q09).	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Mar. Sci.	SEP 28	2021	8								735752	10.3389/fmars.2021.735752	http://dx.doi.org/10.3389/fmars.2021.735752			17	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	WF1JR		gold			2025-03-11	WOS:000706070100001
J	Hu, ZX; Xu, N; Gu, HF; Chai, ZY; Takahashi, K; Li, Z; Deng, YY; Iwataki, M; Matsuoka, K; Tang, YZ				Hu, Zhangxi; Xu, Ning; Gu, Haifeng; Chai, Zhaoyang; Takahashi, Kazuya; Li, Zhun; Deng, Yunyan; Iwataki, Mitsunori; Matsuoka, Kazumi; Tang, Ying Zhong			Morpho-molecular description of a new HAB species, <i>Pseudocochlodinium profundisulcus</i> gen. et sp. nov., and its LSU rRNA gene based genetic diversity and geographical distribution	HARMFUL ALGAE			English	Article						Apical structure complex; Cochlodinium geminatum; Geographical distribution; LSU rRNA gene; Pseudocochlodinium profundisulcus; Resting cyst; SSU rRNA gene	HARMFUL ALGAL BLOOMS; PEARL RIVER ESTUARY; UNARMORED DINOFLAGELLATE; DINOPHYCEAE; PHYTOPLANKTON; GYMNODINIALES; SEA; TEMPERATURE; PHYLOGENY; DYNAMICS	Harmful algal blooms (HABs) caused by an unknown dinoflagellate species have frequently occurred in the Pearl River Estuary, China Since 2006. These blooms were associated with severe water discoloration and economic losses, ranging from several km(2) to 300 km(2) with the maximum recorded cell density being 2.77 x 10(7) cells.L-1. This unknown dinoflagellate species was initially identified as Cochlodinium geminatum and subsequently reclassified as Polykrikos geminatus. However, after reviewing the original descriptions for Cochlodinium geminatum sensu Schutt (1895) and the genus Polykrikos, we considered this species is incongruent with their original descriptions. Further morphological examinations and particularly phylogenetic analyses based on the SSU and partial LSU rRNA genes of isolates and resting cysts from China and Japan prompted us to consider it a new species of a new genus. This new species was proposed to be Pseudocochlodinium profundisulcus gen. et sp. nov., based on its open comma-shaped apical structure complex (ASC), cingulum encircling the cell less than one and a half turns, a deep sulcus with a torsion of a half turn, either single cell or cell chain consisting of two cells with the same number of nuclei and zooids, the resting cyst bearing lobed ornaments, and the evolutionary distances from Polykrikos (and others) on the phylogenetic trees constructed using the concatenated SSU and partial LSU rRNA gene sequences. Metabarcoding investigation of surface sediment samples collected in China revealed that the species to be widely present along the entire Chinese coast with the highest abundance in the South China Sea. Further re-analysis of the Tara Oceans metabarcoding dataset targeting the SSU rRNA gene V9 domain suggested a global distribution of this new genus. Phylogenetic analyses on 46 OTUs (average length: similar to 552 bases) of its LSU rRNA gene sequences (mainly D1-D2 domains) obtained from surface sediment samples revealed intraspecific genetic diversity of this species. Interestingly, based on the different distributions and the abundance of these OTUs along the coast of China, this species appeared to have expanded its distribution from the South China Sea to the northern Yellow Sea, or preferred a warm water habitat. We consider that the present work improves the taxonomy and provides important insights into the biogeography of Pseudocochlodinium profundisulcus.	[Hu, Zhangxi; Chai, Zhaoyang; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Lab Marine Ecol & Environm Sci, Qingdao Natl Lab Marine Sci & Technol, Qingdao 266237, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Xu, Ning] Jinan Univ, Inst Hydrobiol, Guangzhou 510632, Peoples R China; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Takahashi, Kazuya; Iwataki, Mitsunori] Univ Tokyo, Grad Sch Agr & Life Sci, Tokyo 1138657, Japan; [Li, Zhun] Korea Res Inst Biosci & Biotechnol, Biol Resource Ctr, Korean Collect Type Cultures KCTC, Jeongeup 56212, South Korea; [Matsuoka, Kazumi] Nagasaki Univ, Inst East China Sea Res, Nagasaki 8512213, Japan	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; Jinan University; Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; University of Tokyo; Korea Research Institute of Bioscience & Biotechnology (KRIBB); Nagasaki University	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Iwataki, M (通讯作者)，Univ Tokyo, Grad Sch Agr & Life Sci, Tokyo 1138657, Japan.; Matsuoka, K (通讯作者)，Nagasaki Univ, Inst East China Sea Res, Nagasaki 8512213, Japan.	iwataki@anesc.u-tokyo.ac.jp; kazu-mtk@nagasaki-u.ac.jp; yingzhong.tang@qdio.ac.cn	Chai, Zhaoyang/F-7485-2017; ZHANG, hui jie/HTN-1690-2023; LI, ZHUN/GLT-3478-2022; Iwataki, Mitsunori/H-9640-2019; Gu, Haifeng/ADN-4528-2022; Takahashi, Kazuya/LCD-6164-2024	Iwataki, Mitsunori/0000-0002-5844-2800; Hu, Zhangxi/0000-0002-4742-4973; Gu, Haifeng/0000-0002-2350-9171; Takahashi, Kazuya/0000-0003-1349-1120; LI, ZHUN/0000-0001-8961-9966	Science & Technology Basic Resources Investigation Program of China [2018FY100200]; National Natural Science Founda-tion of China [41976134, 41576159, 41776125]	Science & Technology Basic Resources Investigation Program of China; National Natural Science Founda-tion of China(National Natural Science Foundation of China (NSFC))	We are highly grateful of the two anonymous reviewers for theirpatience, insights, critical comments and generous suggestions, which helped greatly the improvement of the manuscript. We also thank Pro-fessor Nansheng Chen for his valuable help in the language. We thank Dr. Yuanyuan Sun from CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences for her assistance in SEM sample preparation. This work was financially sup-ported by the Science & Technology Basic Resources Investigation Program of China (2018FY100200) , National Natural Science Founda-tion of China (Grant Nos. 41976134, 41576159, 41776125) .	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J	Meyvisch, P; Gurdebeke, PR; Vrielinck, H; Mertens, KN; Versteegh, G; Louwye, S				Meyvisch, Pjotr; Gurdebeke, Pieter R.; Vrielinck, Henk; Mertens, Kenneth Neil; Versteegh, Gerard; Louwye, Stephen			Attenuated Total Reflection (ATR) Micro-Fourier Transform Infrared (Micro-FT-IR) Spectroscopy to Enhance Repeatability and Reproducibility of Spectra Derived from Single Specimen Organic-Walled Dinoflagellate Cysts	APPLIED SPECTROSCOPY			English	Article						Dinocysts; dinoflagellates; attenuated total reflection; ATR; Fourier transform infrared spectroscopy; FT-IR; micropaleontology; chemotaxonomy; chemometrics; methodology	MULTIPLICATIVE SIGNAL CORRECTION; TRANSFLECTION-MODE; VIBRATIONAL SPECTROSCOPY; SODIUM POLYTUNGSTATE; CHEMICAL-COMPOSITION; INTERNAL-REFLECTION; RESTING CYSTS; MIE RIPPLES; MICROSPECTROSCOPY; TRANSMISSION	The chemical composition of recent and fossil organic-walled dinoflagellate cyst walls and its diversity is poorly understood and analyses on single microscopic specimens are rare. A series of infrared spectroscopic experiments resulted in the proposition of a standardized attenuated total reflection micro-Fourier transform infrared-based method that allows the collection of robust data sets consisting of spectra from individual dinocysts. These data sets are largely devoid of nonchemical artifacts inherent to other infrared spectrochemical methods, which have typically been used to study similar specimens in the past. The influence of sample preparation, specimen morphology and size and spectral data processing steps is also assessed within this methodological framework. As a result, several guidelines are proposed which facilitate the collection and qualitative interpretation of highly reproducible and repeatable spectrochemical data. These, in turn, pave the way for a systematic exploration of dinocyst chemistry and its assessment as a chemotaxonomical tool or proxy.	[Meyvisch, Pjotr; Gurdebeke, Pieter R.; Louwye, Stephen] Univ Ghent, Dept Geol, Ghent, Belgium; [Vrielinck, Henk] Univ Ghent, Dept Solid State Sci, Ghent, Belgium; [Mertens, Kenneth Neil] LITTORAL, IFREMER, Concarneau, France; [Versteegh, Gerard] Alfred Wegener Inst, Marine Biochem Grp, Bremerhaven, Germany	Ghent University; Ghent University; Ifremer; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Meyvisch, P (通讯作者)，Univ Ghent, Krijgslaan 281 Bldg S8, B-9000 Ghent, East Flanders, Belgium.	pjotr.meyvisch@ugent.be	Gurdebeke, Pieter/AAY-7059-2020; Mertens, Kenneth/AAO-9566-2020; Meyvisch, Pjotr/ABB-1527-2021; Vrielinck, Henk/M-8367-2016; Louwye, Stephen/D-3856-2012; Versteegh, Gerard J.M./H-2119-2011; Mertens, Kenneth/C-3386-2015	Louwye, Stephen/0000-0003-4814-4313; Versteegh, Gerard J.M./0000-0002-9320-3776; Vrielinck, Henk/0000-0003-4861-9630; Gurdebeke, Pieter R./0000-0003-1425-8515; Meyvisch, Pjotr/0000-0002-1270-2152; Mertens, Kenneth/0000-0003-2005-9483	Hercules Foundation (FWO, Flanders) [AUGE/13/16]	Hercules Foundation (FWO, Flanders)	The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This work was supported by the Hercules Foundation (FWO, Flanders) (FT-IMAGER project-AUGE/13/16).	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FEB	2022	76	2					235	254	00037028211041172	10.1177/00037028211041172	http://dx.doi.org/10.1177/00037028211041172		SEP 2021	20	Instruments & Instrumentation; Spectroscopy	Science Citation Index Expanded (SCI-EXPANDED)	Instruments & Instrumentation; Spectroscopy	YX8AO	34494488	Green Published, Green Submitted			2025-03-11	WOS:000694677400001
J	Tang, YZ; Gu, HF; Wang, ZH; Liu, DY; Wang, Y; Lu, DD; Hu, ZX; Deng, YY; Shang, LX; Qi, YZ				Tang, Ying Zhong; Gu, Haifeng; Wang, Zhaohui; Liu, Dongyan; Wang, Yan; Lu, Douding; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Qi, Yuzao			Exploration of resting cysts (stages) and their relevance for possibly HABs-causing species in China	HARMFUL ALGAE			English	Article						Dinoflagellates; Life history (life cycle); Resting cysts; Resting stage cell (RSC); Encystment; Excystment; Marine sediment	HARMFUL ALGAL BLOOMS; DINOFLAGELLATE CYSTS; SP-NOV; PHYLOGENETIC POSITIONS; THECA RELATIONSHIP; YELLOW SEA; SURFACE SEDIMENTS; PHEOPOLYKRIKOS-HARTMANNII; SPINIFERA PERIDINIALES; DINOPHYCEAE	The studies on the species diversity, distribution, environmental implications, and molecular basis of resting cysts (stages) of dinoflagellates and a few species of other groups conducted in China during the last three decades are reviewed. The major achievements are summarized as the following five aspects: 1) The continual efforts in detecting the species diversity of resting cysts (spores) in dinoflagellates and other classes using either morphological or molecular approaches, or both, in the four seas of China, which led to identifications of 106 species of dinoflagellate resting cysts and 4 species of resting stages from other groups of microalgae, with a total of 64 species of dinoflagellate cysts and the resting stage of the brown tide-causing Aureococcus anophagefferens being unequivocally identified via molecular approaches from the sediments of Chinese coastal waters; 2) The well-known toxic and HABs-causing dinoflagellates Karenia mikimotoi, Karlodinium veneficum, Akashiwo sanguinea and the pelagophyte A. anophagefferens were proven to be resting cyst (stage) producers via laboratory studies on their life cycles and field detections of resting cysts (resting stage cells). And, via germination experiment and subsequent characterization of vegetative cells, numerous dinoflagellate species that had never been described or found to form cysts were discovered and characterized; 3) The distributions of the resting cysts of Alexandrium catenella, A. pacificum, Gymnodinium catenatum, K. mikimotoi, K. veneficum and Azadinium poporum and the resting stage cells of A. anophagefferens were morphologically and molecularly mapped in all four seas of China, with A. anophagefferens proven to have been present in the Bohai Sea for at least 1,500 years; 4) Obtaining important insights into the 'indicator' values of the dinoflagellate cyst assemblages in sediment cores for tracking eutrophication, environmental pollution and other anthropological influences in coastal waters; 5) Studies on the cyst-pertinent processes and genetic basis (transcriptomics together with physiological and chemical measurements) of resting cyst dormancy not only revealed the regulating patterns of some environmental factors in cyst formation and germination, but also identified many characteristically active or inactive metabolic pathways, differentially expressed genes, and the possibly vital regulating function of the phytohormone abscisic acid and a group of molecular chaperones in resting cysts. We also identified seven issues and three themes that should be addressed and explored by Chinese scientists working in the area in the future.	[Tang, Ying Zhong; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Tang, Ying Zhong; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China; [Tang, Ying Zhong; Hu, Zhangxi; Deng, Yunyan; Shang, Lixia] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Wang, Zhaohui] Jinan Univ, Coll Life Sci & Technol, Inst Hydrol, Guangzhou 510632, Guangdong, Peoples R China; [Liu, Dongyan] East China Normal Univ, State Key Lab Estuarine & Coastal Res, Shanghai 200241, Peoples R China; [Wang, Yan; Qi, Yuzao] Jinan Univ, Coll Life Sci & Technol, Res Ctr Red Tide & Marine Biol, Guangzhou 510632, Guangdong, Peoples R China; [Lu, Douding] Minist Nat Resources, Inst Oceanog 2, Key Lab Marine Ecosyst & Biogeochem, Hangzhou 310012, Zhejiang, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; Jinan University; East China Normal University; Jinan University; Ministry of Natural Resources of the People's Republic of China; Second Institute of Oceanography, Ministry of Natural Resources	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	Gu, Haifeng/ADN-4528-2022; ZHANG, hui jie/HTN-1690-2023		National Key R&D Program of China [2017YFC1404300]; Science & Technology Basic Resources Investigation Program of China [2018FY100200]; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]; National Science Foundation of China [41976134, 41776125]	National Key R&D Program of China; Science & Technology Basic Resources Investigation Program of China; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC))	We are grateful of the help of Ms. Caixia Yue, Xiaohan Liu, Fengting Li, and Xiaoying Song from the Institute of Oceanology, Chinese Academy of Sciences. This work was financially supported by the National Key R&D Program of China (No. 2017YFC1404300) , the Science & Technology Basic Resources Investigation Program of China (No. 2018FY100200) , the Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences (No. COMS2019Q09) , and the National Science Foundation of China (Nos. 41976134, 41776125) .	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J	Wang, ZH; Wang, CF; Wang, MT; Li, WG; Zhong, WC; Liu, L; Jiang, T				Wang, Zhaohui; Wang, Chaofan; Wang, Maoting; Li, Weiguo; Zhong, Wencong; Liu, Lei; Jiang, Tao			Diversity and community structure of eukaryotic microalgae in surface sediments in the central Bohai Sea, China, based on a metabarcoding approach	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						microalgae; dinoflagellate cysts; high throughput sequencing; marine sediment; the Bohai Sea; resting stages	HARMFUL ALGAL BLOOMS; MOLECULAR CHARACTERIZATION; RESTING STAGES; PHYTOPLANKTON COMMUNITY; AZADINIUM-POPORUM; COASTAL WATERS; HEAVY-METALS; DINOPHYCEAE; MORPHOLOGY; PHYLOGENY	Sediment samples were collected at 17 stations in the central Bohai Sea, China, and the diversity and community structure of eukaryotic microalgae were assessed by metabarcoding the V4 region of 18S rDNA. A total of 930 operational taxonomic units (OTUs) were detected for microeukaryotes, including 98 algal OTUs. The algal communities comprised 42 genera belonging to 19 classes of six phyla, and they were dominated by chrysophytes and dinoflagellates. Dinoflagellates were also the most diverse microalgal group. The nano-sized dinoflagellates Biecheleria halophila and Azadinium trinitatum occurred abundantly in the study area; however, they have not been reported previously, as they may be overlooked or misidentified in light microscopy. Many pico-sized chlorophytes were detected in the sediment samples. Sixteen of the detected OTUs were assigned to potentially harmful and/or bloom-forming microalgae, suggesting some potential risks of harmful algal blooms in the central Bohai Sea. The capacity of metabarcoding to detect morphologically cryptic and small species makes this method a sufficiently sensitive means of detection for assessing eukaryotic microalgae in sediments.	[Wang, Zhaohui; Wang, Chaofan; Wang, Maoting; Li, Weiguo; Zhong, Wencong; Liu, Lei] Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China; [Wang, Zhaohui] Minist Educ, Engn Res Ctr Trop & Subtrop Aquat Ecol Engn, Guangzhou 510632, Peoples R China; [Jiang, Tao] Yantai Univ, Sch Ocean, Yantai 264005, Peoples R China	Jinan University; Yantai University	Wang, ZH (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Peoples R China.; Wang, ZH (通讯作者)，Minist Educ, Engn Res Ctr Trop & Subtrop Aquat Ecol Engn, Guangzhou 510632, Peoples R China.; Jiang, T (通讯作者)，Yantai Univ, Sch Ocean, Yantai 264005, Peoples R China.	twzh@jnu.edu.cn; jiangtaophy@163.com			Science & Technology Basic Resources Investigation Program of China [2018FY100200]; National Natural Science Foundation of China [42076141]	Science & Technology Basic Resources Investigation Program of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	Supported by the Science & Technology Basic Resources Investigation Program of China (No. 2018FY100200) and the National Natural Science Foundation of China (No. 42076141)	Akselman R, 2012, HARMFUL ALGAE, V19, P30, DOI 10.1016/j.hal.2012.05.004; 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Yu GC, 2017, METHODS ECOL EVOL, V8, P28, DOI 10.1111/2041-210X.12628; Zhu AM, 2020, MAR POLLUT BULL, V153, DOI 10.1016/j.marpolbul.2020.110901	75	0	0	6	40	SCIENCE PRESS	BEIJING	16 DONGHUANGCHENGGEN NORTH ST, Building 5, Room 411, BEIJING, 100009, PEOPLES R CHINA	2096-5508	2523-3521		J OCEANOL LIMNOL	J. Oceanol. Limnol.	NOV	2022	40	6			SI		2277	2291		10.1007/s00343-021-0481-7	http://dx.doi.org/10.1007/s00343-021-0481-7		AUG 2021	15	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	7N1SD					2025-03-11	WOS:000797761100001
J	García-Moreiras, I; Oliveira, A; Santos, A; Oliveira, PB; Amorim, A				Garcia-Moreiras, Iria; Oliveira, Anabela; Santos, Ana, I; Oliveira, Paulo B.; Amorim, Ana			Environmental Factors Affecting Spatial Dinoflagellate Cyst Distribution in Surface Sediments Off Aveiro-Figueira da Foz (Atlantic Iberian Margin)	FRONTIERS IN MARINE SCIENCE			English	Article						dinoflagellate cysts; sediments; spatial distribution; environmental gradients; coastal ecosystems; HABs; Atlantic Iberian margin	HARMFUL ALGAL BLOOMS; RIA-DE-VIGO; GYMNODINIUM-CATENATUM; UPWELLING SYSTEMS; PHYSICAL OCEANOGRAPHY; MARINE-SEDIMENTS; NW IBERIA; PHYTOPLANKTON; DYNAMICS; COAST	Resting cysts of planktonic dinoflagellates, once produced, sink to the seabed where they can remain viable for a long time. These cysts have important ecological roles, such as acting as the inoculum for the development of planktonic populations. Moreover, dinoflagellate cyst records from depth sediment cores are broadly used as a proxy to infer past environmental conditions. In this study, the main objective was to obtain information on the relationships between the spatial distribution of modern dinoflagellate cysts and present-day hydrography in the NW Iberian shelf. Cyst assemblages were analyzed in 51 surface sediment samples with varying grain sizes, collected at different water depths, following nine transects perpendicular to the coast, between Aveiro and Figueira da Foz (Atlantic Iberian margin). Multivariate statistical analyses revealed marked land-sea and latitudinal gradients in the distribution of cysts, and helped investigate how environmental factors [water depth, grain size, sea-surface temperature (SST), sea-surface salinity (SSS), bottom temperature (BTT) and surface chlorophyll-a concentration (CHL)] influence modern dinoflagellate cyst composition and abundances. Three main ecological signals were identified in the modern dinoflagellate cyst assemblages: (1) the heterotroph signal as the main upwelling signal; (2) the dominance of P. reticulatum and L. polyedra signal, indicative of warm stratified conditions, possibly reflecting transitional environments between more active inshore upwelling and warmer offshore waters; and (3) the G. catenatum signal for the presence of mid-shelf upwelling fronts. The almost absence of viable cysts of the toxic and potentially toxic species G. catenatum L. polyedra and P. reticulatum suggests that in the study area, for these species, there is no build-up of significant cyst beds and thus planktonic populations must depend on other seeding processes. These results are the first detailed modern distribution of dinoflagellate cysts in the NW Iberian Atlantic margin (off Portugal), and show a good correspondence with hydrographic features of summer upwelling season in the study area, meaning that they are reflecting water column characteristics and therefore may be used as supporting evidence for the interpretation of stratigraphic cyst records and reconstruction of past marine ecosystems in W Iberia.</p>	[Garcia-Moreiras, Iria] Univ Vigo, Basan Grp, Ctr Invest Marina CIM, Dept Biol Vexetal & Ciencias Solo,Fac Ciencias, Vigo, Spain; [Oliveira, Anabela; Santos, Ana, I] Inst Hidrog IH, Marine Geol Div, Lisbon, Portugal; [Santos, Ana, I] Univ Lisbon, Inst Dom Luiz, Fac Ciencias, Lisbon, Portugal; [Oliveira, Paulo B.] Inst Portugues Mar & Atmosfera IPMA, Alges, Portugal; [Amorim, Ana] Univ Lisbon, Dept Biol Vegetal, Fac Ciencias, Lisbon, Portugal; [Amorim, Ana] Univ Lisbon, Ctr Ciencias Mar & Ambiente MARE, Fac Ciencias, Lisbon, Portugal	Universidade de Vigo; Universidade de Lisboa; Instituto Portugues do Mar e da Atmosfera; Universidade de Lisboa; Universidade de Lisboa	García-Moreiras, I (通讯作者)，Univ Vigo, Basan Grp, Ctr Invest Marina CIM, Dept Biol Vexetal & Ciencias Solo,Fac Ciencias, Vigo, Spain.	iriagamo@uvigo.es	Oliveira, Anabela/L-8373-2013; Henriques, Sofia/B-1690-2012; GARCIA-MOREIRAS, IRIA/H-4627-2015; Amorim, Ana/AAA-2615-2020	GARCIA-MOREIRAS, IRIA/0000-0001-8713-0374; Amorim, Ana/0000-0002-9612-4280; Oliveira, Anabela/0000-0001-5098-3939; Oliveira, Paulo/0000-0001-6838-7377	EU ERDF funds, within the PT2020 Partnership Agreement [LISBOA01-0145-FEDER-031265]; EU ERDF funds, within Compete 2020 [LISBOA01-0145-FEDER-031265]; Fundacao para a Ciencia e Tecnologia, I.P.(FCT, I.P.) [UIDB/04292/2020]; AQUIMAR project MAR2020 [MAR-02.01.01-FEAMP-017]; European Union's Horizon 2020 Research and Innovation Programme [810139]; Xunta de Galicia, Spain [ED481B-2019-074]	EU ERDF funds, within the PT2020 Partnership Agreement; EU ERDF funds, within Compete 2020; Fundacao para a Ciencia e Tecnologia, I.P.(FCT, I.P.)(Fundacao para a Ciencia e a Tecnologia (FCT)); AQUIMAR project MAR2020; European Union's Horizon 2020 Research and Innovation Programme(Horizon 2020); Xunta de Galicia, Spain(Xunta de Galicia)	This work was a contribution to HABWAVE project LISBOA01-0145-FEDER-031265, co-funded by EU ERDF funds, within the PT2020 Partnership Agreement and Compete 2020, and national funds through Fundacao para a Ciencia e Tecnologia, I.P.(FCT, I.P.) and FCT, I.P. under the project UIDB/04292/2020, and also to AQUIMAR project MAR2020 No. MAR-02.01.01-FEAMP-017. This work was also supported by funding from the European Union's Horizon 2020 Research and Innovation Programme under grant agreement N 810139: Project Portugal Twinning for Innovation and Excellence in Marine Science and Earth Observation - PORTWIMS. IG-M was supported by a postdoctoral fellowship from Xunta de Galicia, Spain (ref. ED481B-2019-074, 2019).	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AUG 18	2021	8								699483	10.3389/fmars.2021.699483	http://dx.doi.org/10.3389/fmars.2021.699483			21	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	UL5VK		gold			2025-03-11	WOS:000692718700001
J	Choi, JM; Jung, JH; Kim, KH; Coats, DW; Kim, YO				Choi, Jung Min; Jung, Jae Ho; Kim, Ki Hong; Coats, D. Wayne; Kim, Young Ok			A Novel Parasitic, Syndinean Dinoflagellate <i>Euduboscquella triangula</i> Infecting the Tintinnid <i>Helicostomella longa</i>	FRONTIERS IN MARINE SCIENCE			English	Article						Euduboscquella; Helicostomella; marine parasite; syndinean dinoflagellate; tintinnid	N. SP DINOFLAGELLATA; INTRACELLULAR PARASITE; DUBOSCQUELLA-CACHONI; MOLECULAR PHYLOGENY; CILIATE; MORPHOLOGY; DIVERSITY; SEA	A tintinnid species, Helicostomella longa, infected by the parasitic dinoflagellate Euduboscquela triangula n. sp. was discovered from the southern coast of Korea in August of 2015 and 2016. Parasite morphology and development were analyzed by observation of live cells and protargol-stained specimens. The parasite was determined to be a new species in the genus Euduboscquella based on morphological and molecular data. A representative sequence of the novel species clustered in Euduboscquela group I. The morphological and developmental features of E. triangula were distinguished from those of its congeners by: (1) numerous shallow and intertwining grooves on an inconspicuous shield; (2) sporocytes initially forming a short chain, but separating after the second or third division regardless of spore type; (3) production of motile mushroom-shaped dinospores, non-motile spherical spores, and non-motile triangular spores. Dinospores were formed by ca. 28% of infections, while both non motile spherical and triangular spores occurred at a frequency of ca. 36%. All spore types showed completely identical 18S rDNA sequences. Parasite prevalence was 15.5 and 8.3% on 17 and 24 August of 2015, respectively, with infection intensity on both dates being 1.3.	[Choi, Jung Min; Kim, Young Ok] Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan, South Korea; [Choi, Jung Min; Kim, Ki Hong] Pukyong Natl Univ, Dept Aquat Life Med, Busan, South Korea; [Jung, Jae Ho] Gangneung Wonju Natl Univ, Dept Bobgy, Kangnung, South Korea; [Coats, D. Wayne] Smithsonian Environm Res Ctr, POB 28, Edgewater, MD 21037 USA	Korea Institute of Ocean Science & Technology (KIOST); Pukyong National University; Gangneung-Wonju National University; Smithsonian Institution; Smithsonian Environmental Research Center	Kim, YO (通讯作者)，Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan, South Korea.	yokim@kiost.ac.kr	KIM, YOUNG JIN/E-9374-2011; Jung, Jae-Ho/L-2849-2016; Jung, Jae-Ho/G-2084-2011	Jung, Jae-Ho/0000-0001-5497-8678; Coats, D Wayne/0000-0002-0636-189X	Korean Institute of Ocean Science and Technology (KIOST) [PE99962]	Korean Institute of Ocean Science and Technology (KIOST)	This research was supported by Korean Institute of Ocean Science and Technology (KIOST) projects "Effect on ciliate plankton population of micro-parasite infection" (PE99962).	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AUG 12	2021	8								720424	10.3389/fmars.2021.720424	http://dx.doi.org/10.3389/fmars.2021.720424			14	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	UB9QC		gold			2025-03-11	WOS:000686171000001
J	Pacheco, JP; Frizzera, CI; Goyenola, G; de-Mello, FT; Fosalba, C; Baattrup-Pedersen, A; Meerhoff, M; Jeppesen, E				Pacheco, Juan Pablo; Iglesias Frizzera, Carlos; Goyenola, Guillermo; Teixeira de-Mello, Franco; Fosalba, Claudia; Baattrup-Pedersen, Annette; Meerhoff, Mariana; Jeppesen, Erik			Invasion of <i>Ceratium furcoides</i> in subtropical lakes in Uruguay: Environmental drivers and fish kill record during its bloom	BIOLOGICAL INVASIONS			English	Article						Phytoplankton; Dinoflagellate bloom; Prochilodus lineatus; Eutrophication; Massive fish mortality	LEVANDER LANGHANS 1925; DINOFLAGELLATE CERATIUM; 1ST RECORD; SHALLOW-LAKE; WATER; PHYTOPLANKTON; RESERVOIR; HIRUNDINELLA; DINOPHYCEAE; STATE	The invasive freshwater dinoflagellate Ceratium furcoides is extending its distribution in South America with increasing environmental impacts associated with its bloom. We here report two events related to C. furcoides distribution expansion in Uruguay: (1) the main environmental drivers (physical and chemical factors, extreme wind events and zooplankton composition) of the first appearance and bloom of C. furcoides in 2012 in a subtropical eutrophic shallow lake (Lake Blanca, Uruguay); and (2) a fish kill event of Prochilodus lineatus observed during a bloom of C. furcoides in 2016 in a deep eutrophic lake (Puente de las Americas, Uruguay). The bloom of C. furcoides in Lake Blanca started in spring 2012 (December) after a clear water period with high phytoplankton species replacement after a cyanobacterial bloom of Raphidiopsis raciborskii. Extreme wind during this period may have initiated the bloom of C. furcoides by enhanced cysts resuspension from the sediments. High nutrient availability and low zooplankton grazing, further allowed C. furcoides to expand and reach over 96% of the phytoplankton biomass. In Lake Puente de las Americas, we registered the fish kill of the large-sized benthic Prochilodus lineatus during a bloom of C. furcoides. This bloom caused the oxygen depletion in the hypolimnion and the gills from these fish exhibited massive accumulations of C. furcoides cells compared to the ones collected in non-bloom conditions. Concurring to other studies our results suggest that the C. furcoides bloom likely caused the fish kill of P. lineatus by asphyxia. Our study is the earliest register of a bloom of C. furcoides in Uruguay (in 2012) and discusses the potential environmental effects of its bloom in subtropical lakes.	[Pacheco, Juan Pablo; Baattrup-Pedersen, Annette; Meerhoff, Mariana; Jeppesen, Erik] Aarhus Univ, Dept Biosci, DK-8600 Silkeborg, Denmark; [Pacheco, Juan Pablo; Jeppesen, Erik] Sino Danish Ctr Educ & Res SDC, Beijing 100049, Peoples R China; [Pacheco, Juan Pablo] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Pacheco, Juan Pablo; Iglesias Frizzera, Carlos; Goyenola, Guillermo; Teixeira de-Mello, Franco; Fosalba, Claudia; Meerhoff, Mariana] CURE Univ Republ, Dept Ecol & Gest Ambiental, Maldonado 20000, Uruguay; [Jeppesen, Erik] Middle East Tech Univ, Limnol Lab, Dept Biol Sci, Ankara, Turkey; [Jeppesen, Erik] Middle East Tech Univ, Ctr Ecosyst Res & Implementat, Ankara, Turkey; [Jeppesen, Erik] Middle East Tech Univ, Inst Marine Sci, Mersin, Turkey	Aarhus University; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Middle East Technical University; Middle East Technical University; Middle East Technical University	Pacheco, JP (通讯作者)，Aarhus Univ, Dept Biosci, DK-8600 Silkeborg, Denmark.	jp@cure.edu.uy	Jeppesen, Erik/O-2667-2019; Baattrup-Pedersen, Annette/HHN-0551-2022; Goyenola, Guillermo/AAI-6041-2020; Jeppesen, Erik/A-4463-2012; Teixeira de Mello, Franco/AAA-4869-2019; Baattrup-Pedersen, Annette/J-3285-2013	Pacheco Esnal, Juan Pablo/0000-0002-8100-2635; Jeppesen, Erik/0000-0002-0542-369X; Teixeira de Mello, Franco/0000-0003-4904-6985; Baattrup-Pedersen, Annette/0000-0002-3118-344X; Iglesias, Carlos/0000-0002-4125-3704	Aarhus University, Sino-Danish Center; University of the Chinese Academy of Sciences; University of the Republic, Uruguay; TUBITAK [118C250]; project ANII-FCE [2009-2749]	Aarhus University, Sino-Danish Center; University of the Chinese Academy of Sciences; University of the Republic, Uruguay; TUBITAK(Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK)); project ANII-FCE	This study was supported by Aarhus University, Sino-Danish Center, the University of the Chinese Academy of Sciences and the University of the Republic, Uruguay. 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Invasions	NOV	2021	23	11					3597	3612		10.1007/s10530-021-02600-w	http://dx.doi.org/10.1007/s10530-021-02600-w		JUL 2021	16	Biodiversity Conservation; Ecology	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation; Environmental Sciences & Ecology	WH4CN		Green Submitted			2025-03-11	WOS:000679615300001
J	Guo, X; Wang, ZH; Liu, L; Li, Y				Guo, Xin; Wang, Zhaohui; Liu, Lei; Li, Yang			Transcriptome and metabolome analyses of cold and darkness-induced pellicle cysts of <i>Scrippsiella trochoidea</i>	BMC GENOMICS			English	Article						Dinoflagellates; Pellicle cysts; Scrippsiella trochoidea; Cold and darkness; Transcriptome; Metabolome	ALEXANDRIUM-TAYLORI DINOPHYCEAE; HARMFUL ALGAL BLOOMS; GENE-EXPRESSION; LINGULODINIUM-POLYEDRUM; GONYAULAX-EXCAVATA; TEMPORARY CYSTS; LIFE-HISTORY; DINOFLAGELLATE; ACCLIMATION; STRESS	BackgroundDinoflagellates are a group of unicellular organisms that are a major component of aquatic eukaryotes and important contributors to marine primary production. Nevertheless, many dinoflagellates are considered harmful algal bloom (HAB) species due to their detrimental environmental and human health impacts. Cyst formation is widely perceived as an adaptive strategy of cyst-forming dinoflagellates in response to adverse environmental conditions. Dinoflagellate cysts play critical roles in bloom dynamics. However, our insight into the underlying molecular basis of encystment is still limited. To investigate the molecular processes regulating encystment in dinoflagellates, transcriptome and metabolome investigations were performed on cold and darkness-induced pellicle cysts of Scrippsiella trochoidea.ResultsNo significant transcriptional response was observed at 2 h; however, massive transcriptome and metabolome reprogramming occurred at 5 h and in pellicle cysts. The gene-to-metabolite network demonstrated that the initial transformation from vegetative cells into pellicle cysts was highly energy demanding through the activation of catabolism, including glycolysis, beta -oxidation, TCA cycle and oxidative phosphorylation, to cope with cold-darkness-induced stress. However, after transformation into pellicle cysts, the metabolism was greatly reduced, and various sugars, polyunsaturated fatty acids and amino acids accumulated to prolong survival. The identification of 56 differentially expressed genes (DEGs) related to signal transduction indicated that S. trochoidea received a cold-darkness signal that activated multiple signal transduction pathways, leading to encystment. The elevated expression of genes encoding enzymes involved in ROS stress suggested that pellicle cysts respond to increased oxidative stress. Several cell cycle-related genes were repressed. Intriguingly, 11 DEGs associated with sexual reproduction suggested that pellicle cysts (or some portion thereof) may be a product of sexual reproduction.ConclusionsThis study provides the first transcriptome and metabolome analyses conducted during the encystment of S. trochoidea, an event that requires complex regulatory mechanisms and impacts on population dynamics. The results reveal comprehensive molecular regulatory processes underlying life cycle regulation in dinoflagellates involving signal transduction, gene expression and metabolite profile, which will improve our ability to understand and monitor dinoflagellate blooms.	[Guo, Xin; Wang, Zhaohui; Liu, Lei] Jinan Univ, Coll Life Sci & Technol, Dept Ecol, West 601 Huangpu Ave, Guangzhou 510632, Peoples R China; [Guo, Xin; Li, Yang] South China Normal Univ, Sch Life Sci, Guangdong Prov Key Lab Hlth & Safe Aquaculture, Guangzhou Key Lab Subtrop Biodivers & Biomonitori, West 55 Zhongshan Ave, Guangzhou 510631, Peoples R China	Jinan University; South China Normal University	Wang, ZH (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Dept Ecol, West 601 Huangpu Ave, Guangzhou 510632, Peoples R China.; Li, Y (通讯作者)，South China Normal Univ, Sch Life Sci, Guangdong Prov Key Lab Hlth & Safe Aquaculture, Guangzhou Key Lab Subtrop Biodivers & Biomonitori, West 55 Zhongshan Ave, Guangzhou 510631, Peoples R China.	twzh@jnu.edu.cn; li-3-yang@163.com			National Natural Science Foundation of China [42076141]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was supported by the National Natural Science Foundation of China (Grant NO. 42076141). The funding body played no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.	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Genetics & Heredity	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Genetics & Heredity	TK9YT	34246248	gold, Green Submitted, Green Published			2025-03-11	WOS:000674512500001
J	Gu, HF; Huo, K; Krock, B; Bilien, G; Pospelova, V; Li, Z; Carbonell-Moore, C; Morquecho, L; Nincevic, Z; Mertens, KN				Gu, Haifeng; Huo, Kai; Krock, Bernd; Bilien, Gwenael; Pospelova, Vera; Li, Zhen; Carbonell-Moore, Consuelo; Morquecho, Lourdes; Nincevic, Zivana; Mertens, Kenneth Neil			Cyst-theca relationships of <i>Spiniferites bentorii, S. hyperacanthus, S. ramosus, S. scabratus</i> and molecular phylogenetics of <i>Spiniferites</i> and <i>Tectatodinium</i> (Gonyaulacales, Dinophyceae)	PHYCOLOGIA			English	Article						Dinoflagellates; Gonyaulax nezaniae; Gonyaulax spinifera; Tectatodinium pellitum	DINOFLAGELLATE CYST; SP-NOV; MANTELL 1850; YESSOTOXIN; GULF; PERIDINIALES; SEDIMENTS; ASSEMBLAGES; ADRIATOXIN; MORPHOLOGY	It is well known that modern resting cysts with morphologies matching those of species of the fossil genus Spiniferites germinate into motile cells of the genus Gonyaulax. Different Spiniferites species have been connected to a single Gonyaulax species, raising the question of whether they are over-classified. Through germination experiments of cysts with the morphological features of four species of Spiniferites, viz. S. bentorii, S. hyperacanthus, S. ramosus and S. scabratus, we established cyst-theca relationships. Cysts with the morphology of S. bentorii gave rise to vegetative, motile cells of Gonyaulax nezaniae sp. nov., which is characterized by two stout antapical spines. Cysts with S. hyperacanthus and S. ramosus morphologies germinated into Gonyaulax whaseongensis and G. spinifera, respectively. Cysts with S. scabratus morphology lacked a ventral pore and were attributed to Gonyaulax cf. spinifera. Gene sequences for SSU, LSU and/or ITS-5.8S rRNA were obtained from these four species, and from cysts with the morphology of Spiniferites belerius, S. mirabilis, S. lazus, Spiniferites cf. bentorii and Tectatodinium pellitum. The maximum likelihood and Bayesian inference analyses based on LSU and SSU rRNA gene sequences revealed that cysts assignable to Spiniferites formed a polyphyletic group, intermingled with Tectatodinium, Bitectatodinium, Ataxiodinium and Impagidinium, whereas Gonyaulax species appeared as monophyletic. From our results we inferred the phylogenetic positions of S. bentorii, S. mirabilis, S. lazus, S. scabratus, Tectatodinium pellitum and Gonyaulax digitale for the first time, supporting the idea that Spiniferites species are not over-classified and each of them may correspond to different Gonyaulax species.	[Gu, Haifeng; Huo, Kai] Third Inst Oceanog, Minist Nat Resources, Dept Marine Biol & Ecol, Xiamen 361005, Fujian, Peoples R China; [Krock, Bernd] Alfred Wegener Inst Polar & Marine Res, Dept Ecol Chem, Handelshafen 12, D-27570 Bremerhaven, Germany; [Bilien, Gwenael; Mertens, Kenneth Neil] IFREMER, Stn Biol Marine, LITTORAL, Pl Croix,BP40537, F-29900 Concarneau, France; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, 116 Church St SE, Minneapolis, MN 55455 USA; [Li, Zhen] Univ British Columbia, Dept Earth Ocean & Atmospher Sci, 329 West Mall, Vancouver, BC V6T IZ4, Canada; [Carbonell-Moore, Consuelo] Oregon State Univ, Dept Bot & Plant Pathol, Coll Agr Sci, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Morquecho, Lourdes] Ctr Invest Biol Noroeste CIBNOR, Dept Environm Planning & Conservat, Av IPN 195, La Paz 23096, Baja California, Mexico; [Nincevic, Zivana] Inst Oceanog & Fisheries IOF, Lab Plankton & Shellfish Toxic, Setaliste I Mestrovica 63, Split 21000, Croatia	Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Ifremer; University of Minnesota System; University of Minnesota Twin Cities; University of British Columbia; Oregon State University; CIBNOR - Centro de Investigaciones Biologicas del Noroeste	Gu, HF (通讯作者)，Third Inst Oceanog, Minist Nat Resources, Dept Marine Biol & Ecol, Xiamen 361005, Fujian, Peoples R China.; Mertens, KN (通讯作者)，IFREMER, Stn Biol Marine, LITTORAL, Pl Croix,BP40537, F-29900 Concarneau, France.	guhaifeng@tio.org.cn; kenneth.mertens@ifremer.fr	huo, kai/HHN-3492-2022; Li, Zhen/G-7667-2012; Morquecho, Lourdes/JPY-0626-2023; Krock, Bernd/ABB-7541-2020; Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015; Gu, Haifeng/ADN-4528-2022	Mertens, Kenneth/0000-0003-2005-9483; Li, Zhen/0000-0003-3989-7233; Gu, Haifeng/0000-0002-2350-9171; Morquecho, Lourdes/0000-0003-2963-8836; CARBONELL-MOORE, M. Consuelo/0000-0001-8430-2900; Pospelova, Vera/0000-0003-4049-8133	Regional Council of Brittany; General Council of Finistere; urban community of Concarneau-Cornouaille-Agglomeration; National Natural Science Foundation of China [42076085, 42030404]; National Key Research and Development Program of China [2019YFE0124700]; Natural Sciences and Engineering Research Council of Canada (NSERC); CIBNOR [PC013, 20014]; Croatian Science Foundation [IP-2014-09-3606]	Regional Council of Brittany(Region Bretagne); General Council of Finistere(Region Bretagne); urban community of Concarneau-Cornouaille-Agglomeration; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); National Key Research and Development Program of China(National Key Research & Development Program of China); Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)); CIBNOR; Croatian Science Foundation	The Regional Council of Brittany, the General Council of Finistere and the urban community of Concarneau-Cornouaille-Agglomeration are acknowledged for the funding of the Sigma 300 FE-SEM of the station of Marine Biology in Concarneau. Elisabeth Nezan is thanked for isolating Gonyaulax digitale from Concarneau. This work was supported by the National Natural Science Foundation of China (42076085, 42030404), the National Key Research and Development Program of China (2019YFE0124700). Funding for collection of sediments in coastal waters of British Columbia (Canada) was provided by a Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery grant to VP. Sediment collection at Bahia de La Paz, Gulf of California was supported by CIBNOR projects PC013 and 20014. Collecting the sediments in the Croatian coastal water was funded by the Croatian Science Foundation under the project (IP-2014-09-3606), MARIPLAN.	Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; Alvarez G, 2016, HARMFUL ALGAE, V58, P8, DOI 10.1016/j.hal.2016.07.006; Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J	Chaira, K; Rhinane, H; Ennaffah, B; Maimouni, S; Sagou, R; Loulad, S; BenMhamed, A; Agouzouk, A; BenBrahim, S; Masseret, E; Laabir, M				Chaira, K.; Rhinane, H.; Ennaffah, B.; Maimouni, S.; Sagou, R.; Loulad, S.; BenMhamed, A.; Agouzouk, A.; BenBrahim, S.; Masseret, E.; Laabir, M.			The distribution of dinoflagellate cyst assemblages in recent sediments of the Oualidia Lagoon, Morocco, with a focus on toxic species	AFRICAN JOURNAL OF MARINE SCIENCE			English	Article						Alexandrium minutum; Alexandrium tamarense complex; Atlantic Ocean; cyst morphotypes; Gymnodinium catenatum; harmful algal blooms; organic matter content; sediment characteristics	HARMFUL ALGAL BLOOMS; SURFACE SEDIMENTS; ALEXANDRIUM-CATENELLA; SPATIAL-DISTRIBUTION; MEDITERRANEAN LAGOON; COMPLEX DINOPHYCEAE; NORTH-ATLANTIC; RESTING CYSTS; RED TIDE; BAY	Harmful algal blooms (HABs) are becoming widely distributed and more frequent, threatening socioecosystems and human health. We determined species composition, abundance and spatial distribution of dinoflagellate cysts in the upper sediment of the Oualidia Lagoon located on the Atlantic coast of Morocco. Sediment samples were collected in 2017 at 51 stations, and environmental parameters were measured together with microphytoplankton abundance. Sediment characteristics including water percentage, organic matter content and grain size were determined. Fourteen dinoflagellate cyst morphotypes were identified, with Lingulodinium polyedrum (50%) and Gonyaulax spinifera (22%) dominating the assemblages. Total cyst densities ranged from 0 to 293 cysts g(-1) dry sediment. Cyst densities were positively correlated with water content and organic matter content and increased with decreasing sediment grain size. We revealed the presence of three neurotoxic dinoflagellate species: Alexandrium minutum, the Alexandrium tamarense species complex, and Gymnodinium catenatum. Numerous cysts had accumulated in the sediment, and, because they are likely responsible for the initiation of HABs in Oualidia Lagoon, they should be monitored.	[Chaira, K.; Ennaffah, B.; Sagou, R.; BenMhamed, A.; Agouzouk, A.; BenBrahim, S.] Natl Inst Fisheries Res INRH, Casablanca, Morocco; [Chaira, K.; Rhinane, H.; Loulad, S.] Univ Hassan 2, Fac Sci, Dept Geol, Lab Geosci, Casablanca, Morocco; [Chaira, K.; Masseret, E.; Laabir, M.] Montpellier Univ, CNRS, IFREMER, MARBEC,IRD, Montpellier, France; [Maimouni, S.] Univ Hassan 2, Fac Sci Ben MSick, Dept Geol, Casablanca, Morocco	Hassan II University of Casablanca; Centre National de la Recherche Scientifique (CNRS); Universite de Montpellier; Institut de Recherche pour le Developpement (IRD); Ifremer; Hassan II University of Casablanca	Laabir, M (通讯作者)，Montpellier Univ, CNRS, IFREMER, MARBEC,IRD, Montpellier, France.	mohamed.laabir@umontpellier.fr	Moumen, Aniss/I-6858-2015	Moumen, Aniss/0000-0001-5330-0136; Soufiane, MAIMOUNI/0000-0001-8902-3580				Aminot A., 1983, Manuel des analyses chimiques en milieu marin; Anglès S, 2010, DEEP-SEA RES PT II, V57, P210, DOI 10.1016/j.dsr2.2009.09.002; [Anonymous], 2004, B I NATN SCI TECH ME; [Anonymous], 1996, HARMFUL TOXIC ALGAL; Aydin H, 2011, MAR MICROPALEONTOL, V80, P44, DOI 10.1016/j.marmicro.2011.03.004; Bellair P., 1977, ELEMENTS GEOLOGIE; Belmonte G, 1997, HYDROBIOLOGIA, V355, P159, DOI 10.1023/A:1003071205424; Bennouna A, 2002, OCEANOL ACTA, V25, P159, DOI 10.1016/S0399-1784(02)01191-X; Bennouna Asmae, 2002, Marine Life, V10, P3; Blanco J, 1986, OCEANOGRAPHY WASHING, V3, P181; Carruesco C., 1989, THESIS U BORDEUX 1 F; Cho HJ, 2001, MAR MICROPALEONTOL, V42, P103, DOI 10.1016/S0377-8398(01)00016-0; Daghor Lamia, 2016, Bulletin de l'Institut Scientifique Section Sciences de la Terre - Rabat, V38, P1; Dale B., 1983, P69; de Vernal A, 2001, J QUATERNARY SCI, V16, P681, DOI 10.1002/jqs.659; Ennaffah B., 2005, RAPPORT INTERNE; Fertouna-Bellakhal M, 2014, MAR POLLUT BULL, V84, P347, DOI 10.1016/j.marpolbul.2014.04.041; Fraga S, 2015, TAXON, V64, P634, DOI 10.12705/643.15; García-Moreiras I, 2018, PALAEOGEOGR PALAEOCL, V504, P201, DOI 10.1016/j.palaeo.2018.05.032; Gayoso AM, 2001, J PLANKTON RES, V23, P463, DOI 10.1093/plankt/23.5.463; Genovesi B, 2007, HARMFUL ALGAE, V6, P837, DOI 10.1016/j.hal.2007.04.007; Genovesi B, 2013, HARMFUL ALGAE, V25, P15, DOI 10.1016/j.hal.2013.02.002; Genovesi B, 2011, J PLANKTON RES, V33, P405, DOI 10.1093/plankt/fbq127; Hadjadji I, 2020, TOXICON, V180, P79, DOI 10.1016/j.toxicon.2020.04.005; HALLEGRAEFF GM, 1993, PHYCOLOGIA, V32, P79, DOI 10.2216/i0031-8884-32-2-79.1; HARLAND R, 1983, PALAEONTOLOGY, V26, P321; Hesse KJ, 1995, OLSEN INT S, P11; Hilmi K., 2009, B I SCI, V31, P29; Horner RA, 2011, HARMFUL ALGAE, V11, P96, DOI 10.1016/j.hal.2011.08.004; INRH/DSMM (Institut National de Recherche Halieutique/Le Departement de la Salubrite du Milieu Marin), 2014, B SURV SAN ENV MIL M; INRH/DSMM (Institut National de Recherche Halieutique/Le Departement de la Salubrite du Milieu Marin), 2016, B SURV SAN ZON PROD; INRH/DSMM (Institut National de Recherche Halieutique/Le Departement de la Salubrite du Milieu Marin), 2012, B SURV SAN ENV MIL M; INRH/DSMM (Institut National de Recherche Halieutique/Le Departement de la Salubrite du Milieu Marin), 2013, B SURV SAN ENV MIL M; INRH/DSMM (Institut National de Recherche Halieutique/Le Departement de la Salubrite du Milieu Marin), 2017, B SURV SAN ENV MIL M; INRH/DSMM (Institut National de Recherche Halieutique/Le Departement de la Salubrite du Milieu Marin), 2015, B SURV SAN ENV MIL M; John U, 2014, PROTIST, V165, P779, DOI 10.1016/j.protis.2014.10.001; Joyce LB, 2005, HARMFUL ALGAE, V4, P309, DOI 10.1016/j.hal.2004.08.001; Laabir M, 2012, CAH BIOL MAR, V53, P365; Laabir M, 2011, J PLANKTON RES, V33, P1550, DOI 10.1093/plankt/fbr050; Laanaia N, 2013, HARMFUL ALGAE, V28, P31, DOI 10.1016/j.hal.2013.05.016; Larrazabal ME., 1987, DERO8714MR IFREMER; Leblad BR, 2020, HARMFUL ALGAE, V96, DOI 10.1016/j.hal.2020.101819; LEWIS J, 1988, BRIT PHYCOL J, V23, P49, DOI 10.1080/00071618800650071; Liu DY, 2012, MAR MICROPALEONTOL, V84-85, P1, DOI 10.1016/j.marmicro.2011.11.001; Lundholm N, 2011, PHYCOLOGIA, V50, P629, DOI 10.2216/11-16.1; Maanan M, 2018, HUM ECOL RISK ASSESS, V24, P602, DOI 10.1080/10807039.2017.1394176; Makaoui A, 2005, CR GEOSCI, V337, P1518, DOI 10.1016/j.crte.2005.08.013; Makaoui A., 2018, EUR SCI J, V14, P93, DOI [10.19044/esj.2018.v14n18p93, DOI 10.19044/ESJ.2018.V14N18P93]; Masseret E, 2009, APPL ENVIRON MICROB, V75, P2037, DOI 10.1128/AEM.01686-08; Matsuoka K, 2003, J PLANKTON RES, V25, P1461, DOI 10.1093/plankt/fbg111; Matsuoka K., 2000, TECHNICAL GUIDE MODE; Mejjad N, 2016, J RADIOANAL NUCL CH, V309, P1133, DOI 10.1007/s10967-016-4714-8; Natij L., 2014, Int. 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JUL 3	2021	43	3					279	292		10.2989/1814232X.2021.1945684	http://dx.doi.org/10.2989/1814232X.2021.1945684			14	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	UZ3PZ		Green Submitted			2025-03-11	WOS:000702121700001
J	Jerney, J; Rengefors, K; Nagai, S; Krock, B; Sjöqvist, C; Suikkanen, S; Kremp, A				Jerney, Jacqueline; Rengefors, Karin; Nagai, Satoshi; Krock, Bernd; Sjoqvist, Conny; Suikkanen, Sanna; Kremp, Anke			SEASONAL GENOTYPE DYNAMICS OF A BALTIC DINOFLAGELLATE - PELAGIC POPULATIONS ARE HOMOGENEOUS AND AS DIVERSE AS BENTHIC SEED BANKS	PHYCOLOGIA			English	Meeting Abstract						Seed bank; sequencing; resting stages			[Jerney, Jacqueline; Suikkanen, Sanna] Finnish Environm Inst, Ctr Marine Res, Agnes Sjobergin Katu 2, Helsinki 00790, Finland; [Jerney, Jacqueline] Univ Helsinki, Tvarminne Zool Stn, Hango 10900, Finland; [Rengefors, Karin] Lund Univ, Dept Biol, Solvegatan 37, S-22362 Lund, Sweden; [Nagai, Satoshi] Natl Res Inst Fisheries Sci, Kanazawa Ku, 2-12-4 Fukuura, Yokohama, Kanagawa 2368648, Japan; [Krock, Bernd] Alfred Wegener Inst, Helmholtz Zentrum Polar & Meeresforsch, Handelshafen 12, D-27570 Bremerhaven, Germany; [Sjoqvist, Conny] Abo Akad Univ, Fac Sci & Engn Environm & Marine Biol, Tykistokatu 6, Turku 20520, Finland; [Kremp, Anke] Leibniz Inst Ostseeforsch Warnemunde, Seestr 15, D-18119 Rostock, Germany	Finnish Environment Institute; University of Helsinki; Lund University; Japan Fisheries Research & Education Agency (FRA); Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Abo Akademi University; Leibniz Institut fur Ostseeforschung Warnemunde		jacqueline.jerney@gmx.at	Nagai, Satoshi/HOA-8686-2023; Rengefors, Karin/K-5873-2019; Sjöqvist, Conny/K-3538-2019; Krock, Bernd/ABB-7541-2020	Nagai, Satoshi/0000-0001-7510-0063	Academy of Finland; Walter and Andree de Nottbeck Foundation; Japan Society for the Promotion of Science	Academy of Finland(Research Council of Finland); Walter and Andree de Nottbeck Foundation; Japan Society for the Promotion of Science(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science)	Academy of Finland, Walter and Andree de Nottbeck Foundation, Japan Society for the Promotion of Science		0	0	0	0	2	TAYLOR & FRANCIS LTD	ABINGDON	2-4 PARK SQUARE, MILTON PARK, ABINGDON OR14 4RN, OXON, ENGLAND	0031-8884	2330-2968		PHYCOLOGIA	Phycologia	JUL 1	2021	60			1	SI		52	52						1	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	TW3ZO					2025-03-11	WOS:000682342700127
J	Li, FT; Yang, AA; Hu, ZX; Lin, SH; Deng, YY; Tang, YZ				Li, Fengting; Yang, Aoao; Hu, Zhangxi; Lin, Siheng; Deng, Yunyan; Tang, Ying Zhong			Probing the Energetic Metabolism of Resting Cysts under Different Conditions from Molecular and Physiological Perspectives in the Harmful Algal Blooms-Forming Dinoflagellate <i>Scrippsiella trochoidea</i>	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES			English	Article						ATP content; ATP synthase subunit beta (beta-F-1-ATPase); energetic metabolism; resting cyst; Scrippsiella trochoidea; suppression subtractive hybridization (SSH); viability	ATP SYNTHASE; BETA-SUBUNIT; LIFE-CYCLE; GONYAULAX-TAMARENSIS; GENE; CLONING; TOOL; PCR; PHOSPHORYLATION; GERMINATION	Energetic metabolism is essential in maintaining the viability of all organisms. Resting cysts play important roles in the ecology of dinoflagellates, particularly for harmful algal blooms (HABs)-causative species. However, the energetic metabolism underlying the germination potency maintenance of resting cysts of dinoflagellate have been extremely scarce in studies from physiological and, particularly, molecular perspectives. Therefore, we used the cosmopolitan Scrippsiella trochoidea as a representative of HABs-forming and cyst-producing dinoflagellates in this work to obtain novel insights into the molecular mechanisms, regulating the energetic metabolism in dinoflagellate resting cysts, under different physical condition. As the starting step, we established a cDNA subtractive library via suppression subtractive hybridization (SSH) technology, from which we screened an incomplete sequence for the beta subunit of ATP synthase gene (beta-F-1-ATPase), a key indicator for the status of cell's energetic metabolism. The full-length cDNA of beta-F-1-ATPase gene from S.trochoidea (St beta-F-1-ATPase) was then obtained via rapid amplification of cDNA ends (RACE) (Accession: MZ343333). Our real-time qPCR detections, in vegetative cells and resting cysts treated with different physical conditions, revealed that (1) the expression of St beta-F 1 -ATPase in resting cysts was generally much lower than that in vegetative cells, and (2) the St beta-F-1-ATPase expressions in the resting cysts under darkness, lowered temperature, and anoxia, and during an extended duration of dormancy, were significantly lower than that in cysts under the condition normally used for culture-maintaining (a 12 h light:12 h dark cycle, 21 degrees C, aerobic, and newly harvested). Our detections of the viability (via Neutral Red staining) and cellular ATP content of resting cysts, at the conditions corresponding to the abovementioned treatments, showed that both the viability and ATP content decreased rapidly within 12 h and then maintained at low levels within the 4-day experimentation under all the three conditions applied (4 degrees C, darkness, and anoxia), which are well in accordance with the measurements of the transcription of St beta-F-1-ATPase. These results demonstrated that the energy consumption of resting cysts reaches a low, but somehow stable, level within a short time period and is lower at low temperature, darkness, and anoxia than that at ambient temperature. Our work provides an important basis for explaining that resting cysts survive long-term darkness and low temperature in marine sediments from molecular and physiological levels.	[Li, Fengting; Yang, Aoao; Hu, Zhangxi; Lin, Siheng; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Li, Fengting] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Laoshan Laboratory; Chinese Academy of Sciences	Deng, YY; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Deng, YY; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Deng, YY; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China.	lifengting@qdio.ac.cn; yangaoao@lyu.edu.cn; zhu@qdio.ac.cn; lsh2246@mnnu.edu.cn; yunyandeng@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023	Hu, Zhangxi/0000-0002-4742-4973; Tang, Ying-Zhong/0000-0003-0446-3128; Deng, Yunyan/0000-0001-5967-3611	Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]; National Science Foundation of China [41606126, 41776125]	Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC))	This research was funded by the Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences, grant number COMS2019Q09 and the National Science Foundation of China, grant number 41606126 and 41776125.	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JUL	2021	22	14							7325	10.3390/ijms22147325	http://dx.doi.org/10.3390/ijms22147325			17	Biochemistry & Molecular Biology; Chemistry, Multidisciplinary	Science Citation Index Expanded (SCI-EXPANDED)	Biochemistry & Molecular Biology; Chemistry	TP1FU	34298944	Green Published, gold			2025-03-11	WOS:000677344800001
J	Imai, I; Inaba, N; Yamamoto, K				Imai, Ichiro; Inaba, Nobuharu; Yamamoto, Keigo			Harmful algal blooms and environmentally friendly control strategies in Japan	FISHERIES SCIENCE			English	Review						Harmful algal bloom; Environmentally friendly strategy; Diatom; Sediment perturbation; Algicidal bacteria; Seagrass bed; Aquatic plant; Sato-Umi	SETO-INLAND-SEA; DINOFLAGELLATE ALEXANDRIUM-TAMARENSE; GROWTH-INHIBITING BACTERIA; GREAT EAST JAPAN; HETEROSIGMA-AKASHIWO RAPHIDOPHYCEAE; PARALYTIC SHELLFISH TOXINS; RED TIDE PHYTOPLANKTON; ALGICIDAL BACTERIA; RESTING CYSTS; HIROSHIMA-BAY	The presence and status of harmful algal blooms (HABs) in Japan are reviewed, revealing a decrease in red tides; however, toxic blooms are found to be increasing in western Japan. Environmentally friendly control strategies against HABs are also compared with integrated agricultural pest management. Very high densities (10(5)-10(8) CFU/g) of algicidal and growth-inhibiting bacteria were found in biofilm on seagrass and seaweed surfaces and in surrounding coastal seawater. The situation in freshwater ecosystems is similar to coastal seas for toxic cyanobacterium, Microcystis aeruginosa, and aquatic plants. These findings offer new insights into the ecology of influential bacteria and harmful algae, suggesting that protection and restoration of native seagrasses and seaweeds in coastal marine environments should be implemented to suppress HABs. Diatom blooms were successfully induced with bottom sediment perturbation to prevent the occurrence of harmful flagellates such as Chattonella spp. and Alexandrium catenella in the Seto Inland Sea; however, this method requires robust and reproducible verification. "Sato-Umi" is a helpful concept for HAB control in the sea and freshwater ecosystems when adequately managed by people (e.g., appropriate bottom perturbation; protection and restoration of seaweeds, seagrasses, and aquatic plants; application of polycultures of fish, seaweeds, etc.).	[Imai, Ichiro] Lake Biwa Museum, 1091 Oroshimo Cho, Shiga 5250001, Japan; [Inaba, Nobuharu] Publ Works Res Inst, Civil Engn Res Inst Cold Reg, Toyohira Ku, 1-3-134 Hiragishi, Sapporo, Hokkaido 0628602, Japan; [Yamamoto, Keigo] Res Inst Environm Agr & Fisheries, 4-4-2 Shakudo, Habikino, Osaka 5830862, Japan; [Imai, Ichiro] Hokkaido Univ, Hakodate, Hokkaido, Japan	PWRI: Public Works Research Institute; Hokkaido University	Imai, I (通讯作者)，Lake Biwa Museum, 1091 Oroshimo Cho, Shiga 5250001, Japan.; Imai, I (通讯作者)，Hokkaido Univ, Hakodate, Hokkaido, Japan.	imai1ro@fish.hokudai.ac.jp		Inaba, Nobuharu/0000-0002-5115-0063; Imai, Ichiro/0000-0002-8913-3023	Fisheries Agency of Japan; Japan Society for the Promotion of Science KAKENHI [JP19HP2002]	Fisheries Agency of Japan; Japan Society for the Promotion of Science KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	The dedicated contributions of the students of Kyoto and Hokkaido University involved in the investigations on HABs are deeply appreciated. Studies in this article were supported in part by grants from the Fisheries Agency of Japan. The publication of this review was also supported by the Japan Society for the Promotion of Science KAKENHI JP19HP2002. We would like to thank Editage (www.editage.com) for English language editing.	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Sci.	JUL	2021	87	4					437	464		10.1007/s12562-021-01524-7	http://dx.doi.org/10.1007/s12562-021-01524-7		JUN 2021	28	Fisheries	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries	TI0JO		hybrid			2025-03-11	WOS:000668409900001
J	Hofmann, EE; Klinck, JM; Filippino, KC; Egerton, T; Davis, LB; Echevarría, M; Pérez-Vega, E; Mulholland, MR				Hofmann, Eileen E.; Klinck, John M.; Filippino, Katherine C.; Egerton, Todd; Davis, L. Brynn; Echevarria, Michael; Perez-Vega, Eduardo; Mulholland, Margaret R.			Understanding controls on <i>Margalefidinium polykrikoides</i> blooms in the lower Chesapeake Bay	HARMFUL ALGAE			English	Article						Harmful algal blooms; Margalefidinium polykrikoides; Time-dependent model; Mixotrophy; Chesapeake Bay; Nutrient limitation	HARMFUL ALGAL BLOOMS; COCHLODINIUM-POLYKRIKOIDES; RED-TIDE; NEW-YORK; DINOFLAGELLATE CYSTS; GONYAULAX-TAMARENSIS; VERTICAL MIGRATION; PHYTOPLANKTON; MIXOTROPHY; GROWTH	A time-dependent model of Margalefidinium polykrikoides, a mixotrophic dinoflagellate, cell growth was implemented to assess controls on blooms in the Lafayette River, a shallow, tidal sub-tributary of the lower Chesapeake Bay. Simulated cell growth included autotrophic and heterotrophic contributions. Autotrophic cell growth with no nutrient limitation resulted in a bloom but produced chlorophyll concentrations that were 45% less than observed bloom concentrations (similar to 80 mg Chl m(-3) vs. 145 mg Chl m(-3)) and a bloom progression that did not match observations. Excystment (cyst germination) was important for bloom initiation, but did not influence the development of algal biomass or bloom duration. Encystment (cyst formation) resulted in small losses of biomass throughout the bloom but similarly, did not influence M. polykrikoides cell density or the duration of blooms. In contrast, the degree of heterotrophy significantly impacted cell densities achieved and bloom duration. When heterotrophy contributed a constant 30% to cell growth, and dissolved inorganic nitrogen was not limiting, simulated chlorophyll concentrations were within those observed during blooms (maximum similar to 140 mg Chl m(-3)). However, nitrogen limitation quenched the maximum chlorophyll concentration by a factor of three. Specifying heterotrophy as an increasing function of nutrient limitation, allowing it to contribute up to 50% and 70% of total growth, resulted in simulated maximum chlorophyll concentrations of 90 mg Chl m(-3) and 180 mg Chl m(-3), respectively. This suggested that blooms of M. polykrikoides in the Lafayette River are fortified and maintained by substantial heterotrophic nutritional inputs. The timing and progression of the simulated bloom was controlled by the temperature range, 23 degrees C to 28 degrees C, that supports M. polykrikoides growth. Temperature increases of 0.5 degrees C and 1.0 degrees C, consistent with current warming trends in the lower Chesapeake Bay due to climate change, shifted the timing of bloom initiation to be earlier and extended the duration of blooms; maximum bloom magnitude was reduced by 50% and 65%, respectively. Warming by 5 degrees C suppressed the summer bloom. The simulations suggested that the timing of M. polykrikoides blooms in the Lafayette River is controlled by temperature and the bloom magnitude is determined by trade-offs between the severity of nutrient limitation and the relative contribution of mixotrophy to cell growth.	[Hofmann, Eileen E.; Klinck, John M.; Davis, L. Brynn] Old Dominion Univ, Ctr Coastal Phys Oceanog, Norfolk, VA 23508 USA; [Filippino, Katherine C.; Echevarria, Michael; Perez-Vega, Eduardo; Mulholland, Margaret R.] Old Dominion Univ, Dept Ocean & Earth Sci, Norfolk, VA 23508 USA; [Egerton, Todd] Virginia Dept Hlth, Div Shellfish Safety & Waterborne Hazards, 830 Southampton Ave, Norfolk, VA 23510 USA; [Filippino, Katherine C.] Hampton Rd Planning Dist Commiss, 723 Woodlake Dr, Chesapeake, VA 23320 USA	Old Dominion University; Old Dominion University	Hofmann, EE (通讯作者)，Old Dominion Univ, Ctr Coastal Phys Oceanog, Norfolk, VA 23508 USA.	hofmann@ccpo.odu.edu	; Mulholland, Margaret/E-8480-2011	Hofmann, Eileen/0000-0001-6710-4371; Egerton, Todd/0000-0002-0341-7915; Mulholland, Margaret/0000-0001-8819-189X; Echevarria, Michael/0000-0002-4786-6229; Klinck, John/0000-0003-4312-5201; Perez Vega, Eduardo/0000-0002-4783-3881	NOAA ECOHAB [NA18NOS4780176]; Hampton Roads Sanitation District; Virginia Department of Health; Virginia Department of Environmental Quality	NOAA ECOHAB(National Oceanic Atmospheric Admin (NOAA) - USA); Hampton Roads Sanitation District; Virginia Department of Health; Virginia Department of Environmental Quality	This research was supported by NOAA ECOHAB grant number NA18NOS4780176, the Hampton Roads Sanitation District, the Virginia Department of Health, and the Virginia Department of Environmental Quality. We thank C. Jones for design advice for the graphical abstract. Comments from two anonymous reviewers significantly improved the model and the manuscript.	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Yoo YD, 2009, J EUKARYOT MICROBIOL, V56, P413, DOI 10.1111/j.1550-7408.2009.00421.x	91	12	14	0	15	ELSEVIER	AMSTERDAM	RADARWEG 29, 1043 NX AMSTERDAM, NETHERLANDS	1568-9883	1878-1470		HARMFUL ALGAE	Harmful Algae	JUL	2021	107								102064	10.1016/j.hal.2021.102064	http://dx.doi.org/10.1016/j.hal.2021.102064		JUN 2021	16	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	UJ3YA	34456021				2025-03-11	WOS:000691223700006
J	Gottschling, M; Carbonell-Moore, MC; Mertens, KN; Kirsch, M; Elbrächter, M; Tillmann, U				Gottschling, Marc; Carbonell-Moore, Maria Consuelo; Mertens, Kenneth Neil; Kirsch, Monika; Elbraechter, Malte; Tillmann, Urban			<i>Fensomea setacea</i>, gen. & sp. nov<i>.</i> (Cladopyxidaceae, Dinophyceae), is neither gonyaulacoid nor peridinioid as inferred from morphological and molecular data	SCIENTIFIC REPORTS			English	Article							DINOFLAGELLATE; THORACOSPHAERACEAE; PHYLOGENY; EVOLUTION; PATTERNS; TAXONOMY; CYST	Dinophyte evolution is essentially inferred from the pattern of thecal plates, and two different labelling systems are used for the important subgroups Gonyaulacales and Peridiniales. The partiform hypotheca of cladopyxidoid dinophytes fits into the morphological concepts of neither group, although they are assigned to the Gonyaulacales. Here, we describe the thecate dinophyte Fensomea setacea, gen. & sp. nov., which has a cladopyxidoid tabulation. The cells displayed a Kofoidean plate formula APC, 3 ', 4a, 7 '', 7C, 6S, 6 ' ' ', 2 ' ' ' ', and slender processes were randomly distributed over the echinate or baculate surface. In addition, we obtained rRNA sequences of F. setacea, gen. & sp. nov., but dinophytes that exhibit a partiform hypotheca did not show a close relationship to Gonyaulacales. Character evolution of thecate dinophytes may have progressed from the ancestral state of six postcingular plates, and two more or less symmetrically arranged antapical plates, towards patterns of only five postcingular plates (Peridiniales) or more asymmetrical configurations (Gonyaulacales). Based on our phylogenetic reconsiderations the contact between the posterior sulcal plate and the first postcingular plate, as well as the contact between an antapical plate and the distalmost postcingular plate, do not represent a rare, specialized gonyaulacoid plate configuration (i.e., the partiform hypotheca of cladopyxidoid dinophytes). Instead, these contacts correspond to the common and regular configuration of peridinioid (and other) dinophytes.	[Gottschling, Marc] Ludwig Maximilians Univ Munchen, GeoBioctr, Dept Biol Systemat Biodiversitat & Evolut Pflanze, Menzinger Str 67, D-80638 Munich, Germany; [Carbonell-Moore, Maria Consuelo] Oregon State Univ, Dept Bot & Plant Pathol, Coll Agr Sci, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Mertens, Kenneth Neil] IFREMER, LITTORAL, Stn Biol Marine, Pl Croix,BP40537, F-29900 Concarneau, France; [Kirsch, Monika] Univ Bremen, Fachbereich Geowissensch, Fachrichtung Hist Geol Palaontol, Klagenfurter Str, D-28359 Bremen, Germany; [Elbraechter, Malte] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Hafenstr 43, D-25992 List Auf Sylt, Germany; [Tillmann, Urban] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany	University of Munich; Oregon State University; Ifremer; University of Bremen; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Tillmann, U (通讯作者)，Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany.	Urban.Tillmann@awi.de	Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015	Mertens, Kenneth/0000-0003-2005-9483	Projekt DEAL	Projekt DEAL	Open Access funding enabled and organized by Projekt DEAL.	[Anonymous], 1899, Abh. Naturwiss. Vereins Bremen; [Anonymous], 1985, SPOROPOLLENIN DINOFL; Balech E., 1967, Neotropica, V13, P105; Balech E, 1964, HIDROBIOL, V1, P27; Balech E., 1995, The genus Alexandrium Halim (Dinoflagellata); Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J	Persson, A; Smith, BC; Alix, JH; Li, YQ; Holohan, BA; Wikfors, GH				Persson, Agneta; Smith, Barry C.; Alix, Jennifer H.; Li, Yaqin; Holohan, Bridget A.; Wikfors, Gary H.			Differences in Specific Mass Density Between Dinoflagellate Life Stages and Relevance to Accumulation by Hydrodynamic Processes	JOURNAL OF PHYCOLOGY			English	Article						density gradient; dinoflagellate; encystment; gamete; percoll; Scrippsiella lachrymosa; sexual life stage	CELL-DENSITY; SCRIPPSIELLA; ALEXANDRIUM; DINOPHYCEAE; CYSTS; ENCYSTMENT; LACHRYMOSA; PATTERNS; HARMFUL; VARIABILITY	One previously unstudied aspect of differences between sexual and asexual life stages in large-scale transport and accumulation is density (mass per unit volume) of cells in each life stage. The specific density was determined for Scrippsiella lachrymosa cells in medium with and without nitrogen (N) enrichment through density-gradient centrifugation. Growth medium without N addition is often called "encystment medium" when used for the purpose of resting cyst formation in cyst-forming dinoflagellates; mating gametes are usually seen after 2-3 days. Significant differences in specific density were found after 2 days in encystment medium simultaneously with the observation of typical gamete swimming behavior and mating. The specific density of cells in encystment medium was 1.06 g center dot cm(-3); whereas, the specific density of cells in growth medium was 1.11 g center dot cm(-3). Cells in encystment medium were found to have significantly increased lipid content, reduced chlorophyll content, and reduced internal complexity. The findings may explain differential transport of less dense and chemotactically aggregating gametes into surface blooms in contrast to denser vegetative cells that perform daily vertical migration and do not aggregate. Passive accumulation of non-migrating gametes into layers in stagnant water also can be explained, as well as sinking of zygotes when the storage of highly dense starch increases. Resting cysts had a density of over 1.14 g center dot cm(-3) and would sink to become part of the silt fraction of the sediment. We suggest that differences in behavior and buoyancy between sexual and asexual life stages cause differences in cell accumulation, and therefore large-scale, environmental transport could be directly dependent upon life-cycle transitions.	[Persson, Agneta] Gothenburg Univ, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden; [Smith, Barry C.; Alix, Jennifer H.; Li, Yaqin; Wikfors, Gary H.] NOAA, Natl Marine Fisheries Serv, Northeast Fisheries Sci Ctr, Milford Lab, 212 Rogers Ave, Milford, CT 06460 USA; [Holohan, Bridget A.] Univ Connecticut, Dept Marine Sci, 1080 Shennecossett Rd, Groton, CT 06340 USA	University of Gothenburg; National Oceanic Atmospheric Admin (NOAA) - USA; University of Connecticut	Persson, A (通讯作者)，Gothenburg Univ, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.	agnetapersson77@gmail.com		Persson, Agneta/0000-0003-0202-6514; Smith, Barry/0000-0002-8303-4569	Angpanneforeningens forkningsstiftelse; J. Gust. Richerts foundation	Angpanneforeningens forkningsstiftelse; J. Gust. Richerts foundation	We are grateful to the reviewers and the editor for constructive comments on earlier versions of the manuscript. Dr. Sandra Shumway not only allowed A.P. to work in her laboratory during the government shutdown in October 2013 (that closed the Milford laboratory for the first week of the research trip), but also let her stay in her house while doing research at University of Connecticut, Avery Point. For this, A.P. is very grateful. Financial support was provided by angstrom ngpanneforeningens forkningsstiftelse and J. Gust. Richerts foundation. Mention of trade names does not imply endorsement.	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Phycol.	OCT	2021	57	5					1492	1503		10.1111/jpy.13181	http://dx.doi.org/10.1111/jpy.13181		JUN 2021	12	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	WI1JT	33960400	hybrid, Green Published			2025-03-11	WOS:000662620900001
J	Park, JS; Li, Z; Kim, HJ; Kim, KH; Lee, KW; Youn, JY; Kwak, KY; Shin, HH				Park, Joon Sang; Li, Zhun; Kim, Hyun Jung; Kim, Ki Hyun; Lee, Kyun Woo; Youn, Joo Yeon; Kwak, Kyeong Yoon; Shin, Hyeon Ho			First Report of the Marine Benthic Dinoflagellate <i>Bysmatrum subsalsum</i> from Korean Tidal Pools	JOURNAL OF MARINE SCIENCE AND ENGINEERING			English	Article						Bysmatrum; cyst; eyespot; morphology; ribotype	POLYKRIKOIDES MARGALEF DINOPHYCEAE; PHYLOGENETIC-RELATIONSHIPS; NOV. PERIDINIALES; MORPHOLOGY; GYMNODINIALES; CYSTS; GULF; GEN.; SEA	Dense patches were observed in the tidal pools of the southern area of Korea. To clarify the causative organisms, the cells were collected and their morphological features were examined using light and scanning electron microscopy (SEM). In addition, after establishing strains for the cells the molecular phylogeny was inferred with concatenated small subunit (SSU) and large subunit (LSU) rRNA sequences. The cells were characterized by a nucleus in the hypotheca, strong reticulations in thecal plates, the separation of plates 2a and 3a, the tear-shaped apical pore complex, an elongated rectangular 1a plate and the absence of the right sulcal list. The thecal plate formula was Po, X, 4 ', 3a, 7 '', 6c, 4S, 5 ''', 2 ''''. Based on these morphological features, the cells were identified as Bysmatrum subsalsum. In the culture, the spherical cysts of B. subsalsum without thecal plates were observed. Molecular phylogeny revealed two ribotypes of B. subsalsum are identified; The Korean isolates were nested within the ribotype B consisting of the isolates from China, Malaysia and the French Atlantic, whereas the ribotype A includes only the isolates from the Mediterranean Sea. In the phylogeny, B. subsalsum and B. austrafrum were grouped. This can be supported by the morphological similarity between the two species, indicating that the two species may be conspecific, however B. subsalsum may distinguish from B. austrafrum, because of differences in the types of eyespots reported in previous studies. These findings support the idea that there is cryptic diversity within B. subsalsum.	[Park, Joon Sang; Kim, Hyun Jung; Youn, Joo Yeon; Kwak, Kyeong Yoon; Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Li, Zhun; Kim, Ki Hyun] Korea Res Inst Biosci & Biotechnol, Biol Resource Ctr, Korean Collect Type Cultures KCTC, Jeongeup 56212, South Korea; [Kim, Hyun Jung] Pukyong Natl Univ, Dept Oceanog, Yongso Ro, Busan 48513, South Korea; [Lee, Kyun Woo] Korea Inst Ocean Sci & Technol, Marine Biotechnol Res Ctr, Busan 49111, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Korea Research Institute of Bioscience & Biotechnology (KRIBB); Pukyong National University; Korea Institute of Ocean Science & Technology (KIOST)	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.; Lee, KW (通讯作者)，Korea Inst Ocean Sci & Technol, Marine Biotechnol Res Ctr, Busan 49111, South Korea.	jspark1101@kiost.ac.kr; lizhun@kribb.re.kr; guswjd9160@kiost.ac.kr; kimkh@kribb.re.kr; kyunu@kiostac.kr; yjy5225@kiost.ac.kr; kky3827@kiost.ac.kr; shh961121@kiost.ac.kr	LI, ZHUN/GLT-3478-2022	Shin, Hyeon Ho/0000-0002-9711-6717; LI, ZHUN/0000-0001-8961-9966	Korea Institute of Ocean Science Technology [PE99921]; National Marine Biodiversity Institute of Korea [2021M01100]; National Research Foundation of Korea (NRF) [2018R1A6A3A01012375]; KRIBB Research Initiative Program [KGM5232113]; National Research Foundation of Korea (NRF) - Korea government (MSIT) [2021R1C1C1008377]	Korea Institute of Ocean Science Technology; National Marine Biodiversity Institute of Korea; National Research Foundation of Korea (NRF)(National Research Foundation of Korea); KRIBB Research Initiative Program; National Research Foundation of Korea (NRF) - Korea government (MSIT)	This work was supported by grants from Korea Institute of Ocean Science & Technology (PE99921), the National Marine Biodiversity Institute of Korea (2021M01100), the National Research Foundation of Korea (NRF) (No. 2018R1A6A3A01012375), and by the KRIBB Research Initiative Program (KGM5232113) and the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (No. 2021R1C1C1008377).	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Mar. Sci. Eng.	JUN	2021	9	6							649	10.3390/jmse9060649	http://dx.doi.org/10.3390/jmse9060649			11	Engineering, Marine; Engineering, Ocean; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Oceanography	SY9IQ		gold			2025-03-11	WOS:000666193200001
J	Qin, QB; Shen, J; Reece, KS; Mulholland, MR				Qin, Qubin; Shen, Jian; Reece, Kimberly S.; Mulholland, Margaret R.			Developing a 3D mechanistic model for examining factors contributing to harmful blooms of Margalefidinium polykrikoides in a temperate estuary	HARMFUL ALGAE			English	Article						Margalefidinium polykrikoides; Mixotrophy; Estuary; Physical processes; Cyst germination; Modeling	DINOFLAGELLATE COCHLODINIUM-POLYKRIKOIDES; FRAGILIDIUM SUBGLOBOSUM DINOPHYCEAE; LOWER CHESAPEAKE BAY; ALGAL BLOOMS; TRANSPORT PROCESSES; PHYSICAL TRANSPORT; HYDRODYNAMIC MODEL; PREY CONCENTRATION; CONCEPTUAL MODELS; LIGHT-INTENSITY	Blooms of Margalefidinium (previously Cochlodinium) polykrikoides occur almost annually in summer in the lower Chesapeake Bay and its tributaries (e.g., the James and York Rivers). The Lafayette River, a sub-tributary of the lower James River, has been recognized as an initiation location for blooms in this region. The timing of bloom initiation varies interannually, ranging from late June to early August. To fully understand critical environmental factors controlling bloom initiation and interactions between physical and biological processes, a numerical module simulating M. polykrikoides blooms was developed with a focus on the bloom initiation. The module also includes life cycle and behavioral strategies such as mixotrophy, vertical migration, cyst dynamics and grazing suppression. Parameterizations for these behaviors were assigned based on published laboratory culture experiments. The module was coupled with a 3D physical-biogeochemical model for the James River that examined the contribution of each environmental factor and behavioral strategy to bloom initiation and development. Model simulation results highlight the importance of mixotrophy in maintaining high growth rates for M. polykrikoides in this region. Model results suggest that while many factors contribute to the initiation process, temperature, physical transport processes, and cyst germination are the three dominant factors controlling the interannual variability in the timing of bloom initiation.	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J	Liow, GR; Lau, WLS; Law, IK; Gu, HF; Leaw, CP; Lim, PT				Liow, Guat Ru; Lau, Winnie Lik Sing; Law, Ing Kuo; Gu, Haifeng; Leaw, Chui Pin; Lim, Po Teen			Sexual processes and life cycle transitions of the tropical Pacific <i>Alexandrium minutum</i> (Dinophyceae)	PHYCOLOGICAL RESEARCH			English	Article						cyst; dormancy; encystment; excystment; harmful algal blooms	DINOFLAGELLATE GYMNODINIUM-CATENATUM; RESTING CYSTS; TAMARENSE DINOPHYCEAE; TOXIN PRODUCTION; BLOOM DYNAMICS; SOUTH-AFRICA; EXCYSTMENT; GERMINATION; CATENELLA; ENCYSTMENT	Resting cysts of harmful marine dinoflagellates, including Alexandrium species, play an important role in their bloom dynamics, where massive cyst germination is regarded as the natural phenomenon that initiates blooms. The life cycle of Alexandrium minutum from the temperate region has been intensively studied, however, related studies on its tropical counterparts are scarce. In this study, sexual reproduction of a toxigenic A. minutum (tropical Pacific ribotype) was investigated in a laboratory setting. Gamete expression was observed in both compatible cross-mating and self-crossed cultures, but sexual induction was observed only in the compatible cross-mating cultures, confirming the heterothallic nature of the species. Resting cysts were successfully produced in 41 out of 91 pairwise combinations of cross-mating strains. The crossing matrix results showed that the mating system of the tropical Pacific A. minutum was complex, with at least four distinct mating groups observed. The resting cysts had a relatively shorter dormancy period (5-8 days). The rapid encystment-excystment processes and a short cyst dormancy period in this tropical Pacific A. minutum are believed to play crucial roles in governing the bloom and its dynamics in the tropical coastal region.	[Liow, Guat Ru; Lau, Winnie Lik Sing; Law, Ing Kuo; Leaw, Chui Pin; Lim, Po Teen] Univ Malaya, Bachok Marine Res Stn, Inst Ocean & Earth Sci, Bachok, Kelantan, Malaysia; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog, Xiamen, Peoples R China	Universiti Malaya; Ministry of Natural Resources of the People's Republic of China	Leaw, CP; Lim, PT (通讯作者)，Univ Malaya, Bachok Marine Res Stn, Inst Ocean & Earth Sci, Bachok, Kelantan, Malaysia.	cpleaw@um.edu.my; ptlim@um.edu.my	Gu, Haifeng/ADN-4528-2022; Lim, Po Teen/C-9758-2013; Leaw, Chui Pin/F-5220-2012	Gu, Haifeng/0000-0002-2350-9171; Lim, Po Teen/0000-0003-2823-0564; Leaw, Chui Pin/0000-0003-3336-1438	Malaysian government through the Ministry of Higher Education HiCoE Fund [IOES-2014C]; Long Term Research Grant Scheme [LRGS/1/2020/UMT/01/1/3]; China-ASEAN Maritime Cooperation Fund; MyBrain Scholarship	Malaysian government through the Ministry of Higher Education HiCoE Fund; Long Term Research Grant Scheme; China-ASEAN Maritime Cooperation Fund; MyBrain Scholarship	This study was funded by the Malaysian government through the Ministry of Higher Education HiCoE Fund [IOES-2014C], Long Term Research Grant Scheme [LRGS/1/2020/UMT/01/1/3] to PT Lim; China-ASEAN Maritime Cooperation Fund to PT Lim and H Gu. GR Liow was supported by MyBrain Scholarship and this formed part of her MSc project. We are grateful to Prof. Kazumi Matsuoka (Nagasaki University) for his guidance in cyst studies.	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J	Tillmann, U; Bantle, A; Krock, B; Elbrächter, M; Gottschling, M				Tillmann, Urban; Bantle, Alexis; Krock, Bernd; Elbraechter, Malte; Gottschling, Marc			Recommendations for epitypification of dinophytes exemplified by <i>Lingulodinium polyedra</i> and molecular phylogenetics of the Gonyaulacales based on curated rRNA sequence data	HARMFUL ALGAE			English	Article							SP-NOV DINOPHYCEAE; CYST-THECA RELATIONSHIP; DINOFLAGELLATE RESTING CYSTS; PROTOCERATIUM-RETICULATUM; FINE-STRUCTURE; LIFE-CYCLE; COMB.-NOV; MARINE; THORACOSPHAERACEAE; YESSOTOXINS	Gonyaulacales include a considerable number of harmful algae and to understand their origin and rise, knowledge of the evolutionary relationships is necessary. Many scientific names of protists introduced prior to the availability of DNA analytics are ambiguous and impede communication about biological species and their traits in the microbial world. Strains of Lingulodinium polyedra were established from its type locality in the Kiel Fjord (Germany) to clarify its taxonomy. Moreover, the phylogeny of Gonyaulacales was inferred based on 329 rRNA sequence accessions compiled in a curated sequence data base, with as much as possible type material equivalents included. Gonyaulacales were monophyletic and segregated into seven lineages at high systematic level, of which +Lingulodiniaceae constituted the first branch of the Gonyaulacales. Their type species had a plate formula APC (Po, X, cp), 3', 3a, 6 '' 6c, 6s, 6''', 2 '''' and is taxonomically clarified by epitypification. Recommendations for this important taxonomic tool are provided, with a focus on microorganisms. Most gonyaulacalean taxa established at generic rank are monophyletic, with Alexandrium, Coolia and Gonyaulax as notable exceptions. From an evolutionary perspective, gonyaulacalean dinophytes with quin-queform hypotheca are monophyletic and derive from a paraphyletic group showing the sexiform configuration.	[Tillmann, Urban; Bantle, Alexis; Krock, Bernd] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany; [Elbraechter, Malte] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Hafenstr 43, D-25992 List Auf Sylt, Germany; [Gottschling, Marc] Ludwig Maximilians Univ Munchen, Dept Biol Systemat Bot & Mykol, GeoBio Ctr, Menzinger Str 67, D-80638 Munich, Germany	Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; University of Munich	Gottschling, M (通讯作者)，Ludwig Maximilians Univ Munchen, Dept Biol Systemat Bot & Mykol, GeoBio Ctr, Menzinger Str 67, D-80638 Munich, Germany.	gottschling@bio.lmu.de	Krock, Bernd/ABB-7541-2020	Bantle, Alexis/0000-0001-8524-4132	PACES research program of the Alfred Wegener Institute as part of the Helmholtz Foundation initiative in Earth and Environment	PACES research program of the Alfred Wegener Institute as part of the Helmholtz Foundation initiative in Earth and Environment	We thank HansJoachim Esser (Munich) and WolfHenning Kusber (Berlin) for the discussion of dinophyte nomenclature and taxonomy. Annegret Muller and Thomas Max (AWI) are thanked for technical support. This work was supported by the PACES research program of the Alfred Wegener Institute as part of the Helmholtz Foundation initiative in Earth and Environment. ME gratefully acknowledges the ongoing support of the AlfredWegenerInstitut, Wattenmeerstation Sylt.	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J	Nishimura, T; Kuribara, Y; Fukuzawa, R; Mimura, K; Funaki, H; Tanaka, K; Watanabe, R; Uchida, H; Suzuki, T; Adachi, M				Nishimura, Tomohiro; Kuribara, Yuki; Fukuzawa, Ryo; Mimura, Katsuya; Funaki, Hiroshi; Tanaka, Kouki; Watanabe, Ryuichi; Uchida, Hajime; Suzuki, Toshiyuki; Adachi, Masao			First report of Alexandrium (Dinophyceae) associated with marine macroalgae off Japan: Diversity, distribution, and toxicity	HARMFUL ALGAE			English	Article						Alexandrium; Distribution; LC; MS; MS; Macroalgae-associated dinoflagellate; Molecular phylogeny; Non-motile cell	COASTAL AREAS; DINOFLAGELLATE GAMBIERDISCUS; PUTATIVE PALYTOXIN; SHELLFISH TOXINS; RESTING CYSTS; IDENTIFICATION; OSTREOPSIS; PHYLOGENY; GONYAULACALES; GONIODOMIN	Macroalgal samples were collected from coastal waters in subboreal to subtropical zones in Japan (< 3-30 m depths) and 32 clonal strains of non-motile dinoflagellate-like protists were established. Molecular phylogenetic analyses of the LSU rDNA D1/D2, SSU rDNA, ITS region, and concatenated SSU rDNA + LSU rDNA D1/D2 sequences revealed that the strains nested within the genus Alexandrium. They were separated into three novel phylotypes: Alexandrium spp. type 1, type 2, and type 3. Analysis of the concatenated sequences revealed that the most closely related species for the three phylotypes was A. ostenfeldii. Most cells from strains of the three phylotypes were non-motile and hemispherical to spherical in shape. The average diameters of the non-motile cells were between 35 and 39 mu m. Type 1 and type 2 were widely distributed in Japan from the temperate to subtropical zones, whereas type 3 was restricted to the temperate zone. Furthermore, type 2 was widespread from shallow to deep waters, whereas type 1 and type 3 were restricted to deep waters. Growth experiments in strains belonging to the three phylotypes revealed that the occurrence ratios of motile cells were very low (<= 1.1% of the total cells). The production of paralytic shellfish poisoning toxins, tetrodotoxin, and cyclic imines was assessed in strains belonging to the three phylotypes by LC/MS/MS analysis. The strains did not produce any of the toxins tested. The strains of the three phylotypes showed lethal toxicity to mice by intraperitoneal administration. To the best of our knowledge, this is the first study to report the existence of Alexandrium associated with marine macroalgae from Japan.	[Nishimura, Tomohiro; Kuribara, Yuki; Fukuzawa, Ryo; Mimura, Katsuya; Funaki, Hiroshi; Adachi, Masao] Kochi Univ, Fac Agr & Marine Sci, Lab Aquat Environm Sci LAQUES, 200 Otsu, Nankoku, Kochi 200, Japan; [Funaki, Hiroshi] Ehime Univ, United Grad Sch Agr Sci, 3-5-7 Tarumi, Matsuyama, Ehime 7908566, Japan; [Tanaka, Kouki] Kochi Univ, Usa Marine Biol Inst, 194 Inoshiri, Tosa, Kochi 7811164, Japan; [Watanabe, Ryuichi; Uchida, Hajime; Suzuki, Toshiyuki] Japan Fisheries Res & Educ Agcy, Fisheries Technol Inst, Kanazawa Ku, 2-12-4 Fukuura, Yokohama, Kanagawa 2368648, Japan; [Nishimura, Tomohiro] Cawthron Inst, 98 Halifax St East, Nelson 7010, New Zealand	Kochi University; Ehime University; Kochi University; Japan Fisheries Research & Education Agency (FRA)	Adachi, M (通讯作者)，Kochi Univ, Fac Agr & Marine Sci, Lab Aquat Environm Sci LAQUES, 200 Otsu, Nankoku, Kochi 200, Japan.	aquariumuirauqa@gmail.com; sonicthehedgehog1006@yahoo.co.jp; ryofuku1203@gmail.com; kmimura048@gmail.com; s17dre13@s.kochi-u.ac.jp; jm-kouki@kochi-u.ac.jp; rwatanabe@affrc.go.jp; huchida@affrc.go.jp; tsuzuki@affrc.go.jp; madachi@kochi-u.ac.jp	Watanabe, Ryuichi/GXA-1785-2022	Uchida, Hajime/0000-0002-7692-0095				Anderson DM, 2012, HARMFUL ALGAE, V14, P10, DOI 10.1016/j.hal.2011.10.012; [Anonymous], 2012, GEOHAB CORE RES PROJ; Boundy MJ, 2015, J CHROMATOGR A, V1387, P1, DOI 10.1016/j.chroma.2015.01.086; Bowen, 2003, FOCUS, V25, P18; Ciminiello P, 2006, ANAL CHEM, V78, P6153, DOI 10.1021/ac060250j; Hallegraeff GM, 2010, J PHYCOL, V46, P220, DOI 10.1111/j.1529-8817.2010.00815.x; Hoppenrath M., 2014, Marine benthic dinoflagellates-unveiling their worldwide biodiversity; John U, 2014, PROTIST, V165, P779, DOI 10.1016/j.protis.2014.10.001; KITA T, 1985, B MAR SCI, V37, P643; KITA T, 1988, Bulletin of Plankton Society of Japan, V35, P1; Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]; Lee JS, 1989, J APPL PHYCOL, V1, P147, DOI 10.1007/BF00003877; Lilly EL, 2005, HARMFUL ALGAE, V4, P1004, DOI 10.1016/j.hal.2005.02.001; Litaker RW, 2005, J PHYCOL, V41, P643, DOI 10.1111/j.1529-8817.2005.00075.x; Matsuda A., 1996, Harmful and Toxic Algal Blooms, P305; Molgo J., 2014, SEAFOOD FRESHWATER T, P974; MURAKAMI M, 1988, TETRAHEDRON LETT, V29, P1149, DOI 10.1016/S0040-4039(00)86674-5; MURATA M, 1990, J AM CHEM SOC, V112, P4380, DOI 10.1021/ja00167a040; Murray JS, 2020, HARMFUL ALGAE, V97, DOI 10.1016/j.hal.2020.101853; Murray SA, 2015, HARMFUL ALGAE, V49, P19, DOI 10.1016/j.hal.2015.08.003; Natsuike M, 2013, HARMFUL ALGAE, V27, P52, DOI 10.1016/j.hal.2013.04.006; Nishimura T, 2020, HARMFUL ALGAE, V96, DOI 10.1016/j.hal.2019.101687; Nishimura T, 2020, PHYCOL RES, V68, P30, DOI 10.1111/pre.12401; Nishimura T, 2018, PLANKTON BENTHOS RES, V13, P46, DOI 10.3800/pbr.13.46; Nishimura T, 2016, HARMFUL ALGAE, V52, P11, DOI 10.1016/j.hal.2015.11.018; Nishimura T, 2014, J PHYCOL, V50, P506, DOI 10.1111/jpy.12175; Nishimura T, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0060882; Nylander J.A. 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J	Lin, L; Wang, Q; Wu, HX				Lin, Ling; Wang, Qiong; Wu, Huixian			Study on the dinoflagellate cysts in ballast tank sediments of international vessels in Chinese shipyards	MARINE ENVIRONMENTAL RESEARCH			English	Article						Ballast tank sediments; Dinoflagellate cysts; Toxic and harmful dinoflagellates cysts	HARMFUL ALGAL BLOOMS; RESTING CYSTS; EAST-COAST; TRANSPORT; WATER; DISPERSAL; SEA	The problem of aquatic invasive species caused by discharge of ballast water and sediments from ships' ballast tanks has become extremely prominent. Seventeen sediment samples taken from ballast tanks of different ships docked in two Chinese shipyards were examined to identify the variety of resting dinoflagellate cysts. Twentytwo dinoflagellate cyst taxa were identified in these samples, including 11 photosynthetic and eleven heterotrophic species. These species represent 10 genera with the dominating assemblages of Alexandrium minutum, Scrippsiella acuminata, Lingulodinium polyedra, Protoperidinium sp. and Protoperidinium conicum. The total abundance of the dinoflagellate cysts ranged from 36 to 448 cysts g-1 dry weight, which demonstrated a wide range of diversity for different ships. It was observed that the number of taxa and concentrations of cysts in ballast tank sediments were slightly greater for ships performing short voyage than ships performing longer voyage. The compositions of dinoflagellate cysts in sediments from ships sailing diverse routes were more variable than those sailing same routes. Sediment moisture content proved to be well correlated to the total cyst abundance (r = 0.7422, P < 0.01). Furthermore, nine toxic and harmful species were observed from all sediment samples, which indicated a wide range of distribution and potential risk of harmful algal blooms if being discharged to Chinese waters. As a result, full attention should be drawn to the studies on dinoflagellate cysts in the ballast tank sediments from ships arriving at China, this is of great significance for preventing introduction of toxic and harmful dinoflagellate cysts and protecting native marine biodiversity.	[Lin, Ling; Wang, Qiong; Wu, Huixian] Shanghai Ocean Univ, Coll Marine Ecol & Environm, Shanghai 201306, Peoples R China; [Lin, Ling; Wang, Qiong; Wu, Huixian] Shanghai Ocean Univ, Ballast Water Detecting Lab, Shanghai 201306, Peoples R China	Shanghai Ocean University; Shanghai Ocean University	Wu, HX (通讯作者)，Shanghai Ocean Univ, Coll Marine Ecol & Environm, Shanghai 201306, Peoples R China.	hxwu@shou.edu.cn	Wu, Huixian/N-6353-2014		National Key Research and Development Program of China [2019YFC0810904]; Ship's High Technology Research Program of Ministry of Industry and Information Technology [[2019] 360]; Shanghai Science and Technology Commission Scientific Research Project [19DZ2292500]	National Key Research and Development Program of China(National Key Research & Development Program of China); Ship's High Technology Research Program of Ministry of Industry and Information Technology; Shanghai Science and Technology Commission Scientific Research Project	This study is a key project funded by the National Key Research and Development Program of China (No. 2019YFC0810904), The Ship's High Technology Research Program of Ministry of Industry and Information Technology (No. [2019] 360) and Shanghai Science and Technology Commission Scientific Research Project (No.19DZ2292500). We collectively thank the COSCO Shipping (Shanghai) Co., Ltd for providing us with samples. We are grateful to the captains and crews of the vessels that were embarked and sampled from. The constructive comments and suggestions of the reviewers are also greatly appreciated.	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Environ. Res.	JUL	2021	169								105348	10.1016/j.marenvres.2021.105348	http://dx.doi.org/10.1016/j.marenvres.2021.105348		MAY 2021	7	Environmental Sciences; Marine & Freshwater Biology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Toxicology	TM8ZE	33991936				2025-03-11	WOS:000675834600009
J	Zonneveld, KAF; Meilland, J; Donner, B; Versteegh, GJM				Zonneveld, Karin A. F.; Meilland, Julie; Donner, Barbara; Versteegh, Gerard J. M.			Export flux succession of dinoflagellate cysts and planktonic foraminifera in an active upwelling cell off Cape Blanc (NW Africa)	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						Dinoflagellate cysts; drifting traps; Eastern Boundary Upwelling Ecosystems; fluxes; Mauritania; planktonic foraminifera; succession	BLOOM DYNAMICS; SPECIES COMPOSITION; SURFACE SEDIMENTS; CARIACO BASIN; LIFE-CYCLE; SHELL FLUX; VARIABILITY; ENCYSTMENT; TRANSPORT; GULF	To better understand production, succession, excystment and transport of dinoflagellate cysts (dinocysts) and planktonic foraminifera in the upper water column, we investigated their fluxes during a 7-day survey in the active upwelling off Cape Blanc (NW Africa) in November 2018 with drifting traps at 100 m, 200 m and 400 m water depth. The survey covered a change from active upwelling to stratified conditions. Highest production of organic dinocysts and planktonic foraminifera was observed during active upwelling conditions and decreased drastically towards the end of the survey. Calcareous dinocysts appeared later during upwelling relaxation. Cytoplasm-bearing (full) dinocysts and foraminifera were produced in the water column above the traps (<100 m depth). Some of the empty dinocysts were resuspended, implying that sediments below the survey site contain both local and allochthonous cyst assemblages. This is the first demonstration that excystment in the upper water column is species-specific. Brigantedinium excysted in the upper water column before reaching deeper depths, whereas no upper water column excystment was observed for the other dinoflagellate species. Dinoflagellate and planktonic foraminifera associations showed a clear succession. During active upwelling, Echinidinium zonneveldiae, Brigantedinium spp., other peridinioids, Echinidinium spp., cysts of Pentapharsodinium dalei, 'other photosynthetic organic-walled dinocysts', Neogloboquadrina incompta and Globigerinella calida were collected. During upwelling relaxation, Lingulodinium machaerophorum was produced; and under stratified conditions Gymnodiniaceae cysts (G. microreticulatum, G. catenatum) and the foraminifera Globigerina bulloides and Orbulina universa were sampled. Apart from enhancing knowledge of these species, our observations allow more detailed reconstructions of upwelling history in the Cape Blanc region based on sedimentary archives using fossilized dinoflagellate and planktonic foraminifera assemblages.	[Zonneveld, Karin A. F.; Meilland, Julie; Donner, Barbara] Univ Bremen, Ctr Marine Environm Sci, MARUM, Leobener Str 8, D-28359 Bremen, Germany; [Zonneveld, Karin A. F.; Versteegh, Gerard J. M.] Univ Bremen, Geosci Dept, Klagenfurter Str, D-28359 Bremen, Germany; [Versteegh, Gerard J. M.] Jacobs Univ Bremen, Dept Phys & Earth Sci, Campus Ring 1, D-28759 Bremen, Germany; [Versteegh, Gerard J. M.] Helmholtz Zentrum Polar & Meeresforsch, Marine Geochem, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany	University of Bremen; University of Bremen; Jacobs University; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Zonneveld, KAF (通讯作者)，Univ Bremen, Ctr Marine Environm Sci, MARUM, Leobener Str 8, D-28359 Bremen, Germany.; Zonneveld, KAF (通讯作者)，Univ Bremen, Geosci Dept, Klagenfurter Str, D-28359 Bremen, Germany.	kzonneveld@marum.de	Meilland, Julie/AAE-9031-2021; Versteegh, Gerard J.M./H-2119-2011	Zonneveld, Karin/0000-0002-3390-1572; Versteegh, Gerard J.M./0000-0002-9320-3776; Meilland, Julie/0000-0001-8966-3115	Deutsche Forschungsgemeins chaft [17-87]	Deutsche Forschungsgemeins chaft(German Research Foundation (DFG))	This work was supported by the Deutsche Forschungsgemeins chaft [Mer/Met: 17-87].	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J. Phycol.	JAN 2	2022	57	1					29	47		10.1080/09670262.2021.1885066	http://dx.doi.org/10.1080/09670262.2021.1885066		MAY 2021	19	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	YX4QA		hybrid			2025-03-11	WOS:000648765900001
J	Ciurej, A; Bak, M				Ciurej, Agnieszka; Bak, Marta			<i>Cadosinopsis rehakovii</i> sp. nov., a new calcareous dinocyst from the Jurassic-Cretaceous transitional interval of the Western Tethys	PLOS ONE			English	Article							PIENINY KLIPPEN BELT; DINOFLAGELLATE CYSTS; DINOPHYCEAE; PHYLOGENY; SEDIMENTS; BOUNDARY	Variegated limestones, a transitional series between red, Upper Jurassic radiolarite and whitish, Lower Cretaceous Maiolica limestone in the Pieniny Klippen Belt deposits in the Polish part of the Western Carpathians, have yielded rich microfossil assemblages with common calcareous dinoflagellate resting stages, hereafter, dinocysts. We found an undescribed dinocyst species in red-greenish limestone of a deep water, pelagic habitat in the Branisko succession of the Pieniny Klippen Basin and named it Cadosinopsis rehakovii sp. nov. The new species has a spherical to oval calcareous test ranging from 34 to 59 mu m in length and 30 to 50 mu m in width, with two layered wall. The inner layer is built of coarse-thick, plate-shaped calcite crystals and is white in transmitted light. The outer layer is built of fibrous crystals, vitreous (transparent) in transmitted light. The aperture is wide and seen only in the inner layer. We compared the detailed morphological characteristics of the new species with another species from the same genus in the Jurassic and Cretaceous Tethyan deposits. Specimens have been measured, grouped and interpreted using cluster analysis, principal component analysis (PCA) and canonical variate analysis (CVA). Among them, the new species shows a resemblance in cross-section to other species of Cadosinopsis, C. nowaki Borza, 1984, and C. andrusovi Scheibner 1967, previously described in literature. However, the two species are easily distinguishable by some features. Cadosinopsis. nowaki is bigger in size (length from 50 to76 mu m and width from 43 to 67 mu m), its inner layer is thicker and consists of vitreous-sparite calcite, and it has less centrically located chamber. C. andrusovi is much bigger in size as its length ranges from 68 to 108 mu m and width ranges from 60 to 80 mu m, and the cyst is more oval and its chamber less spherical. The new species is the third Cadosinopsis species described in the Tethyan realm and about two hundred and sixty-first fossil species (morphotype) described in the world so far.	[Ciurej, Agnieszka] Pedag Univ Krakow, Inst Geog, Geol Dept, Krakow, Poland; [Bak, Marta] AGH Univ Sci & Technol, Fac Geol Geophys & Environm Protect, Krakow, Poland	University of the National Education Commission; AGH University of Krakow	Ciurej, A (通讯作者)，Pedag Univ Krakow, Inst Geog, Geol Dept, Krakow, Poland.	agnieszka.ciurej@up.krakow.pl	Ciurej, Agnieszka/HNS-7682-2023; Bak, Marta/A-5748-2017	Bak, Marta/0000-0001-9329-3540	Department of General Geology and Geotourism; Faculty of Geology, Geophysics and Environmental Protection, AGH University of Science and Technology in Krakow, Poland [16.16.140.315]; Ministry of Science and Higher Education [BN.610-408/PBU/2020]	Department of General Geology and Geotourism; Faculty of Geology, Geophysics and Environmental Protection, AGH University of Science and Technology in Krakow, Poland; Ministry of Science and Higher Education	The study was funded by the Statutory Funds of Department of General Geology and Geotourism, the Faculty of Geology, Geophysics and Environmental Protection, AGH University of Science and Technology in Krakow, Poland to Marta Bak (Project no. 16.16.140.315) and the Ministry of Science and Higher Education to Agnieszka Ciurej (Project BN.610-408/PBU/2020).	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F., 2005, Palaeontologische Zeitschrift, V79, P61	62	2	2	0	3	PUBLIC LIBRARY SCIENCE	SAN FRANCISCO	1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA	1932-6203			PLOS ONE	PLoS One	MAY 5	2021	16	5							e0249690	10.1371/journal.pone.0249690	http://dx.doi.org/10.1371/journal.pone.0249690			25	Multidisciplinary Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Science & Technology - Other Topics	SW6FV	33951040	gold, Green Published			2025-03-11	WOS:000664610500012
J	Rodríguez-Villegas, C; Lee, MR; Salgado, P; Figueroa, RI; Baldrich, A; Pérez-Santos, I; Tomasetti, SJ; Niklitschek, E; Díaz, M; Alvarez, G; Marín, SL; Seguel, M; Farías, L; Díaz, PA				Rodriguez-Villegas, Camilo; Lee, Matthew R.; Salgado, Pablo; Figueroa, Rosa, I; Baldrich, Angela; Perez-Santos, Ivan; Tomasetti, Stephen J.; Niklitschek, Edwin; Diaz, Manuel; Alvarez, Gonzalo; Marin, Sandra L.; Seguel, Miriam; Farias, Laura; Diaz, Patricio A.			Drivers of dinoflagellate benthic cyst assemblages in the NW Patagonian Fjords System and its adjacent oceanic shelf, with a focus on harmful species	SCIENCE OF THE TOTAL ENVIRONMENT			English	Article						Alexandrium catenella; Dinoflagellate resting cysts; Chilean Patagonia; Redox potential; Meiofauna	ALEXANDRIUM-CATENELLA DINOPHYCEAE; RESTING CYSTS; ALGAL BLOOMS; SURFACE SEDIMENTS; GERMINATION; PATTERNS; WATER; ABUNDANCE; DORMANCY; EXCYSTMENT	recent decades, the alteration of coastal food webs (via aquaculture, fishing, and leisure activities), nutrient loading, and an expansion of monitoring programs have prompted an apparent worldwide rise in Harmful Algae Blooms (HABs). Over this time, a parallel increase in HABs has also been observed in the Chilean southern austral region (Patagonia fjords). HAB species like Alexandrium catenella-responsible for Paralytic Shellfish Poisoning (PSP)-are of great public concern due to their negative socioeconomic impacts and significant northward geographical range expansion. Many toxic dinoflagellate species (like A. catenella) produce benthic resting cysts, yet a holistic understanding of the physical-chemical and biological conditions influencing the distributions of cysts in this region is lacking. In this study, wemeasured a combination of hydrographic (temperature, salinity, and dissolved oxygen) and sediment physical-chemical properties (temperature, pH and redox potential), in addition to meiofaunal abundances -as sediment bioturbators and potential cyst predators- to determine the factors influencing dinoflagellate cyst distribution, with emphasis on A. catenella in and around a "hotspot" area of southern Chile. An analysis of similarities (ANOSIM) test revealed significant differences (p < 0.011) in cyst assemblages between the fjords and oceanic environments. Permutational Analysis of Variance (PERMANOVA) showed significant effects of sediment temperature and silt proportion in explaining differences in the cyst assemblages. A generalized linear model (GLM) indicated that sediment temperature, silt/sand, anoxic conditions, and low abundances of Harpacticoida -a meiofauna herbivore group and potential bioturbator- are associated with the higher resting cyst abundances of the harmful species A. catenella. The implications for A. catenella resting cysts dynamics are discussed, highlighting physical-chemical and biological interactions and their potential for PSP outbreak initiation. (c) 2021 Elsevier B.V. All rights reserved.	[Rodriguez-Villegas, Camilo; Baldrich, Angela] Univ Los Lagos, Programa Doctorado Ciencias Menc Conservac & Mane, Camino Chinquihue Km 6, Puerto Montt, Chile; [Rodriguez-Villegas, Camilo; Lee, Matthew R.; Baldrich, Angela; Perez-Santos, Ivan; Niklitschek, Edwin; Diaz, Patricio A.] Univ Los Lagos, Ctr Imar, Casilla 557, Puerto Montt, Chile; [Salgado, Pablo] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Enrique Abello 0552, Punta Arenas, Chile; [Figueroa, Rosa, I] Inst Espanol Oceanog IEO, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain; [Perez-Santos, Ivan] Univ Concepcion, Ctr Invest Oceanog COPAS Sur Austral, Campus Concepcion, Concepcion, Chile; [Perez-Santos, Ivan] Ctr Invest Ecosistemas Patagonia CIEP, Coyhaique, Chile; [Tomasetti, Stephen J.] SUNY Stony Brook, Sch Marine & Atmospher Sci, Southampton, NY USA; [Diaz, Manuel] Univ Austral Chile, Inst Acuicultura, Programa Invest Pesquera, Puerto Montt, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Dept Acuicultura, Coquimbo, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, Fac Ciencias Mar, Ctr Invest & Desarrollo Tecnol Algas CIDTA, Larrondo 1281, Coquimbo, Chile; [Marin, Sandra L.] Univ Austral Chile, Inst Acuicultura, Puerto Montt, Chile; [Seguel, Miriam] Univ Austral Chile, Ctr Reg Anal Recursos & Medio Ambiente CERAM, Puerto Montt, Chile; [Farias, Laura] Univ Concepcion, Millennium Inst Coastal Social Ecol SECOS, Dept Oceanog, Concepcion, Chile; [Farias, Laura] Univ Concepcion, Ctr Climate Res & Resilience CR2, Concepcion, Chile; [Rodriguez-Villegas, Camilo; Baldrich, Angela; Diaz, Patricio A.] Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt, Chile	Universidad de Los Lagos; Universidad de Los Lagos; Instituto de Fomento Pesquero (Valparaiso); Spanish Institute of Oceanography; Universidad de Concepcion; State University of New York (SUNY) System; Stony Brook University; Universidad Austral de Chile; Universidad Catolica del Norte; Universidad Catolica del Norte; Universidad Austral de Chile; Universidad Austral de Chile; Universidad de Concepcion; Universidad de Concepcion; Universidad de Los Lagos	Díaz, PA (通讯作者)，Univ Los Lagos, Ctr Imar, Casilla 557, Puerto Montt, Chile.; Díaz, PA (通讯作者)，Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt, Chile.	patricio.diaz@ulagos.cl	Perez, Ivan/B-9321-2018; Salgado, Pablo/KMA-0636-2024; Díaz, Patricio/B-8128-2018; Niklitschek, Edwin/A-7066-2008; Díaz, Manuel/AAM-6225-2021; Alvarez, Gonzalo/W-1262-2017; Baldrich, Angela M./AAC-8054-2022; Rodriguez Villegas, Camilo/AAB-8563-2022; Figueroa, Rosa/M-7598-2015; Lee, Matthew/B-6360-2008	Baldrich, Angela M./0000-0002-2624-7357; , Ivan Perez-Santos/0000-0002-0184-1122; Rodriguez Villegas, Camilo/0000-0002-1429-2775; Figueroa, Rosa/0000-0001-9944-7993; Alvarez Vergara, Gonzalo/0000-0001-5812-1559; Tomasetti, Stephen/0000-0001-6947-5141; Lee, Matthew/0000-0001-9675-9908	Comite Oceanografico Nacional [CONAC24F, CONA C24F 18-06, CONA 24F 18-07]; International Cooperation Programme of the ANID [REDI170575]; ANID [ICN2019_015]; FONDAP [1511009]; Universidad de Los Lagos	Comite Oceanografico Nacional; International Cooperation Programme of the ANID; ANID; FONDAP; Universidad de Los Lagos	This work was funded by Comite Oceanografico Nacional [CONAC24F, 2018] by projects CONA C24F 18-06 (Patricio A. Diaz) and CONA 24F 18-07 (Laura Farias) and supported by REDI170575 from the International Cooperation Programme of the ANID. The authors also acknowledge the commander and crew of the AGS-61 "Cabo de Hornos" of the Chilean Navy for their support during the oceanographic campaign. The work of the Servicio Hidrografico y Oceanografico of Chilean Navy is also recognized. Laura Farias was funded by ANID by ICN2019_015 and FONDAP 1511009. We thank to Estrella Alcaman, Estrella Bello y Karen Sanzana for seawater sampling. Camilo RodriguezVillegas received a Ph.D. student fellowship from the Universidad de Los Lagos.	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SEP 1	2021	785								147378	10.1016/j.scitotenv.2021.147378	http://dx.doi.org/10.1016/j.scitotenv.2021.147378		MAY 2021	18	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	SP1SR		Green Published			2025-03-11	WOS:000659453200008
J	Hendrix, AM; Lefebvre, KA; Quakenbush, L; Bryan, A; Stimmelmayr, R; Sheffield, G; Wisswaesser, G; Willis, ML; Bowers, EK; Kendrick, P; Frame, E; Burbacher, T; Marcinek, DJ				Hendrix, Alicia M.; Lefebvre, Kathi A.; Quakenbush, Lori; Bryan, Anna; Stimmelmayr, Raphaela; Sheffield, Gay; Wisswaesser, Gabriel; Willis, Maryjean L.; Bowers, Emily K.; Kendrick, Preston; Frame, Elizabeth; Burbacher, Thomas; Marcinek, David J.			Ice seals as sentinels for algal toxin presence in the Pacific Arctic and subarctic marine ecosystems	MARINE MAMMAL SCIENCE			English	Article						domoic acid; exposure risks; harmful algal blooms; marine mammals; saxitoxin	DOMOIC-ACID; BERING-SEA; DINOFLAGELLATE TOXINS; CENTRAL CALIFORNIA; PSEUDO-NITZSCHIA; CLIMATE-CHANGE; BEARDED SEALS; RESTING CYSTS; CHUKCHI SEA; ALASKAN	Domoic acid (DA) and saxitoxin (STX)-producing algae are present in Alaskan seas, presenting exposure risks to marine mammals that may be increasing due to climate change. To investigate potential increases in exposure risks to four pagophilic ice seal species (Erignathus barbatus, bearded seals; Pusa hispida, ringed seals; Phoca largha, spotted seals; and Histriophoca fasciata, ribbon seals), this study analyzed samples from 998 seals harvested for subsistence purposes in western and northern Alaska during 2005-2019 for DA and STX. Both toxins were detected in bearded, ringed, and spotted seals, though no clinical signs of acute neurotoxicity were reported in harvested seals. Bearded seals had the highest prevalence of each toxin, followed by ringed seals. Bearded seal stomach content samples from the Bering Sea showed a significant increase in DA prevalence with time (logistic regression, p = .004). These findings are consistent with predicted northward expansion of DA-producing algae. A comparison of paired samples taken from the stomachs and colons of 15 seals found that colon content consistently had higher concentrations of both toxins. Collectively, these results suggest that ice seals, particularly bearded seals (benthic foraging specialists), are suitable sentinels for monitoring HAB prevalence in the Pacific Arctic and subarctic.	[Hendrix, Alicia M.; Burbacher, Thomas] Univ Washington, Dept Environm & Occupat Hlth Sci, Seattle, WA 98195 USA; [Lefebvre, Kathi A.; Wisswaesser, Gabriel; Willis, Maryjean L.; Bowers, Emily K.] NOAA, Environm & Fisheries Sci Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, 2725 Montlake Blvd East, Seattle, WA 98125 USA; [Quakenbush, Lori; Bryan, Anna] Alaska Dept Fish & Game, Arctic Marine Mammal Program, Fairbanks, AK USA; [Stimmelmayr, Raphaela] North Slope Borough Dept Wildlife Management, Utqiagvik, AK USA; [Stimmelmayr, Raphaela] Univ Alaska Fairbanks, Inst Arctic Biol, Fairbanks, AK USA; [Sheffield, Gay] Univ Alaska Fairbanks, Alaska Sea Grant Marine Advisory Program, Nome, AK USA; [Kendrick, Preston; Marcinek, David J.] Univ Washington, Sch Med, Dept Radiol, Seattle, WA 98195 USA; [Kendrick, Preston; Marcinek, David J.] Univ Washington, Sch Med, Dept Pathol, Seattle, WA 98195 USA; [Kendrick, Preston; Marcinek, David J.] Univ Washington, Sch Med, Dept Bioengn, Seattle, WA USA; [Frame, Elizabeth] King Cty Environm Lab, Aquat Toxicol Unit, Seattle, WA USA	University of Washington; University of Washington Seattle; National Oceanic Atmospheric Admin (NOAA) - USA; Alaska Department of Fish & Game; University of Alaska System; University of Alaska Fairbanks; University of Alaska System; University of Alaska Fairbanks; University of Washington; University of Washington Seattle; University of Washington; University of Washington Seattle; University of Washington; University of Washington Seattle	Lefebvre, KA (通讯作者)，NOAA, Environm & Fisheries Sci Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, 2725 Montlake Blvd East, Seattle, WA 98125 USA.	kathi.lefebvre@noaa.gov		Hendrix, Alicia/0000-0003-3897-1788	Marine Mammal Commission; National Institute of Environmental Health Sciences [ES021930, ES030319, T32ES007032]; National Oceanic and Atmospheric Administration [2009SOC-ice seals, F12AF01265, NA05NMF4391187, NA08NMF4390544, NA11NMF4390200, NA16NMF4390029, NA16NMF4720079, NA20NOS4780195]; National Science Foundation [OCE-1314088, OCE-1839041]; North Slope Borough Department of Wildlife Management; Qualified outer continental shelf oil and gas revenues	Marine Mammal Commission; National Institute of Environmental Health Sciences(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Environmental Health Sciences (NIEHS)); National Oceanic and Atmospheric Administration(National Oceanic Atmospheric Admin (NOAA) - USA); National Science Foundation(National Science Foundation (NSF)); North Slope Borough Department of Wildlife Management; Qualified outer continental shelf oil and gas revenues	Marine Mammal Commission; National Institute of Environmental Health Sciences, Grant/Award Numbers: ES021930, ES030319, T32ES007032; National Oceanic and Atmospheric Administration, Grant/Award Numbers: 2009SOC-ice seals, F12AF01265, NA05NMF4391187, NA08NMF4390544, NA11NMF4390200, NA16NMF4390029, NA16NMF4720079, NA20NOS4780195; 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Mamm. Sci.	OCT	2021	37	4					1292	1308		10.1111/mms.12822	http://dx.doi.org/10.1111/mms.12822		MAY 2021	17	Marine & Freshwater Biology; Zoology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Zoology	UZ5ZX	34690417	Green Published, hybrid			2025-03-11	WOS:000646236500001
J	Mertens, KN; Takano, Y; Meyvisch, P; Carbonell-Moore, MC; Chomérat, N; Bogus, K; Leitao, M				Mertens, Kenneth Neil; Takano, Yoshihito; Meyvisch, Pjotr; Carbonell-Moore, M. Consuelo; Chomerat, Nicolas; Bogus, Kara; Leitao, Maria			Morpho-molecular and spectroscopic characterization of the freshwater dinoflagellate <i>Unruhdinium penardii</i> var. <i>robustum</i> (Kryptoperidiniaceae, Peridiniales), blooming in the Loir River, France	NOVA HEDWIGIA			English	Article						dinotom; division cysts; Fourier transform infrared spectroscopy; freshwater; mucus; plate overlap	SP-NOV PERIDINIALES; DIATOM ENDOSYMBIONT; STEROL COMPOSITION; RESTING CYSTS; 1ST RECORD; DINOPHYCEAE; ULTRASTRUCTURE; PHYLOGENETICS; PERFORMANCE; RESERVOIR	A freshwater dinoflagellate formed extensive red tides in the Loir River, France in September 2018. Morphological observations using light microscopy and field emission scanning electron microscopy identified the causative organism as the "dinotom" Unruhdinium penardii var. robustum, with a tabulation of Po, x, 4', 0a, 6 '', 5c (or t+4c), 5s, 5 ''', 2 ''''. The thecal plate overlap of the variety is documented for the first time. Division cysts were also observed in the plankton assemblage. Sequences obtained from the vegetative cells of small subunit (SSU) and large subunit (LSU) ribosomal DNA (rDNA) are identical to previously published sequences from Japan. This is the first unambiguous identification from French waters of this species and its variety. A SSU rDNA sequence is also reported for the diatom endosymbiont, which is close to the diatom genus Discostella. Fourier transform infrared spectroscopic analysis showed that division cysts and thecae of U. penardii var. robustum are cellulose-like, but with a higher degree of cross-linking than in microcrystalline cellulose and with a more complex macromolecular buildup.	[Mertens, Kenneth Neil; Chomerat, Nicolas] IFREMER, LITTORAL, F-29900 Concarneau, France; [Takano, Yoshihito] Kochi Univ, Fac Sci & Technol, Otsu 200, Nankoku, Kochi 7838502, Japan; [Meyvisch, Pjotr] Univ Ghent, Dept Geol, Krijgslaan 281, B-9000 Ghent, Belgium; [Carbonell-Moore, M. Consuelo] Oregon State Univ, Coll Agr Sci, Dept Bot & Plant Pathol, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Bogus, Kara] Univ Exeter, Camborne Sch Mines, Penryn TR10 9AH, Cornwall, England; [Leitao, Maria] Bi Eau, Angers, France	Ifremer; Kochi University; Ghent University; Oregon State University; University of Exeter	Mertens, KN (通讯作者)，IFREMER, LITTORAL, F-29900 Concarneau, France.	kenneth.mertens@ifremer.fr	Meyvisch, Pjotr/ABB-1527-2021; Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015	Chomerat, Nicolas/0000-0001-9691-6344; Meyvisch, Pjotr/0000-0002-1270-2152; Bogus, Kara/0000-0003-4690-0576; Mertens, Kenneth/0000-0003-2005-9483	Regional Council of Brittany; General Council of Finistere; urban community of Concarneau-Cornouaille-Agglomeration	Regional Council of Brittany(Region Bretagne); General Council of Finistere(Region Bretagne); urban community of Concarneau-Cornouaille-Agglomeration	The Regional Council of Brittany, the General Council of Finistere and the urban community of Concarneau-Cornouaille-Agglomeration are acknowledged for the funding of the Sigma 300 FE-SEM of the station of Marine Biology in Concarneau. We gratefully acknowledge the Center for Advanced Marine Core Research, Kochi University for using their DNA auto-sequencer ABI 3130 Genetic Analyzer and acknowledgements to Dr. Yurika Ujiie for help with its operation. Cecilia Satta, Karin Zonneveld and Gerard Versteegh are thanked for interesting discussions. Laetitia Marchand is kindly thanked for providing the cellulose standard. Two anonymous reviewers are acknowledged for useful comments that improved the manuscript.	Amo M, 2010, GEOCHEM J, V44, P225, DOI 10.2343/geochemj.1.0063; Anderson P., 2003, Monographs on Oceanographic Methodology, V11, P99; [Anonymous], PLOS BIOL; Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J	Lim, YK; Park, BS; Kim, JH; Baek, SS; Baek, SH				Lim, Young Kyun; Park, Bum Soo; Kim, Jin Ho; Baek, Sang-Soo; Baek, Seung Ho			Effect of marine heatwaves on bloom formation of the harmful dinoflagellate <i>Cochlodinium polykrikoides</i>: Two sides of the same coin?	HARMFUL ALGAE			English	Article						Heatwaves; High water temperature; Stratification; HABs; Cochlodinium polykrikoides; Intraspecific physiological characteristics	KOREAN COASTAL WATERS; SEA-SURFACE TEMPERATURE; LOWER CHESAPEAKE BAY; RED TIDE; VERTICAL MIGRATION; ALGAL BLOOMS; HEAT WAVES; MARGALEFIDINIUM-POLYKRIKOIDES; PHYLOGENETIC-RELATIONSHIPS; TEMPORARY CYSTS	In 2018, the bloom of harmful dinoflagellate Cochlodinium polykrikoides occurred under abnormally high water temperature (WT) conditions caused by heatwaves in Korean coastal water (KCW). To better understand C. polykrikoides bloom at high WTs in 2018, we conducted field survey and laboratory experiments (the physiological and genetic differences between the two strains, CP2013 and CP2018). The heatwave increased the WT from 24.1 degrees C to 29.2 degrees C for two weeks, leading to strong stratification even in mid July (p < 0.01, Chi square = 94.656, Kruskal-Wallis test). Under early stratification conditions, patch blooms formed more earlier than the average outbreak in the last 17 years in KCW, despite high WT reaching 30 degrees C. In laboratory experiments, although there were no genetic differences in the LSU rDNA, both strains showed a significant different growth response to high WTs; above 28 degrees C, CP2013 did not survive, but CP2018 was able to grow, suggesting that CP2018 had potential growth capacity at high WTs. However, the growth rate and yield of the culture (CP2018) were lowered at 30 degrees C. Also, the blooms of C. polykrikoides in 2018 lasted only 3 weeks, which is unusual short compared to the average duration since 2002. The negative correlation between the average WT and duration of C. polykrikoides bloom in previous 17 years (R-2 = 0.518, p < 0.01) supports that high WT approaching 30 degrees C is not favorable for C. polykrikoides in KCW. Thus, our findings indicated that in relation to heatwaves, early stratification condition plays a critical role in developing C. polykrikoides blooms, but maintaining bloom are negatively affected under high WT conditions.	[Lim, Young Kyun; Kim, Jin Ho; Baek, Seung Ho] KIOST Korea Inst Ocean Sci & Technol, Risk Assessment Res Ctr, Geoje 53201, South Korea; [Lim, Young Kyun; Baek, Seung Ho] Univ Sci & Technol, Dept Ocean Sci, Daejeon 34113, South Korea; [Park, Bum Soo] KIOST Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan 49111, South Korea; [Kim, Jin Ho] Natl Forens Serv, DNA Anal Div, Seoul 08036, South Korea; [Baek, Sang-Soo] Ulsan Natl Inst Sci & Technol, Sch Urban & Environm Engn, Ulsan 44919, South Korea	Korea Institute of Ocean Science & Technology (KIOST); University of Science & Technology (UST); Korea Institute of Ocean Science & Technology (KIOST); National Forensic Service; Ulsan National Institute of Science & Technology (UNIST)	Baek, SH (通讯作者)，Korea Inst Ocean Sci & Technol, Geoje 53201, South Korea.	baeksh@kiost.ac.kr	Park, Bum/W-3178-2017; Baek, SangSoo/LFT-3581-2024	BAEK, SEUNG HO/0000-0002-5402-2518	Basic Core Technology Development Program for the Oceans; Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning [NRF2016M1A5A1027456]; KIOST projects [PE99912]	Basic Core Technology Development Program for the Oceans; Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning(National Research Foundation of KoreaMinistry of Science, ICT & Future Planning, Republic of Korea); KIOST projects	This research was supported by the Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) funded by the Ministry of Science, ICT & Future Planning [grant number NRF2016M1A5A1027456] , and KIOST projects (PE99912) .	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J	Tapics, T; Gregory-Eaves, I; Huot, Y				Tapics, Tara; Gregory-Eaves, Irene; Huot, Yannick			The private life of <i>Cystodinium</i>: <i>in situ</i> observation of its attachments and population dynamics	JOURNAL OF PLANKTON RESEARCH			English	Article						Cystodinium; dinoflagellates; cysts; parasites; freshwater; imaging flow cytometer; vegetative cysts; non-motile stage; temporary cysts; coccoid stage	NUTRITIONAL STRATEGIES; BATAVIENSE	Phytoplankton images were collected using an Imaging Flow Cytobot moored in the mesotrophic lake Lac Montjoie (Quebec, Canada). Cystodinium-an unusual dinoflagellate genus-was found during manual classification of the images into taxonomic groups while building an automated classifier. Cystodinium's particularity is that while it can take a typical motile dinoflagellate form, it is thought to exist primarily as an immotile photosynthetically competent parasitic cyst in the shape of a crescent moon. Observations presented here are of this immotile lunate cyst. Manually classified images revealed that the majority of the Cystodinium found (86%) were attached to other microalgae or detrital material while the rest were unattached. The established auto-classifier was only able to correctly identify unattached Cystodinium images and thus was used to generate time series as cells per 100 mL for the unattached cell subset. Our observations, coupled with a literature review, lead us to question the parasitic nature of this taxonomic group.	[Tapics, Tara; Huot, Yannick] Univ Sherbrooke, Dept Geomat Appl, 2500 Boul Univ, Sherbrooke, PQ J1K 2R1, Canada; [Gregory-Eaves, Irene] McGill Univ, Dept Biol, 845 Sherbrooke St West, Montreal, PQ H3A 0G4, Canada	University of Sherbrooke	Tapics, T (通讯作者)，Univ Sherbrooke, Dept Geomat Appl, 2500 Boul Univ, Sherbrooke, PQ J1K 2R1, Canada.	Tara.Tapics@usherbrooke.ca	Gregory-Eaves, Irene/U-9325-2019	Tapics, Tara/0000-0003-4217-7632	Canada Research Chair; NSERC; Canada Foundation for Innovation grant; FRQNT	Canada Research Chair(Natural Resources CanadaCanadian Forest ServiceCanada Research Chairs); NSERC(Natural Sciences and Engineering Research Council of Canada (NSERC)); Canada Foundation for Innovation grant(Canada Foundation for Innovation); FRQNT(Fonds de recherche du Quebec (FRQ)Fonds de recherche du Quebec - Nature et technologies (FRQNT))	Canada Research Chair and NSERC Discovery grants; Canada Foundation for Innovation grant (to Y.H.); FRQNT-funded strategic cluster known as the Groupe de Recherche Interuniversitaire en Limnologie (GRIL).	BAUMEISTER WILLY, 1957, ARCH PROTISKENKUNDE, V102, P21; Cachon J., 1987, Botanical Monographs (Oxford), V21, P571; Gómez F, 2012, SYST BIODIVERS, V10, P267, DOI 10.1080/14772000.2012.721021; Hoppenrath M, 2017, MAR BIODIVERS, V47, P381, DOI 10.1007/s12526-016-0471-8; Klebs G, 1912, FLAGELLATEN UND ALGE; Olson RJ, 2007, LIMNOL OCEANOGR-METH, V5, P195, DOI 10.4319/lom.2007.5.195; PFIESTER LA, 1980, PHYCOLOGIA, V19, P178, DOI 10.2216/i0031-8884-19-3-178.1; Prescott G.W., 1962, ALGAE W GREAT LAKES; Sanders RW, 2011, J EUKARYOT MICROBIOL, V58, P181, DOI 10.1111/j.1550-7408.2011.00543.x; SCHNEPF E, 1992, EUR J PROTISTOL, V28, P3, DOI 10.1016/S0932-4739(11)80315-9; Sosik HM, 2007, LIMNOL OCEANOGR-METH, V5, P204, DOI 10.4319/lom.2007.5.204; Stoecker DK, 1999, J EUKARYOT MICROBIOL, V46, P397, DOI 10.1111/j.1550-7408.1999.tb04619.x; Taylor F.J.R., 1987, Botanical Monographs (Oxford), V21, P1; Taylor F. J. R, 1987, BIOL DINOFLAGELLATES, P23; THOMPSON R H, 1984, Transactions of the Kansas Academy of Science, V87, P83, DOI 10.2307/3627841; TIMPANO P, 1985, J PHYCOL, V21, P56	16	2	3	1	6	OXFORD UNIV PRESS	OXFORD	GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND	0142-7873	1464-3774		J PLANKTON RES	J. Plankton Res.	MAY-JUN	2021	43	3					492	496		10.1093/plankt/fbab025	http://dx.doi.org/10.1093/plankt/fbab025		APR 2021	5	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	SS1EP	34084089	hybrid, Green Published			2025-03-11	WOS:000661484700012
J	Karlson, B; Andersen, P; Arneborg, L; Cembella, A; Eikrem, W; John, U; West, JJ; Klemm, K; Kobos, J; Lehtinen, S; Lundholm, N; Mazur-Marzec, H; Naustvoll, L; Poelman, M; Provoost, P; De Rijcke, M; Suikkanen, S				Karlson, Bengt; Andersen, Per; Arneborg, Lars; Cembella, Allan; Eikrem, Wenche; John, Uwe; West, Jennifer Joy; Klemm, Kerstin; Kobos, Justyna; Lehtinen, Sirpa; Lundholm, Nina; Mazur-Marzec, Hanna; Naustvoll, Lars; Poelman, Marnix; Provoost, Pieter; De Rijcke, Maarten; Suikkanen, Sanna			Harmful algal blooms and their effects in coastal seas of Northern Europe	HARMFUL ALGAE			English	Review						Phytoplankton; Harmful algae; Phycotoxins; Aquaculture; Bivalve shellfish; Fish mortality	DIARRHETIC SHELLFISH TOXINS; PSEUDO-NITZSCHIA-SERIATA; DOMOIC ACID PRODUCTION; PHAEOCYSTIS-POUCHETII BLOOMS; PRYMNESIUM-PARVUM CARTER; KARENIA-MIKIMOTOI BLOOM; PROTOCERATIUM-RETICULATUM; GERMAN BIGHT; GYRODINIUM-AUREOLUM; KING SCALLOP	Harmful algal blooms (HAB) are recurrent phenomena in northern Europe along the coasts of the Baltic Sea, Kattegat-Skagerrak, eastern North Sea, Norwegian Sea and the Barents Sea. These HABs have caused occasional massive losses for the aquaculture industry and have chronically affected socioeconomic interests in several ways. This status review gives an overview of historical HAB events and summarises reports to the Harmful Algae Event Database from 1986 to the end of year 2019 and observations made in long term monitoring programmes of potentially harmful phytoplankton and of phycotoxins in bivalve shellfish. Major HAB taxa causing fish mortalities in the region include blooms of the prymnesiophyte Chrysochromulina leadbeateri in northern Norway in 1991 and 2019, resulting in huge economic losses for fish farmers. A bloom of the prymesiophyte Prymnesium polylepis (syn. Chrysochromulina polylepis) in the Kattegat-Skagerrak in 1988 was ecosystem disruptive. Blooms of the prymnesiophyte Phaeocystis spp. have caused accumulations of foam on beaches in the southwestern North Sea and Wadden Sea coasts and shellfish mortality has been linked to their occurrence. Mortality of shellfish linked to HAB events has been observed in estuarine waters associated with influx of water from the southern North Sea. The first bloom of the dictyochophyte genus Pseudochattonella was observed in 1998, and since then such blooms have been observed in high cell densities in spring causing fish mortalities some years. Dinoflagellates, primarily Dinophysis spp., intermittently yield concentrations of Diarrhetic Shellfish Toxins (DST) in blue mussels, Mytilus edulis, above regulatory limits along the coasts of Norway, Denmark and the Swedish west coast. On average, DST levels in shellfish have decreased along the Swedish and Norwegian Skagerrak coasts since approximately 2006, coinciding with a decrease in the cell abundance of D. acuta. Among dinoflagellates, Alexandrium species are the major source of Paralytic Shellfish Toxins (PST) in the region. PST concentrations above regulatory levels were rare in the Skagerrak-Kattegat during the three decadal review period, but frequent and often abundant findings of Alexandrium resting cysts in surface sediments indicate a high potential risk for blooms. PST levels often above regulatory limits along the west coast of Norway are associated with A. catenella (ribotype Group 1) as the main toxin producer. Other Alexandrium species, such as A. ostenfeldii and A. minutum, are capable of producing PST among some populations but are usually not associated with PSP events in the region. The cell abundance of A. pseudogonyaulax, a producer of the ichthyotoxin goniodomin (GD), has increased in the Skagerrak-Kattegat since 2010, and may constitute an emerging threat. The dinoflagellate Azadinium spp. have been unequivocally linked to the presence of azaspiracid toxins (AZT) responsible for Azaspiracid Shellfish Poisoning (AZP) in northern Europe. These toxins were detected in bivalve shellfish at concentrations above regulatory limits for the first time in Norway in blue mussels in 2005 and in Sweden in blue mussels and oysters (Ostrea edulis and Crassostrea gigas) in 2018. Certain members of the diatom genus Pseudo-nitzschia produce the neurotoxin domoic acid and analogs known as Amnesic Shellfish Toxins (AST). Blooms of Pseudo-nitzschia were common in the North Sea and the Skagerrak-Kattegat, but levels of AST in bivalve shellfish were rarely above regulatory limits during the review period. Summer cyanobacteria blooms in the Baltic Sea are a concern mainly for tourism by causing massive fouling of bathing water and beaches. Some of the cyano-bacteria produce toxins, e.g. Nodularia spumigena, producer of nodularin, which may be a human health problem and cause occasional dog mortalities. Coastal and shelf sea regions in northern Europe provide a key supply of seafood, socioeconomic well-being and ecosystem services. Increasing anthropogenic influence and climate change create environmental stressors causing shifts in the biogeography and intensity of HABs. Continued monitoring of HAB and phycotoxins and the operation of historical databases such as HAEDAT provide not only an ongoing status report but also provide a way to interpret causes and mechanisms of HABs.	[Karlson, Bengt; Arneborg, Lars] Swedish Meteorol & Hydrol Inst, Res & Dev, Oceanog, Sven Kallfelts Gata 15, SE-42671 Vastra Frolunda, Sweden; [Andersen, Per] Aarhus Univ, Marine Ecol, Vejlsovej 25, DK-8600 Silkeborg, Denmark; [Cembella, Allan; John, Uwe; Klemm, Kerstin] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany; [Eikrem, Wenche] Univ Oslo, Dept Biosci, POB 1066 Blindern, N-0316 Oslo, Norway; [Eikrem, Wenche] Norwegian Inst Water Res, Gaustadalleen 21, N-0349 Oslo, Norway; [John, Uwe] Helmholtz Inst Funct Marine Biodivers, Ammerlander Heerstr 231, D-26129 Oldenburg, Germany; [West, Jennifer Joy] CICERO Ctr Int Climate Res, POB 1129, N-0318 Oslo, Norway; [Kobos, Justyna; Mazur-Marzec, Hanna] Univ Gdansk, Inst Oceanog, Div Marine Biotechnol, Marszalka Pilsudskiego 46, PL-81378 Gdynia, Poland; [Lehtinen, Sirpa; Suikkanen, Sanna] Finnish Environm Inst SYKE, Marine Res Ctr, Agnes Sjobergin Katu 2, Helsinki 00790, Finland; [Lundholm, Nina] Univ Copenhagen, Nat Hist Museum Denmark, Oster Farimagsgade 5, DK-1353 Copenhagen K, Denmark; [Naustvoll, Lars] Inst Marine Res, Flodevigen Marine Res Stn, N-4817 His, Norway; [Poelman, Marnix] Wageningen Marine Res, Wageningen UR, POB 77, NL-4400 AB Yerseke, Netherlands; [Provoost, Pieter] Project Off IODE, Intergovt Oceanog Commiss, Wandelaarkaai 7-61, B-8400 Oostende, Belgium; [De Rijcke, Maarten] Flanders Marine Inst VLIZ, Wandelaarkaai 7, B-8400 Oostende, Belgium	Swedish Meteorological & Hydrological Institute; Aarhus University; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; University of Oslo; Norwegian Institute for Water Research (NIVA); Fahrenheit Universities; University of Gdansk; Finnish Environment Institute; University of Copenhagen; Institute of Marine Research - Norway; Wageningen University & Research	Karlson, B (通讯作者)，Swedish Meteorol & Hydrol Inst, Res & Dev, Oceanog, Sven Kallfelts Gata 15, SE-42671 Vastra Frolunda, Sweden.	bengt.karlson@smhi.se	Mazur-Marzec, Hanna/J-8511-2017; De Rijcke, Maarten/HDM-7218-2022; Karlson, Bengt/HII-5550-2022; Lundholm, Nina/AAY-6249-2020; Lundholm, Nina/A-4856-2013; John, Uwe/S-3009-2016	De Rijcke, Maarten/0000-0002-0899-8122; Andersen, Per/0000-0002-5490-6436; Lundholm, Nina/0000-0002-2035-1997; Arneborg, Lars/0000-0003-0248-8110; Naustvoll, Lars johan/0000-0003-0552-122X; John, Uwe/0000-0002-1297-4086; Karlson, Bengt/0000-0002-7524-3504; Mazur-Marzec, Hanna/0000-0002-6526-4045; Cembella, Allan/0000-0002-1297-2240; Lehtinen, Sirpa/0000-0001-7784-8497; Poelman, Marnix/0000-0002-0074-9586	EPA; ANR; DLR/BMBF; UEFISCDI; RCN; FORMAS; European Union [690462]; Swedish Research Council Formas [2017-1737]	EPA(United States Environmental Protection Agency); ANR(Agence Nationale de la Recherche (ANR)); DLR/BMBF(Helmholtz AssociationGerman Aerospace Centre (DLR)Federal Ministry of Education & Research (BMBF)); UEFISCDI(Consiliul National al Cercetarii Stiintifice (CNCS)Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii (UEFISCDI)); RCN; FORMAS(Swedish Research Council Formas); European Union(European Union (EU)); Swedish Research Council Formas(Swedish Research Council Formas)	The funding of monitoring programs by various agencies listed in supplementary Tables 1 and 2 was essential to completion of this review. This contribution is a component of the project CoCliME which is part of ERA4CS, an ERA-NET initiated by JPI Climate, and funded by EPA (IE), ANR (FR), DLR/BMBF (DE), UEFISCDI (RO), RCN (NO) and FORMAS (SE), with co-funding by the European Union (Grant 690462). CoCliME funding from Swedish Research Council Formas, Grant Number 2017-1737 is greatly appreciated.	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J	McKenzie, CH; Bates, SS; Martin, JL; Haigh, N; Howland, KL; Lewis, NI; Locke, A; Peña, A; Poulin, M; Rourke, WA; Scarratt, MG; Starr, M; Wells, T				McKenzie, Cynthia H.; Bates, Stephen S.; Martin, Jennifer L.; Haigh, Nicola; Howland, Kimberly L.; Lewis, Nancy I.; Locke, Andrea; Pena, Angelica; Poulin, Michel; Rourke, Wade A.; Scarratt, Michael G.; Starr, Michel; Wells, Terri			Three decades of Canadian marine harmful algal events: Phytoplankton and phycotoxins of concern to human and ecosystem health	HARMFUL ALGAE			English	Article						Phycotoxin; Harmful algal event; Saxitoxin; Domoic acid; Okadaic acid; HAEDAT; Alexandrium; Pseudo-nitzschia; Dinophysis; Chaetoceros; Heterosigma; Northeast Pacific; Northwest Atlantic; Arctic Canada	PSEUDO-NITZSCHIA PERAGALLO; TAMARENSE RESTING CYSTS; BRITISH-COLUMBIA; DOMOIC ACID; CHAETOCEROS-CONCAVICORNIS; ALEXANDRIUM-TAMARENSE; DINOFLAGELLATE TOXINS; ENVIRONMENTAL-FACTORS; SPATIAL-DISTRIBUTION; PROBABLE CAUSE	Spatial and temporal trends of marine harmful algal events in Canada over the last three decades were examined using data from the Harmful Algal Event Database (HAEDAT). This database contains the most complete record of algal blooms, phycotoxins and shellfish harvesting area closures in Canada since 1987. This 30-year review of 593 Canadian HAEDAT records from 1988 to 2017, together with other Canadian data and publications, shows that recurring harmful algal events have been widespread throughout both the Atlantic and Pacific coastal regions. The 367 paralytic shellfish toxin (PST) reports revealed annual and frequent recurrence throughout both the Atlantic and Pacific regions, including multi-year PST events in the Bay of Fundy, the Estuary and Gulf of St. Lawrence and the Strait of Georgia. The 70 amnesic shellfish toxin (AST) records revealed no recognizable trend, as these events were usually area specific and did not recur annually. The increasing frequency of diarrhetic shellfish toxin (DST) events over the period of this review, in total 59 records, can be at least partially explained by increased sampling effort. Marine species mortalities caused by harmful algae (including diatoms, dictyochophytes, dinoflagellates, and raphidophytes), were a common occurrence in the Pacific region (87 reports), but have been reported much less frequently in the Atlantic region (10 reports). Notable Canadian records contained in HAEDAT include the first detection worldwide of amnesic shellfish poisoning (ASP), attributed to the production of domoic acid (an AST) by a diatom (Pseudo-nitzschia multiseries) in Prince Edward Island in 1987. The first proven case of diarrhetic shellfish poisoning (DSP) in Canada and North America was recorded in 1990, and the first closures of shellfish harvesting due to DST (associated with the presence of Dinophysis norvegica) occurred in Nova Scotia in 1992, followed by closures in Newfoundland and Labrador in 1993. In 2008, mass mortalities of fishes, birds and mammals in the St. Lawrence Estuary were caused by Alexandrium catenella and high levels of PST. During 2015, the Pacific coast experienced a large algal bloom that extended from California to Alaska. It resulted in the closure of several shellfish harvesting areas in British Columbia due to AST, produced by Pseudo-nitzschia australis. Data from the Canadian Arctic coast is not included in HAEDAT. However, because of the emerging importance of climate change and increased vessel traffic in the Arctic, information on the occurrence of harmful algal species (pelagic and sympagic = sea ice-associated) in that region was compiled from relevant literature and data. The results suggest that these taxa may be more widespread than previously thought in the Canadian Arctic. Information in HAEDAT was not always robust or complete enough to provide conclusions about temporal trends. Compilation of spatial and temporal information from HAEDAT and other records is	[McKenzie, Cynthia H.] Fisheries & Oceans Canada, Northwest Atlant Fisheries Ctr, St John, NF A1C 5X1, Canada; [Bates, Stephen S.] Fisheries & Oceans Canada, Gulf Fisheries Ctr, Moncton, NB E1C 9B6, Canada; [Martin, Jennifer L.] St Andrews Biol Stn, Fisheries & Oceans Canada, St Andrews, NB E5B 0E4, Canada; [Haigh, Nicola] Microthalassia Consultants Inc, Nanaimo, BC V9T IT4, Canada; [Howland, Kimberly L.] Fisheries & Oceans Canada, Inst Freshwater, Winnipeg, MB R3T 2N6, Canada; [Lewis, Nancy I.] Natl Res Council Canada, Biotoxin Metrol, Halifax, NS B3H 3Z1, Canada; [Locke, Andrea; Pena, Angelica] Fisheries & Oceans Canada, Inst Ocean Sci, Sidney, BC V8L 4B2, Canada; [Poulin, Michel] Canadian Museum Nat, Res & Collect, Ottawa, ON K1P 6P4, Canada; [Rourke, Wade A.] Univ Quebec Rimouski, Inst Sci Mer Rimouski, Rimouski, PQ G5L 3A1, Canada; [Rourke, Wade A.] Dartmouth Lab, Canadian Food Inspect Agcy, Dartmouth, NS B3B IY9, Canada; [Scarratt, Michael G.; Starr, Michel] Fisheries & Oceans Canada, Maurice Lamontagne Inst, Mont Joli, PQ G5H 3Z4, Canada	Fisheries & Oceans Canada; Fisheries & Oceans Canada; Fisheries & Oceans Canada; Fisheries & Oceans Canada; National Research Council Canada; International Business Machines (IBM); IBM Canada; Fisheries & Oceans Canada; University of Quebec; Universite du Quebec a Rimouski; Canadian Food Inspection Agency; Fisheries & Oceans Canada	McKenzie, CH (通讯作者)，Fisheries & Oceans Canada, Northwest Atlant Fisheries Ctr, St John, NF A1C 5X1, Canada.	Cynthia.McKenzie@dfo-mpo.gc.ca	Martin, Jennifer/G-5217-2011; Rourke, Wade/I-6334-2019		DFO Ecosystem Stressors Program; Strategic Program for Ecosystem-based Research and Advice (SPERA)	DFO Ecosystem Stressors Program; Strategic Program for Ecosystem-based Research and Advice (SPERA)	Funding for this review was provided by the DFO Ecosystem Stressors Program and the Strategic Program for Ecosystem-based Research and Advice (SPERA). Five of the authors are retirees who contributed their time and expertise to help in the compilation. The authors acknowledge and thank two anonymous reviewers for their comments, which focused and improved this paper. The authors thank the participants of the 2017 and 2018 harmful algal workshops, held in Sidney (BC) and Dartmouth (NS), respectively, for the discussions that set the objectives of the Canadian HAB working group and focused this review. The authors also thank the participants of the DFO Canadian Science Advice Secretariat (CSAS) National Peer Review meeting "Harmful Algal Events in Canadian Marine Ecosystems: Current status, impacts and consequences and knowledge gaps" held in March 2019 in Sidney (BC) for their review and discussion of an earlier version of the study. The authors also acknowledge the ICES Expert Group members of the Working Groups on Harmful Algal Bloom Dynamics (ICES/IOC/WGHABD), the Introductions and Transfers of Marine Organisms (ICES/WGITMO) and Ballast and Other Ship Vectors (ICES/IOC/IMO/WGBOSV) for their discussions related to the information presented in this paper.	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J	Tsunashima, A; Itoh, H; Katano, T				Tsunashima, Ayumi; Itoh, Hiroshi; Katano, Toshiya			Effects of temperature and phytoplankton community composition on subitaneous and resting egg production rates of <i>Acartia omorii</i> in Tokyo Bay	SCIENTIFIC REPORTS			English	Article							CALANOID COPEPOD EGGS; PLANKTONIC COPEPODS; FOOD QUALITY; SPATIAL-DISTRIBUTION; POPULATION-DYNAMICS; EURYTEMORA-AFFINIS; CLAUSI GIESBRECHT; INLAND SEA; MARINE; LONG	To clarify the effects of temperature and phytoplankton community composition on Acartia omorii (Copepoda: Calanoida) egg production, its abundance and egg production rates were investigated from 2016 to 2018 in Tokyo Bay, Japan. Abundance was high from March to May (>3.0x10(4) individuals m(-3)) and low or undetected from late June to December (<= 0.4x10(4) individuals m(-3)). In 2018, most eggs were subitaneous until April; diapause eggs appeared in May when the water temperature exceeded 20 degrees C. The weight-specific egg production rate (SEPR, C-egg C-female(-1) day(-1)) had two peaks. In the first peak in January,>90% of eggs were subitaneous; in contrast, in the second peak in May, 60% of eggs were unhatched, including diapause eggs. The first peak of subitaneous eggs may contribute to planktonic population development from March to May. In contrast the second peak of diapause eggs probably enhances their recurrence in the next winter. Multiple regression analysis revealed that subitaneous SEPR showed a negative response, whereas diapause SEPR showed a positive response to temperature. Subitaneous SEPR positively correlated with the proportion of small diatoms in phytoplankton carbon biomass, whereas unhatched SEPR positively correlated with the proportion of inedible preys in large diatoms and dinoflagellates. Edible diatoms may induce subitaneous egg production, whereas low-food availability may induce diapause egg production. These results suggest that phytoplankton composition and water temperature have strong impacts on the dynamics of A. omorii via egg production.	[Tsunashima, Ayumi; Katano, Toshiya] Tokyo Univ Marine Sci & Technol, Grad Sch Marine Sci & Technol, Minato Ku, Konan 4-5-7, Tokyo 1088477, Japan; [Itoh, Hiroshi] Suidosha Co Ltd, 8-11-11 Ikuta, Kawasaki, Kanagawa 2140038, Japan	Tokyo University of Marine Science & Technology	Katano, T (通讯作者)，Tokyo Univ Marine Sci & Technol, Grad Sch Marine Sci & Technol, Minato Ku, Konan 4-5-7, Tokyo 1088477, Japan.	tkatan0@kaiyodai.ac.jp	katano, toshiya/O-1904-2014	katano, toshiya/0000-0001-5184-3065				ANAKUBO T, 1991, Journal of the Tokyo University of Fisheries, V78, P145; Ando H, 2003, OCEANOGR JPN, V12, P407, DOI DOI 10.5928/KAIYOU.12.407; Ask J, 2006, J PLANKTON RES, V28, P683, DOI 10.1093/plankt/fbl005; Avery DE, 2005, J EXP MAR BIOL ECOL, V314, P203, DOI 10.1016/j.jembe.2004.09.004; AYUKAI T, 1988, Bulletin of Plankton Society of Japan, V35, P127; Ban SH, 1997, MAR ECOL PROG SER, V157, P287, DOI 10.3354/meps157287; Barreiro A, 2011, J EXP MAR BIOL ECOL, V401, P13, DOI 10.1016/j.jembe.2011.03.007; 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J	Pandeirada, MS; Craveiro, SC; Daugbjerg, N; Moestrup, O; Calado, AJ				Pandeirada, Mariana S.; Craveiro, Sandra C.; Daugbjerg, Niels; Moestrup, Ojvind; Calado, Antonio J.			Fine-structural characterization and phylogeny of <i>Sphaerodinium</i> (Suessiales, Dinophyceae), with the description of an unusual type of freshwater dinoflagellate cyst	EUROPEAN JOURNAL OF PROTISTOLOGY			English	Article						Dino flagellates; Flagellar apparatus; Phylogeny; Resting cyst; Sphaerodinium; Ultrastructure	RDNA-BASED PHYLOGENY; SP-NOV DINOPHYCEAE; ELECTRON-MICROSCOPY; LAKE TOVEL; COMB.-NOV; GEN. NOV; ULTRASTRUCTURE; PERIDINIUM; MORPHOLOGY; TOVELLIACEAE	Two strains of Sphaerodinium were established from two mountarn areas in Portugal and examined by light microscopy, scanning and transmission electron microscopy, and sequence analyses of nuclear-encoded SSU, ITS1-5.8S-ITS2 and LSU rDNA. Both strains were identified as S. polonicum var. tatricum on the basis of comparison with the original taxonomic descriptions within the genus. The two strains were nearly identical in morphology and ultrastructure, except for the presence of pseudograna-like thylakoid stacks within more rounded chloroplast lobes in one of them. Sexual reproduction occurred in culture batches and resting cysts with single or grouped processes with wide bases and distal platforms with slightly recurved margins were seen to develop by sudden retraction of planozygote cytoplasm. Morphological, fine-structural and molecular characters were compared with previously available information from S. cracoviense, allowing for a more robust characterization of the genus. Important characters include a type F eyespot, a pusule canal linking the transverse flagellar canal to a collecting chamber connected to regular pusular tubes, a ventral tibre extending from the proximal-right, side of the longitudinal basal body, and a membranous, lamellar body with a honeycomb pattern near the flagellar base area. The latter two features are shared with Baldinia anauniensis. (C) 2021 Elsevier GmbH. All rights reserved.	[Pandeirada, Mariana S.; Craveiro, Sandra C.; Calado, Antonio J.] Univ Aveiro, Dept Biol, P-3810193 Aveiro, Portugal; [Pandeirada, Mariana S.; Craveiro, Sandra C.; Calado, Antonio J.] Univ Aveiro, GeoBioTec Res Unit, P-3810193 Aveiro, Portugal; [Daugbjerg, Niels; Moestrup, Ojvind] Univ Copenhagen, Dept Biol, Marine Biol Sect, Univ Pk 4, DK-2100 Copenhagen O, Denmark	Universidade de Aveiro; Universidade de Aveiro; University of Copenhagen	Craveiro, SC (通讯作者)，Univ Aveiro, Dept Biol, P-3810193 Aveiro, Portugal.	scraveiro@ua.pt	Calado, Sandra Carla/A-6791-2016; Daugbjerg, Niels/D-3521-2014; Pandeirada, Mariana Sofia/E-8803-2015; Calado, Antonio Jose/D-6263-2015	Calado, Sandra Carla/0000-0002-2738-7626; Daugbjerg, Niels/0000-0002-0397-3073; Pandeirada, Mariana Sofia/0000-0001-5061-9029; Calado, Antonio Jose/0000-0002-9711-0593	program POCII (Programa Operacional Capital Humano) [SFRII/BD/109016/2015]; European Social Fund (FSE); Portuguese Ministry of Science; GeoBioTec [IIM/GEO/04035/2020]	program POCII (Programa Operacional Capital Humano); European Social Fund (FSE)(European Social Fund (ESF)); Portuguese Ministry of Science; GeoBioTec	To the 1-.ahoratory of Molecular Studies for Marine Environments (LEIVIAM), I Jmv. Aveiro, Portugal, where the molecular work was conducted, and to Mitsunori Iwataki for sharing the SST] rDNA data matrix used here. M.S.P. was supported by the grant SFRII/BD/109016/2015, from the financing programPOCII(Programa Operacional Capital Humano), the European Social Fund (FSE) and the Portuguese Ministry of Science. Technology and Higher Education (MCTES). GeoBioTec (IIM/GEO/04035/2020) supported this work.	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J	Kang, Y; Kim, HJ; Moon, CH				Kang, Yoonja; Kim, Hyun-Jung; Moon, Chang-Ho			Eutrophication Driven by Aquaculture Fish Farms Controls Phytoplankton and Dinoflagellate Cyst Abundance in the Southern Coastal Waters of Korea	JOURNAL OF MARINE SCIENCE AND ENGINEERING			English	Article						dinoflagellate cysts; phytoplankton; eutrophication; fish farms; heterotrophic; mixotrophic cysts; ANN	HARMFUL ALGAL BLOOMS; ARTIFICIAL NEURAL-NETWORKS; COCHLODINIUM-POLYKRIKOIDES; RESTING CYSTS; GROWTH-RATES; BAY; DINOPHYCEAE; TEMPERATURE; PRODUCTIVITY; INDICATORS	We examined the dynamics of dinoflagellate cyst and phytoplankton assemblages in eutrophic coastal waters of Korea, adjacent to fish and shellfish farms. Water temperature showed seasonality, whereas salinity and pH remained relatively consistent. Dissolved inorganic nutrient levels were higher in September and at the inner stations, where aquaculture fish farms are located than those in May and at the outer stations. Canonical correspondence analysis and artificial neural network analysis revealed multiple environmental factors that affect the distribution of phytoplankton and dinoflagellate cysts. Diatoms dominated in the phytoplankton assemblages, while the protoperidinioid group dominated in the dinoflagellate cyst assemblages. Cyst abundance was higher at the outer stations than at the inner stations due to transport by fast currents, and phytoplankton abundance was positively correlated with cyst abundance. An increase in diatom abundance led to an increase in heterotrophic/mixotrophic cyst abundance, indicating that excessive uneaten food and urinary waste from the fish farms caused eutrophication in the study region and fast growth of diatoms, thereby contributing to the growth of heterotrophic/mixotrophic dinoflagellates and consequently, high abundance of heterotrophic/mixotrophic dinoflagellate cysts.	[Kang, Yoonja] Chonnam Natl Univ, Dept Ocean Integrated, Yeosu 59626, South Korea; [Kim, Hyun-Jung] Marine Ecotechnol Inst, Busan 48520, South Korea; [Moon, Chang-Ho] Pukyong Natl Univ, Dept Oceanog, Busan 48513, South Korea	Chonnam National University; Pukyong National University	Kang, Y (通讯作者)，Chonnam Natl Univ, Dept Ocean Integrated, Yeosu 59626, South Korea.	yoonjakang@jnu.ac.kr; hjkim@marine-eco.co.kr; chmoon@pknu.ac.kr	Kang, Yoonja/AAI-1725-2021		Basic Science Research Program through the National Research Foundation of Korea - Ministry of Education, Science and Technology [2020R1F1A1076628]	Basic Science Research Program through the National Research Foundation of Korea - Ministry of Education, Science and Technology	This study was supported by a grant of Basic Science Research Program through the National Research Foundation of Korea funded by the Ministry of Education, Science and Technology (No. 2020R1F1A1076628).	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Mar. Sci. Eng.	APR	2021	9	4							362	10.3390/jmse9040362	http://dx.doi.org/10.3390/jmse9040362			23	Engineering, Marine; Engineering, Ocean; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Oceanography	RR5BO		gold			2025-03-11	WOS:000643113600001
J	Prasath, BB; Wang, Y; Su, YP; Zheng, WN; Lin, H; Yang, H				Prasath, Barathan Balaji; Wang, Ying; Su, Yuping; Zheng, Wanning; Lin, Hong; Yang, Hong			Coagulant Plus <i>Bacillus nitratireducens</i> Fermentation Broth Technique Provides a Rapid Algicidal Effect of Toxic Red Tide Dinoflagellate	JOURNAL OF MARINE SCIENCE AND ENGINEERING			English	Article						Bacillus nitratireducens; fermentation broth; polyaluminum chloride coagulation (PAC); Gymnodinium catenatum; cysts	HARMFUL; BACTERIUM; POPULATIONS; IMPACTS	When the toxic red tide alga Gymnodinium catenatum H.W. Graham accumulates in sediment through sexual reproduction, it provides the provenance of a periodic outbreak of red tide, a potential threat to the marine environment. In our study, the flocculation effects of four coagulants were compared. Bacteria fermentation (Ba3) broth and coagulant were combined with Ba3 to reduce the vegetative cells of G. catenatum, inhibit the cystic germination in the sediment, and control the red tide outbreak. To promote a more efficient and environmentally friendly algae suppression method, we studied these four coagulants combined with algae suppression bacteria for their effect on G. catenatum. The results show that polyaluminum chloride (PAC) is more efficient than other coagulants when used alone because it had a more substantial inhibitory effect. Ba3 broth also had a beneficial removal effect on the vegetative cells of G. catenatum. The inhibition efficiency of 2-day fermentation liquid was higher than that of 1-day and 3-day fermentation liquids. When combined, the PAC and Ba3 broth produced a pronounced algae inhibition effect that effectively hindered the germination of algae cysts. We conclude that this combination provides a scientific reference for the prevention and control of marine red tide. Our results suggest that designing environmentally friendly methods for the management of harmful algae is quite feasible.	[Prasath, Barathan Balaji; Wang, Ying; Su, Yuping; Zheng, Wanning; Lin, Hong] Fujian Normal Univ, Coll Environm Sci & Engn, Fuzhou 350007, Peoples R China; [Prasath, Barathan Balaji; Su, Yuping] Fujian Key Lab Pollut Control & Resource Recyding, Fuzhou 350007, Peoples R China; [Yang, Hong] Univ Reading, Dept Geog & Environm Sci, Reading RG6 6AB, Berks, England	Fujian Normal University; University of Reading	Su, YP (通讯作者)，Fujian Normal Univ, Coll Environm Sci & Engn, Fuzhou 350007, Peoples R China.; Su, YP (通讯作者)，Fujian Key Lab Pollut Control & Resource Recyding, Fuzhou 350007, Peoples R China.	b.balajiprasath@gmail.com; wing@163.com; ypsu@fjnu.edu.cn; wanning.zheng@foxmail.com; honglin0108@126.com; hongyanghy@gmail.com	Yang, Hong/C-1739-2008; Su, Yu-Ping/J-7534-2012; Barathan, Balaji Prasath/AAE-3189-2022	Barathan, Dr. Balaji Prasath/0000-0001-7896-2208	National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation" project [2016YFE0202100]; National Natural Science Foundation of China [41573075]; Minjiang Scholar Program	National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation" project; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Minjiang Scholar Program	This work was supported by the National Key Research & Development Plan "Strategic International Scientific and Technological Innovation Cooperation" project (2016YFE0202100), the National Natural Science Foundation of China (41573075), and Minjiang Scholar Program.	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Mar. Sci. Eng.	APR	2021	9	4							395	10.3390/jmse9040395	http://dx.doi.org/10.3390/jmse9040395			17	Engineering, Marine; Engineering, Ocean; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Oceanography	RR5GC		Green Accepted, gold			2025-03-11	WOS:000643125400001
J	Likumahua, S; Sangiorgi, F; de Boer, MK; Tatipatta, WM; Pelasula, DD; Polnaya, D; Hehuwat, J; Siahaya, DM; Buma, AGJ				Likumahua, Sem; Sangiorgi, Francesca; de Boer, M. Karin; Tatipatta, Willem M.; Pelasula, Daniel D.; Polnaya, Dominggus; Hehuwat, Jance; Siahaya, Donna M.; Buma, Anita G. J.			Dinoflagellate cyst distribution in surface sediments of Ambon Bay (eastern Indonesia): Environmental conditions and harmful blooms	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate cysts; Eutrophication; Pyrodinium bahamense; Toxic algal bloom; Seedbank	BAHAMENSE VAR. COMPRESSUM; RECENT MARINE-SEDIMENTS; PYRODINIUM-BAHAMENSE; ORGANIC-CARBON; ALGAL BLOOMS; ARAFURA SEA; GULF; VARIABILITY; ABUNDANCE; RIVER	The present study aimed to document dinocyst ecological preferences in Ambon Bay, Eastern Indonesia, and to investigate if the bay sediments serve as a seedbank for toxic bloom events. To this end, dinocyst and geochemical analyses of surface sediment samples were performed, along with physicochemical water column parameters. Twentythree dinocyst species were identified, and high dinocyst concentrations (up to similar to 12,000 cysts g(-1) dry sediment) were found in the inner bay. Environmental factors such as surface water temperature and salinity generally played an important role in dinocyst distribution. The concentration of Polysphaeridium zoharyi cysts showed a strong positive correlation with phosphorus. A statistically significant correlation was also found with the concentration of other autotrophic dinocysts in the sediments, and an inverse correlation was observed with the sediment C/N ratio. Cysts may serve as seedbanks for Pyrodinium bahamense blooms in the area.	[Likumahua, Sem; de Boer, M. Karin; Buma, Anita G. J.] Univ Groningen, Fac Sci & Engn, Energy & Sustainabil Res Inst Groningen, Dept Ocean Ecosyst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands; [Likumahua, Sem; Tatipatta, Willem M.; Pelasula, Daniel D.; Polnaya, Dominggus; Hehuwat, Jance] Ctr Deep Sea Res LIPI, Jl Y Syaranamual Guru Guru Poka, Ambon, Indonesia; [Sangiorgi, Francesca] Univ Utrecht, Dept Earth Sci Marine Palynol & Paleoceanog, Princetonlaan 8A, NL-3584 CB Utrecht, Netherlands; [de Boer, M. Karin] Univ Groningen, Fac Sci & Engn, Beta Sci Shop, Nijenborgh 6, NL-9747 AG Groningen, Netherlands; [Siahaya, Donna M.] Environm Agcy North Halmahera Dist, Jl Kawasan Pemerintahan, Tobelo Halmahera Utara 97762, Indonesia	University of Groningen; National Research & Innovation Agency of Indonesia (BRIN); Indonesian Institute of Sciences (LIPI); Utrecht University; University of Groningen	Likumahua, S (通讯作者)，Univ Groningen, Fac Sci & Engn, Energy & Sustainabil Res Inst Groningen, Dept Ocean Ecosyst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands.	s.likumahua@rug.nl	Buma, Anita/E-8372-2015	Sangiorgi, Francesca/0000-0003-4233-6154	LPDP program [PRJ-1007/LPDP.3/2016]; Indonesian Ministry of Finance; DIPA -LIPI	LPDP program; Indonesian Ministry of Finance(Ministry of Research and Technology of the Republic of Indonesia (RISTEK)); DIPA -LIPI	We thank Eduard Moniharapon for operating the CTD, La Imu and Abdul Sudin Malik for collecting and analyzing dissolved nutrients, and Dr. Augy Syahailatua for allowing us to work in the LIPI's plankton and chemical laboratory during our campaign in Ambon. We also thank staff and technicians at Utrecht University; J. J. (Coen) Mulder and Helen C. de Waard for analyzing geochemical parameters, and Natasja Welters and Giovanni A. Dammers for processing sediment samples and preparing microscope slides. This work was supported and funded by the LPDP program (Nomor: PRJ-1007/LPDP.3/2016), the Indonesian Ministry of Finance, and partly funded by DIPA -LIPI.	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MAY	2021	166								112269	10.1016/j.marpolbul.2021.112269	http://dx.doi.org/10.1016/j.marpolbul.2021.112269		MAR 2021	11	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	RZ2OI	33752158	hybrid, Green Published			2025-03-11	WOS:000648437900003
J	Colon, R; Rein, KS				Colon, Ricardo; Rein, Kathleen S.			Essential components of the xanthophyll cycle differ in high and low toxin <i>Karenia brevis</i>	HARMFUL ALGAE			English	Article						Karenia brevis; Xanthophyll cycle; MGDG; Redox proteomics; Diadinoxanthin; Thioredoxin system	VIOLAXANTHIN DE-EPOXIDASE; RED TIDE DINOFLAGELLATE; MONOGALACTOSYLDIACYLGLYCEROL MGDG; OSMOTIC-STRESS; RNA INTEGRITY; MEMBRANE; DIADINOXANTHIN; BREVETOXIN; PROTEINS; SOLUBILIZATION	The dinoflagellate Karenia brevis, blooms annually in the Gulf of Mexico, producing a suite of neurotoxins known as the brevetoxins. The cellular toxin content of K. brevis, however, is highly variable between or even within strains. Herein, we investigate physiological differences between high (KbHT) and low (KbLT) toxin producing cultures both derived from the Wilson strain, related to energy-dependent quenching (qE) by photosystem II, and reduced thiol content of the proteome. We demonstrate that gene and protein expression of the xanthophyll cycle enzyme diadinoxanthin de-epoxidase (Dde) and monogalactosyldiacylglycerol (MGDG) synthase are not significantly different in the two cultures. Using redox proteomics, we report a significantly higher reduced cysteine content in the low toxin proteome, including plastid localized thioredoxin reductase (Trx) which can result in inactivation of Dde and activation of MGDG synthase. We also report significant differences in the lipidomes of KbHT and KbLT with respect to MGDG, which facilitates the xanthophyll cycle.	[Colon, Ricardo; Rein, Kathleen S.] Florida Int Univ, Dept Chem & Biochem, 11200 SW 8th St, Miami, FL 33199 USA	State University System of Florida; Florida International University	Rein, KS (通讯作者)，Florida Int Univ, Dept Chem & Biochem, 11200 SW 8th St, Miami, FL 33199 USA.	reink@fiu.edu	Rein, Kathleen/AAP-3668-2021	Rein, Kathleen/0000-0001-9268-1584	FIU Toxic Algae Culture Facility; FIU Algal Bloom Education and Outreach Program; National Science Foundation [EPS 0236913, MCB 1413036, MCB 0920663, DBI 0521587, DBI1228622]; Kansas Technology Enterprise Corporation, K-IDeA Networks of Biomedical Research Excellence (INBRE) of National Institute of Health [P20GM103418]; Kansas State University	FIU Toxic Algae Culture Facility; FIU Algal Bloom Education and Outreach Program; National Science Foundation(National Science Foundation (NSF)); Kansas Technology Enterprise Corporation, K-IDeA Networks of Biomedical Research Excellence (INBRE) of National Institute of Health; Kansas State University	The authors would like to acknowledge the Kansas Lipidomics Research Center Analytical Laboratory, the University of Florida Interdisciplinary Center for Biotechnology Research for their assistance in generating the K. brevis proteome database for analysis, as well as the University of Texas Southwestern Proteomics Core for sample analysis, and proteomics data processing. This work was supported by the FIU Toxic Algae Culture Facility and the FIU Algal Bloom Education and Outreach Program. Instrument acquisition and lipidomics method development was supported by National Science Foundation (EPS 0236913, MCB 1413036, MCB 0920663, DBI 0521587, DBI1228622), Kansas Technology Enterprise Corporation, K-IDeA Networks of Biomedical Research Excellence (INBRE) of National Institute of Health (P20GM103418), and Kansas State University.	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J	Yu, RC; Zhang, QC; Liu, Y; Chen, ZF; Geng, HX; Dai, L; Lin, ZR; Tang, WJ; Kong, FZ; Yan, T; Zhou, MJ				Yu, Ren-Cheng; Zhang, Qing-Chun; Liu, Yang; Chen, Zhen-Fan; Geng, Hui-Xia; Dai, Li; Lin, Zhuo-Ru; Tang, Wen-Jiao; Kong, Fan-Zhou; Yan, Tian; Zhou, Ming-Jiang			The dinoflagellate <i>Alexandrium catenella</i> producing only carbamate toxins may account for the seafood poisonings in Qinhuangdao, China	HARMFUL ALGAE			English	Article						Paralytic shellfish toxins (PSTs); Alexandrium catenella; Bohai Sea; HPLC; High throughput sequencing; Cyst	PARALYTIC SHELLFISH TOXINS; TAMARENSE SPECIES COMPLEX; BOHAI SEA; DINOPHYCEAE; SAXITOXIN; MORPHOLOGY; TOXICITY; PROFILE; ECOPHYSIOLOGY; PHYTOPLANKTON	An outbreak of paralytic shellfish poisoning, recorded in April 2016 in Qinhuangdao China, was suspected to be caused by a toxic species in genus Alexandrium. Shortly after the poisoning outbreak, shellfish and netconcentrated phytoplankton samples were collected from the Bohai Sea, and analysed using high performance liquid chromatography coupled with fluorescence detection. Paralytic shellfish toxins (PSTs) were detected in both phytoplankton and shellfish samples, with similar toxin profiles dominated by carbamate toxins. High throughput sequencing data for phytoplankton samples collected previously in the coastal waters of Qinhuangdao were then analysed, and 8 operational taxonomic units (OTUs) were assigned to Alexandrium affine, A. andersonii/A. ostenfeldii, A. catenella, A. fraterculus, A. hiranoi/A. pseudogonyaulax, A. margalefii, A. pacificum and A. pohangense, among which A. catenella, A. pacificum and A. ostenfeldii could be potential producers of PSTs. During a cruise in 2019, three isolates of Alexandrium were established by cyst germination, and identified as A. catenella based on the sequences of the 28S ribosomal RNA gene (28S rDNA) D1-D2 region. Interestingly, all the three strains had the same toxin profile consisting of gonyautoxins 1, 3, 4 (GTX1, 3, 4) and neosaxitoxin (NEO). The toxin profile is similar to those of phytoplankton samples collected previously in the coastal waters of Qinhuangdao, but remarkably different from the general toxin profile of A. catenella dominated by N-sulfocarbamoyl toxins C1-2 in the Bohai Sea and the Yellow Sea. The results suggest that A. catenella is most likely to be the causative species of the poisoning outbreak in Qinhuangdao. As far as we know, this is the first report of A. catenella in the Bohai Sea producing PSTs dominated by high potent gonyautoxins GTX1-4. Occurrence of the highly toxic A. catenella will increase the risk of paralytic shellfish poisoning, which necessitates in-depth mechanism studies and increasing monitoring efforts.	[Yu, Ren-Cheng; Zhang, Qing-Chun; Dai, Li; Lin, Zhuo-Ru; Kong, Fan-Zhou; Yan, Tian; Zhou, Ming-Jiang] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Yu, Ren-Cheng; Zhang, Qing-Chun; Kong, Fan-Zhou; Yan, Tian] Pilot Natl Lab Marine Sci & Technol Qingdao, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Yu, Ren-Cheng; Dai, Li; Lin, Zhuo-Ru] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Yu, Ren-Cheng] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Liu, Yang] Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangdong Prov Key Lab Appl Marine Biol, Guangzhou 510301, Peoples R China; [Chen, Zhen-Fan] Shenzhen Univ, Coll Life Sci & Oceanog, Shenzhen 518060, Peoples R China; [Geng, Hui-Xia] Chinese Acad Sci, Inst Oceanol, Changjiang River Estuary Ecosyst Res Stn, Qingdao 266071, Peoples R China; [Tang, Wen-Jiao] Ocean Univ China, Coll Marine Life Sci, Qingdao 266003, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences; South China Sea Institute of Oceanology, CAS; Shenzhen University; Chinese Academy of Sciences; Institute of Oceanology, CAS; Ocean University of China	Yu, RC (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	rcyu@qdio.ac.cn	Lin, Zhuoru/AFZ-2792-2022; Geng, Hui-Xia/X-5380-2018; Liu, Yang/ITT-4369-2023; Yu, Rencheng/J-4450-2017	Chen, Zhenfan/0000-0001-9060-6193; Yu, Rencheng/0000-0001-6430-9224	National Key RD Program [2019YFC1407901]; Science & Technology Basic Resources Investigation Program [2018FY100206]; Ministry of Science and Technology of China; CAS-CSIRO BAU project [GJHZ201973]; Chinese Academy of Sciences	National Key RD Program; Science & Technology Basic Resources Investigation Program; Ministry of Science and Technology of China(Ministry of Science and Technology, China); CAS-CSIRO BAU project; Chinese Academy of Sciences(Chinese Academy of Sciences)	We deeply appreciate the constructive advice of the anonymous reviewers to this manuscript. This study was supported by a National Key R&D Program (grant number 2019YFC1407901) and a Science & Technology Basic Resources Investigation Program (grant number 2018FY100206) supported by the Ministry of Science and Technology of China, and a CAS-CSIRO BAU project (grant GJHZ201973) supported by the Chinese Academy of Sciences [CG].	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J	Dumitriu, TC; Loghin, S; Branzila, M; Baciu, DS; Dumitriu, SD; Mare, S; Dumitriu, AM; Ionesi, V				Dumitriu, Tony-Cristian; Loghin, Sergiu; Branzila, Mihai; Baciu, Dorin Sorin; Dumitriu, Simina Dumitrita; Mare, Silvia; Dumitriu, Ana Maria; Ionesi, Viorel			MICROSCOPIC "STRUCTURE-FROM-MOTION" PHOTOGRAMMETRY, A METHOD FOR MICROFOSSIL STUDY	CARPATHIAN JOURNAL OF EARTH AND ENVIRONMENTAL SCIENCES			English	Article						"Structure-from-Motion" Photogrammetry; 3-D microfossils; foraminifers; ostracods; radiolarians; spicules		The microfossils taxonomy, apart from the recently and thoroughly studied molecular data is mostly based on the morphology of their external shape. Classical microfossil studies involve the usage of an optic microscope in order to identify the external morphological characters, followed by detailed examination using Scanning Electron Microscopy (SEM). In many cases, for an accurate determination of the specimen, correlation of the characters from its opposite sides is necessary. Using 2D images in the determination process is quite hard and often could lead to poor and insufficient information gathering. This study presents a new method for the microfossil representation. The method allows a more accurate measurement of the morphology of the specimens. The "Structure-from-Motion" Photogrammetry technique makes use of a very accessible methodology: SEM photos and photogrammetry software. The 3D models have been made for nine specimens of foraminifera, ostracods, radiolarians, ascidian spicules, and a dinoflagellate cysts. The variability of the studied specimens proves that this method can be successfully applied to almost all groups of microorganisms.	[Dumitriu, Tony-Cristian; Loghin, Sergiu; Branzila, Mihai; Baciu, Dorin Sorin; Dumitriu, Simina Dumitrita; Dumitriu, Ana Maria; Ionesi, Viorel] Alexandru Ioan Cuza Univ, Fac Geog & Geol, Dept Geol, Carol I Bd, Iasi 700505, Romania; [Mare, Silvia] SC Geol Worldwide Serv SRL, Bucharest, Romania	Alexandru Ioan Cuza University	Loghin, S (通讯作者)，Alexandru Ioan Cuza Univ, Fac Geog & Geol, Dept Geol, Carol I Bd, Iasi 700505, Romania.	tony.dumitriu@uaic.ro; loghin_sergiu@yahoo.com; mib@uaic.ro; dsbaciu@gmail.com; siminadumitriu@gmail.com; silvia_mare@yahoo.com; anamaria.hutu@yahoo.com; vioion@uaic.ro	Dumitriu, Tony Cristian/AAP-4673-2021; Loghin, Sergiu/HQZ-7041-2023	Loghin, Sergiu/0009-0002-1103-2131	 [POCU/380/6/13/123623]		Authors want to thank to POCU/380/6/13/123623 project for the financial support in publication of this paper. We are also thanking to Constantin Costea and Daniel Birgaoanu, from Geological Institute of Romania, Microcosmos laboratory, for their support in providing high quality SEM photos for some of our specimens. Also, the authors want to express their gratitude towards Nvidia Co. for their hardware support without whom the achievement of this paper would not have been possible.	[Anonymous], 2013, AN ST ALE U AI CUZA; Bak Marta, 2005, Annales Societatis Geologorum Poloniae, V75, P139; Bates K.T., 2009, P 8 C FOSSIL RESOURC, P101; Belvedere M., 2011, IMPACT DIGITAL TREND; d'Orbigny A., 1846, FORAMINIFERES FOSSIL, VXXXVII; Didkowski V. 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J. Earth Environ. Sci.	FEB	2021	16	1					99	115		10.26471/cjees/2021/016/159	http://dx.doi.org/10.26471/cjees/2021/016/159			17	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	QQ5NK					2025-03-11	WOS:000624570200009
J	Kim, HJ; Li, Z; Kang, NS; Gu, HF; Kim, D; Seo, MH; Lee, SD; Yun, SM; Oh, SJ; Shin, HH				Kim, Hyun Jung; Li, Zhun; Kang, Nam Seon; Gu, Haifeng; Kim, Daekyung; Seo, Min Ho; Lee, Sang Deuk; Yun, Suk Min; Oh, Seok-Jin; Shin, Hyeon Ho			Morphology and Phylogeny of <i>Scrippsiella</i> <i>precaria</i> Montresor & Zingone (Thoracosphaerales, Dinophyceae) from Korean Coastal Waters	JOURNAL OF MARINE SCIENCE AND ENGINEERING			English	Article						Scrippsiella; resting cyst; intercalary plate; precingular plate; ribotype	SP-NOV DINOPHYCEAE; PHOTOTROPHIC DINOFLAGELLATE; TAXONOMIC CLARIFICATION; TROCHOIDEA DINOPHYCEAE; SPINIFERA PERIDINIALES; MARINE DINOFLAGELLATE; CYST; PERFORMANCE; IDENTITY	The dinoflagellate genus Scrippsiella is a common member of phytoplankton and their cysts are also frequently reported in coastal sediments worldwide. However, the diversity of Scrippsiella in Korean waters has not been fully investigated. Here, several isolates of Scrippsiella precaria collected from Korean waters and germinated from resting cysts were examined using light and scanning electron microscopy. The resting cysts were characterized by pointed calcareous spines and one or two red accumulation bodies, and the archeopyle was mesoepicystal, representing the loss of 2-4' and 1-3a paraplates. Rounded resting cysts were found in culture, and an increase in spine length was observed until 8 days of development. Korean isolates of S. precaria had the plate formula of Po, X, 4', 3a, 7 '', 6C, 4S, 5 ''', 2 ''. There were differences in the cell size and location of the red body between Korean isolates and previously described cells of S. precaria. In addition, the Korean isolates of S. precaria had two types of the 5 '' plate that either contacted the 2a plate or not. Molecular phylogeny based on internal transcribed spacer (ITS) and large subunit (LSU) rDNA sequences revealed that the Korean isolates were nested within the subclade of PRE (S. precaria and related species) in the Glade of Scrippsiella sensu lato, and that the PRE subclade had two ribotypes: ribotype 1 consisting of the isolates from Korea, China, and Australia, and ribotype 2 consisting of the isolates from Italy and Greece. Lineages between isolates of ribotype 1 were likely to be related to the dispersal by ocean currents and ballast waters from international shipping, and the two types of spine shapes and locations of the 5 '' plates may be a distinct feature for ribotype 1.	[Kim, Hyun Jung; Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Kim, Hyun Jung; Oh, Seok-Jin] Pukyong Natl Univ, Dept Oceanog, Lab Coastal Ecol & Environm, Busan 48513, South Korea; [Li, Zhun] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures KCTC, Biol Resource Ctr, Jeongeup 56212, South Korea; [Kang, Nam Seon] Natl Marine Biodivers Inst Korea, Dept Taxon & Systemat, Seocheon 33662, South Korea; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Dept Marine Biol & Ecol, Xiamen 361005, Peoples R China; [Kim, Daekyung] Korea Basic Sci Inst KBSI, Daegu Ctr, Daegu 41566, South Korea; [Seo, Min Ho] Marine Ecol Res Ctr, Yeosu 59697, South Korea; [Lee, Sang Deuk; Yun, Suk Min] Nakdonggang Natl Inst Biol Resources NNIBR, Bioresources Collect & Res Team, Sangju 37242, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Pukyong National University; Korea Research Institute of Bioscience & Biotechnology (KRIBB); Marine Biodiversity Institute of Korea (MABIK); Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; Korea Basic Science Institute (KBSI)	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.	guswjd9160@kiost.ac.kr; lizhun@kribb.re.kr; kang3610@mabik.re.kr; guhaifeng@tio.org.cn; dkim@kbsi.re.kr; copepod79@gmail.com; diatom83@nnibr.re.kr; horriwar@nnibr.re.kr; sjoh1972@pknu.ac.kr; shh961121@kiost.ac.kr	LI, ZHUN/GLT-3478-2022; Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171; Lee, Sang Deuk/0000-0002-2948-0269; Shin, Hyeon Ho/0000-0002-9711-6717; LI, ZHUN/0000-0001-8961-9966	Korea Institute of Ocean Science & Technology (KIOST) [PE99821]; National Marine Biodiversity Institute of Korea (MABIK) [2021M01100]; Nakdonggang National Institute of Biological Resources (NNIBR) [202101103]; Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program	Korea Institute of Ocean Science & Technology (KIOST); National Marine Biodiversity Institute of Korea (MABIK); Nakdonggang National Institute of Biological Resources (NNIBR); Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program	This work was supported by grants from the Korea Institute of Ocean Science & Technology (KIOST) (PE99821), the National Marine Biodiversity Institute of Korea (MABIK) (2021M01100), and the Nakdonggang National Institute of Biological Resources (NNIBR) (202101103) projects, and the Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program.	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Mar. Sci. Eng.	FEB	2021	9	2							154	10.3390/jmse9020154	http://dx.doi.org/10.3390/jmse9020154			15	Engineering, Marine; Engineering, Ocean; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Oceanography	QN7GE		gold			2025-03-11	WOS:000622622300001
J	Karpov, SA; Reñé, A; Vishnyakov, AE; Seto, K; Alacid, E; Paloheimo, A; Kagami, M; Kremp, A; Garcés, E				Karpov, Sergey A.; Rene, Albert; Vishnyakov, Andrey E.; Seto, Kensuke; Alacid, Elisabet; Paloheimo, Aurora; Kagami, Maiko; Kremp, Anke; Garces, Esther			Parasitoid chytridiomycete <i>Ericiomyces syringoforeus</i> gen. et sp. nov. has unique cellular structures to infect the host	MYCOLOGICAL PROGRESS			English	Article						Brackish-water; Rhizophydiales; Ericiomycetaceae; Dinoflagellate; Ultrastructure; Molecular phylogeny	ALEXANDRIUM-OSTENFELDII; FINE-STRUCTURE; FAM. NOV.; MARINE; RHIZOPHYDIALES; BLOOM; DINOFLAGELLATE; PERKINSOZOA; DINOPHYCEAE; ALIGNMENT	Many fungi have been identified as pathogens of marine algae. Among them, Chytridiomycota have been revealed as relatively highly abundant, but much of the diversity known within these groups is almost entirely based on environmental sequencing data. Here, we present a novel chytridiomycete genus and species, characterized by light microscopical observations, ultrastructure, and molecular phylogenetic analysis of the parasitic chytrid of brackish-water dinoflagellate Kryptoperidinium foliaceum from the Baltic Sea. Phylogenetic analysis of rDNA sequences and the ultrastructure of the strain reveals that it represents a new family in the order Rhizophydiales. Ericiomyces syringoforeus gen. et sp. nov. is a parasitoid with a life cycle composed by zoospores, which attach to the host, encyst, and produce a rhizoidal system (haustorium). Unlike typical Rhizophydiales chytrids, sporangium develops as a lateral outgrowth of the encysted zoospore. The ultrastructural study revealed at least two unique traits: the syringe-like organelle in the cyst, which supposed to paralyze the host, and funnel-shaped structure anchoring sporangium in the host wall. Sporangium matures and produces new zoospores within 3 days. Multiple infections are common and then the life cycle is 1-2 days shorter compared to the duration when a single infection occurred. Cross-infection experiments showed that E. syringoforeus could only infect dinoflagellates, being K. foliaceum highly susceptible to infection by the chytrid parasitoid. The effects of some fungal epidemics on populations of Kryptoperidinium are discussed.	[Karpov, Sergey A.] Russian Acad Sci, Inst Zool, Univ Skaya Nab 1, St Petersburg 199034, Russia; [Karpov, Sergey A.; Vishnyakov, Andrey E.] St Petersburg State Univ, Dept Invertebrate Zool, Fac Biol, Univ Skaya Nab 7-9, St Petersburg 199034, Russia; [Rene, Albert; Alacid, Elisabet; Garces, Esther] Inst Ciencies Mar CSIC, Dept Biol Marina & Oceanog, Passeig Maritim Barceloneta 37-49, Barcelona 08003, Catalonia, Spain; [Seto, Kensuke; Kagami, Maiko] Yokohama Natl Univ, Grad Sch Environm & Informat Sci, Tokiwadai 79-7, Yokohama, Kanagawa 2408501, Japan; [Seto, Kensuke] Univ Michigan, Dept Ecol & Evolutionary Biol, 1105 North Univ, Ann Arbor, MI 48109 USA; [Alacid, Elisabet] Univ Oxford, Dept Zool, 11a Mansfield Rd, Oxford OX1 3SZ, England; [Paloheimo, Aurora] Finnish Environm Inst, Ctr Marine Res, Latokartanonkaari 11, Helsinki 00790, Finland; [Kremp, Anke] Leibniz Inst Balt Sea Res Warnemunde, Dept Biol Oceanog, Seestr 15, D-18119 Rostock, Germany	Russian Academy of Sciences; Zoological Institute of the Russian Academy of Sciences; Saint Petersburg State University; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Centro Mediterraneo de Investigaciones Marinas y Ambientales (CMIMA); CSIC - Instituto de Ciencias del Mar (ICM); Yokohama National University; University of Michigan System; University of Michigan; University of Oxford; Finnish Environment Institute; Leibniz Institut fur Ostseeforschung Warnemunde	Karpov, SA (通讯作者)，Russian Acad Sci, Inst Zool, Univ Skaya Nab 1, St Petersburg 199034, Russia.; Karpov, SA (通讯作者)，St Petersburg State Univ, Dept Invertebrate Zool, Fac Biol, Univ Skaya Nab 7-9, St Petersburg 199034, Russia.	sakarpov4@gmail.com	Kagami, Maiko/L-4430-2018; Karpov, Sergey/H-3271-2013; Alacid, Elisabet/AAB-6468-2021; Garces, Esther/C-5701-2011; Vishnyakov, Andrey/B-6118-2015; Rene, Albert/D-4560-2012	Karpov, Sergey/0000-0002-1509-1908; Alacid, Elisabet/0000-0003-0777-1855; Garces, Esther/0000-0002-2712-501X; Vishnyakov, Andrey/0000-0003-0390-5334; Seto, Kensuke/0000-0003-0606-0736; Rene, Albert/0000-0002-0488-3539	Russian Scientific Foundation [16-14-10302]; MINECO COPAS "Understanding top-down control in coastal bloom-forming protists" [CTM2017-86121-R]; JSPS KAKENHI [15KK0026, 16H02943]; Academy of Finland [251564]; Russian Science Foundation [16-14-10302] Funding Source: Russian Science Foundation; Grants-in-Aid for Scientific Research [16H02943, 15KK0026, 20H03323] Funding Source: KAKEN	Russian Scientific Foundation(Russian Science Foundation (RSF)); MINECO COPAS "Understanding top-down control in coastal bloom-forming protists"; JSPS KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Academy of Finland(Research Council of Finland); Russian Science Foundation(Russian Science Foundation (RSF)); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	Light and electron microscopic studies and manuscript writing were supported by Russian Scientific Foundation grant 16-14-10302. SK and AV thank the Research Resource Centre for Molecular and Cell Technologies (RRC MCT) at St. Petersburg State University (SPbSU) for access to the EM facilities. EG, EA, and AR were supported by MINECO COPAS "Understanding top-down control in coastal bloom-forming protists" (CTM2017-86121-R). MK and KS were supported by JSPS KAKENHI grants 15KK0026 & 16H02943. AK and AP were supported by grant 251564 from Academy of Finland. The authors thank Dr. B.S.C. Leadbeater for English correction.	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Prog.	FEB	2021	20	2					95	109		10.1007/s11557-020-01652-x	http://dx.doi.org/10.1007/s11557-020-01652-x			15	Mycology	Science Citation Index Expanded (SCI-EXPANDED)	Mycology	QA9TY					2025-03-11	WOS:000613788100002
J	Dambrine, M; Puig, B; Vallet, G				Dambrine, M.; Puig, B.; Vallet, G.			A MATHEMATICAL MODEL FOR MARINE DINOFLAGELLATES BLOOMS	DISCRETE AND CONTINUOUS DYNAMICAL SYSTEMS-SERIES S			English	Article						Models for algal red tide; mathematical model in biology; systems of non linear partial differential equations; evolution equations; qualitative properties		We present a model for the life cycle of a dinoflagellate in order to describe blooms. We prove the mathematical well-posedness of the model and the possibility of extinction in finite time of the alga form meaning that the full population is under the cysts from.	[Dambrine, M.; Puig, B.] Univ Pau & Pays Adour, E2S UPPA, CNRS, LMAP, Pau, France; [Vallet, G.] Univ Pau & Pays Adour, UPPA, CNRS, LMAP, Pau, France	Universite de Pau et des Pays de l'Adour; Centre National de la Recherche Scientifique (CNRS); Universite de Pau et des Pays de l'Adour; Centre National de la Recherche Scientifique (CNRS)	Dambrine, M (通讯作者)，Univ Pau & Pays Adour, E2S UPPA, CNRS, LMAP, Pau, France.	marc.dambrine@univ-pau.fr; benedicte.puig@univ-pau.fr; guy.vallet@univ-pau.fr		DAMBRINE, Marc/0000-0003-0173-9950	CNRS; ANR Grant [SHAPO 18-CE40-0013]; E2S grant RODAM	CNRS(Centre National de la Recherche Scientifique (CNRS)); ANR Grant(Agence Nationale de la Recherche (ANR)); E2S grant RODAM	M. Dambrine and B. Puig were supported by the CNRS with a sabbatical year spent at Centro de Modelamiento Matematico of the university of Chile where they discover this problem. They also deeply thanks CMM and CEBIB for their hospitality, C. Conca for pointing us the problem and finaly C. Conca, R. Gormaz and J. San Martin for fruitful discussions. M. Dambrine is also partialy supported by ANR Grant SHAPO 18-CE40-0013 and E2S grant RODAM.	Anderson DM, 2005, DEEP-SEA RES PT II, V52, P2522, DOI 10.1016/j.dsr2.2005.06.014; [Anonymous], 1992, Mathematical Analysis and Numerical Methods for Science and Technology; Boyer F, 2005, DIFFER INTEGRAL EQU, V18, P891; Gagneux G., 1996, Mathematiques et apptications, V22; Guibé O, 2020, ADV NONLINEAR ANAL, V9, P591, DOI 10.1515/anona-2020-0015; He RY, 2008, J GEOPHYS RES-OCEANS, V113, DOI 10.1029/2007JC004602; Inaba H, 2017, AGE STRUCTURED POPUL; Krasnoselskii MA., 1964, TOPOLOGICAL METHODS; McGillicuddy D., 2018, HARMFUL ALGAL BLOOMS, V3; McGillicuddy DJ, 2010, J MARINE SYST, V83, P105, DOI 10.1016/j.jmarsys.2010.06.008	10	0	0	0	6	AMER INST MATHEMATICAL SCIENCES-AIMS	SPRINGFIELD	PO BOX 2604, SPRINGFIELD, MO 65801-2604 USA	1937-1632	1937-1179		DISCRETE CONT DYN-S	Discret. Contin. Dyn. Syst.-Ser. S	FEB	2021	14	2			SI		615	633		10.3934/dcdss.2020424	http://dx.doi.org/10.3934/dcdss.2020424			19	Mathematics, Applied	Science Citation Index Expanded (SCI-EXPANDED)	Mathematics	PN6YO		gold			2025-03-11	WOS:000604622900009
J	Tian, Y; Hu, SM; Lin, XZ; Huang, H; Song, XY; Yan, Y; Xie, XD; Li, T; Liu, S				Tian, Yuan; Hu, Simin; Lin, Xianzhi; Huang, Hui; Song, Xingyu; Yan, Yan; Xie, Xuedong; Li, Tao; Liu, Sheng			Mechanisms of high-frequency dinoflagellate blooms of <i>Scrippsiella trochoidea</i> in Daya Bay, South China Sea	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						harmful algal blooms; dinoflagellate; Daya Bay; Scrippsiella trochoidea	HARMFUL ALGAL BLOOMS; CLIMATE-CHANGE; PHYTOPLANKTON COMMUNITY; MARINE DINOFLAGELLATE; COASTAL WATERS; RED TIDE; IMPACTS; DINOPHYCEAE; GERMINATION; GUANGDONG	Harmful algal blooms (HABs), such as dinoflagellate blooms, have adverse effects on coastal water environments, causing seafood contamination and aquaculture economic losses. Based on historical HAB records data (1983-2017) and phytoplankton data (1982-2008), field investigation and laboratory experiments on frequently bloomed dinoflagellate species, we analyzed the possible mechanisms of high frequency dinoflagellate blooms in Daya Bay, South China Sea. The HAB records data show that the proportion of dinoflagellate blooms increased from 15% before 1994 to 77.27% after 2011. The bloom occurred mostly in summer (57.58%) in Yaling Bay (76.92%). The species inducing dinoflagellate blooms tended to be singular over time, with high proportion of Scrippsiella trochoidea (42.86%-88.88%). Laboratory experiment and field investigation of S. trochoidea bloom showed that this species grew rapidly at 30 degrees C and 32.1 degrees C (r=0.47, P<0.05), respectively. Results indicate that temperature rise in Yaling Bay was affected by nearby nuclear plant effluent, which favored the S. trochoidea bloom. Coincidently, nearly 70% of S. trochoidea blooms occurred in about 7 days after local spring tide and strong wind (wind velocity >7 m/s), which disturbed the resting cysts in the sediment and bring them into surface layer. Taking into account of environmental parameters, algae source, and atmospheric conditions, the probable mechanism of S. trochoidea bloom could be explained. The cysts were resuspended by the spring tide or strong wind, germinated at the bottom layer, reproduced rapidly at higher temperature, and then aggregated in the inner bay (Yaling Bay), resulting the frequent S. trochoidea bloom. Considering the influences of global warming and human activities, it should be taken more attention that dinoflagellate blooms might increase along the coastal waters.	[Tian, Yuan; Hu, Simin; Lin, Xianzhi; Huang, Hui; Song, Xingyu; Yan, Yan; Li, Tao; Liu, Sheng] Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangdong Prov Key Lab Appl Marine Biol, Guangzhou 510301, Peoples R China; [Tian, Yuan] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Huang, Hui; Li, Tao] Chinese Acad Sci, Trop Marine Biol Res Stn Hainan, Sanya 572000, Peoples R China; [Song, Xingyu] Chinese Acad Sci, Nansha Marine Ecol & Environm Res Stn, Guangzhou 510301, Peoples R China; [Xie, Xuedong] Guangdong Ocean & Fishery Environm Monitoring & F, Guangzhou 510222, Peoples R China	Chinese Academy of Sciences; South China Sea Institute of Oceanology, CAS; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences	Li, T; Liu, S (通讯作者)，Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangdong Prov Key Lab Appl Marine Biol, Guangzhou 510301, Peoples R China.; Li, T (通讯作者)，Chinese Acad Sci, Trop Marine Biol Res Stn Hainan, Sanya 572000, Peoples R China.	litao@scsio.ac.cn; shliu@scsio.ac.cn	liu, shengquan/N-2119-2016		Strategic Priority Research Program of the Chinese Academy of Sciences [XDA13020102, XDA13020104]; National Key Research and Development Project of China [2016YFC0502800, 2017YFC0506302]; National Natural Science Foundation of China [41806188]; Science and Technology Planning Project of Guangdong Province, China [2015A020216013, 2017B0303014052]	Strategic Priority Research Program of the Chinese Academy of Sciences(Chinese Academy of Sciences); National Key Research and Development Project of China(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Science and Technology Planning Project of Guangdong Province, China	Supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (Nos. XDA13020102, XDA13020104), the National Key Research and Development Project of China (Nos. 2016YFC0502800, 2017YFC0506302), the National Natural Science Foundation of China (No. 41806188), and the Science and Technology Planning Project of Guangdong Province, China (Nos. 2015A020216013, 2017B0303014052)	Adachi R, 1973, FISH ENG, V9, P31; Alkawri AAS, 2010, HARMFUL ALGAE, V9, P153, DOI 10.1016/j.hal.2009.08.012; [Anonymous], 1996, PROTOCOLS JOINT GLOB; Backer Lorraine C, 2006, Oceanography (Wash D C), V19, P94, DOI 10.5670/oceanog.2006.72; Beardall J, 2009, PLANT ECOL DIVERS, V2, P191, DOI 10.1080/17550870903271363; BINDER BJ, 1986, NATURE, V322, P659, DOI 10.1038/322659a0; Burkholder JM, 1997, LIMNOL OCEANOGR, V42, P1052, DOI 10.4319/lo.1997.42.5_part_2.1052; Cai Zhuo-Ping, 2009, ACTA ECOLOGICA SINIC, V29, P297; Edwards M, 2004, NATURE, V430, P881, DOI 10.1038/nature02808; Gárate-Lizárraga I, 2009, MAR POLLUT BULL, V58, P145, DOI 10.1016/j.marpolbul.2008.09.016; Glibert PM, 2018, ECOL STUD-ANAL SYNTH, V232, P1, DOI 10.1007/978-3-319-70069-4; Godhe A, 2015, ESTUAR COAST SHELF S, V162, P69, DOI 10.1016/j.ecss.2015.03.006; HALLEGRAEFF GM, 1992, MAR POLLUT BULL, V25, P186, DOI 10.1016/0025-326X(92)90223-S; Hameed Hameed Abbas, 2015, Marine Biodiversity Records, V8, pe150, DOI 10.1017/S1755267215001281; 韩舞鹰, 1991, 海洋科学, P64; Han W Y, 1998, MARINE CHEM S CHIN S, P1; Hao Y.J., 2016, NATURE RESOUR, V7, P184, DOI 10.4236/nr.2016.74017; Hinder SL, 2012, NAT CLIM CHANGE, V2, P271, DOI [10.1038/NCLIMATE1388, 10.1038/nclimate1388]; [桓清柳 Huan Qingliu], 2016, [海洋环境科学, Marine Environmental Science], V35, P908; [黄小平 Huang Xiaoping], 2002, [海洋环境科学, Marine Environmental Science], V21, P63; IPCC Intergovernmental Panel on Climate Change, CLIMATE CHANGE 2007; Jiang ZB, 2013, MAR POLLUT BULL, V76, P315, DOI 10.1016/j.marpolbul.2013.07.006; JONES KJ, 1990, ESTUAR COAST SHELF S, V30, P557, DOI 10.1016/0272-7714(90)90092-6; Kang DJ, 2010, J PHYS OCEANOGR, V40, P2539, DOI 10.1175/2010JPO4497.1; Keys M, 2018, BIOGEOSCIENCES, V15, P3203, DOI 10.5194/bg-15-3203-2018; Kim YO, 2000, MAR ECOL PROG SER, V204, P111, DOI 10.3354/meps204111; Kumar PS, 2018, CONT SHELF RES, V161, P20, DOI 10.1016/j.csr.2018.04.012; Li L, 2019, J OCEANOL LIMNOL, V37, P535, DOI 10.1007/s00343-019-8088-y; Li T, 2011, MAR ECOL PROG SER, V424, P75, DOI 10.3354/meps08974; Licea S., 2002, Harmful Algae 2002, P380; [林国红 Lin Guohong], 2017, [中国海洋大学学报. 自然科学版, Periodical of Ocean University of China], V47, P88; Lin JN, 2014, MAR POLLUT BULL, V88, P302, DOI 10.1016/j.marpolbul.2014.08.026; Lin X, 2012, HARMFUL ALGAE, V17, P14, DOI 10.1016/j.hal.2012.02.005; [林祖享 Lin Zuheng], 2002, [海洋环境科学, Marine environmental science], V21, P1; Liu DY, 2005, MAR POLLUT BULL, V50, P91, DOI 10.1016/j.marpolbul.2004.11.016; Lu Dou-ding, 2001, Chinese Journal of Oceanology and Limnology, V19, P337; Mulholland MR, 2018, ESTUAR COAST, V41, P1744, DOI 10.1007/s12237-018-0388-5; Qi Yuzao, 1997, Oceanologia et Limnologia Sinica, V28, P588; Qian H.L., 2000, Ecol. 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Oceanol. Limnol.	JUL	2021	39	4					1293	1304		10.1007/s00343-020-9082-0	http://dx.doi.org/10.1007/s00343-020-9082-0		JAN 2021	12	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	TS1RL					2025-03-11	WOS:000608967800006
J	Wang, J; Chen, JQ; Wang, SY; Li, FY; Fu, CC; Wang, Y				Wang, Jun; Chen, Jiaqi; Wang, Shaoyu; Li, Fuyu; Fu, Chengchong; Wang, Yan			Monoclonal Culture and Characterization of Symbiodiniaceae C1 Strain From the Scleractinian Coral <i>Galaxea fascicularis</i>	FRONTIERS IN PHYSIOLOGY			English	Article						Cladocopium sp; C1; monoclonal strain; Galaxea fascicularis; ultrastructure; stereology; growth rate	GYMNODINIUM MICROADRIATICUM; MARINE-INVERTEBRATES; MOLECULAR PHYLOGENY; RADIATION INCREASES; GENETIC-VARIATION; ZOOXANTHELLAE; STRESS; IDENTIFICATION; ENDOSYMBIONTS; SPECIFICITY	The symbiosis between cnidarian hosts and photosynthetic dinoflagellates of the family Symbiodiniaceae (i.e., zooxanthellae) provides the energy foundation of coral reef ecosystems in oligotrophic waters. The structure of symbiont biota and the dominant species of algal symbiont partly shape the environmental adaptability of coral symbiotes. In this study, the algal symbiont cells were isolated from the tentacles of Galaxea fascicularis, a hermatypic coral with obvious differentiation in heat resistance, and were cultured in vitro with an improved L1 medium. An algal monoclonal cell line was established using separated algal culture drops and soft agar plating method, and named by GF19C1 as it was identified as Cladocopium sp. C1 (Symbiodiniaceae) based on its ITS1, ITS2, and the non-coding region of the plastid psbA minicircle (psbA(ncr)) sequences. Most GF19C1 cells were at the coccoid stage of the gymnodinioid, their markedly thickened (ca. two times) cell wall suggests that they developed into vegetative cysts and have sexual and asexual reproductive potential. The average diameter of GF19C1 cells decreased significantly, probably due to the increasing mitotic rate. The chloroplasts volume density of GF19C1 was significantly lower than that of their symbiotic congeners, while the surface area density of thylakoids relative to volumes of chloroplasts was not significantly changed. The volume fraction of vacuoles increased by nearly fivefold, but there was no significant change in mitochondria and accumulation bodies. Light-temperature orthogonal experiments showed that, GF19C1 growth preferred the temperature 25 +/- 1 degrees C (at which it is maintained post-isolation) rather than 28 +/- 1 degrees C under the light intensity of 42 +/- 2 or 62 +/- 2 mu mol photons m(-2) s(-1), indicating an inertia for temperature adaptation. The optimum salinity for GF19C1 growth ranged between 28-32 ppt. The monoclonal culture techniques established in this study were critical to clarify the physiological and ecological characteristics of various algal symbiont species, and will be instrumental to further reveal the roles of algal symbionts in the adaptive differentiation of coral-zooxanthellae holobionts in future studies.	[Wang, Jun; Chen, Jiaqi; Wang, Shaoyu; Li, Fuyu; Fu, Chengchong; Wang, Yan] Hainan Univ, Coll Marine Sci, State Key Lab Marine Resource Utilizat South Chin, Haikou, Peoples R China	Hainan University	Wang, Y (通讯作者)，Hainan Univ, Coll Marine Sci, State Key Lab Marine Resource Utilizat South Chin, Haikou, Peoples R China.	ywang@hainanu.edu.cn			National Key R&D Program of China [2018YFC1406500]; Hainan Provincial Key RD Program [ZDYF2018108]	National Key R&D Program of China; Hainan Provincial Key RD Program	This work was supported by the National Key R&D Program of China (2018YFC1406500) and the Hainan Provincial Key R&D Program (ZDYF2018108).	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R., 2013, STUDY TROPICAL TYPIC; Watanabe T, 2005, MAR BIOTECHNOL, V7, P33, DOI 10.1007/s10126-004-3200-4; Wepfer PH, 2020, MAR ECOL PROG SER, V633, P71, DOI 10.3354/meps13177; Wham DC, 2017, PHYCOLOGIA, V56, P396, DOI 10.2216/16-86.1; Xu T., 2019, THESIS; Ying H, 2018, GENOME BIOL, V19, DOI 10.1186/s13059-018-1552-8	68	1	2	0	17	FRONTIERS MEDIA SA	LAUSANNE	AVENUE DU TRIBUNAL FEDERAL 34, LAUSANNE, CH-1015, SWITZERLAND	1664-042X			FRONT PHYSIOL	Front. Physiol.	JAN 18	2021	11								621111	10.3389/fphys.2020.621111	http://dx.doi.org/10.3389/fphys.2020.621111			10	Physiology	Science Citation Index Expanded (SCI-EXPANDED)	Physiology	QA2PL	33536938	Green Published, gold			2025-03-11	WOS:000613290200001
J	Piacsek, P; Behling, H; Gu, F; Venancio, IM; Lessa, DVO; Belem, A; Albuquerque, ALS				Piacsek, Patricia; Behling, Hermann; Gu, Fang; Venancio, Igor Martins; Lessa, Douglas V. O.; Belem, Andre; Albuquerque, Ana Luiza S.			Changes in sea surface hydrography and productivity in the western equatorial Atlantic since the last interglacial	PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY			English	Article						Dinoflagellate; Glacial-Interglacial; Intertropical Convergence Zone; Heinrich Stadials	WALLED DINOFLAGELLATE CYSTS; TROPICAL ATLANTIC; SELECTIVE PRESERVATION; NORTHEASTERN BRAZIL; ANNUAL CYCLE; CLIMATE; MARINE; CIRCULATION; PHYTOPLANKTON; ACCUMULATION	Scientific projections point to the increase of greenhouse gas levels in the atmosphere will turn the oceans warmer and, consequently, the upper layer of the thermohaline circulation will get thicker, restricting the productivity areas. Oligotrophic conditions will tend to prevail, and expanding the range of proxy data in oligotrophic oceans, across different climate scenarios, has the potential to improve predictions of climate models about how primary productivity will respond. Still, the variability of past primary production in the equatorial Atlantic remains elusive. We used organic-walled dinoflagellate cysts (dinocysts) assemblages to reconstruct changes in the sea surface hydrography and productivity in the western equatorial Atlantic over the last similar to 130 kyr. Four dinocysts assemblages were defined: open ocean, river outflow, neritic and nutricline assemblages. Multiple proxies were used to support the environmental changes evidenced by the observed variations in the dinocyst assemblages, such as the X-ray fluorescence (XRF) Ti/Ca ratio, and planktonic foraminifera abundances. We observed glacial-interglacial as well as the millennial-scale changes in the dinocyst assemblages. A clear glacial-interglacial pattern was marked by more autotrophs dinocysts over the interglacials and the prevalence of heterotrophs dinocysts during the glacial period. We pointed out the interchange of autotrophs assemblages (nutricline and open ocean) over the interglacials intervals, denoting divergences in nutrient availability. During the last glacial period, precipitation events occurred in northeastern Brazil due to southward displacements of the Intertropical Convergence Zone (ITCZ). The increase of precipitation boosted the freshwater input to the adjacent ocean, and the dinocyst assemblages oscillated in response to such freshwater/salinity changes. Over the glacial period, dinocysts with different nutritional requirements (autotrophs and heterotrophs) varied following the ITCZ displacements. Thus, in this study, we showed the influence of ocean-atmospheric processes on the ocean and investigated the productivity in an oligotrophic region over distinct past climatic backgrounds.	[Piacsek, Patricia; Venancio, Igor Martins; Lessa, Douglas V. O.; Albuquerque, Ana Luiza S.] Fluminense Fed Univ, Geochem Grad Program, Niteroi, RJ, Brazil; [Behling, Hermann; Gu, Fang] Univ Goettingen, Dept Palynol & Climate Dynam, Gottingen, Germany; [Venancio, Igor Martins] Natl Inst Space Res INPE, Ctr Weather Forecasting & Climate Studies CPTEC, Cachoeira Paulista, Brazil; [Belem, Andre] Fed Fluminense Univ, PPG Oceans & Earth Dynam, Niteroi, RJ, Brazil	Universidade Federal Fluminense; University of Gottingen; Instituto Nacional de Pesquisas Espaciais (INPE); Universidade Federal Fluminense	Piacsek, P (通讯作者)，Univ Fed Fluminense, Dept Geoquim, Outeiro Sao Joao Baptista S-N, Niteroi, RJ, Brazil.	Piacsekpatricia@gmail.com	Piacsek, Patricia/HTM-1265-2023; Venancio, Igor/I-5893-2014; Albuquerque, Ana/C-5167-2013; Belem, Andre/C-8682-2013	Belem, Andre/0000-0002-8865-6180; Venancio, Igor/0000-0003-3118-4247; Piacsek, Patricia/0000-0002-7993-3641	Brazil National Council for the Improvement of Higher Education (CAPES); CAPES [88887.156152/2017-00, 88881.161151/201701, 88887.091731/2014-01]; CNPq Project RAiN [406322/2018-0]	Brazil National Council for the Improvement of Higher Education (CAPES)(Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES)); CAPES(Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES)); CNPq Project RAiN	We thank R. Kowsman (CENPES/Petrobras) and Petrobras Core Repository staff (Macae/Petrobras) for providing sediment core GL1248. The financial support for this study is given to the first author from the Brazil National Council for the Improvement of Higher Education (CAPES). CAPES also financially supported Patricia S. Piacsek Borges with a scholarship from the CAPES-ASPECTO project (Grant 88887.091731/2014-01). Fang Gu is thanked for the support of dinocyst identification. CAPES financially supported I. M. V. with a scholarship (grant 88887.156152/2017-00 and 88881.161151/201701). This study was financed by the CNPq Project RAiN (grant 406322/2018-0).	[Anonymous], 1988, ADV ECOLOGICAL RES A; [Anonymous], 1989, J BIOGEOGR; Cuevas LA, 2019, PROG OCEANOGR, V173, P103, DOI 10.1016/j.pocean.2019.02.012; Barker S, 2009, NATURE, V457, P1097, DOI 10.1038/nature07770; BENNINGHOFF W. S., 1962, POLLEN ET SPORES, V4, P332; BERGER A, 1991, QUATERNARY SCI REV, V10, P297, DOI 10.1016/0277-3791(91)90033-Q; Bickert T., 1997, Proc. ODP Sci. 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Zonneveld KAF, 2013, REV PALAEOBOT PALYNO, V191, P1, DOI 10.1016/j.revpalbo.2012.08.003	77	5	5	2	14	ELSEVIER	AMSTERDAM	RADARWEG 29, 1043 NX AMSTERDAM, NETHERLANDS	0031-0182	1872-616X		PALAEOGEOGR PALAEOCL	Paleogeogr. Paleoclimatol. Paleoecol.	JAN 15	2021	562								109952	10.1016/j.palaeo.2020.109952	http://dx.doi.org/10.1016/j.palaeo.2020.109952			12	Geography, Physical; Geosciences, Multidisciplinary; Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Physical Geography; Geology; Paleontology	PN6JZ					2025-03-11	WOS:000604584600005
C	Sidabutar, T; Srimariana, ES			IOP	Sidabutar, T.; Srimariana, E. S.			Dinoflagellate cyst assemblages in surface sediment from Jakarta Bay	3RD INTERNATIONAL CONFERENCE ON FISHERIES AND MARINE SCIENCES	IOP Conference Series-Earth and Environmental Science		English	Proceedings Paper	3rd International Conference on Fisheries and Marine Sciences (INCOFIMS)	SEP 10, 2020	Univ Airlangga, Fac Fisheries & Marine, ELECTR NETWORK		Univ Airlangga, Fac Fisheries & Marine		HARMFUL ALGAL BLOOMS; EUTROPHICATION; ALEXANDRIUM; ATLANTIC	Dinoflagellate cysts play an essential role in the initiation, recurrence and geographical expansion of harmful algal blooms (HABs). The horizontal distribution and abundance of dinoflagellate cysts in marine sediments provide essential information in giving early warnings of the presence of toxic species and possible continuing recurrence of HABs in a given area. This research carried out in the waters of Jakarta Bay. Sediment samples collected from thirteen sampling stations using TFO gravity corer 2.1 cm diameter from sediment thickness 0-4 cm. The results showed that resting cysts belong to Gonyaulax, Alexandrium, Scrippsiella, Protoperidinium, Gymnodinium, Gyrodinium. Two of them, namely Gymnodinium sp and Alexandrium sp, known as toxic species. Cysts in the sediment thickness 0-4 cm mainly dominated by the group of Gonyaulax (Gonyaulacoid). Cyst abundance in the sediment depth-layer 0-2 cm is higher than in depth-layer 2-4 cm. The number of dino-cysts in sediment layer 0-2 cm ranged from 2.984 - 22.298 cysts cm(-3) while in the layer 2-4 cm the amount varies from 1.063 - 8.132 cysts cm(-3) of wet sediment. The result revealed that dino-cyst abundance is higher in the deposit collected from locations near to the coast. The assemblages of dinoflagellate resting cysts seemed to have a relation with some hydrological parameters.	[Sidabutar, T.] Res Ctr Oceanog LIPI, Jl Pasir Putih 1, Ancol Timur, Jakarta Utara, Indonesia; [Srimariana, E. S.] IPB Univ, Dept ITK FPIK, Dramaga Bogor, Indonesia	National Research & Innovation Agency of Indonesia (BRIN); Indonesian Institute of Sciences (LIPI)	Sidabutar, T (通讯作者)，Res Ctr Oceanog LIPI, Jl Pasir Putih 1, Ancol Timur, Jakarta Utara, Indonesia.	tumpaksid@gmail.com	Srimariana, Endang Sunarwati/GPK-6656-2022; Sidabutar, Tumpak/GPP-3873-2022	Srimariana, Endang Sunarwati/0000-0002-0381-4515				Anderson DM, 2002, ESTUARIES, V25, P704, DOI 10.1007/BF02804901; Anderson DM., 1984, AM CHEM SOC, P125; Anderson DM., 1995, IOC MANUALS GUIDES 3, P70; Anderson DM., 1995, IOC MAN GUIDES, V33, P229; Anderson DM, 2008, HARMFUL ALGAE, V8, P39, DOI 10.1016/j.hal.2008.08.017; ANDERSON DW, 1989, TITLE VII AT TWENTY-FIVE, P81; Azanza RV, 2004, PHYCOL RES, V52, P376; Bajarias FA., 1996, HARMFUL TOXIC ALGAL, P49; Baula IU, 2011, HARMFUL ALGAE, V11, P33, DOI 10.1016/j.hal.2011.07.002; Bravo I, 2006, EUR J PHYCOL, V41, P293, DOI 10.1080/09670260600810360; Dale B., 1983, P69; Dale B, 1999, ESTUAR COAST SHELF S, V48, P371, DOI 10.1006/ecss.1999.0427; Devillers R, 2000, MAR GEOL, V166, P103, DOI 10.1016/S0025-3227(00)00007-4; Figueroa RI, 2008, HARMFUL ALGAE, V7, P653, DOI 10.1016/j.hal.2008.02.005; Figueroa RI, 2009, PROTIST, V160, P285, DOI 10.1016/j.protis.2008.12.003; Furio Elsa F., 2012, Coastal Marine Science, V35, P20; Furio Elsa F., 2006, Coastal Marine Science, V30, P62; Habiba ZT., 2014, MAR POL B, V84, P172; Hallegraef G M., 2003, UNESCO, P540; Head MJ., 1996, PALYNOLOGY, V3, P197; Hilal A., 2015, FRESENIUS ENV B, V24; Joyce LB, 2005, HARMFUL ALGAE, V4, P309, DOI 10.1016/j.hal.2004.08.001; Lee BJ., 1994, EXPLOITATION MARINE, V2, P1; Lundholm N, 2011, PHYCOLOGIA, V50, P629, DOI 10.2216/11-16.1; Matsuoka K., 1989, ICLARM CONTRIBUTION, V585, P231; Matsuoka K., 1995, IOC DANIDA, P59; Matsuoka K., 2000, TECH GUIDE MODERN DI, P70; Morquecho L, 2003, BOT MAR, V46, P132, DOI 10.1515/BOT.2003.014; Ribeiro S, 2008, MAR MICROPALEONTOL, V68, P156, DOI 10.1016/j.marmicro.2008.01.013; Satta CT, 2014, ESTUAR COAST, V37, P646, DOI 10.1007/s12237-013-9705-1; Satta CT, 2010, DEEP-SEA RES PT II, V57, P256, DOI 10.1016/j.dsr2.2009.09.013; Sidabutar T., 2008, RCO INDONESIAN I SCI, P24; Sidharta BR., 2008, MAR RES INDONESIA, V33, P81; Silva MSD, 2011, INDIAN J GEO-MAR SCI, V40, P697; Tatiana Yu O, 2004, BOT MAR, V47, P184	35	1	1	0	3	IOP PUBLISHING LTD	BRISTOL	DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND	1755-1307			IOP C SER EARTH ENV	IOP Conf. Ser. Earth Envir. Sci.		2021	718								012091	10.1088/1755-1315/718/1/012091	http://dx.doi.org/10.1088/1755-1315/718/1/012091			9	Ecology; Fisheries; Marine & Freshwater Biology	Conference Proceedings Citation Index - Science (CPCI-S)	Environmental Sciences & Ecology; Fisheries; Marine & Freshwater Biology	BS0XR		gold			2025-03-11	WOS:000685167400091
J	Matcher, G; Lemley, DA; Adams, JB				Matcher, Gwynneth; Lemley, Daniel A.; Adams, Janine B.			Bacterial community dynamics during a harmful algal bloom of <i>Heterosigma akashiwo</i>	AQUATIC MICROBIAL ECOLOGY			English	Article						Bacterial metabarcoding; Ecological function; Eutrophication; Phytoplankton; Harmful algal bloom	DINOFLAGELLATE ALEXANDRIUM DINOPHYCEAE; DISSOLVED ORGANIC-MATTER; RED-TIDE ALGAE; TOXIC DINOFLAGELLATE; ALGICIDAL BACTERIA; CYST FORMATION; DIATOM BLOOM; PHYTOPLANKTON BLOOM; MICROALGAL BIOMASS; HIROSHIMA BAY	Phytoplankton bloom events result in distinct changes in the composition and availability of nutrients as well as physical conditions within aquatic ecosystems, resulting in significant effects on bacterial communities. Using a metabarcoding approach, this study investigated the effect of a harmful algal bloom (HAB) of Heterosigma akashiwo in the Sundays Estuary, South Africa, on bacterial community structures in this estuarine ecosystem over an entire bloom event. The occurrence of bacterial lineages occurring in both the oxygen-rich surface water and hypoxic bottom waters in this study reflects the respiratory flexibility and potential for both aerobic and anaerobic metabolism across a wide range of bacterial phylogenetic lineages. A close correlation between the bacterial community profiles and the physiological state of the bloom was observed, with Flavobacteria found in increased relative abundances during the H. akashiwo HAB. Flavobacteria are commonly reported in the literature associated with algal blooms, which is indicative of their central role in the degradation of algal-derived organic matter. Halieaceae were prevalent during the bloom, whilst Synechococcales, Cryomorphaceae and Sporichthyaceae were found to be positively correlated with the decay of the H. akashiwo bloom. Rhodobacteraceae correlated significantly with the H. akashiwo bloom; however, unlike the Rhodobacteraceae specific bloom-associated genera reported in literature (predominantly Roseobacter), up to 74 % of the Rhodobacteraceae sequence reads in this study were assigned to the genus Litorimicrobium. The distinct bacterial community profiles recorded throughout the H. akashiwo HAB can be attributed to the influence of the bloom-forming species as well as under-representation of estuarine-occurring HABs in the literature.	[Matcher, Gwynneth] South African Inst Aquat Biodivers, ZA-6140 Makhanda, South Africa; [Matcher, Gwynneth] Rhodes Univ, Dept Biochem & Microbiol, ZA-6140 Makhanda, South Africa; [Lemley, Daniel A.; Adams, Janine B.] Nelson Mandela Univ, Bot Dept, ZA-6031 Port Elizabeth, South Africa; [Lemley, Daniel A.; Adams, Janine B.] Nelson Mandela Univ, Inst Coastal & Marine Res, ZA-6031 Port Elizabeth, South Africa; [Lemley, Daniel A.; Adams, Janine B.] Nelson Mandela Univ, DSI NRF Res Chair Shallow Water Ecosyst, ZA-6031 Port Elizabeth, South Africa	National Research Foundation - South Africa; South African Institute for Aquatic Biodiversity; Rhodes University; Nelson Mandela University; Nelson Mandela University; Nelson Mandela University	Matcher, G (通讯作者)，South African Inst Aquat Biodivers, ZA-6140 Makhanda, South Africa.; Matcher, G (通讯作者)，Rhodes Univ, Dept Biochem & Microbiol, ZA-6140 Makhanda, South Africa.	g.matcher@saiab.ac.za	Lemley, Daniel/J-1328-2019; Adams, Janine/AAA-9865-2021	Matcher, Gwynneth/0000-0001-6206-696X; Lemley, Daniel Alan/0000-0003-0325-8499	National Research Foundation (NRF) of South Africa [120709]; DSI/NRF Research Chair in Shallow Water Ecosystems [84375]; Communities of Practice grant from the NRF [GUN: 110612]; Academy of Finland (AKA) [120709] Funding Source: Academy of Finland (AKA)	National Research Foundation (NRF) of South Africa(National Research Foundation - South Africa); DSI/NRF Research Chair in Shallow Water Ecosystems; Communities of Practice grant from the NRF; Academy of Finland (AKA)(Research Council of Finland)	The use of infrastructure and equipment provided by the NRF_SAIAB Aquatic Genomics Research Platform is acknowledged. The National Research Foundation (NRF) of South Africa is thanked for providing postdoctoral fellowship funding to D.A.L. (Grant Number: 120709). Furthermore, this work is based on the research supported by the DSI/NRF Research Chair in Shallow Water Ecosystems (UID: 84375) and a Communities of Practice grant from the NRF (GUN: 110612) that provided the necessary funding to undertake field surveys and laboratory analyses. Opinions expressed and conclusions arrived at are those of the authors and do not necessarily represent the official views of the funding agency. Finally, the authors also thank Ms. Patricia Smailes for assisting with the enumeration and identification of phytoplankton and Mr. Eugin Bornman for contributing greatly to sample collection.	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Microb. Ecol.		2021	86						153	167		10.3354/ame01963	http://dx.doi.org/10.3354/ame01963			15	Ecology; Marine & Freshwater Biology; Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Microbiology	SX8MI					2025-03-11	WOS:000665451400011
J	Duque-Herrera, AF; Helenes, J; Flores-Trujillo, JG; Ruiz-Fernández, AC; Sánchez-Cabeza, JA				Duque-Herrera, Andres-Felipe; Helenes, Javier; Flores-Trujillo, Juan-Gabriel; Ruiz-Fernandez, Ana-Carolina; Sanchez-Cabeza, Joan-Albert			Dinoflagellate cysts and ENSO-PDO climate forcing in the southern Gulf of California	PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY			English	Article						Climatic events; Marine primary productivity; Laminated sediments; Pescadero Basin; El Nino-Southern Oscillation; Pacific Decadal Oscillation	PRIMARY PRODUCTIVITY; SURFACE SEDIMENTS; HYDROGRAPHIC CONDITIONS; GYMNODINIUM-CATENATUM; ACCUMULATION RATES; ANNUAL VARIABILITY; MARINE-SEDIMENTS; PACIFIC; NORTH; BASIN	This paper presents a high-resolution analysis of dinoflagellate cyst groups (1959 to 2009), in the southern Gulf of California (GoC). We analyzed 100 samples of laminated sediments with an effective sampling resolution of similar to 7 months. Our primary goal is to clarify the relation between changes in these groups and the climate forcing defined by the El Nino Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO) indices. Principal component analysis indicates three groups (A1, A2, and A3). A1 and A3 are mostly constituted by dinoflagellate cysts of heterotrophic taxa, while A2 is composed mainly of autotrophic taxa. Strong El Nino events decrease the contribution of all dinoflagellate cyst groups, while extreme La Nina events increase the contribution of the A2 and A3 groups. Also, the PDO modulates the marine productivity in the southern GoC, with cold phases increasing productivity, while the warm stages decrease productivity. As with climatic events in the southern GoC, autotrophic and heterotrophic taxa of dinoflagellate cysts respond clearly, when PDO and ENSO are in phase. Finally, dinoflagellate cyst concentrations in laminated sediments can be used regionally, as a chronostratigraphic tool in the last 50 years.	[Duque-Herrera, Andres-Felipe; Helenes, Javier] Ctr Invest Cient & Educ Super Ensenada, Dept Geol, Ciencias Tierra, Carretera Ensenada Tijuana,3918 Zona Playitas, Ensenada 22860, Baja California, Mexico; [Flores-Trujillo, Juan-Gabriel] Univ Autonoma Carmen, Dependencia Acad Ingn & Tecnol, Calle 56,4 Esquina Av Concordia, Ciudad del Carmen 24180, Campeche, Mexico; [Ruiz-Fernandez, Ana-Carolina] Univ Nacl Autonoma Mexico, Inst Ciencias Mar & Limnol, Unidad Acad Mazatlan, Av Joel Montes Camarena S-N, Mazatlan 82040, Sinaloa, Mexico; [Sanchez-Cabeza, Joan-Albert] Univ Nacl Autonoma Mexico, Inst Ciencias Mar & Limnol, Unidad Proc Ocean & Costeros, Mexico City 04510, DF, Mexico	CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; Universidad Autonoma del Carmen; Universidad Nacional Autonoma de Mexico; Universidad Nacional Autonoma de Mexico	Helenes, J (通讯作者)，Ctr Invest Cient & Educ Super Ensenada, Dept Geol, Ciencias Tierra, Carretera Ensenada Tijuana,3918 Zona Playitas, Ensenada 22860, Baja California, Mexico.	aduque@cicese.edu.mx; jhelenes@cicese.mx; gfloresft@gmail.com; caro@ola.icmyl.unam.mx; jasanchez@cmarl.unam.mx	Ruiz-Fernández, Ana Carolina/ABG-6985-2020	RUIZ-FERNANDEZ, ANA CAROLINA/0000-0002-2515-1249	CONACYT - CICESE [300334]; National Council for Science and Technology, Mexico [155995]; Earth Science Division at CICESE [644289]	CONACYT - CICESE; National Council for Science and Technology, Mexico(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); Earth Science Division at CICESE	Thanks to CONACYT - CICESE, for financial support to the first author (scholarship number 300334) throughout this study. This study was supported by the National Council for Science and Technology, Mexico (grant no. 155995) and the Earth Science Division at CICESE (grant no. 644289) to the second author. We thank Edna Collins (Geology Department, CICESE) for her participation in the processing of palynological samples, and Libia Hascibe Perez-Bernal (Institute of Marine Sciences and Limnology, UNAM) for her assistance in core dating. Thanks to Jonas De Basabe and Mario Gonzalez for their valuable contributions during the study, as well as to Lita Castaneda for their assistance in managing the databases. Finally thanks to the reviewers Vera Pospelova and the anonymous reviewer #2, for their constructive and insightful comments that helped improve the manuscript.	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Paleoclimatol. Paleoecol.	DEC 15	2020	560								110055	10.1016/j.palaeo.2020.110055	http://dx.doi.org/10.1016/j.palaeo.2020.110055			16	Geography, Physical; Geosciences, Multidisciplinary; Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Physical Geography; Geology; Paleontology	OU0RY		Bronze			2025-03-11	WOS:000591245000053
J	Gottschling, M; Czech, L; Mahé, F; Adl, S; Dunthorn, M				Gottschling, Marc; Czech, Lucas; Mahe, Frederic; Adl, Sina; Dunthorn, Micah			The Windblown: Possible Explanations for Dinophyte DNA in Forest Soils	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						Biodiversity; biogeography; dinoflagellates; environmental DNA; phylogeney	MOLECULAR CHARACTERIZATION; TAXONOMIC CLARIFICATION; PHYLOGENETIC ANALYSIS; ELECTRON-MICROSCOPY; LSU RDNA; SP-NOV; DIVERSITY; THORACOSPHAERACEAE; BIOGEOGRAPHY; FORAMINIFERA	Dinophytes are widely distributed in marine- and fresh-waters, but have yet to be conclusively documented in terrestrial environments. Here, we evaluated the presence of these protists from an environmental DNA metabarcoding dataset of Neotropical rainforest soils. Using a phylogenetic placement approach with a reference alignment and tree, we showed that the numerous sequencing reads that were phylogenetically placed as dinophytes did not correlate with taxonomic assignment, environmental preference, nutritional mode, or dormancy. All the dinophytes in the soils are rather windblown dispersal units of aquatic species and are not biologically active residents of terrestrial environments.	[Gottschling, Marc] Ludwig Maximilians Univ Munchen, GeoBio Ctr, Dept Biol Systemat Bot & Mykol, D-80638 Munich, Germany; [Czech, Lucas] Heidelberg Inst Theoret Studies, Computat Mol Evolut Grp, D-69118 Heidelberg, Germany; [Czech, Lucas] Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA; [Mahe, Frederic] CIRAD, UMR BGPI, F-34398 Montpellier, France; [Mahe, Frederic] Univ Montpellier, CIRAD, IRD, Montpellier SupAgro,BGPI, Montpellier, France; [Adl, Sina] Univ Saskatchewan, Coll Agr & Bioresources, Dept Soil Sci, Saskatoon, SK S7N 5A8, Canada; [Dunthorn, Micah] Univ Duisburg Essen, Fac Biol, Eukaryot Microbiol, Univ Str 5, D-45141 Essen, Germany; [Dunthorn, Micah] Univ Duisburg Essen, Ctr Water & Environm Res ZWU, D-45141 Essen, Germany	University of Munich; Heidelberg Institute for Theoretical Studies; Carnegie Institution for Science; CIRAD; Institut de Recherche pour le Developpement (IRD); CIRAD; Institut Agro; Montpellier SupAgro; Universite de Montpellier; University of Saskatchewan; University of Duisburg Essen; University of Duisburg Essen	Dunthorn, M (通讯作者)，Univ Duisburg Essen, Fac Biol, Eukaryot Microbiol, Univ Str 5, D-45141 Essen, Germany.	micah.dunthorn@uni-due.de	Czech, Lucas/AAF-8722-2021; Mahé, Frédéric/AAR-8568-2021; Adl, Sina/R-3187-2016	Czech, Lucas/0000-0002-1340-9644; Mahe, Frederic/0000-0002-2808-0984; Dunthorn, Micah/0000-0003-1376-4109; Adl, Sina/0000-0001-6324-6065	Deutsche Forschungsgemeinschaft [DU1319/5-1]	Deutsche Forschungsgemeinschaft(German Research Foundation (DFG))	We thank Matthew Parrow and Gerard Versteegh for helpful edits, and Alexandros Stamatakis for computational support. Funding came from the Deutsche Forschungsgemeinschaft (grant DU1319/5-1) to MD.	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Eukaryot. Microbiol.	JAN	2021	68	1								10.1111/jeu.12833	http://dx.doi.org/10.1111/jeu.12833		DEC 2020	6	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	PV2LX	33155377	Green Submitted, Green Published, hybrid			2025-03-11	WOS:000597253800001
J	Bucci, AF; Thomas, AC; Cetinic, I				Bucci, Andre F.; Thomas, Andrew C.; Cetinic, Ivona			Interannual Variability in the Thermal Habitat of <i>Alexandrium catenella</i> in the Bay of Fundy and the Implications of Climate Change	FRONTIERS IN MARINE SCIENCE			English	Article						Alexandrium catenella; harmful algal blooms; thermal habitat; freshwater discharge; stratification; climate change; phenology shifts	HARMFUL ALGAL BLOOMS; RED TIDE DINOFLAGELLATE; NORTH-ATLANTIC; SHELLFISH TOXICITY; PHYTOPLANKTON BLOOM; CONTINENTAL-SHELF; MYTILUS-EDULIS; RESTING CYSTS; GULF; MAINE	Globally, harmful algal blooms (HABs) are an increasing problem. In the Gulf of Maine and Bay of Fundy, blooms of the toxic dinoflagellate Alexandrium catenella are annually recurrent phenomena. As this region is one of the most rapidly warming areas of the global ocean, an improved understanding of the mechanisms driving the initiation of local A. catenella blooms, their interannual variability and the implications of future climate change is critical to local monitoring strategies and marine resources management. A 27-year (1988-2014) time series of weekly A. catenella cell counts from the Bay of Fundy and concurrent satellite-measured sea surface temperature, freshwater discharge from the St. John River and wind-driven turbulence are compared to assess their relationship to variability in bloom phenology metrics. The mean thermal habitat associated with early detection of A. catenella is 6.5 +/- 1.6 degrees C, whereas that of bloom initiation averages 9.2 +/- 1.5 degrees C. Both thermal habitats for A. catenella are trending earlier over the study period. Bloom initiations that precede the arrival of the thermal habitat mean (occur in colder water) are associated with higher spring freshwater discharge and are generally weaker blooms. Increased spring freshwater discharge is also associated with earlier bloom initiation and earlier maximum concentration dates. No significant relationship was observed with the strength of wind-driven mixing. Removal of the mean thermal seasonal cycle shows that surface temperature anomalies have a strong negative relationship to the bloom phenology metrics and arrival of thermal habitat: warmer years are linked to earlier arrival of thermal habitats (similar to 12 days degrees C-1) and earlier detection and bloom initiation dates (similar to 33 days degrees C-1). Using these relationships and present trends in Bay of Fundy surface temperature warming over the period 1982-2019, we project the arrival dates of bloom thermal habitat and bloom phenology metrics out to the middle of this century. Based on current rates of sea surface temperature change, bloom phenology metrics (e.g., bloom initiation, early detection), can be expected to shift 1-2 months earlier in the season by mid-century. Such changes in the phenology of A. catenella blooms will need to be incorporated into both monitoring strategies and forecasting models for the region.	[Bucci, Andre F.; Thomas, Andrew C.] Univ Maine, Sch Marine Sci, Orono, ME 04469 USA; [Cetinic, Ivona] NASA, Ocean Ecol Lab, Goddard Space Flight Ctr, Greenbelt, MD USA; [Cetinic, Ivona] Univ Space Res Assoc, GESTAR, Columbia, MD USA	University of Maine System; University of Maine Orono; National Aeronautics & Space Administration (NASA); NASA Goddard Space Flight Center; Universities Space Research Association (USRA)	Bucci, AF (通讯作者)，Univ Maine, Sch Marine Sci, Orono, ME 04469 USA.	andre.bucci@maine.edu	Bucci, Andre/M-3322-2015; Cetinic, Ivona/GSI-5613-2022	, Andrew/0000-0002-9869-5765	NASA [NNX16AG59G, NNX16AQ94A]; NERACOOS; NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission; NASA [904719, NNX16AG59G] Funding Source: Federal RePORTER	NASA(National Aeronautics & Space Administration (NASA)); NERACOOS; NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission; NASA(National Aeronautics & Space Administration (NASA))	Funding for this work was provided by NASA through grants NNX16AG59G and NNX16AQ94A, byNASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission, and by NERACOOS.	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Mar. Sci.	DEC 7	2020	7								587990	10.3389/fmars.2020.587990	http://dx.doi.org/10.3389/fmars.2020.587990			15	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	PH4PO		gold			2025-03-11	WOS:000600396900001
J	Seveno, J; Even, Y; Le Gac, M				Seveno, Julie; Even, Yasmine; Le Gac, Mickael			Strong constitutive expression divergence among strains but no evidence of differential expression associated with sexual reproduction in <i>Alexandrium</i> <i>minutum</i>	HARMFUL ALGAE			English	Article						Sexual reproduction; Alexandrium minutum; Gene expression; Mating	LIFE-CYCLES; SEQUENCE; DINOPHYCEAE; PROTEIN; ROLES	Sexual reproduction remains poorly characterized in dinoflagellates. This is especially the case at the molecular level. Here crossing experiments were performed among strains of the toxic dinoflagellate Alexandrium minutum belonging to two genetically divergent groups. Gene expression was compared between sexually compatible and incompatible crosses at the time of gamete fusion and resting cyst (similar to zygote) formation. Not a single transcript was identified as differentially expressed between compatible and incompatible crosses at these two crucial time points of the dinoflagellate life cycle. However, several thousands of transcripts displayed constitutive expression differences between strains. This was especially the case between the strains belonging to the genetically divergent groups. A few hundreds of transcripts were also identified as differentially expressed between strains belonging to opposite mating types. Some of these transcripts displayed homology with the SxtA protein, known to be involved in saxitoxin production in cyanobacteria, as well as with proteins potentially involved in mating in fungi.	[Seveno, Julie; Le Gac, Mickael] IFREMER, DYNECO PELAGOS, F-29280 Plouzane, France; [Seveno, Julie] Le Mans Univ, Lab Mer Mol Sante, F-72000 Le Mans, France; [Even, Yasmine] Technopole Brest Iroise, Inst Univ Europeen Mer, CNRS UBO, Lab Sci Environm Marin,UMR 6539, F-29280 Plouzane, France	Ifremer; Le Mans Universite; Centre National de la Recherche Scientifique (CNRS); CNRS - Institute of Ecology & Environment (INEE); Ifremer; Institut de Recherche pour le Developpement (IRD); Universite de Bretagne Occidentale; Institut Universitaire Europeen de la Mer (IUEM)	Le Gac, M (通讯作者)，IFREMER, DYNECO PELAGOS, F-29280 Plouzane, France.	mickael.le.gac@ifremer.fr		Le Gac, Mickael/0000-0001-6451-5781; Seveno, Julie/0000-0002-2196-1172	Ifremer	Ifremer	This work was supported by a financial support from Ifremer. We acknowledge Pascale Malestroit for crossing experiment, Julien Quere for RNA extraction and library preparation, GetPlage for sequencing, SebiMer for bioinformatics support, and three anonymous reviewers for constructive comments.	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J	Bewernitz, MA; Lovett, AC; Gower, LB				Bewernitz, Mark A.; Lovett, Archana C.; Gower, Laurie B.			Liquid-Solid Core-Shell Microcapsules of Calcium Carbonate Coated Emulsions and Liposomes	APPLIED SCIENCES-BASEL			English	Article						microcapsules; biodegradable particles; PILP process; liposome coating; emulsion coating; biomimetic processing		Featured Application Biodegradable Core-Shell Microcapsules for liquid soluble active agents. Micron-sized core-shell particles consisting of a calcium carbonate (CaCO3) mineral shell and a fluidic core were generated using a biomimetic approach, for the purpose of use as biodegradable microcapsules for release of active agents. Dinoflagellate cysts, unicellular organisms which deposit a protective hard mineral shell around their soft and fluidic cellular interior, served as our inspiration. Using the biomimetic polymer-induced liquid-precursor (PILP) mineralization process, calcium carbonate coatings were deposited on charged emulsion droplets and liposomes. Light microscopy, scanning electron microscopy, polarized light microscopy, X-ray diffraction, and confocal fluorescence microscopy were used to demonstrate that smooth CaCO3 mineral coatings can be deposited onto the high curvature surfaces of emulsions and liposomes to yield micron-sized microcapsules for the effective entrapment of both hydrophobic and hydrophilic active agents. These biodegradable and biocompatible CaCO3 microcapsules are novel systems for producing a powdered form of fluid-containing capsules for storage and transport of pharma/chemical agents. They may be used in lieu of, or in conjunction with, existing microcapsule delivery approaches, as well as providing a convenient foundation for which polymeric coatings could be further applied, allowing for more complex targeting and/or chemical-release control.	[Bewernitz, Mark A.] Univ Florida, Dept Biomed Engn, Gainesville, FL 32611 USA; [Lovett, Archana C.; Gower, Laurie B.] Univ Florida, Dept Mat Sci & Engn, Gainesville, FL 32611 USA	State University System of Florida; University of Florida; State University System of Florida; University of Florida	Gower, LB (通讯作者)，Univ Florida, Dept Mat Sci & Engn, Gainesville, FL 32611 USA.	bewernitzmark@gmail.com; arch0618@gmail.com; lgower@mse.ufl.edu	Gower, Laurie/A-5947-2008	Gower, Laurie/0000-0003-2927-5406	National Science Foundation [DMR-0710605]; Particle Engineering Research Center (PERC) at the University of Florida; National Science Foundation (NSF) [EEC-9402989]; National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) of the National Institutes of Health (NIH) [R01DK092311]	National Science Foundation(National Science Foundation (NSF)); Particle Engineering Research Center (PERC) at the University of Florida; National Science Foundation (NSF)(National Science Foundation (NSF)); National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) of the National Institutes of Health (NIH)(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Diabetes & Digestive & Kidney Diseases (NIDDK))	This material is based upon work supported by the National Science Foundation under Grant No. DMR-0710605, and initial studies by the Particle Engineering Research Center (PERC) at the University of Florida, supported by the National Science Foundation (NSF) Grant No. EEC-9402989. Part of the research reported in this publication was supported by the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) of the National Institutes of Health (NIH) under Award Number R01DK092311. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.	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Sci.-Basel	DEC	2020	10	23							8551	10.3390/app10238551	http://dx.doi.org/10.3390/app10238551			18	Chemistry, Multidisciplinary; Engineering, Multidisciplinary; Materials Science, Multidisciplinary; Physics, Applied	Science Citation Index Expanded (SCI-EXPANDED)	Chemistry; Engineering; Materials Science; Physics	PC6AM		gold			2025-03-11	WOS:000597081400001
J	Lim, YK; Baek, SH; Seo, MH; Choi, KH				Lim, Young Kyun; Baek, Seung Ho; Seo, Min Ho; Choi, Keun-Hyung			Succession of a phytoplankton and mesozooplankton community in a coastal area with frequently occurring algal blooms	JOURNAL OF SEA RESEARCH			English	Article						Succession; Nutrient stoichiometry; Phytoplankton community; Mesozooplankton community; Gelatinous zooplankton; Heterotrophic noctiluca	EAST CHINA SEA; ZOOPLANKTON COMMUNITY; NOCTILUCA-SCINTILLANS; COPEPOD COMMUNITY; TEMPORAL PATTERNS; NITRATE UPTAKE; SOUTHERN SEA; RESTING EGGS; WATERS; SUMMER	We examined seasonal succession in a phytoplankton and mesozooplankton community in open coastal waters with frequently occurring harmful algal blooms. Chlorophyll a (Chl a) concentration was positively related to the N/P/Si ratio, suggesting that nitrate is a major limiting nutrient for phytoplankton biomass increase. Heterotrophic red Noctiluca, but not toxic dinoflagellate, abundance showed a negative trend with both Chl a and mesozooplankton abundance. The phytoplankton community showed a clear seasonal succession, with an increased abundance of dinoflagellates in the summer community (June-September), which was distinctive from the autumn-winter-spring community (October-May) that was dominated by diatoms. A mesozooplankton community shift followed, with a lag of a couple of months, in the late August to December community that was associated with subtropical copepods. The other community from February to August is associated with marine cladocerans. Although the most dominant mesozooplankton of year was copepod at a rate of over 70%, coexisting gelatinous plankton such as appendicularians and Noctiluca, which may compete with copepods for prey could affect to copepod production in the region.	[Lim, Young Kyun; Baek, Seung Ho] KIOST Korea Inst Ocean Sci & Technol, Risk Assessment Res Ctr, Geoje 53201, South Korea; [Lim, Young Kyun; Baek, Seung Ho] Univ Sci & Technol, Dept Ocean Sci, Daejeon 34113, South Korea; [Seo, Min Ho] Marine Ecol Res Ctr, Yeosu 59697, South Korea; [Choi, Keun-Hyung] Chungnam Natl Univ, Dept Ocean Environm Sci, 99 Daehak Ro Yusung Gu, Daejeon 34134, South Korea	Korea Institute of Ocean Science & Technology (KIOST); University of Science & Technology (UST); Chungnam National University	Choi, KH (通讯作者)，Chungnam Natl Univ, Dept Ocean Environm Sci, 99 Daehak Ro Yusung Gu, Daejeon 34134, South Korea.	keunhchoi@cnu.ac.kr		BAEK, SEUNG HO/0000-0002-5402-2518	Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning [NRF2016M1A5A1027456]; Chungnam National university	Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning(National Research Foundation of KoreaMinistry of Science, ICT & Future Planning, Republic of Korea); Chungnam National university	This work was supported by the Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF), which was funded by the Ministry of Science, ICT & Future Planning [grant number NRF2016M1A5A1027456]. Funding to K.H. Choi was provided by Chungnam National university.	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Sea Res.	DEC	2020	166								101961	10.1016/j.seares.2020.101961	http://dx.doi.org/10.1016/j.seares.2020.101961			7	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	OU2KN					2025-03-11	WOS:000591362500001
J	Luo, ZH; Mertens, KN; Gu, HF; Wang, N; Wu, YR; Uttayarnmanee, P; Pransilpa, M; Roeroe, KA				Luo, Zhaohe; Mertens, Kenneth Neil; Gu, Haifeng; Wang, Na; Wu, Yiran; Uttayarnmanee, Praderm; Pransilpa, Mitila; Roeroe, Kakaskasen Andreas			Morphology, ultrastructure and molecular phylogeny of <i>Johsia chumphonensis</i> gen. et sp. nov. and <i>Parvodinium parvulum</i> comb. nov. (Peridiniopsidaceae, Dinophyceae)	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						Cyst; dinoflagellate; eyespot; freshwater; immotile cell; Peridinium parvulum	FRESH-WATER DINOFLAGELLATE; PERIDINIUM	The family Peridiniopsidaceae encompasses mainly freshwater species of the genera Peridiniopsis, Palatinus and Parvodinium. Only one benthic, marine species 'Scrippsiella' hexapraecingula has been attributed to this family. Here we established five strains by isolating single Parvodinium-like cells from the marine Gulf of Thailand, Hainan Island waters (China), off Manado (Indonesia) and from a freshwater reservoir in Fuzhou (China). All strains were examined with light, scanning and transmission electron microscopy, and their SSU, ITS-5.8S and partial LSU rRNA regions were sequenced. Four marine strains share a plate formula of Po, cp, X, 4 ', 2a, 6 '', 6C, 4S, 5 ''', 2 '''' and are herein attributed to a new genus Johsia as J. chumphonensis gen. et sp. nov. Its theca is characterized by an epitheca 1.5 times as long as the hypotheca in dorsal view and a 2a plate about half the size of 1a. A type B eyespot was observed in J. chumphonensis comprising two rows of lipid globules within a chloroplast with a single row of crystals overlying the eyespot. Production of spherical cysts was observed in culture. The freshwater strain shows a plate pattern of Po, cp, X, 4 ', 2a, 7 '', 6C, 5S, 5 ''', 2 '''', characterized by two unequal antapical plates and a lack of antapical spines, fitting the description of Peridinium parvulum, which was transferred to Parvodinium as P. parvulum comb. nov. In this species, a type A eyespot was observed comprising four rows of lipid globules within a chloroplast. A molecular phylogeny was inferred based on concatenated data from SSU, ITS-5.8S and partial LSU rRNA gene sequences using maximum likelihood and Bayesian inference. Our results show that Johsia is nested within the Peridiniopsidaceae and is a sister clade to Peridiniopsis borgei and the strain UTEX1948 identified as 'Scrippsiella' hexapraecingula with three anterior intercalary plates.	[Luo, Zhaohe; Gu, Haifeng; Wang, Na; Wu, Yiran] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Mertens, Kenneth Neil] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Gu, Haifeng] Nanjing Univ Informat Sci & Technol, Sch Marine Sci, Nanjing 210044, Peoples R China; [Uttayarnmanee, Praderm] Marine & Coastal Resources Res & Dev Ctr, Dept Marine & Coastal Resources, Chumphon 86000, Thailand; [Pransilpa, Mitila] Marine & Coastal Resources Res & Dev Ctr, Dept Marine & Coastal Resources, Rayong 21170, Thailand; [Roeroe, Kakaskasen Andreas] Sam Ratulangi Univ, Sulawesi Utara 95115, Manado, Indonesia	Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; Ifremer; Nanjing University of Information Science & Technology; Universitas Sam Ratulangi	Gu, HF (通讯作者)，Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China.; Gu, HF (通讯作者)，Nanjing Univ Informat Sci & Technol, Sch Marine Sci, Nanjing 210044, Peoples R China.	guhaifeng@tio.org.cn	Roeroe, Kakaskasen/ABB-9466-2021; Luo, Zhaohe/ITT-7163-2023; Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015; Gu, Haifeng/ADN-4528-2022	Mertens, Kenneth/0000-0003-2005-9483; Gu, Haifeng/0000-0002-2350-9171; Roeroe, Kakaskasen Andreas/0000-0002-5528-0690; Luo, Zhaohe/0000-0001-8662-2414	National Natural Science Foundation of China [41676117]; Scientific Research Foundation of Third Institute of Oceanography, MNR [2019018]; China-ASEAN Maritime Cooperation Fund; National Programme on Global Change and AirSea Interaction	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Scientific Research Foundation of Third Institute of Oceanography, MNR; China-ASEAN Maritime Cooperation Fund; National Programme on Global Change and AirSea Interaction	This work was supported by National Natural Science Foundation of China [41676117], Scientific Research Foundation of Third Institute of Oceanography, MNR [2019018], China-ASEAN Maritime Cooperation Fund and the National Programme on Global Change and AirSea Interaction.	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J	Okumura, Y; Matsuoka, H; Arakawa, H; Tokanai, F; Suzuki, A; Irizuki, T; Kajita, H; Hara, M				Okumura, Yutaka; Matsuoka, Hiromi; Arakawa, Hisayuki; Tokanai, Fuyuki; Suzuki, Atsushi; Irizuki, Toshiaki; Kajita, Hiroto; Hara, Motoyuki			The influence and impact of tsunamis on the microorganism assembly of Nagatsura-Ura Lagoon, Miyagi, northeastern Japan	FISHERIES SCIENCE			English	Article						Tsunami; Environmental DNA; Phytoplankton; Sediment cores	GREAT EAST JAPAN; SENDAI BAY; ALEXANDRIUM-CYSTS; NORTHERN JAPAN; PACIFIC COAST; COMMUNITY; SEDIMENT; DIATOM; DNA; FUKUSHIMA	Two sediment cores were collected from two sites in Nagatsura-Ura Lagoon, the mouth of which was destroyed in the 2011 Tohoku-oki tsunami. Although sediment conditions differed widely between the central and inner parts of the lagoon, we could identify traces of the 2011 Tohoku-oki tsunami at both, and those of earlier tsunamis in the inner part of the lagoon. Chlorophyll a maxima were observed at core depths between 62 and 72 cm in the central part of the lagoon. We inferred that this horizon correlated with the 2011 Tohoku-oki tsunami deposit. In the inner part of the lagoon, the horizon at core depths of 116-142 cm could be aged to the 1400s, and is thus thought to have been formed as a consequence of the Kyotoku earthquake of 1454. The dinoflagellate Alexandrium spp. accounted for similar to 22.6% of the total read numbers of phytoplankton from next generation sequencing. Diatoms made up the second largest group of phytoplankton, with Chaetoceros spp. representing similar to 10.5% of the total. The vertical profiles of dinoflagellate and diatom compositions showed little change. Although traces of tsunamis were observed in cores from the lagoon, and in nearby closed bays, we believe that the microbial composition has changed only slightly in the lagoon due to poor seawater exchange through the closed lagoon mouth.	[Okumura, Yutaka] Japan Fisheries Res & Educ Agcy, Fisheries Technol Inst, 3-27-5 Shinhama, Shiogama, Miyagi 9850001, Japan; [Matsuoka, Hiromi] Kochi Univ, Fac Sci & Technol, 2-5-1 Akebono, Kochi, Kochi 7808520, Japan; [Arakawa, Hisayuki] Tokyo Univ Marine Sci & Technol, Grad Sch Marine Sci & Technol, Minato Ku, 5-7,Konan 4, Tokyo 1088477, Japan; [Tokanai, Fuyuki] Yamagata Univ, Ctr Accelerator Mass Spectrometry, 19-5 Kanakameyujiri, Kaminoyama, Yamagata 9993101, Japan; [Suzuki, Atsushi] Natl Inst Adv Ind Sci & Technol, 1-1-1 Higashi, Tsukuba, Ibaraki 3058567, Japan; [Irizuki, Toshiaki] Shimane Univ, Inst Environm Syst Sci, Univ Acad Assembly, 1060 Nishikawatsu, Matsue, Shimane 6908504, Japan; [Kajita, Hiroto] Univ Tokyo, Atmosphere & Ocean Res Inst, 5-1-5 Kashiwanoha, Kashiwa, Chiba 2778564, Japan; [Hara, Motoyuki] Tohoku Univ, Grad Sch Agr Sci, Aoba Ku, 468-1 Aramaki, Sendai, Miyagi 9800845, Japan	Japan Fisheries Research & Education Agency (FRA); Kochi University; Tokyo University of Marine Science & Technology; Yamagata University; National Institute of Advanced Industrial Science & Technology (AIST); Shimane University; University of Tokyo; Tohoku University	Okumura, Y (通讯作者)，Japan Fisheries Res & Educ Agcy, Fisheries Technol Inst, 3-27-5 Shinhama, Shiogama, Miyagi 9850001, Japan.	okumura@affrc.go.jp	Kajita, Hiroto/AAC-5948-2022; Suzuki, Atsushi/L-6120-2018	Kajita, Hiroto/0000-0003-0399-6483; Suzuki, Atsushi/0000-0002-0266-5765; Okumura, Yutaka/0000-0003-2750-3081	Japan Society for the Promotion of Science [18H03414]; Tohoku Marine Science Project of the Reconstruction Agency, Japan; Grants-in-Aid for Scientific Research [18H03414] Funding Source: KAKEN	Japan Society for the Promotion of Science(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); Tohoku Marine Science Project of the Reconstruction Agency, Japan; Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	We would like to thank Prof. M. Okamura (Kochi University) for his analysis of the sediment cores, Ms. M. Ohnuma (Tokyo University of Marine Science and Technology) for analyzing the grain size of the sediments, and IDEA Company for the topography measurements. This work was supported by a Grant-in-Aid for Scientific Research B (18H03414) from the Japan Society for the Promotion of Science, and a Tohoku Marine Science Project (a grant to assist with recovery from earthquake damage) of the Reconstruction Agency, Japan.	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Sci.	JAN	2021	87	1					121	130		10.1007/s12562-020-01472-8	http://dx.doi.org/10.1007/s12562-020-01472-8		NOV 2020	10	Fisheries	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries	PU0JX					2025-03-11	WOS:000587264700001
J	Li, Z; Mertens, KN; Gottschling, M; Gu, HF; Söhner, S; Price, AM; Marret, F; Pospelova, V; Smith, KF; Carbonell-Moore, C; Nézan, E; Bilien, G; Shin, HH				Li, Zhun; Mertens, Kenneth Neil; Gottschling, Marc; Gu, Haifeng; Soehner, Sylvia; Price, Andrea M.; Marret, Fabienne; Pospelova, Vera; Smith, Kirsty F.; Carbonell-Moore, Consuelo; Nezan, Elisabeth; Bilien, Gwenael; Shin, Hyeon Ho			Taxonomy and Molecular Phylogenetics of Ensiculiferaceae, fam. nov. (Peridiniales, Dinophyceae), with Consideration of their Life-history	PROTIST			English	Article						Dinoflagellate; molecular phylogenetics; parasite; plate overlap; rRNA; thecal plate	CYST-THECA RELATIONSHIP; PENTAPHARSODINIUM-TYRRHENICUM; SPINIFERA PERIDINIALES; DINOFLAGELLATE; THORACOSPHAERACEAE; MORPHOLOGY; PERIDINIOPSIDACEAE; CLASSIFICATION; CLARIFICATION; IDENTITY	In the current circumscription, the Thoracosphaeraceae comprise all dinophytes exhibiting calcified coccoid cells produced during their life-history. Species hitherto assigned to Ensiculifera and Pentapharsodinium are mostly based on the monadoid stage of life-history, while the link to the coccoid stage (occasionally treated taxonomically distinct) is not always resolved. We investigated the different life-history stages and DNA sequence data of Ensiculifera mexicana and other species occurring in samples collected from all over the world. Based on concatenated ribosomal RNA gene sequences Ensiculiferaceae represented a distinct peridinalean branch, which showed a distant relationship to other calcareous dinophytes. Both molecular and morphological data (particularly of the coccoid stage) revealed the presence of three distinct clades within Ensiculiferaceae, which may include other dinophytes exhibiting a parasitic life-history stage. At a higher taxonomic level, Ensiculiferaceae showed relationships to parasites and endosymbionts (i.e., Blastodinium and Zooxanthella) as well as to dinophytes harbouring diatoms instead of chloroplasts. These unexpected phylogenetic relationships are corroborated by the presence of five cingular plates in all such taxa, which differs from the six cingular plates of most other Thoracosphaeraceae. We herein describe Ensiculiferaceae, emend the descriptions of Ensiculifera and Pentapharsodinium, erect Matsuokaea and provide several new combinations at the species level.	[Li, Zhun] Korea Res Inst Biosci & Biotechnol, Biol Resource Ctr, 181 Ipsingil, Jeongeup 56212, South Korea; [Mertens, Kenneth Neil; Nezan, Elisabeth; Bilien, Gwenael] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Gottschling, Marc; Soehner, Sylvia] Ludwig Maximilians Univ Munchen, Dept Biol Systemat Bot & Mykol, GeoBioctr, Menzinger Str 67, D-80638 Munich, Germany; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Price, Andrea M.] Univ Haifa, Leon H Charney Sch Marine Sci, Dr Moses Strauss Dept Marine Geosci, 199 Abba Khoushy Ave, IL-3498838 Haifa, Israel; [Price, Andrea M.] Louisiana Univ Marine Consortium, 8124 Highway 56, Chauvin, LA 70344 USA; [Marret, Fabienne] Univ Liverpool, Sch Environm Sci, Liverpool L69 7ZT, Merseyside, England; [Pospelova, Vera] Univ Minnesota, Coll Sci & Engn, Dept Earth & Environm Sci, 116 Church St SE, Minneapolis, MN 55455 USA; [Pospelova, Vera] Univ Victoria, Sch Earth & Ocean Sci, OEASB A405, Victoria, BC V8P 5C2, Canada; [Smith, Kirsty F.] Cawthron Inst, Coastal & Freshwater Grp, Nelson 7042, New Zealand; [Carbonell-Moore, Consuelo] Oregon State Univ, Dept Bot & Plant Pathol, Coll Agr Sci, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Nezan, Elisabeth] Natl Museum Nat Hist, DGD REVE, Stn Biol Marine Concarneau, Pl Croix, F-29900 Concarneau, France; [Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea	Korea Research Institute of Bioscience & Biotechnology (KRIBB); Ifremer; University of Munich; Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; University of Haifa; University of Liverpool; University of Minnesota System; University of Minnesota Twin Cities; University of Victoria; Cawthron Institute; Oregon State University; Museum National d'Histoire Naturelle (MNHN); Korea Institute of Ocean Science & Technology (KIOST)	Mertens, KN (通讯作者)，IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France.; Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.	Kenneth.Mertens@ifremer.fr; shh961121@kiost.ac.kr	Mertens, Kenneth/AAO-9566-2020; Li, Zhun/IUQ-5309-2023; Mertens, Kenneth/C-3386-2015; Gu, Haifeng/ADN-4528-2022	Shin, Hyeon Ho/0000-0002-9711-6717; LI, ZHUN/0000-0001-8961-9966; Pospelova, Vera/0000-0003-4049-8133; Mertens, Kenneth/0000-0003-2005-9483; Marret-Davies, Fabienne/0000-0003-4244-0437; Gu, Haifeng/0000-0002-2350-9171	KRIBB Research Initiative Program; Marine Biotechnology Program - Ministry of Oceans and Fisheries of the Korean Government [20170431]; KIOST project [PE99821]; Regional Council of Brittany; General Council of Finistere; urban community of Concarneau Cornouaille Agglomeration; European Regional Development Fund (ERDF); Natural Sciences and Engineering Research Council of Canada (NSERC); Zuckerman STEM Leadership Program; Catalyst:seeding grant [CSG-CAW1601]	KRIBB Research Initiative Program; Marine Biotechnology Program - Ministry of Oceans and Fisheries of the Korean Government; KIOST project; Regional Council of Brittany(Region Bretagne); General Council of Finistere(Region Bretagne); urban community of Concarneau Cornouaille Agglomeration; European Regional Development Fund (ERDF)(European Union (EU)); Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)); Zuckerman STEM Leadership Program; Catalyst:seeding grant	This work was supported by the KRIBB Research Initiative Program, the Marine Biotechnology Program funded by the Ministry of Oceans and Fisheries of the Korean Government (20170431), and KIOST project (PE99821). The Regional Council of Brittany, the General Council of Finistere, the urban community of Concarneau Cornouaille Agglomeration and the European Regional Development Fund (ERDF) are acknowledged for funding the Sigma 300 FE-SEM at the Concarneau Marine Station. JSPS stipend for Sylvia Sohner. Partial funding for this research was provided by a Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery grant to VP. This work was supported in part by the Zuckerman STEM Leadership Program through a postdoctoral fellowship to AMP, and by a Catalyst:seeding grant (CSG-CAW1601) to KS and KNM.	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J	Harley, JR; Lanphier, K; Kennedy, E; Whitehead, C; Bidlack, A				Harley, John R. y; Lanphier, Kari; Kennedy, Esther; Whitehead, Chris; Bidlack, Allison			Random forest classification to determine environmental drivers and forecast paralytic shellfish toxins in Southeast Alaska with high temporal resolution	HARMFUL ALGAE			English	Article						HABs; Paralytic shellfish toxins; PSP; Alaska; Blue mussels; Machine learning	RECEPTOR-BINDING ASSAY; ALEXANDRIUM-CATENELLA; PUGET-SOUND; MARINE ECOSYSTEMS; DINOPHYCEAE; BLOOMS; TEMPERATURE; PATTERNS; CYSTS; THAU	Paralytic shellfish poison toxins (PSTs) produced by the dinoflagellate in the genus Alexandrium are a threat to human health and subsistence lifestyles in Southeast Alaska. It is important to understand the drivers of Alex-andrium blooms to inform shellfish management and aquaculture, as well as to predict trends of PST in a changing climate. In this study, we aggregate environmental data sets from multiple agencies and tribal partners to model and predict concentrations of PSTs in Southeast Alaska from 2016 to 2019. We used daily PST concentrations interpolated from regularly sampled blue mussels (Mytilus trossulus) analyzed for total PSTs using a receptor binding assay. We then created random forest models to classify shellfish above and below a threshold of toxicity (80 mu g 100 g(-1)) and used two methods to determine variable importance. We obtained a multivariate model with key variables being sea surface temperature, salinity, freshwater discharge, and air temperature. We then used a similar model trained using lagged environmental variables to hindcast out-of-sample (OOS) shellfish toxicities during April-October in 2017, 2018, and 2019. Hindcast OOS accuracies were low (37-50%); however, we found forecasting using environmental variables may be useful in predicting the timing of early summer blooms. This study reinforces the efficacy of machine learning to determine important drivers of harmful algal blooms, although more complex models incorporating other parameters such as toxicokinetics are likely needed for accurate regional forecasts.	[Harley, John R. y; Bidlack, Allison] Univ Alaska Southeast, Alaska Coastal Rainforest Ctr, 11066 Auke Lake Way, Juneau, AK 99801 USA; [Lanphier, Kari; Kennedy, Esther; Whitehead, Chris] Sitka Tribe Alaska, Environm Res Lab, 456 Katlian St, Sitka, AK 99835 USA	University of Alaska System; University of Alaska Southeastern	Harley, JR (通讯作者)，Univ Alaska Southeast, Alaska Coastal Rainforest Ctr, 11066 Auke Lake Way, Juneau, AK 99801 USA.	john.harley@alaska.edu	Kennedy, Esther/KPA-5766-2024	Harley, John/0000-0001-9244-1724	National Marine Fisheries Service Saltonstall-Kennedy Grant [NA17NMF4270238]; Central Council of Tlingit and Haida Indian Tribes of Alaska; Chilkoot Indian Association; Craig Tribal Association; Hoonah Indian Association; Hydaburg Cooperative Association; Ketchikan Indian Community; Klawock Cooperative Association; Kodiak Area Native Association; Metlakatla Indian Community; Organized Village of Kake; Organized Village of Kasaan; Petersburg Indian Association; Skagway Traditional Council; Sitka Tribe of Alaska; Sun'aq Tribe of Kodiak; Wrangell Cooperative Association; Yakutat Tlingit Tribe	National Marine Fisheries Service Saltonstall-Kennedy Grant; Central Council of Tlingit and Haida Indian Tribes of Alaska; Chilkoot Indian Association; Craig Tribal Association; Hoonah Indian Association; Hydaburg Cooperative Association; Ketchikan Indian Community; Klawock Cooperative Association; Kodiak Area Native Association; Metlakatla Indian Community; Organized Village of Kake; Organized Village of Kasaan; Petersburg Indian Association; Skagway Traditional Council; Sitka Tribe of Alaska; Sun'aq Tribe of Kodiak; Wrangell Cooperative Association; Yakutat Tlingit Tribe	Funding for this work was provided by a National Marine Fisheries Service Saltonstall-Kennedy Grant (Award NA17NMF4270238). We would also like to thank the tribal partners of the SEATOR network for their assistance and support including Central Council of Tlingit and Haida Indian Tribes of Alaska, Chilkoot Indian Association, Craig Tribal Association, Hoonah Indian Association, Hydaburg Cooperative Association, Ketchikan Indian Community, Klawock Cooperative Association, Kodiak Area Native Association, Metlakatla Indian Community, Organized Village of Kake, Organized Village of Kasaan, Petersburg Indian Association, Skagway Traditional Council, Sitka Tribe of Alaska, Sun'aq Tribe of Kodiak, Wrangell Cooperative Association, and Yakutat Tlingit Tribe.	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J	Kim, YO; Choi, J; Baek, SH; Lee, M; Oh, HM				Kim, Young Ok; Choi, Jungmin; Baek, Seung Ho; Lee, Minji; Oh, Hee-Mock			Tracking <i>Alexandrium catenella</i> from seed-bed to bloom on the southern coast of Korea	HARMFUL ALGAE			English	Article						Alexandrium; Cyst germination; Encystment; Mass transformation; Harmful algal bloom	DINOFLAGELLATE GONYAULAX-TAMARENSIS; CYST GERMINATION; RIVER PLUME; MASAN BAY; FUNDYENSE; DYNAMICS; GULF; POPULATION; DORMANCY; DINOPHYCEAE	Alexandrium catenella was tracked from seed-bed to bloom at a hot spot of cyst deposition on the southern coast of Korea from June 2016 to Feb. 2020. Changes in cyst abundance and germinability from sediment, as well as the vegetative cell abundance and encystment in the water column were intensively monitored. Cyst germination of ca. 73% occurred synchronously in November of 2016 to 2019, when bottom water temperature was around 15 degrees C. After mass germination, vegetative cells formed a seed populations at low density (<10 cells L-1) during winter. Overwintering populations initiated growth in March and then proliferated into high density (ca. 4 x 104 cells L-1) spring blooms in mid-April 2017 when moderate temperature (15 degrees C) was recorded. There was no bloom in spring of 2018 and 2019, but small vegetative populations developed. Decline of the spring bloom was followed by massive encystment and an increase in Noctiluca abundance. An average spring encystment ratio of 0.002 was estimated for the study years. Newly formed cysts lay dormant during the warm season lasting about six months and then seeded the next population of vegetative cells. An average contribution ratio of cells recruited from the sediment was ca. 0.09 for seeding winter populations. The range in shift ratios for spring production of a daughter cyst population to prior cyst abundance of the mother population in fall was 0.1 to 0.6 for consecutive years, depending on annual variation of local environments. Tracking mass transformation of A. catenella cysts will contribute to more effective science based management of paralytic shellfish poisoning on the southern Korean coast.	[Kim, Young Ok; Choi, Jungmin] Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan 49111, South Korea; [Baek, Seung Ho; Lee, Minji] Korea Inst Ocean Sci & Technol, Risk Assessment Res Ctr, Geoje 53201, South Korea; [Oh, Hee-Mock] Korea Res Inst Biosci & Biotechnol, Cell Factory Res Ctr, Daejeon 34141, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST); Korea Research Institute of Bioscience & Biotechnology (KRIBB)	Kim, YO (通讯作者)，Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Ctr, Busan 49111, South Korea.	yokim@kiost.ac.kr	KIM, YOUNG JIN/E-9374-2011	Lee, Minji/0000-0001-6834-6874; Choi, Jung Min/0000-0003-4902-8453; BAEK, SEUNG HO/0000-0002-5402-2518	Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning [NRF-2016M1A5A1027456]	Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning(National Research Foundation of KoreaMinistry of Science, ICT & Future Planning, Republic of Korea)	We are very grateful to Dr. D. Wayne Coats for his constructive suggestion and comments to the manuscript. Careful reviews by three anonymous reviewers provided very thorough and helpful reviews of the manuscript. We thank to the captain, Mr. Y.H. Kim, of fishing boat, Kumkangho. This work was supported by the Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) funded by the Ministry of Science, ICT & Future Planning (grant number NRF-2016M1A5A1027456).	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J	Li, YZ; Stumpf, RP; MCGillicuddy, DJ; He, RY				Li, Yizhen; Stumpf, Richard P.; McGillicuddy, D. J., Jr.; He, Ruoying			Dynamics of an intense <i>Alexandrium catenella</i> red tide in the Gulf of Maine: satellite observations and numerical modeling	HARMFUL ALGAE			English	Article						Red water; Bloom patches; Cell accumulation; Coastal upwelling; Upward swimming	DINOFLAGELLATE GONYAULAX-TAMARENSIS; HARMFUL ALGAL BLOOMS; PHYTOPLANKTON BLOOMS; CYST FORMATION; FUNDYENSE POPULATIONS; VERTICAL MIGRATION; WESTERN GULF; ACCUMULATION; TRANSPORT; SURFACE	In July 2009, an unusually intense bloom of the toxic dinoflagellate Alexandrium catenella occurred in the Gulf of Maine. The bloom reached high concentrations (from hundreds of thousands to one million cells L-1) that discolored the water and exceeded normal bloom concentrations by a factor of 1000. Using Medium Resolution Imaging Spectrometer (MERIS) imagery processed to target chlorophyll concentrations (>2 mu g L-1), patches of intense A. catenella concentration were identified that were consistent with the highly localized cell concentrations observed from ship surveys. The bloom patches were generally aligned with the edge of coastal waters with high-absorption. Dense bloom patches moved onshore in response to a downwelling event, persisted for approximately one week, then dispersed rapidly over a few days and did not reappear. Coupled physical-biological model simulations showed that wind forcing was an important factor in transporting cells onshore. Upward swimming behavior facilitated the horizontal cell aggregation, increasing the simulated maximum depth-integrated cell concentration by up to a factor of 40. Vertical convergence of cells, due to active swimming of A. catenella from the subsurface to the top layer, could explain the additional 25-fold intensification (25 x 40=1000-fold) needed to reach the bloom concentrations that discolored the water. A model simulation that considered upward swimming overestimated cell concentrations downstream of the intense aggregation. This discrepancy between model and observed concentrations suggested a loss of cells from the water column at a time that corresponded to the start of encystment. These results indicated that the joint effect of upward swimming, horizontal convergence, and wind-driven flow contributed to the red water event, which might have promoted the sexual reproduction event that preceded the encystment process.	[Li, Yizhen] CSS Inc, NOAA Natl Ctr Coastal Ocean Sci, 1315 East West Highway, Silver Spring, MD 20910 USA; [Stumpf, Richard P.] NOAA Natl Ctr Coastal Ocean Sci, 1315 East West Highway, Silver Spring, MD 20910 USA; [McGillicuddy, D. J., Jr.] Woods Hole Oceanog Inst, Dept Appl Ocean Phys & Engn, Woods Hole, MA 02543 USA; [He, Ruoying] North Carolina State Univ, Dept Marine Earth & Atmospher Sci, Raleigh, NC 27695 USA	National Oceanic Atmospheric Admin (NOAA) - USA; National Oceanic Atmospheric Admin (NOAA) - USA; Woods Hole Oceanographic Institution; North Carolina State University	Li, YZ (通讯作者)，CSS Inc, NOAA Natl Ctr Coastal Ocean Sci, 1315 East West Highway, Silver Spring, MD 20910 USA.	Yizhen.Li@noaa.gov	Stumpf, Richard/L-5237-2019; He, Ruoying/C-5598-2015	He, Ruoying/0000-0001-6158-2292	Postdoctoral Scholarship Program at Woods Hole Oceanographic Institution; Dr. George D. Grice Postdoctoral Scholarship; NOAA NCCOS HAB Forecast project; Woods Hole Center for Oceans and Human Health - National Science Foundation [OCE-1314642, OCE-1840381]; National Institute of Environmental Health Sciences [P01ES021923-01, P01 ES028938-01]; NOAA [NA15NOS4780196, NA16NOS0120028]	Postdoctoral Scholarship Program at Woods Hole Oceanographic Institution; Dr. George D. Grice Postdoctoral Scholarship; NOAA NCCOS HAB Forecast project; Woods Hole Center for Oceans and Human Health - National Science Foundation; National Institute of Environmental Health Sciences(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Environmental Health Sciences (NIEHS)); NOAA(National Oceanic Atmospheric Admin (NOAA) - USA)	We are grateful to NASA GFSC and the European Space Agency for making the Level 1 MERIS and MODIS data available. YL's time at WHOI was supported by the Postdoctoral Scholarship Program at Woods Hole Oceanographic Institution, with funding provided by the Dr. George D. Grice Postdoctoral Scholarship. YL's NOAA time is supported by NOAA NCCOS HAB Forecast project. YL and RPS thank Andrew Meredith for help processing satellite imagery. YL are also grateful to Timothy Wynne, Danielle Dupuy, and Michelle Tomlinson for the useful inputs during NOAA internal reviews. DJM gratefully acknowledges support of the Woods Hole Center for Oceans and Human Health, funded jointly by the National Science Foundation (OCE-1314642 and OCE-1840381) the National Institute of Environmental Health Sciences (P01ES021923-01 and P01 ES028938-01). RH acknowledges support made possible by NOAA grant NA15NOS4780196 and NA16NOS0120028. We are indebted to Editor Raphael Kudela and three anonymous reviewers for providing insightful comments that greatly improved the quality of the manuscript.	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J	Deng, YY; Hu, ZX; Shang, LX; Chai, ZY; Tang, YZ				Deng, Yunyan; Hu, Zhangxi; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong			Transcriptional Responses of the Heat Shock Protein 20 (Hsp20) and 40 (Hsp40) Genes to Temperature Stress and Alteration of Life Cycle Stages in the Harmful Alga <i>Scrippsiella trochoidea</i> (Dinophyceae)	BIOLOGY-BASEL			English	Article						Scrippsiella trochoidea; resting cyst; dinoflagellate; harmful algal blooms; heat shock protein 20 (Hsp20); heat shock protein 40 (Hsp40); temperature stress	J-DOMAIN PROTEIN; MOLECULAR CHAPERONES; PROTEOMIC ANALYSIS; ESCHERICHIA-COLI; HSP70 EXPRESSION; BALLAST WATER; DINOFLAGELLATE; GROWTH; EVOLUTIONARY; DORMANCY	The small heat shock protein (sHsp) and Hsp40 are Hsp members that have not been intensively investigated but are functionally important in most organisms. In this study, the potential roles of a Hsp20 (StHsp20) and a Hsp40 (StHsp40) in dinoflagellates during adaptation to temperature fluctuation and alteration of different life stages were explored using the representative harmful algal blooms (HABs)-causative dinoflagellate species, Scrippsiella trochoidea. We isolated the full-length cDNAs of the two genes via rapid amplification of cDNA ends (RACE) and tracked their differential transcriptions via real-time qPCR. The results revealed StHsp20 and StHsp40 exhibited mRNA accumulation patterns that were highly similar in response to heat stress but completely different toward cold stress, which implies that the mechanisms underlying thermal and cold acclimation in dinoflagellates are regulated by different sets of genes. The StHsp20 was probably related to the heat tolerance of the species, and StHsp40 was closely involved in the adaptation to both higher and lower temperature fluctuations. Furthermore, significantly higher mRNA abundance of StHsp40 was detected in newly formed resting cysts, which might be a response to intrinsic stress stemmed from encystment. This finding also implied StHsp40 might be engaged in resting cyst formation of S. trochoidea. Our findings enriched the knowledge about possible cross-talk of different Hsp members in dinoflagellates and provided clues to further explore the molecular underpinnings underlying resting cyst production and broad temperature tolerance of this group of HABs contributors.	[Deng, Yunyan; Hu, Zhangxi; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Shang, Lixia; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	yunyandeng@qdio.ac.cn; zhu@qdio.ac.cn; lxshang@qdio.ac.cn; zhaoyangchai@qdio.ac.cn; yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Chai, Zhaoyang/F-7485-2017	Deng, Yunyan/0000-0001-5967-3611; Hu, Zhangxi/0000-0002-4742-4973; Tang, Ying-Zhong/0000-0003-0446-3128	Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]; National Science Foundation of China [41606126, 61533011, 41776125]	Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC))	This research was funded by the Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences (Grant No. COMS2019Q09) and the National Science Foundation of China (Grant Numbers 41606126, 61533011, and 41776125).	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J	Matantseva, O; Berdieva, M; Kalinina, V; Pozdnyakov, I; Pechkovskaya, S; Skarlato, S				Matantseva, Olga; Berdieva, Mariia; Kalinina, Vera; Pozdnyakov, Ilya; Pechkovskaya, Sofia; Skarlato, Sergei			Stressor-induced ecdysis and thecate cyst formation in the armoured dinoflagellates <i>Prorocentrum cordatum</i>	SCIENTIFIC REPORTS			English	Article								Ecdysis, the process of extensive cell covering rearrangement, represents a remarkable physiological trait of dinoflagellates. It is involved in the regulation of the population and bloom dynamics of these microorganisms, since it is required for the formation of their thin-walled cysts. This study presents laboratory data on ecdysis in Prorocentrum cordatum, a harmful dinoflagellate species of high environmental significance. We studied external stressors triggering this process and changes in the cell ultrastructure accompanying it. Our experiments showed that mass ecdysis and formation of cysts in P. cordatum could be induced by centrifugation, temperature decrease, changes in salinity, and treatment by 2,6-dichlorobenzonitrile, whereas temperature increase, changes in pH and treatment by tetracycline did not have this effect. Obtained cysts of P. cordatum did not contain the pellicular layer and were formed in the end of the first stage of this process, i.e. removal of the plasma membrane and the outer amphiesmal vesicle membrane, whereas its second stage, removal of theca, represented excystment. Based on our findings, we conclude that such cysts can be attributed to thecate cysts and suggest P. cordatum as a promising model organism for the investigation of cellular and molecular aspects of ecdysis in dinoflagellates.	[Matantseva, Olga; Berdieva, Mariia; Kalinina, Vera; Pozdnyakov, Ilya; Pechkovskaya, Sofia; Skarlato, Sergei] Russian Acad Sci, Inst Cytol, Lab Cytol Unicellular Organisms, St Petersburg, Russia	Russian Academy of Sciences; St. Petersburg Scientific Centre of the Russian Academy of Sciences; Institute of Cytology RAS	Matantseva, O (通讯作者)，Russian Acad Sci, Inst Cytol, Lab Cytol Unicellular Organisms, St Petersburg, Russia.	matantseva@incras.ru	Matantseva, Olga/AAE-9918-2021; Pechkovskaya, Sofia/AAF-1131-2021; Skarlato, Sergei/W-4663-2017; Berdieva, Mariia/V-6811-2018; Kalinina, Vera/V-2408-2018	Pechkovskaya, Sofia/0000-0002-3936-9716; Skarlato, Sergei/0000-0001-7579-7227; Berdieva, Mariia/0000-0002-5467-2713; Kalinina, Vera/0000-0003-2053-5101; Matantseva, Olga/0000-0001-9107-8150	Russian Science Foundation [18-74-10093]; Institute of Cytology RAS [0124-2019-0005]; Russian Science Foundation [18-74-10093] Funding Source: Russian Science Foundation	Russian Science Foundation(Russian Science Foundation (RSF)); Institute of Cytology RAS(Russian Academy of Sciences); Russian Science Foundation(Russian Science Foundation (RSF))	This work was supported by the Russian Science Foundation, grant #18-74-10093. Use of the electron microscope was financed by the Budgetary Program #0124-2019-0005 at the Institute of Cytology RAS.	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J	Liu, Y; Chen, TT; Wang, XT; Song, SQ; Li, CW				Liu, Yun; Chen, Tiantian; Wang, Xiaoting; Song, Shuqun; Li, Caiwen			Variation in the photosynthetic activities of the dinoflagellate<i>Akashiwo sanguinea</i>during formation of resting cysts	MARINE BIOLOGY			English	Article							AKASHIWO-SANGUINEA; GENE-EXPRESSION; BIOCHEMICAL-COMPOSITION; NITROGEN LIMITATION; HARMFUL; BLOOM; DINOPHYCEAE; ENCYSTMENT; APPARATUS; NITRATE	Resting cysts represent the dormant life stage produced by sexual reproduction of dinoflagellates; it generally maintain a limited level of metabolic activities. In the present study, changes in the photosynthetic apparatus ofAkashiwo sanguineaduring the encystment process in different nitrogen (N) conditions were characterized, and the transcriptional responses of nine photosynthesis genes were further evaluated. The photochemical efficiency decreased with elevation of N deprivation and growth of algae, and the resting cysts maintained limited photosynthetic activity. Meanwhile, the transcription of photosystem II genes (psbAandpsbD) were down-regulated, especially the levels of thepsbAgene, suggesting the inactivation of photosystem II under N limitation. Moreover, genes involved in cytochrome f (petA) and ATP synthase (atpA,atpB) were also transcribed at low levels in N-deprivation cultures. In contrast, the transcription of the RubisCO large subunit gene (rbcL) was up-regulated, indicating the maintenance of carbon fixation in N-limited conditions. The transcription levels of photosystem I genes (psaAandpsaB) showed no significant correlation with the N condition. Further, most of the photosynthesis genes were down-regulated in the resting cysts, which was coincided with the inactive physiological status of the dormant stage. The results demonstrated that photosynthesis genes are differentially regulated in response to varying N conditions and life cycles. The findings will provide fundamental knowledge for better understanding the physiological characteristics and molecular regulation mechanisms in the developmental life cycle of marine dinoflagellates.	[Liu, Yun; Chen, Tiantian; Song, Shuqun; Li, Caiwen] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Liu, Yun; Chen, Tiantian; Song, Shuqun; Li, Caiwen] Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Liu, Yun; Chen, Tiantian; Song, Shuqun; Li, Caiwen] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Wang, Xiaoting] Ocean Univ China, Coll Life Sci, Qingdao 266003, Peoples R China; [Li, Caiwen] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Ocean University of China; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Li, CW (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Li, CW (通讯作者)，Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Li, CW (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China.; Li, CW (通讯作者)，Univ Chinese Acad Sci, Beijing 100049, Peoples R China.	cwli@qdio.ac.cn	Liu, Yun/Q-1757-2019; Chen, Tiantian/KFR-4471-2024	Li, Caiwen/0000-0003-3974-2522	Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) [2018SDKJ0504-2]; Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao) [LMEES-YTSP-2018-01-06]; National Natural Science Foundation of China (NSFC) [41976136]	Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao); Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao); National Natural Science Foundation of China (NSFC)(National Natural Science Foundation of China (NSFC))	The authors would like to thank Dr. Litao Zhang and Dr. Hu Li for their assistance in the chlorophyll fluorescence analysis. This work was financially supported by the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) (no. 2018SDKJ0504-2), the Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao) (no. LMEES-YTSP-2018-01-06), and the National Natural Science Foundation of China (NSFC, Grant no. 41976136). 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Biol.	OCT 6	2020	167	11							158	10.1007/s00227-020-03774-y	http://dx.doi.org/10.1007/s00227-020-03774-y			12	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	OB4ZF					2025-03-11	WOS:000578479100002
J	Kolling, HM; Stein, R; Fahl, K; Sadatzki, H; de Vernal, A; Xiao, XT				Kolling, Henriette M.; Stein, Ruediger; Fahl, Kirsten; Sadatzki, Henrik; de Vernal, Anne; Xiao, Xiaotong			Biomarker Distributions in (Sub)-Arctic Surface Sediments and Their Potential for Sea Ice Reconstructions	GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS			English	Article						biomarker; IP25; PIP25; sea ice; Baffin Bay; Fram Strait	EAST GREENLAND CURRENT; DINOFLAGELLATE CYST ASSEMBLAGES; HIGHLY BRANCHED ISOPRENOIDS; ATLANTIC WATER ADVECTION; NORTHERN NORTH-ATLANTIC; ARCTIC-OCEAN; FRAM STRAIT; ORGANIC-CARBON; NORDIC SEAS; LAPTEV SEA	To evaluate the present sea ice changes in a longer-term perspective, the knowledge of sea ice variability on preindustrial and geological time scales is essential. For the interpretation of proxy reconstructions it is necessary to understand the recent signals of different sea ice proxies from various regions. We present 260 new sediment surface samples collected in the (sub-)Arctic Oceans that were analyzed for specific sea ice (IP25) and open-water phytoplankton biomarkers (brassicasterol, dinosterol, and highly branched isoprenoid [HBI] III). This new biomarker data set was combined with 615 previously published biomarker surface samples into a pan-Arctic database. The resulting pan-Arctic biomarker and sea ice index (PIP25) database shows a spatial distribution correlating well with the diverse modern sea ice concentrations. We find correlations of PBIP25, PDIP25, and PIIIIP25 with spring and autumn sea ice concentrations. Similar correlations with modern sea ice concentrations are observed in Baffin Bay. However, the correlations of the PIP25 indices with modern sea ice concentrations differ in Fram Strait from those of the (sub-)Arctic data set, which is likely caused by region-specific differences in sea ice variability, nutrient availability, and other environmental conditions. The extended (sea ice) biomarker database strengthens the validity of biomarker sea ice reconstructions in different Arctic regions and shows how different sea ice proxies combined may resolve specific seasonal sea ice conditions.	[Kolling, Henriette M.; Stein, Ruediger; Fahl, Kirsten] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Bremerhaven, Germany; [Kolling, Henriette M.] Christian Albrechts Univ Kiel, Inst Geosci, Kiel, Germany; [Stein, Ruediger] Univ Bremen, MARUM Ctr Marine Environm Sci, Bremen, Germany; [Stein, Ruediger] Univ Bremen, Fac Geosci, Bremen, Germany; [Sadatzki, Henrik] Univ Bergen, Dept Earth Sci, Bergen, Norway; [Sadatzki, Henrik] Univ Bergen, Bjerknes Ctr Climate Res, Bergen, Norway; [Sadatzki, Henrik] Australian Natl Univ, Res Sch Earth Sci, Canberra, ACT, Australia; [de Vernal, Anne] Univ Quebec Montreal, Ctr Rech Geochem & Geodynam Geotop, Montreal, PQ, Canada; [Xiao, Xiaotong] Ocean Univ China, Inst Marine Organ Geochem, Qingdao, Peoples R China	Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; University of Kiel; University of Bremen; University of Bremen; University of Bergen; Bjerknes Centre for Climate Research; University of Bergen; Australian National University; University of Quebec; University of Quebec Montreal; Ocean University of China	Kolling, HM (通讯作者)，Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Bremerhaven, Germany.; Kolling, HM (通讯作者)，Christian Albrechts Univ Kiel, Inst Geosci, Kiel, Germany.	henriette.kolling@ifg.uni-kiel.de	; de Vernal, Anne/D-5602-2013	Stein, Ruediger/0000-0002-4453-9564; Kolling, Henriette Marie/0000-0003-4198-941X; Fahl, Dr., Kirsten/0000-0001-9317-4656; Sadatzki, Henrik/0000-0002-1270-6807; de Vernal, Anne/0000-0001-5656-724X	Deutsche Forschungsgemeinschaft (DFG) through "ArcTrain" [GRK 1904]; European Research Council under European Union [610055]	Deutsche Forschungsgemeinschaft (DFG) through "ArcTrain"(German Research Foundation (DFG)); European Research Council under European Union(European Research Council (ERC))	This study was funded by the Deutsche Forschungsgemeinschaft (DFG) through "ArcTrain" (GRK 1904). The research of H. S. leading to these results has received funding from the European Research Council under European Union's Seventh Framework Programme (FP7/2007-2013)/ERC Grant Agreement 610055 as part of the Ice2Ice project. The sediments used in this study were collected during several cruises, and we wish to thank the captains and crews as well as the scientific parties and especially Diana Krawczyk for providing samples. H. S. is grateful to Dag Inge Blindheim for assistance with multicore sampling. We thank Walter Luttmer for laboratory support and Mischa Ungermann for helping with NSIDC sea ice data. Thanks to Simon T. Belt and colleagues (Biogeochemistry Research Centre, University of Plymouth) for providing the internal standard for IP<INF>25</INF> analysis.	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Geophys. Geosyst.	OCT	2020	21	10							e2019GC008629	10.1029/2019GC008629	http://dx.doi.org/10.1029/2019GC008629			28	Geochemistry & Geophysics	Science Citation Index Expanded (SCI-EXPANDED)	Geochemistry & Geophysics	OP8PB		Green Published, hybrid			2025-03-11	WOS:000588351500007
J	Xue, WW; Hu, XM; Ma, AL; Garzanti, E; Li, J				Xue, Weiwei; Hu, Xiumian; Ma, Anlin; Garzanti, Eduardo; Li, Juan			Eustatic and tectonic control on the evolution of the Jurassic North Qiangtang Basin, northern Tibet, China: Impact on the petroleum system	MARINE AND PETROLEUM GEOLOGY			English	Article						Qiangtang basin; Sedimentary evolution; Lithofacies; Transgressive-regressive cycles; Provenance; Source-reservoir-seal system	ZIRCON U-PB; SONGPAN-GANZI COMPLEX; MARINE SOURCE ROCKS; HF ISOTOPES; DINOFLAGELLATE CYSTS; PROVENANCE ANALYSIS; METAMORPHIC BELT; LHASA-QIANGTANG; TRACE-ELEMENTS; SEDIMENTARY	The Qiangtang Basin is the largest Mesozoic marine hydrocarbon-bearing basin in China. Investigating its tectonic and sedimentary evolution is therefore relevant for hydrocarbon exploration. Here we present a detailed stratigraphic and sedimentological analysis of five Jurassic stratigraphic sections in the North Qiangtang Basin. Nineteen facies associations were identified and allowed us to reconstruct changes of water-depth. The North Qiangtang Basin experienced two transgressive-regressive cycles during the Jurassic. The first cycle started in the mid-Jurassic (Bajocian-Bathonian), with braided-river and floodplain sediments passing up-section to tidal flat and eventually inner-to mid-ramp deposits. Tidal-flat deposition resumed during the Callovian. The second cycle began in the Late Jurassic (Oxfordian) with transgressive inner-to mid-ramp sediments followed by a shallowingupward trend during the late Oxfordian, leading again to tidal-flat sedimentation in the Kimmeridgian-Tithonian. Petrographic analysis and detrital-zircon geochronology indicate provenance constantly from the Hoh Xil-Songpan Ganzi terrane, Kunlun arc, and central Qiangtang. Because Jurassic magmatic activity and active syn-depositional faults have not been reported, and steady detrital supply indicates a stable tectonic environment, eustatic change is inferred to represent the principal control on sedimentary evolution in the North Qiangtang Basin during the Jurassic. A comparison with the Amu Darya Basin in central Asia, characterized by similar sedimentological conditions and distribution of reservoir and source rocks, emphasizes the importance of eustatic control for the development of the source-reservoir-seal system of the North Qiangtang Basin.	[Xue, Weiwei; Hu, Xiumian; Ma, Anlin; Li, Juan] Nanjing Univ, Sch Earth Sci & Engn, State Key Lab Mineral Deposits Res, Nanjing, Jiangsu, Peoples R China; [Garzanti, Eduardo] Univ Milano Bicocca, Dept Earth & Environm Sci, Lab Provenance Studies, I-20126 Milan, Italy	Nanjing University; University of Milano-Bicocca	Hu, XM (通讯作者)，Nanjing Univ, Sch Earth Sci & Engn, State Key Lab Mineral Deposits Res, Nanjing, Jiangsu, Peoples R China.	huxm@nju.edu.cn	Hu, Xiumian/A-8785-2011; Xue, Weiwei/C-7461-2016	Li, Juan/0000-0002-5211-9930	Project of Basic Science Center [41888101]; International Exchanges Scheme by the National Natural Science Foundation of China [41761130076]	Project of Basic Science Center; International Exchanges Scheme by the National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work benefited from discussions with Jiangang Wang, Yiwei Xu, and Shijie Zhang. We thank Yiwei Xu for assistance in the field. This manuscript benefited from comments and suggestions by Franz T. Fursich, Xiugen Fu and associate editor Domenico Chiarella. This work was financially supported by the Project of Basic Science Center [41888101] and the International Exchanges Scheme [41761130076] by the National Natural Science Foundation of China.	Allen A.P., 2013, BASIN ANAL PRINCIPLE, V3nd, P326; Andersen T, 2002, CHEM GEOL, V192, P59, DOI 10.1016/S0009-2541(02)00195-X; ASSERETO RLAM, 1977, SEDIMENTOLOGY, V24, P153, DOI 10.1111/j.1365-3091.1977.tb00254.x; Bai S., 1989, GEOL REV, V35, P529; Brookfield ME, 2001, EARTH-SCI REV, V55, P41, DOI 10.1016/S0012-8252(01)00036-8; Brunet M. F., 2017, SPECIAL PUBLICATIONS, V427, P357; Brunet M.F., 2017, Geological Society, London, Special Publications, V427, P89, DOI [DOI 10.1144/SP427.18, 10.1144/SP427.18]; Chen L, 2019, NEWSL STRATIGR, V52, P55, DOI 10.1127/nos/2018/0464; Chen Lan, 2005, Journal of Chengdu University of Technology, V32, P466; Chen Wenxi, 2009, Chin. 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J	Mertens, KN; Adachi, M; Anderson, DM; Band-Schmidt, CJ; Bravo, I; Brosnahan, ML; Bolch, CJS; Calado, AJ; Carbonell-Moore, MC; Chomérat, N; Elbrächter, M; Figueroa, RI; Fraga, S; Gárate-Lizárraga, I; Garcés, E; Gu, HF; Hallegraeff, G; Hess, P; Hoppenrath, M; Horiguchi, T; Iwataki, M; John, U; Kremp, A; Larsen, J; Leaw, CP; Li, Z; Lim, PT; Litaker, W; MacKenzie, L; Masseret, E; Matsuoka, K; Moestrup, O; Montresor, M; Nagai, S; Nézan, E; Nishimura, T; Okolodkov, YB; Orlova, TY; Reñé, A; Sampedro, N; Satta, CT; Shin, HH; Siano, R; Smith, KF; Steidinger, K; Takano, Y; Tillmann, U; Wolny, J; Yamaguchi, A; Murray, S				Mertens, Kenneth Neil; Adachi, Masao; Anderson, Donald M.; Band-Schmidt, Christine J.; Bravo, Isabel; Brosnahan, Michael L.; Bolch, Christopher J. S.; Calado, Antonio J.; Carbonell-Moore, M. Consuelo; Chomerat, Nicolas; Elbrachter, Malte; Figueroa, Rosa Isabel; Fraga, Santiago; Garate-Lizarraga, Ismael; Garces, Esther; Gu, Haifeng; Hallegraeff, Gustaaf; Hess, Philipp; Hoppenrath, Mona; Horiguchi, Takeo; Iwataki, Mitsunori; John, Uwe; Kremp, Anke; Larsen, Jacob; Leaw, Chui Pin; Li, Zhun; Lim, Po Teen; Litaker, Wayne; MacKenzie, Lincoln; Masseret, Estelle; Matsuoka, Kazumi; Moestrup, Ojvind; Montresor, Marina; Nagai, Satoshi; Nezan, Elisabeth; Nishimura, Tomohiro; Okolodkov, Yuri B.; Orlova, Tatiana Yu; Rene, Albert; Sampedro, Nagore; Satta, Cecilia Teodora; Shin, Hyeon Ho; Siano, Raffaele; Smith, Kirsty F.; Steidinger, Karen; Takano, Yoshihito; Tillmann, Urban; Wolny, Jennifer; Yamaguchi, Aika; Murray, Shauna			Morphological and phylogenetic data do not support the split of <i>Alexandrium</i> into four genera	HARMFUL ALGAE			English	Article						Taxonomy; Phylogenetics; Paraphyletic; Saxitoxin; Spirolides; Harmful algal blooms	SP-NOV DINOPHYCEAE; SETO INLAND SEA; GENUS ALEXANDRIUM; OSTENFELDII DINOPHYCEAE; LABORATORY CONDITIONS; PYRODINIUM-BAHAMENSE; MOLECULAR PHYLOGENY; RESTING CYSTS; DINOFLAGELLATE; TAMARENSIS	A recently published study analyzed the phylogenetic relationship between the genera Centrodinium and Alexandrium, confirming an earlier publication showing the genus Alexandrium as paraphyletic. This most recent manuscript retained the genus Alexandrium, introduced a new genus Episemicolon, resurrected two genera, Gessnerium and Protogonyaulax, and stated that: "The polyphyly [sic] of Alexandrium is solved with the split into four genera". However, these reintroduced taxa were not based on monophyletic groups. Therefore this work, if accepted, would result in replacing a single paraphyletic taxon with several non-monophyletic ones. The morphological data presented for genus characterization also do not convincingly support taxa delimitations. The combination of weak molecular phylogenetics and the lack of diagnostic traits (i.e., autapomorphies) render the applicability of the concept of limited use. The proposal to split the genus Alexandrium on the basis of our current knowledge is rejected herein. The aim here is not to present an alternative analysis and revision, but to maintain Alexandrium. A better constructed and more phylogenetically accurate revision can and should wait until more complete evidence becomes available and there is a strong reason to revise the genus Alexandrium. The reasons are explained in detail by a review of the available molecular and morphological data for species of the genera Alexandrium and Centrodinium. In addition, cyst morphology and chemotaxonomy are discussed, and the need for integrative taxonomy is highlighted.	[Mertens, Kenneth Neil; Chomerat, Nicolas; Nezan, Elisabeth] IFREMER, Stn Biol Marine, LER BO, Pl Croix,BP40537, F-29185 Concarneau, France; [Adachi, Masao] Kochi Univ, Fac Agr & Marine Sci, Lab Aquat Environm Sci LAQUES, 200 Otsu, Nankoku, Kochi 7838502, Japan; [Anderson, Donald M.; Brosnahan, Michael L.] Woods Hole Oceanog Inst, Woods Hole, MA 02543 USA; [Band-Schmidt, Christine J.] Inst Politecn Nacl, Ctr Interdisciplinario Ciencias Marinas IPN CICIM, Dept Plancton & Ecol Marina, La Paz 23096, Bcs, Mexico; [Bravo, Isabel; Figueroa, Rosa Isabel] Inst Espanol Oceanog IEO, Subida Radio Faro 50, Vigo 36390, Spain; [Bolch, Christopher J. S.] Univ Tasmania, Inst Marine & Antarctic Studies, Locked Bag 1370, Launceston, Tas 7250, Australia; [Calado, Antonio J.] Univ Aveiro, Dept Biol, P-3810193 Aveiro, Portugal; [Calado, Antonio J.] Univ Aveiro, GeoBioTec Res Unit, P-3810193 Aveiro, Portugal; [Carbonell-Moore, M. Consuelo] Oregon State Univ, Coll Agr Sci, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA; [Elbrachter, Malte] Helmholtz Zentrum Polar & Meeresforsch Sylt, Alfred Wegener Inst, Hafenstr 43, D-25992 List Auf Sylt, Germany; [Fraga, Santiago] Praza Mestra Manuela 1, Nigran 36340, Spain; [Garate-Lizarraga, Ismael] Inst Politecn Nacl, Ctr Interdisciplinario Ciencias Marinas, Apartado Postal 592, La Paz 23000, Bcs, Mexico; [Garces, Esther; Rene, Albert; Sampedro, Nagore] CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Pg Maritim Barceloneta 37-49, Barcelona 08003, Spain; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Hallegraeff, Gustaaf] Univ Tasmania, Inst Marine & Antarctic Studies, Private Bag 129, Hobart, Tas 7001, Australia; [Hess, Philipp] IFREMER, DYNECO, Lab Phycotoxines, Rue Ile Yeu, F-44311 Nantes, France; [Hoppenrath, Mona] German Ctr Marine Biodivers Res, Wilhelmshaven, Germany; [Horiguchi, Takeo; Yamaguchi, Aika] Hokkaido Univ, Fac Sci, Dept Biol Sci, North 10,West 8, Sapporo, Hokkaido 0600810, Japan; [Iwataki, Mitsunori] Univ Tokyo, Asian Nat Environm Sci Ctr, Bunkyo Ku, Tokyo 1138657, Japan; [John, Uwe; Tillmann, Urban] Helmholtz Zentrum Polar & Meeresforsch, Alfred Wegener Inst, Bremerhaven, Germany; [Kremp, Anke] Leibniz Inst Ostseeforsch Warnemunde, Seestr 15, D-18119 Rostock, Germany; [Larsen, Jacob; Moestrup, Ojvind] Univ Copenhagen, Dept Biol, Marine Biol Sect, Univ Pk 4, DK-2100 Copenhagen O, Denmark; [Leaw, Chui Pin; Lim, Po Teen] Univ Malaya, Inst Ocean & Earth Sci, Bachok Marine Res Stn, Bachok 16310, Kelantan, Malaysia; [Li, Zhun] Korea Res Inst Biosci & Biotechnol, Biol Resource Ctr, Korean Collect Type Cultures KCTC, Jeongeup 56212, South Korea; [Litaker, Wayne] CSS Inc, Ctr Coastal Fisheries & Habitat Res, 101 Pivers Isl Rd, Beaufort, NC 28516 USA; [MacKenzie, Lincoln; Nishimura, Tomohiro; Smith, Kirsty F.] Cawthron Inst, Coastal & Freshwater Grp, Private Bag 2,98 Halifax St East, Nelson 7042, New Zealand; [Masseret, Estelle] Univ Montpellier, CNRS, IFREMER, MARBEC,IRD, Montpellier, France; [Matsuoka, Kazumi] Nagasaki Univ, Inst East China Sea Res, 1551-7 Taira Machi, Nagasaki 8512213, Japan; [Montresor, Marina] Stn Zool Anton Dohrn, I-80121 Naples, Italy; [Nagai, Satoshi] Natl Res Inst Fisheries Sci, Kanazawa Ku, 2-12-4 Fukuura, Yokohama, Kanagawa 2368648, Japan; [Nezan, Elisabeth] Natl Museum Nat Hist, DGD REVE, Stn Biol Marine Concarneau, Pl Croix, F-29900 Concarneau, France; [Okolodkov, Yuri B.] Univ Veracruzana, Inst Ciencias Marinas & Pesquerias, Lab Bot Marina & Planctol, Calle Mar Mediterraneo 314,Fracc Costa Verde, Boca Del Rio 94294, Veracruz, Mexico; [Orlova, Tatiana Yu] Russian Acad Sci, Far Eastern Branch, AV Zhirmunsky Natl Sci Ctr Marine Biol, Palchevskogo St 17, Vladivostok 690041, Russia; [Satta, Cecilia Teodora] Univ Sassari, Dipartimento Architettura Design & Urbanist, Via Piandanna 4, I-07100 Sassari, Italy; [Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje, South Korea; [Siano, Raffaele] IFREMER, DYNECO, PELAGOS, F-29280 Plouzane, France; [Steidinger, Karen] Florida Fish & Wildlife Conservat Commiss Fish &, 100 8th Ave SE, St Petersburg, FL 33701 USA; [Takano, Yoshihito] Kochi Univ, Fac Sci & Technol, Kochi, Japan; [Wolny, Jennifer] Maryland Dept Nat Resources, 1919 Lincoln Dr, Annapolis, MD 21401 USA; [Murray, Shauna] Univ Technol Sydney, Climate Change Cluster, Ultimo, NSW 2007, Australia	Ifremer; Kochi University; Woods Hole Oceanographic Institution; Instituto Politecnico Nacional - Mexico; University of Tasmania; Universidade de Aveiro; Universidade de Aveiro; Oregon State University; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Instituto Politecnico Nacional - Mexico; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Centro Mediterraneo de Investigaciones Marinas y Ambientales (CMIMA); CSIC - Instituto de Ciencias del Mar (ICM); Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; University of Tasmania; Ifremer; Hokkaido University; University of Tokyo; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Leibniz Institut fur Ostseeforschung Warnemunde; University of Copenhagen; Universiti Malaya; Korea Research Institute of Bioscience & Biotechnology (KRIBB); National Oceanic Atmospheric Admin (NOAA) - USA; Cawthron Institute; Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Developpement (IRD); Universite de Montpellier; Ifremer; Nagasaki University; Stazione Zoologica Anton Dohrn; Japan Fisheries Research & Education Agency (FRA); Museum National d'Histoire Naturelle (MNHN); Universidad Veracruzana; Russian Academy of Sciences; National Scientific Center of Marine Biology, Far East Branch of the Russian Academy of Sciences; University of Sassari; Korea Institute of Ocean Science & Technology (KIOST); Ifremer; Kochi University; University of Technology Sydney	Mertens, KN (通讯作者)，IFREMER, Stn Biol Marine, LER BO, Pl Croix,BP40537, F-29185 Concarneau, France.	Kenneth.mertens@ifremer.fr	john, uwe/S-3009-2016; Bolch, Christopher/J-7619-2014; Hess, Philipp/G-1761-2010; Nishimura, Tomohiro/G-6073-2019; Nagai, Satoshi/HOA-8686-2023; Gárate-Lizárraga, Ismael/GRS-5815-2022; Larsen, Jacob/AGU-5620-2022; Li, Zhun/IUQ-5309-2023; Murray, Shauna/JAN-6668-2023; Satta, Cecilia Teodora/AAF-6417-2020; Mertens, Kenneth/AAO-9566-2020; Leaw, Chui Pin/F-5220-2012; Mertens, Kenneth/C-3386-2015; Figueroa, Rosa/M-7598-2015; Lim, Po Teen/C-9758-2013; Calado, Antonio Jose/D-6263-2015; Orlova, Tatiana/AAU-8448-2020; Iwataki, Mitsunori/H-9640-2019; SAMPEDRO, NAGORE/I-1767-2015; Gu, Haifeng/ADN-4528-2022; Murray, Shauna A/K-5781-2015; Garces, Esther/C-5701-2011; Rene, Albert/D-4560-2012; Hallegraeff, Gustaaf/C-8351-2013	Chomerat, Nicolas/0000-0001-9691-6344; Mertens, Kenneth/0000-0003-2005-9483; Figueroa, Rosa/0000-0001-9944-7993; Lim, Po Teen/0000-0003-2823-0564; Calado, Antonio Jose/0000-0002-9711-0593; Orlova, Tatiana/0000-0002-5246-6967; Iwataki, Mitsunori/0000-0002-5844-2800; Nagai, Satoshi/0000-0001-7510-0063; SAMPEDRO, NAGORE/0000-0002-0829-5152; Gu, Haifeng/0000-0002-2350-9171; Murray, Shauna A/0000-0001-7096-1307; Montresor, Marina/0000-0002-2475-1787; Garces, Esther/0000-0002-2712-501X; SATTA, Cecilia Teodora/0000-0003-0130-9432; Rene, Albert/0000-0002-0488-3539; Hallegraeff, Gustaaf/0000-0001-8464-7343; Shin, Hyeon Ho/0000-0002-9711-6717; Wolny, Jennifer L./0000-0002-3556-5015; LI, ZHUN/0000-0001-8961-9966	NOAA ECOHAB program [NA15NOS4780181]; COPAs project [CTM2017-86121-R]	NOAA ECOHAB program(National Oceanic Atmospheric Admin (NOAA) - USA); COPAs project	Support to DMA from the NOAA ECOHAB program (Grant #NA15NOS4780181) is gratefully acknowledged. Support to EG, AR, NS from the COPAs project (CTM2017-86121-R) is acknowledged. IGL and CJBS are COFFA-IPN and EDI-IPN fellows. Marc Gottschling is acknowledged for interesting and civil discussions. Two anonymous reviewers are acknowledged for their useful comments.	ANDERSON DM, 1978, J PHYCOL, V14, P224, DOI 10.1111/j.1529-8817.1978.tb02452.x; Anderson DM, 2012, HARMFUL ALGAE, V14, P10, DOI 10.1016/j.hal.2011.10.012; [Anonymous], **DATA OBJECT**, DOI DOI 10.14284/362; [Anonymous], 2019, AUSTR SHELLFISH QUAL; Baggesen C, 2012, HARMFUL ALGAE, V19, P108, DOI 10.1016/j.hal.2012.06.005; Balech E., 1985, P33; BALECH E, 1989, PHYCOLOGIA, V28, P206, DOI 10.2216/i0031-8884-28-2-206.1; BALECH E, 1985, SARSIA, V70, P333, DOI 10.1080/00364827.1985.10419687; Balech E., 1995, The genus Alexandrium Halim (dinoflagellata), P151, DOI [10.2307/3226651., DOI 10.2307/3226651]; Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J	Sala-Pérez, M; Lattuada, M; Flecker, R; Anesio, A; Leroy, SAG				Sala-Perez, Manuel; Lattuada, Matteo; Flecker, Rachel; Anesio, Alexandre; Leroy, Suzanne A. G.			Dinoflagellate cyst assemblages as indicators of environmental conditions and shipping activities in coastal areas of the Black and Caspian Seas	REGIONAL STUDIES IN MARINE SCIENCE			English	Article						Dinoflagellate cyst; Pontocaspian region; Shipping; Environmental variables; Sediment	ANTIFOULING BOOSTER BIOCIDES; HARMFUL ALGAL BLOOMS; PHYTOPLANKTON COMMUNITIES; SPATIAL-DISTRIBUTION; SURFACE SEDIMENTS; EUTROPHICATION; TEMPERATURE; NUTRIENT; SALINITY; IMPACT	Pontocaspian ecosystems have deteriorated due to increasing anthropogenic pressures, including shipping activities. We studied the relationships between sedimentology, environmental and shipping variables, and the dinocyst distribution and abundance across the Pontocaspian region. Cyst diversity was characterized by the presence of 36 dinocyst morphotypes. Western Black Sea assemblages were dominated by Lingulodinium machaerophorum and Round brown cysts reaching values of 60% and 31.6% respectively. Lingulodinium machaerophorum, Impagidinium caspienense and Round brown cysts dominate the Caspian Sea assemblages with relative abundances of 80, 68 and 52%, respectively. Temperature, salinity and primary productivity are the main drivers for dinocyst distribution and species assemblages. Temperature controls the distribution and relative abundance of the potentially toxic species L. machaerophorum. Dinocysts assemblages reflect enriched-nutrient conditions in the North Caspian Sea and the Western Black Sea. Distance from the harbour correlates with dinocyst assemblages in the North and Middle Caspian Sea. This is likely to be related to the high shipping activities. (C) 2020 Elsevier B.V. All rights reserved.	[Sala-Perez, Manuel; Flecker, Rachel] Univ Bristol, Sch Geog Sci, Bristol, Avon, England; [Sala-Perez, Manuel; Flecker, Rachel] Univ Bristol, Cabot Inst, Bristol, Avon, England; [Lattuada, Matteo] Justus Liebig Univ Giessen, Dept Anim Ecol & Systemat, IFZ, Heinrich Buff Ring 26-32, D-35392 Giessen, Germany; [Anesio, Alexandre] Aarhus Univ, Dept Environm Sci, DK-4000 Roskilde, Denmark; [Leroy, Suzanne A. G.] Aix Marseille Univ, LAMPEA, Minist Culture, CNRS,Mediterranean Lab Prehist Europa Africa,UMR, 5 Rue Chateau Horloge, F-13094 Aix En Provence, France; [Sala-Perez, Manuel] Baltic Marine Environm Protect Commiss, Katajanokanlaituri 6 B, Helsinki 00160, Finland	University of Bristol; University of Bristol; Justus Liebig University Giessen; Aarhus University; Centre National de la Recherche Scientifique (CNRS); Aix-Marseille Universite	Sala-Pérez, M (通讯作者)，Univ Bristol, Sch Geog Sci, Bristol, Avon, England.; Sala-Pérez, M (通讯作者)，Univ Bristol, Cabot Inst, Bristol, Avon, England.	manuel.salaperez@helcom.fi	Anesio, Alexandre/A-7597-2008	Flecker, Rachel/0000-0002-9369-5328; Anesio, Alexandre/0000-0003-2990-4014	European Union [642973]; GeoEcoMar [PN 16 45 01]; Kazakhstan Agency of Applied Ecology [NBC-KAPE-270417]	European Union(European Union (EU)); GeoEcoMar; Kazakhstan Agency of Applied Ecology	The authors would like to thank the European Union's Horizon 2020 research and innovation programme and the Innovative Training Network 2015-2019 Drivers of Pontocaspian Biodiversity Rise & Demise (PRIDE) under the Marie Sklodowska-Curie grant agreement No 642973 for funding and supporting this research. We thank Dr Rowan Dejardin from the University of Bristol for his help with the grainsize analysis. We would like to thank Dr Dan Secrieru, Dr Silviu Radan and Dr Ana Bianca Pavel from the GeoEcoMar team (MN167 cruise and core project PN 16 45 01 01), Dr Diksha Bista and Anouk D'Hont for helping with the organization and sampling collection during the fieldwork in the Black Sea. We thank the KAPE team and especially Dr Feodor Klimov for his help with organization of fieldwork and in the permitting process for the Caspian Sea. The materials were collected based on ABS agreement NBC-KAPE-270417 with the Kazakhstan Agency of Applied Ecology. We are very grateful to Lea Rausch and Prof. Dr Marius Stoica for their help with the shipment. We would also thank Dr Francoise Chalie and Jean-Charles Mazur from the CEREGE for their help with the palynological analyses.	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J	Dzhembekova, N; Rubino, F; Nagai, S; Zlateva, I; Slabakova, N; Ivanova, P; Slabakova, V; Moncheva, S				Dzhembekova, Nina; Rubino, Fernando; Nagai, Satoshi; Zlateva, Ivelina; Slabakova, Nataliya; Ivanova, Petya; Slabakova, Violeta; Moncheva, Snejana			Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments - benefits and drawbacks	BIODIVERSITY DATA JOURNAL			English	Article						Black Sea; phytoplankton; cyst; morphology; metabarcoding	SP-NOV DINOPHYCEAE; SURFACE SEDIMENTS; RESTING CYSTS; TOXIC DINOFLAGELLATE; COASTAL SEDIMENTS; ASSEMBLAGES; ALEXANDRIUM; DIVERSITY; STABILITY; ABUNDANCE	One of the assets, assigned to the phytoplankton resting stages, is that of serving as the "memory" of the aquatic ecosystems and preserved biodiversity in the course of time. However, an accurate cyst identification proves to be a more difficult and extremely challenging process, even today. In order to gain a better taxonomic coverage of cyst assemblages in the Black Sea, an integrated approach of the classical morphological identification with metabarcoding methods (MySeq sequencing of V7-V9 regions of the 18S rDNA) was applied on thirteen surface sediment samples collected from different sites. A total number of 112 dinoflagellate taxa was detected at the species level and ascribed to 51 genera. In general, it is the molecular analysis that yields a higher number of taxa as compared to those obtained through the morphological taxonomy (66 taxa based on the DNA sequences versus 56 morphologically-identified taxa). Besides, it should be pointed out that the integrated dataset includes 14 potentially toxic dinoflagellate species. Discerned, subsequently, was a good dataset consistency for ten species, followed by some discrepancies as to a number of taxa, identified with one of the methods only, due to specific methodological biases. On the whole, it could be concluded that the combination of morphological and molecular methods is likely to increase the potential for a more reliable taxonomic assessment of phytoplankton diversity in marine sediments which, in turn, proves conclusively the utmost importance of the integrated approach.	[Dzhembekova, Nina; Zlateva, Ivelina; Slabakova, Nataliya; Ivanova, Petya; Moncheva, Snejana] Bulgarian Acad Sci, Inst Oceanol Fridtjof Nansen, Marine Biol & Ecol Dept, Varna, Bulgaria; [Rubino, Fernando] Natl Res Council CNR IRSA, Water Res Inst, Unit Talassog A Cerruti, Taranto, Italy; [Nagai, Satoshi] Fisheries Res & Educ Agcy, Natl Res Inst Fisheries Sci, Res Ctr Aquat Genom, Yokohama, Kanagawa, Japan; [Slabakova, Violeta] Bulgarian Acad Sci, Inst Oceanol Fridtjof Nansen, Ocean Technol Dept, Varna, Bulgaria	Bulgarian Academy of Sciences; Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR); Japan Fisheries Research & Education Agency (FRA); Bulgarian Academy of Sciences	Moncheva, S (通讯作者)，Bulgarian Acad Sci, Inst Oceanol Fridtjof Nansen, Marine Biol & Ecol Dept, Varna, Bulgaria.	snejanam@abv.bg	Ivanova, Petya/A-3217-2014; Nagai, Satoshi/HOA-8686-2023; Slabakova, Nataliya/LHA-4700-2024; Rubino, Fernando/GOP-0332-2022; Zlateva, Ivelina/P-5068-2019; Dzhembekova, Nina/HTN-3019-2023; Zlateva, Ivelina/G-1462-2018	Slabakova, Violeta/0000-0002-3089-0126; Slabakova, Nataliya/0000-0002-3294-5346; Dzhembekova, Nina/0000-0001-9620-6422; Nagai, Satoshi/0000-0001-7510-0063; Zlateva, Ivelina/0000-0003-4133-5627	National Science Fund, Ministry of Education and Science (MES), Bulgaria [01/8]; MASRI - Infrastructure for Sustainable Development of Marine Research; Participation of Bulgaria in the European Infrastructure Euro-Argo, National Roadmap for Scientific Infrastructure (2017-2023) of Republic of Bulgaria [D01-158]	National Science Fund, Ministry of Education and Science (MES), Bulgaria; MASRI - Infrastructure for Sustainable Development of Marine Research; Participation of Bulgaria in the European Infrastructure Euro-Argo, National Roadmap for Scientific Infrastructure (2017-2023) of Republic of Bulgaria	This study was supported by the National Science Fund, Ministry of Education and Science (MES), Bulgaria under project "Phytoplankton cysts -an intricacy between a "memory" or a "potential" for Black Sea biodiversity and algal blooms" (Grant number 01/8, 16.12.2016) and MASRI - Infrastructure for Sustainable Development of Marine Research including the Participation of Bulgaria in the European Infrastructure Euro-Argo, National Roadmap for Scientific Infrastructure (2017-2023) of Republic of Bulgaria (Contract number D01-158/28.08.2018).	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Data J.	AUG 18	2020	8								E55172	10.3897/BDJ.8.e55172	http://dx.doi.org/10.3897/BDJ.8.e55172			20	Biodiversity Conservation	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation	NB3ZO	32903988	Green Published, gold			2025-03-11	WOS:000560454700001
J	Marret, F; Bradley, L; de Vernal, A; Hardy, W; Kim, SY; Mudie, P; Penaud, A; Pospelova, V; Price, AM; Radi, T; Rochon, A				Marret, Fabienne; Bradley, Lee; de Vernal, Anne; Hardy, William; Kim, So-Young; Mudie, Peta; Penaud, Aurelie; Pospelova, Vera; Price, Andrea M.; Radi, Taoufik; Rochon, Andre			From bi-polar to regional distribution of modern dinoflagellate cysts, an overview of their biogeography	MARINE MICROPALEONTOLOGY			English	Article						Dinoflagellate cyst; Modern distribution; Global; Bi-polar; Endemism	RECENT MARINE-SEDIMENTS; NORTH-ATLANTIC OCEAN; SURFACE SEDIMENTS; THECA RELATIONSHIP; BLACK-SEA; PROTOCERATIUM-RETICULATUM; DISTRIBUTION PATTERNS; GONYAULAX-BALTICA; SOUTHWEST PACIFIC; BRITISH-COLUMBIA	This paper examines the distribution of 91 modern dinoflagellate cyst taxa from 3636 locations across the world's oceans. Patterns of distributions among the taxa included bi-polarity, cosmopolitan, northern versus southern hemispheres, and geographically restricted. Of the 91 taxa, three dominate these 3636 assemblages at the global scale, Brigantedinium species, Operculodinium centrocarpum sensu Wall and Dale 1966 and some species of Spiniferites. Whereas Brigantedinium is a true cosmopolitan taxon, with high abundances in each ocean, Operculodinium centrocarpum sensu Wall and Dale 1966 shows high abundances in polar to temperate regions in the Northern Hemisphere, and in tropical to sub-tropical waters in the Southern Hemisphere. Spiniferites species show highest occurrences in the Southern Hemisphere. This study also highlights three true bi-polar species, Impagidinium pallidum, Islandinium minutum and cyst of Polarella glacialis. Only a few taxa are strictly endemic, either being relics of ancient seas such as the Paratethys (Spiniferites cruciformis) or linked to specific environmental conditions. However, recent studies have shown recent worldwide dispersal of these endemic species possibly due to human activities. Overall, this compilation has highlighted the progress made since the early 1970s on our understanding of these important tracers of environmental conditions but also gaps in our knowledge of their distribution in pelagic regions of the Pacific and Indian Oceans as well as under Arctic sea ice.	[Marret, Fabienne] Univ Liverpool, Sch Environm Sci, Liverpool L69 7ZT, Merseyside, England; [Bradley, Lee] Manchester Metropolitan Univ, Sch Sci & Environm, Manchester M1 5GD, Lancs, England; [de Vernal, Anne; Radi, Taoufik] Univ Quebec Montreal, GEOTOP, CP 8888,Succ Ctr Ville, Montreal, PQ H3C 3P8, Canada; [Hardy, William; Penaud, Aurelie] Univ Brest, UMR 6538 Lab Geosci Ocean LGO, CNRS IUEM, CNRS, F-29280 Plouzane, France; [Kim, So-Young] Korea Polar Res Inst, Div Polar Ocean Sci, Incheon 21990, South Korea; [Mudie, Peta] Geol Survey Canada Atlantic, Box 1002, Dartmouth, NS B2Y 4A2, Canada; [Pospelova, Vera] Univ Victoria, STN CSC, Sch Earth & Ocean Sci, Bob Wright Ctr A405,POB 1700, Victoria, BC V8W 2Y2, Canada; [Price, Andrea M.] Louisiana Univ Marine Consortium, 8124 Highway 56, Chauvin, LA 70344 USA; [Rochon, Andre] Univ Quebec Rimouski, Inst Sci Mer Rimouski, Rimouski, PQ G5L 3A1, Canada; [Price, Andrea M.] Univ Haifa, Dept Marine Geosci, 199 Abba Khoushy Ave, IL-3498838 Haifa, Israel	University of Liverpool; Manchester Metropolitan University; University of Quebec; University of Quebec Montreal; Universite de Bretagne Occidentale; Centre National de la Recherche Scientifique (CNRS); Korea Polar Research Institute (KOPRI); Natural Resources Canada; Lands & Minerals Sector - Natural Resources Canada; Geological Survey of Canada; University of Victoria; University of Quebec; Universite du Quebec a Rimouski; University of Haifa	Marret, F (通讯作者)，Univ Liverpool, Sch Environm Sci, Liverpool L69 7ZT, Merseyside, England.	f.marret@liverpool.ac.uk	de Vernal, Anne/D-5602-2013; Bradley, Lee/AAA-6818-2019; Kim, So-Young/JFS-7698-2023; Penaud, Aurelie/F-2485-2011	Penaud, Aurelie/0000-0003-3578-4549; Bradley, Lee/0000-0003-0833-9351; Marret-Davies, Fabienne/0000-0003-4244-0437; Pospelova, Vera/0000-0003-4049-8133	Zuckerman STEM Leadership Program; project titled `Korea-Arctic Ocean Observing System' - MOF [20160245]	Zuckerman STEM Leadership Program; project titled `Korea-Arctic Ocean Observing System' - MOF(Ministry of Oceans & Fisheries (MOF), Republic of Korea)	This work was supported in part by the Zuckerman STEM Leadership Program through a postdoctoral scholarship to Andrea Price. So-Young Kim acknowledges support from the project titled `Korea-Arctic Ocean Observing System (20160245)', funded by the MOF.	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Zonneveld KAF, 2013, REV PALAEOBOT PALYNO, V191, P1, DOI 10.1016/j.revpalbo.2012.08.003	110	37	38	2	18	ELSEVIER	AMSTERDAM	RADARWEG 29, 1043 NX AMSTERDAM, NETHERLANDS	0377-8398	1872-6186		MAR MICROPALEONTOL	Mar. Micropaleontol.	AUG	2020	159								101753	10.1016/j.marmicro.2019.101753	http://dx.doi.org/10.1016/j.marmicro.2019.101753			15	Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Paleontology	NS5CQ		Green Accepted			2025-03-11	WOS:000572279600006
J	Van Nieuwenhove, N; Pospelova, V; de Vernal, A; Rochon, A				Van Nieuwenhove, Nicolas; Pospelova, Vera; de Vernal, Anne; Rochon, Andre			A historical perspective on the development of the Northern Hemisphere modern dinoflagellate cyst database Preface	MARINE MICROPALEONTOLOGY			English	Editorial Material							SEA-SURFACE TEMPERATURE; HYDROGRAPHIC CONDITIONS; PHYLOGENETIC POSITIONS; DISTRIBUTION PATTERNS; THECA RELATIONSHIP; MARINE-SEDIMENTS; RESTING CYSTS; FRESH-WATER; SP-NOV; ASSEMBLAGES		[Van Nieuwenhove, Nicolas] Univ New Brunswick, Dept Earth Sci, 2 Bailey Dr, Fredericton, NB E3B 5A3, Canada; [Pospelova, Vera] Univ Victoria, Sch Earth & Ocean Sci, POB 1700,STN CSC, Victoria, BC V8W 2Y2, Canada; [de Vernal, Anne] Univ Quebec Montreal, Ctr GEOTOP, 201 Ave President Kennedy, Montreal, PQ H3C 3P8, Canada; [Rochon, Andre] Univ Quebec Rimouski, Inst Sci Mer Rimouski, 310 Allee Ursulines, Rimouski, PQ G5L 3A1, Canada; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, 116 Church St SE, Minneapolis, MN 55455 USA	University of New Brunswick; 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Micropaleontol.	AUG	2020	159								101824	10.1016/j.marmicro.2020.101824	http://dx.doi.org/10.1016/j.marmicro.2020.101824			4	Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Paleontology	NS5CQ					2025-03-11	WOS:000572279600011
J	Riding, JB				Riding, James B.			The literature on Triassic, Jurassic and earliest Cretaceous dinoflagellate cysts: supplement five (vol 44, pg 391, 2020)	PALYNOLOGY			English	Correction																		Riding JB, 2020, PALYNOLOGY, V44, P391, DOI 10.1080/01916122.2020.1772897	1	0	0	1	3	TAYLOR & FRANCIS INC	PHILADELPHIA	530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA	0191-6122	1558-9188		PALYNOLOGY	Palynology	JUL 2	2020	44	3					563	563		10.1080/01916122.2020.1805169	http://dx.doi.org/10.1080/01916122.2020.1805169			1	Plant Sciences; Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Paleontology	NA4ZV		Bronze			2025-03-11	WOS:000559827600001
J	Yamada, Y; Sato, W; Kobiyama, A; Ogata, T				Yamada, Yuichiro; Sato, Wataru; Kobiyama, Atsushi; Ogata, Takehiko			Feeding and reproduction including diapausing egg production as cold-water adaptations for overwintering of <i>Acartia steueri</i> (Copepoda, Calanoida) in Okkirai Bay, Sanriku, northern Japan	PLANKTON & BENTHOS RESEARCH			English	Article						copepod; Acartia steueri; feeding habits; egg production; diapausing egg	RESTING EGGS; SOUTHEASTERN COAST; BIFILOSA COPEPODA; ESTUARINE COPEPOD; ILKWANG BAY; TONSA; MARINE; ABUNDANCE; BEHAVIOR; SEA	Feeding experiments with a natural microplankton assemblage and egg production experiments with the neritic copepod Acartia steueri were conducted simultaneously in an inlet on the Sanriku coast during autumn. Diapausing egg production status of A. steueri was also investigated. Further, A. steueri dominated during September to October and then gradually decreased until December, before disappearing after January. The dominant microplankton in natural waters during the study period were dinoflagellates, followed by centric and pennate diatoms and oligotrich ciliates. A. steueri fed only on dinoflagellates and oligotrich ciliates at rates of 87.0-309 and 17.7-71.5 cells ind(-1) d(-1), respectively. Egg production rate of A. steueri ranged from 1.6 to 15.0 eggs female(-1) d(-1) and significantly increased as ingestion rates of dinoflagellates and oligotrich ciliates increased. The copepod began producing diapausing eggs in October, and by late December, 86% of the eggs produced were diapausing. The population's egg production rate was highest in September (18,961 eggs m(-3) d(-1)) and gradually decreased through the end of December. These dietary and diapausing egg production seasons of A. steueri in the Sanriku area are significantly different from the results of previous studies in the temperate zone, where the copepod mainly fed on diatoms and produced diapausing eggs during spring. A. steueri can alter its feeding habits and the timing of diapausing egg production in response to changes in habitat. The flexibility of this species to environmental change has likely allowed expansion of its geographical distribution.	[Yamada, Yuichiro; Sato, Wataru; Kobiyama, Atsushi; Ogata, Takehiko] Kitasato Univ, Sch Marine Biosci, Minami Ku, 1-15-1 Kitasato, Sagamihara, Kanagawa 2520373, Japan	Kitasato University	Yamada, Y (通讯作者)，Kitasato Univ, Sch Marine Biosci, Minami Ku, 1-15-1 Kitasato, Sagamihara, Kanagawa 2520373, Japan.	yyamada@kitasato-u.ac.jp	Sato, Wataru/E-7503-2017		research program "Tohoku Ecosystem -Associated Marine Science" from the Ministry of Education, Culture, Sports, Science and Technology in Japan	research program "Tohoku Ecosystem -Associated Marine Science" from the Ministry of Education, Culture, Sports, Science and Technology in Japan	We are grateful to the staff of the Sanriku Education and Research Center for Marine Biosciences, Kitasato University for helping with field sampling and experiments. Part of this study was supported by the research program "Tohoku Ecosystem -Associated Marine Science" from the Ministry of Education, Culture, Sports, Science and Technology in Japan.	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BIODIVERSITY LAB, 3-1-1 MINATOMACHI, HAKODATE, HOKKAIDO, 041-8611, JAPAN	1880-8247	1882-627X		PLANKTON BENTHOS RES	Plankton Benthos Res.	JUL	2020	15	3					269	278		10.3800/pbr.15.269	http://dx.doi.org/10.3800/pbr.15.269			10	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	PH6BW		gold			2025-03-11	WOS:000600496500009
J	Liu, ML; Gu, HF; Krock, B; Luo, ZH; Zhang, YB				Liu, Minlu; Gu, Haifeng; Krock, Bernd; Luo, Zhaohe; Zhang, Yubo			Toxic dinoflagellate blooms of <i>Gymnodinium catenatum</i> and their cysts in Taiwan Strait and their relationship to global populations	HARMFUL ALGAE			English	Article						Blooms; Ecotype; Growth; Hydroxybenzoate toxins; Paralytic shellfish toxins	SP-NOV DINOPHYCEAE; RECENT MARINE-SEDIMENTS; GULF-OF-CALIFORNIA; PARALYTIC SHELLFISH; RESTING CYSTS; LIFE-CYCLE; MICRORETICULATE CYST; SPATIAL-DISTRIBUTION; BAHIA-CONCEPCION; MEXICAN PACIFIC	Gymnodinium catenatum is able to produce paralytic shellfish toxins (PSTs) and was responsible for a massive bloom in the Taiwan Strait, East China Sea, in June 2017, which resulted in serious human poisoning and economic losses. To understand the origin of the bloom and determine the potential for blooms in subsequent years, water and sediment samples collected in the Taiwan Strait from 2016 to 2019 were analyzed for cells and cysts using light microscopy (LM) and/or quantitative polymerase chain reaction (qPCR). The morphology of both cells and cysts from the field and cultures was examined with LM and scanning electron microscopy (SEM). Large subunit (LSU) and/or internal transcribed spacer (ITS)-5.8S rRNA gene sequences were obtained in 13 isolates from bloom samples and five strains from cysts. In addition, cells of strains TIO523 and GCLY02 (from the Taiwan Strait and Yellow Sea of China, respectively) were subjected to growth experiments, and cysts from the field were used for germination experiments under various temperatures. Our strains shared identical LSU and ITS-5.8S rRNA gene sequences with those from other parts of the world, and therefore belonged to a global population. A low abundance of G. catenatum cells were detected during most of the sampling period, but a small bloom was encountered in Quanzhou on June 8, 2018. Few cysts were observed in 2016 but a marked increase was observed after the bloom in 2017, with a highest density of 689 cysts cm(-3). Cysts germinated at temperatures between 14 and 23 degrees C with a final germination rate over 93%. Strains TIO523 and GCLY02 displayed growth at temperatures between 17 and 26 degrees C and 14 and 26 degrees C, respectively, with both strains displaying the highest growth rate of ca. 0.5 divisions d(-1) at 23 degrees C. The PSTs of the three strains and cysts from the sediments were analyzed by liquid chromatography with tandem mass spectrometry (LC-MS/MS). All strains were able to produce PSTs, which were dominated by N-sulfocarbamoyl C toxins (C1/2, 53.0-143.5 pg cell(-1)) and decarbamoyl gonyautoxins (dcGTX2/3, 26.7-52.1 pg cell(-1)), although they were not detected in cysts. However, hydroxybenzoyl (GC) toxins were detected in both cells and cysts. Our results suggested that the population in the Taiwan Strait belonged to a warm water ecotype and has a unique toxin profile. Our results also suggested that the persistence of cells in the water column may have initiated the bloom.	[Liu, Minlu; Gu, Haifeng; Luo, Zhaohe] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Gu, Haifeng] Nanjing Univ Informat Sci & Technol, Sch Marine Sci, Nanjing 210044, Peoples R China; [Krock, Bernd] Helmholtz Zentrum Polar & Meeresforsch, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany; [Zhang, Yubo] Ocean Univ China, Dept Marine Biol, Qingdao 266003, Peoples R China	Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; Nanjing University of Information Science & Technology; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Ocean University of China	Gu, HF (通讯作者)，Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China.	guhaifeng@tio.org.cn	Krock, Bernd/ABB-7541-2020; Luo, Zhaohe/ITT-7163-2023; Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171; Luo, Zhaohe/0000-0001-8662-2414	Natural Science Foundation of Fujian, China [2017J05051, 2019J05150]; Scientific Research Foundation of Third Institute of Oceanography, MNR [2019017]; National Natural Science Foundation of China [41676117]; National Key Research and Development Program of China [2016YFE0202100]; Helmholtz-Gemeinschaft Deutscher Forschungszentren through the research program "Polar regions And Coasts in the changing Earth System"(PACES II) of the Alfred-Wegener-Institut, Helmholtz Zentrum fur Polar-und Meeresforschung; NSFC Shiptime Sharing Project [41849901]	Natural Science Foundation of Fujian, China(Natural Science Foundation of Fujian Province); Scientific Research Foundation of Third Institute of Oceanography, MNR; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); National Key Research and Development Program of China(National Key Research & Development Program of China); Helmholtz-Gemeinschaft Deutscher Forschungszentren through the research program "Polar regions And Coasts in the changing Earth System"(PACES II) of the Alfred-Wegener-Institut, Helmholtz Zentrum fur Polar-und Meeresforschung; NSFC Shiptime Sharing Project	This project was supported by the Natural Science Foundation of Fujian, China (2019J05150), Scientific Research Foundation of Third Institute of Oceanography, MNR (2019017), the National Natural Science Foundation of China (41676117), the Natural Science Foundation of Fujian, China (2017J05051), the National Key Research and Development Program of China (2016YFE0202100) and by the Helmholtz-Gemeinschaft Deutscher Forschungszentren through the research program "Polar regions And Coasts in the changing Earth System"(PACES II) of the Alfred-Wegener-Institut, Helmholtz Zentrum fur Polar-und Meeresforschung. Data and samples were collected onboard of R/V "Beidou" implementing the open research cruise NORC2019-01 supported by NSFC Shiptime Sharing Project (41849901).	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J	Dai, L; Geng, HX; Yu, RC; Liu, Y; Zhao, JY; Wang, JX; Zhang, QC; Kong, FZ; Zhou, MJ				Dai, Li; Geng, Hui-Xia; Yu, Ren-Cheng; Liu, Yang; Zhao, Jia-Yu; Wang, Jin-Xiu; Zhang, Qing-Chun; Kong, Fan-Zhou; Zhou, Ming-Jiang			Distribution of <i>Alexandrium pacificum</i> cysts in the area adjacent to the Changjiang River estuary, China	MARINE POLLUTION BULLETIN			English	Article						Alexandrium pacificum; Alexandrium catenella; Cysts; qPCR; Nearshore Kuroshio Branch Current; Toxic algal blooms	TAMARENSE RESTING CYSTS; TIME PCR ASSAY; DINOFLAGELLATE CYSTS; SURFACE SEDIMENTS; YELLOW SEA; SPATIAL-DISTRIBUTION; ONSHORE INTRUSION; GENUS ALEXANDRIUM; PUGET-SOUND; MASAN BAY	The coastal waters adjacent to the Changjiang River estuary (CRE) are characterized by nutrient pollution and recurrent harmful algal blooms. In this study, resting cysts of Alexandrium pacificum Litaker and A. catenella (Whedon & Kof.) Balech, two major species within the A. tamarense species complex in Chinese coastal waters, were studied using sediment samples collected from the area adjacent to the CRE in May 2014 and December 2015. Cysts were detected with two real-time quantitative PCR assays, as well as the primuline-staining method. Only cysts of A. pacificum were found in the study area, which mainly distributed in the mud depositional zone near the CRE. A low-abundance region of the cysts present in spring is in accordance with the intrusive pathway of the Nearshore Kuroshio Branch Current (NKBC), suggesting that A. pacificum blooms could be regulated by seasonal intrusion of NKBC.	[Dai, Li; Yu, Ren-Cheng; Liu, Yang; Zhao, Jia-Yu; Wang, Jin-Xiu; Zhang, Qing-Chun; Kong, Fan-Zhou; Zhou, Ming-Jiang] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Yu, Ren-Cheng; Zhang, Qing-Chun; Kong, Fan-Zhou] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Dai, Li; Yu, Ren-Cheng; Zhao, Jia-Yu; Wang, Jin-Xiu] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Yu, Ren-Cheng; Zhang, Qing-Chun; Kong, Fan-Zhou] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Geng, Hui-Xia] Chinese Acad Sci, Inst Oceanol, Changjiang River Estuary Ecosyst Res Stn, Qingdao 266071, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences; Institute of Oceanology, CAS	Yu, RC (通讯作者)，Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China.	rcyu@qdio.ac.cn	Liu, Yang/ITT-4369-2023; Geng, Hui-Xia/X-5380-2018; Yu, Rencheng/J-4450-2017	Yu, Rencheng/0000-0001-6430-9224	National Key Research and Development Program by the Ministry of Science and Technology (MoST), [2017YFC1600701, 2016YFE0101500]; Science and Technology Basic Resource Investigation Program of China [2018FY100200]; Strategic Priority Research Program of Chinese Academy of Sciences (CAS) [XDA11020304]	National Key Research and Development Program by the Ministry of Science and Technology (MoST),; Science and Technology Basic Resource Investigation Program of China; Strategic Priority Research Program of Chinese Academy of Sciences (CAS)	This study was supported by a project financed by the National Key Research and Development Program 2017YFC1600701 and 2016YFE0101500 by the Ministry of Science and Technology (MoST), and the Science and Technology Basic Resource Investigation Program of China (grant 2018FY100200). Sample collection during the two cruises was supported by the Strategic Priority Research Program of Chinese Academy of Sciences (CAS) (grant XDA11020304).	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Pollut. Bull.	JUL	2020	156								111206	10.1016/j.marpolbul.2020.111206	http://dx.doi.org/10.1016/j.marpolbul.2020.111206			9	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	LW5AS	32365006				2025-03-11	WOS:000539160000017
J	Rodríguez-Villegas, C; Díaz, PA; Pizarro, G; Salgado, P; Pérez-Santos, I; Díaz, M; Seguel, M; Baldrich, A; Bravo, I; Iriarte, L; Figueroa, RI				Rodriguez-Villegas, Camilo; Diaz, Patricio A.; Pizarro, Gemita; Salgado, Pablo; Perez-Santos, Ivan; Diaz, Manuel; Seguel, Miriam; Baldrich, Angela; Bravo, Isabel; Iriarte, Luis; Figueroa, Rosa, I			<i>Alexandrium catenella</i> cyst accumulation by passive and active dispersal agents: Implications for the potential spreading risk in Chilean Patagonian fjords	HARMFUL ALGAE			English	Article						Alexandrium catenella; Resting cysts; Fishing nets; Chilean Patagonia; Mussels; Population dynamics	DINOFLAGELLATE BLOOMS; GENUS ALEXANDRIUM; RESTING CYSTS; VARIABILITY; TRANSPORT; VIABILITY; ECOSYSTEM; DYNAMICS; IMPACTS; PASSAGE	The dinoflagellate Alexandrium catenella is responsible for paralytic shellfish poisoning and negative socioeconomic impacts on the fishing industry and aquaculture. In Chilean Patagonia, the reasons underlying the significant increase in the geographical extension (from south to north) of A. catenella blooms during the last five decades are not well understood. To assess the potential spreading risk of A. catenella during an intense austral summer bloom, we conducted an in situ experiment in a "hotspot" of this dinoflagellate in southern Chile. The objective was to assess the accumulation of A. catenella resting cysts in passive (fishing nets) and active (mussels) dispersal agents during the phase of bloom decline. Large numbers of resting cysts were detected in fishing nets (maximum of 5334 cysts net(-1) per month) at 5 m depth and in mussels (maximum of 16 cysts g(-1) of digestive gland) near Vergara Island. The potential of these vectors to serve as inoculum sources and the implications of our findings for A. catenella population dynamics are discussed.	[Rodriguez-Villegas, Camilo; Baldrich, Angela] Univ Los Lagos, Menc Conservac & Manejo Recursos Nat, Programa Doctorado Ciencias, Camino Chinquihue Km 6, Puerto Montt, Chile; [Diaz, Patricio A.; Perez-Santos, Ivan] Univ Los Lagos, Ctr I Mar, Casilla 557, Puerto Montt, Chile; [Diaz, Patricio A.] Univ Los Lagos, CeBiB, Casilla 557, Puerto Montt, Chile; [Pizarro, Gemita; Salgado, Pablo] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Enrique Abello 0552, Punta Arenas, Chile; [Perez-Santos, Ivan] Univ Concepcion, Ctr Invest Oceanog COPAS Sur Austral, Concepcion, Chile; [Diaz, Manuel] Univ Austral Chile, Programa Invest Pesquera, Sede Puerto Montt, Chile; [Diaz, Manuel] Univ Austral Chile, Inst Acuicultura, Sede Puerto Montt, Chile; [Seguel, Miriam] Univ Austral Chile, Ctr Reg Anal Recursos & Medio Ambiente CERAM, Los Pinos S-N, Balneario Pelluco, Puerto Montt, Chile; [Bravo, Isabel; Figueroa, Rosa, I] Inst Espanol Oceanog IEO, Ctr Oceanog Vigo, Subida A Radio Faro 50, Vigo 36390, Spain; [Iriarte, Luis] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Noc CREAN, Sargento Aldea 431, Puerto Aysen, Chile	Universidad de Los Lagos; Universidad de Los Lagos; Universidad de Los Lagos; Instituto de Fomento Pesquero (Valparaiso); Universidad de Concepcion; Universidad Austral de Chile; Universidad Austral de Chile; Universidad Austral de Chile; Spanish Institute of Oceanography; Instituto de Fomento Pesquero (Valparaiso)	Rodríguez-Villegas, C (通讯作者)，Univ Los Lagos, Menc Conservac & Manejo Recursos Nat, Programa Doctorado Ciencias, Camino Chinquihue Km 6, Puerto Montt, Chile.	camilo.rodriguez@ulagos.cl	Menendez Gonzalez, Manuel/GSJ-2393-2022; Salgado, Pablo/KMA-0636-2024; Díaz, Patricio/B-8128-2018; Perez, Ivan/B-9321-2018; Figueroa, Rosa/M-7598-2015; Baldrich, Angela M./AAC-8054-2022; Rodriguez Villegas, Camilo/AAB-8563-2022	pizarro, gemita/0000-0003-2974-2609; , Ivan Perez-Santos/0000-0002-0184-1122; Figueroa, Rosa/0000-0001-9944-7993; Baldrich, Angela M./0000-0002-2624-7357; Rodriguez Villegas, Camilo/0000-0002-1429-2775	Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2016) [79160065]; Universidad de Los Lagos; Fisheries Undersecretary of Chile; International Cooperation Programme of the CONICYT [REDI170575];  [AFB170006]	Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2016); Universidad de Los Lagos; Fisheries Undersecretary of Chile; International Cooperation Programme of the CONICYT; 	Patricio A. Diaz was funded by the Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2016, 79160065). Camilo Rodriguez-Villegas had a Ph.D student fellowship from Universidad de Los Lagos. Ivan Perez-Santos was funded by AFB170006. This work was funded by the Fisheries Undersecretary of Chile (projects 2009 and 2010) and supported by REDI170575 from the International Cooperation Programme of the CONICYT.	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J	Hadjadji, I; Laabir, M; Frihi, H; Collos, Y; Shao, ZJ; Berrebi, P; Abadie, E; Amzil, Z; Chomerat, N; Rolland, JL; Rieuvilleneuve, F; Masseret, E				Hadjadji, Imen; Laabir, Mohamed; Frihi, Hocine; Collos, Yves; Shao, Zhao Jun; Berrebi, Patrick; Abadie, Eric; Amzil, Zouher; Chomerat, Nicolas; Rolland, Jean Luc; Rieuvilleneuve, Fabien; Masseret, Estelle			Unsuspected intraspecific variability in the toxin production, growth and morphology of the dinoflagellate <i>Alexandrium pacificum</i> RW Litaker (Group IV) blooming in a South Western Mediterranean marine ecosystem, Annaba Bay (Algeria)	TOXICON			English	Article						Alexandrium pacificum; Mediterranean; Toxin profile; Growth; Intraspecific variability	GENUS ALEXANDRIUM; CATENELLA DINOPHYCEAE; PROTOGONYAULAX-TAMARENSIS; MINUTUM DINOPHYCEAE; COASTAL WATERS; BALLAST WATER; KOFOID BALECH; THAU LAGOON; TOXICITY; HARMFUL	Physiological plasticity gives HABs species the ability to respond to variations in the surrounding environment. The aim of this study was to examine morphological and physiological variability in Alexandrium pacificum R.W. Litaker (Group IV) (former Alexandrium catenella) blooming in Annaba bay, Algeria. Monoclonal cultures of up to 30 strains of this neurotoxic dinoflagellate were established by the germination of single resting cysts from the surface sediment of this southern Mediterranean marine ecosystem. Ribotyping confirmed formally for the first time that A. pacificum is developing in Eastern Algerian waters. Toxin analyses of A. pacificum strains revealed substantial intraspecific variability in both the profile and toxin amount. However, the toxin profile of most strains is characterized by the dominance of GTX6 (up to 96 mol %) which is the less toxic paralytic molecule. The toxin concentrations in the isolated strains varied widely between 3.8 and 30.82 fmol cell(-1). We observed an important variation in the growth rate of the studied A. pacificum strains with values ranging from 0.05 to 0.33 d(-1). The lag time of the studied strains varied widely and ranged from 4 to 20 days. The intraspecific diversity could be a response to the selection pressure which may be exerted by different environmental conditions over time and which can be genetically and in turn physiologically expressed. This study highlights, for the first time, that the sediment of a limited area holds an important diversity of A. pacificum cysts which give when germinate populations with noticeable physiological plasticity. Consequently, this diversified natural populations allow an exceptional adaptation to specific environmental conditions to outcompete local micmalgae and to establish HABs which could explain why this dinoflagellate is successful and expanding worldwide.	[Hadjadji, Imen; Frihi, Hocine] Univ Badji Mokhtar Annaba, Lab Bioressources Marines, BP 12, El Hadjar 23000, Annaba, Algeria; [Hadjadji, Imen; Laabir, Mohamed; Collos, Yves; Abadie, Eric; Rieuvilleneuve, Fabien; Masseret, Estelle] Univ Montpellier, IFREMER, CNRS, MARBEC,UMR 9190,IRD, F-34095 Montpellier, France; [Shao, Zhao Jun; Berrebi, Patrick] Univ Montpellier, CNRS, EPHE, ISEM,IRD, CC065,Pl E Bataillon, Montpellier 34095 5, France; [Amzil, Zouher] IFREMER, Lab Environm Microbiol & Phycotoxines, Rue Ile dYeu BP 21105, Nantes 44311 3, France; [Chomerat, Nicolas] IFREMER, Stn Biol Marine, Lab Environm & Ressources Bretagne Occidentale, Pl Croix, Concarneau 29900, France; [Rolland, Jean Luc] Univ Montpellier, UPVD, IFREMER, CNRS,IHPE, Montpellier, France	Universite Badji Mokhtar - Annaba; Universite de Montpellier; Ifremer; Institut de Recherche pour le Developpement (IRD); Centre National de la Recherche Scientifique (CNRS); CNRS - Institute of Ecology & Environment (INEE); Universite de Montpellier; Centre National de la Recherche Scientifique (CNRS); Universite PSL; Ecole Pratique des Hautes Etudes (EPHE); Institut de Recherche pour le Developpement (IRD); Ifremer; Ifremer; Universite de Montpellier; Centre National de la Recherche Scientifique (CNRS); Ifremer	Laabir, M (通讯作者)，Univ Montpellier, IFREMER, CNRS, MARBEC,UMR 9190,IRD, F-34095 Montpellier, France.	mohamed.laabir@umontpellier.fr	Hocine, FREHI/R-8856-2016	ABADIE, Eric/0000-0001-9431-2010; Chomerat, Nicolas/0000-0001-9691-6344; Rolland, jean-luc/0000-0001-9823-6588; FRIHI, Hocine/0000-0001-8104-2875	French National Programme Ecosphere Continentale et Cotiere - EC2CO; Fondation pour la Recherche sur la Biodiversite - INVALEX Project [AAPIN-2009-036]	French National Programme Ecosphere Continentale et Cotiere - EC2CO; Fondation pour la Recherche sur la Biodiversite - INVALEX Project	This work was supported by Grants from the French National Programme Ecosphere Continentale et Cotiere - EC2CO and from the Fondation pour la Recherche sur la Biodiversite - INVALEX Project (AAPIN-2009-036).	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J	Keskes, FA; Ayadi, N; Atoui, A; Mahfoudi, M; Abdennadher, M; Walha, LD; Ben Ismail, S; Ben Abdallah, O; Khammeri, Y; Pagano, M; Hamza, A; Hassen, MB				Keskes, Fatma Abdmouleh; Ayadi, Najla; Atoui, Abdelfattah; Mahfoudi, Mabrouka; Abdennadher, Moufida; Walha, Lamia Dammak; Ben Ismail, Sana; Ben Abdallah, Olfa; Khammeri, Yosra; Pagano, Marc; Hamza, Asma; Hassen, Malika Bel			Dinoflagellates encystment with emphasis on blooms in Boughrara Lagoon (South-Western Mediterranean): Combined effects of trace metal concentration and environmental context	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Trace metals; Sediment characteristics; Resting cysts; Vegetative cells; Hydrodynamics	RECENT MARINE-SEDIMENTS; SURFACE SEDIMENTS; CYST ASSEMBLAGES; RESTING CYSTS; DISTRIBUTION PATTERNS; KARENIA-SELLIFORMIS; GENUS ALEXANDRIUM; HEAVY-METALS; YELLOW SEA; IZMIR BAY	Resting cysts (RCs), vegetative cell abundance, sediment characteristics, nutrient and trace metal concentrations were investigated in fifteen stations at Boughrara Lagoon during October and November 2016. Twelve morphotypes of RC were recorded. The sampling sites showed a similar cyst assemblage trend but differed in total cyst abundance. The cysts of heterotrophic dinoflagellates dominated over the cysts of autotrophic dinoflagellates throughout the study area and were correlated to the abundance of Bacillariophyceae explained by a likely trophic relationship. The abundance of cysts was positively correlated to phosphorus concentrations measured in the sediment. As well, cysts of Polykrikos kofoidii and Scrippsiella trochoidea were significantly correlated to nitrogen concentrations in water column. The trace metal concentrations did not show any effect on cyst abundances in most cases, except for Cr on mixotrophic dinoflagellates, suggesting that metal contamination is not determinant in the encystment of dinoflagellates. Autotrophic dinoflagellates cyst abundance was dependent on sediment characteristics with the highest densities being recorded in muddy sediments. The hydrodynamics of the lagoon, characterized by a weak water circulation and a low water renewal in the South-Western zone, was considered among the environmental factors most affecting RC distribution. The dominance of potentially toxic species cysts highlights the necessity of monitoring these forms suspected to constitute the precursor of toxic blooms in this area.	[Keskes, Fatma Abdmouleh; Mahfoudi, Mabrouka; Abdennadher, Moufida; Walha, Lamia Dammak; Ben Ismail, Sana; Ben Abdallah, Olfa; Khammeri, Yosra; Pagano, Marc; Hamza, Asma; Hassen, Malika Bel] Inst Natl Sci & Technol Mer Salammbo, 28 Rue 2 Mars 1934, Salammbo 2025, Tunisia; [Keskes, Fatma Abdmouleh; Walha, Lamia Dammak] Univ Sfax, Fac Sci Sfax, Route Soukra Km 3-5,BP 802, Sfax 3000, Tunisia; [Ayadi, Najla] Natl Sch Engineers Sfax, Lab Environm Engn & Eco Technol, Route Soukra Km 4-5 BP W, Sfax 3038, Tunisia; [Atoui, Abdelfattah] Minist Equipernent Habitat & Amenagement Terr, DHU, Rue Hadi Chaker Sakiet Ezzit, Sfax 3021, Tunisia; [Pagano, Marc] Aix Marseille Univ, Univ Toulon, Mediterranean Inst Oceanog, CNRS,IRD,MIO UM 110, F-13288 Marseille, France	Institut National des Sciences et Technologies de la Mer; Universite de Sfax; Faculty of Sciences Sfax; Universite de Sfax; Ecole Nationale dIngenieurs de Sfax (ENIS); Institut de Recherche pour le Developpement (IRD); Centre National de la Recherche Scientifique (CNRS); Aix-Marseille Universite	Keskes, FA (通讯作者)，Inst Natl Sci & Technol Mer Salammbo, 28 Rue 2 Mars 1934, Salammbo 2025, Tunisia.	abdmouleh.fatma@gmail.com	Ben abdallahAbdallah, Olfa/AFF-4343-2022; Ismail, Sana/C-2342-2016	Abdmouleh Keskes, fatma/0000-0001-8993-8182				Abdenadher M, 2012, ESTUAR COAST SHELF S, V106, P102, DOI 10.1016/j.ecss.2012.04.029; Abu-Zied RH, 2013, MAR MICROPALEONTOL, V103, P51, DOI 10.1016/j.marmicro.2013.07.005; Accoroni S, 2014, HARMFUL ALGAE, V34, P7, DOI 10.1016/j.hal.2014.02.003; Anderson DM, 2005, DEEP-SEA RES PT II, V52, P2522, DOI 10.1016/j.dsr2.2005.06.014; [Anonymous], 2002, MEDITERR MAR SCI; APHA, 1992, STANDARD METHODS EXA, V22; Atoui A., 2017, THESIS ENIT, P107; Ayadi N, 2016, ENVIRON SCI POLLUT R, V23, P6414, DOI 10.1007/s11356-015-5872-x; Ayadi N, 2015, ARAB J GEOSCI, V8, P1755, DOI 10.1007/s12517-014-1291-4; Ayari M., 2008, 10 JOURN NA GEN COT, P657, DOI [10.5150/jngcgc.2008.062-A., DOI 10.5150/JNGCGC.2008.062-A]; Aydin H, 2015, MAR POLLUT BULL, V94, P144, DOI 10.1016/j.marpolbul.2015.02.038; 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Coast. Shelf Sci.	MAY 31	2020	237								106648	10.1016/j.ecss.2020.106648	http://dx.doi.org/10.1016/j.ecss.2020.106648			13	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	LG2CX					2025-03-11	WOS:000527916600004
J	Olsen, RO; Thuestad, G; Hoell, IA				Olsen, Ranveig Ottoey; Thuestad, Gunnar; Hoell, Ingunn Alne			Effects on inactivation of<i>Tetraselmis suecica</i>following treatment by KBAL: a UV-based ballast water treatment system with an in-line vacuum drop	JOURNAL OF MARINE SCIENCE AND TECHNOLOGY			English	Article						Ballast water; KBAL; Pressure; vacuum; UV; Tetraselmis suecica	HIGH-PRESSURE HOMOGENIZATION; ULTRAVIOLET DISINFECTION; DINOFLAGELLATE CYSTS; MARINE-PHYTOPLANKTON; TETRASELMIS-SUECICA; IRRADIATION; BACTERIA; EVALUATE; VALIDATION; MICROALGAE	The transfer of non-native, possibly invasive species in ship's ballast water is of global concern, and the International Maritime Organization and U.S. Coast Guard have adopted standards to minimize the environmental footprint caused by the maritime industry. In this study, seawater spiked with the phytoplankterTetraselmis suecica,was treated with Knutsen Ballast Water Treatment Technology (KBAL), combining UV irradiation with an in-line vacuum drop. The test water was subsequently incubated in dark tanks, simulating what happens onboard a ship, where ballast water is treated at intake, stored in dark ballast tanks during the voyage, and then treated at discharge. Our results of the test water treated with KBAL and stored 5 days in the dark showed < 10 viableT. suecicacells ml(-1)when assessing reproduction and > 10 living cells ml(-1)when assessing metabolism. This highlights the challenge UV-based BWTS can encounter when meeting testing regimes assessing different characteristics of life. By comparing the effects caused by KBAL treatment with effects caused by UV irradiation only, we demonstrated that the pressure/vacuum technology seems to improve the disinfection effect. In addition, our investigations point out possible challenges with in situ conditions getting representative ballast water samples.	[Olsen, Ranveig Ottoey; Thuestad, Gunnar; Hoell, Ingunn Alne] Western Norway Univ Appl Sci, Bjoernsonsgt 45, N-5528 Haugesund, Norway	Western Norway University of Applied Sciences	Olsen, RO (通讯作者)，Western Norway Univ Appl Sci, Bjoernsonsgt 45, N-5528 Haugesund, Norway.	ranveig.olsen@hvl.no	Hoell, Ingunn/I-3744-2018		Western Norway University Of Applied Sciences; Norwegian Research Council [208653]; Knutsen OAS Shipping AS; VRI Rogaland; UH-nett Vest; Solstad Shipping; TeknoVest	Western Norway University Of Applied Sciences; Norwegian Research Council(Research Council of Norway); Knutsen OAS Shipping AS; VRI Rogaland; UH-nett Vest; Solstad Shipping; TeknoVest	Open Access funding provided by Western Norway University Of Applied Sciences. This research was funded by the Norwegian Research Council (project no. 208653) and Knutsen OAS Shipping AS, and supported by Western Norway University of Applied Sciences, VRI Rogaland, UH-nett Vest, Solstad Shipping and TeknoVest. We thank Per Lothe and Bjorn Joakim Ramsen (Knutsen OAS Shipping AS, Haugesund, Norway) for helpful discussions and assistance at the KBAL test rig.	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J	Li, Z; Matsuoka, K; Shin, HH				Li, Zhun; Matsuoka, Kazumi; Shin, Hyeon Ho			Revision of the life cycle of the harmful dinoflagellate <i>Margalefidinium polykrikoides</i> (Gymnodiniales, Dinophyceae) based on isolates from Korean coastal waters	JOURNAL OF APPLIED PHYCOLOGY			English	Article						Cochlodinium polykrikoides; Resting cyst; Asexual reproduction; Planozygote; Mating behavior	ALEXANDRIUM-TAYLORI DINOPHYCEAE; COCHLODINIUM-POLYKRIKOIDES; SEXUAL REPRODUCTION; PHYLOGENETIC-RELATIONSHIPS; RESTING CYSTS; HISTORY; GONYAULACALES; BLOOMS; GERMINATION; ENCYSTMENT	Although the life cycle of Margalefidinium polykrikoides, formerly called Cochlodinium polykrikoides, has been described previously, the descriptions on asexual and sexual phases of this species collected from Korean coastal waters are strange and still unclear. We collected the resting cysts of M. polykrikoides from surface sediments and re-examined the germination process, and asexual and sexual life stages, and the mating behavior of the vegetative cells using a microscope equipped with high-resolution time-lapse digital camera. The resting cyst of M. polykrikoides had a distinct germination process; before germination, a mature cell in shape was visible within the resting cyst body, and the cell quickly emerged from the resting cyst. The asexual reproduction and cell chain formation of M. polykrikoides were generated in a slightly oblique direction at the epicone of cell and the chain-forming cells of M. polykrikoides could form the chain-forming temporary cysts without asexual or sexual reproduction. The planozygote produced by gamete fusion of M. polykrikoides may not necessarily develop to resting cysts but instead may divide into vegetative cells occasionally. In this phase, the armored cell, which was previously recorded by Kim et al. (2007), was not observed. The sexuality of M. polykrikoides had a homothallic mating behavior.	[Li, Zhun] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures KCTC, Biol Resource Ctr, 181 Ipsingil, Jeongeup 56212, South Korea; [Matsuoka, Kazumi] Osaka Inst Technol, Asahi Ku, 5-16-1 Omiya, Osaka 5358585, Japan; [Matsuoka, Kazumi] Nagasaki Univ, Inst East China Sea Res, 1551-7 Taira Machi, Nagasaki 8502213, Japan; [Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea	Korea Research Institute of Bioscience & Biotechnology (KRIBB); Osaka Institute of Technology; Nagasaki University; Korea Institute of Ocean Science & Technology (KIOST)	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.	shh961121@kiost.ac.kr	LI, ZHUN/GLT-3478-2022	LI, ZHUN/0000-0001-8961-9966; Shin, Hyeon Ho/0000-0002-9711-6717; Matsuoka, Kazumi/0000-0001-6015-558X	Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF) [20170431]; Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program; Korea Institute of Ocean Science and Technology (KIOST) project [PE99821]	Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF)(Korea Institute of Marine Science & Technology Promotion (KIMST)Ministry of Oceans & Fisheries (MOF), Republic of Korea); Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program; Korea Institute of Ocean Science and Technology (KIOST) project	This work was supported by grants from the Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) (No. 20170431), the Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program, and the Korea Institute of Ocean Science and Technology (KIOST) project (PE99821).	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Appl. Phycol.	JUN	2020	32	3					1863	1873		10.1007/s10811-020-02125-0	http://dx.doi.org/10.1007/s10811-020-02125-0		MAY 2020	11	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	ME0MX					2025-03-11	WOS:000534879000002
J	Hu, XJ; Su, HC; Xu, Y; Xu, WJ; Li, SS; Huang, XS; Cao, YC; Wen, GL				Hu, Xiaojuan; Su, Haochang; Xu, Yu; Xu, Wujie; Li, Shasha; Huang, Xiaoshuai; Cao, Yucheng; Wen, Guoliang			Algicidal properties of fermentation products from <i>Bacillus cereus</i> strain JZBC1 dissolving dominant dinoflagellate species <i>Scrippsiella trochoidea</i>, <i>Prorocentrum micans</i>, and <i>Peridinium umbonatum</i>	BIOLOGIA			English	Article						Algicidal bacteria; Aquaculture pond; Fermentation; Harmful dinoflagellates	HARMFUL ALGAL BLOOMS; BACTERIUM; GROWTH; EUTROPHICATION; MICROALGAE; NUTRIENTS; DEATH	Intensive and semi-intensive aquaculture systems typically produce high loads of nutrients in their discharge, potentially leading to the development and persistence of harmful algal blooms (HABs). Algicidal bacteria, which inhibit algal growth or kill algal cells, offer a promising biocontrol strategy for reducing HAB. The strain JZBC1, which displays strong algicidal activity against the HAB species Scrippsiella trochoidea, was previously isolated from a dinoflagellate bloom area and identified as Bacillus cereus. In this study, strain JZBC1 was fermented in 2 L and 50 L systems, and then, algicidal properties of JZBC1 fermentation products on the harmful dinoflagellate species S. trochoidea, Prorocentrum micans, and Peridinium umbonatum were examined. Bacterial concentrations of strain JZBC1 reached 6.23 x 10(9) and 4.47 x 10(9) CFU/mL in 2 L and 50 L cultures, respectively, and thus effectively expanded during fermentation. Strain JZBC1 showed substantial algicidal activities and a wide algicidal range toward harmful dinoflagellates. Vegetative JZBC1 cells exhibited the best inhibitory and algicidal effects in 1 day. Strain JZBC1 can be formulated into a powder, and the spores can be activated before field application to increase their efficacy. These findings will facilitate large-scale fermentation production and application of Bacillus strain JZBC1 for controlling dinoflagellate blooms in aquaculture ponds.	[Hu, Xiaojuan; Su, Haochang; Xu, Yu; Xu, Wujie; Li, Shasha; Huang, Xiaoshuai; Cao, Yucheng; Wen, Guoliang] Chinese Acad Fishery Sci, Key Lab South China Sea Fishery Resources Exploit, Minist Agr & Rural Affairs, Guangzhou 510300, Peoples R China; [Hu, Xiaojuan; Su, Haochang; Xu, Yu; Xu, Wujie; Li, Shasha; Huang, Xiaoshuai; Cao, Yucheng; Wen, Guoliang] Chinese Acad Fishery Sci, Guangdong Provincal Key Lab Fishery Ecol & Enviro, South China Sea Fisheries Res Inst, Guangzhou 510300, Peoples R China; [Hu, Xiaojuan; Su, Haochang; Xu, Yu; Xu, Wujie; Cao, Yucheng] Chinese Acad Fishery Sci, South China Sea Fisheries Res Inst, Shenzhen Base, Shenzhen 518121, Peoples R China	Chinese Academy of Fishery Sciences; South China Sea Fisheries Research Institute, CAFS; Ministry of Agriculture & Rural Affairs; Chinese Academy of Fishery Sciences; South China Sea Fisheries Research Institute, CAFS; Chinese Academy of Fishery Sciences	Cao, YC; Wen, GL (通讯作者)，Chinese Acad Fishery Sci, Key Lab South China Sea Fishery Resources Exploit, Minist Agr & Rural Affairs, Guangzhou 510300, Peoples R China.; Cao, YC; Wen, GL (通讯作者)，Chinese Acad Fishery Sci, Guangdong Provincal Key Lab Fishery Ecol & Enviro, South China Sea Fisheries Res Inst, Guangzhou 510300, Peoples R China.; Cao, YC (通讯作者)，Chinese Acad Fishery Sci, South China Sea Fisheries Res Inst, Shenzhen Base, Shenzhen 518121, Peoples R China.	cyc_715@163.com; wgl610406@163.com	Li, Shasha/AAT-3255-2021; Xu, Wujie/V-3666-2017	Xu, Wujie/0000-0002-9448-0513	National Key R&D Program of China [2019YFD0900400]; program of China Agriculture Research System [CARS-48]; Central Public-Interest Scientific Institution Basal Research Fund, South China Sea Fisheries Research Institute, CAFS [2019TS06]; Guangdong Provincial Special Fund For Modern Agriculture Industry Technology Innovation Teams [2019KJ149]; Guangdong Special Fund for Economic Development Project (Modern Fisheries Development) [2019B12]	National Key R&D Program of China; program of China Agriculture Research System; Central Public-Interest Scientific Institution Basal Research Fund, South China Sea Fisheries Research Institute, CAFS; Guangdong Provincial Special Fund For Modern Agriculture Industry Technology Innovation Teams; Guangdong Special Fund for Economic Development Project (Modern Fisheries Development)	This study was funded by the National Key R&D Program of China (2019YFD0900400); program of China Agriculture Research System (CARS-48); Central Public-Interest Scientific Institution Basal Research Fund, South China Sea Fisheries Research Institute, CAFS (2019TS06); Guangdong Provincial Special Fund For Modern Agriculture Industry Technology Innovation Teams (2019KJ149); and Guangdong Special Fund for Economic Development Project (Modern Fisheries Development) (2019B12).	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J	Draredja, MA; Frihi, H; Boualleg, C; Abadie, E; Laabir, M				Draredja, Mohamed Anis; Frihi, Hocine; Boualleg, Chahinaise; Abadie, Eric; Laabir, Mohamed			Distribution of dinoflagellate cyst assemblages in recent sediments from a southern Mediterranean lagoon (Mellah, Algeria) with emphasis on toxic species	ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH			English	Article						Dinoflagellate cysts; Environmental factors; Diversity; Toxic species; Spatial distribution; Mellah lagoon	NORTHWESTERN INDIAN-OCEAN; HARMFUL ALGAL BLOOMS; SURFACE SEDIMENTS; ALEXANDRIUM-CATENELLA; GENUS ALEXANDRIUM; RESTING CYSTS; COASTAL WATERS; COCHLODINIUM-POLYKRIKOIDES; SPATIAL-DISTRIBUTION; BIZERTE LAGOON	This is the first study on the dinoflagellate cysts in Algerian waters and in Mellah Lagoon (South Western Mediterranean), located within a protected reserve. In total, 42 species of dinocysts belonging to 7 orders, 12 families and 23 genera, were identified in the 26 superficial sediment samples from Mellah Lagoon. The distribution of dinocysts in the sediment of this lagoon is heterogeneous. Indeed, their abundance oscillates between 1 and 315 cysts g(-1) dry sediment (DS). Cyst morphotype assemblages were dominated by a few numbers of species: Alexandrium minutum (15.87%), Gonyaulax verior (9.81%), Protoperidinium spp. (7.74%), Alexandrium affine (7.05%), Scrippsiella trochoidea (6.67%), and Alexandrium pseudogonyaulax (6.19%). There is a positive correlation between the density of cysts and the depth (r = 0.61; p < 0.05), organic matter (r = 0.70; p < 0.05), water content (r = 0.71; p < 0.05), and the fine fraction of sediment (r = 0.74; p < 0.05). Surprisingly, although the Mellah Lagoon is almost semi-closed, it holds an important specific richness in dinocysts (42 species) higher than others observed in Mediterranean lagoons. However, cyst abundances are low compared to other lagoons in the Mediterranean Sea. Finally, the presence of dinocysts of Alexandrium catenella/tamarense, A. minutum, and Gymnodinium catenatum associated to paralytic shellfish toxins, A. pseudogonyaulax which produces goniodomin A, also Protoceratium reticulatum and Gonyaulax spinifera complex which produce yessotoxins, needs to implement a monitoring program to prevent a potential human intoxication due to the consumption of contaminated sea products by these potent neurotoxins.	[Draredja, Mohamed Anis; Boualleg, Chahinaise] MC Messaadia Univ, Lab Aquat & Terr Ecosyst, Fac Sci Nat & Life, PB 1553, Souk Ahras 41000, Algeria; [Draredja, Mohamed Anis; Frihi, Hocine] Badji Mokhtar Univ, Fac Sci, Marine Bioressources Lab, PB 12, Annaba 23000, Algeria; [Draredja, Mohamed Anis; Laabir, Mohamed] Univ Montpellier, IRD, CNRS, IFREMER,MARBEC, Montpellier 34095 5, France	Universite Badji Mokhtar - Annaba; Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Developpement (IRD); Ifremer; Universite de Montpellier	Draredja, MA (通讯作者)，MC Messaadia Univ, Lab Aquat & Terr Ecosyst, Fac Sci Nat & Life, PB 1553, Souk Ahras 41000, Algeria.; Draredja, MA (通讯作者)，Badji Mokhtar Univ, Fac Sci, Marine Bioressources Lab, PB 12, Annaba 23000, Algeria.; Draredja, MA (通讯作者)，Univ Montpellier, IRD, CNRS, IFREMER,MARBEC, Montpellier 34095 5, France.	draredjanis@gmail.com	Hocine, FREHI/R-8856-2016	ABADIE, Eric/0000-0001-9431-2010; FRIHI, Hocine/0000-0001-8104-2875; Draredja, Mohamed Anis/0000-0002-2694-7521	IRD (French Institute for Research and Development); LAGUNOTOX research project - TOTAL Foundation; Algerian Ministry of Higher Education and Scientific Research	IRD (French Institute for Research and Development); LAGUNOTOX research project - TOTAL Foundation; Algerian Ministry of Higher Education and Scientific Research(Ministry of Higher Education & Scientific Research, Algeria)	This work was supported by the program funded by IRD (French Institute for Research and Development) and from LAGUNOTOX research project funded by TOTAL Foundation. The Algerian Ministry of Higher Education and Scientific Research provided funding for Mohamed Anis Draredja PhD.	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J	Liu, L; Wang, ZH; Lu, SH				Liu, Lei; Wang, Zhaohui; Lu, Songhui			Diversity and geographical distribution of resting stages of eukaryotic algae in the surface sediments from the southern Chinese coastline based on metabarcoding partial 18S rDNA sequences	MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE			English	Article						dinoflagellate cysts; eukaryotic algae; high-throughput sequencing; maine sediment; South China Sea; spores	SPECIES COMPLEX DINOPHYCEAE; DINOFLAGELLATE CYSTS; DAYA BAY; PHYTOPLANKTON DYNAMICS; FEEDING MECHANISM; COASTAL WATERS; WESTERN KOREA; N. SP; MARINE; SEA	Surface sediment samples were collected from sixteen sites of the southern Chinese coastline in this study. Diversity of eukaryotic microalgae was examined using high-throughput sequencing of 18S rDNA to understand the community structure and geological distribution of microalgal resting stages. A total of 218 operational taxonomic units (OTUs) were detected for eukaryotic algae, and only 75 OTUs (34.40%) were detected into species level. The algal communities were composed of sixty-four genera belonged to twelve classes of four phyla. Dinoflagellates were the most abundant and diversified group, which accounted for the average of 56.26% and 53.70% DNA reads and OTUs, respectively. Dinoflagellates were dominated by Protoperidinium, Euduboscquella, Amylax, and Paragymnodinium. Chaetoceros, Thalassiosira, and Skeletonema were abundant in diatoms, while Pedospumella and Paraphysomonas in Chrysophyceae were the most abundant genera due to their massive occurrence in some particular sites. The high abundance of Protoperidinium sequences suggested the high nutrient levels in the southern Chinese coastline. Nineteen of the detected OTUs were assigned to harmful and/or bloom-forming microalgae. The wide occurrence of the toxic dinoflagellate Azadinium poporum and high abundance of Alexandrium pacificum in some particular sites suggested the potential risk of human poisoning.	[Liu, Lei; Wang, Zhaohui; Lu, Songhui] Jinan Univ, Coll Life Sci & Technol, Guangzhou, Peoples R China	Jinan University	Wang, ZH (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Dept Ecol, Guangzhou 510632, Peoples R China.	twzh@jnu.edu.cn			Science & Technology Basic Resources Investigation Program of China [2018FY100200]	Science & Technology Basic Resources Investigation Program of China	Science & Technology Basic Resources Investigation Program of China, Grant/Award Number: 2018FY100200	Ajani P, 2001, P LINN SOC N S W, V123, P1; Anderson DM, 1996, TOXICON, V34, P579, DOI 10.1016/0041-0101(95)00158-1; Anderson DM, 2012, ANNU REV MAR SCI, V4, P143, DOI 10.1146/annurev-marine-120308-081121; Bergesch M, 2008, BOT MAR, V51, P35, DOI 10.1515/BOT.2008.003; Bråte J, 2010, ISME J, V4, P1144, DOI 10.1038/ismej.2010.39; Caporaso JG, 2010, NAT METHODS, V7, P335, DOI 10.1038/nmeth.f.303; Cavalier-Smith T, 2009, PROTIST, V160, P452, DOI 10.1016/j.protis.2009.03.003; Chariton AA, 2015, ENVIRON POLLUT, V203, P165, DOI 10.1016/j.envpol.2015.03.047; Dai XF, 2014, DEEP-SEA RES PT II, V101, P237, DOI 10.1016/j.dsr2.2013.01.015; Dale B., 1983, P69; Dale B, 2009, J SEA RES, V61, P103, DOI 10.1016/j.seares.2008.06.007; de Vargas C, 2015, SCIENCE, V348, DOI 10.1126/science.1261605; De Vernal A, 1997, GEOBIOS-LYON, V30, P905, DOI 10.1016/S0016-6995(97)80215-X; Decelle J, 2015, MOL ECOL RESOUR, V15, P1435, DOI 10.1111/1755-0998.12401; Deeds JR, 2006, AFR J MAR SCI, V28, P421, DOI 10.2989/18142320609504190; Dzhembekova N, 2018, BIOTECHNOL BIOTEC EQ, V32, P1507, DOI 10.1080/13102818.2018.1532816; Edgar RC, 2013, NAT METHODS, V10, P996, DOI [10.1038/NMETH.2604, 10.1038/nmeth.2604]; Eland LE, 2012, WATER RES, V46, P5355, DOI 10.1016/j.watres.2012.07.023; Findenig BM, 2010, J PHYCOL, V46, P868, DOI 10.1111/j.1529-8817.2010.00892.x; Finlay BJ, 1999, PROTIST, V150, P419, DOI 10.1016/S1434-4610(99)70042-8; Forster D, 2016, FEMS MICROBIOL ECOL, V92, DOI 10.1093/femsec/fiw120; Gao YC, 2019, MAR BIODIVERS, V49, P769, DOI 10.1007/s12526-018-0850-4; Gao YC, 2017, PEERJ, V5, DOI 10.7717/peerj.3224; Garcés E, 2006, J PHYCOL, V42, P1096, DOI 10.1111/j.1529-8817.2006.00270.x; Genovesi B, 2009, J PLANKTON RES, V31, P1209, DOI 10.1093/plankt/fbp066; Gilbert PM, 2017, MAR POLLUT BULL, V124, P591, DOI 10.1016/j.marpolbul.2017.04.027; Gu HF, 2013, HARMFUL ALGAE, V27, P68, DOI 10.1016/j.hal.2013.05.008; Guiry M D., 2019, AlgaeBase (World-wide electronic publication); Harada A, 2007, PROTIST, V158, P337, DOI 10.1016/j.protis.2007.03.005; Head M.J., 1996, Palynology: Principles and Applications, P1197; Heiri O, 2001, J PALEOLIMNOL, V25, P101, DOI 10.1023/A:1008119611481; Heisler J, 2008, HARMFUL ALGAE, V8, P3, DOI 10.1016/j.hal.2008.08.006; John U, 2014, PROTIST, V165, P779, DOI 10.1016/j.protis.2014.10.001; Jung JH, 2016, J EUKARYOT MICROBIOL, V63, P3, DOI 10.1111/jeu.12231; Kang NS, 2013, HARMFUL ALGAE, V30, pS114, DOI 10.1016/j.hal.2013.10.011; Kang NS, 2011, J EUKARYOT MICROBIOL, V58, P152, DOI 10.1111/j.1550-7408.2011.00531.x; Kang NS, 2010, J EUKARYOT MICROBIOL, V57, P121, DOI 10.1111/j.1550-7408.2009.00462.x; Kataoka T, 2017, FEMS MICROBIOL ECOL, V93, DOI 10.1093/femsec/fiw229; Kociolek J. 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Ecol.-Evol. Persp.	JUN	2020	41	3							e12585	10.1111/maec.12585	http://dx.doi.org/10.1111/maec.12585		APR 2020	17	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	MB4OZ					2025-03-11	WOS:000529110600001
J	Berdieva, M; Kalinina, V; Lomert, E; Knyazev, N; Skarlato, S				Berdieva, Mariia; Kalinina, Vera; Lomert, Ekaterina; Knyazev, Nikolay; Skarlato, Sergei			Life Cycle Stages and Evidence of Sexual Reproduction in the Marine Dinoflagellate <i>Prorocentrum minimum</i> (Dinophyceae, Prorocentrales)<SUP>1</SUP>	JOURNAL OF PHYCOLOGY			English	Article						asynchronous division; desmoschisis; dinoflagellate; life cycle; planozygote; Prorocentrum minimum; sexual reproduction	RED-TIDE DINOFLAGELLATE; CELL-DIVISION; BLOOM; DINOPHYCEAE; MICANS; MIXOTROPHY; DIVERSITY; GROWTH; CYSTS	Prorocentrum minimum is a potentially toxic marine dinoflagellate that often forms massive blooms in estuarine and coastal sea waters. In this study, the life cycle of P. minimum was investigated and sexual reproduction in culture was described for the first time. Morphology of the mitotic stages was revised and several distinguishing features from sexual steps were described. The sexual reproductive stages were observed in the stationary culture and compared with a well-studied closely related species, Prorocentrum micans. Prorocentrum minimum has a haplontic life cycle and homothallic sexual process. The gametes were isogamous and morphologically indistinguishable from the vegetative cells. Unlike P. micans, P. minimum isogametes fused, but did not conjugate, partially reorganizing their cell coverings. Newly formed planozygotes were distinguished by their irregular shape and a large asymmetrically located nucleus. No long-term resting cyst stages (hypnozygotes) were documented. The late planozygotes underwent meiosis and formed tetrads of cells. The second meiotic division could be delayed or arrested in one of the daughter nuclei leading to formation of trinucleate cells with three pairs of flagella. So, similar to P. micans, P. minimum may have two possible scenarios of sexual division: (a) formation of a four-cell stage through two successive divisions or (b) asynchronous divisions of the zygote. Changes in the DNA content were confirmed by quantitative image cytometry.	[Berdieva, Mariia; Kalinina, Vera; Lomert, Ekaterina; Knyazev, Nikolay; Skarlato, Sergei] Russian Acad Sci, Inst Cytol, Tikhoretsky Ave 4, St Petersburg 194064, Russia	Russian Academy of Sciences; St. Petersburg Scientific Centre of the Russian Academy of Sciences; Institute of Cytology RAS	Kalinina, V (通讯作者)，Russian Acad Sci, Inst Cytol, Tikhoretsky Ave 4, St Petersburg 194064, Russia.	verakamakalinina@gmail.com	Skarlato, Sergei/W-4663-2017; Lomert, Ekaterina/AAE-1567-2019; Berdieva, Mariia/V-6811-2018; Kalinina, Vera/V-2408-2018	Berdieva, Mariia/0000-0002-5467-2713; Lomert, Ekaterina/0000-0003-3732-0553; Kalinina, Vera/0000-0003-2053-5101; Skarlato, Sergei/0000-0001-7579-7227	Russian Foundation for Basic Research [18-34-00907]; Budgetary Program at the Institute of Cytology RAS	Russian Foundation for Basic Research(Russian Foundation for Basic Research (RFBR)Spanish Government); Budgetary Program at the Institute of Cytology RAS(Russian Academy of Sciences)	The authors are grateful to Dr. I.V. Telesh for the critical comments that allowed to improve this manuscript significantly. This research was funded in parts by Russian Foundation for Basic Research (project 18-34-00907; M.B. and V.K.; all microscopic studies, sample preparation for flow and quantitative image cytometry) and the Budgetary Program at the Institute of Cytology RAS (N.K. and S.S.; flow cytometry).	Berdieva M A, 2016, Tsitologiia, V58, P792; Berdieva M, 2018, PHYCOL RES, V66, P127, DOI 10.1111/pre.12214; BHAUD Y, 1988, J CELL SCI, V89, P197; Bravo Isabel, 2014, Microorganisms, V2, P11; BURSA ADAM, 1959, CANADIAN JOUR BOT, V37, P1; Ellegaard M, 2013, MICROPALEAEONTOLOGIC, P249; Faust M. 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A., 1973, BRIT PHYCOL J, V8, P105, DOI DOI 10.1080/00071617300650141	51	11	13	4	32	WILEY	HOBOKEN	111 RIVER ST, HOBOKEN 07030-5774, NJ USA	0022-3646	1529-8817		J PHYCOL	J. Phycol.	AUG	2020	56	4					941	952		10.1111/jpy.12989	http://dx.doi.org/10.1111/jpy.12989		APR 2020	12	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	MV5CR	32170721				2025-03-11	WOS:000525080500001
J	Casabianca, S; Capellacci, S; Ricci, F; Andreoni, F; Russo, T; Scardi, M; Penna, A				Casabianca, Silvia; Capellacci, Samuela; Ricci, Fabio; Andreoni, Francesca; Russo, Tommaso; Scardi, Michele; Penna, Antonella			Structure and environmental drivers of phytoplanktonic resting stage assemblages in the central Mediterranean Sea	MARINE ECOLOGY PROGRESS SERIES			English	Article						Resting stages; Assemblages; Structure; Sea surface temperature; Depth; Mediterranean Sea; Phytoplankton	DINOFLAGELLATE CYST PRODUCTION; SURFACE SEDIMENTS; PLANKTONIC DIATOM; LIFE-CYCLE; SEED BANKS; MARINE; COMMUNITY; CELLS; WATER; QUANTIFICATION	Phytoplankton species can produce resting stages that persist in the sediment over long periods and accomplish important ecological functions. With the aim of investigating the phytoplankton assemblage structure in relation to environmental drivers and human pressures, we analyzed resting stages of diatoms and dinoflagellates, including harmful algal bloom taxa, in the surface sediments of 3 Mediterranean regional areas. Abundance of resting stages was determined by molecular quantitative polymerase chain reaction assay. Multivariate data analysis confirmed that the abundance of resting-stage assemblages seemed related to depth. Regional differences in the composition of the resting-stage assemblages were evident and environmental drivers were correlated with those regional differences. Three main groups of samples were defined according to SST and depth thresholds. Samples from the northern and central Adriatic Sea (average SST < 18 degrees C) formed the richest assemblages, both in terms of abundance and species richness, while deep samples from all other basins (depth > 368 m) were poorer and less diverse than those from shallower sites (depth <= 368 m). Resting-stage taxa contributed differently to the 3 groups. Diatom spores and dinoflagellate cysts were the most abundant taxa, but Alexandrium minutum cysts and Ditylum brightwellii spores also accounted for a large share of the overall inter-group compositional distance. The structure of resting-stage assemblages can be regarded as a time- and space-integrated response of a subset of phytoplankton species to environmental conditions, including the physical oceanographic dynamics that favor or prevent sedimentation of resting stages.	[Casabianca, Silvia; Capellacci, Samuela; Ricci, Fabio; Andreoni, Francesca; Penna, Antonella] Univ Urbino, Dept Biomol Sci, I-61029 Urbino, Italy; [Casabianca, Silvia; Capellacci, Samuela; Ricci, Fabio; Russo, Tommaso; Scardi, Michele; Penna, Antonella] Natl Interuniv, CoNISMa, Consortium Marine Sci, I-00196 Rome, Italy; [Russo, Tommaso; Scardi, Michele] Univ Roma Tor Vergata, Dept Biol, I-00133 Rome, Italy; [Penna, Antonella] CNR, Inst Biol Resources & Marine Biotechnol, IRBIM, I-60125 Ancona, Italy	University of Urbino; CoNISMa; University of Rome Tor Vergata; Consiglio Nazionale delle Ricerche (CNR); Istituto per le Risorse Biologiche Biotecnologie Marine (IRBIM-CNR)	Casabianca, S (通讯作者)，Univ Urbino, Dept Biomol Sci, I-61029 Urbino, Italy.; Casabianca, S (通讯作者)，Natl Interuniv, CoNISMa, Consortium Marine Sci, I-00196 Rome, Italy.	silvia.casabianca@uniurb.it	Scardi, Michele/AFL-8936-2022; Francesca, Andreoni/G-7505-2012; Russo, Tommaso/C-6157-2014	Russo, Tommaso/0000-0003-4047-959X	Monitoring Project for the Marine Strategy Framework Directive; National Interuniversity Consortium for Marine Sciences (Consorzio Nazionale Interuniversitario per le Scienze del Mare, CoNISMa)	Monitoring Project for the Marine Strategy Framework Directive; National Interuniversity Consortium for Marine Sciences (Consorzio Nazionale Interuniversitario per le Scienze del Mare, CoNISMa)	This study was funded by the Monitoring Project for the Marine Strategy Framework Directive operated by the Italian National Research Council (Consiglio Nazionale delle Ricerche, CNR) and the National Interuniversity Consortium for Marine Sciences (Consorzio Nazionale Interuniversitario per le Scienze del Mare, CoNISMa). We thank Prof. Cesare Corselli, Prof. Daniela Basso, Dr. Eleonora Valbi, Dr. Valentina Bracchi and Dr. Fabio Marchese for the sampling activity on board the CNR scientific vessel. We thank the reviewers for helping to improve the manuscript.	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Ecol.-Prog. Ser.	APR 2	2020	639						73	89		10.3354/meps13244	http://dx.doi.org/10.3354/meps13244			17	Ecology; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Oceanography	LC5IQ					2025-03-11	WOS:000525359900005
J	Prabhudessai, SS; Rivonker, CU				Prabhudessai, Samiksha S.; Rivonker, C. U.			Distribution of dinoflagellate cysts along the salinity gradient in two tropical estuaries along the West coast of India	MARINE MICROPALEONTOLOGY			English	Article						Dinoflagellate cysts; Gonyaulax spinifera; Tropical estuaries; Salinity gradient; Nitrate	RECENT MARINE-SEDIMENTS; SURFACE SEDIMENTS; EAST-COAST; GONYAULAX-TAMARENSIS; BENTHIC CYSTS; RESTING CYSTS; SEA; ASSEMBLAGES; DINOPHYCEAE; BAY	Dinoflagellate cysts are known to be potential seed banks which have an essential role in providing bloom history and also serve as useful indicators of eutrophication in marine environments. The present study is focused on the surface distribution of dinoflagellate cysts along the salinity gradient in two tropical estuaries, namely Chapora and Sal in Goa along the West coast of India. Surface sediments and water samples were collected monthly from February 2016-March 2017 which included all three seasons (pre-monsoon, monsoon, post-monsoon). A total of sixteen species of dinoflagellate cysts belonging to the order, Gymnodiniales, Gonyaulacales, and Peridiniales were recorded in the surface sediments. Cysts of heterotrophic dinoflagellates dominated the assemblage in both estuaries. Based on Redundancy Analysis (RDA), it was observed that the distribution of the dinoflagellate cysts were influenced by various physico-chemical parameters in both estuaries with salinity and grain size being the main explanatory variable. Nitrate limitation is noted to be a triggering factor for dinoflagellate cyst formation. Also, yessotoxin producer species, such as Gonyaulax spinifera, encountered in both estuaries showed an inverse relationship with nitrate concentration. This suggests that, high nitrate input in these estuaries might lead to excystment of Gonyaulax spinifera eventually leading to harmful blooms under eutrophic conditions.	[Prabhudessai, Samiksha S.; Rivonker, C. U.] Goa Univ, Sch Earth Ocean & Atmospher Sci, Taleigao Plateau 403206, Goa, India	Goa University	Rivonker, CU (通讯作者)，Goa Univ, Sch Earth Ocean & Atmospher Sci, Taleigao Plateau 403206, Goa, India.	curivonker@unigoa.ac.in	Rivonker, Chandrasheker/AAO-3738-2021		Centre for Marine Living Resources and Ecology (CMLRE), Ministry of Earth sciences, Kochi, India [CMLRE/10-MMME/09/2012]; Goa University	Centre for Marine Living Resources and Ecology (CMLRE), Ministry of Earth sciences, Kochi, India; Goa University	The authors are grateful to the Centre for Marine Living Resources and Ecology (CMLRE), Ministry of Earth sciences, Kochi, India for funding a project entitled "HAB-Monitoring (Mangalore to Goa), CMLRE/10-MMME/09/2012". SP is also thankful to Goa University for providing research studentship. Thanks are also due to Shri. Venkat Krishnamurthy, Principal Technical Officer, CSIR-National Institute of Oceanography, Goa for improving the quality of the images.	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Micropaleontol.	APR	2020	156								101852	10.1016/j.marmicro.2020.101852	http://dx.doi.org/10.1016/j.marmicro.2020.101852			9	Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Paleontology	LG4GW					2025-03-11	WOS:000528062400007
J	Su, YL; Zhang, KD; Zhou, Z; Wang, JR; Yang, XH; Tang, J; Li, HF; Lin, SJ				Su, Yilu; Zhang, Kaidian; Zhou, Zhi; Wang, Jierui; Yang, Xiaohong; Tang, Jia; Li, Hongfei; Lin, Senjie			Microplastic exposure represses the growth of endosymbiotic dinoflagellate Cladocopium goreaui in culture through affecting its apoptosis and metabolism	CHEMOSPHERE			English	Article						Microplastic; Symbiodiniaceae; Apoptosis; Assimilation metabolism; Adaptation	POLYSTYRENE MICROPLASTICS; INGESTION; POLLUTION; LEAD	Microplastics are widespread emerging marine pollutants that have been found in the coral reef ecosystem. In the present study, using Cladocopium goreaui as a symbiont representative, we investigated cytological, physiological, and molecular responses of a Symbiodiniaceae species to weeklong microplastic exposure (Polystyrene, diameter 1.0 mu m, 9.0 x 10(9) particles L-1). The density and size of algal cells decreased significantly at 7 d and 6-7 d of microplastic exposure, respectively. Chlorophyll a content increased significantly at 7 d of exposure, whereas Fv/Fm did not change significantly during the entire exposure period. We observed significant increases in superoxide dismutase activity and caspase3 activation level, significant decrease in glutathione S-transferase activity, but no change in catalase activity during the whole exposure period. Transcriptomic analysis revealed 191 significantly upregulated and 71 significantly downregulated genes at 7 d after microplastic exposure. Fifteen GO terms were overrepresented for these significantly upregulated genes, which were grouped into four categories including transmembrane ion transport, substrate-specific transmembrane transporter activity, calcium ion binding, and calcium-dependent cysteine-type endopeptidase activity. Thirteen of the significantly upregulated genes encode metal ion transporter and ammonium transporter, and five light-harvesting protein genes were among the significantly downregulated genes. These results demonstrate that microplastics can act as an exogenous stressor, suppress detoxification activity, nutrient uptake, and photosynthesis, elevate oxidative stress, and raise the apoptosis level through upregulating ion transport and apoptotic enzymes to repress the growth of C. goreaui. These effects have implications in negative impacts of microplastics on coral-Symbiodiniaceae symbiosis that involves C. goreaui. (C) 2019 Elsevier Ltd. All rights reserved.	[Su, Yilu; Zhou, Zhi; Tang, Jia] Hainan Univ, State Key Lab Marine Resource Utilizat South Chin, Haikou, Hainan, Peoples R China; [Zhang, Kaidian; Wang, Jierui; Yang, Xiaohong; Li, Hongfei] Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen, Fujian, Peoples R China; [Zhang, Kaidian; Zhou, Zhi; Lin, Senjie] Univ Connecticut, Dept Marine Sci, Groton, CT 06340 USA	Hainan University; Xiamen University; University of Connecticut	Zhou, Z (通讯作者)，Hainan Univ, State Key Lab Marine Resource Utilizat South Chin, Haikou, Hainan, Peoples R China.; Lin, SJ (通讯作者)，Univ Connecticut, Dept Marine Sci, Groton, CT 06340 USA.	zhouzhi@hainanu.edu.cn; senjie.lin@uconn.edu	Lin, Senjie/A-7466-2011	Lin, Senjie/0000-0001-8831-6111	China Scholarship Council [201708460042]; National Key R&D Program of China [2018YFC1406504]; National Natural Science Foundation of China [31772460, 31661143029]; Scientific Research Foundation of Hainan University [kyqd1554]	China Scholarship Council(China Scholarship Council); National Key R&D Program of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Scientific Research Foundation of Hainan University	The authors were grateful to all of the laboratory members for their continuous technical advice and helpful discussions. Z.Z. gratefully acknowledges the financial support from China Scholarship Council (201708460042) to enable his visit to the University of Connecticut. This research was supported by the National Key R&D Program of China (Grant 2018YFC1406504), the National Natural Science Foundation of China (Grants 31772460 and 31661143029) and the Scientific Research Foundation of Hainan University (kyqd1554).	Avio CG, 2017, MAR ENVIRON RES, V128, P2, DOI 10.1016/j.marenvres.2016.05.012; Canniff PM, 2018, SCI TOTAL ENVIRON, V633, P500, DOI 10.1016/j.scitotenv.2018.03.176; Casabianca S, 2020, CHEMOSPHERE, V238, DOI 10.1016/j.chemosphere.2019.124560; Cole M, 2013, ENVIRON SCI TECHNOL, V47, P6646, DOI 10.1021/es400663f; Cooper TF, 2011, PLOS ONE, V6, DOI 10.1371/journal.pone.0025536; EJ A. 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J	Zhang, W; Li, Z; Mertens, KN; Derrien, A; Pospelova, V; Carbonell-Moore, MC; Bagheri, S; Matsuoka, K; Shin, HH; Gu, HF				Zhang, Wei; Li, Zhun; Mertens, Kenneth Neil; Derrien, Amelie; Pospelova, Vera; Carbonell-Moore, M. Consuelo; Bagheri, Siamak; Matsuoka, Kazumi; Shin, Hyeon Ho; Gu, Haifeng			Reclassification of Gonyaulax verior (Gonyaulacales, Dinophyceae) as <i>Sourniaea diacantha gen. et comb. nov.</i>	PHYCOLOGIA			English	Article						Amylax diacantha; Cysts; Dinoflagellate; Gonyaulax longispina; Molecular phylogeny	DINOFLAGELLATE CYSTS; SURFACE SEDIMENTS; COASTAL WATERS; RIBOSOMAL DNA; SEQUENCE DATA; THECA	Gonyaulax verior was initially described as Amylax diacantha from Belgian coastal waters a century ago but its detailed morphology needed restudy. Here, we established nine strains of G. verior by germinating cysts or isolating cells from localities from the European Atlantic to the Caspian Sea and the Pacific Ocean. Both cyst and thecal morphology were examined by light and scanning electron microscopy. SSU, LSU and/or ITS-5.8S rRNA gene sequences were obtained from all strains. Cells of G. verior have a plate formula of Po, 4 ', 2a, 6-7 '', 6C, 6S, 6 ''', 1p, 1 '''' with an L-type ventral organisation, characterised by two either straight or curved antapical horns of variable length. Cysts of G. verior are oval, smooth and contain one or two yellow accumulation bodies. The maximum-likelihood and Bayesian inference analyses based on SSU and LSU rRNA gene sequences revealed two clades of G. verior, referred to as ribotypes A and B. Genetic distances based on ITS-5.8S rRNA gene sequences within the same ribotype were less than 0.06, but greater than 0.32 between ribotypes. G. verior is reclassified as Sourniaea diacantha gen. et comb. nov., which is attributed to Lingulodiniaceae together with Pyxidinopsis, Lingulodinium and Amylax. Our results suggest that Lingulodiniaceae can be separated from Protoceratiaceae and Gonyaulacaceae based on ventral organisation, apical complex, ventral pore and number of anterior intercalary plates. One strain of S. diacantha was examined for yessotoxin production by LC-MS/MS but did not produce toxin.	[Zhang, Wei; Gu, Haifeng] Minist Nat Resources, Dept Marine Biol & Ecol, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Li, Zhun] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures, Biol Resource Ctr, Jeongeup 56212, South Korea; [Mertens, Kenneth Neil; Derrien, Amelie] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Pospelova, Vera] Univ Victoria, Sch Earth & Ocean Sci, OEASB A405,POB 1700 16 STN CSC, Victoria, BC V8W 2Y2, Canada; [Pospelova, Vera] Univ Minnesota, Dept Earth & Environm Sci, 116 Church St SE, Minneapolis, MN 55455 USA; [Carbonell-Moore, M. Consuelo] Oregon State Univ, Coll Agr Sci, Dept Bot & Plant Pathol, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Bagheri, Siamak] AREEO, Iranian Fisheries Sci Inst, Inland Waters Aquaculture Res Ctr, Anzali 4316713111, Iran; [Matsuoka, Kazumi] Osaka Inst Technol, Asahi Ku, 5-16-1 Omiya, Osaka 5358585, Japan; [Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Gu, Haifeng] Fujian Prov Key Lab Marine Ecol Conservat & Resto, Xiamen 361005, Peoples R China	Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; Korea Research Institute of Bioscience & Biotechnology (KRIBB); Ifremer; University of Victoria; University of Minnesota System; University of Minnesota Twin Cities; Oregon State University; Osaka Institute of Technology; Korea Institute of Ocean Science & Technology (KIOST)	Gu, HF (通讯作者)，Minist Nat Resources, Dept Marine Biol & Ecol, Inst Oceanog 3, Xiamen 361005, Peoples R China.; Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.; Gu, HF (通讯作者)，Fujian Prov Key Lab Marine Ecol Conservat & Resto, Xiamen 361005, Peoples R China.	shh961121@kiost.ac.kr; guhaifeng@tio.org.cn	LI, ZHUN/GLT-3478-2022; Bagheri, Siamak/S-2035-2016; Mertens, Kenneth/AAO-9566-2020; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Matsuoka, Kazumi/0000-0001-6015-558X; LI, ZHUN/0000-0001-8961-9966; Gu, Haifeng/0000-0002-2350-9171; Bagheri, Siamak/0000-0002-4645-7634; Mertens, Kenneth/0000-0003-2005-9483; Pospelova, Vera/0000-0003-4049-8133; Derrien, Amelie/0000-0001-9656-7850; CARBONELL-MOORE, M. Consuelo/0000-0001-8430-2900; Shin, Hyeon Ho/0000-0002-9711-6717	National Key Research and Development Program of China [2016YFE0202100]; National Natural Science Foundation of China [41676117]; KRIBB Research Initiative Program; Marine Biotechnology Program - Ministry of Oceans and Fisheries of the Korean Government [20170431]; KIOST project [PE99721]; Natural Sciences and Engineering Research Council of Canada (NSERC)	National Key Research and Development Program of China(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); KRIBB Research Initiative Program; Marine Biotechnology Program - Ministry of Oceans and Fisheries of the Korean Government; KIOST project; Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC))	This work was supported by the National Key Research and Development Program of China (2016YFE0202100), the National Natural Science Foundation of China (41676117), the KRIBB Research Initiative Program, the Marine Biotechnology Program funded by the Ministry of Oceans and Fisheries of the Korean Government (20170431), and by the KIOST (PE99721) project. Funding for collection of sediments in coastal waters of British Columbia (Canada) was provided by a Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery Grant to VP.	Adachi M, 1996, J PHYCOL, V32, P424, DOI 10.1111/j.0022-3646.1996.00424.x; Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; Alvarez G, 2016, HARMFUL ALGAE, V58, P8, DOI 10.1016/j.hal.2016.07.006; Amorim A., 2013, BIOL GEOLOGICAL PERS, P215; [Anonymous], 1919, MUSEE ROYAL HIST NAT; [Anonymous], 1993, SPEC PUBL NUMBER; ATHANASSOPOULOS G., 1931, BULL INST OCEANOGR [MONACO], V588, P1; Balech E., 1988, Publ. Espec. Inst. Esp. Oceanogr., V1, P1; Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J	Dai, L; Yu, RC; Geng, HX; Zhao, Y; Zhang, QC; Kong, FZ; Chen, ZF; Zhao, JY; Zhou, MJ				Dai, Li; Yu, Ren-Cheng; Geng, Hui-Xia; Zhao, Yue; Zhang, Qing-Chun; Kong, Fan-Zhou; Chen, Zhen-Fan; Zhao, Jia-Yu; Zhou, Ming-Jiang			Resting cysts of <i>Alexandrium catenella</i> and <i>A</i>. <i>pacificum</i> (Dinophyceae) in the Bohai and Yellow Seas, China: Abundance, distribution and implications for toxic algal blooms	HARMFUL ALGAE			English	Article						Alexandrium catenella (A. fundyense); Alexandrium pacificum; Cysts, qPCR; Harmful algal bloom	TAMARENSE-SPECIES-COMPLEX; PARALYTIC SHELLFISH TOXINS; TIME PCR ASSAY; DINOFLAGELLATE CYSTS; SURFACE SEDIMENTS; GENUS ALEXANDRIUM; FUNDYENSE; COAST; RIVER; BAY	The Alexandrium tamarense species complex consists of 5 closely related species that are important bloom-forming dinoflagellates with a complex life cycle. The formation of resting cyst is a key strategy to resist harsh environmental conditions. In this study, the resting cysts of two major bloom-forming species of the A. tamarense species complex in China, A. catenella (Whedon & Kof.) Balech (previously A. fundyense, or A. tamarense species complex Group I) and A. pacificum Litaker (A. tamarense species complex Group IV), were studied in surface sediment collected from the Bohai Sea (BS) and Yellow Sea (YS) during two cruises conducted in 2012 and 2015. Cyst abundance of the A. tamarense species complex was first quantified by the primuline-staining method, and cysts of the two species were subsequently determined using two real-time quantitative PCR (qPCR) assays. Results showed that resting cysts of the A. tamarense species complex were more abundant in the YS than the BS (mean of 480 and 33 cysts g dry weight, DW-1 of sediment, respectively). Cysts were mainly found in the central portion of the northern YS, the area SE (southeast) of the Shandong peninsula, and the area near the Subei Shoal in the southern YS, where surface sediment had a high percentage of clay and silt (particle size < 63 mu m) content. The maximum cyst abundance recorded was 3090 cysts g DW-1 of sediment in 2012 and 3448 cysts g DW-1 in 2015, respectively. Cysts were mainly composed of A. catenella in the YS and the BS, while those of A. pacificum were only detected occasionally at some sampling sites in the YS. Highly abundant resting cysts in surface sediment of the YS may serve as "seed banks" for recurrent toxic blooms of A. catenella and the associated shellfish contamination by paralytic shellfish toxins in the YS.	[Dai, Li; Yu, Ren-Cheng; Zhang, Qing-Chun; Kong, Fan-Zhou; Chen, Zhen-Fan; Zhao, Jia-Yu; Zhou, Ming-Jiang] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Yu, Ren-Cheng; Zhang, Qing-Chun; Kong, Fan-Zhou] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Dai, Li; Yu, Ren-Cheng; Chen, Zhen-Fan; Zhao, Jia-Yu] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Yu, Ren-Cheng; Zhang, Qing-Chun; Kong, Fan-Zhou] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Geng, Hui-Xia] Chinese Acad Sci, Inst Oceanol, Changjiang River Estuary Ecosyst Res Stn, Qingdao 266071, Peoples R China; [Zhao, Yue] Shandong Univ Sci & Technol, Coll Ocean Sci & Engn, Qingdao 266590, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Chinese Academy of Sciences; Institute of Oceanology, CAS; Shandong University of Science & Technology	Yu, RC (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	rcyu@qdio.ac.cn	Yu, Rencheng/J-4450-2017; Geng, Hui-Xia/X-5380-2018	Yu, Rencheng/0000-0001-6430-9224; Geng, Hui-Xia/0000-0002-6398-7864; Chen, Zhenfan/0000-0001-9060-6193	Ministry of Science and Technology (MoST) [2016YFE0101500]; Science and Technology Basic Resource Investigation Program of China [2018FY100200]; Qingdao National Laboratory for Marine Science and Technology Program [2016ASKJ02]; NSFC [NORC2015-01]	Ministry of Science and Technology (MoST)(Ministry of Science and Technology, China); Science and Technology Basic Resource Investigation Program of China; Qingdao National Laboratory for Marine Science and Technology Program; NSFC(National Natural Science Foundation of China (NSFC))	The authors greatly appreciate the constructive advice from two anonymous reviewers. They thank Jian-Hua Chen, Dr. Yang Liu, Dr. Jin-Xiu Wang, and Dr. Xiao-Dong Li, Institute of Oceanology, Chinese Academy of Sciences, for assistance during the cruises and sample collection, Prof. Hai-Feng Gu, Dr. Zhao-He Luo and Ms. Na Wang, Third Institute of Oceanography, People's Republic of China Ministry of Natural Resources, for cyst sample processing and analysis, and Dr. Yan Gao, Ministry of Natural Resources, for qPCR assays. They also thank Da-Wei Tian and Hai-Feng Tu for their help in using graphics software. This study was supported by a project financed by the National Key R&D Program 2016YFE0101500 by the Ministry of Science and Technology (MoST), the Science and Technology Basic Resource Investigation Program of China (grant 2018FY100200), Qingdao National Laboratory for Marine Science and Technology Program (grant 2016ASKJ02). Sample collection during the two cruises was supported by the NSFC (NORC2015-01).	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J	Liu, YY; Hu, ZX; Deng, YY; Tang, YZ				Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong			Evidence for resting cyst production in the cosmopolitan toxic dinoflagellate <i>Karlodinium veneficum</i> and the cyst distribution in the China seas	HARMFUL ALGAE			English	Article						Karlodinium veneficum; Resting cyst; Distribution; Fluorescence in situ hybridization (FISH); Cyst mapping	REAL-TIME PCR; DELAWARE INLAND BAYS; COCHLODINIUM-POLYKRIKOIDES; GYRODINIUM-GALATHEANUM; GONYAULAX-TAMARENSIS; HETEROSIGMA-AKASHIWO; QUANTITATIVE PCR; CHESAPEAKE-BAY; ALGAL BLOOMS; DINOPHYCEAE	The naked dinoflagellate Karlodinium veneficum is a cosmopolitan and toxic species that frequently forms harmful algal blooms (HABs) in coastal waters. This species has been intensively studied from multiple aspects including toxicology, toxins, nutrition mode (e.g., mixotrophy, phagotrophy, etc.), blooming dynamics, allelopathy, and behavior, while the mechanisms accounting for its global distribution and possible invasion to new regions have not been investigated. Since the first report of a bloom of this species from the South China Sea in 2003, K. veneficum has been frequently detected in coastal waters of China. While resting cyst has been well documented to play vital roles in the initiation and decline of HABs and in facilitating geographical expansion of HABs species, whether or not K. veneficum forms resting cyst remains an open question. Here, we provide proofs for the resting cyst formation in K. veneficum based on both the observations on the life history of clonal cultures and cyst detections from field sediment. We microscopically observed the mating gametes, gametes in fusion, planozygotes (judged from the two longitudinal flagella and cell morphology such as a larger size), dark brown, thick-walled cysts with smooth surface, and cyst germination. The resting cyst was produced homothallically (i.e. from single clonal culture). We also determined the diploidity of cysts via measuring the copy numbers of the large subunit (LSU) rRNA gene in resting cysts and vegetative cells. The presence of K. veneficum cysts in field sediments was detected via fluorescence in situ hybridization (FISH) using species-specific probes, and further confirmed by single-cell PCR sequencing for the FISH-detected cysts. The distribution and abundance of K. veneficum cysts in the China Seas (Bohai Sea, Yellow Sea, East China Sea, and South China Sea) were mapped using a combined approach of real-time PCR and FISH, and quantified after measuring and taking into account the copy numbers of LSU rRNA gene in vegetative cells and cysts. We found a wide distribution of resting cysts of this organism in the seas of China, but generally with a low abundance in most of the samples (0 to 15 cysts per 32 g of wet sediment for FISH method; 0 to 25 cysts per 32 g of wet sediment for qPCR method). The confirmation of resting cyst production from both the laboratory cultures and field sediments and detection of a wide distribution of cysts in the China coasts in this study provide a possible mechanistic explanation for the frequent recurrences of blooms and the cosmopolitan distribution of K. veneficum. Our work also necessitates both a more intensive investigation on the life history (e.g. germination potential of cysts in the field) and an extensive cyst monitoring in coastal sediments, in order to better understand the general ecology and the bloom dynamics specific to this important species.	[Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China; [Liu, Yuyang] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Li, Yang/KFB-5350-2024		National Science Foundation of China [41976134, 41776125, 61533011, 41476142]; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) [2018SDKJ0504-2]; Science & Technology Basic Resources Investigation Program of China [2018FY100200]; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences [COMS2019Q09]; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology [LMEES-CTSP-2018-1]	National Science Foundation of China(National Natural Science Foundation of China (NSFC)); Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao); Science & Technology Basic Resources Investigation Program of China; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology	We thank Dr. Yuanyuan Sun from CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences for assistance with SEM sample preparation, and the crew of research vessel "CHUANGXIN" and staff from Jiaozhou Bay National Marine Ecosystem Research Station, Institute of Oceanology, Chinese Academy of Sciences for collecting sediment samples. This work was financially supported by the National Science Foundation of China [No. 41476142]; the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao)[No. 2018SDKJ0504-2]; the Science & Technology Basic Resources Investigation Program of China [2018FY100200]; the Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences (No. COMS2019Q09); the National Science Foundation of China [Nos 41976134, 41776125, 61533011]; and the Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology [No. LMEES-CTSP-2018-1].	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J	Hoham, RW; Remias, D				Hoham, Ronald W.; Remias, Daniel			Snow and Glacial Algae: A Review<SUP>1</SUP>	JOURNAL OF PHYCOLOGY			English	Review						albedo; community structure; cryophilic; environmental parameters; genomics; glacial algae; life cycles; primary productivity; secondary metabolites; snow algae	COMB-NOV CHLOROPHYTA; ICE-BINDING PROTEINS; UPSTATE NEW-YORK; CHLAMYDOMONAS-NIVALIS; WINDMILL ISLANDS; CONTINENTAL ANTARCTICA; CHLOROMONAS-CHENANGOENSIS; LIFE-HISTORY; MOLECULAR PHYLOGENY; MICROBIAL DIVERSITY	Snow or glacial algae are found on all continents, and most species are in the Chlamydomonadales (Chlorophyta) and Zygnematales (Streptophyta). Other algal groups include euglenoids, cryptomonads, chrysophytes, dinoflagellates, and cyanobacteria. They may live under extreme conditions of temperatures near 0 degrees C, high irradiance levels in open exposures, low irradiance levels under tree canopies or deep in snow, acidic pH, low conductivity, and desiccation after snow melt. These primary producers may color snow green, golden-brown, red, pink, orange, or purple-grey, and they are part of communities that include other eukaryotes, bacteria, archaea, viruses, and fungi. They are an important component of the global biosphere and carbon and water cycles. Life cycles in the Chlamydomonas-Chloromonas-Chlainomonas complex include migration of flagellates in liquid water and formation of resistant cysts, many of which were identified previously as other algae. Species differentiation has been updated through the use of metagenomics, lipidomics, high-throughput sequencing (HTS), multi-gene analysis, and ITS. Secondary metabolites (astaxanthin in snow algae and purpurogallin in glacial algae) protect chloroplasts and nuclei from damaging PAR and UV, and ice binding proteins (IBPs) and polyunsaturated fatty acids (PUFAs) reduce cell damage in subfreezing temperatures. Molecular phylogenies reveal that snow algae in the Chlamydomonas-Chloromonas complex have invaded the snow habitat at least twice, and some species are polyphyletic. Snow and glacial algae reduce albedo, accelerate the melt of snowpacks and glaciers, and are used to monitor climate change. Selected strains of these algae have potential for producing food or fuel products.	[Hoham, Ronald W.] Colgate Univ, Dept Biol, Hamilton, NY 13346 USA; [Remias, Daniel] Univ Appl Sci Upper Austria, Sch Engn, A-4600 Wels, Austria	Colgate University	Hoham, RW (通讯作者)，Colgate Univ, Dept Biol, Hamilton, NY 13346 USA.; Remias, D (通讯作者)，Univ Appl Sci Upper Austria, Sch Engn, A-4600 Wels, Austria.	rhoham@colgate.edu; d.remias@fh-wels.at	Remias, Daniel/A-1966-2010	Remias, Daniel/0000-0003-0896-435X; Hoham, Ronald/0000-0002-6323-4360	Austrian Science Fund (FWF) [P29959]; Austrian Science Fund (FWF) [P29959] Funding Source: Austrian Science Fund (FWF)	Austrian Science Fund (FWF)(Austrian Science Fund (FWF)); Austrian Science Fund (FWF)(Austrian Science Fund (FWF))	We thank the Austrian Science Fund (FWF) project P29959 to DR for funding. We also thank both reviewers for their constructive comments, and RH thanks Dr. Pete Siver, Connecticut College, for his encouragement to do this Review.	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Phycol.	APR	2020	56	2					264	282		10.1111/jpy.12952	http://dx.doi.org/10.1111/jpy.12952		FEB 2020	19	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	LC4PU	31825096	Green Published, hybrid	Y	N	2025-03-11	WOS:000516986300001
J	Kumar, PS; Kumaraswami, M; Ezhilarasan, P; Rao, GD; Sivasankar, R; Rao, VR; Ramu, K				Kumar, P. Sathish; Kumaraswami, M.; Ezhilarasan, P.; Rao, G. Durga; Sivasankar, R.; Rao, V. Ranga; Ramu, K.			Blooming of <i>Gonyaulax polygramma</i> along the southeastern Arabian Sea: Influence of upwelling dynamics and anthropogenic activities	MARINE POLLUTION BULLETIN			English	Article						Harmful algal bloom; Arabian Sea; Gonyaulax polygramma; Upwelling index; Estuarine runoff; MODIS Aqua	HARMFUL ALGAL BLOOMS; SOUTHWEST COAST; DINOFLAGELLATE CYSTS; TROPICAL ESTUARY; CLIMATE-CHANGE; WEST-COAST; VARIABILITY; NUTRIENT; WATERS; INDIA	The influence of upwelling on the phytoplankton community was examined during the upwelling-relaxation period in the southeastern Arabian Sea. Elevated upwelling intensity during the summer monsoon season of 2016 resulted in the re-suspension of harmful dinoflagellates into the surface water. Further, the surplus of phosphorus (P) inputs into the coastal waters from estuarine runoff during the upwelling-relaxation period induced blooming of Gonyaulax polygramma (4.9 x 10(6) cells L-1). Results from canonical correspondence analysis revealed that elevated upwelling intensity, P and salinity during the year 2016 likely triggered the bloom of G. polygramma in the study region. HABs like G. polygramma threaten fish stocks such as sardines which have a vital role in the ecosystem. Studies on phytoplankton communities and nutrient dynamics in upwelling systems would be useful in predicting the incidence/toxic effects of harmful algal blooms as these regions have a high potential for fisheries.	[Kumar, P. Sathish; Kumaraswami, M.; Ezhilarasan, P.; Rao, G. Durga; Sivasankar, R.; Rao, V. Ranga; Ramu, K.] Minist Earth Sci, NCCR, NIOT Campus, Chennai, Tamil Nadu, India; [Kumar, P. Sathish] Minist Earth Sci, NIOT, Chennai, Tamil Nadu, India	Ministry of Earth Sciences (MoES) - India; National Centre for Coastal Research (NCCR); Ministry of Earth Sciences (MoES) - India; National Institute of Ocean Technology (NIOT)	Kumar, PS (通讯作者)，Minist Earth Sci, NCCR, NIOT Campus, Chennai, Tamil Nadu, India.	marinesathis@gmail.com	Perumal, Sathish kumar/JBI-7520-2023; Munnooru, Kumaraswami/AAR-8108-2020; GIJJAPU, DURGARAO/ADY-1642-2022; Munnooru, Kumaraswami/HZJ-7837-2023	R, Sivasankar/0000-0003-4717-5097; GIJJAPU, DURGARAO/0000-0002-2235-0437; Munnooru, Kumaraswami/0000-0001-5779-5842	Ministry of Earth Sciences (MoES), Government of India; NCCR, MoES, Government of India	Ministry of Earth Sciences (MoES), Government of India(Ministry of Earth Sciences (MoES) - India); NCCR, MoES, Government of India	The authors thank the Secretary, Ministry of Earth Sciences (MoES), Government of India and Director, NCCR, MoES, Government of India for the financial support and facilities during the study period. The authors also acknowledge Dr. Takeo Horiguchi, Hokkaido University, Japan and Dr. Hae-Jin Jeong, Seoul National University, Korea for their help in identification of the reported phytoplankton bloom species.	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Pollut. Bull.	FEB	2020	151								110817	10.1016/j.marpolbul.2019.110817	http://dx.doi.org/10.1016/j.marpolbul.2019.110817			6	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	KN3RQ	32056611				2025-03-11	WOS:000514758400076
J	Roselli, L; Vadrucci, MR; Belmonte, M; Ciciriello, P; Rubino, F; Ungaro, N; Caroppo, C				Roselli, Leonilde; Vadrucci, Maria Rosaria; Belmonte, Manuela; Ciciriello, Pierangelo; Rubino, Fernando; Ungaro, Nicola; Caroppo, Carmela			Two - stages bloom of <i>Margalefidinium</i> cf. <i>polykrikoides</i> in a Mediterranean shallow bay (Ionian Sea, Italy)	MARINE POLLUTION BULLETIN			English	Article						Bloom; Dinoflagellates; Margalefidinium cf. polykrikoides; Shallow bay; Mediterranean Sea	HARMFUL ALGAL BLOOMS; DINOFLAGELLATE COCHLODINIUM-POLYKRIKOIDES; MAR PICCOLO; PHYLOGENETIC-RELATIONSHIPS; CLIMATE-CHANGE; COASTAL AREAS; DINOPHYCEAE; GYMNODINIALES; CYSTS; PHYTOPLANKTON	The emergence of a red tide resulting in yellow-brownish discoloration of waters in Porto Cesareo bay (Italy) during July-August 2018 is reported. The species responsible for the bloom was the dinoflagellate Margalefidinium cf. polykrikoides. Cell densities reached 9.1 x 10(6) cells L (-1) during the initial outbreak. A second peak was observed about three weeks later reaching 6.7 x 10(5) cells L-1. Study of live specimens showed great variation in cell size and shape. Different cyst morphotypes were found in the water samples and in the sediment. For the first time, we followed several stages of the life cycle of M. cf. polykrikoides in natural samples. Fish die-offs in the bay were not observed, however this high-density bloom may have caused consequences on the ecosystem (amount of mucilage on the beach) and in turn, on tourism that is the main activity in the area during the summer season.	[Roselli, Leonilde; Vadrucci, Maria Rosaria; Ciciriello, Pierangelo; Ungaro, Nicola] Reg Agcy Environm Prevent & Protect ARPA Puglia, Corso Trieste 27, Bari, Italy; [Belmonte, Manuela; Rubino, Fernando; Caroppo, Carmela] CNR, IRSA, Natl Res Council, Water Res Inst,Unit Taranto, Via Roma 3, I-74121 Taranto, Italy	Regional Environmental Protection Agency - Italy; Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR)	Roselli, L (通讯作者)，Reg Agcy Environm Prevent & Protect ARPA Puglia, Corso Trieste 27, Bari, Italy.	leonilde.roselli@gmail.com	Belmonte, Marisol/AAG-9759-2019; Caroppo, Carmela/AAW-6575-2020; Rubino, Fernando/GOP-0332-2022	CAROPPO, CARMELA/0000-0002-8316-4195; Rubino, Fernando/0000-0003-2552-2510; Roselli, Leonilde/0000-0002-0002-9415				Aminot A., 2009, Nutrients in seawater using segmented flow analysis, P143; [Anonymous], 2016, APULIA REGION GLOBAL; [Anonymous], 1958, Mitt. Int. Ver. Theor. Angew. 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FEB	2020	151								110825	10.1016/j.marpolbul.2019.110825	http://dx.doi.org/10.1016/j.marpolbul.2019.110825			14	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	KN3RQ	32056617				2025-03-11	WOS:000514758400070
J	Romero, OE; Baumann, KH; Zonneveld, KAF; Donner, B; Hefter, J; Hamady, B; Pospelova, V; Fischer, G				Romero, Oscar E.; Baumann, Karl-Heinz; Zonneveld, Karin A. F.; Donner, Barbara; Hefter, Jens; Hamady, Bambaye; Pospelova, Vera; Fischer, Gerhard			Flux variability of phyto- and zooplankton communities in the Mauritanian coastal upwelling between 2003 and 2008	BIOGEOSCIENCES			English	Article							DINOFLAGELLATE CYST PRODUCTION; CAPE BLANC MAURITANIA; SEDIMENT TRAP RECORD; NORTHWEST AFRICA; CURRENT SYSTEM; NW AFRICA; SINKING PARTICLES; SURFACE SEDIMENTS; ORGANIC-MATTER; TIME-SERIES	Continuous multiyear records of sediment-trap-gained microorganism fluxes are scarce. Such studies are important to identify and to understand the main forcings behind seasonal and multiannual evolution of microorganism flux dynamics. Here, we assess the long-term flux variations and population dynamics of diatoms, coccolithophores, calcareous and organic dinoflagellate cysts, foraminifera and pteropods in the eastern boundary upwelling ecosystem of the Canary Current. A multiannual, continuous sediment trap experiment was conducted at the mooring site CBeu (Cap Blanc eutrophic; similar to 20 degrees N, 18 degrees W; trap depth is ca. 1300 m) off Mauritania (northwest Africa), between June 2003 and March 2008. Throughout the study, the reasonably consistent good match of fluxes of microorganisms and bulk mass reflects the seasonal occurrence of the main upwelling season and relaxation and the contribution of microorganisms to mass flux off Mauritania. A clear successional pattern of microorganisms, i.e., primary producers followed by secondary producers, is not observed. High fluxes of diatoms, coccolithophores, organic dinoflagellate cysts, and planktonic foraminifera occur simultaneously. Peaks of calcareous dinoflagellate cysts and pteropods mostly occurred during intervals of upwelling relaxation. A striking feature of the temporal variability of population occurrences is the persistent pattern of seasonal groups contributions. Species of planktonic foraminifera, diatoms, and organic dinoflagellate cysts typical of coastal upwelling, as well as cooler-water planktonic foraminifera and the coccolithophore Gephyro-capsa oceanica, are abundant at times of intense upwelling (late winter through early summer). Planktonic foraminifera and calcareous dinoflagellate cysts are dominant in warm pelagic surface waters, and all pteropod taxa are more abundant in fall and winter when the water column stratifies. Similarly, coccolithophores of the upper and lower photic zones, together with Emiliania huxleyi, and organic dinoflagellate cysts dominate the assemblage during phases of upwelling relaxation and deeper layer mixing. A significant shift in the "regular" seasonal pattern of taxa relative contribution is observed between 2004 and 2006. Benthic diatoms strongly increased after fall 2005 and dominated the diatom assemblage during the main upwelling season. Additional evidence for a change in population dynamics is the short dominance of the coccolithophore Umbili-cosphaera annulus, the occurrence of the pteropod Limacina bulimoides and the strong increase in the flux of calcareous dinoflagellate cysts, abundant in warm tropical oligotrophic waters south of the study area after fall 2005. Altogether, this suggests that pulses of southern waters were transported to the sampling site via the northward Mauritania Current. Our multiannual trap experiment provides a unique opportunity to characterize temporal patterns of variability that can be extrapolated to other eastern boundary upwelling ecosystems (EBUEs), which are experiencing or might experience similar future changes in their plankton community.	[Romero, Oscar E.; Baumann, Karl-Heinz; Zonneveld, Karin A. F.; Donner, Barbara; Fischer, Gerhard] Univ Bremen, MARUM Ctr Marine Environm Sci, Leobener Str 8, D-28359 Bremen, Germany; [Baumann, Karl-Heinz; Fischer, Gerhard] Univ Bremen, Dept Geosci, Klagenfurter Str 2-4, D-28359 Bremen, Germany; [Hefter, Jens] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, D-27568 Bremerhaven, Germany; [Hamady, Bambaye] IMROP, BP 22, Nouadhibou, Mauritania; [Pospelova, Vera] Univ Minnesota, Coll Sci & Engn, Dept Earth & Environm Sci, 116 Church St SE, Minneapolis, MN 55455 USA; [Pospelova, Vera] Univ Victoria, Sch Earth & Ocean Sci, OEASB A405,POB 1700 16 STN CSC, Victoria, BC V8W 2Y2, Canada	University of Bremen; University of Bremen; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; University of Minnesota System; University of Minnesota Twin Cities; University of Victoria	Romero, OE (通讯作者)，Univ Bremen, MARUM Ctr Marine Environm Sci, Leobener Str 8, D-28359 Bremen, Germany.	oromero@marum.de	Hefter, Jens/LNR-6235-2024; Romero, Oscar/T-9717-2019	Fischer, Gerhard/0000-0001-5089-4741; Hefter, Jens/0000-0002-5823-1966; Pospelova, Vera/0000-0003-4049-8133; Romero, Oscar/0000-0003-0209-3258	German Research Foundation (DFG) [SFB 261]; Research Center Ocean Margins (RCOM); MARUM Excellence Cluster "The Ocean in the Earth System" (University of Bremen, Bremen, Germany)	German Research Foundation (DFG)(German Research Foundation (DFG)); Research Center Ocean Margins (RCOM); MARUM Excellence Cluster "The Ocean in the Earth System" (University of Bremen, Bremen, Germany)	We are greatly indebted to the masters and crews of the RV Poseidon and RV MS Merian. We greatly appreciate the help of the RV Poseidon headquarters at Geomar (Klas Lackschewitz, Kiel, Germany) during the planning phases of the research expeditions and the support by the German, Moroccan and Mauritanian authorities in Berlin, Rabat and Nouakchott. We also thank the IMROP and its director at Nouadhibou (Mauritania) for their general support and the help in getting the necessary permissions to perform our multiyear trap experiments in Mauritanian coastal waters. We thank Gotz Ruhland, Nicolas Nowald and Marco Klann (MARUM, Bremen) for mooring deployments and lab work on the samples. This work was possible due to the longterm funding by the German Research Foundation (DFG) through SFB 261, the Research Center Ocean Margins (RCOM) and the MARUM Excellence Cluster "The Ocean in the Earth System" (University of Bremen, Bremen, Germany). Vera Pospelova is the Hanse-Wissenschaftskolleg (HWK) senior research fellow in marine and climate research at the Institute for Advanced Study (Delmenhorst, Germany). Manuel Bringue and an anonymous referee are acknowledged for their very helpful reviews.	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J	Jantschke, A; Pinkas, I; Schertel, A; Addadi, L; Weiner, S				Jantschke, Anne; Pinkas, Iddo; Schertel, Andreas; Addadi, Lia; Weiner, Steve			Biomineralization pathways in calcifying dinoflagellates: Uptake, storage in MgCaP-rich bodies and formation of the shell	ACTA BIOMATERIALIA			English	Article						Biomineralization; Dinoflagellates; Guanine crystals; Calcitic cysts; Cryo-FIB-SEM	THORACOSPHAERA-HEIMII DINOPHYCEAE; SURFACE SEDIMENTS; CALCIUM-TRANSPORT; LIFE-CYCLE; CYSTS; CALCIFICATION; DISTRIBUTIONS; CALRETICULIN; TEMPERATURE; MICROALGAE	Little is known about shell formation of calcareous dinoflagellates, despite the fact that they are one of the major calcifying organisms of the phytoplankton. Here, calcitic cyst formation in two representative members of calcareous dinoflagellates is investigated using cryo-electron microscopy (cryo-SEM and cryo-FIB-SEM) in combination with micro-Raman and infrared spectroscopy. Only calcein-AM and not calcein enters these cells, indicating active uptake of calcium and other divalent cations. Multifunctional vacuoles containing crystalline inclusions are observed, and the crystals are identified as anhydrous guanine in the beta-form. The same vacuolar enclosures contain dense magnesium-, calcium-, and phosphorous-rich mineral bodies. These bodies are presumably secreted into the outer matrix where calcite forms. Calcite formation occurs via multiple independent nucleation events, and the different crystals grow with preferred orientation into a dense reticular network that forms the mature calcitic shell. We suggest a biomineralization pathway for calcareous dinoflagellates that includes (1) active uptake of calcium through the membranes, (2) deposition of Mg2+- and Ca2+-ions inside disordered MgCaP-rich mineral bodies, (3) secretion of these bodies to the inter-membrane space, and (4) Formation and growth of calcite into a dense reticulate network. This study provides new insights into calcium uptake, storage and transport in calcifying dinoflagellates. Statement of significance Little is known about the shell formation of calcareous dinoflagellates, despite the fact that they are one of the major calcifying organisms of the phytoplankton. We used state-of-the-art cryo-electron microscopy (cryo-SEM and cryo-FIB-SEM) in combination with micro-Raman spectroscopy to provide new insights into mineral formation in calcifying dinoflagellates. To date, intracellular crystalline calcite was assumed to be involved in calcite shell formation. Surprisingly, we identify these crystalline inclusions as anhydrous guanine suggesting that they are not involved in biomineralization. Instead, a key finding is that MgCaP-rich bodies are probably secreted into the outer matrix where the calcite shell is formed. We suggest that these bodies are an essential part of Ca-uptake, -storage and -transport and propose a new biomineralization model. (C) 2019 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.	[Jantschke, Anne; Addadi, Lia; Weiner, Steve] Weizmann Inst Sci, Dept Biol Struct, IL-76100 Rehovot, Israel; [Jantschke, Anne] Tech Univ Dresden, Bioanalyt Chem, D-01062 Dresden, Germany; [Pinkas, Iddo] Weizmann Inst Sci, Dept Chem Res Support, IL-76100 Rehovot, Israel; [Schertel, Andreas] Carl Zeiss Microscopy GmbH, TASC, Carl Zeiss Str 22, D-73447 Oberkochen, Germany	Weizmann Institute of Science; Technische Universitat Dresden; Weizmann Institute of Science; Carl Zeiss AG	Weiner, S (通讯作者)，Weizmann Inst Sci, Dept Biol Struct, IL-76100 Rehovot, Israel.; Jantschke, A (通讯作者)，Tech Univ Dresden, Bioanalyt Chem, D-01062 Dresden, Germany.	anne.jantschke@tu-dresden.de; steve.weiner@weizmann.ac.il	Pinkas, Iddo/I-7970-2019; Jantschke, Anne/AAG-5198-2019	Pinkas, Iddo/0000-0001-7434-9844; Jantschke, Anne/0000-0003-1257-8830	DFG postdoctoral fellowship [JA 2659/1]	DFG postdoctoral fellowship(German Research Foundation (DFG))	We thank Eyal Shimoni and Ifat Kaplan-Ashiri (Weizmann Institute of Science) for help with cryo-SEM and EDS measurements. The kind help of Barbara Melkonian (CCAC) with the provision and cultivation of the dinoflagellates is highly appreciated. Matthias Finger provided the Spectrallmaging software and was a great help analyzing the Raman data. We thank Dr. Saskia MimietzOeckler and Andreas Halladay, Leica Microsystems for support. Anne Jantschke was supported by a DFG postdoctoral fellowship (JA 2659/1). LA is the incumbent of the Dorothy and Patrick Gorman Professorial Chair of Biological Ultrastructure.	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F., 2005, Palaeontologische Zeitschrift, V79, P61	73	27	27	2	69	ELSEVIER SCI LTD	OXFORD	THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND	1742-7061	1878-7568		ACTA BIOMATER	Acta Biomater.	JAN 15	2020	102						427	439		10.1016/j.actbio.2019.11.042	http://dx.doi.org/10.1016/j.actbio.2019.11.042			13	Engineering, Biomedical; Materials Science, Biomaterials	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Materials Science	KG2PX	31785382				2025-03-11	WOS:000509786400031
J	Yang, Q; Jiang, ZW; Zhou, X; Zhang, RN; Xie, ZX; Zhang, S; Wu, Y; Ge, YM; Zhang, XL				Yang, Qiao; Jiang, Zhiwei; Zhou, Xin; Zhang, Ruonan; Xie, Zhangxian; Zhang, Shuo; Wu, Yiru; Ge, Yaming; Zhang, Xiaoling			<i>Haliea alexandrii</i> sp. nov., isolated from phycosphere microbiota of the toxin-producing dinoflagellate <i>Alexandrium catenella</i>	INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY			English	Article						Haliea alexandrii sp. nov; phycosphere microbiota; Alexandrium catenella; toxic dinoflagellate; paralytic shellfish poisoning toxins	PROPOSED MINIMAL STANDARDS; EMENDED DESCRIPTION; GAMMAPROTEOBACTERIA; MEDITERRANEA; BACTERIA; MEMBER	A Gram-negative, aerobic, non-motile, non-spore-forming and rod-shaped bacterium, named strain LZ-16-2(T), was isolated from the phycosphere microbiota of the paralytic shellfish poisoning toxin-producing marine dinoflagellate Alexandrium catenella LZT09. Strain LZ-16-2(T) grew optimally at 28 degrees C at pH 6.5 and with 3% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequence revealed that strain LZ-16-2(T) fell within the genus Haliea and was most closely related to Haliea salexigens DSM 19537(T), with which the new isolate exhibited 98.5% 16S rRNA, gene sequence similarity. The major respiratory quinone was Q-8. The predominant cellular fatty acids were C-17:1 omega 8c. summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c). summed feature 8 (C-18:1 omega 7c and/or C-18:1 omega 6c), C-17:1 omega 6c, C-11:0 3-OH and C-17:0. The major polar lipids were phosphatidylethanolamine. phosphatidylglycerol and diphosphatidylglycerol. The average nucleotide identity and in silico DNA-DNA genome hybridization relatedness values between strain LZ-16-2(T) and its closest relative, H. salexigens DSM 19537(T), were 92.8 and 55.1%, respectively. The DNA G+C content was 61.3 mol%. Differential phenotypic properties and phylogenetic distinctiveness distinguished strain LZ-16-2(T) from all other members of the genus Haliea. On the basis of the polyphasic characterization, strain LZ-16-2(T) represents a novel species of the genus Haliea, for which the name Haliea alexandrii sp. nov. is proposed. The type strain is LZ-16-2(T) (=KCTC 62344(T)=CCTCC AB2017229(T)).	[Yang, Qiao; Jiang, Zhiwei; Zhou, Xin; Zhang, Ruonan; Zhang, Shuo; Wu, Yiru; Zhang, Xiaoling] Zhejiang Ocean Univ, Coll Marine Sci & Technol, ABI Grp, Zhoushan 316021, Peoples R China; [Zhang, Ruonan] Harbin Univ Commerce, Ctr Res Life Sci & Environm Sci, Harbin 150076, Peoples R China; [Xie, Zhangxian; Ge, Yaming] Xiamen Univ, Coll Environm & Ecol, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China; [Ge, Yaming] Zhejiang Ocean Univ, Inst Innovat & Applicat, Zhoushan 316021, Peoples R China; [Zhang, Xiaoling] Zhoushan Municipal Ctr Dis Control & Prevent, Key Lab Hlth Risk Factors Seafood Zhejiang Prov, Zhoushan 316021, Peoples R China	Zhejiang Ocean University; Harbin University of Commerce; Xiamen University; Zhejiang Ocean University	Zhang, XL (通讯作者)，Zhejiang Ocean Univ, Coll Marine Sci & Technol, ABI Grp, Zhoushan 316021, Peoples R China.; Zhang, XL (通讯作者)，Zhoushan Municipal Ctr Dis Control & Prevent, Key Lab Hlth Risk Factors Seafood Zhejiang Prov, Zhoushan 316021, Peoples R China.	zhangxiaoling@zjou.edu.cn			Natural Science Foundation of Zhejiang Province [LY18D060007]; National Natural Science Foundation of China [41876114]; Medical Health Science Foundation Program of the Health Department of Zhejiang Province [2020RC137]	Natural Science Foundation of Zhejiang Province(Natural Science Foundation of Zhejiang Province); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Medical Health Science Foundation Program of the Health Department of Zhejiang Province	This work was supported by the Natural Science Foundation of Zhejiang Province (LY18D060007), the National Natural Science Foundation of China (41876114), the Medical Health Science Foundation Program of the Health Department of Zhejiang Province (2020RC137),	Bernardet JF, 2002, INT J SYST EVOL MICR, V52, P1049, DOI [10.1099/ijs.0.02136-0, 10.1099/00207713-52-3-1049]; Buczolits S, 2002, INT J SYST EVOL MICR, V52, P445, DOI 10.1099/00207713-52-2-445; Chen CY, 1998, TOXICON, V36, P515, DOI 10.1016/S0041-0101(97)00093-7; Chou HN, 1999, MANUAL MICROALGAL TO, P23; Chun J, 2018, INT J SYST EVOL MICR, V68, P461, DOI [10.1099/ijsem.0.002516, 10.1099/ijsem.0.002532]; Csotonyi JT, 2011, ARCH MICROBIOL, V193, P573, DOI 10.1007/s00203-011-0698-5; Doetsch R.N., 1981, Determinative methods of light microscopy. 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Microbiol.		2020	70	2					1133	1138		10.1099/ijsem.0.003890	http://dx.doi.org/10.1099/ijsem.0.003890			6	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	KY9IP	31751199	Bronze			2025-03-11	WOS:000522888400062
J	Chai, ZY; Hu, ZX; Liu, YY; Tang, YZ				Chai, Zhaoyang; Hu, Zhangxi; Liu, Yuyang; Tang, Yingzhong			Proof of homothally of <i>Pheopolykrikos hartmannii</i> and details of cyst germination process	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						germination; harmful algal blooms (HABs); heterothallism; homothallism; resting cyst; Pheopolykrikos hartmannii	DINOFLAGELLATE CYSTS; GONYAULAX-TAMARENSIS; POLYKRIKOS-KOFOIDII; DINOPHYCEAE; MORPHOLOGY; BLOOMS	Resting cysts play crucial roles in the ecology of dinoflagellates, especially in wintering or surviving unfavorable conditions, seeding harmful algal blooms (HABs), and facilitating the geographic expansion. Encystment of dinoflagellates is tightly coupled with sexual reproduction in most cases, which can occur either through homothallism (self-fertilization) or heterothallism (intercrossing of +/- strains). The types of sexual reproduction have important ecological implications. The toxic and HAB-forming dinoflagellate, Pheopolykrikoides hartmannii has been previously reported to be heterothallic. Here, we provide visual confirmation of homothally of P. hartmannii and the first detailed visual recording of cyst germination based on the observations of a clonal isolate from Jiaozhou Bay, China. To document the homothallism, we first observed cell pairs in sexual mating, planozygotes with two longitudinal flagella, and cysts with typical morphology as described previously from the clonal culture. We then germinated a single cyst, established a new clonal culture from one of the two daughter cells after the first cell division of the germling (i.e. from the diploid germling to two haploid cells), and produced cysts again from the newly established clonal culture. For the observation of the germination time-series, we took micrographs and videos to show all germination processes, particularly with an interesting observation of the short amoeboid stage of the germling releasing from the archeopyle (15 s), which was a landmark of the germination process and has not been reported elsewhere. This definitive evidence of homothallic sexuality and cyst production in P. hartmannii provides a new insight into the biology and ecology of the species, particularly a mechanism that may partly account for the population dynamics and ubiquitous distribution of the species.	[Chai, Zhaoyang; Hu, Zhangxi; Liu, Yuyang; Tang, Yingzhong] Chinese Acad Sci, Key Lab Marine Ecol & Environm Sci, Inst Oceanol, Qingdao 266071, Peoples R China; [Hu, Zhangxi; Tang, Yingzhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Hu, Zhangxi; Tang, Yingzhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China; [Liu, Yuyang] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Key Lab Marine Ecol & Environm Sci, Inst Oceanol, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	Chai, Zhaoyang/F-7485-2017; Li, Yang/KFB-5350-2024; ZHANG, hui jie/HTN-1690-2023		National Key R&D Program of China [2017YFC1404300]; National Natural Science Foundation of China [61533011, 41776125]; NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]; Science and Technology Basic Resources Investigation Program of China [2018FY100200]; Scientific and Technological Innovation Project of the Qingdao National Laboratory for Marine Science [2016ASKJ02]	National Key R&D Program of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences; Science and Technology Basic Resources Investigation Program of China; Scientific and Technological Innovation Project of the Qingdao National Laboratory for Marine Science	Supported by the National Key R&D Program of China (No. 2017YFC1404300), the National Natural Science Foundation of China (Nos. 61533011, 41776125), the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences (No. U1606404), the Science and Technology Basic Resources Investigation Program of China (No. 2018FY100200), and the Scientific and Technological Innovation Project of the Qingdao National Laboratory for Marine Science (No. 2016ASKJ02)	Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; Anderson D.M., 1989, ICLARM Conference Proceedings, P81; ANDERSON DM, 1978, J PHYCOL, V14, P224, DOI 10.1111/j.1529-8817.1978.tb02452.x; ANDERSON DM, 1979, ESTUAR COAST MAR SCI, V8, P279, DOI 10.1016/0302-3524(79)90098-7; Badylak S, 2004, J PLANKTON RES, V26, P1229, DOI 10.1093/plankt/fbh114; BERNSTEIN H, 1985, SCIENCE, V229, P1277, DOI 10.1126/science.3898363; Blackburn S., 2005, Algal Culturing Techniques, P399; Blackburn SI, 2001, PHYCOLOGIA, V40, P78, DOI 10.2216/i0031-8884-40-1-78.1; Bravo Isabel, 2014, Microorganisms, V2, P11; Bringué M, 2014, QUATERNARY SCI REV, V105, P86, DOI 10.1016/j.quascirev.2014.09.022; Brosnahan ML, 2017, LIMNOL OCEANOGR, V62, P2829, DOI 10.1002/lno.10664; Burt A, 2000, EVOLUTION, V54, P337; Dale B., 1986, UNESCO TECHNICAL PAP, V49, P65; Elbrächter M, 2003, J PHYCOL, V39, P629, DOI 10.1046/j.1529-8817.2003.39041.x; Figueroa RI, 2006, J PHYCOL, V42, P67, DOI 10.1111/j.1529-8817.2006.00181.x; Figueroa RI, 2005, J PHYCOL, V41, P74, DOI 10.1111/j.1529-8817.2005.04045.x; Fukuyo Yasuo., 1990, RED TIDE ORGANISMS J; Garate-Lizarraga I., 2008, Harmful Algae News, V37, P6; Garces E, 2002, LIFEHAB LIFE HIST MI; Godhe A, 2000, BOT MAR, V43, P39, DOI 10.1515/BOT.2000.004; Goodenough U, 1985, ORIGIN EVOLUTION SEX, P123; Guillard R. 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Oceanol. Limnol.	JAN	2020	38	1					114	123		10.1007/s00343-019-9077-x	http://dx.doi.org/10.1007/s00343-019-9077-x			10	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	KJ2CO					2025-03-11	WOS:000511866000010
J	Hu, ZX; Deng, YY; Luo, ZH; Shang, LX; Kong, FZ; Gu, HF; Zhao, ZX; Tang, YZ				Hu, Zhangxi; Deng, Yunyan; Luo, Zhaohe; Shang, Lixia; Kong, Fanzhou; Gu, Haifeng; Zhao, Zengxia; Tang, Ying Zhong			Characterization of the unarmored dinoflagellate <i>Pseliodinium pirum</i> (Ceratoperidiniaceae) from Jiaozhou Bay, China	PHYCOLOGICAL RESEARCH			English	Article						Apical groove; Ceratoperidinium; Cochlodinium; HAB; life history; molecular phylogeny; morphology; ultrastructure	GEN. NOV DINOPHYCEAE; PHYLOGENETIC ANALYSIS; GYMNODINIUM-AUREOLUM; MOLECULAR PHYLOGENY; SP. NOV.; MORPHOLOGY; COCHLODINIUM; ULTRASTRUCTURE; POLYKRIKOIDES; PERIDINIALES	A strain of Pseliodinium pirum was isolated from Jiaozhou Bay, China, identified based on a recently emended classification, and further characterized for its morphology using light, scanning electron, and transmission electron microscopy, and phylogeny based on SSU and partial LSU rDNA sequences. The pigment composition, life history, and potential effects on aquatic animals were also examined. We observed the typical characteristics of Ceratoperidiniaceae, in which its apical structure complex (ASC) formed a circular loop, and the ASC of our isolate comprised four to five rows of vesicles, and connected with sulcal intrusion. Epifluorescence and transmission electron microscopy revealed a bean-shaped, centrally located nucleus, with at least 76 chromosomes. Numerous rod-shaped chloroplasts were in connection to the irregularly shaped pyrenoids. Pigment analysis showed that peridinin was the most abundant among all carotenoids and other pigments. Phylogenetic analyses using maximum likelihood and Bayesian inference indicated that our isolate is conspecific with the entity Cochlodinium cf. helix (accession No. KF245459), but different from Ceratoperidinium, Kirithra, and other unidentified species of the family Ceratoperidiniaceae. Pseliodinium pirum could produce sexual, thin-walled cyst, with subspherical and spherical shape and smooth surface (without spines or rough projections). The cyst could germinate within 3 days. Bioassays did not show adverse effects of P. pirum on the finfish Oryzias melastigma and the rotifer Brachionus plicatilis, indicating it may not be a harmful species.	[Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Kong, Fanzhou; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Kong, Fanzhou; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Shang, Lixia; Kong, Fanzhou; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China; [Luo, Zhaohe; Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen, Peoples R China; [Zhao, Zengxia] Chinese Acad Sci, Jiaozhou Bay Marine Ecosyst Res Stn, Qingdao, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Third Institute of Oceanography, Ministry of Natural Resources; Ministry of Natural Resources of the People's Republic of China; Chinese Academy of Sciences	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China.	yingzhong.tang@qdio.ac.cn	Luo, Zhaohe/ITT-7163-2023; ZHANG, hui jie/HTN-1690-2023; Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171; Luo, Zhaohe/0000-0001-8662-2414; Hu, Zhangxi/0000-0002-4742-4973				Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; [Anonymous], LIPSIUS TISCHLER KI; [Anonymous], FREE LIVING UNARMORE; Boutrup PV, 2017, PROTIST, V168, P586, DOI 10.1016/j.protis.2017.08.001; Daugbjerg N, 2000, PHYCOLOGIA, V39, P302, DOI 10.2216/i0031-8884-39-4-302.1; de Salas MF, 2003, J PHYCOL, V39, P1233, DOI 10.1111/j.0022-3646.2003.03-019.x; Elbrachter M., 1979, Meteor Forschungsergebnisse Reihe D - Biologie, P1; Fensome R.A., 1993, Micropaleontology Press Special Paper; France Janja, 2009, Marine Biodiversity Records, V2, pe2, DOI 10.1017/S175526720800002X; Gómez F, 2004, PHYCOLOGIA, V43, P416, DOI 10.2216/i0031-8884-43-4-416.1; Gomez F., 2012, CICIMAR Oceanides, V27, P65; Gómez F, 2003, VIE MILIEU, V53, P43; Gomez Fernando, 2018, CICIMAR Oceanides, V33, P1; Gómez F, 2017, HARMFUL ALGAE, V63, P32, DOI 10.1016/j.hal.2017.01.008; Gómez F, 2015, PLOS ONE, V10, DOI 10.1371/journal.pone.0119676; Gu HF, 2018, PHYCOLOGIA, V57, P179, DOI 10.2216/17-76.1; Guillard R. 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Res.	JAN	2020	68	1					3	13		10.1111/pre.12385	http://dx.doi.org/10.1111/pre.12385			11	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	KC9AD					2025-03-11	WOS:000507462300001
J	del Castillo, MEM; Zamudio-Resendiz, ME; Castillo-Rivera, MA; Gutiérrez-Mendieta, F; Varona-Cordero, F; Hernández-Cárdenas, G				Meave del Castillo, Maria Esther; Eugenia Zamudio-Resendiz, Maria; Castillo-Rivera, Manuel A.; Gutierrez-Mendieta, Francisco; Varona-Cordero, Francisco; Hernandez-Cardenas, Gilberto			Co-ocurrence of two toxic dinoflagellates in Acapulco Bay, Guerrero, Mexico: an opportunity to quantify their biology and ecology	ACTA BOTANICA MEXICANA			English	Article						ENSO; Gymnodinium catentum; HAB; Mexican tropical Pacific; morphometry; Pyrodinium bahamense var. compressum	GULF-OF-CALIFORNIA; GYMNODINIUM-CATENATUM DINOPHYCEAE; BAHAMENSE VAR. COMPRESSUM; PYRODINIUM-BAHAMENSE; RED TIDE; PHYTOPLANKTON COMMUNITY; SELENIUM REQUIREMENTS; PACIFIC COAST; PROFILES; BLOOMS	Background and Aims: Harmful Algal Blooms (HAB) commonly occur in the Mexican Pacific, being important HABs of Gymnodinium catenatum (Gc) and of Pyrodinium bahamense var. compressum (Pbc) for being saxitoxin-producing dinoflagellates that cause paralytic shellfish poisoning. The latter is a taxon that sporadically occurs in the tropical Mexican Pacific. This study describes the behavior of both taxa throughout the annual cycle and analyzes their morphology, abundance, distribution, and their bloom dynamics, in relation to environmental and climatological parameters. Methods: Phytoplankton collections were made ten times from October 2009 to January 2011 within Acapulco Bay and its surroundings, together with measurements of physicochemical parameters. Climatic data were obtained from Acapulco weather station. Abundance of phytoplankton was evaluated with the Utermohl method. Statistical analyses were carried out to investigate the relationship of Gc and Pbc abundances with environmental and climatic parameters. Key results: Gc was present throughout the year 2010 in low densities and in November 2010 it reached a maximum of 189x10(3) cells l(-1) , associated with several species of diatoms and dinoflagellates, including Pbc. Gc bloom coincided with decrease in ammonium and decrease in water temperature with respect to the average. Pyrodinium bahamense morphometry from Acapulco corresponds to var. compressum. Pbc formed an intense HAB in July 2010 (reaching a maximum abundance of 773x10(3) cells l(-1)), causing significant toxicity and had an upturn in November. Conclusions: Pbc HABs in Acapulco require the occurrence of a previous HAB in the central Pacific or Gulf of Tehuantepec, Mexico, horizontal transportation of their cysts, as well as high water temperature conditions, abundant rainfall that increased the concentration of phosphates, which is propitiated in the periods of transition "El Nino"-"La Nina" events. Gc HABs in Acapulco are related to "La Nina" events, with an abrupt change in water temperature and an increase in nitrogenous forms.	[Meave del Castillo, Maria Esther; Eugenia Zamudio-Resendiz, Maria] Univ Autonoma Metropolitana Iztapalapa UAM 1, Lab Fitoplancton Marino & Salobre, Dept Hidrobiol, Av San Rafael Atlixco 186, Cdmx 09340, Mexico; [Castillo-Rivera, Manuel A.] Univ Autonoma Metropolitana Iztapalapa UAM 1, Lab Ecol Peces, Dept Biol, Av San Rafael Atlixco 186, Cdmx 09340, Mexico; [Gutierrez-Mendieta, Francisco; Varona-Cordero, Francisco] Univ Autonoma Metropolitana Iztapalapa UAM 1, Lab Ecosistemas Costeros, Dept Hidrobiol, Av San Rafael Atlixco 186, Cdmx 09340, Mexico; [Hernandez-Cardenas, Gilberto] Univ Autonoma Metropolitana Iztapalapa UAM 1, Lab Manejo Recursos Nat, Dept Biol, Av San Rafael Atlixco 186, Cdmx 09340, Mexico		del Castillo, MEM (通讯作者)，Univ Autonoma Metropolitana Iztapalapa UAM 1, Lab Fitoplancton Marino & Salobre, Dept Hidrobiol, Av San Rafael Atlixco 186, Cdmx 09340, Mexico.	mem@xanum.uam.mx	CastilloRivera, Manuel/LBH-2313-2024	VARONA-CORDERO, FRANCISCO/0000-0003-4601-4806; Castillo Rivera, Manuel Arnoldo/0000-0002-7088-1769; Gutierrez Mendieta, Francisco Jose/0000-0002-4394-5288; Hernandez Cardenas, Gilberto/0000-0001-8487-8344	Comision Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO) [HJ014]	Comision Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO)	The Comision Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO) provided the financial support received for the support of the research project: HJ014.	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J	Brosnahan, ML; Fischer, AD; Lopez, CB; Moore, SK; Anderson, DM				Brosnahan, Michael L.; Fischer, Alexis D.; Lopez, Cary B.; Moore, Stephanie K.; Anderson, Donald M.			Cyst-forming dinoflagellates in a warming climate	HARMFUL ALGAE			English	Article						Microbial life cycles; Climate change; Resting cyst dormancy	ALEXANDRIUM-FUNDYENSE BLOOMS; TROPICAL BIOLUMINESCENT BAY; BAHAMENSE VAR. COMPRESSUM; HARMFUL ALGAL BLOOMS; SOUTHERN NEW-ENGLAND; PYRODINIUM-BAHAMENSE; GONYAULAX-TAMARENSIS; RESTING CYSTS; SEDIMENT CHARACTERISTICS; PHYTOPLANKTON COMMUNITY	Many phytoplankton species, including many harmful algal bloom (HAB) species, survive long periods between blooms through formation of benthic resting stages. Because they are crucial to the persistence of these species and the initiation of new blooms, the physiology of benthic stages must be considered to accurately predict responses to climate warming and associated environmental changes. The benthic stages of dinoflagellates, called resting cysts, germinate in response to the combination of favorable temperature, oxygen-availability, and release from dormancy. The latter is a mechanism that prevents germination even when oxygen and temperature conditions are favorable. Here, evidence of temperature-mediated control of dormancy duration from the dinoflagellates Alexandrium catenella and Pyrodinium bahamense-two HAB species that cause paralytic shellfish poisoning (PSP)-is reviewed and presented alongside new evidence of complementary, temperature-based control of cyst quiescence (the state in which cysts germinate on exposure to favorable conditions). Interaction of the two temperature-based mechanisms with climate is explored through a simple model parameterized using results from recent experiments with A. catenella. Simulations demonstrate the importance of seasonal temperature cycles for the synchronization of cysts' release from dormancy and are consistent with biogeography-based inferences that A. catenella is more tolerant of warming in habitats that experience a larger range of seasonal temperature variation (i.e., have higher temperature seasonality). Temperature seasonality is much greater in shallow, long-residence time habitats than in deep, open-water ones. As warming shifts species' ranges, cyst beds may persist longer in more seasonally variable, shallow inshore habitats than in deep offshore ones, promoting HABs that are more localized and commence earlier each year. Recent field investigations of A. catenella also point to the importance of new cyst formation as a factor triggering bloom termination through mass sexual induction. In areas where temperature seasonality restricts the flux of new swimming cells (germlings) to narrow temporal windows, warming is unlikely to promote longer and more intense HAB impacts even when water column conditions would otherwise promote prolonged bloom development. Many species likely have a strong drive to sexually differentiate and produce new cysts once concentrations reach levels that are conducive to new cyst formation. This phenomenon can impose a limit to bloom intensification and suggests an important role for cyst bed quiescence in determining the duration of HAB risk periods.	[Brosnahan, Michael L.; Anderson, Donald M.] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA; [Fischer, Alexis D.] Univ Calif Santa Cruz, Ocean Sci Dept, Santa Cruz, CA 95064 USA; [Lopez, Cary B.] Florida Fish & Wildlife Conservat Commiss, Fish & Wildlife Res Inst, St Petersburg, FL USA; [Moore, Stephanie K.] NOAA, Environm & Fisheries Sci Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, Seattle, WA USA	Woods Hole Oceanographic Institution; University of California System; University of California Santa Cruz; Florida Fish & Wildlife Conservation Commission; National Oceanic Atmospheric Admin (NOAA) - USA	Brosnahan, ML (通讯作者)，Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA.	mbrosnahan@whoi.edu	Fischer, Alexis/M-4531-2019; Cloern, James/C-1499-2011	Brosnahan, Michael/0000-0002-2620-7638; Lopez, Cary/0000-0002-4529-401X	Woods Hole Center for Oceans and Human Health (National Science Foundation) [OCE-0430724, OCE-0911031, OCE-1314642, OCE-1840381]; Woods Hole Center for Oceans and Human Health (National Institutes of Health) [NIEHS-1P50-ES021923-01, POlES028938]; Woods Hole Sea Grant [NA14OAR4170074, R/P-84]; MIT Sea Grant [NA140AR4170077]; National Park Service (NPS) [H238015504]; Florida Fish and Wildlife Conservation Commission; Tampa Bay Environmental Restoration Fund (2015 award); National Marine Fisheries Service Center, National Marine Fisheries Service	Woods Hole Center for Oceans and Human Health (National Science Foundation); Woods Hole Center for Oceans and Human Health (National Institutes of Health)(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH Division of Research Services (DRS)); Woods Hole Sea Grant; MIT Sea Grant; National Park Service (NPS); Florida Fish and Wildlife Conservation Commission; Tampa Bay Environmental Restoration Fund (2015 award); National Marine Fisheries Service Center, National Marine Fisheries Service	We thank David Kulis and Jane Lewis for technical assistance and helpful discussions during the development of this work and Brian Bill and Linda Rhodes for critical feedback on an earlier version of the manuscript. We also gratefully acknowledge support to MLB, ADF, and DMA through the Woods Hole Center for Oceans and Human Health (National Science Foundation grants OCE-0430724, OCE-0911031, OCE-1314642, and OCE-1840381 and National Institutes of Health grants NIEHS-1P50-ES021923-01 and POlES028938), to MLB and DMA through Woods Hole Sea Grant (NA14OAR4170074, R/P-84), MIT Sea Grant (NA140AR4170077) and National Park Service (NPS) Cooperative Agreement H238015504. 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J	Trainer, VL; Moore, SK; Hallegraeff, G; Kudela, RM; Clement, A; Mardones, JI; Cochlan, WP				Trainer, Vera L.; Moore, Stephanie K.; Hallegraeff, Gustaaf; Kudela, Raphael M.; Clement, Alejandro; Mardones, Jorge I.; Cochlan, William P.			Pelagic harmful algal blooms and climate change: Lessons from nature's experiments with extremes	HARMFUL ALGAE			English	Article						Harmful algal blooms; Pelagic; Climate change; Time series; Extreme events	DIATOM PSEUDO-NITZSCHIA; DE-FUCA EDDY; DOMOIC ACID; PARALYTIC SHELLFISH; EL-NINO; DINOFLAGELLATE BLOOMS; PHYTOPLANKTON BIOMASS; MONTEREY BAY; LONG-TERM; CALIFORNIA	Time series now have sufficient duration to determine harmful algal bloom (HAB) responses to changing climate conditions, including warming, stratification intensity, freshwater inputs and natural patterns of climate variability, such as the El Nino Southern Oscillation and Pacific Decadal Oscillation. Against the context of time series, such as those available from phytoplankton monitoring, dinoflagellate cyst records, the Continuous Plankton Recorder surveys, and shellfish toxin records, it is possible to identify extreme events that are significant departures from long-term means. Extreme weather events can mimic future climate conditions and provide a "dress rehearsal" for understanding future frequency, intensity and geographic extent of HABs. Three case studies of extreme HAB events are described in detail to explore the drivers and impacts of these oceanic outliers that may become more common in the future. One example is the chain-forming diatom of the genus Pseudo-nilzschia in the U.S. Pacific Northwest and its response to the 2014-16 northeast Pacific marine heat wave. The other two case studies are pelagic flagellates. Highly potent Alexandrium catenella group 1 dinoflagellate blooms (up to 150 mg/kg PST in mussels; 4 human poisonings) during 2012-17 created havoc for the seafood industry in Tasmania, south-eastern Australia, in a poorly monitored area where such problems were previously unknown. Early evidence suggests that changes in water column stratification during the cold winterspring season are driving new blooms caused by a previously cryptic species. An expansion of Pseudochattonella cf. verruculosa to the south and A. catenella to the north over the past several years resulted in the convergence of both species to cause the most catastrophic event in the history of the Chilean aquaculture in the austral summer of 2016. Together, these two massive blooms were colloquially known as the "Godzilla-Red tide event", resulting in the largest fish farm mortality ever recorded worldwide, equivalent to an export loss of USD$800 million which when combined with shellfish toxicity, resulted in major social unrest and rioting. Both blooms were linked to the strong El Nino event and the positive phase of the Southern Annular Mode, the latter an indicator of anthropogenic climate change in the southeastern Pacific region. For each of these three examples, representing recent catastrophic events in geographically distinct regions, additional targeted monitoring was employed to improve the understanding of the climate drivers and mechanisms that gave rise to the event and to document the societal response. Scientists must be poised to study future extreme HAB events as these natural experiments provide unique opportunities to define and test multifactorial drivers of blooms.	[Trainer, Vera L.; Moore, Stephanie K.] NOAA, Environm & Fisheries Sci Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, 2725 Montlake Blvd E, Seattle, WA 98112 USA; [Hallegraeff, Gustaaf] Univ Tasmania, Inst Marine & Antarctic Studies, Private Bag 129, Hobart, Tas 7001, Australia; [Kudela, Raphael M.] Univ Calif Santa Cruz, Ocean Sci Dept, Santa Cruz, CA 95064 USA; [Clement, Alejandro] Plancton Andino spA, Lab Puerto Varas, Terraplen 869, Puerto Varas, Chile; [Mardones, Jorge I.] Inst Fomento Pesquero IFOP, Ctr Estudios Algas Nocivas CREAN, Padre Harter 574, Puerto Montt, Chile; [Cochlan, William P.] San Francisco State Univ, Estuary & Ocean Sci Ctr, Romberg Tiburon Campus,3150 Paradise Dr, Tiburon, CA 94920 USA	National Oceanic Atmospheric Admin (NOAA) - USA; University of Tasmania; University of California System; University of California Santa Cruz; Instituto de Fomento Pesquero (Valparaiso); California State University System; San Francisco State University	Trainer, VL (通讯作者)，NOAA, Environm & Fisheries Sci Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, 2725 Montlake Blvd E, Seattle, WA 98112 USA.	vera.l.trainer@noaa.gov	Trainer, Vera/AAE-9306-2022; Hallegraeff, Gustaaf/C-8351-2013	Mardones, Jorge/0000-0003-3160-0415; , Vera/0009-0005-9585-6753; CLEMENT, ALEJANDRO/0009-0006-2495-7087; Hallegraeff, Gustaaf/0000-0001-8464-7343	NOAA National Centers for Coastal Ocean Science Centers for Sponsored Coastal Ocean Research [NA11NOS4780030]; JPB Foundation; JPB Environmental Health Fellowship - JPB Foundation; Australian Government through Fisheries Research and Development Corporation [2014/032]	NOAA National Centers for Coastal Ocean Science Centers for Sponsored Coastal Ocean Research(National Oceanic Atmospheric Admin (NOAA) - USA); JPB Foundation; JPB Environmental Health Fellowship - JPB Foundation; Australian Government through Fisheries Research and Development Corporation(Fisheries R&D Corp)	We thank Dr. Ryan McCabe for kindly providing Fig. 3. This work was supported by grants and emergency response funds from the NOAA National Centers for Coastal Ocean Science Centers for Sponsored Coastal Ocean Research (Internal transfer to V.L.T. and NA11NOS4780030 to R.M.K.), The JPB Foundation, and a JPB Environmental Health Fellowship award granted by The JPB Foundation and managed by the Harvard T. H. Chan School of Public Health. The Tasmanian bloom studies were funded by the Australian Government through Fisheries Research and Development Corporation project 2014/032. This is NOAA ECOHAB publication 932 and Event Response publication 27. 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J	Romeikat, C; Knechtel, J; Gottschling, M				Romeikat, Corinna; Knechtel, Johanna; Gottschling, Marc			Clarifying the taxonomy of <i>Gymnodinium fuscum</i> var. <i>rubrum</i> from Bavaria (Germany) and placing it in a molecular phylogeny of the Gymnodiniaceae (Dinophyceae)	SYSTEMATICS AND BIODIVERSITY			English	Article; Early Access						cyst; dinoflagellate; epitype; morphology; taxonomy	WESTERN KOREA MORPHOLOGY; RIBOSOMAL-RNA; SCRIPPSIELLA-TROCHOIDEA; NOV DINOPHYCEAE; COASTAL WATERS; N. SP.; DINOFLAGELLATE; GEN.; THORACOSPHAERACEAE; PERIDINIALES	The taxonomy of Gymnodinium and the Gymnodiniaceae is inconsistent, because the systematic position of the type species, G. fuscum, is elusive at present. Historical names of microscopic species are frequently ambiguous, making reliable determination difficult, although it is crucial to fully explore the biology of the organisms. We collected material at the type locality of a historical variety, namely Gymnodinium fuscum var. rubrum, var. nov., and established a strain for morphological and molecular studies. The motile cells showed a characteristically obovate shape in outline, with acute antapex, and a horseshoe-shaped apical structure complex, which is characteristic for many Gymnodiniaceae. Older cultivated material further exhibited red granules in the cell, being the name-giving diagnostic character of the variety. In a molecular phylogeny, monophyletic Gymnodiniaceae segregated into seven clades at high taxonomic level. The phylogenetic resolution of the molecular DNA-tree provides evidence for a dynamic evolutionary scenario of Gymnodiniaceae and might prove helpful for an improved classification of the group. As the taxonomic result, we validate and epitypify the historical name, G. fuscum var. rubrum, var. nov., showing diagnostic traits such as a descending (but not straight) cingulum and a reciprocal size ratio between episome and hyposome in comparison to the regular form of G. fuscum.	[Romeikat, Corinna; Knechtel, Johanna; Gottschling, Marc] Ludwig Maximilians Univ Munchen, GeoBioctr, Dept Biol Systemat Bot & Mykol, Menzinger Str 67, D-80638 Munich, Germany	University of Munich	Gottschling, M (通讯作者)，Ludwig Maximilians Univ Munchen, GeoBioctr, Dept Biol Systemat Bot & Mykol, Menzinger Str 67, D-80638 Munich, Germany.	gottschling@bio.lmu.de						Annenkova NV, 2011, PROTIST, V162, P222, DOI 10.1016/j.protis.2010.07.002; Annenkova NV, 2015, ISME J, V9, P1821, DOI 10.1038/ismej.2014.267; [Anonymous], DINOPHYCEAE; [Anonymous], INFUSIONSTHIERCHEN V INFUSIONTHIERCHEN VO; Bauer H, 1972, HEIMATLICHE SCHULE, V3, P37; Baumeister W., 1938, Mikrokosmos Stuttgart, V31, P111; Baumeister W., 1967, ARBEITSSTATTE ERFORS, V5, P1; BAUMEISTER WILLY, 1958, ARCH PROTISTENKUNDE, V102, P258; BAUMEISTER WILLY, 1957, ARCH PROTISTENKUNDE, V102, P1; BHAUD Y, 1988, J CELL SCI, V89, P197; BOURRELLY P, 1970, ALGUES BLEUES ROUGES; Daugbjerg N, 2000, PHYCOLOGIA, V39, P302, DOI 10.2216/i0031-8884-39-4-302.1; DODGE JD, 1969, NEW PHYTOL, V68, P613, DOI 10.1111/j.1469-8137.1969.tb06465.x; Dogiel V., 1906, Mitteilungen aus der Zoologischen Station zu Neapel Berlin, V18, P1; Ehrenberg C. 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Biodivers.	2019 DEC 21	2019										10.1080/14772000.2019.1699197	http://dx.doi.org/10.1080/14772000.2019.1699197		DEC 2019	14	Biodiversity Conservation; Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation; Life Sciences & Biomedicine - Other Topics	JX7XR					2025-03-11	WOS:000503943900001
J	Obrezkova, MS; Pospelova, VY				Obrezkova, M. S.; Pospelova, V. Yu.			Distribution of Diatoms and Dinocysts in Surface Sediments from the East Siberian and Chukchi Seas	PALEONTOLOGICAL JOURNAL			English	Article						diatoms; dinoflagellate cysts; surface sediments; East Siberian Sea; Chukchi Sea		Surface sediment samples from the East Siberian and Chukchi seas have been analyzed for the quantitative distribution, taxonomic composition, and ecological structure of diatom and dinoflagellate cyst assemblages. According to the results, the diatom and dinocyst distribution in surface sediments indicates the distribution of different water masses in the region.	[Obrezkova, M. S.] Russian Acad Sci, Ilichev Pacific Oceanol Inst, Far Eastern Branch, Vladivostok 690041, Russia; [Pospelova, V. Yu.] Univ Victoria, Victoria, BC, Canada	Russian Academy of Sciences; University of Victoria	Obrezkova, MS (通讯作者)，Russian Acad Sci, Ilichev Pacific Oceanol Inst, Far Eastern Branch, Vladivostok 690041, Russia.; Pospelova, VY (通讯作者)，Univ Victoria, Victoria, BC, Canada.	obrezkova@poi.dvo.ru; vpospe@uvic.ca	Obrezkova, Mariia/J-9869-2015	Obrezkova, Mariia/0000-0002-5884-5001; Pospelova, Vera/0000-0003-4049-8133	Russian Foundation for Basic Research [18-05-60104, 18-35-00384 mol_a];  [AAAA-A17-117030110033-0]	Russian Foundation for Basic Research(Russian Foundation for Basic Research (RFBR)Spanish Government); 	The study was financially supported by the Russian Foundation for Basic Research within the framework of the research project no. 18-05-60104 Arctic and the governmental assignment to the Il'ichev Pacific Oceanological Institute, Far East Branch, Russian Academy of Sciences (no. AAAA-A17-117030110033-0). Technical processing of samples and slide preparation for diatom analysis was performed by L.V. Osipova and supported in part by the Russian Foundation for Basic Research (project no. 18-35-00384 mol_a).	[Anonymous], 1974, DIATOMOVYE VODOROSLI, V1; [Астахов Анатолий Сергеевич Astakhov A.S.], 2013, [Геология и геофизика, Geologiya i geofizika], V54, P1348; Astakhov AS, 2015, OCEANOGRAPHY, V28, P190, DOI 10.5670/oceanog.2015.65; Dumanskaya I.O, 2017, LEDOVYE USLOVIYA MOR; Grebmeier JM, 2006, PROG OCEANOGR, V71, P331, DOI 10.1016/j.pocean.2006.10.001; Gusev EA, 2014, OCEANOLOGY+, V54, P465, DOI 10.1134/S0001437014030011; Hunt GL, 2013, J MARINE SYST, V109, P43, DOI 10.1016/j.jmarsys.2012.08.003; Klyuvitkina T.S., 2016, VSER NAUCHN K POSV P, P135; Mertens KN, 2012, REV PALAEOBOT PALYNO, V184, P74, DOI 10.1016/j.revpalbo.2012.06.012; Obrezkova MS, 2014, RUSS J MAR BIOL+, V40, P465, DOI 10.1134/S1063074014060170; Polyakova E.I, 1997, ARKTICHESKIE MORYA E; Pospelova V, 2010, MAR MICROPALEONTOL, V75, P17, DOI 10.1016/j.marmicro.2010.02.003; Radi T, 2001, J QUATERNARY SCI, V16, P667, DOI 10.1002/jqs.652; Stein R, 2017, J QUATERNARY SCI, V32, P362, DOI 10.1002/jqs.2929; STOCKMARR J, 1971, Pollen et Spores, V13, P615; Vologina EG, 2016, DOKL EARTH SCI, V469, P841, DOI 10.1134/S1028334X16080183; WALL D, 1966, NATURE, V211, P1025, DOI 10.1038/2111025a0; Zonneveld KAF, 2013, REV PALAEOBOT PALYNO, V191, P1, DOI 10.1016/j.revpalbo.2012.08.003	18	6	7	3	11	PLEIADES PUBLISHING INC	MOSCOW	PLEIADES PUBLISHING INC, MOSCOW, 00000, RUSSIA	0031-0301	1555-6174		PALEONTOL J+	Paleontol. J.	DEC	2019	53	8					790	794		10.1134/S0031030119080148	http://dx.doi.org/10.1134/S0031030119080148			5	Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Paleontology	KU1JQ					2025-03-11	WOS:000519466400006
J	Dungca-Santos, JCR; Caspe, FJO; Tablizo, FA; Purganan, DJE; Azanza, RV; Onda, DFL				Dungca-Santos, Jenelle Clarisse R.; Caspe, Frenchly Joyce O.; Tablizo, Francis A.; Purganan, Daniel John E.; Azanza, Rhodora V.; Onda, Deo Florence L.			Algicidal potential of cultivable bacteria from pelagic waters against the toxic dinoflagellate <i>Pyrodinium bahamense</i> (Dinophyceae)	JOURNAL OF APPLIED PHYCOLOGY			English	Article						Bacteria-algal interaction; Algicidal bacteria; Harmful algal blooms (HABs); Pyrodinium bahamense	RED TIDE PHYTOPLANKTON; LIFE-HISTORY; ALGAL BLOOM; SP NOV.; MARINE BACTERIUM; VAR. COMPRESSUM; FISH KILL; HETEROCAPSA-CIRCULARISQUAMA; GYMNODINIUM-MIKIMOTOI; POPULATION-DYNAMICS	Associated and algicidal bacteria play roles in the succession and decline of phytoplankton blooms, including those of harmful algal bloom(HAB)-forming species. Limited studies on HAB-associated bacterial ecology have resulted in our incomplete understanding of HABs dynamics. Diverse phytoplankton-bacterial interactions have also led to studies on their potential as biocontrol tools for HABs mitigation. Here, we tested 48 cultivable pelagic bacteria from three HAB-affected areas in the Philippines (Bolinao, Sorsogon, and Matarinao) against non-axenic cultures of the toxic, thecate dinoflagellate Pyrodinium bahamense. Co-incubation with live cultures of these isolates exhibited varying levels of algicidal activities suggesting that it may not be a phylogenetically conserved property. Furthermore, majority of the isolates elicited activity against the thecate test species P. bahamense, which was not present in the area where the bacteria were isolated, implying non-specificity of action. Exposure to bacterial cells resulted in Pyrodinium pellicle cyst formation. Despite this, however, cell lysis and decline in total cell abundance were still observed, indicating strong algicidal potency of the isolates. In depth understanding of the interplay between environmental factors and algicidal bacteria-microalgal interactions may provide significant insights on the management of HABs.	[Dungca-Santos, Jenelle Clarisse R.; Caspe, Frenchly Joyce O.; Tablizo, Francis A.; Purganan, Daniel John E.; Azanza, Rhodora V.; Onda, Deo Florence L.] Univ Philippines, Coll Sci, Marine Sci Inst, Quezon City 1101, Philippines; [Tablizo, Francis A.] Univ Philippines, Philippine Genome Ctr, Quezon City 1101, Philippines; [Azanza, Rhodora V.] Natl Acad Sci & Technol, Dept Sci & Technol, 3-F,Sci Heritage Bldg,DOST Complex,Gen Santos Ave, Taguig City 4044, Philippines	University of the Philippines System; University of the Philippines Diliman; University of the Philippines System; University of the Philippines Diliman; Department of Science & Technology (DOST), Philippines	Onda, DFL (通讯作者)，Univ Philippines, Coll Sci, Marine Sci Inst, Quezon City 1101, Philippines.	dfonda@msi.upd.edu.ph	Azanza, Rhodora/HGU-5811-2022		Department of Science Technology (DOST) through the Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (PCAARRD); MSI in-house grant	Department of Science Technology (DOST) through the Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (PCAARRD)(Department of Science & Technology (DOST), Philippines); MSI in-house grant	PhilHABs Project 2 and HAB Genomics Project 1 were funded and supported by the Department of Science Technology (DOST) through the Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (PCAARRD). 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Appl. Phycol.	DEC	2019	31	6					3721	3735		10.1007/s10811-019-01839-0	http://dx.doi.org/10.1007/s10811-019-01839-0			15	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	KD1OP					2025-03-11	WOS:000507642200035
J	Tas, S				Tas, Seyfettin			Microalgal blooms in a eutrophic estuary (Golden Horn, Sea of Marmara) following a remediation effort	BOTANICA MARINA			English	Article						estuary; Golden Horn; HABs; phytoplankton; Sea of Marmara	HARMFUL ALGAL BLOOMS; PSEUDO-NITZSCHIA; RED TIDE; PHYTOPLANKTON SUCCESSION; CYST FORMATION; DOMOIC ACID; DINOPHYCEAE; GROWTH; SCRIPPSIELLA; COMMUNITY	The present work describes microalgal blooms that occurred in a eutrophic estuary (Golden Horn, Sea of Marmara, Turkey) between October 2013 and September 2014 following a remediation effort. The relationships between bloom-forming microalgal species and environmental factors were investigated during the study period. The changing environmental conditions (e.g. increasing water transparency and salinity) after seawater transfer to the Golden Horn Estuary stimulated phytoplankton growth with dense algal blooms. Annual average values of Secchi depth, salinity and dissolved oxygen increased in comparison with those in an earlier study in 2009-2010. Nine microalgal species, which consisted of four diatoms, two dinoflagellates, one cryptophycean, one raphidophycean and one euglenophycean, formed the blooms with water discolorations during spring and summer. The species that reached the highest bloom density were Plagioselmis prolonga (62.4 x 10(6) cells l(-1)) among crytophyceans, Heterocapsa triquetra (21.8 x10(6) cells l(-)(1)) among dinoflagellates and Skeletonema marinoi (39 x10( )(6)cells l(-1)) among diatoms. The abundance of dinoflagellates and phytoflagellates increased particularly in the upper estuary when compared to diatoms and their rapid growth and bloom formation revealed that they have a wide range of tolerance to changing environmental conditions and a strong ability to compete with other species in this study area.	[Tas, Seyfettin] Istanbul Univ, Inst Marine Sci & Management, TR-34134 Istanbul, Turkey	Istanbul University	Tas, S (通讯作者)，Istanbul Univ, Inst Marine Sci & Management, TR-34134 Istanbul, Turkey.	stas@istanbul.edu.tr	Tas, Seyfettin/AAC-5594-2020		Scientific and Technological Research Council of Turkey [TUBITAK-113Y091]	Scientific and Technological Research Council of Turkey(Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK))	The author wishes to thank Dr. Ahsen Yuksek for nutrient data, Dr. Fuat Dursun, scholarship -student Turgay Durmus and technician Sezgin Camurcu for their efforts in field and laboratory during this project. This work was supported by the Scientific and Technological Research Council of Turkey (grant no.: TUBITAK-113Y091, Funder Id: http://dx.doi.org/10.13039/501100004410).	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Marina	DEC	2019	62	6					537	547		10.1515/bot-2019-0035	http://dx.doi.org/10.1515/bot-2019-0035			11	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	JU9SF					2025-03-11	WOS:000502006800002
J	Meng, FQ; Song, JT; Zhou, J; Cai, ZH				Meng, Fan-Qiang; Song, Jun-Ting; Zhou, Jin; Cai, Zhong-Hua			Transcriptomic Profile and Sexual Reproduction-Relevant Genes of <i>Alexandrium minutum</i> in Response to Nutritional Deficiency	FRONTIERS IN MICROBIOLOGY			English	Article						marine dinoflagellates; transcriptome; Alexandrium minutum; nutrient limitation; mixotrophic; sexual reproduction; response mechanisms	TOXIN PRODUCTION; CYST PRODUCTION; LIFE-CYCLES; DINOFLAGELLATE; NITROGEN; GROWTH; DINOPHYCEAE; CATENELLA; NITRATE; GENOME	Alexandrium minutum is a typical marine toxic dinoflagellate responsible for producing paralytic shellfish poisoning (PSP) toxins. Until now, we know little about the genomic information of A. minutum, so a transcriptome study was conducted to clarify the physiological adaptations related to nutritional deficiency. Here, we performed RNA-Seq analysis to assess the gene expression patterns of A. minutum under N and P deficient conditions for 0 (control), 6, and 72 h. Main differences between the control and experimental groups were observed in hydrolase activity and fatty acid, lipid, protein, and P metabolism. Activities of photosystem I (PSI) and PSII were significantly down-regulated, and the endocytosis pathway (clathrin-dependent endocytosis) was significantly enriched under N and P stress compared with the control, indicating that A. minutum shifts its trophy pattern under N and P stress. We also identified several unigenes related to the process of sexual reproduction, including sex determination, sperm-egg recognition, sex differentiation, mating, and fertilization. Approximately 50% of the successfully annotated unigenes were differentially expressed between the short-term stimulated sample (6 h) and control (R). However, the expression level of most unigenes returned to normal levels after 72 h, indicating that N and P stress plays a limited role in the induction of sexual reproduction. Furthermore, the quantitative real-time PCR (qRT-PCR) results of the five representative sex-related unigenes were consistent with sequencing data, which confirmed the authenticity of transcriptomic analysis. Also, qRT-PCR analysis showed that the long and short form transcripts of the saxitoxin biosynthesis gene (sxtA) were down-regulated under the nutrient deficient condition compared with the control, indicating that N and P stress regulates sxtA expression. Overall, transcriptome analysis of A. minutum revealed that N and P deficiency induced responses associated with stress response, photosynthetic efficiency, toxin biosynthesis, and sexual reproduction. Our data indicate that algae change their trophic modes (to facultative mixotrophy) and related physiological reactions under stress conditions; this possibly represents an ecological adaption strategy in the algal life cycle.	[Meng, Fan-Qiang; Song, Jun-Ting] Tsinghua Univ, Sch Life Sci, Beijing, Peoples R China; [Meng, Fan-Qiang; Song, Jun-Ting; Zhou, Jin; Cai, Zhong-Hua] Tsinghua Univ, Shenzhen Publ Platform Screening & Applicat Marin, Shenzhen Int Grad Sch, Shenzhen, Peoples R China	Tsinghua University; Tsinghua University	Cai, ZH (通讯作者)，Tsinghua Univ, Shenzhen Publ Platform Screening & Applicat Marin, Shenzhen Int Grad Sch, Shenzhen, Peoples R China.	caizh@sz.tsinghua.edu.cn	Zhou, Jin/A-9889-2019	cai, zhonghua/0000-0002-3582-1664	NSFC [41976126]; Trade and Information Commission of Shenzhen [20180124 085935704]; S&T Projects of Shenzhen Science and Technology Innovation Committee [JCYJ20170412171959157, JCYJ20170817160708491]	NSFC(National Natural Science Foundation of China (NSFC)); Trade and Information Commission of Shenzhen; S&T Projects of Shenzhen Science and Technology Innovation Committee	This work was supported by the NSFC (41976126), the Trade and Information Commission of Shenzhen (20180124 085935704), and the S&T Projects of Shenzhen Science and Technology Innovation Committee (JCYJ20170412171959157 and JCYJ20170817160708491).	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Microbiol.	NOV 19	2019	10								2629	10.3389/fmicb.2019.02629	http://dx.doi.org/10.3389/fmicb.2019.02629			16	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	OM2NV	31803162	Green Published, gold			2025-03-11	WOS:000585864800001
J	Liu, YY; Hu, ZX; Deng, YY; Tang, YZ				Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong			Evidence for Production of Sexual Resting Cysts by the Toxic Dinoflagellate <i>Karenia mikimotoi</i> in Clonal Cultures and Marine Sediments	JOURNAL OF PHYCOLOGY			English	Article						fluorescence in situ hybridization; harmful algal blooms (HABs); Karenia mikimotoi; life cycle (history); resting cyst	RED TIDE DINOFLAGELLATE; IN-SITU HYBRIDIZATION; BALLAST WATER; COCHLODINIUM-POLYKRIKOIDES; GREEN AUTOFLUORESCENCE; GYMNODINIUM-MIKIMOTOI; GONYAULAX-TAMARENSIS; GYRODINIUM-AUREOLUM; BLOOM; DINOPHYCEAE	The toxic dinoflagellate Karenia mikimotoi has been well-known for causing large-scale and dense harmful algal blooms (HABs) in coastal waters worldwide and serious economic loss in aquaculture and fisheries and other adverse effects on marine ecosystems. Whether K. mikimotoi forms resting cysts has been a puzzling issue regarding to the mechanisms of bloom initiation and geographic expansion of this species. We provide morphological and molecular confirmation of sexually produced thin-walled resting cysts by K. mikimotoi based on observations of laboratory cultures and their direct detection in marine sediments. Light and scanning electron microscopy evidences for sexual reproduction include attraction and pairing of gametes, gamete fusion, formation of planozygote and thin-walled cyst, and the documentation of the thin-walled cyst germination processes. Evidence for cysts in marine sediments was in three aspects: positive PCR detection of cysts using species-specific primers in the DNA extracted from whole sediments; fluorescence in situ hybridization detection of cysts using FISH probes; and single-cell PCR sequencing for cysts positively labeled with FISH probes. The existence of sexually produced, thin-walled resting cysts by K. mikimotoi provides a possible mechanism accounting for the initiation of annually recurring blooms at certain regions and global expansion of the species during the past decades.	[Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China; [Liu, Yuyang; Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China; [Liu, Yuyang] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Hu, Zhangxi; Deng, Yunyan; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Li, Yang/KFB-5350-2024	Hu, Zhangxi/0000-0002-4742-4973				ANDERSON DM, 1989, ICLARM CONT, V21, P81; ANDERSON DM, 1978, J PHYCOL, V14, P224, DOI 10.1111/j.1529-8817.1978.tb02452.x; ANDERSON DM, 1979, ESTUAR COAST MAR SCI, V8, P279, DOI 10.1016/0302-3524(79)90098-7; Bolch CJS, 1997, PHYCOLOGIA, V36, P472, DOI 10.2216/i0031-8884-36-6-472.1; Bolch CJS, 2007, HARMFUL ALGAE, V6, P465, DOI 10.1016/j.hal.2006.12.008; BOLCH CJ, 1990, BOT MAR, V33, P173, DOI 10.1515/botm.1990.33.2.173; Brand LE, 2012, HARMFUL ALGAE, V14, P156, DOI 10.1016/j.hal.2011.10.020; Bravo Isabel, 2014, Microorganisms, V2, P11; Brosnahan ML, 2017, LIMNOL OCEANOGR, V62, P2829, DOI 10.1002/lno.10664; Butrón A, 2011, MAR POLLUT BULL, V62, P747, DOI 10.1016/j.marpolbul.2011.01.008; Carstensen J, 2004, LIMNOL OCEANOGR, V49, P191, DOI 10.4319/lo.2004.49.1.0191; D'Silva MS, 2012, NAT HAZARDS, V63, P1225, DOI 10.1007/s11069-012-0190-9; Dale B., 1983, P69; Davidson K, 2009, HARMFUL ALGAE, V8, P349, DOI 10.1016/j.hal.2008.07.007; Figueroa RI, 2005, J PHYCOL, V41, P370, DOI 10.1111/j.1529-8817.2005.04150.x; Figueroa RI, 2005, J PHYCOL, V41, P74, DOI 10.1111/j.1529-8817.2005.04045.x; Gentien P, 2007, PHILOS T R SOC B, V362, P1937, DOI 10.1098/rstb.2007.2079; Gentien P., 1998, NATO ASI Series Series G Ecological Sciences, V41, P155; Gillibrand PA, 2016, HARMFUL ALGAE, V53, P118, DOI 10.1016/j.hal.2015.11.011; Guillard R. 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FEB	2020	56	1					121	134		10.1111/jpy.12925	http://dx.doi.org/10.1111/jpy.12925		NOV 2019	14	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	KL3AD	31560797				2025-03-11	WOS:000493785200001
J	Orlova, TY; Morozova, TV				Orlova, T. Yu.; Morozova, T. V.			Dinoflagellate Cysts of the Genus <i>Alexandrium</i> Halim, 1960 (Dinophyceae: Gonyaulacales) in Recent Sediments from the Northwestern Pacific Ocean	RUSSIAN JOURNAL OF MARINE BIOLOGY			English	Article						cysts; dinoflagellates; Alexandrium; paralytic shellfish poisoning; Far Eastern seas of Russia; northwestern Pacific Ocean	RECENT MARINE-SEDIMENTS; SETO-INLAND-SEA; RESTING CYSTS; COASTAL WATERS; TAMARENSE DINOPHYCEAE; SURFACE SEDIMENTS; TOXIN COMPOSITION; NORTHERN JAPAN; EAST-COAST; YELLOW SEA	This paper summarizes information on the resting cysts of the dinoflagellate genus Alexandrium Halim, 1960 from the northwestern Pacific Ocean and the Chukchi Sea. Species of the genus Alexandrium, which are known as producers of paralytic toxins, cause large-scale algal blooms that pose a serious threat to marine coastal ecosystems and human health. Data are presented on the diversity, abundance, and distribution of Alexandrium spp. cysts in the Far Eastern seas of Russia and adjacent waters. The possible role of resting cysts in initiating toxic blooms of Alexandrium spp. is discussed.	[Orlova, T. Yu.; Morozova, T. V.] Russian Acad Sci, Far East Branch, Zhirmunsky Natl Sci Ctr Marine Biol, Vladivostok 690041, Russia	Russian Academy of Sciences; National Scientific Center of Marine Biology, Far East Branch of the Russian Academy of Sciences	Morozova, TV (通讯作者)，Russian Acad Sci, Far East Branch, Zhirmunsky Natl Sci Ctr Marine Biol, Vladivostok 690041, Russia.	tatiana_morozova@mail.ru	Morozova, Tatiana/G-4468-2018; Orlova, Tatiana/AAU-8448-2020	Orlova, Tatiana/0000-0002-5246-6967	"Far East" program [18-5-074]	"Far East" program	This research was financially supported by the "Far East" program, project no. 18-5-074.	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J. Mar. Biol.	NOV	2019	45	6					397	407		10.1134/S1063074019060075	http://dx.doi.org/10.1134/S1063074019060075			11	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	KK5HQ					2025-03-11	WOS:000512773200001
J	de Lima, DT; Moser, GAO; Piedras, FR; da Cunha, LC; Tenenbaum, DR; Tenório, MMB; de Campos, MVPB; Cornejo, TD; Barrera-Alba, JJ				de Lima, Domenica Teixeira; Oliveira Moser, Gleyci Aparecida; Piedras, Fernanda Reinhardt; da Cunha, Leticia Cotrim; Tenenbaum, Denise Rivera; Barboza Tenorio, Marcio Murilo; Pereira Borges de Campos, Marcos Vinicius; Cornejo, Thais de Oliveira; Barrera-Alba, Jose Juan			Abiotic Changes Driving Microphytoplankton Functional Diversity in Admiralty Bay, King George Island (Antarctica)	FRONTIERS IN MARINE SCIENCE			English	Article						functional diversity; microphytoplankton; Antarctic; abiotic variation; meltwater	PHYTOPLANKTON RESTING STAGES; NORTHERN MARGUERITE BAY; EUPHAUSIA-SUPERBA DANA; SOUTH-SHETLAND ISLANDS; SHALLOW COASTAL ZONE; COMMUNITY ECOLOGY; CLIMATE-CHANGE; SEA-ICE; INTERANNUAL VARIABILITY; LATE SUMMER	Environmental gradients can provide habitat-specific scenarios for community functional diversity (FD) that determine the composition of populations on both spatial and temporal scales. The western shelf of the Antarctic Peninsula has experiencing increasing air temperatures while the climate is transitioning to a warm-humid sub-Antarctic-type of climate. As a consequence, abiotic changes are leading to alterations in the trophic web. Microphytoplankton FD was analyzed across environmental gradients of sea surface temperature, salinity, meltwater percentage and nutrient availability in Admiralty Bay, South Shetland Islands, Western Antarctic Peninsula. Samples were collected during the austral summer from 2009 to 2011 and from 2013 to 2015, at Admiralty Bay for which FD indices were calculated based on species traits. The amount of meltwater (MW) present in Admiralty Bay groups microphytoplankton into communities according to physiological and ecological tolerances, thus leading to a greater FD. When meltwater dominated the bay (>2.25% MW scenarios iii - 2013-14 and iv - 2014-15), diatoms and dinoflagellates were codominant. An increase in the dinoflagellate fraction of microplankton, notably with auxotrophic and mixotrophic nutrition mode, can be considered a trigger for changes in the structure of the Antarctic food web. Our results suggest using Admiralty Bay as a model for studies on changes in microphytoplankton community composition and FD.	[de Lima, Domenica Teixeira; Oliveira Moser, Gleyci Aparecida; Piedras, Fernanda Reinhardt] Univ Estado Rio De Janeiro, Fac Oceanog, Dept Oceanog Biol, Lab Ecol & Cult Fitoplancton Marinho, Rio De Janeiro, Brazil; [da Cunha, Leticia Cotrim] Univ Estado Rio De Janeiro, Fac Oceanog, Dept Oceanog Quim, Lab Oceanog Quim, Rio De Janeiro, Brazil; [da Cunha, Leticia Cotrim] Brazilian Ocean Acidificat Network, Rio Grande, Brazil; [Tenenbaum, Denise Rivera; Barboza Tenorio, Marcio Murilo] Univ Fed Rio De Janeiro, Inst Biol, Rio De Janeiro, Brazil; [Pereira Borges de Campos, Marcos Vinicius; Cornejo, Thais de Oliveira; Barrera-Alba, Jose Juan] Univ Fed Sao Paulo, Dept Ciencias Mar, Inst Mar, Santos, Brazil	Universidade do Estado do Rio de Janeiro; Universidade do Estado do Rio de Janeiro; Universidade Federal do Rio de Janeiro; Universidade Federal de Sao Paulo (UNIFESP)	Moser, GAO (通讯作者)，Univ Estado Rio De Janeiro, Fac Oceanog, Dept Oceanog Biol, Lab Ecol & Cult Fitoplancton Marinho, Rio De Janeiro, Brazil.	gleycimoser@gmail.com	Moser, Gleyci A./ABA-4395-2021; Moser, Gleyci A./LDG-6977-2024; Cotrim da Cunha, Leticia/F-5732-2010	Moser, Gleyci A./0000-0003-3773-2400; Cotrim da Cunha, Leticia/0000-0001-8035-1430	National Council for Research and Development (CNPq) [574018/2008-5]; Research Support Foundation of the State of Rio de Janeiro (FAPERJ) [E-16/170.023/2008]	National Council for Research and Development (CNPq)(Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPQ)); Research Support Foundation of the State of Rio de Janeiro (FAPERJ)(Fundacao Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio De Janeiro (FAPERJ))	This work integrates the National Institute of Science and Technology Antarctic Environmental Research (INCT-APA), which receives scientific and financial support from the National Council for Research and Development (CNPq Grant No. 574018/2008-5) and the Research Support Foundation of the State of Rio de Janeiro (FAPERJ Grant No. E-16/170.023/2008).	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Mar. Sci.	OCT 17	2019	6								638	10.3389/fmars.2019.00638	http://dx.doi.org/10.3389/fmars.2019.00638			17	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	JE5OY		gold			2025-03-11	WOS:000490743000001
J	Rodrigues, RV; Patil, JS; Sathish, K; Anil, AC				Rodrigues, R., V; Patil, J. S.; Sathish, K.; Anil, A. C.			Dinoflagellate planktonic-motile-stage and benthic-cyst assemblages from a monsoon-influenced tropical harbour: Elucidating the role of environmental conditions	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Dinoflagellates; Cysts; Motile-stages; Environmental indicators; Eutrophic-estuarine harbour; Monsoon	ESTUARY COCHIN BACKWATERS; RECENT MARINE-SEDIMENTS; HARMFUL ALGAL BLOOMS; WEST-COAST; EAST-COAST; SOUTHWEST COAST; WATER-QUALITY; SPATIAL-DISTRIBUTION; SURFACE SEDIMENTS; TROPHIC STATUS	Dinoflagellates are referred among potential bioinvaders and environmental proxies. Information from tropical regions on the coupling of cyst and motile stages of dinoflagellates characterized by high suspended-load, and high diversity but low abundance is limited. Here, the population dynamics of dinoflagellates (planktonic-motile-stages and benthic-cysts) from monsoon-influenced Cochin-harbour, southwest coast of India was investigated. A targeted sampling strategy is proposed over conventional methods to obtain better estimates of abundance and diversity. From the water column, the cyst-producing-dinoflagellates contribution was quantified for the first time, and it was up to 52% of total planktonic-motile-stages. Interestingly, the number of motile stages versus the number of cysts for heterotrophs revealed an inverse trend and the explanation is not straightforward. This is because Cochin-harbour experiences discharges, i.e., freshwater (peak during monsoon), anthropogenic, and dredging activities throughout the year facilitating benthic-suspension, high sedimentation rate, and distinct seasonality in the availability of prey. In such an environment, motile-stages-diversity and cysts-species-richness formed potential environmental proxies. The presence of cysts of indicator taxa (Protoperidiniwn, Polykrikos, Lingulodinium) for nutrient-enrichment in relatively good proportions and low ranges of motile-stages diversity and cysts species-richness do signal eutrophic system. Autotrophic-cysts dominance illustrates that the heterotrophs need not be dominant in the eutrophic-system as reported in earlier studies. The dominance of euryhaline dinoflagellates (Gonyauhne spinifera, Protoperidiniwn pentagonum, P. leonis, Pyrophacus steinii) cysts provided additional information on cyst-producing-dinoflagellates as potential environmental indicators. The existence of 24 morphotypes belonging to potentially harmful-algal-bloom (HAB) species emphasizes HAB risks under favorable conditions.	[Rodrigues, R., V; Patil, J. S.; Sathish, K.; Anil, A. C.] Natl Inst Oceanog, CSIR, Panaji 403004, Goa, India	Council of Scientific & Industrial Research (CSIR) - India; CSIR - National Institute of Oceanography (NIO)	Patil, JS (通讯作者)，Natl Inst Oceanog, CSIR, Panaji 403004, Goa, India.	patilj@nio.org		Krishnan, Sathish/0009-0003-3905-871X	DG Shipping, Ministry of Shipping, Govt. of India [GAP 2429]; UGC, India	DG Shipping, Ministry of Shipping, Govt. of India; UGC, India(University Grants Commission, India)	We are grateful to the Director of CSIR National Institute of Oceanography for his support and encouragement. This work was supported by DG Shipping, Ministry of Shipping, Govt. of India funded project Ballast Water Management Program India -BAMPI (GAP 2429). We thank Dr. S.S. Sawant, Dr. D. Desai and Mr. K. Venkat for co-ordinating Port Biological Baseline Survey (PBBS) at Cochin harbour under the above project and the project staff, who were involved in the PBBS, for their help during sampling. 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Coast. Shelf Sci.	OCT 15	2019	226								106253	10.1016/j.ecss.2019.106253	http://dx.doi.org/10.1016/j.ecss.2019.106253			14	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	IS9VJ					2025-03-11	WOS:000482495700004
J	Kraberg, A; Kieb, U; Peters, S; Wiltshire, KH				Kraberg, Alexandra; Kieb, Ute; Peters, Silvia; Wiltshire, Karen Helen			An updated phytoplankton check-list for the Helgoland Roads time series station with eleven new records of diatoms and dinoflagellates	HELGOLAND MARINE RESEARCH			English	Article						Biodiversity; Helgoland transects; Helgoland Roads; New records; North Sea; Climate change; Long-term monitoring	ALEXANDRIUM-OSTENFELDII DINOPHYCEAE; PSEUDO-NITZSCHIA PERAGALLO; NORTH-SEA; PLANKTONIC DIATOMS; MARINE DIATOM; QUODDY REGION; GERMAN BIGHT; BACILLARIOPHYCEAE; DIVERSITY; BAY	The Helgoland Roads time series is one of the longest and most detailed time series in the world. It comprises daily phytoplankton counts accompanied by physico-chemical measurements. As such, it provides valuable long-term record of changes and their underlying causes in the phytoplankton community around Helgoland. This work provides an updated check-list of the phytoplankton species encountered at the Helgoland Roads LTER station with additional taxonomic assessments from live net samples and scanning electron microscope surveys. Since the last check-list was published 11 additional taxa have been recorded for the first time comprising 9 diatom and 2 dino-flagellate species. Of the 9 diatom species 3 were Chaetoceros species: Chaetoceros anastomosans, C. pseudocurvisetus and C. lorenzianus (the latter identified by their resting cysts) which were all first recognised in September 2009. The toxic dinoflagellate Dinophysis tripos, and the bipolar centric diatom Odontella longicruris both were first observed in September 2015. The latest new record is the potentially toxic dinoflagellate Alexandrium ostenfeldii, first recorded in August 2017. All of the first records (with the exception of Dinophysis tripos) were first observed in semi-quantitative surveys based on live samples and SEM demonstrating that adding less frequent but very detailed assessments can complement high frequency counts of fixed samples as long as these data of different origin are linked efficiently to the individual sampling event and all metadata including representative pictorial metadata are recorded in a consistent manner. In this manner the enhanced checklist serves as a baseline against which long-term changes in phytoplankton potentially related to ecosystem state can be addressed.	[Kraberg, Alexandra; Kieb, Ute; Peters, Silvia; Wiltshire, Karen Helen] Helmholtz Ctr Polar & Marine Res, Biol Anstalt Helgoland, Alfred Wegener Inst, Kurpromenade 201, D-27498 Helgoland, Germany; [Wiltshire, Karen Helen] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Wattenmeerstn Sylt, Hafenstr 43, D-25992 List Auf Sylt, Germany	Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Kraberg, A (通讯作者)，Helmholtz Ctr Polar & Marine Res, Biol Anstalt Helgoland, Alfred Wegener Inst, Kurpromenade 201, D-27498 Helgoland, Germany.	Alexandra.Kraberg@awi.de	Wiltshire, Karen/N-9494-2017	Kraberg, Alexandra/0000-0003-2571-2074	Alfred-Wegener Institute Helmholtz Centre for Polar and Marine Research	Alfred-Wegener Institute Helmholtz Centre for Polar and Marine Research	This work was funded by the Alfred-Wegener Institute Helmholtz Centre for Polar and Marine Research	Bresnan E, 2015, HELGOLAND MAR RES, V69, P193, DOI 10.1007/s10152-015-0428-5; Brown L, 2010, EUR J PHYCOL, V45, P375, DOI 10.1080/09670262.2010.495164; Callies U, 2017, GEO-MAR LETT, V37, P151, DOI 10.1007/s00367-016-0466-2; Cembella AD, 2000, PHYCOLOGIA, V39, P67, DOI 10.2216/i0031-8884-39-1-67.1; Costello MJ, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0051629; Diercks S, 2008, J PLANKTON RES, V30, P439, DOI 10.1093/plankt/fbn009; DREBES G, 1976, BOT MAR, V19, P75, DOI 10.1515/botm.1976.19.2.75; Ellegaard M, 2008, PHYCOLOGIA, V47, P156, DOI 10.2216/07-79.1; Gribble KE, 2005, DEEP-SEA RES PT II, V52, P2745, DOI 10.1016/j.dsr2.2005.06.018; HASLE GR, 1970, T AM MICROSC SOC, V89, P469, DOI 10.2307/3224555; HASLE GR, 1995, J PHYCOL, V31, P428, DOI 10.1111/j.0022-3646.1995.00428.x; Hasle Grethe R., 2002, Harmful Algae, V1, P137, DOI 10.1016/S1568-9883(02)00014-8; HENDEY I, 1964, INTRO ACCOUNT SMAL 5, P317; Hoban MA, 2008, NOVA HEDWIGIA, P47; Hoppenrath M, 2004, HELGOLAND MAR RES, V58, P243, DOI 10.1007/s10152-004-0190-6; Hoppenrath M., 2009, KL SENCKENBERG-REIHE, V49, P264; Hoppenrath M, 2007, EUR J PHYCOL, V42, P271, DOI 10.1080/09670260701352288; Kaczmarska I, 2005, HARMFUL ALGAE, V4, P1, DOI 10.1016/j.hal.2003.07.001; Kaczmarska I, 2007, HARMFUL ALGAE, V6, P861, DOI 10.1016/j.hal.2007.05.001; Kooistra WHCF, 2008, PROTIST, V159, P177, DOI 10.1016/j.protis.2007.09.004; Kownacka J, 2013, ESTUAR COAST SHELF S, V119, P101, DOI 10.1016/j.ecss.2013.01.010; Kraberg Alexandra C., 2018, Marine Biodiversity Records, V11, P21, DOI 10.1186/s41200-018-0155-0; Kraberg AC, 2015, J SEA RES, V101, P51, DOI 10.1016/j.seares.2015.03.004; Kraberg AC, 2012, HELGOLAND MAR RES, V66, P463, DOI 10.1007/s10152-011-0277-9; Kremp A, 2012, ECOL EVOL, V2, P1195, DOI 10.1002/ece3.245; Kühn SF, 2006, NOVA HEDWIGIA, P307; Larsen J., 1992, ICES IDENTIFICATION, P12; Lavigne AS, 2015, DIATOM RES, V30, P307, DOI 10.1080/0269249X.2015.1110536; Li Y, 2017, PLOS ONE, V12, DOI 10.1371/journal.pone.0168887; Loebl M, 2013, J SEA RES, V82, P80, DOI 10.1016/j.seares.2012.09.010; LUND J. 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Res.	OCT 8	2019	73	1							9	10.1186/s10152-019-0528-8	http://dx.doi.org/10.1186/s10152-019-0528-8			22	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	JP9NB		hybrid			2025-03-11	WOS:000498582700001
J	Jerney, J; Ahonen, SA; Hakanen, P; Suikkanen, S; Kremp, A				Jerney, Jacqueline; Ahonen, Salta Annika; Hakanen, Paivi; Suikkanen, Sanna; Kremp, Anke			Generalist Life Cycle Aids Persistence of <i>Alexandrium ostenfeldii</i> (Dinophyceae) in Seasonal Coastal Habitats of the Baltic Sea<SUP>1</SUP>	JOURNAL OF PHYCOLOGY			English	Article						Cyst; dinoflagellate; dormancy; encystment; germination; microalgae; quiescence; resting cyst; sexual reproduction	DINOFLAGELLATE SCRIPPSIELLA-HANGOEI; RESTING CYSTS; EXPERIMENTAL EVOLUTION; SEED BANKS; BLOOM; GERMINATION; DORMANCY; MORPHOLOGY; PATTERNS; TEMPERATURE	In seasonal environments, strong gradients of environmental parameters can shape life cycles of phytoplankton. Depending on the rate of environmental fluctuation, specialist or generalist strategies may be favored, potentially affecting life cycle transitions. The present study examined life cycle transitions of the toxin producing Baltic dinoflagellate Alexandrium ostenfeldii and their regulation by environmental factors (temperature and nutrients). This investigation aimed to determine whether genetic recombination of different strains is required for resting cyst formation and whether newly formed cysts are dormant. Field data (temperature and salinity) and sediment surface samples were collected from a site with recurrent blooms and germination and encystment experiments were conducted under controlled laboratory conditions. Results indicate a lack of seasonal germination pattern, set by an endogenous rhythm, as commonly found with other dinoflagellates from the Baltic Sea. Germination of quiescent cysts was triggered by temperatures exceeding 10 degrees C and combined nutrient limitation of nitrogen and phosphorus or a drop in temperature from 16 to 10 degrees C triggered encystment most efficiently. Genetic recombination was not mandatory for the formation of resting cysts, but supported higher numbers of resistant cysts and enhanced germination capacity after a resting period. Findings from this study confirm that A. ostenfeldii follows a generalist germination and cyst formation strategy, driven by strong seasonality, which may support its persistence and possibly expansion in marginal environments in the future, if higher temperatures facilitate a longer growth season.	[Jerney, Jacqueline; Ahonen, Salta Annika; Hakanen, Paivi; Suikkanen, Sanna; Kremp, Anke] Finnish Environm Inst, Marine Res Ctr, Helsinki 00790, Finland; [Jerney, Jacqueline] Univ Helsinki, Tvarminne Zool Stn, Hango 10900, Finland; [Kremp, Anke] Leibniz Inst Ostseeforsch Warnemunde, D-18119 Rostock, Germany	Finnish Environment Institute; University of Helsinki; Leibniz Institut fur Ostseeforschung Warnemunde	Jerney, J (通讯作者)，Finnish Environm Inst, Marine Res Ctr, Helsinki 00790, Finland.; Jerney, J (通讯作者)，Univ Helsinki, Tvarminne Zool Stn, Hango 10900, Finland.	jacqueline.jerney@gmx.at		Kremp, Anke/0000-0001-9484-6899; Suikkanen, Sanna/0000-0002-0768-8149; Ahonen, Salla/0000-0002-0213-8332; Jerney, Jacqueline/0000-0002-2736-5179	Academy of Finland [310449]; Walter and Andree de Nottbeck Foundation; Maj and Tor Nessling Foundation; Academy of Finland (AKA) [310449] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Walter and Andree de Nottbeck Foundation; Maj and Tor Nessling Foundation; Academy of Finland (AKA)(Research Council of Finland)	We thank Kaisu Jussila for her vigorous support of the experimental work and microscopy and Johan Franzen for assistance with sampling and field work. This work was funded in part by grants from the Academy of Finland (grant 310449 to J. J., S. S. and A. K.), Walter and Andree de Nottbeck Foundation (J. J.), and Maj and Tor Nessling Foundation (P. H.).	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Phycol.	DEC	2019	55	6					1226	1238		10.1111/jpy.12919	http://dx.doi.org/10.1111/jpy.12919		OCT 2019	13	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	JR4PJ	31520419	Green Published, hybrid			2025-03-11	WOS:000489549700001
J	Lum, WM; Takahashi, K; Benico, G; Takayama, H; Iwataki, M				Lum, Wai Mun; Takahashi, Kazuya; Benico, Garry; Takayama, Haruyoshi; Iwataki, Mitsunori			<i>Dactylodinium arachnoides sp. nov</i>. (Borghiellaceae, Dinophyceae): a new marine dinoflagellate with a loop-shaped apical structure complex and tubular membranous extrusomes	PHYCOLOGIA			English	Article						Amphiesmal vesicles; Cyst; Eyespot; Peduncle; Trichocyst	GEN. NOV.; UNARMORED DINOFLAGELLATE; FEEDING MECHANISM; COASTAL WATERS; FINE-STRUCTURE; LAKE TOVEL; COMB. NOV; PHYLOGENY; ULTRASTRUCTURE; GYMNODINIALES	The morphology and phylogeny of an enigmatic marine dinoflagellate were examined using LM, SEM, TEM, and molecular phylogeny inferred from rDNA. Cells were elliptical with a conical epicone and a hemispherical hypocone. They measured c. 24.7 ?m long, with a cingulum descending approximately twice its own width. Amphiesmal vesicles were thick and transparent, and were supported by translucent ridges at the suture, which were distinctive and visible by light microscopy. A large peduncle extending to the anterior was accommodated in the anterior sulcal extension. A nucleus was usually located in the hypocone, and chloroplasts were distributed peripherally. The apical structure complex was loop-shaped, originating from the right side of the anterior sulcal extension and extending upward to encircle the dorsal side of the cell apex in an anticlockwise direction. TEM showed trichocysts with lateral hairs, a pyrenoid penetrated by cytoplasmic insertions containing tubules, and an eyespot comprising globules within the chloroplast. Cells also had tubular extrusomes, unique in dinoflagellates, composed of a membrane stacked in a vesicle, and formed a long membranous tube with 2?4 finger-like terminal branches after being released from the vesicle. Molecular phylogenies showed the affinity of the species to Dactylodinium pterobelotum in the family Borghiellaceae. We propose Dactylodinium arachnoides sp. nov. for the dinoflagellate described here. It shares the characteristic traits of amphiesmal vesicles, a peduncle, a pyrenoid, and trichocysts with D. pterobelotum, whereas the number of amphiesmal vesicles, the loop-shaped apical structure complex, eyespot type A, and tubular membranous extrusomes are distinct.	[Lum, Wai Mun; Benico, Garry] Univ Tokyo, Grad Sch Agr & Life Sci, Bunkyo Ku, 1-1-1 Yayoi, Tokyo 1138657, Japan; [Takahashi, Kazuya; Iwataki, Mitsunori] Univ Tokyo, Asian Nat Environm Sci Ctr, Bunkyo Ku, 1-1-1 Yayoi, Tokyo 1138657, Japan	University of Tokyo; University of Tokyo	Iwataki, M (通讯作者)，Univ Tokyo, Asian Nat Environm Sci Ctr, Bunkyo Ku, 1-1-1 Yayoi, Tokyo 1138657, Japan.	iwataki@anesc.u-tokyo.ac.jp	Lum, Wai Mun/GLQ-5560-2022; Benico, Garry/S-6313-2019; Takahashi, Kazuya/LCD-6164-2024; Iwataki, Mitsunori/H-9640-2019	Benico, Garry/0000-0002-2617-0222; Takahashi, Kazuya/0000-0003-1349-1120; Lum, Wai Mun/0000-0002-8998-9040; Iwataki, Mitsunori/0000-0002-5844-2800	Japan Society for the Promotion of Science (JSPS) KAKENHI [25304029, 15H04533]; Grants-in-Aid for Scientific Research [25304029, 15H04533] Funding Source: KAKEN	Japan Society for the Promotion of Science (JSPS) KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	This work was partially supported by Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science (JSPS) KAKENHI [Grant Numbers 25304029 and 15H04533 (MI)].	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J	Deng, YY; Hu, ZX; Chai, ZY; Tang, YZ				Deng, Yunyan; Hu, Zhangxi; Chai, Zhaoyang; Tang, Ying Zhong			Cloning and comparative studies of proliferating cell nuclear antigen (PCNA) genes for nine dinoflagellates	JOURNAL OF APPLIED PHYCOLOGY			English	Article						Dinoflagellate; Harmful algal blooms (HABs); Proliferating cell nuclear antigen (PCNA); Resting cyst; Scrippsiella trochoidea	HARMFUL ALGAL BLOOMS; PROROCENTRUM-DONGHAIENSE; MOLECULAR-CLONING; DNA-REPLICATION; PROTEIN CYCLIN; EXPRESSION; SEQUENCE; MODEL; DINOPHYCEAE; PERFORMANCE	Proliferating cell nuclear antigen (PCNA), a co-factor of DNA polymerases delta and epsilon, is associated with active cell proliferation, particularly with the S phase of the eukaryotic cell cycle, and the expression of this gene has been therefore proposed as a molecular marker for estimating phytoplankton growth rate and even population dynamics. In this study, the full-length cDNA sequences of PCNA for nine dinoflagellate species (ten strains) were obtained, analyzed, and further characterized with the expression in response to alterations of growth stage and life cycle. All the ten genes have a 777 or 780 bp ORF and encode a protein of 258 or 259 amino acids, similar to PCNAs from vertebrates and plants. The deduced amino acid sequences include conservative motif characteristic to the PCNA gene family, implying conserved functions of PCNA among organisms of different taxa. Alignment analysis in combination with other sequences available in NCBI database exhibited high amino acid similarities (79.2-96.9%) among PCNAs from 17 dinoflagellate species. Phylogenetic tree derived from 37 PCNA sequences of dinoflagellates was consistent with the taxonomic affiliation of these taxa. Then, we used the cosmopolitan, toxic, and resting cyst-producing dinoflagellate Scrippsiella trochoidea as a representative of HAB-forming dinoflagellates to investigate PCNA (StPCNA) expression at different stages of growth and life cycle and the results of real-time quantitative PCR revealed clearly a stage-dependent pattern in the transcription of StPCNA. The transcripts dramatically reduced from an exponential to a stationary growth stage and then further significantly decreased from a stationary stage to dormant stage (resting cysts), a pattern in accordance with that previously reported from the dinoflagellates Alexandrium catenella and Prorocentrum donghaiense. In terms of its minimal implication, this work enhances the previous perception about the function and possible application of PCNA gene, and more importantly, our results indicated that PCNA is not silent during the dormant stage of dinoflagellates.	[Deng, Yunyan; Hu, Zhangxi; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Chai, Zhaoyang; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China.	yingzhong.tang@qdio.ac.cn	Chai, Zhaoyang/F-7485-2017; ZHANG, hui jie/HTN-1690-2023	Deng, Yunyan/0000-0001-5967-3611	National Science Foundation of China [41476142, 41506143, 61533011, U1301235]; NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]	National Science Foundation of China(National Natural Science Foundation of China (NSFC)); NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences	We acknowledge financial support from the National Science Foundation of China (grant number 41606126), the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences (grant number U1606404), and the National Science Foundation of China (grant numbers 41476142, 41506143, 61533011, and U1301235).	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OCT	2019	31	5					2969	2979		10.1007/s10811-019-01809-6	http://dx.doi.org/10.1007/s10811-019-01809-6			11	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Marine & Freshwater Biology	JJ1BQ					2025-03-11	WOS:000493895800019
J	Di Poi, E; Kraus, R; Cabrini, M; Finotto, S; Flander-Putrle, V; Grego, M; Kuzat, N; Gladan, ZN; Pezzolesi, L; Riccardi, E; Aubry, FB; Bastianini, M				Di Poi, Elena; Kraus, Romina; Cabrini, Marina; Finotto, Stefania; Flander-Putrle, Vesna; Grego, Mateja; Kuzat, Natasa; Gladan, Zivana Nincevic; Pezzolesi, Laura; Riccardi, Elena; Aubry, Fabrizio Bernardi; Bastianini, Mauro			Dinoflagellate resting cysts from surface sediments of the Adriatic Ports: Distribution and potential spreading patterns	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate cysts; Non-indigenous species; Port baseline survey; Ballast waters; Circulation; Adriatic Sea	HARMFUL ALGAL BLOOMS; SCRIPPSIELLA-TROCHOIDEA DINOPHYCEAE; BALLAST WATER INTRODUCTIONS; RECENT MARINE-SEDIMENTS; SP-NOV DINOPHYCEAE; PROTOCERATIUM-RETICULATUM; MEDITERRANEAN SEA; PHYTOPLANKTON ASSEMBLAGES; LINGULODINIUM-POLYEDRUM; SPECIES INTRODUCTIONS	The ability of microalgae to preserve viable in coastal sediments as resting forms provides a reservoir of bio-diversity and a useful tool to determine species spreadings. This study represents the first port baseline survey on dinoflagellate cysts, investigated in nine Adriatic ports during a cross border project. 40 dinoflagellate taxa were detected. The assemblages resulted in all ports dominated by Lingulodinium polyedra and Alexandrium minutum/affine/tamutum group. General separation to the western and eastern side of the Adriatic regarding cysts assemblage composition, partially abundance, was observed. Six taxa were detected as non-indigenous species for the Adriatic. Two taxa are included in the list of harmful aquatic organisms, indicating the potential threat of ballast waters in the Adriatic. Potential spreading of taxa by general circulation and ballast waters, intra- and extra-Adriatic was investigated. The entering in to force of the ballast waters management regulations should enhance prospects to minimize future harmful impacts.	[Di Poi, Elena; Cabrini, Marina] Ist Nazl Oceanog & Geofis Sperimentale OGS, Sect Oceanog, Via A Pittard 54, I-34151 Trieste, Italy; [Kraus, Romina; Kuzat, Natasa] Rudjer Boskovic Inst, Ctr Marine Res, Giordano Paliaga 5, Rovinj 52210, Croatia; [Finotto, Stefania; Aubry, Fabrizio Bernardi; Bastianini, Mauro] Natl Res Council Italy, ISMAR CNR Inst Marine Sci, Castello 2737-F, I-30122 Venice, Italy; [Flander-Putrle, Vesna; Grego, Mateja] Natl Inst Biol, Marine Biol Stn, Fornace 41, Piran 6330, Slovenia; [Gladan, Zivana Nincevic] Inst Oceanog & Fisheries, Setaliste I Mestrovica 63, Split 21000, Croatia; [Pezzolesi, Laura] Univ Bologna, Dept Biol Geol & Environm Sci BiGeA, Via St Alberto 163, I-48123 Ravenna, Italy; [Riccardi, Elena] Fdn Ctr Ric Marine, Natl Reference Lab Marine Biotoxins, Vle A Vespucci 2, I-47042 Cesenatico, FC, Italy	Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Rudjer Boskovic Institute; Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Marine (ISMAR-CNR); National Institute of Biology - Slovenia; Croatian Institute of Oceanography & Fisheries (IZOR); University of Bologna	Kraus, R (通讯作者)，Rudjer Boskovic Inst, Ctr Marine Res, Giordano Paliaga 5, Rovinj 52210, Croatia.	edipoi@inogs.it; kraus@cim.irb.hr; mcabrini@inogs.it; stefania.finotto@ve.ismar.cnr.it; flander@nib.si; mateja.grego@nib.si; nkuzat@irb.hr; nincevic@izor.hr; laura.pezzolesi@unibo.it; riccardi.elena11@gmail.com; fabrizio.bernardi@ismar.cnr.it; mauro.bastianini@ismar.cnr.it	Kraus, Romina/AAS-7754-2021; Pezzolesi, Laura/ABD-7677-2020	Flander-Putrle, Vesna/0000-0001-8718-9819; Bernardi Aubry, Fabrizio/0000-0003-0417-8597; Bastianini, Mauro/0000-0001-6758-4192	IPA Adriatic Cross-Border Cooperation Programme -strategic project Ballast Water Management System for Adriatic Sea Protection (BALMAS); National Foundation for Science, Higher Education and Technological Development of the Republic of Croatia, project Ecological response of northern Adriatic to climatic changes and anthropogenic impact (EcoRENA)	IPA Adriatic Cross-Border Cooperation Programme -strategic project Ballast Water Management System for Adriatic Sea Protection (BALMAS); National Foundation for Science, Higher Education and Technological Development of the Republic of Croatia, project Ecological response of northern Adriatic to climatic changes and anthropogenic impact (EcoRENA)	This publication has been produced with the financial assistance of the IPA Adriatic Cross-Border Cooperation Programme -strategic project Ballast Water Management System for Adriatic Sea Protection (BALMAS). The contents of this publication are the sole responsibility of authors and can under no circumstances be regarded as reflecting the position of the IPA Adriatic Cross-Border Cooperation Programme Authorities. This work was additionally funded by The National Foundation for Science, Higher Education and Technological Development of the Republic of Croatia, project Ecological response of northern Adriatic to climatic changes and anthropogenic impact (EcoRENA). The authors are grateful to crew of research vessel Vila Velebita, M/B Litus, dr. Andrej Jaklin and Darko Ferencevic and Italian Coast Guard diver team for sediment sampling by diving routine, and dr. Alfred Beran, Denis Skalic, Ivan Balkovic and Jernej Uhan for assistance in sediment processing.	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Pollut. Bull.	OCT	2019	147				SI		185	208		10.1016/j.marpolbul.2019.01.014	http://dx.doi.org/10.1016/j.marpolbul.2019.01.014			24	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	JF8NM	30926267	Green Published			2025-03-11	WOS:000491641200014
J	Landa, M; Burns, AS; Durham, BP; Esson, K; Nowinski, B; Sharma, S; Vorobev, A; Nielsen, T; Kiene, RP; Moran, MA				Landa, Marine; Burns, Andrew S.; Durham, Bryndan P.; Esson, Kaitlin; Nowinski, Brent; Sharma, Shalabh; Vorobev, Alexey; Nielsen, Torben; Kiene, Ronald P.; Moran, Mary Ann			Sulfur metabolites that facilitate oceanic phytoplankton-bacteria carbon flux	ISME JOURNAL			English	Article							DISSOLVED ORGANIC-MATTER; MARINE-BACTERIA; DIMETHYL SULFIDE; DMSP; DIMETHYLSULFONIOPROPIONATE; TAURINE; GENES; ACID; DIMETHYLSULPHONIOPROPIONATE; WIDESPREAD	Unlike biologically available nitrogen and phosphorus, which are often at limiting concentrations in surface seawater, sulfur in the form of sulfate is plentiful and not considered to constrain marine microbial activity. Nonetheless, in a model system in which a marine bacterium obtains all of its carbon from co-cultured phytoplankton, bacterial gene expression suggests that at least seven dissolved organic sulfur (DOS) metabolites support bacterial heterotrophy. These labile exometabolites of marine dinoflagellates and diatoms include taurine, N-acetyltaurine, isethionate, choline-O-sulfate, cysteate, 2,3-dihydroxypropane-1-sulfonate (DHPS), and dimethylsulfoniopropionate (DMSP). Leveraging from the compounds identified in this model system, we assessed the role of sulfur metabolites in the ocean carbon cycle by mining the Tara Oceans dataset for diagnostic genes. In the 1.4 million bacterial genome equivalents surveyed, estimates of the frequency of genomes harboring the capability for DOS metabolite utilization ranged broadly, from only 1 out of every 190 genomes (for the C2 sulfonate isethionate) to 1 out of every 5 (for the sulfonium compound DMSP). Bacteria able to participate in DOS transformations are dominated by Alphaproteobacteria in the surface ocean, but by SAR324, Acidimicrobiia, and Gammaproteobacteria at mesopelagic depths, where the capability for utilization occurs in higher frequency than in surface bacteria for more than half the sulfur metabolites. The discovery of an abundant and diverse suite of marine bacteria with the genetic capacity for DOS transformation argues for an important role for sulfur metabolites in the pelagic ocean carbon cycle.	[Landa, Marine; Burns, Andrew S.; Nowinski, Brent; Sharma, Shalabh; Vorobev, Alexey; Moran, Mary Ann] Univ Georgia, Dept Marine Sci, Athens, GA 30602 USA; [Durham, Bryndan P.] Univ Washington, Sch Oceanog, Seattle, WA 98105 USA; [Esson, Kaitlin; Kiene, Ronald P.] Univ S Alabama, Dept Marine Sci, Mobile, AL 36688 USA; [Esson, Kaitlin; Kiene, Ronald P.] Dauphin Isl Sea Lab, Dauphin Isl, AL 36528 USA; [Nielsen, Torben] DOE Joint Genome Inst, 2800 Mitchell Dr, Walnut Creek, CA 94598 USA; [Landa, Marine] Univ Calif Santa Cruz, Ocean Sci Dept, Santa Cruz, CA 95064 USA; [Burns, Andrew S.] Georgia Inst Technol, Sch Biol Sci, Atlanta, GA 30332 USA; [Vorobev, Alexey] Genoscope, CEA Inst Biol Francois Jacob, 2 Rue Gaston Cremieux, F-91057 Evry, France	University System of Georgia; University of Georgia; University of Washington; University of Washington Seattle; University of South Alabama; Dauphin Island Sea Lab; United States Department of Energy (DOE); University of California System; University of California Santa Cruz; University System of Georgia; Georgia Institute of Technology; CEA; Universite Paris Saclay	Moran, MA (通讯作者)，Univ Georgia, Dept Marine Sci, Athens, GA 30602 USA.	mmoran@uga.edu	Landa, Marine/GXH-3031-2022; Moran, Mary/B-6939-2012	Moran, Mary Ann/0000-0002-0702-8167; Vorobev, Alexey/0000-0002-2157-8747; Durham, Bryndan/0000-0002-2253-157X; Nowinski, Brent/0000-0002-6847-8145; Landa, Marine/0000-0001-7129-1683	NSF [OCE-1342694, OCE-1342699, IOS-1656311]; Gordon and Betty Moore Foundation [5503]; US Department of Energy Office of Science User Facilities [DE-AC02-05CH11231]	NSF(National Science Foundation (NSF)); Gordon and Betty Moore Foundation(Gordon and Betty Moore Foundation); US Department of Energy Office of Science User Facilities(United States Department of Energy (DOE))	We appreciate assistance from C Smith and S Roth, and thank N Ivanova for help with IMG database access. Computing resources and technical expertise were provided by the Georgia Genomics and Bioinformatics Core. This work was funded by NSF grants OCE-1342694, OCE-1342699, IOS-1656311 and The Gordon and Betty Moore Foundation grant #5503. This research used resources of the Joint Genome Institute (JGI) and the National Energy Research Scientific Computing Center (NERSC), US Department of Energy Office of Science User Facilities operated under Contract No. DE-AC02-05CH11231.	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OCT	2019	13	10					2536	2550		10.1038/s41396-019-0455-3	http://dx.doi.org/10.1038/s41396-019-0455-3			15	Ecology; Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Microbiology	IY4UN	31227817	Bronze, Green Published			2025-03-11	WOS:000486388600012
J	Perini, F; Bastianini, M; Capellacci, S; Pugliese, L; DiPoi, E; Cabrini, M; Buratti, S; Marini, M; Penna, A				Perini, F.; Bastianini, M.; Capellacci, S.; Pugliese, L.; DiPoi, E.; Cabrini, M.; Buratti, S.; Marini, M.; Penna, A.			Molecular methods for cost-efficient monitoring of HAB (harmful algal bloom) dinoflagellate resting cysts	MARINE POLLUTION BULLETIN			English	Article						Adriatic Sea; Cysts; HAB species; Microscopy; Quantitative PCR; Sediments	REAL-TIME PCR; ALEXANDRIUM-CATENELLA DINOPHYCEAE; GENUS ALEXANDRIUM; SURFACE SEDIMENTS; LIFE-CYCLE; GYMNODINIUM-CATENATUM; EXTRACELLULAR DNA; SEAFOOD SAFETY; QPCR ASSAY; MINUTUM	Cyst abundance and identity are essential for understanding and predicting blooms, and for assessing the dispersal of toxic target dinoflagellate species by natural or human mediated ways, as with ballast waters. The aim of this study was to apply rapid, specific and sensitive qPCR assays to enumerate toxic dinoflagellate cysts in sediment samples collected from Adriatic harbours. The molecular standard curves of various target species allowed obtaining the rDNA copy number per cyst. The analytical sensitivity for specific standard curves was determined to be 2 or 10 rDNA copies per reaction. The abundance varied in the range of 1-747 dinoflagellate cysts g(-1) dry weight. The assays showed greater sensitivity as compared to counts by light microscopy. This qPCR method revealed a powerful tool for the quantification of cysts from toxic dinoflagellate resting stages in sediment samples from Adriatic ports.	[Perini, F.; Capellacci, S.; Pugliese, L.; Penna, A.] Univ Urbino, Dept Biomol Sci, Viale Trieste 296, I-61121 Pesaro, Italy; [Bastianini, M.] CNR, Ist Sci Marine, ISMAR CNR, Venice, Italy; [DiPoi, E.; Cabrini, M.] Ist Nazl Oceanog & Geofis Sperimentale, OGS, Sgonico, Italy; [Buratti, S.] Fdn Ctr Ric Marine, Cesenatico, Italy; [Marini, M.; Penna, A.] CNR, Ist Sci Marine, ISMAR CNR, Ancona, Italy	University of Urbino; Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Marine (ISMAR-CNR); Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Marine (ISMAR-CNR)	Penna, A (通讯作者)，Univ Urbino, Dept Biomol Sci, Viale Trieste 296, I-61121 Pesaro, Italy.	antonella.penna@uniurb.it	Pugliese, Lorenzo/AAC-3103-2022; Marini, Mauro/AAE-9399-2020	Marini, Mauro/0000-0002-9674-7197; Bastianini, Mauro/0000-0001-6758-4192; Penna, Antonella/0000-0002-1880-9401	EU IPA Balmas Project [1degrees STR/0005]	EU IPA Balmas Project	Financial support was provided by the EU IPA Balmas Project (Project code 1 degrees STR/0005). The authors are very grateful to Dr. Maria Grazia Giacobbe and Dr. Franca Guerrini for providing some microalgal strains, and to Dr. Raffaele D'Adamo for providing Bari sediment samples.	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Pollut. Bull.	OCT	2019	147				SI		209	218		10.1016/j.marpolbul.2018.06.013	http://dx.doi.org/10.1016/j.marpolbul.2018.06.013			10	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	JF8NM	29910142				2025-03-11	WOS:000491641200015
J	Drits, AV; Pasternak, AF; Kravchishina, MD; Arashkevich, EG; Sukhanova, IN; Flint, MV				Drits, A. V.; Pasternak, A. F.; Kravchishina, M. D.; Arashkevich, E. G.; Sukhanova, I. N.; Flint, M. V.			The Role of Plankton in the Vertical Flux in the East Siberian Sea Shelf	OCEANOLOGY			English	Article						East Siberian Sea; Indigirka River plume; vertical flux of particulate matter; carcasses of zooplankton; fecal pellets	PARTICULATE MATTER; BIOGENIC MATTER; SEASONAL-VARIATION; ORGANIC-MATTER; FECAL PELLETS; EXPORT FLUXES; BEAUFORT SEA; LAPTEV-SEA; KARA SEA; CARBON	The role of plankton in the vertical flux in the East Siberian Sea was studied in the 69 cruise of the RV "Akademik Mstislav Keldysh" in September 2017. Vertical fluxes were measured in sediment traps on two buoy stations in the area of the Indigirka River plume and in the marine shelf area. Mass vertical flux and particulate organic carbon flux varied from 80 to 530 mg/m(2)/d and from 16 to 49 mgC/m(2)/d, accordingly. Phytoplankton in sediment traps was dominated by cysts and spores of diatoms and dinoflagellates. Phytoplankton flux increased with depths from 0.22-0.33 to 1.2-1.3 mgC/m(2)/d. Fecal pellet fluxes (7-12 mgC/m(2)/d) were similar at two studied stations and did not change with depth. Zooplankton in the traps was dominated by larvacean houses and carcasses of copepods Jashnovia tolli and Calanus glacialis. Flux of zooplankton varied from 3 to 17 mgC/m(2)/d. The influence of the continental runoff reflected in a decrease of the proportion of planktonogenic components in the vertical flux of organic carbon. In the river plume area, their total contribution to organic carbon flux did not exceed 30%; on the marine shelf it reached 80% of organic carbon flux.	[Drits, A. V.; Pasternak, A. F.; Kravchishina, M. D.; Arashkevich, E. G.; Sukhanova, I. N.; Flint, M. V.] Russian Acad Sci, Shirshov Inst Oceanol, Moscow 117997, Russia	Russian Academy of Sciences; Shirshov Institute of Oceanology	Drits, AV (通讯作者)，Russian Acad Sci, Shirshov Inst Oceanol, Moscow 117997, Russia.	adrits@mail.ru	Pasternak, Anna/E-6121-2014; Flint, Mikhail/ABA-4039-2021; Drits, Alexander/G-1171-2014; Arashkevich, Elena/E-8175-2014; Kravchishina, Marina/B-3741-2017	Arashkevich, Elena/0000-0003-0374-3064; Kravchishina, Marina/0000-0001-9967-2891; Flint, Mikhail/0000-0003-4185-9412	RSF [14-50-00095]; RFBR [17-0500799, 19-04-00322, 18-05-60069, 19-0500022]	RSF(Russian Science Foundation (RSF)); RFBR(Russian Foundation for Basic Research (RFBR))	The study was performed within the framework of the State task, subject number 0149-2018-0035. Field studies were supported by RSF grant no. 14-50-00095, the processing and analysis of materials of sedimentation traps was supported by the RFBR Projects no. 18-05-60069, and 19-0500022, the processing and analysis of water and plankton samples were supported by the RFBR Projects no. 17-0500799, 19-04-00322.	[Anonymous], 2018, MAR EC RUSS ARCT EXP; Charkin AN, 2015, DOKL EARTH SCI, V462, P626, DOI 10.1134/S1028334X15060100; Chislenko LL, 1968, Nomograms for determination of masses of aquatic organisms based on sizes and body shape; Conway D. V. P., 1991, BIOL CAETOGNATHS; DEIBEL D, 1985, MAR ECOL PROG SER, V27, P67, DOI 10.3354/meps027067; DEIBEL D, 1986, MAR BIOL, V93, P429, DOI 10.1007/BF00401110; Demidov A. 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J	Tobin, ED; Wallace, CL; Crumpton, C; Johnson, G; Eckert, GL				Tobin, Elizabeth D.; Wallace, Chelsea L.; Crumpton, Cody; Johnson, Genevieve; Eckert, Ginny L.			Environmental drivers of paralytic shellfish toxin producing <i>Alexandrium catenella</i> blooms in a fjord system of northern Southeast Alaska	HARMFUL ALGAE			English	Article						Paralytic shellfish poisoning; Saxitoxins; Freshwater discharge; Temperature; Weather	HARMFUL ALGAL BLOOMS; VERTICAL MIGRATION; FUNDYENSE BLOOM; RESTING CYSTS; CHUKCHI SEA; MARINE; DINOPHYCEAE; GULF; BAY; PHYTOPLANKTON	Paralytic shellfish poisoning (PSP) is a persistent problem that threatens human health and the availability of shellfish resources in Alaska. Regular outbreaks of marine dinoflagellates in the genus Alexandrium produce paralytic shellfish toxins (PSTs) that make shellfish consumption unsafe, and impose economic hardships on Alaska's shellfish industry. Phytoplankton and environmental monitoring spanning 2008-2016, and a pilot benthic cyst survey in 2016, were focused in the Juneau region of Southeast Alaska to investigate Alexandrium catenella distributions and conditions favorable to bloom development. Overwintering Alexandrium cysts were found in near-shore sediments throughout the study region. Alexandrium catenella cells were present in the water column across a range of sea surface temperatures (7-15 degrees C) and surface salinities (S = 4-30); however, an optimal temperature/salinity window (10-13 degrees C, 18-23) supported highest cell concentrations. Measurable levels of PSTs were associated with lower concentrations (100 cells L-1) of A. catenella, indicating high cell densities may not be required for shellfish toxicity to occur. Several interacting local factors were identified to support A. catenella blooms: 1) sea surface temperatures >= 7 degrees C; 2) increasing air temperature; 3) low to moderate freshwater discharge; and 4) several consecutive days of dry and calm weather. In combination, these bloom favorable conditions coincide with toxic bloom events during May and June in northern Southeast Alaska. These findings highlight how integrated environmental and phytoplankton monitoring can be used to enhance early warning capacity of toxic bloom events, providing more informed guidance to shellfish harvesters and resource managers in Alaska.	[Tobin, Elizabeth D.; Wallace, Chelsea L.; Johnson, Genevieve; Eckert, Ginny L.] Univ Alaska Fairbanks, Coll Fisheries Ocean Sci, 17101 Point Lena Loop Rd, Juneau, AK USA; [Crumpton, Cody] Univ Alaska Southeast, Nat Sci Dept, 11275 Glacier Highway, Juneau, AK 99801 USA; [Tobin, Elizabeth D.; Wallace, Chelsea L.; Johnson, Genevieve; Eckert, Ginny L.] 1033 Old Blyn Hwy, Sequim, WA 98382 USA	University of Alaska System; University of Alaska Fairbanks; University of Alaska System; University of Alaska Southeastern	Tobin, ED (通讯作者)，1033 Old Blyn Hwy, Sequim, WA 98382 USA.	edtobin@alaska.edu			NSF Science, Engineering, Education for Sustainability (SEES) Fellowship [1415195]; National Institute of General Medical Sciences of the National Institutes of Health [UL1GM118991, TL4GM118992, RL5GM118990]; ICER; Directorate For Geosciences [1415195] Funding Source: National Science Foundation	NSF Science, Engineering, Education for Sustainability (SEES) Fellowship; National Institute of General Medical Sciences of the National Institutes of Health(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of General Medical Sciences (NIGMS)); ICER; Directorate For Geosciences(National Science Foundation (NSF)NSF - Directorate for Geosciences (GEO))	Special thanks to the many volunteers who collected and compiled phytoplankton monitoring data from Auke Bay, AK; Dr. Sherry Tamone for providing training, equipment and laboratory space to run ELISAs; Sonia Ibarra, Daniel Michrowski, Wendel Raymond, Don Thomas, Tyler Thomas and Jared Weems for assisting with benthic sampling surveys; Kate Sullivan for initiating HAB monitoring in Southeast Alaska, and the Sitka Tribe of Alaska and Phytoplankton Monitoring Network for hosting the Southeast Alaska Tribal Toxin (SEATT) workshop. Funding for this project was provided by the NSF Science, Engineering, Education for Sustainability (SEES) Fellowship award #1415195 and by the National Institute of General Medical Sciences of the National Institutes of Health under Award Numbers UL1GM118991, TL4GM118992, or RL5GM118990. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. 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J	Gárate-Lizárraga, I; González-Armas, R; Verdugo-Díaz, G; Okolodkov, YB; Pérez-Cruz, B; Díaz-Ortíz, JA				Garate-Lizarraga, Ismael; Gonzalez-Armas, Rogelio; Verdugo-Diaz, Gerardo; Okolodkov, Yuri B.; Perez-Cruz, Beatriz; Antonio Diaz-Ortiz, Jesils			Seasonality of the dinoflagellate <i>Amphidinium</i> cf. <i>carterae</i> (Dinophyceae: Amphidiniales) in Bahia de la Paz, Gulf of California	MARINE POLLUTION BULLETIN			English	Article						Amphidinium carterae; Bloom; Hyaline cysts; Ichthyotoxins; Tychoplanktonic dinoflagellates; Zooplankton fecal pellets	MARINE DINOFLAGELLATE; TOXIC DINOFLAGELLATE; GENUS AMPHIDINIUM; SP-NOV; GYMNODINIALES; BLOOM; HULBURT; PHYTOPLANKTON; PROLIFERATION; MORPHOLOGY	Monthly phytoplankton samples were collected from January 2013 to December 2015 at a fixed sampling site in Bahia de La Paz, Gulf of California. During this study 26 samplings were Amphidinium cf. carterae positive. The highest densities of A. cf. carterae (754.2 x 10(3) to 1022.4 x 10(3) cells L-1) were recorded during a bloom detected in January 2015 when water temperatures were 20-22 degrees C. This dinoflagellate showed a well-marked seasonal variation, being found mainly from November to April. Blooms of the species were linked to the up-welled water due to the northwesterly wind. Cysts surrounded by a mucilaginous membrane of A. cf. carterae were found. We also observed these hyaline cysts inside zooplankton fecal pellets. Other benthic/tychoplanktonic dinoflagellates and diatoms, including some potentially toxic species were also found. The occurrence of blooms of A. cf. carterae in Bahia de La Paz could represent a risk for aquaculture activities and human health.	[Garate-Lizarraga, Ismael; Gonzalez-Armas, Rogelio; Verdugo-Diaz, Gerardo] Inst Politecn Nacl, Ctr Interdisciplinario Ciencias Marinas CICIMAR I, Av IPN S-N, La Paz 23096, Baja Calif Sur, Mexico; [Okolodkov, Yuri B.] Univ Veracruzana, Inst Ciencias Marinas & Pesquerias ICIMAP UV, Calle Mar Mediterraneo 314, Boca Del Rio 94294, Veracruz, Mexico; [Perez-Cruz, Beatriz; Antonio Diaz-Ortiz, Jesils] Lab Estatal Salud Pabl Dr Gale Soberon & Parra, Blvd Vicente Guerrero Esq Juan R Escudero, Acapulco 39715, Guerrero, Mexico	Instituto Politecnico Nacional - Mexico; Universidad Veracruzana	Gárate-Lizárraga, I (通讯作者)，Inst Politecn Nacl, Ctr Interdisciplinario Ciencias Marinas CICIMAR I, Av IPN S-N, La Paz 23096, Baja Calif Sur, Mexico.	igarate@ipn.mx	Gárate-Lizárraga, Ismael/GRS-5815-2022	Garate-Lizarraga, Ismael/0000-0002-3835-183X	Instituto Politecnico Nacional, Mexico [SIP-20130549, SIP-20141181, SIP-20141095, SIP-20150537, SIP-20150500]	Instituto Politecnico Nacional, Mexico	The study was funded by the Instituto Politecnico Nacional, Mexico (Projects: SIP-20130549, SIP-20141181, SIP-20141095, SIP-20150537 and SIP-20150500).	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SEP	2019	146						532	541		10.1016/j.marpolbul.2019.06.073	http://dx.doi.org/10.1016/j.marpolbul.2019.06.073			10	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	JC0VX	31426190				2025-03-11	WOS:000488999000062
J	Fagin, E; Bravo, I; Garrido, JL; Rodriguez, F; Figueroa, RI				Fagin, Elena; Bravo, Isabel; Luis Garrido, Jose; Rodriguez, Francisco; Figueroa, Rosa I.			<i>Scrippsiella acuminata</i> versus <i>Scrippsiella ramonii</i>: A Physiological Comparison	CYTOMETRY PART A			English	Article						Scrippsiella; cell cycle; life cycle; flow cytometry; genome size	HARMFUL ALGAL BLOOMS; RED TIDE DINOFLAGELLATE; LIFE-CYCLE; CELL-CYCLE; MARINE DINOFLAGELLATE; TROCHOIDEA DINOPHYCEAE; TAXONOMIC CLARIFICATION; GENUS ALEXANDRIUM; CYST PRODUCTION; DNA-CONTENT	Scrippsiella is a cosmopolitan dinoflagellate genus that is able to form Harmful Algal Blooms in coastal waters. The large physiological, morphological, and genetic variability that characterizes this genus suggest the existence of cryptic species. In this study, flow cytometric analyses were carried out to compare the cell cycle and life cycle of two Scrippsiella strains from two different species: Scrippsiella ramonii (VGO1053) and Scrippsiella acuminata (S3V). Both species were also investigated by internally transcribed spacer rDNA sequencing and high-performance liquid chromatography-based pigment analyses. The reddish-brown color of S. acuminata and yellowish-green hue of S. ramonii were consistent with the quantitative differences determined in their pigment profiles. Our results indicate that the cell cycle is light-controlled and that it differs in the two species. S-phase was detected during the light period in both, whereas the G2/M phase occurred during the light period in S. ramonii but under dark conditions in S. acuminata. The detection of 4C stages, mobile zygotes (planozygotes), and resting cysts in S. ramonii (nonclonal) provided convincing evidence of sexuality in this species. Sexual related processes were not found in the clonal S. acuminata strain, suggesting its heterothallic behavior (i.e., the need for outcrossing). The differences in the genome size of these species were examined as well. (c) 2019 The Authors. Cytometry Part A published by Wiley Periodicals, Inc. on behalf of International Society for Advancement of Cytometry.	[Fagin, Elena; Bravo, Isabel; Rodriguez, Francisco; Figueroa, Rosa I.] IEO, Dept Microalgas Nocivas, Vigo, Spain; [Luis Garrido, Jose] CSIC, IIM, Grp Fotobiol & Pigmentos Fitoplancton, Vigo, Spain	Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM)	Fagin, E (通讯作者)，CREAF, Campus UAB,Edificio C, Bellaterra 08193, Spain.	elena.fagin@gmail.com	Rodriguez, Francisco/A-5934-2019; Figueroa, Rosa/M-7598-2015; Garrido, Jose Luis/L-6282-2014	Rodriguez, Francisco/0000-0002-6918-4771; Fagin Garcia, Elena/0000-0001-8777-9907; Figueroa, Rosa/0000-0001-9944-7993; Garrido, Jose Luis/0000-0001-8773-1866				ADAMICH M, 1976, PLANTA, V130, P1, DOI 10.1007/BF00390837; Aguilar-Maldonado J.A., 2017, PROCEEDINGS, V2, P187, DOI [10.3390/ecws-2-04956, DOI 10.3390/ECWS-2-04956]; Alkawri A, 2016, MAR POLLUT BULL, V112, P225, DOI 10.1016/j.marpolbul.2016.08.015; Alonso-Rodríguez R, 2003, AQUACULTURE, V219, P317, DOI 10.1016/S0044-8486(02)00509-4; ANDERSON DM, 1983, MAR BIOL, V76, P179, DOI 10.1007/BF00392734; 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Part A	SEP	2019	95	9					985	996		10.1002/cyto.a.23849	http://dx.doi.org/10.1002/cyto.a.23849			12	Biochemical Research Methods; Cell Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biochemistry & Molecular Biology; Cell Biology	JB5ZK	31273941	Green Published, hybrid			2025-03-11	WOS:000488644200007
J	Geng, HX; Yu, RC; Zhang, QC; Yan, T; Kong, FZ; Zhou, MJ				Geng Huixia; Yu Rencheng; Zhang Qingchun; Yan Tian; Kong Fanzhou; Zhou Mingjiang			Tracing the settlement region of massive floating green algae in the Yellow Sea	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						green tide; biomarker; sterol; Ulva prolifera	ENTEROMORPHA-PROLIFERA; ORGANIC GEOCHEMISTRY; DINOFLAGELLATE CYSTS; SEASONAL-VARIATION; PHYTOL FRACTIONS; CALANUS-SINICUS; MARINE-ALGAE; FATTY-ACID; STEROLS; 28-ISOFUCOSTEROL	Outbreaks of large-scale green tides formed by Ulva prolifera in the Yellow Sea (YS) cause heavy ecological damages and huge economic losses. However, the ecological consequences of green tides remain poorly understood due to the lack of knowledge on the settlement region of massive green algae floating in the YS. In this study, we established a method to trace the settlement region of floating green algae, using 28-isofucosterol preserved in sediment as the specific biomarker for green algae. Sterols including 28-isofucosterol in surface sediment samples collected during an investigation in the YS and the Bohai Sea (BS) in August 2015 were analyzed using gas chromatography coupled with a mass spectrometer (GC-MS). Based on the content of 28-isofucosterol in sediment samples, the potential settlement region of floating green algae was identified in the sea area southeast to the Shandong Peninsula around the sampling site H06 (122.66 degrees E, 36.00 degrees N). This paper presents a first result on the settlement region of floating green algae in the YS for providing a solid basis to elucidate the ecological consequences of green tides in the area.	[Geng Huixia; Yu Rencheng; Zhang Qingchun; Yan Tian; Kong Fanzhou; Zhou Mingjiang] Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China; [Geng Huixia; Yu Rencheng; Zhang Qingchun; Yan Tian; Kong Fanzhou] Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China; [Yu Rencheng] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Geng Huixia; Yu Rencheng; Zhang Qingchun; Yan Tian; Kong Fanzhou] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences	Yu, RC (通讯作者)，Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China.; Yu, RC (通讯作者)，Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China.; Yu, RC (通讯作者)，Univ Chinese Acad Sci, Beijing 100049, Peoples R China.; Yu, RC (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China.	rcyu@qdio.ac.cn	Geng, Hui-Xia/X-5380-2018; Yu, Rencheng/J-4450-2017	Yu, Rencheng/0000-0001-6430-9224	National Natural Science Foundation of China [41676106]; Program of the Qingdao National Laboratory for Marine Science and Technology [2016ASKJ02]; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) [2018SDKJ0504]; Marine Ecology and Environmental Science Function Laboratory Youth Talent Cultivation Project of Qingdao National Laboratory for Marine Science and Technology [LMEES-YTSP-2018-01-02]; Shandong Province; National Natural Science Foundation of China (NSFC) [U1606404]; Qingdao Postdoctoral Research Project	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Program of the Qingdao National Laboratory for Marine Science and Technology; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao); Marine Ecology and Environmental Science Function Laboratory Youth Talent Cultivation Project of Qingdao National Laboratory for Marine Science and Technology; Shandong Province; National Natural Science Foundation of China (NSFC)(National Natural Science Foundation of China (NSFC)); Qingdao Postdoctoral Research Project	Supported by the National Natural Science Foundation of China (No. 41676106), the Program of the Qingdao National Laboratory for Marine Science and Technology (No. 2016ASKJ02), the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) (No. 2018SDKJ0504), the Qingdao Postdoctoral Research Project, the Marine Ecology and Environmental Science Function Laboratory Youth Talent Cultivation Project of Qingdao National Laboratory for Marine Science and Technology (No. LMEES-YTSP-2018-01-02), and the project jointly supported by Shandong Province and the National Natural Science Foundation of China (NSFC) (No. U1606404)	Balakrishna K, 2005, BIOGEOCHEMISTRY, V73, P457, DOI 10.1007/s10533-004-0879-2; 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Geophys. Res. Atmos, V115, pD7, DOI [10.1029/2009JD012814, DOI 10.1029/2009JD012814]; Zhou MJ, 2015, ESTUAR COAST SHELF S, V163, P3, DOI 10.1016/j.ecss.2015.06.023	46	18	23	2	70	SCIENCE PRESS	BEIJING	16 DONGHUANGCHENGGEN NORTH ST, BEIJING, 100717, PEOPLES R CHINA	2096-5508	2523-3521		J OCEANOL LIMNOL	J. Oceanol. Limnol.	SEP	2019	37	5					1555	1565		10.1007/s00343-019-8348-x	http://dx.doi.org/10.1007/s00343-019-8348-x			11	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	IV8RT					2025-03-11	WOS:000484533400008
J	Taylor, PD; Di Martino, E; Martha, SO				Taylor, Paul D.; Di Martino, Emanuela; Martha, Silviu O.			Colony growth strategies, dormancy and repair in some Late Cretaceous encrusting bryozoans: insights into the ecology of the Chalk seabed	PALAEOBIODIVERSITY AND PALAEOENVIRONMENTS			English	Article						Bryozoa; Cretaceous; Ecology; Seasonality	COMPETITION; FOSSIL; SEASONALITY; CYCLOSTOME; HISTORY; CYCLES; GENERA	Bryozoans are among the most common macrofossils in the Late Cretaceous Chalk. They include many species that encrusted hard substrates, notably echinoid tests, forming habitat islands on the Chalk seabed. The growth strategies adopted by these bryozoans, as well as the occurrence of reparative structures, provides evidence of the conditions experienced by bryozoans and other benthic animals during the accumulation of this unique pelagic sediment deposited over large areas of the continental shelf. Here, we use historical material in the Natural History Museum, London, to provide qualitative evidence that whereas available substrates, including irregular echinoids, were long-lasting, most individual bryozoan colonies were probably short-lived. Some cheilostome species produced heavily calcified polymorphic zooids at the outer edges of the colony that persisted after loss of the feeding autozooids and became the source of regenerative colony growth. Short-term (possibly annual) periodicity is suggested in the benthic environment experienced by encrusting bryozoans, which may have possibly been a result of cyclical variations in dinoflagellate food supply and/or swamping by unpalatable and potentially poisonous coccolithospheres.	[Taylor, Paul D.; Di Martino, Emanuela] Nat Hist Museum, Dept Earth Sci, Cromwell Rd, London SW7 5BD, England; [Martha, Silviu O.] Nat Hist Museum, Dept Life Sci, Cromwell Rd, London SW7 5BD, England	Natural History Museum London; Natural History Museum London	Taylor, PD (通讯作者)，Nat Hist Museum, Dept Earth Sci, Cromwell Rd, London SW7 5BD, England.	p.taylor@nhm.ac.uk; e.di-martino@nhm.ac.uk; s.martha@nhm.ac.uk	Di Martino, Emanuela/AAF-2557-2020; Taylor, Paul/ABE-1167-2020; Martha, Silviu O./F-9686-2016	Di Martino, Emanuela/0000-0002-3892-4036; Martha, Silviu O./0000-0002-0540-6013; Taylor, Paul/0000-0002-3127-080X	Leverhulme Trust [RPG-2015-036, RPG-2016-429]	Leverhulme Trust(Leverhulme Trust)	EDM was supported by research grant RPG-2015-036 and SOM by research grant RPG-2016-429, both grants generously provided by The Leverhulme Trust.	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J	Liu, Y; Chen, TT; Song, SQ; Li, CW				Liu, Yun; Chen, Tiantian; Song, Shuqun; Li, Caiwen			Variation in biochemical composition during encystment of the planktonic dinoflagellate <i>Akashiwo sanguinea</i> in N-limited cultures	MARINE BIOLOGY			English	Article							HARMFUL ALGAL BLOOMS; MARINE DINOFLAGELLATE; PHOSPHORUS STARVATION; GROWTH-PHASE; LIFE-CYCLE; FATTY-ACID; NITROGEN; ESTUARY; TEMPERATURE; NUTRITION	The planktonic dinoflagellate Akashiwo sanguinea is a commonly observed bloom-forming species in estuarine and coastal waters worldwide. Large scales of A. sanguinea bloom cause the mass mortality of fish, shellfish, and sea birds. The formation of resting cysts plays as a potential vector for its wide distribution and frequent recurrence of blooms; however, the biochemical characteristics of algal cells during their life cycle remain unclear. For the first time, the variations in cellular chlorophyll a (Chl a), protein, carbohydrate, and total lipid contents during encystment of A. sanguinea cultured in different nitrate concentrations, namely 0-, 25-, 50-, 100-, 200-, and 833-mu M N-added treatment, were studied in the present study. The results indicated that resting cysts were formed in all the N treatments, with the highest encystment ratio of 3.34 +/- 0.57% observed in the 100-mu M N-added treatment, and the lowest rate of 0.80 +/- 0.03% observed in the 883-mu M N-added treatment. The levels of the four biochemical components varied significantly during the encystment process. The Chl a and protein levels were significantly lower in newly formed cysts than in vegetative cells; however, continuous accumulation of carbohydrates and total lipids occurred with the algal growth, particularly of carbohydrates in the resting cysts, which was more than tenfold greater than those in the vegetative cells. Low initial N concentrations were more favorable for carbohydrate accumulation in cysts than high N concentrations. The accumulated components may play vital roles for the substance of A. sanguinea during resting stage. The results provided fundamental information for an improved understanding of the physiological response of A. sanguinea during encystment.	[Liu, Yun; Chen, Tiantian; Song, Shuqun; Li, Caiwen] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China; [Liu, Yun; Chen, Tiantian; Song, Shuqun; Li, Caiwen] Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China; [Liu, Yun; Chen, Tiantian; Song, Shuqun; Li, Caiwen] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Shandong, Peoples R China; [Li, Caiwen] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Li, CW (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China.; Li, CW (通讯作者)，Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China.; Li, CW (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Shandong, Peoples R China.; Li, CW (通讯作者)，Univ Chinese Acad Sci, Beijing 100049, Peoples R China.	cwli@qdio.ac.cn	Chen, Tiantian/KFR-4471-2024; Liu, Yun/Q-1757-2019	Li, Caiwen/0000-0003-3974-2522	National Natural Science Foundation of China (NSFC) [41506141]; National Key R&D Program of China [2017YFC1404300]; Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao) [LMEES-YTSP-2018-01-06]; NSFC-Shandong Joint Fund for Marine Science Research Center [U1606404]	National Natural Science Foundation of China (NSFC)(National Natural Science Foundation of China (NSFC)); National Key R&D Program of China; Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao); NSFC-Shandong Joint Fund for Marine Science Research Center	This work was supported by the National Natural Science Foundation of China (NSFC, Grant No. 41506141), National Key R&D Program of China (Grant No. 2017YFC1404300), the Youth Talent Support Program of the Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao, Grant No. LMEES-YTSP-2018-01-06), and the NSFC-Shandong Joint Fund for Marine Science Research Center (Grant No. U1606404).	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Biol.	SEP	2019	166	9							120	10.1007/s00227-019-3569-2	http://dx.doi.org/10.1007/s00227-019-3569-2			12	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	IU6IJ					2025-03-11	WOS:000483689700002
J	Tang, YZ; Ma, ZP; Hu, ZX; Deng, YY; Yang, AA; Lin, SH; Yi, L; Chai, ZY; Gobler, CJ				Tang, Ying Zhong; Ma, Zhaopeng; Hu, Zhangxi; Deng, Yunyan; Yang, Aoao; Lin, Siheng; Yi, Liang; Chai, Zhaoyang; Gobler, Christopher J.			3,000 km and 1,500-year presence of <i>Aureococcus anophagefferens</i> reveals indigenous origin of brown tides in China	MOLECULAR ECOLOGY			English	Article						Aureococcus anophagefferens; brown tide; geographic distribution; harmful algal blooms; resting stage; sediment dating	POLYMERASE-CHAIN-REACTION; 18S RIBOSOMAL-RNA; BALLAST WATER; GYMNODINIUM-CATENATUM; AUREOUMBRA-LAGUNENSIS; DINOFLAGELLATE CYSTS; ALGAE AUREOCOCCUS; DARK SURVIVAL; FORMING ALGA; HARMFUL	The nonmotile, spherical, picoplanktonic (2-mu m-sized) pelagophyte Aureococcus anophagefferens has caused numerous harmful blooms ("brown tides") across global marine ecosystems. Blooms have developed along the east coast of the USA since 1985, a limited number of times in South Africa around 1997, and frequently in China since 2009. As a consequence, the harmful blooms have caused massive losses in aquaculture and coastal ecosystems, particularly mortalities in cultured shellfish. Therefore, whether A. anophagefferens was recently introduced to China via natural/artificial transport of resting stage cells or has been an indigenous species has become a question of profound ecological significance and broad interest, which motivated our extensive investigation on the geographic and historical presence of this species in the seas of China. We applied a combined approach of extensive PCR-based detection and sequencing, germination experiments and monoclonal antibody staining of germlings to samples of surface sediment and sediment core (dated via combined isotopic measurements) collected from all four seas of China, and searched the supplementary data set of a recent Science publication. We discovered that A. anophagefferens does have a resting stage in the sediment, but it also has a wide geographic distribution both in China (covering a range of similar to 30 degrees in latitude, similar to 15.7 degrees in longitude and 2.5-3,456 m in water depth; temperate to tropical and coastal to open oceans) and in almost all oceans of the world and a historical presence of >1,500 years in the Bohai Sea, China. The work revealed that A. anophagefferens is not a recently introduced, but an indigenous species in China and has in fact a globally cosmopolitan distribution.	[Tang, Ying Zhong; Ma, Zhaopeng; Hu, Zhangxi; Deng, Yunyan; Yang, Aoao; Lin, Siheng; Chai, Zhaoyang] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Shandong, Peoples R China; [Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Shandong, Peoples R China; [Ma, Zhaopeng; Yang, Aoao; Lin, Siheng] Univ Chinese Acad Sci, Beijing, Peoples R China; [Yi, Liang] Tongji Univ, State Key Lab Marine Geol, Shanghai, Peoples R China; [Gobler, Christopher J.] SUNY Stony Brook, Sch Marine & Atmospher Sci, New York, NY USA; [Yang, Aoao] Linyi Univ, Shandong Prov Key Lab Water & Soil Conservat & En, Middle Part Shuangling Rd, Linyi, Shandong, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Tongji University; State University of New York (SUNY) System; Stony Brook University; Linyi University	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, 7 Nanhai Rd, Qingdao 266071, Shandong, Peoples R China.	yingzhong.tang@qdio.ac.cn	Chai, Zhaoyang/F-7485-2017; 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Stauffer BA, 2008, APPL ENVIRON MICROB, V74, P6931, DOI 10.1128/AEM.00996-08; Tanabe AS, 2016, MOL ECOL RESOUR, V16, P402, DOI 10.1111/1755-0998.12459; Tang YZ, 2015, J PHYCOL, V51, P298, DOI 10.1111/jpy.12274; Tang YZ, 2012, HARMFUL ALGAE, V20, P71, DOI 10.1016/j.hal.2012.08.001; Tang YZ, 2010, P NATL ACAD SCI USA, V107, P20756, DOI 10.1073/pnas.1009566107; Wang LP, 2016, INDIAN J MICROBIOL, V56, P491, DOI 10.1007/s12088-016-0619-z; Wüst PK, 2016, APPL ENVIRON MICROB, V82, P2595, DOI 10.1128/AEM.00019-16; Wurch LL, 2011, ENVIRON MICROBIOL, V13, P468, DOI 10.1111/j.1462-2920.2010.02351.x; Wylezich C, 2010, PROTIST, V161, P342, DOI 10.1016/j.protis.2010.01.003; Zhang QC, 2012, HARMFUL ALGAE, V19, P117, DOI 10.1016/j.hal.2012.06.007	51	29	33	8	65	WILEY	HOBOKEN	111 RIVER ST, HOBOKEN 07030-5774, NJ USA	0962-1083	1365-294X		MOL ECOL	Mol. Ecol.	SEP	2019	28	17					4065	4076		10.1111/mec.15196	http://dx.doi.org/10.1111/mec.15196		AUG 2019	12	Biochemistry & Molecular Biology; Ecology; Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biochemistry & Molecular Biology; Environmental Sciences & Ecology; Evolutionary Biology	IZ4ZD	31468654				2025-03-11	WOS:000484206400001
J	Morse, D				Morse, David			A Transcriptome-based Perspective of Meiosis in Dinoflagellates	PROTIST			English	Article						Dinoflagellate; meiosis; conserved genes; Symbiodinium kawagutii; Fugacium kawagutii	SEXUAL REPRODUCTION; SYMBIODINIUM; BIOLOGY; ECOLOGY	There is increasing interest in the possibility of sexual recombination in dinoflagellates, especially those symbiotic with coral, since recombination may be able to augment genetic diversity and reduce levels of coral bleaching. Several previous studies have addressed this in Symbiodinium by querying sequence databanks with a list of 51 genes termed a meiosis detection toolkit. Here, we have constructed an expanded list of 307 genes involved in meiosis in budding yeast. We find the genes involved in the major regulatory steps in yeast meiosis are also found in dinoflagellates, as are many of the genes involved in recombination. In contrast, few genes involved in forming the synaptonemal complex or forming spores are conserved. We further note that the meiosis-related genes absent in dinoflagellates are also as a general rule absent from other protists in the closely related apicomplexa and the ciliates. We conclude the symbiotic dinoflagellates are as able to undergo meiosis as are other protists. (C) 2019 Elsevier GmbH. All rights reserved.	[Morse, David] Univ Montreal, Inst Rech Biol Vegetale, Dept Biol Sci, Montreal, PQ, Canada	Universite de Montreal	Morse, D (通讯作者)，Univ Montreal, Inst Rech Biol Vegetale, Dept Biol Sci, Montreal, PQ, Canada.	david.morse@umontreal.ca			National Science and Engineering Research Council of Canada [171382-03]	National Science and Engineering Research Council of Canada(Natural Sciences and Engineering Research Council of Canada (NSERC))	Financial support from the National Science and Engineering Research Council of Canada (grant number 171382-03 to D.M.) is gratefully acknowledged.	Beauchemin M, 2012, P NATL ACAD SCI USA, V109, P15793, DOI 10.1073/pnas.1206683109; Bravo Isabel, 2014, Microorganisms, V2, P11; Chepurnov VA, 2004, INT REV CYTOL, V237, P91; Chi JY, 2014, J EUKARYOT MICROBIOL, V61, P322, DOI 10.1111/jeu.12110; Figueroa RI, 2005, J PHYCOL, V41, P370, DOI 10.1111/j.1529-8817.2005.04150.x; Fritz HM, 2012, PLOS ONE, V7, DOI 10.1371/journal.pone.0029998; Guttery DS, 2012, PLOS PATHOG, V8, DOI 10.1371/journal.ppat.1002404; Hong S, 2019, J MICROBIOL, V57, P221, DOI 10.1007/s12275-019-8541-9; LaJeunesse TC, 2001, J PHYCOL, V37, P866, DOI 10.1046/j.1529-8817.2001.01031.x; LaJeunesse TC, 2018, CURR BIOL, V28, P2570, DOI 10.1016/j.cub.2018.07.008; Lauritano C, 2017, SCI REP-UK, V7, DOI 10.1038/s41598-017-12092-1; Levin RA, 2016, MOL BIOL EVOL, V33, P2201, DOI 10.1093/molbev/msw119; Liu HL, 2018, COMMUN BIOL, V1, DOI 10.1038/s42003-018-0098-3; Lively CM, 2014, J EVOLUTION BIOL, V27, P1292, DOI 10.1111/jeb.12354; Loidl J, 2016, SEMIN CELL DEV BIOL, V54, P126, DOI 10.1016/j.semcdb.2016.02.021; Mercier R, 2015, ANNU REV PLANT BIOL, V66, P297, DOI 10.1146/annurev-arplant-050213-035923; O'Hara SP, 2011, MICROBES INFECT, V13, P721, DOI 10.1016/j.micinf.2011.03.008; Okuda S, 2008, NUCLEIC ACIDS RES, V36, pW423, DOI 10.1093/nar/gkn282; Owens S, 2018, METHOD ENZYMOL, V601, P275, DOI 10.1016/bs.mie.2017.12.005; PFIESTER LA, 1976, J PHYCOL, V12, P234; Rabitsch KP, 2001, CURR BIOL, V11, P1001, DOI 10.1016/S0960-9822(01)00274-3; Roy S, 2014, BMC BIOL, V12, DOI 10.1186/s12915-014-0107-z; Schurko AM, 2008, BIOESSAYS, V30, P579, DOI 10.1002/bies.20764; Shoguchi E, 2013, CURR BIOL, V23, P1399, DOI 10.1016/j.cub.2013.05.062; Suggett DJ, 2017, TRENDS ECOL EVOL, V32, P735, DOI 10.1016/j.tree.2017.07.013; Von Stosch HA., 1973, Br Phycol J, V8, P105; Wilkinson SP, 2015, BMC EVOL BIOL, V15, DOI 10.1186/s12862-015-0325-1; Wong JTY, 2019, MICROORGANISMS, V7, DOI 10.3390/microorganisms7020027; Yamashita A, 2017, COLD SPRING HARB PRO, V2017	29	7	8	2	12	ELSEVIER GMBH	MUNICH	HACKERBRUCKE 6, 80335 MUNICH, GERMANY	1434-4610			PROTIST	Protist	AUG	2019	170	4					397	403		10.1016/j.protis.2019.06.003	http://dx.doi.org/10.1016/j.protis.2019.06.003			7	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	JE7VO	31521988				2025-03-11	WOS:000490898600006
J	Ishikawa, A; Wakabayashi, H; Kim, YO				Ishikawa, Akira; Wakabayashi, Hiroaki; Kim, Young-Ok			A biological tool for indicating hypoxia in coastal waters: calcareous walled-type to naked-type cysts of <i>Scrippsiella</i> <i>trochoidea</i> (Dinophyceae)	PLANKTON & BENTHOS RESEARCH			English	Article						Biological indicator; DO; hypoxic condition; pH; Scrippsiella trochoidea cyst	DINOFLAGELLATE CYSTS; OCEAN ACIDIFICATION; CONSEQUENCES; SEDIMENTS; BAY; PH	Scrippsiella trochoidea produces a calcareous walled cyst with spines during its life history. It has been recently reported that the calcareous wall can be decalcified under acidified conditions in coastal areas linked to hypoxia caused by bacterial activities. In this study, in order to determine whether the calcareous cysts can be a biological tool for indicating an in situ hypoxic environment, the morphology of S. trochoidea cysts in the surface sediments of Ise Bay, Japan, was examined in relation to dissolved oxygen concentrations in the bottom water. The surface sediments were collected from the inner to outer parts of the bay in May 2014 and June 2018. The living cysts of S. trochoidea were counted separately into two morphotypes: cyst with calcareous wall (calcareous walled-type cyst) and without the wall (naked-type cyst). The proportions (%) of naked-type cyst abundance in the total living cyst population showed an increasing tendency in the hypoxic environment of the inner and central parts of Ise Bay, but not in the normoxic environment at the mouth. This result supports the supposition that the naked-type cyst of S. trochoidea can be used as a biological indicator for the assessment of hypoxia in coastal areas.	[Ishikawa, Akira; Wakabayashi, Hiroaki] Mie Univ, Grad Sch Bioresources, 1577 Kurima Machiya, Tsu, Mie 5148507, Japan; [Kim, Young-Ok] Korea Inst Ocean Sci & Technol, Marine Environm & Climate Res Div, Busan 49111, South Korea; [Wakabayashi, Hiroaki] Japan Coast Guard, Hydrog & Oceanog Dept, Chiyoda Ku, Tokyo 1008932, Japan	Mie University; Korea Institute of Ocean Science & Technology (KIOST)	Ishikawa, A (通讯作者)，Mie Univ, Grad Sch Bioresources, 1577 Kurima Machiya, Tsu, Mie 5148507, Japan.	ishikawa@bio.mie-u.ac.jp	KIM, YOUNG JIN/E-9374-2011		Japan Society for the Promotion of Science (JSPS) (KAKENHI) [25450256, 16K07823]; Research Foundation of Korea [NRF-2016M1A5A1027457]; Grants-in-Aid for Scientific Research [16K07823, 25450256] Funding Source: KAKEN	Japan Society for the Promotion of Science (JSPS) (KAKENHI)(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Research Foundation of Korea(National Research Foundation of Korea); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	We are grateful to the captain and crew of the T/S Seisui Maru of Mie University and our colleagues at the university for their support at sea. We also thank Mie Prefecture Fisheries Research Institute for providing valuable oceanographic data concerning Ise Bay. This work was partially supported by a Grant -in -Aid for Scientific Research (C) from the Japan Society for the Promotion of Science (JSPS) (KAKENHI; Nos. 25450256 and 16K07823) and by the Research Foundation of Korea (NRF-2016M1A5A1027457).	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BIODIVERSITY LAB, 3-1-1 MINATOMACHI, HAKODATE, HOKKAIDO, 041-8611, JAPAN	1880-8247	1882-627X		PLANKTON BENTHOS RES	Plankton Benthos Res.	AUG	2019	14	3					161	169		10.3800/pbr.14.161	http://dx.doi.org/10.3800/pbr.14.161			9	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	IZ8HZ		gold			2025-03-11	WOS:000487346400004
J	Shang, LX; Hu, ZX; Deng, YY; Liu, YY; Zhai, XY; Chai, ZY; Liu, XH; Zhan, ZF; Dobbs, FC; Tang, YZ				Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Liu, Yuyang; Zhai, Xinyu; Chai, Zhaoyang; Liu, Xiaohan; Zhan, Zifeng; Dobbs, Fred C.; Tang, Ying Zhong			Metagenomic Sequencing Identifies Highly Diverse Assemblages of Dinoflagellate Cysts in Sediments from Ships' Ballast Tanks	MICROORGANISMS			English	Article						harmful algal blooms; sediment; metabarcoding; invasive species; dinoflagellate resting cysts; Great Lakes; Chesapeake Bay; Margalefidinium polykrikoides; single-cell PCR; ballast water	SP-NOV DINOPHYCEAE; HARMFUL ALGAL BLOOMS; GYMNODINIUM-CATENATUM; COCHLODINIUM-POLYKRIKOIDES; FORMING DINOFLAGELLATE; SCRIPPSIELLA-HANGOEI; PARALYTIC SHELLFISH; LAKE TOVEL; GEN.-NOV.; COMB-NOV	Ships' ballast tanks have long been known as vectors for the introduction of organisms. We applied next-generation sequencing to detect dinoflagellates (mainly as cysts) in 32 ballast tank sediments collected during 2001-2003 from ships entering the Great Lakes or Chesapeake Bay and subsequently archived. Seventy-three dinoflagellates were fully identified to species level by this metagenomic approach and single-cell polymerase chain reaction (PCR)-based sequencing, including 19 toxic species, 36 harmful algal bloom (HAB) forming species, 22 previously unreported as producing cysts, and 55 reported from ballast tank sediments for the first time (including 13 freshwater species), plus 545 operational taxonomic units (OTUs) not fully identified due to a lack of reference sequences, indicating tank sediments are repositories of many previously undocumented taxa. Analyses indicated great heterogeneity of species composition among samples from different sources. Light and scanning electron microscopy and single-cell PCR sequencing supported and confirmed results of the metagenomic approach. This study increases the number of fully identified dinoflagellate species from ballast tank sediments to 142 (>50% increase). From the perspective of ballast water management, the high diversity and spatiotemporal heterogeneity of dinoflagellates in ballast tanks argues for continuing research and stringent adherence to procedures intended to prevent unintended introduction of non-indigenous toxic and HAB-forming species.	[Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Liu, Yuyang; Zhai, Xinyu; Chai, Zhaoyang; Liu, Xiaohan; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China; [Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Chai, Zhaoyang; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China; [Shang, Lixia; Hu, Zhangxi; Deng, Yunyan; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China; [Liu, Yuyang; Zhai, Xinyu; Liu, Xiaohan] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Zhan, Zifeng] Chinese Acad Sci, Inst Oceanol, Dept Marine Organism Taxon & Phylogeny, Qingdao 266071, Shandong, Peoples R China; [Dobbs, Fred C.] Old Dominion Univ, Dept Ocean Earth & Atmospher Sci, Norfolk, VA 23529 USA	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Chinese Academy of Sciences; Institute of Oceanology, CAS; Old Dominion University	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Shandong, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Zhang, Xing/ACQ-5035-2022; Chai, Zhaoyang/F-7485-2017; Li, Yang/KFB-5350-2024	Hu, Zhangxi/0000-0002-4742-4973; Deng, Yunyan/0000-0001-5967-3611	NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]; National Natural Science Foundation of China [41476142, 61533011, 41606126, 41506143]; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology [2016ASKJ02]; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology [LMEES-CTSP-2018-1]	NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology	This research was funded by the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences, grant number U1606404; the National Natural Science Foundation of China, grant numbers 41476142, 61533011, 41606126, and 41506143; the Scientific and Technological Innovation Project Financially Supported by Qingdao National Laboratory for Marine Science and Technology, grant number 2016ASKJ02; and Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, grant number LMEES-CTSP-2018-1.	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J	Jang, SH; Jeong, HJ; Chon, JK				Jang, Se Hyeon; Jeong, Hae Jin; Chon, Jae Kyung			De novo transcriptome of the newly described phototrophic dinoflagellate Yihiella yeosuensis: comparison between vegetative cells and cysts	MARINE BIOLOGY			English	Article							COCHLODINIUM-POLYKRIKOIDES; POLYKETIDE SYNTHASES; CHEMICAL-COMPOSITION; LIFE-CYCLE; PROTEIN; MOTILITY; RNA; DINOPHYCEAE; MIXOTROPHY; PATTERNS	Dinoflagellates are often responsible for red tides or harmful algal blooms. Many dinoflagellates move quickly to capture prey cells, escape from predation, and conduct diurnal vertical migrations, but they form cysts (non-motile stage) when growth conditions are not favorable. To investigate differences in gene expression between vegetative cells and cysts of dinoflagellates, transcriptomes of the newly described dinoflagellate Yihiella yeosuensis, one of the fastest dinoflagellates, at the cysts and vegetative cells were de novo assembled. The gene expression profiles of Y. yeosuensis showed 5479 up-regulated and 4790 down-regulated significantly differentially expressed genes, when cells changed from the vegetative cells to cysts. In particular, polyketide synthase' and cell-wall biogenesis' genes, related to anti-predation, were highly up-regulated, whereas flagellum-related genes, related to motility, were generally down-regulated. Among the flagellum-related genes of Y. yeosuensis, the central pair' and radial spoke' genes, related to direct flagellar movement, were most down-regulated genes. When approximately a hundred flagellum-related genes of motile and non-motile microalgae and plants were analyzed, the number of the genes increased with increasing motility, and furthermore, there was a considerable difference in the presence of the central pair' and radial spoke' genes among the motile microalgae. Therefore, high down-regulation of the central pair' and radial spoke' genes when Y. yeosuensis cells change from the motile to non-motile stage is possibly related to the presence of these genes in microalgae and plants in their evolution. Conclusively, when Y. yeosuensis form cysts, motility might trade off with anti-predation.	[Jang, Se Hyeon; Jeong, Hae Jin] Seoul Natl Univ, Coll Nat Sci, Sch Earth & Environm Sci, Seoul 08826, South Korea; [Jeong, Hae Jin] Adv Inst Convergence Technol, Suwon 16229, Gyeonggi Do, South Korea; [Chon, Jae Kyung] Macrogen Inc, Seoul 08511, South Korea	Seoul National University (SNU); Macrogen, Inc.	Jeong, HJ (通讯作者)，Seoul Natl Univ, Coll Nat Sci, Sch Earth & Environm Sci, Seoul 08826, South Korea.; Jeong, HJ (通讯作者)，Adv Inst Convergence Technol, Suwon 16229, Gyeonggi Do, South Korea.	hjjeong@snu.ac.kr	Jang, Hyeon/AAO-6009-2020; Jeong, hae/B-8908-2009	Jeong, Hae Jin/0000-0003-3310-4335	Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF); National Research Foundation (NRF) - Ministry of Science and ICT [NRF-2015M1A5A1041806, NRF-2017R1E1A1A01074419]	Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF)(Korea Institute of Marine Science & Technology Promotion (KIMST)Ministry of Oceans & Fisheries (MOF), Republic of Korea); National Research Foundation (NRF) - Ministry of Science and ICT(National Research Foundation of Korea)	This research was supported by the useful dinoflagellate program of Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) and the National Research Foundation (NRF) funded by the Ministry of Science and ICT (NRF-2015M1A5A1041806 and NRF-2017R1E1A1A01074419) award to HJJ.	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Biol.	AUG	2019	166	8							104	10.1007/s00227-019-3554-9	http://dx.doi.org/10.1007/s00227-019-3554-9			21	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	IJ1KO					2025-03-11	WOS:000475657500007
J	Lopez, CB; Karim, A; Murasko, S; Marot, M; Smith, CG; Corcoran, AA				Lopez, Cary B.; Karim, Aliza; Murasko, Susan; Marot, Marci; Smith, Christopher G.; Corcoran, Alina A.			Temperature mediates secondary dormancy in resting cysts of <i>Pyrodinium bahamense</i> (Dinophyceae)	JOURNAL OF PHYCOLOGY			English	Article						dinoflagellate; dormancy; germination; life cycle; resting cyst; secondary dormancy	ALEXANDRIUM-TAMARENSE; TAMPA BAY; GYMNODINIUM-CATENATUM; SEXUAL REPRODUCTION; GERMINATION; EXCYSTMENT; PHYTOPLANKTON; GULF; DYNAMICS; MAINE	High-biomass blooms of the toxic dinoflagellate Pyrodinium bahamense occur most summers in Tampa Bay, Florida, USA, posing a recurring threat to ecosystem health. Like many dinoflagellates, P. bahamense forms immobile resting cysts that can be deposited on the seafloor-creating a seed bank that can retain the organism within the ecosystem and initiate future blooms when cysts germinate. In this study, we examined changes in the dormancy status of cysts collected from Tampa Bay and applied lessons from plant ecology to explore dormancy controls. Pyrodinium bahamense cysts incubated immediately after field collection displayed a seasonal pattern in dormancy and germination that matched the pattern of cell abundance in the water column. Newly deposited (surface) cysts and older (buried) cysts exhibited similar germination patterns, suggesting that a common mechanism regulates dormancy expression in new and mature cysts. Extended cool- and warm-temperature conditioning of field-collected cysts altered the cycle of dormancy compared with that of cysts in nature, with the duration of cool temperature exposure being the best predictor of when cysts emerged from dormancy. Extended warm conditioning, on the other hand, elicited a return to dormancy, or secondary dormancy, in nondormant cysts. These results directly demonstrate environmental induction of secondary dormancy in dinoflagellates-a mechanism common and thoroughly documented in higher plants with seasonal growth cycles. Our findings support the hypothesis that a seasonal cycle in cyst germination drives P. bahamense bloom periodicity in Tampa Bay and point to environmentally induced secondary dormancy as an important regulatory factor of that cycle.	[Lopez, Cary B.; Murasko, Susan] Florida Fish & Wildlife Conservat Commiss, Fish & Wildlife Res Inst, 100 8th Ave SE, St Petersburg, FL 33701 USA; [Karim, Aliza] Oregon Inst Marine Biol, POB 5389, Charleston, OR 97420 USA; [Marot, Marci; Smith, Christopher G.] US Geol Survey, 600 4th St S, St Petersburg, FL 33701 USA; [Corcoran, Alina A.] New Mexico Consortium, 4200 W Jemez Rd,Suite 200, Los Alamos, NM 87544 USA	Florida Fish & Wildlife Conservation Commission; United States Department of the Interior; United States Geological Survey	Lopez, CB (通讯作者)，Florida Fish & Wildlife Conservat Commiss, Fish & Wildlife Res Inst, 100 8th Ave SE, St Petersburg, FL 33701 USA.	cary.lopez@myfwc.com	Cloern, James/C-1499-2011	Lopez, Cary/0000-0002-4529-401X; Smith, Christopher/0000-0002-8075-4763; , Alina Corcoran/0009-0001-3851-7668	Tampa Bay Environmental Restoration Fund; Florida Fish and Wildlife Conservation Commission; United States Geological Survey; Coastal/Marine Hazards and Resources Program of the U.S. Geological Survey	Tampa Bay Environmental Restoration Fund; Florida Fish and Wildlife Conservation Commission; United States Geological Survey(United States Geological Survey); Coastal/Marine Hazards and Resources Program of the U.S. Geological Survey	This work was supported by the Tampa Bay Environmental Restoration Fund, the Florida Fish and Wildlife Conservation Commission, and the United States Geological Survey. We are grateful to Matt Garrett, Jamie Williams, Cathryn Wheaton, and B.J. Reynolds for their assistance with sediment core collection. We also thank Karen Henschen, Laura Markley, and Stephanie Keller-Abbe for phytoplankton enumeration and Amber Bratcher-Covino, Elsie McBride, Shelby Stoneburner, and Cheyenne Everhart for help with laboratory analyses. Discussions with Karen Steidinger, David Karlen, Siobhan Gorham, and Alexis Fischer were helpful throughout this study. We also thank Katherine Hubbard, Sugandha Shankar, Charles Tilney, and two anonymous reviewers for their thoughtful reviews that helped to improve this manuscript. CGS and MEM would like to thank the Coastal/Marine Hazards and Resources Program (formerly Coastal and Marine Geology Program) of the U.S. Geological Survey for continued support. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.	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Phycol.	AUG	2019	55	4					924	935		10.1111/jpy.12883	http://dx.doi.org/10.1111/jpy.12883		JUL 2019	12	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	IR5VN	31066460				2025-03-11	WOS:000475115400001
J	Wainman, CC; Mantle, DJ; Hannaford, C; McCabe, PJ				Wainman, Carmine C.; Mantle, Daniel J.; Hannaford, Carey; McCabe, Peter J.			Possible freshwater dinoflagellate cysts and colonial algae from the Upper Jurassic strata of the Surat Basin, Australia	PALYNOLOGY			English	Article						freshwater dinoflagellate cysts; Moorodinium crispa; Skuadinium fusum; Palambages pariunta; estuarine; Surat Basin; Upper Jurassic	HUMMOCKY CROSS-STRATIFICATION; BOXVALE SANDSTONE MEMBER	Jurassic sedimentary successions in eastern Australia are widely thought to have been deposited in nonmarine environments. Thus, the discovery of low-diversity dinoflagellate cyst assemblages with associated colonial algae in the Walloon Coal Measures of the western Surat Basin provides new evidence of either a short-lived marine transgression or the very rare occurrence of nonmarine dinoflagellate cysts in pre-Cretaceous strata. Their small size, thin walls and simple proximate shapes are typical of freshwater to brackish dinoflagellate cysts, as are the low species richness and high dominance nature of the assemblages. Two new species of dinoflagellate cysts (Moorodinium crispa sp. nov. and Skuadinium fusum sp. nov.) and a new species of colonial algae (Palambages pariunta sp. nov.) are described from these assemblages. Tidal channel and tidal mudflat facies associated with these assemblages provide evidence of a possible upper estuarine setting. Support for a marine incursion is provided by U-Pb dating. This yielded an age of 150.11 +/- 0.04 Ma (similar to 100 m above the dinoflagellate cyst assemblage in the Indy 3 well) that ties to an episode of high eustatic sea level during the Tithonian. Thus, a marine transgressive event during the Tithonian may have allowed dinoflagellates to migrate into the interior of the Australian continent. If these dinoflagellate cysts are found more widely, rather than being just an isolated occurrence in this well, they may provide a useful correlative tool for tracing distinctive brackish to marginal marine flooding surfaces in continental successions in eastern Australia.	[Wainman, Carmine C.; McCabe, Peter J.] Univ Adelaide, Australian Sch Petr, Adelaide, SA 5005, Australia; [Mantle, Daniel J.; Hannaford, Carey] MGPalaeo Pty Ltd, 5 Arvida St, Malaga, WA 6090, Australia	University of Adelaide	Wainman, CC (通讯作者)，Univ Adelaide, Australian Sch Petr, Adelaide, SA 5005, Australia.; Mantle, DJ (通讯作者)，MGPalaeo Pty Ltd, 5 Arvida St, Malaga, WA 6090, Australia.	carmine.wainman@adelaide.edu.au; dan.mantle@mgpalaeo.com.au		Wainman, Carmine/0000-0001-6375-1520	University of Adelaide	University of Adelaide	Carmine Wainman received a PhD scholarship from the University of Adelaide that covered most of the travel and analytical costs. We thank Cory MacNeill and Senex Energy for making the Indy 3 well available for analysis. We are grateful to John Backhouse for his assistance in the taxonomic identification of dinoflagellate cysts for this study. We also thank Jim Crowley, Debra Pierce and Alexandra Edwards from Boise State University, who assisted with mineral separation, preparation and the dating of zircon grains using CA-TIMS.	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J	Strassert, JFH; Hehenberger, E; del Campo, J; Okamoto, N; Kolisko, M; Richards, TA; Worden, AZ; Santoro, AE; Keeling, PJ				Strassert, Jurgen F. H.; Hehenberger, Elisabeth; del Campo, Javier; Okamoto, Noriko; Kolisko, Martin; Richards, Thomas A.; Worden, Alexandra Z.; Santoro, Alyson E.; Keeling, Patrick J.			Phylogeny, Evidence for a Cryptic Plastid, and Distribution of <i>Chytriodinium</i> Parasites (Dinophyceae) Infecting Copepods	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						Dinoflagellates; Gymnodinium; heme pathway; plankton; protists	SINGLE-CELL GENOMICS; ALIGNMENT; DIVERSITY; PATHWAY; TOOL	Spores of the dinoflagellate Chytriodinium are known to infest copepod eggs causing their lethality. Despite the potential to control the population of such an ecologically important host, knowledge about Chytriodinium parasites is limited: we know little about phylogeny, parasitism, abundance, or geographical distribution. We carried out genome sequence surveys on four manually isolated sporocytes from the same sporangium, which seemed to be attached to a copepod nauplius, to analyze the phylogenetic position of Chytriodinium based on SSU and concatenated SSU/LSU rRNA gene sequences, and also characterize two genes related to the plastidial heme pathway, hemL and hemY. The results suggest the presence of a cryptic plastid in Chytriodinium and a photosynthetic ancestral state of the parasitic Chytriodinium/Dissodinium clade. Finally, by mapping Tara Oceans V9 SSU amplicon data to the recovered SSU rRNA gene sequences from the sporocytes, we show that globally, Chytriodinium parasites are most abundant within the pico/nano- and mesoplankton of the surface ocean and almost absent within microplankton, a distribution indicating that they generally exist either as free-living spores or host-associated sporangia.	[Strassert, Jurgen F. H.; Hehenberger, Elisabeth; del Campo, Javier; Okamoto, Noriko; Kolisko, Martin; Keeling, Patrick J.] Univ British Columbia, Dept Bot, 3529-6270 Univ Blvd, Vancouver, BC V6T 1Z4, Canada; [Richards, Thomas A.] Univ Exeter, Biosci, Geoffrey Pope Bldg,Stocker Rd, Exeter EX 44QD, Devon, England; [Hehenberger, Elisabeth; Worden, Alexandra Z.] Monterey Bay Aquarium Res Inst, 7700 Sandholdt Rd, Moss Landing, CA 95039 USA; [Santoro, Alyson E.] Univ Calif Santa Barbara, Dept Ecol Evolut & Marine Biol, Santa Barbara, CA 93106 USA; [Strassert, Jurgen F. H.] Uppsala Univ, Dept Organismal Biol, Norbyvagen 18D, S-75236 Uppsala, Sweden; [del Campo, Javier] CSIC, Inst Ciencies Mar, Dept Biol Marina & Oceanog, Passeig Maritim Barceloneta 37-49, E-08003 Barcelona, Spain; [Kolisko, Martin] Czech Acad Sci, Biol Ctr, Inst Parasitol, Ceske Budejovice 37005, Czech Republic	University of British Columbia; University of Exeter; Monterey Bay Aquarium Research Institute; University of California System; University of California Santa Barbara; Uppsala University; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Centro Mediterraneo de Investigaciones Marinas y Ambientales (CMIMA); CSIC - Instituto de Ciencias del Mar (ICM); Czech Academy of Sciences; Biology Centre of the Czech Academy of Sciences	Strassert, JFH (通讯作者)，Uppsala Univ, Dept Organismal Biol, Norbyvagen 18D, S-75236 Uppsala, Sweden.	strassert@protist.eu	Hehenberger, Elisabeth/AAG-3123-2021; Worden, Alexandra/AAD-6567-2019; Okamoto, Noriko/J-6570-2012; Richards, Toby/K-6547-2013; Kolisko, Martin/N-2831-2017; Santoro, Alyson/E-5686-2013; del Campo, Javier/B-5233-2008	Kolisko, Martin/0000-0003-0600-1867; Richards, Thomas/0000-0002-9692-0973; Santoro, Alyson/0000-0003-2503-8219; Worden, Alexandra/0000-0002-9888-9324; Hehenberger, Elisabeth/0000-0001-7810-1336; Okamoto, Noriko/0000-0001-5493-8051; del Campo, Javier/0000-0002-5292-1421	Gordon and Betty Moore Foundation [GBMF3307]; NSERC [RGPIN-2014-03994]; David and Lucile Packard Foundation through MBARI; Marie Curie International Outgoing Fellowship grant [FP7-PEOPLE-2012-IOF - 331450 CAARL]; Tula Foundation;  [GBMF3788]; NERC [NE/S013415/1] Funding Source: UKRI	Gordon and Betty Moore Foundation(Gordon and Betty Moore Foundation); NSERC(Natural Sciences and Engineering Research Council of Canada (NSERC)); David and Lucile Packard Foundation through MBARI(The David & Lucile Packard Foundation); Marie Curie International Outgoing Fellowship grant(European Union (EU)); Tula Foundation; ; NERC(UK Research & Innovation (UKRI)Natural Environment Research Council (NERC))	We thank the captain and crew of the R/V Western Flyer, M. Blum, F. Chavez, V. Jimenez, J. T. Pennington, J. M. Smith, S. Sudek, J. Swalwell, C. Wahl, and S. Wilken, for logistical assistance prior to and during the cruises. We thank T. Glatzel and H.-D. Franke for identifying the host animal. This work was supported by a grant from the Gordon and Betty Moore Foundation (GBMF3307) to P.J.K., T.A.R., A.Z.W., and A.E.S., and from NSERC (RGPIN-2014-03994) to P.J.K. Ship time was supported by a grant from the David and Lucile Packard Foundation through MBARI and GBMF3788 to A.Z.W. J.dC. was supported by a Marie Curie International Outgoing Fellowship grant (FP7-PEOPLE-2012-IOF - 331450 CAARL), and N.O., M.K., and J.dC. were supported by a grant from the Tula Foundation to the Centre for Microbial Biodiversity and Evolution at UBC.	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R., 2007, ECOLOGICAL GEOGRAPHY, P35; Moriya Y, 2007, NUCLEIC ACIDS RES, V35, pW182, DOI 10.1093/nar/gkm321; Poux S, 2017, BIOINFORMATICS, V33, P3454, DOI 10.1093/bioinformatics/btx439; Price MN, 2009, MOL BIOL EVOL, V26, P1641, DOI 10.1093/molbev/msp077; Quast Christian, 2013, Nucleic Acids Res, V41, pD590, DOI 10.1093/nar/gks1219; Skovgaard A, 2014, ACTA PROTOZOOL, V53, P51, DOI 10.4467/16890027AP.14.006.1443; Stamatakis A, 2014, BIOINFORMATICS, V30, P1312, DOI 10.1093/bioinformatics/btu033; Steinberg DK, 2008, LIMNOL OCEANOGR, V53, P1327, DOI 10.4319/lo.2008.53.4.1327; Stirling C, 2010, BMC HEALTH SERV RES, V10, DOI 10.1186/1472-6963-10-122; Strassert JFH, 2018, ISME J, V12, P304, DOI 10.1038/ismej.2017.167; Zhang JJ, 2014, BIOINFORMATICS, V30, P614, DOI 10.1093/bioinformatics/btt593	34	1	1	1	16	WILEY	HOBOKEN	111 RIVER ST, HOBOKEN 07030-5774, NJ USA	1066-5234	1550-7408		J EUKARYOT MICROBIOL	J. Eukaryot. Microbiol.	JUL	2019	66	4					574	581		10.1111/jeu.12701	http://dx.doi.org/10.1111/jeu.12701			8	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	IH6WJ	30444565				2025-03-11	WOS:000474643200005
J	Lim, YK; Baek, SH; Lee, M; Kim, YO; Choi, KH; Kim, JH				Lim, Young Kyun; Baek, Seung Ho; Lee, Minji; Kim, Young Ok; Choi, Keun-Hyung; Kim, Jin Ho			Phytoplankton composition associated with physical and chemical variables during summer in the southern sea of Korea: Implication of the succession of the two toxic dinoflagellates <i>Cochlodinium</i> (a.k.a. <i>Margalefidinium</i>) <i>polykrikoides</i> and <i>Alexandrium affine</i>	JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY			English	Article						Succession; Competition; HABs; Cochlodinium polykrikoides; Alexandrium affine; Coastal environment	HARMFUL ALGAL BLOOMS; NUTRIENT LIMITATION; COMMUNITY STRUCTURE; LIGHT-INTENSITY; RESTING CYSTS; NEW-YORK; COASTAL; GROWTH; DINOPHYCEAE; TEMPERATURE	Harmful algal blooms (HABs) of the dinoflagellates Cochlodinium and Alexandrium are known to have serious negative impacts on marine ecosystems and the aquaculture industry. We investigated the appearance and succession patterns of both HAB species in the southern sea of Korea and performed a bioassay using C.polykrikoides and A.affine cultures to evaluate their competitive relationship. From June to August in 2017, the surface water temperature increased from 17.4 degrees C to 26.8 degrees C, the salinity decreased from 34.2 to 30.8, and strong stratification developed. The nutrient concentrations remained low in the surface layer and high in the bottom layers. C.polykrikoides dominated in July; however, A.affine reached bloom levels throughout the study area in August. The growth experiments were carried out on each species at six water temperature (15, 20, 22.5, 25, 27.5 and 30 degrees C) and six salinity (20, 24, 26, 28, 30 and 32) levels. The maximum growth rate for C. polykrikoides (0.31 day(-1)) was measured at 25 degrees C and a salinity of 32, and for A. affine (0.43 day(-1)) at 25 degrees C and a salinity of 30. At all salinity levels, C. polykrikoides cells died within 2 days when temperature were 30 degrees C, while A.affine maintained high growth rates (0.35-0.39 day(-1)). Further, C. polykrikoides is salinity sensitive at the lowest salinity level of 20 in 25 degrees C and 27 degrees C, but A. affine did not respond sensitively to changes in salinity. In contrast, A. affine did not grow at low temperature of 15 degrees C, but C. polykrikoides could survive in high salinity range (26-32). In co-cultivation at a 1:1 cell inoculation ratio, A.affine had a competitive advantage over C. polykrikoides at all temperatures; however, when the inoculation ratios were varied, the species with a higher initial cell density showed a competitive advantage at all temperatures except 30 degrees C. Combined the field and bioassay results indicated that A. affine may have an advantage over C. polykrikoides under relatively higher temperature and low salinity conditions, which is important when evaluating the species succession and blooms in the southern sea of Korea during summer.	[Lim, Young Kyun; Baek, Seung Ho; Lee, Minji; Kim, Jin Ho] KIOST, Risk Assessment Res Ctr, Geoje 53201, South Korea; [Lim, Young Kyun; Choi, Keun-Hyung] Chungnam Natl Univ, Coll Nat Sci, Dept Oceanog & Ocean Environm Sci, Daejeon 34134, South Korea; [Kim, Young Ok] KIOST, Marine Environm & Climate Res Div, Busan 49111, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Chungnam National University; Korea Institute of Ocean Science & Technology (KIOST)	Baek, SH; Kim, JH (通讯作者)，KIOST, Risk Assessment Res Ctr, Geoje 53201, South Korea.	baeksh@kiost.ac.kr; diatomist.jin@gmail.com	Kim, Se Young/GSE-5296-2022	, Jin Ho/0000-0001-7657-5351; Lee, Minji/0000-0001-6834-6874	Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning [NRF-2016M1A5A1027456]; Ministry of Ocean and Fisheries [PM60650]	Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) - Ministry of Science, ICT & Future Planning; Ministry of Ocean and Fisheries	This work was supported by the Basic Core Technology Development Program for the Oceans and the Polar Regions of the National Research Foundation (NRF) funded by the Ministry of Science, ICT & Future Planning [grant number NRF-2016M1A5A1027456]; and a projects of Ministry of Ocean and Fisheries [grant number PM60650].	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Exp. Mar. Biol. Ecol.	JUL	2019	516						51	66		10.1016/j.jembe.2019.05.006	http://dx.doi.org/10.1016/j.jembe.2019.05.006			16	Ecology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	IE9JR					2025-03-11	WOS:000472691200006
J	Kremp, A; Hansen, PJ; Tillmann, U; Savela, H; Suikkanen, S; Voss, D; Barrera, F; Jakobsen, HH; Krock, B				Kremp, Anke; Hansen, Per Juel; Tillmann, Urban; Savela, Henna; Suikkanen, Sanna; Voss, Daniela; Barrera, Facundo; Jakobsen, Hans Henrik; Krock, Bernd			Distributions of three <i>Alexandrium</i> species and their toxins across a salinity gradient suggest an increasing impact of GDA producing <i>A.</i> <i>pseudogonyaulax</i> in shallow brackish waters of Northern Europe	HARMFUL ALGAE			English	Article						Alexandrium; A. pseudogonyaulax; Northern Europe; Climate warming; Toxins; Goniodomin A; Cycloimines; Paralytic shellfish toxins; Resting cysts; Baltic Sea	OSTENFELDII DINOPHYCEAE; MARINE DINOFLAGELLATE; GENUS ALEXANDRIUM; RESTING CYSTS; LIFE-HISTORY; TAMARENSE DINOPHYCEAE; MEDITERRANEAN COAST; SEASONAL DYNAMICS; BIZERTE LAGOON; GONIODOMIN-A	Blooms of Alexandrium spp. are a well-known phenomenon in Northern European waters. While A. tamarense/catenella, and A. pseudogonyoular have been reported from marine waters, high densities of A. ostenfeldii are mainly observed at lower salinities in North Sea estuaries and the Baltic Sea, suggesting salinity as a driver of Alexandriwn species composition and toxin distribution. To investigate this relationship, an oceanographic expedition through a natural salinity gradient was conducted in June 2016 along the coasts of Denmark. Besides hydrographic data, phytoplankton and sediment samples were collected for analyses of Alexandrium spp. cell and cyst abundances, for toxin measurement and cell isolation. Plankton data revealed the predominance of A. pseudogonyaulax at all transect stations while A. ostenfeldii and A. catenella generally contributed a minor fraction to the Alexandriwn community. High abundances of A. pseudogonyaulax in the shallow enclosed Limfjord were accompanied by high amounts of goniodomin A (GDA). This toxin was also detected at low abundances along with A. pseudogonyaulax in the North Sea and the Kattegat. Genetic and morphological characterization of established strains showed high similarity of the Northern European population to distant geographic populations. Despite low cell abundances of A. ostenfeldii, different profiles of cycloimines were measured in the North Sea and in the Limfjord. This field survey revealed that salinity alone does not determine Alexandrium species and toxin distribution, but emphasizes the importance of habitat conditions such as proximity to seed banks, shelter, and high nutrient concentrations. The results show that A. pseudogonyaulax has become a prominent member of the Alexandrium spp. community over the past decade in the study area. Analyses of long term monitoring data from the Limfjord confirmed a recent shift to A. pseudogonyaulax dominance. Cyst and toxin records of the species in Kiel Bight suggest a spreading potential into the brackish Baltic Sea, which might lead to an expansion of blooms under future climate conditions.	[Kremp, Anke] Leibniz Inst Ostseeforsch Warnemunde, Seestr 15, D-18119 Rostock, Germany; [Kremp, Anke; Savela, Henna; Suikkanen, Sanna] Finnish Environm Inst, Marine Res Ctr, Agnes Sjobergin Katu 2, Helsinki 00790, Finland; [Hansen, Per Juel] Univ Copenhagen, Marine Biol Sect, Strandpromenaden 5, DK-3000 Helsingor, Denmark; [Tillmann, Urban; Krock, Bernd] Alfred Wegener Inst Helmholtz Zentrum Polar & Mee, Handelshafen 12, D-27570 Bremerhaven, Germany; [Savela, Henna] Univ Turku, Dept Biochem Biotechnol, Kunamyllynkatu 10, FIN-20520 Turku, Finland; [Voss, Daniela] ICBM, Schleusenstr 1, D-26382 Wilhelmshaven, Germany; [Barrera, Facundo] Univ Catolica Santisima Concepcion, Ctr Invest Biodiversidad & Ambientes Sustentables, Fac Ciencias, Dept Quim Ambiental, Alonso de Ribero 2850, Concepcion 4090541, Chile; [Jakobsen, Hans Henrik] Aarhus Univ, Inst Biosci, Frederiksborgvej 399, DK-4000 Roskilde, Denmark; [Kremp, Anke] Leibniz Inst Ostseeforsch Wamemunde, Seestr 15, D-18119 Rostock, Germany	Leibniz Institut fur Ostseeforschung Warnemunde; Finnish Environment Institute; University of Copenhagen; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; University of Turku; Universidad Catolica de la Santisima Concepcion; Aarhus University	Kremp, A (通讯作者)，Leibniz Inst Ostseeforsch Warnemunde, Seestr 15, D-18119 Rostock, Germany.; Kremp, A (通讯作者)，Finnish Environm Inst, Marine Res Ctr, Agnes Sjobergin Katu 2, Helsinki 00790, Finland.; Kremp, A (通讯作者)，Leibniz Inst Ostseeforsch Wamemunde, Seestr 15, D-18119 Rostock, Germany.	anke.kremp@io-warnemuende.de	Krock, Bernd/ABB-7541-2020; Jakobsen, Hans/I-7200-2013; Hansen, Per Juel/E-9969-2011	Savela, Henna/0000-0002-2058-2779; Suikkanen, Sanna/0000-0002-0768-8149; Jakobsen, Hans/0000-0001-9590-2362; Hansen, Per Juel/0000-0003-0228-9621	Academy of Finland [310449]; Helmholtz-Gemeinschaft Deutscher Forschungszentren through the research program PACES of the Alfred-Wegener-Institut, Helmholtz Zentrum fur Polar-and Meeresforschung; European Commission [319718]; Innovation Fund Denmark, through the HABFISH project [0603-00449B]; Academy of Finland (AKA) [310449] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Helmholtz-Gemeinschaft Deutscher Forschungszentren through the research program PACES of the Alfred-Wegener-Institut, Helmholtz Zentrum fur Polar-and Meeresforschung; European Commission(European Union (EU)European Commission Joint Research Centre); Innovation Fund Denmark, through the HABFISH project; Academy of Finland (AKA)(Research Council of Finland)	This work was partially financed by the Academy of Finland (Decision No. 310449), the Helmholtz-Gemeinschaft Deutscher Forschungszentren through the research program PACES of the Alfred-Wegener-Institut, Helmholtz Zentrum fur Polar-and Meeresforschung, the European Commission under the 7th Framework Programme through the Action-IMCONet (FP7 IRSES, Action No. 319718) and the Innovation Fund Denmark, through the HABFISH project (Project No. 0603-00449B).	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J	Pandeirada, MS; Craveiro, SC; Daugbjerg, N; Moestrup, O; Domingues, P; Calado, AJ				Pandeirada, Mariana S.; Craveiro, Sandra C.; Daugbjerg, Niels; Moestrup, Ojvind; Domingues, Pedro; Calado, Antonio J.			Studies on Woloszynskioid Dinoflagellates X: Ultrastructure, Phylogeny and Colour Variation in <i>Tovellia rubescens</i> n. sp. (Dinophyceae)	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						Astaxanthin; central pyrenoid complex; flagellar apparatus; ITS1-5; 8S-ITS2 rDNA; LSU rDNA; Tovelliaceae	FRESH-WATER DINOFLAGELLATE; SP-NOV DINOPHYCEAE; FINE-STRUCTURAL CHARACTERIZATION; RDNA-BASED PHYLOGENY; FLAGELLAR APPARATUS; ASTAXANTHIN ACCUMULATION; CHLORELLA-ZOFINGIENSIS; ELECTRON-MICROSCOPY; LIGHT; GEN.	The external morphology and internal cell fine structure of a new species of Tovelliaceae, Tovellia rubescens n. sp., is described. Phylogenetic analyses based on partial LSU rDNA sequences place the new species in a clade containing Tovellia species that accumulate red pigments and identify T. aveirensis as its closest known relative. Cells of T. rubescens n. sp. were mostly round and had the cingulum located near the middle, with its ends displaced about one cingular width. Small numbers of distinctly flat cells appeared in culture batches; their significance could not be determined. Cells of the new species in culture batches progressively changed from a yellowish-green, mainly due to chloroplast colour, to a reddish-brown colour that appeared associated with lipid bodies. The switch to a reddish colour happened earlier in batches grown in medium lacking sources of N or P. Pigment analyses by HPLC-MS/MS revealed the presence of astaxanthin and astaxanthin-related metabolites in the new species, but also in T. aveirensis, in which a reddish colour was never observed. The chloroplast arrangement of T. rubescens n. sp. resembled that of T. aveirensis, with lobes radiating from a central pyrenoid complex. The flagellar apparatus and pusular system fell within the general features described from other Tovelliaceae. A row of microtubules interpretable as a microtubular strand of the peduncle was present. Spiny resting cysts with red contents and an ITS sequence identical to that of cultured material of the new species were found in the original locality.	[Pandeirada, Mariana S.; Craveiro, Sandra C.; Calado, Antonio J.] Univ Aveiro, Dept Biol, P-3810193 Aveiro, Portugal; [Pandeirada, Mariana S.; Craveiro, Sandra C.; Calado, Antonio J.] Univ Aveiro, GeoBioTec Res Unit, P-3810193 Aveiro, Portugal; [Daugbjerg, Niels; Moestrup, Ojvind] Univ Copenhagen, Dept Biol, Marine Biol Sect, Univ Pk 4, DK-2100 Copenhagen O, Denmark; [Domingues, Pedro] Univ Aveiro, Dept Chem, Mass Spectrometry Ctr, P-3810193 Aveiro, Portugal; [Domingues, Pedro] Univ Aveiro, QOPNA, P-3810193 Aveiro, Portugal	Universidade de Aveiro; Universidade de Aveiro; University of Copenhagen; Universidade de Aveiro; Universidade de Aveiro	Calado, AJ (通讯作者)，Univ Aveiro, Dept Biol, P-3810193 Aveiro, Portugal.	acalado@ua.pt	Pandeirada, Mariana/AAF-7448-2019; Calado, Antonio Jose/D-6263-2015; Daugbjerg, Niels/D-3521-2014; Calado, Sandra Carla/A-6791-2016; Pandeirada, Mariana Sofia/E-8803-2015; Domingues, Pedro/E-5202-2010	Calado, Antonio Jose/0000-0002-9711-0593; Daugbjerg, Niels/0000-0002-0397-3073; Calado, Sandra Carla/0000-0002-2738-7626; Pandeirada, Mariana Sofia/0000-0001-5061-9029; Domingues, Pedro/0000-0002-8060-7675	POCH - Programa Operacional Capital Humano [SFRH/BD/109016/2015]; QREN - POPH - Tipologia 4.1 - Formacao Avancada [SFRH/BPD/68537/2010]; European Social Funding (FSE); Portuguese Ministry of Education and Science (MEC); GeoBioTec [UID/GEO/04035/2013]; QOPNA [FCT UID/QUI/00062/2019]; Portuguese Mass Spectrometry Network [LISBOA-01-0145-FEDER-402-022125]; FEDER; Compete 2020; Fundação para a Ciência e a Tecnologia [SFRH/BPD/68537/2010, SFRH/BD/109016/2015] Funding Source: FCT	POCH - Programa Operacional Capital Humano; QREN - POPH - Tipologia 4.1 - Formacao Avancada; European Social Funding (FSE)(European Social Fund (ESF)); Portuguese Ministry of Education and Science (MEC)(Fundacao para a Ciencia e a Tecnologia (FCT)); GeoBioTec; QOPNA; Portuguese Mass Spectrometry Network; FEDER(European Union (EU)Spanish Government); Compete 2020; Fundação para a Ciência e a Tecnologia(Fundacao para a Ciencia e a Tecnologia (FCT))	MSP and SCC were supported respectively by grants SFRH/BD/109016/2015 and SFRH/BPD/68537/2010 from the financing programs POCH - Programa Operacional Capital Humano and QREN - POPH - Tipologia 4.1 - Formacao Avancada, and by the European Social Funding (FSE) and the Portuguese Ministry of Education and Science (MEC). GeoBioTec (UID/GEO/04035/2013) supported this project. The molecular work was done in the facilities at the Laboratory of Molecular Studies for Marine Environments (LEMAM), Univ. Aveiro, Portugal. Thanks are due for the financial support to QOPNA (FCT UID/QUI/00062/2019) and Portuguese Mass Spectrometry Network (LISBOA-01-0145-FEDER-402-022125) to FCT/MCTES through national funds (PIDDAC), and the co-funding by the FEDER, within the PT2020 Partnership Agreement and Compete 2020.	BAR E, 1995, J PLANT PHYSIOL, V146, P527, DOI 10.1016/S0176-1617(11)82019-5; Calado AJ, 2006, J PHYCOL, V42, P434, DOI 10.1111/j.1529-8817.2006.00195.x; Calado AJ, 1999, EUR J PHYCOL, V34, P179, DOI 10.1080/09670269910001736232; Calado AJ, 1998, J PHYCOL, V34, P536, DOI 10.1046/j.1529-8817.1998.340536.x; Calado AJ, 2011, PHYCOLOGIA, V50, P641, DOI 10.2216/11-21.1; CAVALIERSMITH T, 1991, SYST ASSOC SPEC VOL, V45, P113; CHRISTEN H. 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Eukaryot. Microbiol.	NOV	2019	66	6					937	953		10.1111/jeu.12745	http://dx.doi.org/10.1111/jeu.12745		JUN 2019	17	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	JK9RF	31188511				2025-03-11	WOS:000474132600001
J	Gao, YD; Sassenhagen, I; Richlen, ML; Anderson, DM; Martin, JL; Erdner, DL				Gao, Yida; Sassenhagen, Ingrid; Richlen, Mindy L.; Anderson, Donald M.; Martin, Jennifer L.; Erdner, Deana L.			Spatiotemporal genetic structure of regional-scale <i>Alexandrium catenella</i> dinoflagellate blooms explained by extensive dispersal and environmental selection	HARMFUL ALGAE			English	Article						Alexandrium; Harmful algal blooms; Population structure; Dispersal; Environmental selection	HARMFUL ALGAL BLOOMS; GEORGES BANK; SPRING BLOOM; POPULATION; GULF; DIVERSITY; MAINE; CONNECTIVITY; VARIABILITY; TAMARENSE	Paralytic Shellfish Poisoning (PSP) caused by the dinoflagellate Alexandrium catenella is a well-known global syndrome that negatively impacts human health and fishery economies. Understanding the population dynamics and ecology of this species is thus important for identifying determinants of blooms and associated PSP toxicity. Given reports of extensive genetic heterogeneity in the toxicity and physiology of Alexandrium species, knowledge of genetic population structure in harmful algal species such as A. catenella can also facilitate the understanding of toxic bloom development and ecological adaptation. In this study we employed microsatellite markers to analyze multiple A. catenella strains isolated from several sub-regions in the Gulf of Maine (GoM) during summer blooms, to gain insights into the sources and dynamics of this economically important phytoplankton species. At least three genetically distinct clusters of A. catenella were identified in the GoM. Each cluster contained representatives from different sub-regions, highlighting the extent of connectivity and dispersal throughout the region. This shared diversity could result from cyst beds created by previous coastal blooms, thereby preserving the overall diversity of the regional A. catenella population. Rapid spatiotemporal genetic differentiation of A. catenella populations was observed in local blooms, likely driven by natural selection through environmental conditions such as silicate and nitrate/nitrite concentrations, emphasizing the role of short-term water mass intrusions and biotic processes in determining the diversity and dynamics of marine phytoplankton populations. Given the wide-spread intraspecific diversity of A. catenella in GoM and potentially elsewhere, harmful algal blooms will likely persist in many regions despite global warming and changing environmental conditions in the future. Selection of different genetic lineages through variable hydrological conditions might impact toxin production and profiles of future blooms, challenging HAB control and prediction of PSP risk in the future.	[Gao, Yida; Sassenhagen, Ingrid; Erdner, Deana L.] Univ Texas Austin, Inst Marine Sci, Port Aransas, TX 78373 USA; [Richlen, Mindy L.; Anderson, Donald M.] Woods Hole Oceanog Inst, Woods Hole, MA 02543 USA; [Martin, Jennifer L.] Fisheries & Oceans Canada, Biol Stn, St Andrews, NB E5B 0E4, Canada; [Sassenhagen, Ingrid] Univ Littoral Cote dOpale, UMR Log 8187, Lab Oceanol & Geosci, Wimereux, France	University of Texas System; University of Texas Austin; Woods Hole Oceanographic Institution; Fisheries & Oceans Canada; Universite du Littoral-Cote-d'Opale; Centre National de la Recherche Scientifique (CNRS); CNRS - National Institute for Earth Sciences & Astronomy (INSU)	Erdner, DL (通讯作者)，Univ Texas Austin, Inst Marine Sci, Port Aransas, TX 78373 USA.	derdner@utexas.edu	Martin, Jennifer/G-5217-2011; Erdner, Deana/C-4981-2008	Erdner, Deana/0000-0002-1736-8835; Sassenhagen, Ingrid/0000-0002-5969-2289; Gao, Yida/0000-0002-7409-9213	National Science Foundation [OCE-0850421, OCE-0911031, OCE-1314642, OCE1840381, OCE-0430724]; National Institutes of Health through the Woods Hole Center for Oceans and Human Health [1P50-ES021923-01, 1P50-ES012742-01, 1P01-ES028938-01]; NOAA Grant [NA06NOS4780245, NA11NOS4780061, NA15NOS4780181]	National Science Foundation(National Science Foundation (NSF)); National Institutes of Health through the Woods Hole Center for Oceans and Human Health; NOAA Grant(National Oceanic Atmospheric Admin (NOAA) - USA)	We thank David Townsend for collection and provision of environmental data of sampling stations, and Bruce Keafer, Kerry Norton and Dave Kulis for their hard work in obtaining the samples used in this study. We also gratefully acknowledge the work of captains and crews of the R/V Endeavor. This study was supported by National Science Foundation [grant numbers OCE-0430724, OCE-0850421, OCE-0911031, OCE-1314642, OCE1840381] and National Institutes of Health [grant numbers 1P50-ES012742-01, 1P50-ES021923-01, and 1P01-ES028938-01] through the Woods Hole Center for Oceans and Human Health. Funding was also provided by NOAA Grant [NA06NOS4780245, NA11NOS4780061 and NA15NOS4780181]. This is contribution ECO938 from the US ECOHAB program. 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M., 2007, ENVIRON HEALTH-GLOB, V108, P133; WRIGHT S, 1951, ANN EUGENIC, V15, P323; Yeh F.C., 1997, U ALTA CAN, V10, P295	53	14	17	1	25	ELSEVIER	AMSTERDAM	RADARWEG 29, 1043 NX AMSTERDAM, NETHERLANDS	1568-9883	1878-1470		HARMFUL ALGAE	Harmful Algae	JUN	2019	86						46	54		10.1016/j.hal.2019.03.013	http://dx.doi.org/10.1016/j.hal.2019.03.013			9	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	IW3IR	31358276	Green Accepted, Bronze			2025-03-11	WOS:000484874200005
J	Hinners, J; Hense, I; Kremp, A				Hinners, Jana; Hense, Inga; Kremp, Anke			Modelling phytoplankton adaptation to global warming based on resurrection experiments	ECOLOGICAL MODELLING			English	Article						Ecosystem model; Evolution; Global warming; Life cycle; Living sediment archives; Phytoplankton	DINOFLAGELLATE SCRIPPSIELLA-HANGOEI; BALTIC SEA EUTROPHICATION; SURFACE-TEMPERATURE; RESTING CYSTS; LIFE-CYCLE; GERMINATION; GROWTH; COMMUNITIES; MECHANISMS; EVOLUTION	Due to its crucial role in the ecosystem, phytoplankton is incorporated in marine ecosystem models. Most models however neglect the evolutionary potential of phytoplankton. Previous resurrection experiments with a spring bloom dinoflagellate suggest that the past century of global warming has caused an adaptive response in an important life cycle trait, the encystment rate. Here, based on this resurrection case study, we apply an advanced ecosystem model including selection and mutation, to test whether a temperature increase could induce a change in encystment. In line with the findings from resurrection experiments, our results show that in warmer waters strains with a lower encystment rate benefit over those with a higher encystment rate. The magnitude of change in encystment rate is however only reproduced, if additional factors, like eutrophication and a cyst mortality that increases with temperature, are considered. By using this ecosystem model including selection and mutation, we demonstrate that ecosystem modeling represents a powerful approach to investigate the adaptive potential of phytoplankton.	[Hinners, Jana; Hense, Inga] Univ Hamburg, Inst Marine Ecosyst & Fishery Sci, Ctr Earth Syst Res & Sustainabil, Grosse Elbstr 133, D-22767 Hamburg, Germany; [Kremp, Anke] Finnish Environm Inst SYKE, Marine Res Ctr, Agnes Sjobergin Katu 2, FI-00790 Helsinki, Finland; [Kremp, Anke] Leibniz Inst Balt Sea Res Warnemunde IOW, Dept Biol Oceanog, Seestr 15, D-18119 Rostock, Germany	University of Hamburg; Finnish Environment Institute; Leibniz Institut fur Ostseeforschung Warnemunde	Hinners, J (通讯作者)，Univ Edinburgh, Inst Evolutionary Biol, Ashworth Labs, West Mains Rd, Edinburgh EH9 3JF, Midlothian, Scotland.	jana.hinners@ed.ac.uk		Hense, Inga/0000-0001-7322-680X; Hinners, Jana/0000-0002-5145-2539	Academy of Finland [310449]; Cluster of Excellence 'CliSAP', University of Hamburg - German Science Foundation (DFG) [EXC177]; German Science Foundation (DFG); Academy of Finland (AKA) [310449] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Cluster of Excellence 'CliSAP', University of Hamburg - German Science Foundation (DFG)(German Research Foundation (DFG)); German Science Foundation (DFG)(German Research Foundation (DFG)); Academy of Finland (AKA)(Research Council of Finland)	The authors thank Eduardo Zorita for providing highly resolved climate data for the study region. Funding for A. Kremp was provided by the Academy of Finland grant 310449. I. Hense was supported through the Cluster of Excellence 'CliSAP' (EXC177), University of Hamburg, funded through the German Science Foundation (DFG).	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Model.	MAY 24	2019	400						27	33		10.1016/j.ecolmodel.2019.03.006	http://dx.doi.org/10.1016/j.ecolmodel.2019.03.006			7	Ecology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	HW3VZ					2025-03-11	WOS:000466622100003
J	Pelin, M; Kilcoyne, J; Florio, C; Hess, P; Tubaro, A; Sosa, S				Pelin, Marco; Kilcoyne, Jane; Florio, Chiara; Hess, Philipp; Tubaro, Aurelia; Sosa, Silvio			Azaspiracids Increase Mitochondrial Dehydrogenases Activity in Hepatocytes: Involvement of Potassium and Chloride Ions	MARINE DRUGS			English	Article						azaspiracids; hepatocytes; mitochondrial activity; mechanism of toxicity	OKADAIC ACID; MARINE TOXIN; COMPLEX-I; MUSSELS; TRANSPORT; ATLANTIC; CHANNELS; CELLS; MICE	Background: Azaspiracids (AZAs) are marine toxins that are produced by Azadinium and Amphidoma dinoflagellates that can contaminate edible shellfish inducing a foodborne poisoning in humans, which is characterized by gastrointestinal symptoms. Among these, AZA1, -2, and -3 are regulated in the European Union, being the most important in terms of occurrence and toxicity. In vivo studies in mice showed that, in addition to gastrointestinal effects, AZA1 induces liver alterations that are visible as a swollen organ, with the presence of hepatocellular fat droplets and vacuoles. Hence, an in vitro study was carried out to investigate the effects of AZA1, -2, and -3 on liver cells, using human non-tumor IHH hepatocytes. Results: The exposure of IHH cells to AZA1, -2, or -3 (5 x 10(-12)-1 x 10(-7) M) for 24 h did not affect the cell viability and proliferation (Sulforhodamine B assay and H-3-Thymidine incorporation assay), but they induced a significant concentration-dependent increase of mitochondrial dehydrogenases activity (MTT reduction assay). This effect depends on the activity of mitochondrial electron transport chain complex I and II, being counteracted by rotenone and tenoyl trifluoroacetone, respectively. Furthermore, AZAs-increased mitochondrial dehydrogenase activity was almost totally suppressed in the K+-, Cl--, and Na+-free media and sensitive to the specific inhibitors of K-ATP and hERG potassium channels, Na+/K+, ATPase, and cystic fibrosis transmembrane conductance regulator (CFTR) chloride channels. Conclusions: These results suggest that AZA mitochondrial effects in hepatocytes derive from an imbalance of intracellular levels of K+ and, in particular, Cl- ions, as demonstrated by the selective reduction of toxin effects by CFTR chloride channel inhibition.	[Pelin, Marco; Florio, Chiara; Tubaro, Aurelia; Sosa, Silvio] Univ Trieste, Dept Life Sci, Via A Valerio 6, I-34127 Trieste, Italy; [Kilcoyne, Jane] Oranmore Co, Marine Inst, Galway H91 R673, Ireland; [Hess, Philipp] IFREMER, Lab Phycotoxines, Rue Ile Yeu, F-44311 Nantes, France	University of Trieste; Marine Institute Ireland; Ifremer	Sosa, S (通讯作者)，Univ Trieste, Dept Life Sci, Via A Valerio 6, I-34127 Trieste, Italy.	mpelin@units.it; jane.kilcoyne@marine.ie; florioc@units.it; philipp.hess@ifremer.fr; tubaro@units.it; ssosa@units.it	Tubaro, Aurelia/AAB-2601-2022; Hess, Philipp/G-1761-2010	Pelin, Marco/0000-0002-4306-7411; SOSA, SILVIO/0000-0002-2909-6603; Kilcoyne, Jane/0000-0002-1219-7731; Hess, Philipp/0000-0002-9047-1345	University of Trieste (Universita degli Studi di Trieste-Finanziamento di Ateneo per progetti di ricerca scientifica-FRA2014); ASTOX2 project [PBA/AF/08/001-01]; Marine Institute; Marine Research Sub-Programme of the National Development Plan 2007-2013; European Regional Development Fund	University of Trieste (Universita degli Studi di Trieste-Finanziamento di Ateneo per progetti di ricerca scientifica-FRA2014); ASTOX2 project; Marine Institute; Marine Research Sub-Programme of the National Development Plan 2007-2013; European Regional Development Fund(European Union (EU))	This work was supported by a grant of the University of Trieste (Universita degli Studi di Trieste-Finanziamento di Ateneo per progetti di ricerca scientifica-FRA2014) and by the ASTOX2 project (PBA/AF/08/001-01) which was carried out under the Sea Change strategy with the support of the Marine Institute and the Marine Research Sub-Programme of the National Development Plan 2007-2013, co-financed under the European Regional Development Fund.	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Drugs	MAY	2019	17	5								10.3390/md17050276	http://dx.doi.org/10.3390/md17050276			14	Chemistry, Medicinal; Pharmacology & Pharmacy	Science Citation Index Expanded (SCI-EXPANDED)	Pharmacology & Pharmacy	IC4VH	31072021	Green Published, gold			2025-03-11	WOS:000470964600029
J	Deng, YY; Hu, ZX; Chai, ZY; Tang, YZ				Deng, Yunyan; Hu, Zhangxi; Chai, Zhaoyang; Tang, Ying Zhong			Cloning and Partial Characterization of a Cold Shock Domain-Containing Protein Gene from the Dinoflagellate <i>Scrippsiella trochoidea</i>	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						Harmful algal blooms; resting cyst; temperature shock	HARMFUL ALGAL BLOOMS; ESCHERICHIA-COLI; RECENT SEDIMENTS; CYST FORMATION; CSPA FAMILY; HSP70 GENE; TEMPERATURE; GROWTH; SEED; CONSERVATION	CSPs, cold shock domain (CSD) containing proteins, are demonstrated to be involved in low temperature responses and various cellular processes under normal growth conditions. Here, we used the cosmopolitan, toxic, and resting cyst-producing dinoflagellate Scrippsiella trochoidea as a representative harmful algal bloom-forming dinoflagellate to investigate the expression patterns of CSP in vegetative cells in response to temperature shocks and in resting cysts, with an objective to probe the possible function of CSP in dinoflagellates. The full-length cDNA of a CSP gene from S. trochoidea (StCSP) was obtained which has a solely N-terminal CSD with conserved nucleic acids binding motifs. The qPCR results together indicated StCSP expression was not modulated by temperature at the transcriptional level and implied this gene may not be associated with temperature stress responses in S. trochoidea as the gene's name implies. However, we observed significantly higher StCSP transcripts in resting cysts (newly formed and maintained in dormancy for different periods of time) than that observed in vegetative cells (at exponential and stationary stages), indicating StCSP is actively expressed during dormancy of S. trochoidea. Taking together our recent transcriptomic work on S. trochoidea into consideration, we postulate that StCSP may play roles during encystment and cyst dormancy of the species.	[Deng, Yunyan; Hu, Zhangxi; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Shandong, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Chai, Zhaoyang/F-7485-2017	Deng, Yunyan/0000-0001-5967-3611	National Science Foundation of China [41476142, 41506143, 61533011, U1301235]; NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]	National Science Foundation of China(National Natural Science Foundation of China (NSFC)); NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences	We would like to express our gratitude to the anonymous reviewers for their constructive suggestions and comments. We acknowledge financial support from the National Science Foundation of China (Grant No. 41606126), the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences (Grant No. U1606404), and National Science Foundation of China (Grant Nos. 41476142, 41506143, 61533011, and U1301235).	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Eukaryot. Microbiol.	MAY-JUN	2019	66	3					393	403		10.1111/jeu.12681	http://dx.doi.org/10.1111/jeu.12681			11	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	HU9HA	30099808				2025-03-11	WOS:000465604100003
J	Sildever, S; Ribeiro, S; Mertens, KN; Andersen, TJ; Moros, M; Kuijpers, A				Sildever, Sirje; Ribeiro, Sofia; Mertens, Kenneth Neil; Andersen, Thorbjorn Joest; Moros, Matthias; Kuijpers, Antoon			Reconstructing salinity changes and environmental influence on dinoflagellate cysts in the central Baltic Sea since the late 19th century	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Baltic Sea; Biecheleria baltica; Dinoflagellate cysts; Environmental change; Protoceratium reticulatum; Sea-surface salinity; Sediment core records	PROCESS LENGTH VARIATION; LAST 2000 YEARS; SURFACE SEDIMENTS; PROTOCERATIUM-RETICULATUM; NORTH-ATLANTIC; BLACK-SEA; PHYTOPLANKTON COMMUNITIES; CLIMATE-CHANGE; RESTING CYST; WEST-COAST	We present a record of dinoflagellate cyst assemblage composition, abundance, and morphology from the central Baltic Sea, spanning the late 19th to the early 21st centuries. Environmental time-series were analyzed in relation to changes in community structure and diversity as inferred from the sediment record, and average summer sea surface salinity (SSS) was reconstructed based on the average process length of Protoceratium reticulatum resting cysts. The reconstructed summer SSS was compared to instrumental data for a critical evaluation of this approach. The most abundant species in this record were P. reticulatum and Biecheleria baltica, and on average ten taxa were identified per sample. The cyst record of B. baltica indicated that although this species has been present in the Gotland Basin at least since the 1880s, its concentrations have increased significantly since the 1980s, possibly linked to eutrophication. Variations in assemblage composition and P. reticulatum cyst morphology reflected patterns of major, instrumentally recorded hydrographic and environmental changes in the Baltic Sea during the past century. The variability in microfossil relative abundances was best explained by the average spring SSS as well as by the average NO3 concentrations during spring and by the combined effects of average summer SSS and NAO variability. Reconstructed summer SSS and instrumental SSS showed notable differences, depending on the year and function applied for reconstruction. Although roughly reflecting the same patterns, the reconstructed values are offset when compared to instrumental measurements. We put forward suggestions for improvement of the process-length method and recommend using the reconstructed values as an indication of relative changes in past summer sea surface salinity, preferably as part of a multiproxy approach.	[Sildever, Sirje] Tallinn Univ Technol, Dept Marine Syst, Akad Tee 15A, EE-12618 Tallinn, Estonia; [Ribeiro, Sofia; Kuijpers, Antoon] Geol Survey Denmark & Greenland, Dept Glaciol & Climate, Oster Voldgade 10, DK-1350 Copenhagen K, Denmark; [Mertens, Kenneth Neil] IFREMER, Stn Biol Marine Concantectu, ODE, UL,LER BO, Pl Croix 40, F-29900 Concarneau, France; [Andersen, Thorbjorn Joest] Univ Copenhagen, Dept Geosci & Nat Resource Management, Oster Voldgade 10, DK-1350 Copenhagen K, Denmark; [Moros, Matthias] Leibniz Inst Balt Sea Res Wanremunde, Dept Marine Geol, Seestr 15, D-18119 Rostock, Germany; [Sildever, Sirje] Natl Res Inst Fisheries Sci, Yokohama, Kanagawa 2368648, Japan	Tallinn University of Technology; Geological Survey Of Denmark & Greenland; Universite de Lorraine; Ifremer; University of Copenhagen; Japan Fisheries Research & Education Agency (FRA)	Ribeiro, S (通讯作者)，Geol Survey Denmark & Greenland, Dept Glaciol & Climate, Oster Voldgade 10, DK-1350 Copenhagen K, Denmark.	sri@geus.dk	Sildever, Sirje/G-6674-2017; Mertens, Kenneth/AAO-9566-2020; Ribeiro, Sofia/AAZ-2782-2021; Andersen, Thorbjorn Joest/N-7560-2014; Ribeiro, Sofia/G-9213-2018; Mertens, Kenneth/C-3386-2015	Andersen, Thorbjorn Joest/0000-0001-5032-9945; Ribeiro, Sofia/0000-0003-0672-9161; Mertens, Kenneth/0000-0003-2005-9483	European Commission 7th Framework Programme (FP/2007e2013) [217246]; Estonian Ministry of Education and Research [IUT 19-6]; GEOCENTER Denmark	European Commission 7th Framework Programme (FP/2007e2013); Estonian Ministry of Education and Research(Ministry of Education & Research Tartu); GEOCENTER Denmark	The sediment core material used in this study was collected within the INFLOW (The Holocene Saline Water Inflow Changes into the Baltic Sea) project, funded by the European Commission 7th Framework Programme (FP/2007e2013) under Grant agreement No. 217246. Writing of the manuscript was supported by the institutional research funding (IUT 19-6) of the Estonian Ministry of Education and Research. This study is a contribution to project SEDI-TRAPS funded by GEOCENTER Denmark.	ANDERSON DM, 1985, J EXP MAR BIOL ECOL, V86, P1, DOI 10.1016/0022-0981(85)90039-5; Andrén E, 2000, HOLOCENE, V10, P687, DOI 10.1191/09596830094944; Andrén T, 2011, CENT E EUR DEV STUD, P75, DOI 10.1007/978-3-642-17220-5_4; [Anonymous], 2006, Meereswissenschaftliche Berichte Mar. Sci. 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Coast. Shelf Sci.	APR 5	2019	219						384	394		10.1016/j.ecss.2019.02.034	http://dx.doi.org/10.1016/j.ecss.2019.02.034			11	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	HQ0QL		Green Submitted			2025-03-11	WOS:000462100000037
J	Luo, ZH; Mertens, KN; Nézan, E; Gu, L; Pospelova, V; Thoha, H; Gu, HF				Luo, Zhaohe; Mertens, Kenneth Neil; Nezan, Elizabeth; Gu, Li; Pospelova, Vera; Thoha, Hikmah; Gu, Haifeng			Morphology, ultrastructure and molecular phylogeny of cyst-producing <i>Caladoa arcachonensis</i> gen. <i>et</i> sp. nov. (Peridiniales, Dinophyceae) from France and Indonesia	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						Bysmatrum; cyst; dinoflagellate; eyespot; Peridiniales; plate overlap	FRESH-WATER DINOFLAGELLATE; RDNA-BASED PHYLOGENY; ALEXANDRIUM DINOPHYCEAE; MARINE DINOFLAGELLATE; DIATOM ENDOSYMBIONT; THECA RELATIONSHIP; THORACOSPHAERACEAE; IDENTIFICATION; CLARIFICATION; POSITIONS	The dinoflagellate order Peridiniales encompasses several well circumscribed families. However, the family level of some genera, such as Bysmatrum and Vulcanodinium, has remained elusive for many years. Four Peridinium-like strains were established from the Atlantic coast of France and North Sulawesi, Indonesia through cyst germination or isolation of single cells. The cyst-theca relationship was established on specimens from the French Atlantic. Their morphologies were examined using light, scanning and transmission electron microscopy. The cells were characterized by a much larger epitheca relative to the hypotheca, a large anterior sulcal (Sa) plate deeply intruding the epitheca and a small first anterior intercalary plate. The plate formula was identified as Po, cp, X, 4 ', 3a, 7 '', 6C, 5S, 5 ''', 2 '''', shared by Apocalathium, Chimonodinium, Fusiperidinium and Scrippsiella of the family Thoracosphaeraceae but the configuration of Sa plate and anterior intercalary plates is different. Transmission electron microscopy showed that the eyespot was located within a chloroplast comprising two rows of lipid globules and thus belongs to type A. All four strains were classified within a new genus Caladoa as C. arcachonensis gen. et sp. nov. Small subunit ribosomal DNA (SSU rDNA), partial large subunit ribosomal DNA (LSU rDNA) and internal transcribed spacer ribosomal DNA (ITS rDNA) sequences were obtained from all strains. Genetic distance based on ITS rDNA sequences between French and Indonesian strains reached 0.17, suggesting cryptic speciation in C. arcachonensis. The maximum likelihood and Bayesian inference analysis based on concatenated data from SSU and LSU rDNA sequences revealed that Caladoa is monophyletic and closest to Bysmatrum. Our results supported that Caladoa and Bysmatrum are members of the order Peridiniales but their family level remains to be determined. Our results also support that Vulcanodinium is closest to the family Peridiniaceae.	[Luo, Zhaohe; Gu, Li; Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Mertens, Kenneth Neil; Nezan, Elizabeth] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Pospelova, Vera] Univ Victoria, Sch Earth & Ocean Sci, OEASB A405,POB 1700 16 STN CSC, Victoria, BC V8W 2Y2, Canada; [Thoha, Hikmah] Indonesian Inst Sci, Res Ctr Oceanog, Jakarta 14430, Indonesia	Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources; Ifremer; University of Victoria; National Research & Innovation Agency of Indonesia (BRIN); Indonesian Institute of Sciences (LIPI)	Gu, HF (通讯作者)，Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China.; Mertens, KN (通讯作者)，IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France.	kenneth.mertens@ifremer.fr; guhaifeng@tio.org.cn	Luo, Zhaohe/ITT-7163-2023; Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015; Gu, Haifeng/ADN-4528-2022	Luo, Zhaohe/0000-0001-8662-2414; Mertens, Kenneth/0000-0003-2005-9483; Pospelova, Vera/0000-0003-4049-8133; Gu, Haifeng/0000-0002-2350-9171	National Key Research and Development Program of China [2016YFE0202100]; National Natural Science Foundation of China [41676117, 41806154]; China-ASEAN Maritime Cooperation Fund	National Key Research and Development Program of China(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); China-ASEAN Maritime Cooperation Fund	This work was supported by the National Key Research and Development Program of China (2016YFE0202100), National Natural Science Foundation of China (41676117, 41806154) and China-ASEAN Maritime Cooperation Fund.	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J. Phycol.	APR 3	2019	54	2					235	248		10.1080/09670262.2018.1558287	http://dx.doi.org/10.1080/09670262.2018.1558287			14	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	HS3TP		Green Submitted			2025-03-11	WOS:000463785700009
J	Qin, QB; Shen, J				Qin, Qubin; Shen, Jian			Physical transport processes affect the origins of harmful algal blooms in estuaries	HARMFUL ALGAE			English	Article						Harmful algal blooms; Initiation; Transport; Residence time; Estuary; Cochlodinium polykrikoides	DINOFLAGELLATE COCHLODINIUM-POLYKRIKOIDES; RED TIDE DINOFLAGELLATE; LOWER CHESAPEAKE BAY; RESIDENCE TIME; PHYTOPLANKTON BIOMASS; NEW-YORK; EUTROPHICATION; DYNAMICS; MARGALEF; GYMNODINIALES	The effects of physical transport processes on the initiation of harmful algal blooms (HABs) in estuaries were investigated through both mathematical model analysis and numerical model experiments. This study highlights the influence of the flushing effect due to physical transport processes on the location of bloom initiation, which is comparable to or even more important than local processes. The theoretical analysis suggests that the differential flushing effect at different waterbodies due to complex geometry is one of the dominant factors causing inhomogeneous distribution of algal density during HAB initiation. The ratio of residence time to volume is one of the key variables that determine the differential timing of HAB occurrence in estuary-subestuary systems with multiple interconnected waterbodies. As a result, a HAB tends to be observed first in those locations with relatively long residence time and small waterbodies, such as tributaries or areas with large eddies. Multiple unconnected originating locations can co-exist within an estuary. Two three-dimensional model experiments with realistic forcings were conducted to demonstrate the flushing effect on annual Cochlodinium polykrikoides bloom in the lower James River. The results show that while the environmental conditions that affect local processes, such as salinity and temperature, are important in determining the originating locations of HABs, the differential flushing effect is the dominant factor driving the spatial difference in the density of C. polykrikoides in this region during the bloom initiation. This explains why the occurrence of the first bloom in this region is frequently observed in the Lafayette River, a relatively small waterbody with long residence time. Because of the relatively low growth rate of C. polykrikoides and because of the high water-exchange between the mainstem and tributaries of the James River, initial cyst distribution is suggested to have a relatively small impact on originating locations of the bloom compared to flushing effect and salinity, and the HAB originating locations do not have to be in the waterbody with abundant cysts.	[Qin, Qubin; Shen, Jian] Virginia Inst Marine Sci, William & Mary, POB 1346, Gloucester Point, VA 23062 USA	William & Mary; Virginia Institute of Marine Science	Qin, QB (通讯作者)，Virginia Inst Marine Sci, William & Mary, POB 1346, Gloucester Point, VA 23062 USA.	qubin@vims.edu	Qin, Qubin/AAF-5574-2020	Qin, Qubin/0000-0002-3872-9230; Shen, Jian/0000-0002-3243-8598	Virginia Institute of Marine Science; Virginia Department of Environmental Quality	Virginia Institute of Marine Science; Virginia Department of Environmental Quality	The funding of this study was supported by the Virginia Institute of Marine Science and the Virginia Department of Environmental Quality. We appreciate comments and suggestions from Kimberly Reece, Mark Brush, Kyeong Park, and Marjorie Friedrichs. We thank Mac Sisson and Jim Hutchins for help editing the manuscript. This paper is Contribution No. 3819 of the Virginia Institute of Marine Science, William & Mary. 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J	Li, Z; Mertens, KN; Nézan, E; Chomérat, N; Bilien, G; Iwataki, M; Shin, HH				Li, Zhun; Mertens, Kenneth Neil; Nezan, Elisabeth; Chomerat, Nicolas; Bilien, Gwenael; Iwataki, Mitsunori; Shin, Hyeon Ho			Discovery of a New Clade Nested Within the Genus <i>Alexandrium</i> (Dinophyceae): Morpho-molecular Characterization of <i>Centrodinium punctatum</i> (Cleve) FJR Taylor	PROTIST			English	Article						Fusiform dinoflagellate; Centrodinium; Alexandrium; morphology; phylogeny	CYST-THECA RELATIONSHIP; SP-NOV DINOPHYCEAE; MARINE DINOFLAGELLATE; SEQUENCE DATA; PHYLOGENY; PERIDINIALES; DIVERSITY; TAXONOMY; PROPOSAL; REVISION	Investigation of phytoplankton from East China Sea of the Pacific Ocean, offshore Reunion Island of the Indian Ocean, and the French Atlantic coast revealed a species of poorly known armored fusiform dinoflagellate. To clarify this species, morphology and phylogeny based on mitochondria! and nuclear protein gene sequence (Cox1, Cob and Hsp90) concatenated with the SSU, ITS region and LSU rDNA sequences were analysed. Epifluorescence and scanning electron microscopy observations revealed that the nucleus of the specimen was elongated, sausage-shaped and located equatorially on the left lateral side of the cell, and that the plate formula is Po, 3', 1a, 6 '', 6C, 8S, 5''', 1p, 2 ''''. These morphological features indicate that the species can be assigned to Centrodinium punctatum. Interestingly, the phylogenetic analyses placed this species within the Alexandrium Glade, with Alexandrium affine being its closest relative. This indicates that genus Alexandrium is not monophyletic. The most similar morphological traits between C. punctatum and Alexandrium species were the shape of apical pore plate and the arrangement of the sulcal plates. However, since there are significant morphological differences between C. punctatum and Alexandrium species, further studies are needed to clarify the relation between the morphology and molecular phylogeny of other Centrodinium-related fusiform species. (C) 2019 Elsevier GmbH. All rights reserved.	[Li, Zhun; Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje, South Korea; [Mertens, Kenneth Neil; Nezan, Elisabeth; Chomerat, Nicolas; Bilien, Gwenael] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Iwataki, Mitsunori] Univ Tokyo, Asian Nat Environm Sci Ctr, Bunkyo Ku, Tokyo, Japan	Korea Institute of Ocean Science & Technology (KIOST); Ifremer; University of Tokyo	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje, South Korea.	shh961121@kiost.ac.kr	Mertens, Kenneth/AAO-9566-2020; LI, ZHUN/GLT-3478-2022; Mertens, Kenneth/C-3386-2015; Iwataki, Mitsunori/H-9640-2019	Chomerat, Nicolas/0000-0001-9691-6344; Mertens, Kenneth/0000-0003-2005-9483; LI, ZHUN/0000-0001-8961-9966; Iwataki, Mitsunori/0000-0002-5844-2800; Shin, Hyeon Ho/0000-0002-9711-6717	Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF) [20170431]; Korea Institute of Ocean Science and Technology (KIOST) project [PE99721]; Regional Council of Brittany; General Council of Finistere; urban community of Concarneau-Cornouaille-Agglomeration	Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF); Korea Institute of Ocean Science and Technology (KIOST) project; Regional Council of Brittany(Region Bretagne); General Council of Finistere(Region Bretagne); urban community of Concarneau-Cornouaille-Agglomeration	This work was supported by grants from the Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) (No. 20170431), and Korea Institute of Ocean Science and Technology (KIOST) project (PE99721). We thank Alina Tunin-Ley (Hydro Reunion) for sampling offshore waters on Reunion Island. The Regional Council of Brittany, the General Council of Finistere and the urban community of Concarneau-Cornouaille-Agglomeration are acknowledged for the funding of the Sigma 300 FE-SEM of the station of Marine Biology in Concarneau. Malte Elbrachter is acknowledged for taxonomic advice.	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J	Jerney, J; Suikkanen, S; Lindehoff, E; Kremp, A				Jerney, Jacqueline; Suikkanen, Sanna; Lindehoff, Elin; Kremp, Anke			Future temperature and salinity do not exert selection pressure on cyst germination of a toxic phytoplankton species	ECOLOGY AND EVOLUTION			English	Article						adaptation; Alexandrium ostenfeldii; climate change; dinoflagellates; excystment; resting stage	ALEXANDRIUM-OSTENFELDII DINOPHYCEAE; SEED-GERMINATION; RESTING CYSTS; BLOOM; EVOLUTIONARY; ADAPTATION; BANKS; POPULATIONS; DORMANCY; PLANT	Environmental conditions regulate the germination of phytoplankton resting stages. While some factors lead to synchronous germination, others stimulate germination of only a small fraction of the resting stages. This suggests that habitat filters may act on the germination level and thus affect selection of blooming strains. Benthic seed banks of the toxic dinoflagellate Alexandrium ostenfeldii from the Baltic Sea are genetically and phenotypically diverse, indicating a high potential for adaptation by selection on standing genetic variation. Here, we experimentally tested the role of climate-related salinity and temperature as selection filters during germination and subsequent establishment of A.ostenfeldii strains. A representative resting cyst population was isolated from sediment samples, and germination and reciprocal transplantation experiments were carried out, including four treatments: Average present day germination conditions and three potential future conditions: high temperature, low salinity, and high temperature in combination with low salinity. We found that the final germination success of A.ostenfeldii resting cysts was unaffected by temperature and salinity in the range tested. A high germination success of more than 80% in all treatments indicates that strains are not selected by temperature and salinity during germination, but selection becomes more important shortly after germination, in the vegetative stage of the life cycle. Moreover, strains were not adapted to germination conditions. Instead, highly plastic responses occurred after transplantation and significantly higher growth rates were observed at higher temperature. High variability of strain-specific responses has probably masked the overall effect of the treatments, highlighting the importance of testing the effect of environmental factors on many strains. It is likely that A.ostenfeldii populations can persist in the future, because suitable strains, which are able to germinate and grow well at potential future climate conditions, are part of the highly diverse cyst population. OPEN RESEARCH BADGESThis article has earned an Open Data Badge for making publicly available the digitally-shareable data necessary to reproduce the reported results. The data is available at .	[Jerney, Jacqueline; Suikkanen, Sanna; Lindehoff, Elin; Kremp, Anke] Finnish Environm Inst, Ctr Marine Res, Helsinki, Finland; [Jerney, Jacqueline] Univ Helsinki, Tvarminne Zool Stn, Hango, Finland; [Lindehoff, Elin] Linnaeus Univ, Ctr Ecol & Evolut Microbial Model Syst, Dept Biol & Environm Sci, EEMiS, Kalmar, Sweden; [Kremp, Anke] Leibniz Inst Ostseeforsch Warnemunde, Rostock, Germany	Finnish Environment Institute; University of Helsinki; Linnaeus University; Leibniz Institut fur Ostseeforschung Warnemunde	Jerney, J (通讯作者)，Finnish Environm Inst, Ctr Marine Res, Helsinki, Finland.	jacqueline.jerney@env.fi		Kremp, Anke/0000-0001-9484-6899; Suikkanen, Sanna/0000-0002-0768-8149; Jerney, Jacqueline/0000-0002-2736-5179	Strategic Research Environment ECOCHANGE; Svenska Forskningsradet Formas; Suomen Akatemia [310449]; Walter ja Andree de Nottbeckin Saatio; Tryggers research Foundation; Marie Sklodowska-Curie grant [659453]; Marie Curie Actions (MSCA) [659453] Funding Source: Marie Curie Actions (MSCA); Academy of Finland (AKA) [310449] Funding Source: Academy of Finland (AKA)	Strategic Research Environment ECOCHANGE; Svenska Forskningsradet Formas(Swedish Research Council Formas); Suomen Akatemia(Research Council of Finland); Walter ja Andree de Nottbeckin Saatio; Tryggers research Foundation; Marie Sklodowska-Curie grant; Marie Curie Actions (MSCA)(Marie Curie Actions); Academy of Finland (AKA)(Research Council of Finland)	Strategic Research Environment ECOCHANGE; Svenska Forskningsradet Formas; Suomen Akatemia, Grant/Award Number: 310449; Walter ja Andree de Nottbeckin Saatio; Tryggers research Foundation; Marie Sklodowska-Curie grant, Grant/Award Number: 659453	Anderson DM, 2006, LIMNOL OCEANOGR, V51, P860, DOI 10.4319/lo.2006.51.2.0860; Anglès S, 2012, HARMFUL ALGAE, V16, P1, DOI 10.1016/j.hal.2011.12.006; [Anonymous], 2018, R LANG ENV STAT COMP; [Anonymous], 2012, 112 SMHI; [Anonymous], REG CLIM STUD; [Anonymous], 2015, Integrated development environment for R; BALECH E, 1985, SARSIA, V70, P333, DOI 10.1080/00364827.1985.10419687; Bell G, 2008, EVOL APPL, V1, P3, DOI 10.1111/j.1752-4571.2007.00011.x; Bewley J. 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Evol.	APR	2019	9	8					4443	4451		10.1002/ece3.5009	http://dx.doi.org/10.1002/ece3.5009			9	Ecology; Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Evolutionary Biology	HV6PB	31031918	gold, Green Published			2025-03-11	WOS:000466104200012
J	Li, Y; Tang, YN; Shen, PP; Li, G; Tan, YH				Li, Ying; Tang, Ya-Nan; Shen, Ping-Ping; Li, Gang; Tan, Ye-Hui			Distribution of harmful dinoflagellate cysts in the surface sediments of Daya Bay of the South China Sea and their relationship to environmental factors	INTERNATIONAL BIODETERIORATION & BIODEGRADATION			English	Article						Dinoflagellate cyst; Temperature; Salinity; Sediment property; Distribution; Harmful algal bloom	GYMNODINIUM-CATENATUM; ALEXANDRIUM-TAMARENSE; CORK HARBOR; YELLOW SEA; TOKYO-BAY; EUTROPHICATION; DINOPHYCEAE; PACIFIC; ASSEMBLAGES; INDICATORS	To investigate the distribution of dinoflagellate cyst and their relationship with environmental factors, surface sediments were collected from 14 stations of Daya Bay of the South China Sea. In total, 44 cyst species and 3 uncertain taxa were identified and the total abundance ranged from 79 to 819 cysts g(-1) dry weight (DW), showing a decreasing trend from the north-west to the south-east of the bay. Based on cluster analysis, three zones were identified. In Zone I (inner bay), the heterotrophic cyst dominated and warm-water species (Alexandrium minuturn/affirte and Gonyaulax spinifera) were observed. In Zone III (bay mouth), cyst assemblage was characterized by halophilic taxon Protoperidinium subinerme. Correlation analysis showed that seawater temperature, salinity and sediment particle size had the greatest impacts on the composition and distribution of cyst assemblage. Furthermore, several toxic species, including Lingulodinium polyedrunt, Alexandrium spp. and Gyinnodinitan catenatum, were observed at most stations, indicating a wide distribution and potential risk of harmful algal blooms in Daya Bay.	[Li, Ying; Tang, Ya-Nan; Shen, Ping-Ping; Li, Gang; Tan, Ye-Hui] Chinese Acad Sci, South China Sea Inst Oceanol, CAS Key Lab Trop Marine Bioresources & Ecol, 164 West Xingang Rd, Guangzhou 510301, Guangdong, Peoples R China; [Li, Ying; Tang, Ya-Nan] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; South China Sea Institute of Oceanology, CAS; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Shen, PP (通讯作者)，Chinese Acad Sci, South China Sea Inst Oceanol, CAS Key Lab Trop Marine Bioresources & Ecol, 164 West Xingang Rd, Guangzhou 510301, Guangdong, Peoples R China.	pshen@scsio.ac.cn	Shen, PP/S-1616-2016		National Basic Research Program of China (973 Program) [2015CB452903]; Open Fund of Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology [LMEES201803]; Natural Science Foundation of Guangdong Province [2017A030313216, 2014A030313778]	National Basic Research Program of China (973 Program)(National Basic Research Program of China); Open Fund of Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology; Natural Science Foundation of Guangdong Province(National Natural Science Foundation of Guangdong Province)	This study was funded by the National Basic Research Program of China (973 Program, 2015CB452903), Open Fund of Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology (LMEES201803) and Natural Science Foundation of Guangdong Province (2017A030313216, 2014A030313778). We would like to thank our team members in South China Sea Institute of Oceanology, CAS for their technical support and assistance.	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Biodeterior. Biodegrad.	APR	2019	139						44	53		10.1016/j.ibiod.2019.02.006	http://dx.doi.org/10.1016/j.ibiod.2019.02.006			10	Biotechnology & Applied Microbiology; Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Environmental Sciences & Ecology	HT3TK					2025-03-11	WOS:000464485900006
J	Gao, YC; Dong, YH; Li, HT; Zhan, AB				Gao, Yangchun; Dong, Yanhong; Li, Haitao; Zhan, Aibin			Influence of environmental factors on spatial-temporal distribution patterns of dinoflagellate cyst communities in the South China Sea	MARINE BIODIVERSITY			English	Article						Algae; Dinoflagellate cysts; High-throughput sequencing; Marine sediment; Metabarcoding	SURFACE SEDIMENTS; BAY; PHYTOPLANKTON; EUTROPHICATION; MASSACHUSETTS; ASSEMBLAGES; ECOSYSTEMS; DIVERSITY; POLLUTION; RECORDS	The spatial-temporal distribution of dinoflagellate cyst (i.e., dinocyst) communities is crucial for understanding the detailed mechanisms of recurrence and spread of harmful algae blooms in marine ecosystems. Here, we employed the newly developed high-throughput sequencing-based metabarcoding to characterize dinocyst communities collected from the South China Sea. Further, we clarified the spatial-temporal distribution patterns and analyzed the correlation between environmental factors and the observed patterns to investigate how they are influenced by environmental factors. Our results showed that the spatial distribution of dinocyst species richness and abundance varied greatly between sampling sites in different seasons. Both redundancy and Pearson analyses showed that the chemical oxygen femand, which could explained 35.0% of the total community variation, had positive correlations with heterotrophic dinocyst richness and negative correlations with autotrophic dinocysts richness. We did not find significant correlations between heavy metals and any features of dinocyst species richness. No environmental factor showed significant effects on dinocyst abundance based on forward selection after excluding colinearity; however, Pearson's correlation analyses showed that the abundance of heterotrophic dinocysts presented a significant positive correlation with Mn (P<0.05). Our results showed that the influence of environmental factors on spatial-temporal distribution of dinocyst species could be region- and/or environment-specific. Consequently, we suggest that detailed investigations should be performed to clarify the influence of varied environmental factors on dinocyst community characteristics in different regions and/or seasons.	[Gao, Yangchun; Zhan, Aibin] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, 18 Shuangqing Rd, Beijing 100085, Peoples R China; [Gao, Yangchun; Zhan, Aibin] Univ Chinese Acad Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China; [Dong, Yanhong; Li, Haitao] State Ocean Adm, South China Sea Environm Monitoring Ctr, 155 Xingang Rd West, Guangzhou 510300, Guangdong, Peoples R China	Chinese Academy of Sciences; Research Center for Eco-Environmental Sciences (RCEES); Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Zhan, AB (通讯作者)，Chinese Acad Sci, Res Ctr Ecoenvironm Sci, 18 Shuangqing Rd, Beijing 100085, Peoples R China.; Zhan, AB (通讯作者)，Univ Chinese Acad Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.	zhanaibin@hotmail.com	Zhan, Aibin/A-7240-2011; 高, 养春/ITT-9176-2023		100-Talent Program of the Chinese Academy of Sciences	100-Talent Program of the Chinese Academy of Sciences(Chinese Academy of Sciences)	This work was partially supported by the 100-Talent Program of the Chinese Academy of Sciences to A.Z.	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Biodivers.	APR	2019	49	2					769	781		10.1007/s12526-018-0850-4	http://dx.doi.org/10.1007/s12526-018-0850-4			13	Biodiversity Conservation; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation; Marine & Freshwater Biology	HS2IP					2025-03-11	WOS:000463684600015
J	Chan, WS; Kwok, ACM; Wong, JTY				Chan, Wai Sun; Kwok, Alvin Chun Man; Wong, Joseph Tin Yum			Knockdown of Dinoflagellate Cellulose Synthase <i>CesA1</i> Resulted in Malformed Intracellular Cellulosic Thecal Plates and Severely Impeded Cyst-to-Swarmer Transition	FRONTIERS IN MICROBIOLOGY			English	Article						cellulose synthesis; CesA; dinoflagellate; cell wall; cellulose synthase; thecal plates; cyst	CELL-CYCLE PROGRESSION; CRYPTHECODINIUM-COHNII; GONYAULAX-POLYEDRA; LINGULODINIUM-POLYEDRUM; SYNTHESIZING COMPLEXES; PLASMA-MEMBRANE; GENE-EXPRESSION; CALCIUM; PELLICLE; BIOLUMINESCENCE	Cellulose synthesis (CS) is conducted by membrane-bound cellulose synthase complexes (CSCs), containing cellulose synthases (CesA), that are either arranged in hexagonal structures in higher plants or in linear arrays in most microbial organisms, including dinoflagellates. Dinoflagellates are a major phytoplankton group having linear-type CSCs and internal cellulosic thecal plates (CTPs) in large cortical vesicles. Immunological study suggested CesA1p were cortically localized to the periphery of CTPs. During cyst-to-swarmer transition (TC-S), synchronized peaks of CesA1 transcription, CesA1p expression, CS and CTP formation occurred in respective order, over 12-16 h, strategically allowing the study of CS regulation and CTP biogenesis. CesA1-knockdown resulted in 40% reduction in CesA1p level and time required for swarmer cells reappearance. CTPs were severely malformed with reduced cellulose content. As CTPs are deposited in internal organelle, the present study demonstrated dinoflagellate CesA1 ortholog was adapted for non-surface deposition; this is different to paradigm of other CesAps which require plasmamembrane for cellulose fiber deposition. This pioneer gene-knockdown study demonstrated the requirement of a gene for dinoflagellate cell wall remodeling and proper TC-S, which are prominent in dinoflagellate life-cycles.	[Chan, Wai Sun; Kwok, Alvin Chun Man; Wong, Joseph Tin Yum] Hong Kong Univ Sci & Technol, Div Life Sci, Hong Kong, Peoples R China	Hong Kong University of Science & Technology	Wong, JTY (通讯作者)，Hong Kong Univ Sci & Technol, Div Life Sci, Hong Kong, Peoples R China.	botin@ust.hk			Hong Kong Research Grant Council [CERG662707, GRF16101415]; HKUST [FSGRF14SC13]	Hong Kong Research Grant Council(Hong Kong Research Grants Council); HKUST	This work and the transcriptome data was in part supported by grants CERG662707 and GRF16101415 from the Hong Kong Research Grant Council and FSGRF14SC13 from HKUST to JW.	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Microbiol.	MAR 19	2019	10								546	10.3389/fmicb.2019.00546	http://dx.doi.org/10.3389/fmicb.2019.00546			14	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	HP3CO	30941114	Green Published, gold			2025-03-11	WOS:000461553700001
J	Wu, HX; Shen, C; Wang, Q; Aronson, RB; Chen, C; Xue, JZ				Wu Huixian; Shen Chen; Wang Qiong; Aronson, Richard B.; Chen Chen; Xue Junzeng			Survivorship characteristics and adaptive mechanisms of phytoplankton assemblages in ballast water	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						diversity abundances; Yangshan Port; dominant algae; ballast water age; source	REAL-TIME PCR; RISK-ASSESSMENT; SHIPS; MARINE; TRANSPORT; DINOFLAGELLATE; ORGANISMS; EXCHANGE; VOYAGE; CYSTS	Phytoplankton diversity and abundance were determined in ballast water from 26 vessels in the Shanghai Yangshan Deep-Water Port from April 2015 to January 2016. In total, 84 species of phytoplankton were identified, belonging to 43 genera and 5 phyla. Bacillariophyta (75.0%, including 30 genera and 63 species) were the dominant algae in the ballast water. Their density ranged from (5.55 +/- 9.62) SD to (1.878 +/- 0.872)x10(3) cells/L, with a mean of 410.1 cells/L. Nine potentially harmful phytoplankton taxa were detected: Ceratium furca, Ce. marcroceros, Leptocylindrus danicus, Coscinodiscus radiatus, Co. granii, Prorocentrum micans, Melosira sulcata, Meuniera membranacea and Skeletonema costatum. Our survey and identification results showed that Microcystis aeruginosa, Ankistrodesmus falcatus and Scenedesmus survived in the high-salinity ballast water, even though they are freshwater species. We identified the common features of surviving phytoplankton and impacts on the phytoplankton assemblage of ballast water age and source. Our goal was to understand the adaptative mechanisms of phytoplankton in ballast water, providing statistical and theoretical support for future ballast water research and suggesting a scientific basis of ballast water management and inspection of vessels entering the port.	[Wu Huixian; Shen Chen; Wang Qiong; Chen Chen; Xue Junzeng] Shanghai Ocean Univ, Coll Marine Ecol & Environm, Shanghai 201306, Peoples R China; [Wu Huixian; Shen Chen; Wang Qiong; Chen Chen; Xue Junzeng] Shanghai Ocean Univ, Ballast Water Detecting Lab, Shanghai 201306, Peoples R China; [Aronson, Richard B.; Xue Junzeng] Florida Inst Technol, Dept Biol Sci, Melbourne, FL 32901 USA	Shanghai Ocean University; Shanghai Ocean University; Florida Institute of Technology	Xue, JZ (通讯作者)，Shanghai Ocean Univ, Coll Marine Ecol & Environm, Shanghai 201306, Peoples R China.; Xue, JZ (通讯作者)，Shanghai Ocean Univ, Ballast Water Detecting Lab, Shanghai 201306, Peoples R China.; Xue, JZ (通讯作者)，Florida Inst Technol, Dept Biol Sci, Melbourne, FL 32901 USA.	jzxue@shou.edu.cn	Wu, Huixian/N-6353-2014		Natural Science Foundation of Shanghai [15ZR1420900]; Shanghai Science and Technology Commission Research Project [17DZ1202905]; Shanghai Science and Technology Commission Development Platform Special [16DZ2293800]	Natural Science Foundation of Shanghai(Natural Science Foundation of Shanghai); Shanghai Science and Technology Commission Research Project; Shanghai Science and Technology Commission Development Platform Special	Supported by the Natural Science Foundation of Shanghai (No. 15ZR1420900), the Shanghai Science and Technology Commission Research Project (No. 17DZ1202905), and the Shanghai Science and Technology Commission Development Platform Special (No. 16DZ2293800)	[Anonymous], 2018, SHANGH PORTS NEWS AP; [Anonymous], 2007, 173787200 GB; [Anonymous], 2004, INT CONV CONTR MAN S; [Anonymous], 1990, DIATOMS BIOL MORPHOL, DOI DOI 10.2307/1222958; [Anonymous], 2007, 173784200 GB; Antonella P, 2013, ENVIRON SCI POLLUT R, V20, P6851, DOI 10.1007/s11356-012-1377-z; Burkholder JM, 2007, HARMFUL ALGAE, V6, P486, DOI 10.1016/j.hal.2006.11.006; CARLTON JT, 1993, SCIENCE, V261, P78, DOI 10.1126/science.261.5117.78; CARLTON JT, 1985, OCEANOGR MAR BIOL, V23, P313; Casas-Monroy O, 2016, MAR BIOL, V163, DOI 10.1007/s00227-016-2946-3; Casas-Monroy O, 2015, PLOS ONE, V10, DOI 10.1371/journal.pone.0118267; Casas-Monroy O, 2011, AQUAT INVASIONS, V6, P231, DOI 10.3391/ai.2011.6.3.01; Chen XF, 2016, CHIN J OCEANOL LIMN, V34, P86, DOI 10.1007/s00343-015-4265-9; Chu KH, 1997, HYDROBIOLOGIA, V352, P201, DOI 10.1023/A:1003067105577; David M, 2007, MAR POLLUT BULL, V54, P53, DOI 10.1016/j.marpolbul.2006.08.041; David M, 2015, INVAD NAT SPRING SER, V8, P133, DOI 10.1007/978-94-017-9367-4_7; Dickman M, 1999, MAR ECOL PROG SER, V176, P253, DOI 10.3354/meps176253; Fahnenstiel G, 2009, TRANSPORT ENG AUSTR, V30, P353; Feng D, 2015, CHEMOSPHERE, V125, P102, DOI 10.1016/j.chemosphere.2014.11.060; Galluzzi L, 2011, J MICROBIOL METH, V84, P234, DOI 10.1016/j.mimet.2010.11.024; Gollasch S, 2000, J PLANKTON RES, V22, P923, DOI 10.1093/plankt/22.5.923; Guo Y G, 2003, CHINA SEAWEED; HALLEGRAEFF GM, 1991, MAR POLLUT BULL, V22, P27, DOI 10.1016/0025-326X(91)90441-T; Hamer JP, 2000, MAR POLLUT BULL, V40, P731, DOI 10.1016/S0025-326X(99)00198-8; Hamer JP, 2001, PHYCOLOGIA, V40, P246, DOI 10.2216/i0031-8884-40-3-246.1; Handy SM, 2008, HARMFUL ALGAE, V7, P599, DOI 10.1016/j.hal.2007.12.018; Hu H., 2006, The freshwater algae of China. 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Oceanol. Limnol.	MAR	2019	37	2					580	588		10.1007/s00343-019-7288-9	http://dx.doi.org/10.1007/s00343-019-7288-9			9	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	HT9MV					2025-03-11	WOS:000464895600017
J	Jenhani, AB; Fathalli, A; Ben Naceur, H; Hayouni, D; Aouani, J; Romdhane, MS				Jenhani, Amel Ben Rejeb; Fathalli, Afef; Ben Naceur, Hachem; Hayouni, Dhekra; Aouani, Jaafer; Romdhane, Mohamed Salah			Screening for alien and harmful planktonic species in the Gulf of Gabes (Tunisia, Southeastern Mediterranean Sea)	REGIONAL STUDIES IN MARINE SCIENCE			English	Article						Dinophyceae cysts; Harmful species; Invasive species; Plankton	SHIPS BALLAST WATER; ALGAL BLOOMS; DINOFLAGELLATE CYSTS; RESTING STAGES; MARINE; PHYTOPLANKTON; BIOGEOGRAPHY; SEDIMENTS; BIOINVASIONS; GYMNODIMINE	The Gulf of Gabes, pole of shellfish production in Tunisia, is known by a great maritime traffic. The objective of the present study is to update the planktonic organisms listing and to screen alien and harmful planktonic species in the Gulf. The investigations, conducted in the four commercial ports of the Gulf of Gabes, in 2010, revealed the presence of 138 phytoplankton taxa dominated by the Dinophyceae and Bacillariophyceae and 37 Dinophyceae rest forms from which 17 were not found in their active form. Among the alien phytoplankton species in the Mediterranean, we identified 4 species in water and 6 Dinophyceae cysts taxa in sediments of the Gulf of Gabes. The four encysted forms of potentially toxic dinoflagellates, detected in this work, were wholly non-indigenous species. Eleven known harmful phytoplanktonic species, including 2 native species of Diatoms (Chaetoceros socialis and Pseudo-nitzschia sp.) and 9 Dinophyceae including the non-indigenous species Alexandrium minutum and Karenia selliformis were found during this study. The qualitative analysis of zooplankton in the gulf of Gabes showed the common presence of 21 groups which the most important is copepods. It revealed also the presence of the two Alien species Acartia (Acanthacartia) bifilosa and Paracartia (Acartia) grani. (C) 2019 Elsevier B.V. All rights reserved.	[Jenhani, Amel Ben Rejeb; Hayouni, Dhekra; Romdhane, Mohamed Salah] Inst Natl Agron Tunisie, Unite Rech Ecosyst & Ressources Aquat, 43 Ave Charles Nicolle, Tunis Mahrajene 1082, Tunisia; [Fathalli, Afef] Inst Natl Sci & Technol Mer, Tunis 2060, Tunisia; [Aouani, Jaafer] SOTINFOR, SERAH, Tunis, Tunisia; [Ben Naceur, Hachem] Inst Super Biotechnol Monastir, Lab Rech Bioressources Biol Integrat & Valorisat, Monastir, Tunisia	Universite de Carthage; Institut National des Sciences et Technologies de la Mer; Universite de Monastir	Fathalli, A (通讯作者)，Inst Natl Sci & Technol Mer, Tunis 2060, Tunisia.	fathalli_afef@yahoo.fr	Romdhane, Mohamed Salah/GTB-5864-2022					Abdenadher M, 2012, ESTUAR COAST SHELF S, V106, P102, DOI 10.1016/j.ecss.2012.04.029; [Anonymous], THESIS; [Anonymous], 1984, INTRO PRATIQUE SYSTE; [Anonymous], B I NATN SCI TECH ME; [Anonymous], 2003, THESIS; [Anonymous], 1990, Atlas du phytoplancton marin Chlorarachniophycees, chlorophycees, chrysophycees, cryptophycees, eugle`nophycees, eustigmatophycees, prasinophycees, prymnesiophycees, rhodophycees et tribophycees.; Audemard C, 2004, DIS AQUAT ORGAN, V61, P103, DOI 10.3354/dao061103; Aune T, 2002, TOXICON, V40, P77, DOI 10.1016/S0041-0101(01)00192-1; Belmonte G., 1999, Biologia Marina Mediterranea, V6, P172; Belmonte G, 1995, OLSEN INT S, P53; Belmonte G, 2001, HYDROBIOLOGIA, V453, P171, DOI 10.1023/A:1013192623131; Ben Amor O., 2006, P 8 C INT LIMN EXPR, P44; Ben Ismail S, 2012, DEEP-SEA RES PT I, V63, P65, DOI 10.1016/j.dsr.2011.12.009; Ben Lamine Y., 2012, B I NATL SCI TECH ME, V39, P114; Berard-Therriault L., 1999, Publ spec can sci halieut aquat, V128, P1; Blackburn S., 2005, Algal Culturing Techniques, P399; Blanco J, 1999, MAR ECOL PROG SER, V176, P153, DOI 10.3354/meps176153; Boudouresque C.F., 2002, Alien Marine Organisms Introduced by Ships in the Mediterranea and Black Seas, V20, P53; BRAVO I, 1990, TOXIC MARINE PHYTOPLANKTON, P449; Chambouvet A, 2008, SCIENCE, V322, P1254, DOI 10.1126/science.1164387; Cleve-Euler A., 1951, DIATOMEEN SCHWEDEN F; Corriero G, 2016, AQUAT CONSERV, V26, P392, DOI 10.1002/aqc.2550; Dale B., 1983, P69; DALE B, 1978, OCEANUS, V21, P41; DGPA, 2007, STAT PECH DIR GEN PE; DGPA, 2006, STAT PECH DIR GEN PE; DGPA, 2005, STAT PECH DIR GEN PE; DGPA, 2008, STAT PECH DIR GEN PE; DGPA, 2009, STAT PECH DIR GEN PE; Drira Z, 2008, SCI MAR, V72, P59; Dukes J., 2003, GLOBAL CLIMATE CHANG, P25; Dussart B. 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Stud. Mar. Sci.	MAR	2019	27								100526	10.1016/j.rsma.2019.100526	http://dx.doi.org/10.1016/j.rsma.2019.100526			10	Ecology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	HT6NO					2025-03-11	WOS:000464681100014
J	Keeler, DM; Grandal, MK; McCall, JR				Keeler, Devon M.; Grandal, Meghan K.; McCall, Jennifer R.			Brevenal, a Marine Natural Product, is Anti-Inflammatory and an Immunomodulator of Macrophage and Lung Epithelial Cells	MARINE DRUGS			English	Article						brevenal; marine natural product; immunomodulator; anti-inflammatory; cystic fibrosis; COPD; asthma; cytokine; chemokine; macrophage activation; macrophage phenotype; mucociliary clearance	DINOFLAGELLATE KARENIA-BREVIS; CHANGING EPIDEMIOLOGY; BREVETOXINS; MECHANISMS; TOXIN; MODEL	Chronic respiratory diseases, including chronic obstructive pulmonary disease (COPD), cystic fibrosis, and asthma, are some of the leading causes of illness and fatalities worldwide. The search for novel treatments led to the exploration of marine natural products as drug candidates to combat the debilitating effects of mucus accumulation and chronic inflammation. Previous research showed that an alga-derived compound, brevenal, could attenuate the effects of inflammatory agents, but the mechanisms by which it exerted its effects remained unclear. We investigated the effects of brevenal on lipopolysaccharide (LPS) induced cytokine/chemokine production from murine macrophages and human lung epithelial cells. It was found that brevenal reduces proinflammatory mediator secretion while preserving anti-inflammatory secretion from these cells. Furthermore, we found that brevenal does not alter cell surface Toll-like receptor 4 (TLR4) expression, thereby maintaining the cells' ability to respond to bacterial infection. However, brevenal does alter macrophage activation states, as demonstrated by reduced expression of both M1 and M2 phenotype markers, indicating this putative anti-inflammatory drug shifts innate immune cells to a less active state. Such a mechanism of action would be ideal for reducing inflammation in the lung, especially with patients suffering from chronic respiratory diseases, where inflammation can be lethal.	[Keeler, Devon M.; Grandal, Meghan K.; McCall, Jennifer R.] UNCW Ctr Marine Sci, 5600 Marvin K Moss Lane, Wilmington, NC 28409 USA	University of North Carolina; University of North Carolina Wilmington	McCall, JR (通讯作者)，UNCW Ctr Marine Sci, 5600 Marvin K Moss Lane, Wilmington, NC 28409 USA.	dmk9506@uncw.edu; grandal@musc.edu; mccalljr@uncw.edu	McCall, Jennifer/AFU-2750-2022		Cahill Program Award from the University of North Carolina Wilmington	Cahill Program Award from the University of North Carolina Wilmington	This research was funded in part by a Cahill Program Award from the University of North Carolina Wilmington.	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Drugs	MAR	2019	17	3							184	10.3390/md17030184	http://dx.doi.org/10.3390/md17030184			14	Chemistry, Medicinal; Pharmacology & Pharmacy	Science Citation Index Expanded (SCI-EXPANDED)	Pharmacology & Pharmacy	HW0UW	30897777	Green Published, Green Submitted, gold			2025-03-11	WOS:000466398200048
J	Thoha, H; Muawanah; Intan, MDB; Rachman, A; Sianturi, OR; Sidabutar, T; Iwataki, M; Takahashi, K; Avarre, JC; Masseret, E				Thoha, Hikmah; Muawanah; Intan, Mariana D. Bayu; Rachman, Arief; Sianturi, Oksto Ridho; Sidabutar, Tumpak; Iwataki, Mitsunori; Takahashi, Kazuya; Avarre, Jean-Christophe; Masseret, Estelle			Resting Cyst Distribution and Molecular Identification of the Harmful Dinoflagellate <i>Margalefidinium polykrikoides</i> (Gymnodiniales, Dinophyceae) in Lampung Bay, Sumatra, Indonesia	FRONTIERS IN MICROBIOLOGY			English	Article						Margalefidinium polykrikoides; dinoflagellate; harmful algal blooms; resting and hyaline cysts; Indonesia	KOREAN COASTAL WATERS; COCHLODINIUM-POLYKRIKOIDES; ALEXANDRIUM-CATENELLA; PHYLOGENETIC-RELATIONSHIPS; UNARMORED DINOFLAGELLATE; COMPLEX DINOPHYCEAE; SP-NOV; SEDIMENTS; BLOOMS; MORPHOLOGY	Margalefidinium polykrikoides, an unarmored dinoflagellate, was suspected to be the causative agent of the harmful algal blooms - associated with massive fish mortalities - that have occurred continually in Lampung Bay, Indonesia, since the first bloom event in October 2012. In this study, after examination of the morphology of putative M. polykrikoides-like cysts sampled in bottom sediments, cyst bed distribution of this harmful species was explored in the inner bay. Sediment samples showed that resting cysts, including several morphotypes previously reported as M. polykrikoides, were most abundant on the northern coast of Lampung Bay, ranging from 20.6 to 645.6 cysts g(-1) dry sediment. Molecular phylogeny inferred from LSU rDNA revealed that the so-called Mediterranean ribotype was detected in the sediment while M. polykrikoides motile cells, four-cell chain forming in bloom conditions, belonged to the American-Malaysian ribotype. Moreover, hyaline cysts, exclusively in the form of four-cell chains, were also recorded. Overall, these results unequivocally show that the species M. polykrikoides is abundantly present, in the form of vegetative cells, hyaline and resting cysts in an Indonesian area.	[Thoha, Hikmah; Intan, Mariana D. Bayu; Rachman, Arief; Sianturi, Oksto Ridho; Sidabutar, Tumpak; Masseret, Estelle] Indonesian Inst Sci, Res Ctr Oceanog, Jakarta, Indonesia; [Muawanah] Directorate Gen Aquaculture, Main Ctr Marine Aquaculture Lampung, Lampung, Indonesia; [Iwataki, Mitsunori; Takahashi, Kazuya] Univ Tokyo, Asian Nat Environm Sci Ctr, Tokyo, Japan; [Avarre, Jean-Christophe] Univ Montpellier, ISEM, IRD, CNRS,EPHE, Montpellier, France; [Masseret, Estelle] Univ Montpellier, IRD, CNRS, Ifnamer,MARBEC, Montpellier, France	National Research & Innovation Agency of Indonesia (BRIN); Indonesian Institute of Sciences (LIPI); University of Tokyo; Universite PSL; Ecole Pratique des Hautes Etudes (EPHE); Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Developpement (IRD); Universite de Montpellier; Institut de Recherche pour le Developpement (IRD); Ifremer; Centre National de la Recherche Scientifique (CNRS); Universite de Montpellier	Avarre, JC (通讯作者)，Univ Montpellier, ISEM, IRD, CNRS,EPHE, Montpellier, France.	jean-christophe.avarre@ird.fr	Intan, Mariana/AAA-2212-2020; Sidabutar, Tumpak/GPP-3873-2022; Rachman, Arief/GWM-8363-2022; Avarre, Jean-Christophe/E-4170-2019; Takahashi, Kazuya/LCD-6164-2024; Iwataki, Mitsunori/H-9640-2019	Avarre, Jean-Christophe/0000-0001-6899-7052; Sianturi, Oksto Ridho/0000-0002-8805-6767; Intan, Mariana DB/0000-0002-7391-5979; Takahashi, Kazuya/0000-0003-1349-1120; Iwataki, Mitsunori/0000-0002-5844-2800; Rachman, Arief/0000-0001-8603-0611	Research Center for Oceanography-LIPI; Main Center for Marine Aquaculture of Lampung-Balai Besar Perikanan Budidaya Laut Lampung (Indonesia); Institut de Recherche pour le Developpement (IRD); University of Montpellier (France); JSPS KAKENHI [25304029]; Core-to-Core Program (B. Asia-Africa Science Platforms) of JSPS (Japan); Grants-in-Aid for Scientific Research [25304029] Funding Source: KAKEN	Research Center for Oceanography-LIPI; Main Center for Marine Aquaculture of Lampung-Balai Besar Perikanan Budidaya Laut Lampung (Indonesia); Institut de Recherche pour le Developpement (IRD); University of Montpellier (France); JSPS KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Core-to-Core Program (B. Asia-Africa Science Platforms) of JSPS (Japan); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	This work was supported by the Research Center for Oceanography-LIPI, the Main Center for Marine Aquaculture of Lampung-Balai Besar Perikanan Budidaya Laut Lampung (Indonesia), the Institut de Recherche pour le Developpement (IRD) who also funded Estelle Masseret's research stay at the RCO-LIPI in Jakarta, the University of Montpellier (France) and the Grants-in-Aid for Scientific Research, JSPS KAKENHI 25304029, and the Core-to-Core Program (B. Asia-Africa Science Platforms) of JSPS (Japan).	Aditya V., 2013, Mar. Res. 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J	Mazzega, E; Beran, A; Cabrini, M; de Marco, A				Mazzega, Elisa; Beran, Alfred; Cabrini, Marina; de Marco, Ario			<i>In vitro</i> isolation of nanobodies for selective <i>Alexandrium minutum</i> recognition: A model for convenient development of dedicated immunoreagents to study and diagnostic toxic unicellular algae	HARMFUL ALGAE			English	Article						Dinoflagellate detection; Harmful algal bloom; Panning strategy; Fluobodies; Nanobodies	TAMARENSE SPECIES COMPLEX; SINGLE-DOMAIN ANTIBODIES; BLOOMS; DINOFLAGELLATE; MICROALGAE; SURFACE; ASSAY; GENE	At the present, the identification of planktonic species in coastal water is still a time intensive process performed by highly trained personnel that relies either on qPCR or on light microscopy observation and in vitro culturing. Furthermore, the increasing danger represented by Harmful Algal Blooms (HABs) inside phytoplankton community and the recent implementation of the legislation on ballast water management to prevent the introduction of HABs and NIS (Non Indigenous Species) urge the development of faster and reliable diagnostic methods. Immuno-based approaches could fulfil this need provided that the costs for antibody selection and production will be reduced. In this work it is demonstrated for the first time the feasibility to recover nanobodies (VHHs) selective for native surface epitopes of Alexandrium minutum by direct whole cell bio-panning using a pre-immune phage display library. The recombinant nature of VHHs enabled their rapid engineering into eGFP fluorescent reagents (fluobodies) that were produced recombinantly in bacteria and are directly suitable for fluorescence microscopy and flow cytometry. Immune-detection identified also cysts and anti-Alexandrium fluobodies showed no cross-reactivity with indigenous not-toxic phytoplankton microalgae belonging to different geni. The fluobodies were able to bind selectively to the target cells in both fixed and fresh samples with minimal processing.	[Mazzega, Elisa; de Marco, Ario] Univ Nova Gorica, Lab Environm & Life Sci, Nova Gorica, Slovenia; [Beran, Alfred; Cabrini, Marina] Ist Nazl Oceanog & Geofis Sperimentale OGS, Trieste, Italy	University of Nova Gorica; Istituto Nazionale di Oceanografia e di Geofisica Sperimentale	de Marco, A (通讯作者)，Univ Nova Gorica, LELS, Vipavska Cesta 13, S-5000 Nova Gorica, Slovenia.	ario.demarco@ung.si	de Marco, Ario/A-2760-2014	de Marco, Ario/0000-0001-7729-819X; Beran, Alfred/0000-0003-3723-4161	ARRS program [P4-0107];  [1degrees str/0005]	ARRS program(Slovenian Research Agency - Slovenia); 	AdM and EM were supported by the ARRS program P4-0107. The microalgae strains were isolated in the frame of IPA Adriatic Cross-Border Cooperation Programme -strategic project Ballast Water Management System for Adriatic Sea Protection (BALMAS) (Project Code 1 degrees str/0005). 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J	Zhao, Y; Yu, RC; Kong, FZ; Wei, CJ; Liu, Z; Geng, HX; Dai, L; Zhou, ZX; Zhang, QC; Zhou, MJ				Zhao, Yue; Yu, Ren-Cheng; Kong, Fan-Zhou; Wei, Chuan-Jie; Liu, Ze; Geng, Hui-Xia; Dai, Li; Zhou, Zheng-Xi; Zhang, Qing-Chun; Zhou, Ming-Jiang			Distribution Patterns of Picosized and Nanosized Phytoplankton Assemblages in the East China Sea and the Yellow Sea: Implications on the Impacts of Kuroshio Intrusion	JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS			English	Article							AUREOCOCCUS-ANOPHAGEFFERENS HARGRAVES; COMMUNITY STRUCTURE; PICOPLANKTON DISTRIBUTION; HETEROTROPHIC BACTERIA; MARINE SYNECHOCOCCUS; WATER MASSES; PROCHLOROCOCCUS ECOTYPES; DINOFLAGELLATE CYSTS; SUBSURFACE WATER; PICOPHYTOPLANKTON	Kuroshio, the strongest west boundary current of the Pacific Ocean, has significant impacts on the oceanographic conditions and ecological processes of the Pacific-Asian marginal seas through exchange of water, heat, and materials. In two cruises organized in the East China Sea (ECS) and the Yellow Sea in the spring 2014, observations of picosized and nanosized phytoplankton assemblages using flow cytometry reflected potential impacts of Kuroshio intrusion on phytoplankton communities, particularly in the ECS. The distribution pattern of Prochlorococcus in the ECS clearly depicts the intrusion route of Nearshore Kuroshio Branch Current from the main stream of Kuroshio northeast to Taiwan Island to the coastal waters adjacent to the Changjiang River estuary, an important red tide zone in the coastal waters of China. High abundance of photosynthetic nanoeukaryotes in the coastal waters adjacent to the Changjiang River estuary reflects the occurrence of diatom and dinoflagellate blooms during the investigation. The presence of Prochlorococcus in the coastal waters adjacent to the Changjiang River estuary offers a strong evidence that waters and materials associated with Nearshore Kuroshio Branch Current could be transported into the red tide zone adjacent to the Changjiang River estuary and will affect dynamics of harmful algal blooms in this region. Plain Language Summary Kuroshio is the strongest west Pacific boundary current. The oceanographic and ecological processes of Pacific Asian marginal seas are strongly affected by Kuroshio and its branches. During spring 2014, two cruises were conducted in the East China Sea and the Yellow Sea to find out how Kuroshio intrusion influence the environment and phytoplankton there. Four phytoplankton assemblages with different distribution patterns were detected by flow-cytometry. The assemblage with larger cell size (nanoeukaryotes) preferred to live in the coastal waters and reflected harmful algal blooms in the sea area adjacent to Changjiang River estuary. The abundance of the smallest photosynthetic organism Prochlorococcus was the highest where Kuroshio main stream flows by. The distribution pattern of Prochlorococcus in the East China Sea well depicted the route of a branch stretched from Kuroshio to the coastal waters adjacent to Changjiang River estuary (Nearshore Kuroshio Branch Current), and Prochlorococcus could be an indicator to reflect the influence Kuroshio intrusion has on phytoplankton. The results provide important aspect that open ocean could affect coastal ecological problems related to phytoplankton, such as harmful algal blooms.	[Zhao, Yue; Yu, Ren-Cheng; Kong, Fan-Zhou; Geng, Hui-Xia; Dai, Li; Zhou, Zheng-Xi; Zhang, Qing-Chun; Zhou, Ming-Jiang] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Zhao, Yue; Yu, Ren-Cheng; Dai, Li] Univ Chinese Acad Sci, Coll Earth & Planetary Sci, Beijing, Peoples R China; [Yu, Ren-Cheng; Kong, Fan-Zhou; Zhang, Qing-Chun] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Yu, Ren-Cheng; Kong, Fan-Zhou; Wei, Chuan-Jie; Liu, Ze; Geng, Hui-Xia; Zhou, Zheng-Xi; Zhang, Qing-Chun] Ctr Ocean Mega Sci, Qingdao, Peoples R China; [Wei, Chuan-Jie] Chinese Acad Sci, Inst Oceanol, Engn & Technol Dept, Qingdao, Peoples R China; [Wei, Chuan-Jie; Liu, Ze] Qingdao Natl Lab Marine Sci & Technol, Lab Ocean Dynam & Climate, Qingdao, Peoples R China; [Liu, Ze] Chinese Acad Sci, Inst Oceanol, Key Lab Ocean Circulat & Waves, Qingdao, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Institute of Oceanology, CAS	Yu, RC (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Yu, RC (通讯作者)，Univ Chinese Acad Sci, Coll Earth & Planetary Sci, Beijing, Peoples R China.; Yu, RC (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Yu, RC (通讯作者)，Ctr Ocean Mega Sci, Qingdao, Peoples R China.	rcyu@qdio.ac.cn	lidong, dai/AGO-6525-2022; Zhou, Zhengxi/U-4968-2019; Yu, Rencheng/J-4450-2017; Geng, Hui-Xia/X-5380-2018	Yu, Rencheng/0000-0001-6430-9224; Zhou, Zhengxi/0000-0001-7482-4297; Geng, Hui-Xia/0000-0002-6398-7864; Dai, Lidong/0000-0002-9081-765X; Chuanjie, Wei/0000-0002-1430-4887	National key R&D Program of China [2017YFC1404304]; Qingdao National Laboratory for Marine Science and Technology [2016ASKJ02]; Shandong province; National Natural Science Foundation of China (NSFC) [U1606404]; Strategic Priority Research Program of Chinese Academy of Sciences (CAS) [XDA11020304]	National key R&D Program of China; Qingdao National Laboratory for Marine Science and Technology; Shandong province; National Natural Science Foundation of China (NSFC)(National Natural Science Foundation of China (NSFC)); Strategic Priority Research Program of Chinese Academy of Sciences (CAS)	The data of hydrographic parameters were downloaded from Marine Science Data Center of Institute of Oceanology, Chinese Academy of Sciences with permission (http://msdc.qdio.ac.cn/).Data of chlorophyll a concentration and phytoplankton assemblages were collected through cruises and can be found in the supporting information Table S1. This study was supported by The National key R&D Program of China (grant 2017YFC1404304), the Program of the Qingdao National Laboratory for Marine Science and Technology (grant 2016ASKJ02), the project jointly supported by Shandong province and the National Natural Science Foundation of China (NSFC; grant U1606404), and the Strategic Priority Research Program of Chinese Academy of Sciences (CAS; grant XDA11020304).	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Res.-Oceans	FEB	2019	124	2					1262	1276		10.1029/2018JC014681	http://dx.doi.org/10.1029/2018JC014681			15	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	HP7GR					2025-03-11	WOS:000461856400026
J	Lira, B; Tavera, R				Lira, Beatriz; Tavera, Rosaluz			Life history and cell cycle of <i>Durinskia baltica</i> (Dinophyceae: Peridiniales) in culture	NOVA HEDWIGIA			English	Article						Dinophyceae; life cycle; ontogenesis; Peridiniales	SEXUAL REPRODUCTION; DINOFLAGELLATE; ENCYSTMENT; CYSTS; EXCYSTMENT	Durinskia baltica is a dinophyte whose presence has been reported over a wide ecological range (freshwater, brackish and marine environments) but has been studied mostly in temperate regions. Although there are some studies about its taxonomy, its life cycle is only partially known. Knowing the life cycle is important to understand various ecological aspects of dinophytes like bloom events, which have been reported recently in freshwater environments. In this study we describe the life cycle of a tropical freshwater strain of Durinskia baltica, identifying the different resting structures in asexual and sexual reproductive phases and the occurrence of meiosis. Cells were isolated from samples collected at a natural tropical freshwater site and maintained in culture. The photographic material was obtained with light and epifluorescence microscopy over alive culture material. We present the first description of the pellicle cyst that appears in the sexual phase of the life cycle and identify three alternative sexual routes: direct division of the planozygote by meiosis, temporary sexual encystment, and the formation of a hypnozygote with a short dormancy period. It was also found that the duration of the phases and meiosis timing are related directly to the route of the cycle that the organism follows. We conclude that, for D. baltica the presence of different routes after syngamy is a key response for the species' survival when short-term environmental changes (as in the studied water body) have more impact than seasonal transitions, as it occurs in temperate regions.	[Lira, Beatriz] Univ Nacl Autonoma Mexico, Posgrad Ciencias Mar & Limnol, Univ City 04510, DF, Mexico; [Tavera, Rosaluz] Univ Nacl Autonoma Mexico, Sci Fac, Dept Ecol & Nat Resources, Univ City 04510, DF, Mexico	Universidad Nacional Autonoma de Mexico; Universidad Nacional Autonoma de Mexico	Lira, B (通讯作者)，Univ Nacl Autonoma Mexico, Posgrad Ciencias Mar & Limnol, Univ City 04510, DF, Mexico.	bealirah@ciencias.unam.mx	Lira, Beatriz/LQL-2090-2024		Consejo Nacional de Ciencia y Tecnologia (CONACYT) [368241]	Consejo Nacional de Ciencia y Tecnologia (CONACYT)(Consejo Nacional de Ciencia y Tecnologia (CONACyT))	We thank Consejo Nacional de Ciencia y Tecnologia (CONACYT) for awarding BL the PhD degree grant No. 368241. We also appreciate the contribution of Dr. Karin Rengefors of Lund University in Sweden and Dr. Matthew W. Parrow from the Department of Biology of the University of North Carolina at Charlotte for their valuable guidance and advice for the development of this paper. We also extend our gratefulness to Editor and adaptor Diego Salazar for proofreading the manuscript, and to two anonymous reviewers for the revision and comments of this paper.	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J	Saburova, M; Chomérat, N				Saburova, Maria; Chomerat, Nicolas			<i>Laciniporus arabicus</i> gen. et sp. nov. (Dinophyceae, Peridiniales), a new thecate, marine, sand-dwelling dinoflagellate from the northern Indian Ocean (Arabian Sea)<SUP>1</SUP>	JOURNAL OF PHYCOLOGY			English	Article						Arabian Sea; benthic dinoflagellates; Dinophyceae; Laciniporus arabicus; molecular phylogeny; morphology; Oman; Peridiniales; taxonomy	FRESH-WATER DINOFLAGELLATE; RDNA-BASED PHYLOGENY; BENTHIC DINOFLAGELLATE; EMENDED DESCRIPTION; MOLECULAR CHARACTERIZATION; TAXONOMIC REVISION; COOLIA-MALAYENSIS; KOREA MORPHOLOGY; COASTAL WATERS; JEJU ISLAND	A new thecate, photosynthetic, sand-dwelling marine dinoflagellate, Laciniporus arabicus gen. et sp. nov., is described from the subtidal sediments of the Omani coast in the Arabian Sea, northern Indian Ocean, based on detailed morphological and molecular data. Cells of L. arabicus are small (16.2-30.1 mu m long and 13.1-23.2 mu m wide), dorsoventrally compressed, with a small apical flap-shaped projection pointing to the left. The thecal plate pattern is distinguished by minute first precingular plate and sulcus, which extends into the epitheca, with large anterior and right sulcal plates. The Kofoidian thecal tabulation is Po, X, 4 ', 2a, 7 '', 6c, 6s, 5 ''', 2 ''''. Morphologically, the revealed plate pattern has an affinity to the Peridiniales, and LSU rDNA based phylogenetic analyses placed L. arabicus within the Thoracosphaeraceae, close to calcareous-cyst producing scrippsielloids, predatory pfiesteriaceans, and photosynthetic freshwater peridinioids Chimonodinium lomnickii and Apocalathium spp. However, the thecal plate arrangement of L. arabicus differs noticeably from any currently described dinoflagellates, and the species stands out from closely related taxa by extensive differences in physiology and ecology.	[Saburova, Maria] Kuwait Inst Sci Res, Ecosyst Based Management Marine Resources Program, Environm & Life Sci Res Ctr, POB 1638, Salmiya 22017, Kuwait; [Chomerat, Nicolas] IFREMER, LER BO, Stn Biol Marine, Pl Croix, F-29900 Concarneau, France	Kuwait Institute for Scientific Research; Ifremer	Saburova, M (通讯作者)，Kuwait Inst Sci Res, Ecosyst Based Management Marine Resources Program, Environm & Life Sci Res Ctr, POB 1638, Salmiya 22017, Kuwait.	msaburova@gmail.com	Saburova, Maria/JPK-3666-2023	Saburova, Maria/0000-0002-2204-2485	Foreign Fellow Scientist Program at the French Research Institute for Exploitation of the Sea (IFREMER, LER BO, Station de Biologie Marine, Concarneau, France)	Foreign Fellow Scientist Program at the French Research Institute for Exploitation of the Sea (IFREMER, LER BO, Station de Biologie Marine, Concarneau, France)	We highly appreciate Igor Polikarpov (Kuwait Institute for Scientific Research, Kuwait) valuable help with sampling and kind support during this work. We also thank Mikhail Chesalin (Fisheries Research Center, Salalah, Oman) for help in field sampling and hospitality in Salalah. The authors thank Gwenael Bilien (IFREMER, LER BO, Station de Biologie Marine, Concarneau, France) for her assistance with the molecular work, and Andrey Sazhin (P.P. Shirshov Institute of Oceanology, Moscow, Russia) for providing the optical facilities. We acknowledge the help of Ahlam S. Al-Kadi and Mohammed T. Rajab (Nanoscopy Science Center, Kuwait University, Kuwait) and Viktor Karlov (P.P. Shirshov Institute of Oceanology, Moscow, Russia) for their skilful technical assistance with SEM. Thanks to Jacob Larsen (IOC Science and Communication Centre on Harmful Algae, University of Copenhagen, Denmark) for his comments on an earlier version of the manuscript. We are grateful to anonymous reviewers for their detailed and constructive comments. 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Phycol.	FEB	2019	55	1					84	103		10.1111/jpy.12783	http://dx.doi.org/10.1111/jpy.12783			20	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	HM4PG	30179255	Green Published			2025-03-11	WOS:000459455700008
J	Liow, GR; Lau, WLS; Law, IK; Hii, KS; Noor, NM; Leaw, CP; Lim, PT				Liow, Guat Ru; Lau, Winnie Lik Sing; Law, Ing Kuo; Hii, Kieng Soon; Noor, Normawaty Mohammad; Leaw, Chui Pin; Lim, Po Teen			Phytoplankton community changes in Kuantan Port (Malaysia), with emphasis on the paralytic-shellfish toxin-producing dinoflagellate <i>Alexandrium tamiyavanichii</i>	REGIONAL STUDIES IN MARINE SCIENCE			English	Article						Alexandrium; Harmful algal bloom; Paralytic shellfish poisoning; qPCR; Saxitoxins	SETO INLAND SEA; COASTAL WATERS; LIFE-CYCLE; DINOPHYCEAE; IDENTIFICATION; COHORTICULA; ENCYSTMENT; EXCYSTMENT; DIVERSITY; DYNAMICS	The Kuantan Port (Pahang, Malaysia, South China Sea) is a multi-cargo port located on the east coast of Peninsular Malaysia. The port has served as an important seaway to major ports in Asia-Pacific regions. In November 2013 and August 2014, two incidents of paralytic shellfish poisoning (PSP) have been consecutively reported in the Port. In this study, a field investigation was undertaken in the Port from April 2015 to May 2016 as an effort to continuously monitor the occurrence of HAB species following the PSP episodes in the year 2013-2014. Phytoplankton and hydrographic samples were collected for quantitative and qualitative assessments in a monthly interval. To precisely quantify the PSP-toxins producing species Alexandrium tamiyavanichii, a real-time quantitative PCR (qPCR) assay was applied to detect the motile cells and cysts. The results revealed the presence of A. tamiyavanichii but with extremely low cell abundances (<0.1% of the total abundances). The species was found co-existed with other Alexandrium species. Alexandrium abundance was associated with salinity and nitrogen to phosphorus ratios but negatively correlated with PO4-P and NH4-N as revealed in the canonical correspondence analysis. Low cell abundances of diarrhetic-shellfish toxins producing dinoflagellates (Dinophysis spp.) and fish-killing species (Prorocentrum sigmoides, Akashiwo sanguinea, Noctiluca scintillans, Chattonella spp.) were also encountered in the port. The results of this study would provide useful baseline information for the assessment and management of ballast water in Malaysian ports and its territorial waters. (C) 2019 Elsevier B.V. All rights reserved.	[Liow, Guat Ru; Lau, Winnie Lik Sing; Law, Ing Kuo; Hii, Kieng Soon; Leaw, Chui Pin; Lim, Po Teen] Univ Malaya, Inst Ocean & Earth Sci, Bachok Marine Res Stn, Bachok 16310, Kelantan, Malaysia; [Noor, Normawaty Mohammad] Int Islamic Univ Malaysia, Kulliyyah Sci, Dept Marine Sci, Jalan Sultan Ahmad Shah, Kuantan 252, Pahang, Malaysia	Universiti Malaya; International Islamic University Malaysia	Leaw, CP; Lim, PT (通讯作者)，Univ Malaya, Inst Ocean & Earth Sci, Bachok Marine Res Stn, Bachok 16310, Kelantan, Malaysia.	cpleaw@um.edu.my; ptlim@um.edu.my	Hii, Kieng/R-2176-2017; Lim, Po Teen/C-9758-2013; Leaw, Chui Pin/F-5220-2012	Lim, Po Teen/0000-0003-2823-0564; Hii, Kieng Soon/0000-0001-6905-3045; Leaw, Chui Pin/0000-0003-3336-1438	Malaysian government through Ministry of Energy, Science, Technology, Environment and Climate Change, Sciencefund [04-01-03-SF1011]; Ministry of Education HiCoE Fund [IOES-2014C]; UM RU Fund [TU001-2018]; International Science and Technology Innovation Cooperation, MOST, China; MoE MyBrain Scholarship	Malaysian government through Ministry of Energy, Science, Technology, Environment and Climate Change, Sciencefund; Ministry of Education HiCoE Fund; UM RU Fund; International Science and Technology Innovation Cooperation, MOST, China; MoE MyBrain Scholarship	This work was funded by the Malaysian government through the Ministry of Energy, Science, Technology, Environment and Climate Change, Sciencefund [04-01-03-SF1011]; Ministry of Education HiCoE Fund [IOES-2014C]; UM RU Fund [TU001-2018]; International Science and Technology Innovation Cooperation, MOST, China [IF029-2018] to PT Lim. 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FEB	2019	26								100504	10.1016/j.rsma.2019.100504	http://dx.doi.org/10.1016/j.rsma.2019.100504			10	Ecology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	HN0EJ		Green Accepted			2025-03-11	WOS:000459857800004
J	Suzuki, Y; Suzuki, T; Awai, K; Shioi, Y				Suzuki, Yuya; Suzuki, Tomohiro; Awai, Koichiro; Shioi, Yuzo			Isolation and characterization of a tandem-repeated cysteine protease from the symbiotic dinoflagellate <i>Symbiodinium</i> sp. KB8	PLOS ONE			English	Article							CELL-DEATH	A cysteine protease belonging to peptidase C1A superfamily from the eukaryotic, symbiotic dinoflagellate, Symbiodinium sp. strain KB8, was characterized. The protease was purified to near homogeneity (566-fold) by (NH4)(2)SO4 fractionation, ultrafiltration, and column chromatography using a fluorescent peptide, butyloxycarbonyl-Val-Leu-Lys-4-methylcoumaryl-7-amide (Boc-VLK-MCA), as a substrate for assay purposes. The enzyme was termed VLKP (VLK protease), and its activity was strongly inhibited by cysteine protease inhibitors and activated by reducing agents. Based on the results for the amino acid sequence determined by liquid chromatography-coupled tandem mass spectrometry, a cDNA encoding VLKP was synthesized. VLKP was classified into the peptidase C1A superfamily of cysteine proteases (C1AP). The predicted amino acid sequence of VLKP indicated a tandem array of highly conserved precursors of C1AP with a molecular mass of approximately 71 kDa. The results of gel-filtration chromatography and SDS-PAGE suggested that VLKP exists as a monomer of 31-32 kDa, indicating that the tandem array is likely divided into two mass-equivalent halves that undergo equivalent posttranslational modifications. The VLKP precursor contains an inhibitor prodomain that might become activated after acidic autoprocessing at approximately pH 4. Both purified and recombinant VLKPs had a similar substrate specificity and kinetic parameters for common C1AP substrates. Most C1APs reside in acidic organelles such as the vacuole and lysosomes, and indeed VLKP was most active at pH 4.5. Since VLKP exhibited maximum activity during the late logarithmic growth phase, these attributes suggest that, VLKP is involved in the metabolism of proteins in acidic organelles.	[Suzuki, Yuya; Awai, Koichiro; Shioi, Yuzo] Shizuoka Univ, Grad Sch Sci, Shizuoka, Japan; [Suzuki, Tomohiro] Shizuoka Univ, Res Inst Green Sci & Technol, Shizuoka, Japan; [Awai, Koichiro] Shizuoka Univ, Elect Res Inst, Hamamatsu, Shizuoka, Japan; [Awai, Koichiro] JST, PRESTO, Kawaguchi, Saitama, Japan; [Suzuki, Tomohiro] Utsunomiya Univ, Ctr Biosci Res & Educ, Utsunomiya, Tochigi, Japan	Shizuoka University; Shizuoka University; Shizuoka University; Japan Science & Technology Agency (JST); Utsunomiya University	Awai, K (通讯作者)，Shizuoka Univ, Grad Sch Sci, Shizuoka, Japan.; Awai, K (通讯作者)，Shizuoka Univ, Elect Res Inst, Hamamatsu, Shizuoka, Japan.; Awai, K (通讯作者)，JST, PRESTO, Kawaguchi, Saitama, Japan.	awai.koichiro@shizuoka.ac.jp	Awai, Koichiro/B-5119-2010	Awai, Koichiro/0000-0002-1731-7499; Suzuki, Tomohiro/0000-0002-2444-5288	Precursory Research for Embryonic Science and Technology program of the Japanese Science and Technology Agency	Precursory Research for Embryonic Science and Technology program of the Japanese Science and Technology Agency	This work was supported in part by the Precursory Research for Embryonic Science and Technology program of the Japanese Science and Technology Agency to KA, and there was no additional external funding received for this study. The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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J	Morquecho, L				Morquecho, Lourdes			<i>Pyrodinium bahamense</i> One the Most Significant Harmful Dinoflagellate in Mexico	FRONTIERS IN MARINE SCIENCE			English	Review						Pyrodinium bahamense; Mexico; harmful blooms; saxitoxins; PSP	TODOS-SANTOS BAY; ALGAL BLOOMS; PACIFIC COAST; SUBTROPICAL LAGOON; CYST DISTRIBUTION; TROPICAL PACIFIC; RED TIDE; GULF; SEDIMENTS; PLATE	Pyrodinium bahamense produces saxitoxins and can cause paralytic shellfish poisoning (PSP). This species has caused more human illnesses and fatalities than any other toxic dinoflagellate in Mexico. The distribution of dinoflagellate cysts with their vegetative stage is broad, mainly along Mexican Pacific coasts from the central Gulf of California to Chiapas, as well as in the southern Gulf of Mexico and the Mexican Caribbean Sea on the Atlantic coast. In vitro germination of living cysts from the southern Gulf of California occurs under thermophilic (20-35 degrees C) and euryhaline (20-35 ups) conditions. Blooms occurred typically during summer rainy season (June through September), inside of restricted shallow lagoons surrounded by mangrove forests. The data obtained so far on P. bahamense spatial and population variability in Mexican Pacific and the Gulf of Mexico, suggest a seasonal and latitudinal pattern. Also, in these regions, the abundance, seasonality, and species distribution tend to decrease from tropical to subtropical areas. The local strain toxicity has only been corroborated in one isolate from the southern Gulf of California, which exhibited a high saxitoxin concentration of 95 pg STX eq cell(-1). PSP outbreaks linked with P. bahamense in the Gulf of Tehuantepec from 1989 to 2007, caused at least similar to 200 human cases, with 15 fatalities. This mini-review ends with a viewpoint of management and research strategies to better understand the factors that play essential roles in the bloom dynamics and toxicity of this species.	[Morquecho, Lourdes] Ctr Invest Biol Noroeste, La Paz, Mexico	Telefonica SA; CIBNOR - Centro de Investigaciones Biologicas del Noroeste	Morquecho, L (通讯作者)，Ctr Invest Biol Noroeste, La Paz, Mexico.	lamorquecho@cibnor.mx	Morquecho, Lourdes/JPY-0626-2023	Morquecho, Lourdes/0000-0003-2963-8836	CIBNOR project [20014]	CIBNOR project	This work was supported by the CIBNOR project 20014 (Coleccion de Dinoflagelados Marinos).	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Mar. Sci.	JAN 23	2019	6								1	10.3389/fmars.2019.00001	http://dx.doi.org/10.3389/fmars.2019.00001			8	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	LR6VW		gold			2025-03-11	WOS:000535831200001
S	Belmonte, G; Rubino, F		Alekseev, VR; PinelAlloul, B		Belmonte, Genuario; Rubino, Fernando			Cysts and Resting Eggs from Marine Zooplankton: Dimension of the Phenomenon, Physiology of Rest, and Ecological and Biogeographic Implications	DORMANCY IN AQUATIC ORGANISMS. THEORY, HUMAN USE AND MODELING	Monographiae Biologicae		English	Article; Book Chapter						Life cycles; Dormancy; Biogeography; Potential biodiversity; Resurrection ecology; Confined marine environments; Cyst banks; Zooplankton	LIFE-HISTORY TRAITS; BALTIC SEA-ICE; DIAPAUSE EGGS; EVOLUTIONARY CONSEQUENCES; SEASONAL FLUCTUATIONS; VERTICAL-DISTRIBUTION; DINOFLAGELLATE CYSTS; ACARTIIDAE CALANOIDA; MONOPOREIA-AFFINIS; THERMAIKOS GULF	Encystment is a common strategy adopted by coastal marine plankton species to avoid adverse conditions. Spiny cysts have been identified in marine sediments of more than 600 millions years ago, thus suggesting that this has been an original trait of metazoan life cycles. Protista, Chromista, and Metazoa share this trait which is not the result of a convergent evolution, but a plesiomorphy, probably dictated by low oxygen concentrations. During the evolution of life on the Earth, the morphology has been modified, and today some taxa show typical and recognizable patterns. The affirmation of parental cares (brood protection) is suspected to have provoked the disappearing of spiny covering of eggs and/or cysts. Cysts produced in the pelagos sink to the bottom sediments where their dormancy may extend for decades. In polar seas, cysts are suspected to be entrapped within sea ice and released with ice melting to refuel a new plankton community in the complex frame of the so-called resurrection ecology. Confined marine coastal areas accumulate cysts in sediments due to many drivers as (i) reduced water movement/hydrodynamics, (ii) concentration of cyst-producing species with high population densities, and (iii) absence and/or scarcity of possible cyst consumers in the benthos. The pelagic-benthic nexus, which affects both the sediments and the water column (and possibly sea ice), is still poorly understood. The presence of cysts in the life cycle is likely to have considerable consequences for the ecology of coastal plankton as well as the evolution and biogeography of species.	[Belmonte, Genuario] Univ Salento, Dept Biol & Environm Sci & Technol, Lecce, Italy; [Rubino, Fernando] CNR, Water Res Inst, Unit Talassog A Cerruti, Taranto, Italy	University of Salento; Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR)	Belmonte, G (通讯作者)，Univ Salento, Dept Biol & Environm Sci & Technol, Lecce, Italy.	genuario.belmonte@unisalento.it; rubino@irsa.cnr.it	BELMONTE, GENUARIO/AAG-4029-2020; Rubino, Fernando/GOP-0332-2022					Albertsson J, 2000, MAR BIOL, V136, P611, DOI 10.1007/s002270050721; Alekseev Victor R., 2007, Monographiae Biologicae, V84, P29; Alekseev VR, 1990, DIAPAUSA RAKOOBRAZHI; [Anonymous], 2009, PALYNOLOGY; [Anonymous], 1998, PHYSL ECOLOGY HARMFU; Bailey SA, 2003, LIMNOL OCEANOGR, V48, P1701, DOI 10.4319/lo.2003.48.4.1701; BAN S, 1994, HYDROBIOLOGIA, V293, P185, DOI 10.1007/BF00229940; Ban S, 1992, J CRUSTACEAN BIOL, V12, P361; Barnes R S K., 1999, An Introduction to Marine Ecology; Baumgartner MF, 2017, ANNU REV MAR SCI, V9, P387, DOI 10.1146/annurev-marine-010816-060505; Belmonte G, 1997, HYDROBIOLOGIA, V355, P159, DOI 10.1023/A:1003071205424; Belmonte G, 1997, CRUSTACEANA, V70, P114, DOI 10.1163/156854097X00401; Belmonte G, 1998, J MARINE SYST, V15, P35, DOI 10.1016/S0924-7963(97)00047-X; Belmonte G, 1998, J MARINE SYST, V15, P359, DOI 10.1016/S0924-7963(97)00087-0; Belmonte G, 1995, OLSEN INT S, P53; BELMONTE G, 1992, B ZOOL, V59, P363, DOI 10.1080/11250009209386694; Belmonte G, 1998, TRENDS ECOL EVOL, V13, P4, DOI 10.1016/S0169-5347(97)01234-2; Belmonte G, 2001, HYDROBIOLOGIA, V453, P171, DOI 10.1023/A:1013192623131; BELMONTE G, 1994, HYDROBIOLOGIA, V293, P131, DOI 10.1007/BF00229932; BELMONTE G, 1994, HYDROBIOLOGIA, V293, P9, DOI 10.1007/BF00229917; Belmonte G, 2018, EUR ZOOL J, V85, P274, DOI 10.1080/24750263.2018.1488005; Belmonte G, 2007, J PLANKTON RES, V29, pI39, DOI 10.1093/plankt/fbl064; Boero F, 2004, ECOL COMPLEX, V1, P101; Boero F, 1996, TRENDS ECOL EVOL, V11, P177, DOI 10.1016/0169-5347(96)20007-2; BOERO F, 1994, MAR ECOL-P S Z N I, V15, P3, DOI 10.1111/j.1439-0485.1994.tb00038.x; Bohonak AJ, 2006, ARCH HYDROBIOL, V167, P183, DOI 10.1127/0003-9136/2006/0167-0183; Braiko VD, 1966, DOKL AKAD NAUK, V170, P681; Brierley AS, 2002, ADV MAR BIOL, V43, P171, DOI 10.1016/S0065-2881(02)43005-2; BRYLINSKI J M, 1981, Journal of Plankton Research, V3, P255, DOI 10.1093/plankt/3.2.255; BUCK KR, 1992, J PHYCOL, V28, P15, DOI 10.1111/j.0022-3646.1992.00015.x; Caceres CE, 2003, ECOLOGY, V84, P1189, DOI 10.1890/0012-9658(2003)084[1189:HLTRTE]2.0.CO;2; CARBONE C, 2019, MUSEOL SCI MEM   AUG, P57; CARLTON JT, 1993, SCIENCE, V261, P78, DOI 10.1126/science.261.5117.78; CHESSON PL, 1981, AM NAT, V117, P923, DOI 10.1086/283778; Clegg JS, 1997, J EXP BIOL, V200, P467; COHEN D, 1966, J THEOR BIOL, V12, P119, DOI 10.1016/0022-5193(66)90188-3; Cohen PA, 2009, P NATL ACAD SCI USA, V106, P6519, DOI 10.1073/pnas.0902322106; Dahms HU, 2006, ESTUAR COAST SHELF S, V67, P562, DOI 10.1016/j.ecss.2005.12.011; DAHMS HU, 1995, HYDROBIOLOGIA, V306, P199, DOI 10.1007/BF00017691; Dieffenbach H., 2007, DIAPAUSE AQUATIC INV, P11; Drillet G., 2014, J. 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Biol.		2019	92						71	94		10.1007/978-3-030-21213-1_5	http://dx.doi.org/10.1007/978-3-030-21213-1_5	10.1007/978-3-030-21213-1		24	Marine & Freshwater Biology	Book Citation Index– Science (BKCI-S)	Marine & Freshwater Biology	BP4KS					2025-03-11	WOS:000553031200006
S	Belmonte, G; Rubino, F		Hawkins, SJ; Allcock, AL; Bates, AE; Firth, LB; Smith, IP; Swearer, SE; Todd, PA		Belmonte, Genuario; Rubino, Fernando			RESTING CYSTS FROM COASTAL MARINE PLANKTON	OCEANOGRAPHY AND MARINE BIOLOGY: AN ANNUAL REVIEW, VOL 57	Oceanography and Marine Biology		English	Article; Book Chapter							SP-NOV DINOPHYCEAE; DIAPAUSE EGG-PRODUCTION; CALANOID COPEPOD EGGS; SCRIPPSIELLA-TROCHOIDEA DINOPHYCEAE; MOTILE STAGE RELATIONSHIPS; RED-TIDE DINOFLAGELLATE; ACARTIA-TONSA DANA; DIATOM CHAETOCEROS-PSEUDOCURVISETUS; GYRODINIUM-INSTRIATUM FREUDENTHAL; ALEXANDRIUM-TAMARENSE DINOPHYCEAE	Coastal plankton show fluctuations in abundance and species composition. Resting stage (cyst) production is a common strategy adopted by hundreds of plankton species to ensure reproduction and to avoid adverse conditions. During the resting period, these species are normally absent from the water column, and cysts produced in the plankton accumulate in the sediment where they wait for the return of suitable conditions. A portion of the cyst bank does not hatch, instead undergoing a dormancy that may extend for decades. Confined coastal areas accumulate cysts in sediment due to one or more possibilities, including reduced water movement/hydrodynamics, high population density, abundance of cyst-producing species, and the absence or scarcity of possible cyst consumers in the benthos. The pelagic-benthic nexus, which affects both the sediment and the water column (and possibly sea ice) is still poorly understood. In fact, the presence of cysts in the life cycle of organisms is likely to have considerable consequences for the ecology of coastal plankton, as well as the evolution and biogeography of species. This review aims to depict the presence (and even abundance) of resting stages in marine environments and their impact on ecosystem functioning. The review starts with a description of encysted resting stages in all marine planktonic taxa, listing a total of 501 species with known cysts, and methods and tools for their collection and study. The physiology and timing of the rest period is then described for various taxa, followed by a discussion of the evolutionary implications of resting. The presence of encysted stages in different realms and phyla of plankton suggests an ancient origin and a successive diversification of morphologies that, today, roughly characterise each taxa. Ecological and biogeographical implications stem from this general framework and support the hypothesis of seasonal occurrences of planktonic life in ecosystems where productivity is suspended for a long time (e.g. in polar seas). The potential to suspend or resume life has implications for human activities, such as the risk of translocations through ship ballast water and contamination of water and seafood with toxins but also the benefit of cysts for the production of aquaculture feed. The review concludes with perspectives on present knowledge and outstanding questions to address in future studies.	[Belmonte, Genuario] Univ Salento, Dept Biol & Environm Sci & Technol, I-73100 Lecce, Italy; [Rubino, Fernando] CNR, Water Res Inst, Unit Talassog A Cerruti, Via Roma 3, I-74123 Taranto, Italy	University of Salento; Consiglio Nazionale delle Ricerche (CNR); Istituto di Ricerca sulle Acque (IRSA-CNR)	Belmonte, G (通讯作者)，Univ Salento, Dept Biol & Environm Sci & Technol, I-73100 Lecce, Italy.	genuario.belmonte@unisalento.it	BELMONTE, GENUARIO/AAG-4029-2020; Rubino, Fernando/GOP-0332-2022					Adachi M, 1999, MAR ECOL PROG SER, V191, P175, DOI 10.3354/meps191175; Agatha S, 2005, EUR J PROTISTOL, V41, P65, DOI 10.1016/j.ejop.2004.09.005; Agatha S., 2005, EUROPEAN J PROTISTOL, V41, P65; AKSELMAN R, 1990, MAR MICROPALEONTOL, V16, P169, DOI 10.1016/0377-8398(90)90002-4; Albertsson J, 2000, MAR BIOL, V136, P611, DOI 10.1007/s002270050721; Alekseev Victor R., 2007, Monographiae Biologicae, V84, P29; Alekseev VR, 1990, DIAPAUSA RAKOOBRAZHI; ANDERSON DM, 1985, LIMNOL OCEANOGR, V30, P1000, DOI 10.4319/lo.1985.30.5.1000; 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B	Gollasch, S; David, M		Sheppard, C		Gollasch, Stephan; David, Matej			Ballast Water: Problems and Management	WORLD SEAS: AN ENVIRONMENTAL EVALUATION, VOL III: ECOLOGICAL ISSUES AND ENVIRONMENTAL IMPACTS, 2ND EDITION			English	Article; Book Chapter							RISK-ASSESSMENT; DINOFLAGELLATE CYSTS; BIOLOGICAL INVASIONS; SPECIES INTRODUCTIONS; TANK SEDIMENTS; SHIPS; EXCHANGE; TRANSPORT; ORGANISMS; OCEAN		[Gollasch, Stephan] GoConsult, Grosse Brunnenstr, Hamburg, Germany; [David, Matej] Dr Matej David Consult Doo, Korte 13e, Izola 6310, Slovenia; [David, Matej] Univ Rijeka, Fac Maritime Studies, Rijeka, Croatia	University of Rijeka	Gollasch, S (通讯作者)，GoConsult, Grosse Brunnenstr, Hamburg, Germany.		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J	Lee, SP; Jeong, HJ; Kim, SJ; Ha Lee, K; Jang, SH				Lee, Sung Peon; Jeong, Hae Jin; Kim, So Jin; Ha Lee, Kyung; Jang, Se Hyeon			<i>Scrippsiella masanensis sp. nov</i>. (Thoracosphaerales, Dinophyceae), a phototrophic dinoflagellate from the coastal waters of southern Korea	PHYCOLOGIA			English	Article						ITS; LSU; Morphology; Noncalcareous; SEM; Taxonomy	CYST-THECA RELATIONSHIP; HARMFUL ALGAL BLOOMS; TAXONOMIC CLARIFICATION; SPINIFERA PERIDINIALES; TROCHOIDEA; ULTRASTRUCTURE; IDENTIFICATION; PHYLOGENY; GEN.; CALCIODINELLOIDEAE	A phototrophic dinoflagellate belonging to the genus Scrippsiella was isolated from a water sample collected from Masan Bay, Korea. Using a clonal culture of this dinoflagellate, its morphology was analysed with light, scanning and transmission electron microscopy and small subunit (SSU), large subunit (LSU), and internal transcribed spacer ribosomal DNA (ITS rDNA) sequences were studied. The dinoflagellate plate formula was Po, x, 4', 3a, 7 '', 6c (5c + t), 5s, 5''', and 2 '''', consistent with Scrippsiella. The dinoflagellate had a rounded epitheca, unlike most Scrippsiella species, which have a conical epitheca. Furthermore, it had a narrow, symmetrical, and pentagonal 1' plate, unlike other Scrippsiella species. In addition, it had three intercalary plates of different sizes. This species had noncalcareous cysts, unlike most Scrippsiella species, which have calcareous cysts. The LSU rDNA sequence of the dinoflagellate was about 2% different from Scrippsiella enormis, the closest Scrippsiella species, and the ITS rDNA sequence was about 8% different from S. enormis. The sequence was identical to an unidentified Scrippsiella strain from Chinese waters (SSND14) and 0.55% different from an unidentified Scrippsiella strain from Norwegian waters (GeoB 277). On the basis of its unique morphological and molecular features, this species was named Scrippsiella masanensis sp. nov.	[Lee, Sung Peon; Jeong, Hae Jin; Kim, So Jin; Ha Lee, Kyung; Jang, Se Hyeon] Seoul Natl Univ, Coll Nat Sci, Sch Earth & Environm Sci, Seoul 08826, South Korea; [Jeong, Hae Jin] Adv Inst Convergence Technol, Suwon 16229, South Korea	Seoul National University (SNU)	Jeong, HJ (通讯作者)，Seoul Natl Univ, Coll Nat Sci, Sch Earth & Environm Sci, Seoul 08826, South Korea.; Jeong, HJ (通讯作者)，Adv Inst Convergence Technol, Suwon 16229, South Korea.	hjjeong@snu.ac.kr	Jeong, hae/B-8908-2009; Jang, Hyeon/AAO-6009-2020	Jeong, Hae Jin/0000-0003-3310-4335	Useful Dinoflagellate Programme of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF); National Research Foundation (NRF) - Ministry of Science and ICT [NRF-2015M1A5A1041806, NRF-2017R1E1A1A01074419]	Useful Dinoflagellate Programme of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF)(Korea Institute of Marine Science & Technology Promotion (KIMST)Ministry of Oceans & Fisheries (MOF), Republic of Korea); National Research Foundation (NRF) - Ministry of Science and ICT(National Research Foundation of Korea)	This research was supported by the Useful Dinoflagellate Programme of the Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) and Management of Marine Organisms Causing Ecological Disturbance and Harmful Effect Programme of KIMST and the National Research Foundation (NRF) funded by the Ministry of Science and ICT (NRF-2015M1A5A1041806; NRF-2017R1E1A1A01074419) award to HJJ.	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J	Li, Z; Shin, H				Li, Zhun; Shin, HyeonHo			Morphology, phylogeny and life cycle of <i>Fragilidium mexicanum</i> Balech (Gonyaulacales, Dinophyceae)	PHYCOLOGIA			English	Article						Dinoflagellate; Life history; Molecular; Pellicle cyst; Resting cyst	SP-NOV DINOPHYCEAE; MOLECULAR PHYLOGENY; RESTING CYST; DINOFLAGELLATE; HISTORY; DUPLOCAMPANAEFORME; STRATEGIES; SEDIMENTS; TOXICITY; LIGHT	We describe the life cycle, morphology and molecular phylogenetic position of Fragilidium mexicanum, based on vegetative cells established by incubation of resting cysts isolated from sediment trap samples collected at Jinhae-Masan Bay, Korea. Resting cysts of F. mexicanum were spherical and surrounded by transparent mucilage, similar to other Fragilidium species. Germinated vegetative cells were identified as F. mexicanum based on thecal morphology and tabulation; the plate formula was Po, Pc, 4', 8 '',10c, 6s, 7''', 1p, 2 ''''. Molecular phylogenetic analyses of sequence data for small and large subunits of ribosomal DNA genes revealed that Fragilidium species were monophyletic with high supports and that F. mexicanum formed a separate Glade with Fragilidium sp. (JQ317599). Time-lapse photography was used to clarify the life history. Isolated resting cysts germinated into an unarmoured planomeiocyte and directly formed the pellicle cyst, with an armoured planomeiocyte emerging from the pellicle cyst. The armoured planomeiocyte underwent ecdysis and formed a coccoid meiocyte, with a two-celled chain emerging from the coccoid meiocyte. Like the armoured planomeicyte, vegetative cells also underwent ecdysis and then divided into two daughter cells that eventually emerged as motile vegetative cells. The life cycle of F. mexicanum has nonmotile life history stages that regularly alternate with motile stages. The nonmotile stage consists of five forms: resting cyst, pellicle cyst, asexual coccoid stage, coccoid meiocyte, and zygote. The motile stage also has five forms: unarmoured and armoured planomeiocyte, planozygote, gamete and vegetative cell.	[Li, Zhun; Shin, HyeonHo] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea	Korea Institute of Ocean Science & Technology (KIOST)	Shin, H (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.	shh961121@kiost.ac	LI, ZHUN/GLT-3478-2022	LI, ZHUN/0000-0001-8961-9966; Shin, Hyeon Ho/0000-0002-9711-6717	project titled 'Research center for fishery resource management based on the information and communication technology (ICT)'; Marine Biotechnology Programme of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF) [20170431]; KIOST project [PE99721]	project titled 'Research center for fishery resource management based on the information and communication technology (ICT)'; Marine Biotechnology Programme of the Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF); KIOST project	This research was supported by a part of the project titled 'Research center for fishery resource management based on the information and communication technology (ICT)' and the Marine Biotechnology Programme of the Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF; No. 20170431), and KIOST project (PE99721).	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J	Yurur, EE				Yurur, Emine Erdem			DINOFLAGELLATE CYST ASSEMBLAGES IN THE SURFACE SEDIMENTS FROM ISKENDERUN BAY, NORTHEASTERN MEDITERRANEAN	FRESENIUS ENVIRONMENTAL BULLETIN			English	Article						Dinoflagellate; cyst; sediment; Iskenderun Bay; Mediterranean	RECENT MARINE-SEDIMENTS; IZMIR BAY; COASTAL WATERS; AEGEAN SEA; PHYTOPLANKTON ASSEMBLAGES; ZOOPLANKTON ABUNDANCE; ECOSYSTEM; BIOMASS; GULF; EUTROPHICATION	To document and understand dinoflagellate cyst assemblages, 6 surface sediment samples were collected from Iskenderun Bay, in the northeastern Mediterranean. A total of 28 cyst types were identified and the cyst concentration was attained as 144 cysts g-' dry weight sediment in the bay. The cyst concentration was low when compared to other areas in the Mediterranean. Lingulodinium machaerophorum, SpiMferites bulloideus, and Brigantedinium spp. were the most abundant cysts in the sampling points. Three of the stations had a sandy sediment grain size, while the other stations had a muddy (silt + clay) sediment distribution. Only the clay exhibited a significantly strong positive correlation with the total and heterotrophic dinoflagellate cyst concentrations, whereas no other strong correlation was found between the sediment grain size and dinoflagellate cysts. The present study provides the first modern dinoflagellate cyst records from the surface sediments of Iskenderun Bay, in the northeastern Mediterranean.	[Yurur, Emine Erdem] Manisa Celal Bayar Univ, Biol Dept, Fac Sci & Arts, Martyr Ilhan Varank Campus, TR-45140 Manisa, Turkey	Celal Bayar University	Yurur, EE (通讯作者)，Manisa Celal Bayar Univ, Biol Dept, Fac Sci & Arts, Martyr Ilhan Varank Campus, TR-45140 Manisa, Turkey.	ehyurur@gmail.com.tr						Aktan Y, 2011, ESTUAR COAST SHELF S, V91, P551, DOI 10.1016/j.ecss.2010.12.010; Anderson D.M., 2003, Monographs on Oceanographic Methodology, V11, P165; Aydin H, 2015, TURK J FISH AQUAT SC, V15, P543, DOI 10.4194/1303-2712-v15_2_42; Aydin H, 2015, FRESEN ENVIRON BULL, V24, P4789; Aydin H, 2015, MAR POLLUT BULL, V94, P144, DOI 10.1016/j.marpolbul.2015.02.038; Aydin H, 2014, FRESEN ENVIRON BULL, V23, P1795; Aydin H, 2014, J ENVIRON BIOL, V35, P413; Aydin H, 2011, MAR MICROPALEONTOL, V80, P44, DOI 10.1016/j.marmicro.2011.03.004; Balkis N, 2016, PHYCOLOGIA, V55, P187, DOI 10.2216/15-93.1; Dale B, 2001, SCI TOTAL ENVIRON, V264, P235, DOI 10.1016/S0048-9697(00)00719-1; Dale B, 2001, SCI MAR, V65, P257, DOI 10.3989/scimar.2001.65s2257; Elshanawany R, 2010, PALYNOLOGY, V34, P233, DOI 10.1080/01916121003711665; Ferrante M., 2013, EuroMediterranean Biomed. 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Bull.		2019	28	2A					1356	1365						10	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	HO9GW					2025-03-11	WOS:000461270800039
J	Gao, H; You, SP; Lei, XD; Xiao, YP; Gu, HF; Tong, MM				Gao, Han; You, Shengpao; Lei, Xiangdong; Xiao, Yunpu; Gu, Haifeng; Tong, Mengmeng			The impact of biotic and abiotic factors on the distribution of surface sediment dinoflagellate cyst assemblages on the Nanji Island in the East China Sea	ACTA OCEANOLOGICA SINICA			English	Article; Proceedings Paper	10th WESTPAC International Scientific Conference	APR 17-20, 2017	Qingdao, PEOPLES R CHINA	UNESCO, State Ocean Adm China & Intergovernmental Oceanog Commiss, IOC Sub commiss W Pacific, First Inst Oceanog China		dinoflagellate cyst; Nanji Island; nutrients; harmful algal blooms	RESTING CYSTS; ALEXANDRIUM-CATENELLA; NORTH-ATLANTIC; TOKYO-BAY; SCRIPPSIELLA; DYNAMICS; BLOOM; GULF; PRODUCTIVITY; MORPHOLOGY	The dinoflagellate cyst assemblages on the Nanji Island in the East China Sea, are documented at the first time to construct a quantitative overview of the cyst bank from 2014 to 2015. Thirty-four morphotypes from six groups are identified and quantified at eight sampling sites around the island, including a high proportion of potentially toxigenic species (14%). Autotrophic dinocysts constitute 74% of the total cyst counts, which is relatively low (two to thirty-three per millilitre sediment) compared with previous studies in adjacent areas. Scrippsiella trochoidea and Protoperidinium avellana are the most abundant autotrophic and heterotrophic species, respectively. A multivariate analysis is performed to assess associations between dinocysts and abiotic or biotic variables. Differentiation among seasons is evident in the detrended correspondence analysis (DCA) ordination plot, while a spatial pattern is not clearly revealed despite heterogeneity of the hydrodynamic conditions between sampling sites. Soluble reactive phosphate, the ratio of nitrogen to phosphorus concentrations and Karenia mikimotoi bloom are the three factors significantly (P<0.05) related to surface sediment cyst assemblage defined by the canonical correspondence analysis (CCA), highlighting the importance of nutrient regime to a dinocyst distribution in this area. Although attempts to address the origin of HAB events in recent years using seed banks have failed, knowledge can be valuable for further investigation of dinocyst dynamics and potential toxin threats on the Nanji Island.	[Gao, Han; Xiao, Yunpu; Tong, Mengmeng] Zhejiang Univ, Ocean Coll, Zhoushan 316000, Peoples R China; [You, Shengpao; Lei, Xiangdong] Minist Nat Resources, Nanji Marine Environm Monitoring Stn, Pingyang 325400, Peoples R China; [Xiao, Yunpu] Pingyang Cty Marine & Fisheries Bur, Pingyang 325400, Peoples R China; [Gu, Haifeng] Minist Nat Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China	Zhejiang University; Ministry of Natural Resources of the People's Republic of China; Ministry of Natural Resources of the People's Republic of China; Third Institute of Oceanography, Ministry of Natural Resources	Tong, MM (通讯作者)，Zhejiang Univ, Ocean Coll, Zhoushan 316000, Peoples R China.	mengmengtong@zju.edu.cn	Gu, Haifeng/ADN-4528-2022	Gu, Haifeng/0000-0002-2350-9171	Zhejiang Public Welfare Technology Research and Social Development Project of 2013 of China [2013C33081, 2013C32040]; National Natural Science Foundation of China [41306095]; Doctoral Fund of Ministry of Education of China [J20130101]	Zhejiang Public Welfare Technology Research and Social Development Project of 2013 of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Doctoral Fund of Ministry of Education of China(Ministry of Education, China)	Foundation item: The Zhejiang Public Welfare Technology Research and Social Development Project of 2013 of China under contract Nos 2013C33081 and 2013C32040; the National Natural Science Foundation of China under contract No. 41306095; the Doctoral Fund of Ministry of Education of China under contract No. J20130101.	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Sin.	JAN	2019	38	1					160	171		10.1007/s13131-019-1375-9	http://dx.doi.org/10.1007/s13131-019-1375-9			12	Oceanography	Science Citation Index Expanded (SCI-EXPANDED); Conference Proceedings Citation Index - Science (CPCI-S)	Oceanography	HM4UA					2025-03-11	WOS:000459469100021
S	Hegseth, EN; Assmy, P; Wiktor, JM; Wiktor, J; Kristiansen, S; Leu, E; Tverberg, V; Gabrielsen, TM; Skogseth, R; Cottier, F		Hop, H; Wiencke, C		Hegseth, Else N.; Assmy, Philipp; Wiktor, Jozef M.; Wiktor, Jozef, Jr.; Kristiansen, Svein; Leu, Eva; Tverberg, Vigdis; Gabrielsen, Tove M.; Skogseth, Ragnheid; Cottier, Finlo			Phytoplankton Seasonal Dynamics in Kongsfjorden, Svalbard and the Adjacent Shelf	ECOSYSTEM OF KONGSFJORDEN, SVALBARD	Advances in Polar Ecology		English	Article; Book Chapter						Arctic; Kongsfjorden; Phytoplankton; Svalbard; Time-series	ARCTIC FJORD KONGSFJORDEN; MARINE MICROBIAL EUKARYOTES; ATLANTIC WATER INFLOW; SPRING BLOOM DYNAMICS; MARGINAL ICE-ZONE; ZOOPLANKTON COMMUNITY; PHAEOCYSTIS-POUCHETII; PHYSICAL-ENVIRONMENT; PARTICULATE MATTER; WEST SPITSBERGEN	Phytoplankton phenology is a key driver of biological and chemical processes in marine ecosystems because it directly affects cycling of nutrients, the strength of the biological carbon pump, and energy transfer to higher tropic levels. However, phytoplankton time-series from the Arctic are scant, thus limiting our ability to link phytoplankton phenology to environmental variability. Kongsfjorden on the west coast of Spitsbergen is an established coastal monitoring site at the entrance to the Arctic Ocean. In this review we have compiled previously published phytoplankton investigations, chlorophyll fluorescence time-series data and unpublished phytoplankton data covering the years 2002-2014 from Kongsfjorden and the shelf outside the fjord to elaborate the most pertinent environmental factors responsible for the seasonal and inter-annual variability in phytoplankton bloom dynamics, biomass and species composition. In general, phytoplankton dynamics in Kongsfjorden follow the classic spring-bloom paradigm, with the main biomass peak in April-May dominated by spore-forming diatom species and the colony-forming haptophyte Phaeocystis pouchetii, followed by a diverse, but low biomass community characterised by dinoflagellates and small flagellates and their protozoan grazers during summer. Despite this general trend, phytoplankton phenology is subject to large inter-annual variability with no clear long-term trend. This variability can be mainly attributed to variability in the magnitude and depth of Atlantic Water (AW) inflow, sea ice cover and glacier melt-water discharge. We have shown the impact of environmental variability on phytoplankton phenology, but high-resolution monitoring of annual cycles over many years is required to resolve the ephemeral variations of phytoplankton populations in space and time against the backdrop of climate change.	[Hegseth, Else N.; Kristiansen, Svein; Cottier, Finlo] UiT Arctic Univ Norway, Fac Biosci Fisheries & Econ, Dept Arctic & Marine Biol, Tromso, Norway; [Assmy, Philipp] Norwegian Polar Res Inst, Fram Ctr, Tromso, Norway; [Wiktor, Jozef M.; Wiktor, Jozef, Jr.] Polish Acad Sci, Inst Oceanol, Sopot, Poland; [Leu, Eva] Akvaplan Niva AS, Fram Ctr, Tromso, Norway; [Tverberg, Vigdis] Nord Univ, Fac Biosci & Aquaculture, Bodo, Norway; [Gabrielsen, Tove M.; Skogseth, Ragnheid] Univ Ctr Svalbard, Longyearbyen, Norway; [Cottier, Finlo] Scottish Assoc Marine Sci, Scottish Oceans Inst, Oban, Argyll, Scotland	UiT The Arctic University of Tromso; Norwegian Polar Institute; Polish Academy of Sciences; Institute of Oceanology of the Polish Academy of Sciences; Akvaplan-niva; Nord University; University Centre Svalbard (UNIS); University of the Highlands & Islands	Hegseth, EN (通讯作者)，UiT Arctic Univ Norway, Fac Biosci Fisheries & Econ, Dept Arctic & Marine Biol, Tromso, Norway.	else.hegseth@uit.no	Tverberg, Vigdis/AAC-8801-2021; 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J	Deng, YY; Hu, ZX; Chai, ZY; Tang, YZ				Deng, Yunyan; Hu, Zhangxi; Chai, Zhaoyang; Tang, Ying Zhong			Molecular cloning of heat shock protein 60 (Hsp60) and 10 (Hsp10) genes from the cosmopolitan and harmful dinoflagellate <i>Scrippsiella trochoidea</i> and their differential transcriptions responding to temperature stress and alteration of life cycle	MARINE BIOLOGY			English	Article							HEAT-SHOCK PROTEINS; RED TIDE DINOFLAGELLATE; DROSOPHILA-MELANOGASTER; EXPRESSION ANALYSIS; AKASHIWO-SANGUINEA; HSP70 EXPRESSION; THERMAL-STRESS; BALLAST WATER; ALGAL BLOOMS; CHAPERONIN	Heat shock protein 60 (Hsp60) and Hsp10 are two chaperones important to both stress responses and cellular metabolisms in most organisms. In this study, the cosmopolitan Scrippsiella trochoidea was used as a model of HAB-forming dinoflagellates to explore the possible functional roles of Hsp60 and Hsp10 in the adaptation of dinoflagellates to temperature stress and life cycle transition. The full-length cDNAs of a Hsp60 and a Hsp10 gene from S. trochoidea (StHsp60 and StHsp10) were obtained via rapid amplification of cDNA ends (RACE) and their deduced amino acid sequences both included family-characteristic conservative structures and motifs, indicating a conserved function for both among different taxa. Real-time qPCR revealed that StHsp60 and StHsp10 exhibited highly similar mRNA accumulation patterns in response to temperature stresses. Their mRNA amounts, compared to that at 20 degrees C (control), were rapidly up-regulated upon exposure to both lower (15 degrees C, 10 degrees C, 5 degrees C) and higher (25 degrees C, 30 degrees C) temperatures and showed a clear time-dependent manner, suggesting a possible involvement of StHsp60 and StHsp10 in the urgent adaptation of S. trochoidea to drastic temperature stress. Furthermore, significantly elevated mRNA levels of both genes were detected in resting cysts (newly formed and that maintained in dormancy for different durations) relative to that in vegetative cells, suggesting that higher levels of StHsp60 and StHsp10 are demanded by S. trochoidea resting cysts. The results of this work, as the first investigation to characterize Hsp60 and Hsp10 genes from dinoflagellates, enrich the knowledge about Hsps and lay an important foundation for further probing their functions in dinoflagellate resting cysts.	[Deng, Yunyan; Hu, Zhangxi; Chai, Zhaoyang; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China.; Tang, YZ (通讯作者)，Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023; Chai, Zhaoyang/F-7485-2017	Deng, Yunyan/0000-0001-5967-3611	National Science Foundation of China [41476142, 41506143, 61533011, U1301235]; NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology [LMEES-CTSP-2018-1]	National Science Foundation of China(National Natural Science Foundation of China (NSFC)); NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology	The authors acknowledge financial support from the National Science Foundation of China (Grant No. 41606126), the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences (Grant No. U1606404), National Science Foundation of China (Grant Nos. 41476142, 41506143, 61533011, and U1301235), and Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology (Grant No. LMEES-CTSP-2018-1).	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Biol.	JAN	2019	166	1							7	10.1007/s00227-018-3455-3	http://dx.doi.org/10.1007/s00227-018-3455-3			14	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	HE1PU					2025-03-11	WOS:000453045700001
J	Shin, HH; Li, Z; Lim, D; Lee, KW; Seo, MH; Lim, WA				Shin, Hyeon Ho; Li, Zhun; Lim, Dhongil; Lee, Kyun-Woo; Seo, Min Ho; Lim, Weol Ae			Seasonal production of dinoflagellate cysts in relation to environmental characteristics ih jiiihae-Masan Bay, Korea: One-year sedimerit trap observation	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Scrippsiella; Spiniferites; Alexandrium; Phytoplankton; Summer; Late autumn	SCRIPPSIELLA-TROCHOIDEA CYSTS; ALEXANDRIUM-FUNDYENSE; POPULATION-DYNAMICS; JINHAE BAY; EUTROPHICATION; DINOPHYCEAE; INDICATORS; GROWTH; VIABILITY; COMMUNITY	To investigate dinoflagellate cyst production and seasonality in relation to major environmental factors, such as water temperature, salinity, chlorophyll-a (chl-a) and dissolved nutrients, and to propose dinoflagellate cysts as possible biological indicators for the reconstruction of past environmental conditions, a sediment trap study was conducted for one year, from March 2011 to February 2012, in Jinhae-Masan Bay, Korea. Marked increases in dinoflagellate cyst production were documented in Jinhae-Masna Bay during two distinct seasons (summer and late autumn) characterized by different environmental conditions. Summer (July and August) was characterized by relatively high water temperature, dissolved inorganic nitrogen (DIN), and chl-a concentrations and low salinity, whereas late autumn (November and December) exhibited high dissolved inorganic phosphorus, low water temperature and high salinity, compared to those of the summer. Fourteen dinoflagellate cyst taxa were identified. These assemblages were dominated by Brigantedinium species (round brown cyst), cysts of Scrippsiella species, Spiniferites species and cysts of Alexandrium species (ellipsoidal cyst). The total flux of dinoflagellate cysts ranged from 781 cysts m(-2) day(-1) to 5602 cysts m(-2) day(-1), and the production of autotrophic dinoflagellate cysts was mainly restricted to the wannest months (July-September) and autumn. Multivariable analysis revealed that the production of major dinoflagellate cysts, excluding those of Brigantediniunt species, can be enhanced by environmental conditions during summer in Jinhae-Masan Bay. In particular, the increased production of cysts of Scrippsiella species was related to increased water temperature, and the increased production of Spiniferites species was associated with lower salinity. Two peaks in cyst production of Alexandrium species in August and November corresponded with significant increases in DIN and DIP; however, no significant relationship was found between the production of Brigantedinizun species and environmental factors in Jinhae-Masan Bay. These results suggest that the cysts of Scrippsiella species, Spiniferites species and cysts of Alexandrium species present in sediment samples from Jinhae-Masan Bay can be used as biological indicators to reconstruct past environmental conditions involving relatively high water temperature, low salinity and enhanced nutrient level.	[Shin, Hyeon Ho; Li, Zhun; Lim, Dhongil] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea; [Lee, Kyun-Woo] Korea Inst Ocean Sci & Technol, Marine Ecosyst & Biol Res Ctr, Ansan 425600, South Korea; [Seo, Min Ho] Marine Ecol Res Ctr, Yeosu 59697, South Korea; [Lim, Weol Ae] Natl Inst Fisheries Sci, Busan 619705, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST); National Institute of Fisheries Science	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea.	shh961121@kiost.ac.kr	LI, ZHUN/GLT-3478-2022; Lim, Dhongil/ACH-3964-2022	Shin, Hyeon Ho/0000-0002-9711-6717; Lim, Dhongil/0000-0002-0832-2907; LI, ZHUN/0000-0001-8961-9966	Marine Biotechnology Program - Ministry of Ocean and Fisheries of the Korean government; NIFS; KIOST [PE99623]	Marine Biotechnology Program - Ministry of Ocean and Fisheries of the Korean government; NIFS(National Institutes of Natural Sciences (NINS) - JapanNational Institute for Fusion Science (NIFS) - Japan); KIOST	This work was supported by grants from the Marine Biotechnology Program funded by the Ministry of Ocean and Fisheries of the Korean government, and by NIFS and KIOST projects (PE99623).	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Coast. Shelf Sci.	DEC 31	2018	215						83	93		10.1016/j.ecss.2018.09.031	http://dx.doi.org/10.1016/j.ecss.2018.09.031			11	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	HE0FV					2025-03-11	WOS:000452943100009
J	Marret, F; Mertens, KN				Marret, Fabienne; Mertens, Kenneth Neil			Additional observations of <i>Spiniferites alaskensis</i> from topotype material	PALYNOLOGY			English	Article; Proceedings Paper	Workshop on Gonyaulax Diesing 1866	JUL 06-09, 2015	Flanders Marine Inst, Oostend, BELGIUM	Res Unit Palaeontol	Flanders Marine Inst	Gulf of Alaska; chorate; Spiniferites; processes; Eemian; ODP	DINOFLAGELLATE CYSTS	Here we present new observations of Spiniferites alaskensis, a relatively rare species described from the Eemian of the Gulf of Alaska. We show that the species shows a gonyaulacacean tabulation: Po, 4 ', 6 '', 6c,? s, 6 ''', 1p, 1 ''''. The surface is finely granulate to scabrate. The species bears characteristic processes: these are exclusively gonal, membranous, perforated and end distally in platforms with stumpy ends. We provide more detail as how this species compares to closely related species belonging to the genus Spiniferites.	[Marret, Fabienne] Univ Liverpool, Sch Environm Sci, Dept Geog & Planning, Liverpool L69 7ZT, Merseyside, England; [Mertens, Kenneth Neil] IFREMER, LER BO, Stn Biol Marine, Concarneau, France	University of Liverpool; Ifremer	Marret, F (通讯作者)，Univ Liverpool, Sch Environm Sci, Dept Geog & Planning, Liverpool L69 7ZT, Merseyside, England.	f.marret@liverpool.ac.uk	Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015	Marret-Davies, Fabienne/0000-0003-4244-0437; Mertens, Kenneth/0000-0003-2005-9483				Fensome RA, 2004, CONTRIBUTIONS SERIES, V42; Head MJ, 2007, GEOL MAG, V144, P987, DOI 10.1017/S0016756807003780; Head MJ, 1996, J PALEONTOL, V70, P543, DOI 10.1017/S0022336000023532; Marret F, 2001, CAN J EARTH SCI, V38, P373, DOI 10.1139/e00-092; Reid P.C., 1974, Nova Hedwigia, V25, P579; Warny SA, 1997, REV PALAEOBOT PALYNO, V96, P281, DOI 10.1016/S0034-6667(96)00056-5	6	3	3	1	1	TAYLOR & FRANCIS INC	PHILADELPHIA	530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA	0191-6122	1558-9188		PALYNOLOGY	Palynology	DEC 20	2018	42			1	SI		89	92		10.1080/01916122.2018.1465734	http://dx.doi.org/10.1080/01916122.2018.1465734			4	Plant Sciences; Paleontology	Science Citation Index Expanded (SCI-EXPANDED); Conference Proceedings Citation Index - Science (CPCI-S)	Plant Sciences; Paleontology	HE5FC		Bronze			2025-03-11	WOS:000453398000005
J	Gurdebeke, PR; Mertens, KN; Bogus, K; Marret, F; Chomérat, N; Vrielinck, H; Louwye, S				Gurdebeke, Pieter R.; Mertens, Kenneth Neil; Bogus, Kara; Marret, Fabienne; Chomerat, Nicolas; Vrielinck, Henk; Louwye, Stephen			Taxonomic Re-Investigation and Geochemical Characterization of Reid's (1974) Species of <i>Spiniferites</i> from Holotype and Topotype Material	PALYNOLOGY			English	Article; Proceedings Paper	Workshop on Gonyaulax Diesing 1866	JUL 06-09, 2015	Flanders Marine Inst, Oostend, BELGIUM	Res Unit Palaeontol	Flanders Marine Inst	Dinoflagellate cyst; redescription; taxonomy; geochemistry; cyst wall composition; FTIR; dinosporin	CYST-THECA RELATIONSHIP; DINOFLAGELLATE CYST; MORPHOLOGY; SALINITY; NORTH; SEA; TEMPERATURE; SEDIMENTS	The genus Spiniferites currently encompasses 142 dinoflagellate cyst species. Some Spiniferites species are difficult to identify because of an incomplete or doubtful description, and/or substandard iconography. This study re-describes and re-illustrates the Spiniferites holotypes first described by Reid in 1974. It also discusses topotype material from surface sediments recovered from British estuaries, and attempts to provide further constraints on the classification of species in this genus using the geochemical characterization of their cyst walls. Reid described four new Spiniferites species: Spiniferites belerius, Spiniferites delicatus, Spiniferites elongatus and Spiniferites lazus. New photomicrographs are presented here for the holotypes of Spiniferites delicatus and Spiniferites elongatus, and additional morphological observations based on newly processed topotype material are given. The geochemical characterization of the Spiniferites cyst walls showed overall consistency with a carbohydrate-based dinosporin. However, variability in the dinosporins suggests that, in this genus, the cyst wall composition may be species-specific. Analysis of the characteristic spectral regions for unclassified Spiniferites species showed that, in some cases, it may be possible to constrain the likely species affinity using the cyst wall chemistry. However, in most cases, the morphologically unspeciated cysts did not show sufficient similarity to an identified species' cyst wall chemistry to be more conclusive. This could either reflect an intermediate species that cannot be clearly characterized using morphology or dinosporin composition, or it represents a completely different species. In either case, both the morphological and geochemical evaluations highlight the difficulties in classifying species of this genus unequivocally.	[Gurdebeke, Pieter R.; Mertens, Kenneth Neil; Louwye, Stephen] Univ Ghent, Dept Geol, Krijgslaan 281,S8, B-9000 Ghent, Belgium; [Mertens, Kenneth Neil; Chomerat, Nicolas] IFREMER, LER BO, Stn Biol Marine, Concarneau, France; [Bogus, Kara] Univ Nottingham, Sch Geog, Ctr Environm Geochem, Nottingham, England; [Bogus, Kara] Texas A&M Univ, Int Ocean Discovery Program, College Stn, TX 77843 USA; [Marret, Fabienne] Univ Liverpool, Sch Environm Sci, Liverpool, Merseyside, England; [Vrielinck, Henk] Univ Ghent, Dept Solid State Sci, Ghent, Belgium	Ghent University; Ifremer; University of Nottingham; Texas A&M University System; Texas A&M University College Station; University of Liverpool; Ghent University	Gurdebeke, PR (通讯作者)，Univ Ghent, Dept Geol, Krijgslaan 281,S8, B-9000 Ghent, Belgium.	pieter.gurdebeke@ugent.be	Gurdebeke, Pieter/AAY-7059-2020; Mertens, Kenneth/AAO-9566-2020; Vrielinck, Henk/M-8367-2016; Mertens, Kenneth/C-3386-2015; Louwye, Stephen/D-3856-2012	Mertens, Kenneth/0000-0003-2005-9483; Bogus, Kara/0000-0003-4690-0576; Marret-Davies, Fabienne/0000-0003-4244-0437; Chomerat, Nicolas/0000-0001-9691-6344; Gurdebeke, Pieter R./0000-0003-1425-8515; Louwye, Stephen/0000-0003-4814-4313	Hercules Foundation (Flanders) [AUGE/13/16]	Hercules Foundation (Flanders)	C. Wellman and P.C. Reid are thanked for permission to consult the holotype material in the University of Sheffield palaeontology collections. The Hercules Foundation (Flanders) is gratefully acknowledged for financial support (FT-IMAGER project AUGE/13/16).	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J	Mertens, KN; Carbonell-Moore, C				Mertens, Kenneth Neil; Carbonell-Moore, Consuelo			Introduction to <i>Spiniferites</i> Mantell 1850 special issue	PALYNOLOGY			English	Editorial Material						Spiniferites; Achomosphaera; Nematosphaeropsis; Gonyaulax	CYST-THECA RELATIONSHIP; DINOFLAGELLATE CYST; RECENT SEDIMENTS; GONYAULAX-SPINIFERA; SP-NOV; CLASSIFICATION; SEA; DINOPHYCEAE	The first chapter of this special issue introduces the proceedings of two workshops concerning the cyst-based genus Spiniferites Mantell 1850. The historical background of the cyst-based genus Spiniferites, its closely related genera and the theca-based genus Gonyaulax Diesing 1866 is presented here.	[Mertens, Kenneth Neil] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Carbonell-Moore, Consuelo] Oregon State Univ, Dept Bot & Plant Pathol, Coll Agr, Corvallis, OR 97331 USA	Ifremer; Oregon State University	Mertens, KN (通讯作者)，IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France.	kenneth.mertens@ifremer.fr	Mertens, Kenneth/AAO-9566-2020; Mertens, Kenneth/C-3386-2015	Mertens, Kenneth/0000-0003-2005-9483				Agelopoulos J., 1964, Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte, V11, P673; [Anonymous], 1993, SPEC PUBL NUMBER; [Anonymous], 1978, GEOLOGICAL SCI; [Anonymous], [No title captured]; [Anonymous], 1974, FOSSIL LIVING DINOFL; [Anonymous], 1883, ORGANISMUS INFUSIONS; Balech E, 1977, HIDROBIOLOGIA, V4, P1; Balech E., 1995, The genus Alexandrium Halim (Dinoflagellata); Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J	Ruvindy, R; Bolch, CJ; MacKenzie, L; Smith, KF; Murray, SA				Ruvindy, Rendy; Bolch, Christopher J.; MacKenzie, Lincoln; Smith, Kirsty F.; Murray, Shauna A.			qPCR Assays for the Detection and Quantification of Multiple Paralytic Shellfish Toxin-Producing Species of <i>Alexandrium</i>	FRONTIERS IN MICROBIOLOGY			English	Article						paralytic shellfish toxin; Alexandrium; qPCR; ribosomal DNA; Dinoflagellate cysts	REAL-TIME PCR; NEW-SOUTH-WALES; DINOFLAGELLATE GENUS ALEXANDRIUM; HARMFUL ALGAL BLOOMS; OSTENFELDII DINOPHYCEAE; MINUTUM DINOPHYCEAE; MOLECULAR-DETECTION; COASTAL WATERS; GLOBAL CLADE; TAMARENSE	Paralytic shellfish toxin producing dinoflagellates have negatively impacted the shellfish aquaculture industry worldwide, including in Australia and New Zealand. Morphologically identical cryptic species of dinoflagellates that may differ in toxicity, in particular, species of the former Alexandrium tamarense species complex, co-occur in Australia, as they do in multiple regions in Asia and Europe. To understand the dynamics and the ecological drivers of the growth of each species in the field, accurate quantification at the species level is crucial. We have developed the first quantitative polymerase chain reaction (qPCR) primers for A. australiense, and new primers targeting A. ostenfeldii, A. catenella, and A. pacificum. We showed that our new primers for A. pacificum are more specific than previously published primer pairs. These assays can be used to quantify planktonic cells and cysts in the water column and in sediment samples with limits of detection of 2 cells/L for the A. catenella and A. australiense assays, 2 cells/L and 1 cyst/mg sediment for the A. pacificum assay, and 1 cells/L for the A. ostenfeldii assay, and efficiencies of >90%. We utilized these assays to discriminate and quantify co-occurring A. catenella, A. pacificum, and A. australiense in samples from the east coast of Tasmania, Australia.	[Ruvindy, Rendy; Murray, Shauna A.] Univ Technol Sydney, Climate Change Cluster, Sydney, NSW, Australia; [Bolch, Christopher J.] Univ Tasmania, Inst Marine & Antarctic Studies, Launceston, Tas, Australia; [MacKenzie, Lincoln; Smith, Kirsty F.] Cawthron Inst, Nelson, New Zealand	University of Technology Sydney; University of Tasmania; Cawthron Institute	Ruvindy, R; Murray, SA (通讯作者)，Univ Technol Sydney, Climate Change Cluster, Sydney, NSW, Australia.	rendy.ruvindy@uts.edu.au; shauna.murray@uts.edu.au	Bolch, Christopher/J-7619-2014; Murray, Shauna/JAN-6668-2023; Murray, Shauna A/K-5781-2015	Murray, Shauna A/0000-0001-7096-1307	National Science Challenge, Sustainable Seas Innovation Fund [C01X1515, CAWX1801]	National Science Challenge, Sustainable Seas Innovation Fund	The provision of A. pacificum plankton and cyst data from the Marlborough Sounds was made possible through funding from the National Science Challenge, Sustainable Seas Innovation Fund (contract C01X1515) and the Seafood Safety Platform (MBIE contract #CAWX1801).	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Microbiol.	DEC 18	2018	9								3153	10.3389/fmicb.2018.03153	http://dx.doi.org/10.3389/fmicb.2018.03153			12	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	HE7YM	30619217	gold, Green Published			2025-03-11	WOS:000453658000001
J	Yñiguez, AT; Maister, J; Villanoy, CL; Deauna, JD; Peñaflor, E; Almo, A; David, LT; Benico, GA; Hibay, E; Mora, I; Arcamo, S; Relox, J; Azanza, RV				Yniguez, Aletta T.; Maister, Jennifer; Villanoy, Cesar L.; Deauna, Josephine Dianne; Penaflor, Eileen; Almo, Aldwin; David, Laura T.; Benico, Garry A.; Hibay, Ellen; Mora, Irmi; Arcamo, Sandra; Relox, Jun; Azanza, Rhodora V.			Insights into the dynamics of harmful algal blooms in a tropical estuary through an integrated hydrodynamic-<i>Pyrodinium</i>-shellfish model	HARMFUL ALGAE			English	Article						Harmful algal blooms; Pyrodinium bahamense; Life cycle; Biophysical model; Estuary; Seasonality	BAHAMENSE VAR. COMPRESSUM; ALEXANDRIUM-FUNDYENSE BLOOMS; HALF-SATURATION CONSTANTS; NITRATE UPTAKE; WESTERN GULF; MANILA BAY; TOXINS; CYST; TOXICITY; GROWTH	In contrast to temperate Harmful Algal Blooms (HABs), knowledge on the mechanisms driving tropical HABs are less well studied. The interaction of a seasonal temperature window, cysts (for certain species) and large-scale transport are some of the key processes in temperate HABs. In the Philippines, HABs occur not along long open coastlines, but in embayments that are highly influenced by run-off and stratification. These embayments are typically also the sites of cultured or wild harvest shellfish and other aquaculture activities. Sorsogon Bay in the northeastern Philippines has experienced prolonged shellfish-harvesting bans due to blooms by Pyrodinium bahamense var. compressum severely affecting the fisheries industry in this area, as well as leading to Paralytic Shellfish Poisoning illnesses and fatalities. A novel integrated model was developed that mechanistically captures the interactions between hydrodynamic conditions, nutrients, the life history (cells and cysts) of Pyrodinium, as well as the cultured shellfish within the bay and their ensuing toxicities due to ingestion of toxic Pyrodinium cells and cysts. This is the second model developed for HABs in the Philippines, and the first to integrate different components of Pyrodinium bloom dynamics. The model is modularly composed of a watershed nutrient and diffusion model, a 3D hydrodynamic model, a Pyrodinium population model and a shellfish toxin model. It was able to capture the observed temporal variations of Pyrodinium and shellfish toxicity. It was also able to represent some aspects of the spatial distribution in Sorsogon Bay though there were discrepancies. To explore the dynamics of blooms, the linkages between the bloom and decline of the Pyrodinium population with shellfish toxicity as affected by temperature, salinity and nutrients were investigated. Comparisons with field results showed the seasonality of blooms in Sorsogon Bay is driven by increased rainfall. The timing of these conditions is important in facilitating Pyrodinium excystment and reproduction. Model results showed as well the potential significance of shellfish grazing and dinoflagellate cell mortality in influencing the decline of the bloom, and toxicity levels. This approach is promising in helping to understand mechanisms for HABs more holistically, and the model can be further improved to provide more precise quantitative information.	[Yniguez, Aletta T.; Maister, Jennifer; Villanoy, Cesar L.; Deauna, Josephine Dianne; Penaflor, Eileen; Almo, Aldwin; David, Laura T.; Benico, Garry A.; Azanza, Rhodora V.] Univ Philippines, Inst Marine Sci, Quezon City, Philippines; [Hibay, Ellen; Mora, Irmi] Bur Fisheries & Aquat Resources Reg 5, San Agustin Pili, Camarines Sur, Philippines; [Arcamo, Sandra; Relox, Jun] Bur Fisheries & Aquat Resources Main, Quezon City, Philippines	University of the Philippines System; University of the Philippines Diliman	Yñiguez, AT (通讯作者)，Univ Philippines, Inst Marine Sci, Quezon City, Philippines.	atyniguez@msi.upd.edu.ph	Azanza, Rhodora/HGU-5811-2022; Benico, Garry/S-6313-2019	Benico, Garry/0000-0002-2617-0222	Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (PCAARRD), Department of Science and Technology	Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (PCAARRD), Department of Science and Technology	The development and analysis of this model was made by possible through the funding provided by the Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (PCAARRD), Department of Science and Technology for the projects Stratification and Algal Blooms in the Tropics and Development of a Harmful Algal Bloom Operational Predictive System for the Philippines. The contributions and support of the staff and researchers from the PhilHABS, HABTech and HABGen programs, as well as the Bureau of Fisheries and Aquatic Resources (BFAR) were also important in filling in information needed for the model. The administrative staff at the Marine Science Institute were vital in processing paperwork and conducting tasks that allowed the researchers to carry out their science. 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J	Meroni, L; Chiantore, M; Petrillo, M; Asnaghi, V				Meroni, L.; Chiantore, M.; Petrillo, M.; Asnaghi, V.			Habitat effects on <i>Ostreopsis</i> cf. <i>ovata</i> bloom dynamics	HARMFUL ALGAE			English	Article						Ostreopsis cf. ovata; Benthic dinoflagellates; Bloom dynamics; Urbanisation; Hydrodynamics; Substratum preference	MEDITERRANEAN SEA; GENUS OSTREOPSIS; COASTAL WATERS; COOLIA DINOPHYCEAE; PROLIFERATION; MANAGEMENT; ALGAE; GENOA; QUANTIFICATION; MICROALGAE	In the last few decades, Ostreopsis spp., toxic benthic dinolagellates of tropical origin, generated large interest in the Mediterranean Sea, where several bloom events have been observed. Ecology and proliferation dynamics of O. cf. ovata are driven by complex interactions among biotic and abiotic drivers, and understanding mechanisms triggering bloom events is still far from being complete. The aim of the present study is to highlight the role of different habitat conditions, elucidating the effects of i) exposure to hydrodynamic conditions, ii) macroalgal community and iii) urbanisation level, in driving O. cf. ovata bloom dynamics. A significant effect of hydrodynamics was observed only for cells in seawater, with higher abundances in sheltered zones, irrespective of the urbanisation level. Similarly, a significant effect of the dominant macroalgal community, with higher abundances in Corallinales and turf dominated communities, and lower ones in Cystoseira amentacea canopies, has been recorded, consistently in the differently urbanised sites. Additionally, stretches of the coast suffering from a more intense anthropic exploitation are in general more prone to the proliferation of potentially toxic benthic microalgae. All these results imply a larger risk exposure to toxic effects for humans in urban beaches and sheltered areas, usually more attended by swimmers and bathers. These findings underline the need to preserve, and eventually restore, canopy dominated assemblages, which presently are under regression because of human threats, providing a straightforward example that restoration of relevant habitats implies a cascading improvement of human welfare.	[Meroni, L.; Chiantore, M.; Petrillo, M.; Asnaghi, V.] Univ Genoa, DISTAV, Cso Europa 26, Genoa, Italy; [Asnaghi, V.] CoNISMa, Ple Flaminio 9, Rome, Italy; [Chiantore, M.] CNR IBF, Via De Marini 5, Genoa, Italy	University of Genoa; CoNISMa; Consiglio Nazionale delle Ricerche (CNR); Istituto di Biofisica (IBF-CNR)	Asnaghi, V (通讯作者)，Univ Genoa, DISTAV, Cso Europa 26, Genoa, Italy.	valentina.asnaghi@unige.it	Asnaghi, Valentina/AFT-8900-2022; Chiantore, Mariachiara/C-7070-2017	Chiantore, Mariachiara/0000-0002-5862-1470; Asnaghi, Valentina/0000-0003-1659-2613	European Union	European Union(European Union (EU))	This publication is a contribution to M3-HABs project funded by the European Union under the ENPI CBC Mediterranean Sea Basin Programme. Authors thank Dr. Anna Maria Rossi for her help in sample processing and cells identification and counting. 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J	Blanco, J; Martín-Morales, E; Alvarez, G				Blanco, Juan; Martin-Morales, Eva; Alvarez, Gonzalo			Stability of okadaic acid and 13-desmethyl spirolide C in seawater and sediment	MARINE CHEMISTRY			English	Article						Okadaic acid; Spirolide; Lipophilic toxins; Stability; Sediment; Seawater; Interstitial water	LIPOPHILIC MARINE TOXINS; DINOFLAGELLATE ALEXANDRIUM-OSTENFELDII; TANDEM MASS-SPECTROMETRY; ANAEROBIC BIODEGRADATION; DINOPHYSIS TOXINS; STEROLS; DEGRADATION; PERSISTENCE; BREVETOXIN; LIPIDS	Persistence of lipophilic toxins in different environmental compartments determines the way in which their concentrations can be used to evaluate temporal trends and associated risks. Short term stability of two lipophilic toxins, representing two chemically different groups of toxins - okadaic acid (OA) (Diarrhetic Shellfish Poisoning toxin) and 13-desmethyl spirolide C (13desmSPXC) (cyclic imine) - in seawater, interstitial water and sediment were analyzed. OA was found to be very stable in seawater, interstitial water and sediment, without significant changes over a 23-day period. Contrarily, 13desmSPXC was readily degraded, but faster in interstitial water than in seawater. In sediments, its degradation was also fast and dependent on the origin of the samples. 13desmSPXC was found in natural sediments, and this toxin was mostly associated to large particles (> 10 mu m) in the sediment, that are or include resting cysts of the producer species. Therefore, it appears that high concentrations of 13desmSPXC in seawater would indicate recent blooms of the producer species, while those of OA could be due to recent blooms or to others that took place long before detection. The absence of OA and 13desmSPXC indicates a low impact of those toxins in the study area.	[Blanco, Juan; Martin-Morales, Eva] Ctr Invest Marinas, Pedras de Coron S-N, Vilanova De Arousa 36620, Spain; [Alvarez, Gonzalo] Univ Catolica Norte, Dept Acuicultura, Fac Ciencias Mar, Larrondo 1281, Coquimbo, Chile; [Alvarez, Gonzalo] Univ Catolica Norte, CIDTA, Fac Ciencias Mar, Larrondo 1281, Coquimbo, Chile	Universidad Catolica del Norte; Universidad Catolica del Norte	Blanco, J (通讯作者)，Ctr Invest Marinas, Pedras de Coron S-N, Vilanova De Arousa 36620, Spain.	juan.carlos.blanco.perez@xunta.gal	Alvarez, Gonzalo/W-1262-2017; Blanco, Juan/A-8000-2008	Alvarez Vergara, Gonzalo/0000-0001-5812-1559; Blanco, Juan/0000-0003-2123-7747	Xunta de Galicia [PGDIT-12/02]; Conselleria do Mar of the Xunta de Galicia; Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2015) [79,150,008]	Xunta de Galicia(Xunta de Galicia); Conselleria do Mar of the Xunta de Galicia; Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2015)	This research was funded by Xunta de Galicia through the Project PGDIT-12/02. The work of Eva Martin-Morales was supported by a doctoral fellowship of the Conselleria do Mar of the Xunta de Galicia. Gonzalo Alvarez was funded by the Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2015, 79,150,008). We acknowledge Carmen Marino and Helena Martin for their technical assistance, as well as the crew of the vessel Chasula for their help in obtaining the sediment samples.	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Chem.	NOV 20	2018	207						21	25		10.1016/j.marchem.2018.10.007	http://dx.doi.org/10.1016/j.marchem.2018.10.007			5	Chemistry, Multidisciplinary; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Chemistry; Oceanography	HE0BV					2025-03-11	WOS:000452932700003
J	Dzhembekova, N; Moncheva, S; Ivanova, P; Slabakova, N; Nagai, S				Dzhembekova, Nina; Moncheva, Snejana; Ivanova, Petya; Slabakova, Nataliya; Nagai, Satoshi			Biodiversity of phytoplankton cyst assemblages in surface sediments of the Black Sea based on metabarcoding	BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT			English	Article						18S rDNA; resting stages; sediment eukaryotic biodiversity; high-throughput sequencing (HTS)	RESTING STAGES; ADRIATIC SEA; BAY; RAPHIDOPHYCEAE; GERMINATION	Resting stages are common for the life cycle of some phytoplankton species, including blooming and potentially toxic species. The "seed bank" accumulated in the sediments can initiate blooms in the water column and could be an early warning signal of harmful algal blooms (HABs). In order to identify the phytoplankton cyst assemblages, thirteen surface sediment samples were collected from different sites in the Black Sea. The diversity of the resting stages was assessed using high-throughput sequencing metabarcoding (V7-9 hypervariable region of the 18S rDNA). One hundred and eighty microalgal species were identified with high level of similarity to the reference sequences. Dinoflagellates were dominated by Biecheleria, Gymnodinium and Karlodinium. Within diatoms, Skeletonema, Chaetoceros and Thalassiosira were the most abundant genera. Sixteen of the detected operational taxonomic units (OTUs) were assigned to harmful microalgae (12 dinoflagellates species, 1 diatom, 1 haptophyte and 2 raphidophytes). No pattern of microalgal sequences depth distribution was discriminated. The results show that DNA metabarcoding has a great potential for assessment of the phytoplankton diversity in environmental sediments.	[Dzhembekova, Nina; Moncheva, Snejana; Ivanova, Petya; Slabakova, Nataliya] Bulgarian Acad Sci, Inst Oceanol, Marine Biol & Ecol Dept, Varna, Bulgaria; [Nagai, Satoshi] Japan Fisheries Res & Educ Agcy, Natl Res Inst Fisheries Sci, Res Ctr Aquat Genom, Yokohama, Kanagawa, Japan	Bulgarian Academy of Sciences; Japan Fisheries Research & Education Agency (FRA)	Ivanova, P (通讯作者)，Bulgarian Acad Sci, Inst Oceanol, Marine Biol & Ecol Dept, Varna, Bulgaria.	pavl_petya@yahoo.com	Slabakova, Nataliya/LHA-4700-2024; Ivanova, Petya/A-3217-2014; Nagai, Satoshi/HOA-8686-2023; Dzhembekova, Nina/HTN-3019-2023	Ivanova, Petya/0000-0002-7487-9033; Dzhembekova, Nina/0000-0001-9620-6422; Slabakova, Nataliya/0000-0002-3294-5346; Nagai, Satoshi/0000-0001-7510-0063	Ministry of Education and Science, Bulgaria under project "Phytoplankton cysts - an intricacy between a "memory" or a "potential" for Black sea biodiversity and algal blooms" [LH01/8]; Japan Society for the Promotion of Science [17H03855]; National Science Fund; Grants-in-Aid for Scientific Research [17H03855] Funding Source: KAKEN	Ministry of Education and Science, Bulgaria under project "Phytoplankton cysts - an intricacy between a "memory" or a "potential" for Black sea biodiversity and algal blooms"; Japan Society for the Promotion of Science(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); National Science Fund; Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	This work was supported by the National Science Fund, Ministry of Education and Science, Bulgaria under project "Phytoplankton cysts - an intricacy between a "memory" or a "potential" for Black sea biodiversity and algal blooms" (Grant number LH01/8, 16.12.2016) and the Japan Society for the Promotion of Science under a Grant-In-Aid for Scientific Research (Kiban-B) (grant number 17H03855).	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Biotechnol. Equip.	NOV 2	2018	32	6					1507	1513		10.1080/13102818.2018.1532816	http://dx.doi.org/10.1080/13102818.2018.1532816			7	Biotechnology & Applied Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology	HP1AX		gold			2025-03-11	WOS:000461398900018
J	Pinyol-Gallemí, A; Pedersen, LF; Koski, M				Pinyol-Gallemi, Aleix; Pedersen, Lars-Flemming; Koski, Marja			Towards control of unwanted cyst-forming dinoflagellates in aquaculture systems: Knockout and recovery of <i>Pfiesteria</i> sp after peracetic acid exposure	AQUACULTURE RESEARCH			English	Article						cyst formation; disinfection; HABs; PAA; RAS; staining method	WATER; DISINFECTION; DEGRADATION		[Pinyol-Gallemi, Aleix; Koski, Marja] Tech Univ Denmark, Natl Inst Aquat Resources, Sect Oceans & Arctic, Lyngby, Denmark; [Pedersen, Lars-Flemming] Tech Univ Denmark, Natl Inst Aquat Resources, Sect Aquaculture, North Sea Res Ctr, Hirtshals, Denmark	Technical University of Denmark; Technical University of Denmark	Pinyol-Gallemí, A (通讯作者)，PISCO Grp, DK-2100 Copenhagen O, Denmark.	apinyolgallemi@gmail.com	Pedersen, Lars-Flemming/D-9919-2011	Pinyol Gallemi, Aleix/0000-0003-3453-8629; Koski, Marja/0000-0002-1860-9768; Pedersen, Lars-Flemming/0000-0002-8361-9268	Danish EPA [MST-141-00416, 667-00199]	Danish EPA	Danish EPA, Grant/Award Number: MST-141-00416, 667-00199	Anderson D. M., 2016, GLOBAL AQUACULTURE A; Antonelli M, 2006, ENVIRON SCI TECHNOL, V40, P4771, DOI 10.1021/es060273f; Bravo Isabel, 2014, Microorganisms, V2, P11; Falsanisi D, 2006, WATER QUAL RES J CAN, V41, P398, DOI 10.2166/wqrj.2006.043; Fistarol GO, 2004, ENVIRON MICROBIOL, V6, P791, DOI 10.1111/j.1462-2920.2004.00609.x; Ganini D, 2013, HARMFUL ALGAE, V27, P121, DOI 10.1016/j.hal.2013.05.002; Kremp A, 2009, LIMNOL OCEANOGR, V54, P1125, DOI 10.4319/lo.2009.54.4.1125; Litaker R., 2002, J PHYCOL, V463, P442; Liu DB, 2016, AQUACULT REP, V4, P136, DOI 10.1016/j.aqrep.2016.09.002; Liu DB, 2014, AQUACULT ENG, V60, P35, DOI 10.1016/j.aquaeng.2014.03.006; Moestrup O, 2014, HARMFUL ALGAE, V32, P33, DOI 10.1016/j.hal.2013.12.002; Noble Alicia C., 1996, Annual Review of Fish Diseases, V6, P65, DOI 10.1016/S0959-8030(96)90006-X; Pedersen LF, 2013, AQUACULT ENG, V53, P65, DOI 10.1016/j.aquaeng.2012.11.011; Pedersen LF, 2009, AQUACULTURE, V296, P246, DOI 10.1016/j.aquaculture.2009.08.021; Subramani P. A., 2017, Fish diseases: prevention and control strategies, P81; Toth GB, 2004, P ROY SOC B-BIOL SCI, V271, P733, DOI 10.1098/rspb.2003.2654; Uchida T, 2001, J PLANKTON RES, V23, P889, DOI 10.1093/plankt/23.8.889; Whyte JNCI, 2001, PHYCOLOGIA, V40, P298, DOI 10.2216/i0031-8884-40-3-298.1	18	3	3	2	14	WILEY	HOBOKEN	111 RIVER ST, HOBOKEN 07030-5774, NJ USA	1355-557X	1365-2109		AQUAC RES	Aquac. Res.	NOV	2018	49	11					3682	3685		10.1111/are.13815	http://dx.doi.org/10.1111/are.13815			4	Fisheries	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries	GV9ZH		gold			2025-03-11	WOS:000446520500023
J	Potvin, É; Kim, SY; Yang, EJ; Head, MJ; Kim, HC; Nam, SI; Yim, JH; Kang, SH				Potvin, Eric; Kim, So-Young; Yang, Eun Jin; Head, Martin J.; Kim, Hyun-cheol; Nam, Seung-Il; Yim, Joung Han; Kang, Sung-Ho			<i>Islandinium minutum</i> subsp <i>barbatum</i> subsp nov (Dinoflagellata), a New Organic-Walled Dinoflagellate Cyst from the Western Arctic: Morphology, Phylogenetic Position Based on SSU rDNA and LSU rDNA, and Distribution	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						Arctic Ocean; Echinidinium karaense; modern sediment; "Polykrikos quadratus"; Polykrikos sp Arctic morphotype; ribosomal DNA; round brown spiny cyst; single-cell PCR	SEA-SURFACE CONDITIONS; SAND-DWELLING DINOFLAGELLATE; NORTHERN NORTH-ATLANTIC; THECA RELATIONSHIP; HYDROGRAPHIC CONDITIONS; MOLECULAR PHYLOGENY; SPATIAL-DISTRIBUTION; ESTUARINE SEDIMENTS; BAFFIN-BAY; ICE COVER	A study of modern sediment from the Western Arctic has revealed the presence of a distinctive brown-colored cyst with a spherical central body bearing unbranched processes that are usually solid with a small basal pericoel. Distinctive barbs project from some processes, and process tips are usually minutely expanded into conjoined barbs. The archeopyle is apical and saphopylic. This cyst corresponds to Islandinium? cezare morphotype 2 of Head et al. (2001, J. Quat. Sci., 16:621). Phylogenetic analyses based on the small and large subunit rRNA genes infer close relationship with Islandinium minutum, the type of which is that of the genus. Re-examination of specimens of I. minutum reveals the presence of minute barbs on its processes, but differences with Islandinium? cezare morphotype 2 remain based on size, process distribution, and barb development. Furthermore, the internal transcribed spacer shows I. minutum to be distinct from this morphotype. On the basis of these small but discrete differences, we propose the new subspecies Islandinium minutum subsp. barbatum subsp. nov. Molecular sequencing of other cysts encountered, namely Echinidinium karaense, an unidentified flattened cyst, and "Polykrikos quadratus", places them in the Monovela clade, the latter showing greater morphological variability than previously thought.	[Potvin, Eric; Kim, So-Young; Yang, Eun Jin; Kang, Sung-Ho] Korea Polar Res Inst, Div Polar Ocean Sci, 26 Songdomirae Ro, Incheon 406840, South Korea; [Head, Martin J.] Brock Univ, Dept Earth Sci, St Catharines, ON L2S 3A1, Canada; [Kim, Hyun-cheol] Korea Polar Res Inst, Unit Arctic Sea Ice Predict, Incheon 406840, South Korea; [Nam, Seung-Il] Korea Polar Res Inst, Div Polar Paleoenvironm, Incheon 406840, South Korea; [Yim, Joung Han] Korea Polar Res Inst, Div Polar Life Sci, Incheon 406840, South Korea	Korea Polar Research Institute (KOPRI); Brock University; Korea Polar Research Institute (KOPRI); Korea Polar Research Institute (KOPRI); Korea Polar Research Institute (KOPRI)	Kang, SH (通讯作者)，Korea Polar Res Inst, Div Polar Ocean Sci, 26 Songdomirae Ro, Incheon 406840, South Korea.	shkang@kopri.re.kr	Kim, So-Young/JFS-7698-2023; Kim, Hyun-Cheol/AAP-1250-2020	Yang, Eun Jin/0000-0002-8639-5968; Kim, Hyun-Cheol/0000-0002-6831-9291; Head, Martin/0000-0003-3026-5483	Ministry of Oceans and Fisheries of Korea [PM17040]; program on the Commercialization of Useful Metabolites from Polar Organisms from the Korea Polar Research Institute [PE17100]; NRF of Korea - the Korean Government [NRF-2015M1A5A1037243]; Danish Council for Independent Research, Natural Science [12-126709/FNU]; Natural Sciences and Engineering Research Council of Canada	Ministry of Oceans and Fisheries of Korea; program on the Commercialization of Useful Metabolites from Polar Organisms from the Korea Polar Research Institute(Korea Polar Research Institute of Marine Research Placement (KOPRI)); NRF of Korea - the Korean Government; Danish Council for Independent Research, Natural Science(Det Frie Forskningsrad (DFF)); Natural Sciences and Engineering Research Council of Canada(Natural Sciences and Engineering Research Council of Canada (NSERC)CGIAR)	We are grateful to the anonymous reviewers for their valuable suggestions. We also thank Nicolas Van Nieuwenhove who provided sediment from the Labrador Sea. This research was part of the project "K-AOOS (KOPRI, PM17040)" funded by the Ministry of Oceans and Fisheries of Korea. This research was also supported by the program on the Commercialization of Useful Metabolites from Polar Organisms (PE17100) from the Korea Polar Research Institute, the NRF of Korea Grant funded by the Korean Government (NRF-2015M1A5A1037243), as well as the Danish Council for Independent Research, Natural Science (project 12-126709/FNU). Martin J. Head acknowledges support from a Natural Sciences and Engineering Research Council of Canada Discovery Grant.	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Eukaryot. Microbiol.	NOV-DEC	2018	65	6					750	772		10.1111/jeu.12518	http://dx.doi.org/10.1111/jeu.12518			23	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	HC4OR	29575394				2025-03-11	WOS:000451783600001
J	Tomasovych, A; Gallmetzer, I; Haselmair, A; Kaufman, DS; Kralj, M; Cassin, D; Zonta, R; Zuschin, M				Tomasovych, Adam; Gallmetzer, Ivo; Haselmair, Alexandra; Kaufman, Darrell S.; Kralj, Martina; Cassin, Daniele; Zonta, Roberto; Zuschin, Martin			Tracing the effects of eutrophication on molluscan communities in sediment cores: outbreaks of an opportunistic species coincide with reduced bioturbation and high frequency of hypoxia in the Adriatic Sea	PALEOBIOLOGY			English	Article							GULF-OF-TRIESTE; GREAT-BARRIER-REEF; LONG-TERM CHANGES; ORGANIC-MATTER; PO PLAIN; MARINE-SEDIMENTS; ENVIRONMENTAL-CHANGES; DINOFLAGELLATE CYSTS; TEMPORAL RESOLUTION; DEATH ASSEMBLAGES	Estimating the effects and timing of anthropogenic impacts on the composition of macrobenthic communities is challenging, because early twentieth-century surveys are sparse and the corresponding intervals in sedimentary sequences are mixed by bioturbation. Here, to assess the effects of eutrophication on macrobenthic communities in the northern Adriatic Sea, we account for mixing with dating of the bivalve Corbula gibba at two stations with high accumulation (Po prodelta) and one station with moderate accumulation (Isonzo prodelta). We find that, first, pervasively bioturbated muds typical of highstand conditions deposited in the early twentieth century were replaced by muds with relicts of flood layers and high content of total organic carbon (TOC) deposited in the late twentieth century at the Po prodelta. The twentieth century shelly muds at the Isonzo prodelta are amalgamated but also show an upward increase in TOC. Second, dating of C. gibba shells shows that the shift from the early to the late twentieth century is characterized by a decrease in stratigraphic disorder and by an increase in temporal resolution of assemblages from similar to 25-50 years to similar to 10-20 years in both regions. This shift reflects a decline in the depth of the fully mixed layer from more than 20 cm to a few centimeters. Third, the increase in abundance of the opportunistic species C. gibba and the loss of formerly abundant, hypoxia-sensitive species coincided with the decline in bioturbation, higher preservation of organic matter, and higher frequency of seasonal hypoxia in both regions. This depositional and ecosystem regime shift occurred in ca. a.d. 1950. Therefore, the effects of enhanced food supply on macrobenthic communities were overwhelmed by oxygen depletion, even when hypoxic conditions were limited to few weeks per year in the northern Adriatic Sea. Preservation of trends in molluscan abundance and flood events in cores was enhanced by higher frequency of hypoxia that reduced bioturbation in the late twentieth century.	[Tomasovych, Adam] Slovak Acad Sci, Earth Sci Inst, Dubravska Cesta 9, Bratislava 84005, Slovakia; [Gallmetzer, Ivo; Haselmair, Alexandra; Zuschin, Martin] Univ Vienna, Dept Palaeontol, Althanstr 14, A-1090 Vienna, Austria; [Kaufman, Darrell S.] No Arizona Univ, Sch Earth Sci & Environm Sustainabil, Campus Box 4099, Flagstaff, AZ 86011 USA; [Kralj, Martina] Ist Nazl Oceanog & Geofis Sperimentale, Via A Piccard 54, I-34014 Trieste, Italy; [Cassin, Daniele; Zonta, Roberto] CNR, Ist Sci Marine, Castello 2737-F, I-30122 Venice, Italy	Slovak Academy of Sciences; Earth Science Institute, SAS; University of Vienna; Northern Arizona University; Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Marine (ISMAR-CNR)	Tomasovych, A (通讯作者)，Slovak Acad Sci, Earth Sci Inst, Dubravska Cesta 9, Bratislava 84005, Slovakia.	geoltoma@savba.sk; ivo.gallmetzer@univie.ac.at; alexandra.haselmair@univie.ac.at; Darrell.Kaufman@nau.edu; mkralj@inogs.it; daniele.cassin@ve.ismar.cnr.it; roberto.zonta@ve.ismar.cnr.it; martin.zuschin@univie.ac.at	Kaufman, Darrell/A-2471-2008; CASSIN, DANIELE/LXU-7801-2024; Zuschin, Martin/M-9951-2016; Tomasovych, Adam/C-9623-2010	Kralj, Martina/0000-0003-1544-5515; Zuschin, Martin/0000-0002-5235-0198; Tomasovych, Adam/0000-0002-0471-9480; CASSIN, DANIELE/0000-0001-7517-7597	Austrian Science Fund (FWF) [P24901]; Slovak Research and Development Agency [APVV 17-0555]; Slovak Grant Agency [VEGA 0136-15]; Austrian Science Fund (FWF) [P24901] Funding Source: Austrian Science Fund (FWF)	Austrian Science Fund (FWF)(Austrian Science Fund (FWF)); Slovak Research and Development Agency(Slovak Research and Development Agency); Slovak Grant Agency(Vedecka grantova agentura MSVVaS SR a SAV (VEGA)); Austrian Science Fund (FWF)(Austrian Science Fund (FWF))	We thank M. Aberhan, L. C. Anderson, and one anonymous reviewer for comments. This study was funded by the Austrian Science Fund (FWF project P24901), the Slovak Research and Development Agency (APVV 17-0555), and the Slovak Grant Agency (VEGA 0136-15). We thank J. Sedmak and F. Perco for help with sampling, D. A. Garcia Ramos for help with determination of trace fossils, and K. Whitacre for amino acid analyses. The authors would like to thank to M. Celio of ARPAFVG for onboard activities and hydrological data.	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J	Fischer, AD; Brosnahan, ML; Anderson, DM				Fischer, Alexis D.; Brosnahan, Michael L.; Anderson, Donald M.			Quantitative Response of <i>Alexandrium catenella</i> Cyst Dormancy to Cold Exposure	PROTIST			English	Article						Resting cyst; dinoflagellate; dormancy; chilling; germination; endogenous clock	EASTERN BERING-SEA; LIFE-CYCLE EVENTS; GONYAULAX-TAMARENSIS; RESTING CYSTS; PUGET-SOUND; VERTICAL MIGRATION; SHELLFISH TOXICITY; DINOPHYCEAE CYSTS; BUD DORMANCY; CHUKCHI SEA	Many dinoflagellate cysts experience dormancy, a reversible state that prevents germination during unfavorable periods. Several of these species also cause harmful algal blooms (HABs), so a quantitative understanding of dormancy cycling is desired for better prediction and mitigation of bloom impacts. This study examines the effect of cold exposure on the duration of dormancy in Alexandrium catenella, a HAB dinoflagellate that causes paralytic shellfish poisoning (PSP). Mature, dormant cysts from Nauset Marsh (Cape Cod, MA USA) were stored at low but above freezing temperatures for up to six months. Dormancy status was then determined at regular intervals using a germination assay. Dormancy timing was variable among temperatures and was shorter in colder treatments, but the differences collapse when temperature and duration of storage are scaled by chilling-units (CU), a common horticultural predictor of plant and insect development in response to weather. Cysts within Nauset meet a well-defined chilling requirement by late January, after which they are poised to germinate with the onset of favorable conditions in spring. Cysts thus modulate their dormancy cycles in response to their temperature history, enhancing the potential for new blooms and improving this species' adaptability to both unseasonable weather and new habitats/climate regimes. (C) 2018 Elsevier GmbH. All rights reserved.	[Fischer, Alexis D.; Brosnahan, Michael L.; Anderson, Donald M.] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA; [Fischer, Alexis D.] Univ Calif Santa Cruz, Ocean Sci Dept, Santa Cruz, CA 95064 USA	Woods Hole Oceanographic Institution; University of California System; University of California Santa Cruz	Fischer, AD (通讯作者)，Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA.; Fischer, AD (通讯作者)，Univ Calif Santa Cruz, Ocean Sci Dept, Santa Cruz, CA 95064 USA.	adfische@ucsc.edu	Fischer, Alexis/M-4531-2019	Brosnahan, Michael/0000-0002-2620-7638; Fischer, Alexis/0000-0002-8028-487X	National Science Foundation [OCE-0430724, OCE-0911031]; National Institute of Environmental Health Sciences [1P50ES01274201, 1P01ES021923]; National Park Service Cooperative Agreement [H238015504]; Friends of Cape Cod National Seashore	National Science Foundation(National Science Foundation (NSF)); National Institute of Environmental Health Sciences(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Environmental Health Sciences (NIEHS)); National Park Service Cooperative Agreement; Friends of Cape Cod National Seashore	We are grateful to F. Correia and D. Kulis for their assistance with experimental monitoring and setup and to the many members of the Anderson lab for their assistance with sampling trips to Nauset. Many thanks to A. Solow for his sage statistical advice and to D. Ralston for his feedback. This work was supported by the National Science Foundation [OCE-0430724, OCE-0911031]; the National Institute of Environmental Health Sciences [1P50ES01274201, 1P01ES021923]; the National Park Service Cooperative Agreement [H238015504]; and the Friends of Cape Cod National Seashore.	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J	Skarlato, S; Filatova, N; Knyazev, N; Berdieva, M; Telesh, I				Skarlato, Sergei; Filatova, Natalya; Knyazev, Nikolay; Berdieva, Mariia; Telesh, Irena			Salinity stress response of the invasive dinoflagellate <i>Prorocentrum minimum</i>	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article; Proceedings Paper	Estuarine-and-Coastal-Sciences-Association (ECSA) 56th Conference on Coastal Systems in Transition - From a Natural to and Anthropogenically-Modified State	SEP 04-07, 2016	Bremen, GERMANY	Estuarine & Coastal Sci Assoc		Cell cycle; Dinoflagellates; Invasions; Mortality; Prorocentrum minimum; Salinity stress	PROTISTAN SPECIES-MAXIMUM; BALTIC SEA; CELL-CYCLE; MARINE-PHYTOPLANKTON; GRADIENT; NITROGEN; BLOOMS; DINOPHYCEAE; DIVERSITY; IMPACTS	Estuarine and coastal environments are vulnerable to alien species invasions. Many nonindigenous organisms demonstrate high ecological plasticity, which is particularly well expressed in unicellular eukaryotes. In this study, responses of the potentially toxic invasive dinoflagellate Prorocentrum minimum, initially acclimated to salinity 17 (control), to short-term stress by salinities 4, 8 and 35 were investigated experimentally by determination of mortality, alterations in cell cycle and chromosome fine structure, RNA synthesis and DNA replication. The percentage of dead cells within the P. minimum population after stress by critical salinity 8 was lower compared to the other tested conditions. Salinity stress caused only moderate impact on the cell cycle pattern; changes of chromosome fine structure at salinities 4 and 8 were evident though reversible. We disclosed the elevated RNA synthesis and DNA replication which can play a 'compensational' role by speeding up the metabolic (synthetic) activity of these protists at the critical salinity conditions. The increased RNA synthesis in phase G1 and additional DNA replication in phase S of the cell cycle likely enhance salinity tolerance and cause relatively low mortality of these micro-eukaryotes at salinity 8. We infer that the enhanced synthesis of DNA and RNA can be one of the advanced ecological strategies of P. minimum which along with the other cellular and physiological characteristics (small body size, planktonic mode of life, fast reproduction, high evolution rates, mixotrophy, ability to form cysts, etc.) helps these dinoflagellates to invade successfully and populate permanently coastal ecosystems, remaining highly competitive in the unstable brackishwater environments. (C) 2017 Elsevier Ltd. All rights reserved.	[Skarlato, Sergei; Filatova, Natalya; Knyazev, Nikolay; Berdieva, Mariia; Telesh, Irena] Russian Acad Sci, Inst Cytol, St Petersburg 194064, Russia; [Knyazev, Nikolay] St Petersburg Acad Univ, Nanotechnol Res & Educ Ctr, St Petersburg 194021, Russia; [Telesh, Irena] Russian Acad Sci, Inst Zool, St Petersburg 199034, Russia	Russian Academy of Sciences; St. Petersburg Scientific Centre of the Russian Academy of Sciences; Institute of Cytology RAS; Russian Academy of Sciences; St. Petersburg Scientific Centre of the Russian Academy of Sciences; St Petersburg Academic University; Russian Academy of Sciences; Zoological Institute of the Russian Academy of Sciences	Telesh, I (通讯作者)，Russian Acad Sci, Inst Cytol, St Petersburg 194064, Russia.	Irena.Telesh@zin.ru	Skarlato, Sergei/W-4663-2017; Telesh, Irena/N-4342-2016; Filatova, Natalia/AAF-1414-2021; Berdieva, Mariia/V-6811-2018; Knyazev, Nickolay/E-1870-2014	Berdieva, Mariia/0000-0002-5467-2713; Telesh, Irena/0000-0002-4167-3821; Skarlato, Sergei/0000-0001-7579-7227; Filatova, Natalia/0000-0001-9955-6612; Knyazev, Nickolay/0000-0002-7507-8051	Russian Science Foundation (Institute of Cytology RAS) [16-14-10116]; Russian Science Foundation [16-14-10116] Funding Source: Russian Science Foundation	Russian Science Foundation (Institute of Cytology RAS); Russian Science Foundation(Russian Science Foundation (RSF))	Three anonymous reviewers are acknowledged for their valuable comments and suggestions that allowed improving the manuscript significantly. The study was funded by the Russian Science Foundation (project 16-14-10116 at the Institute of Cytology RAS).	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Coast. Shelf Sci.	OCT 31	2018	211				SI		199	207		10.1016/j.ecss.2017.07.007	http://dx.doi.org/10.1016/j.ecss.2017.07.007			9	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED); Conference Proceedings Citation Index - Science (CPCI-S)	Marine & Freshwater Biology; Oceanography	GV5NE					2025-03-11	WOS:000446148100018
J	Luo, ZH; Hu, ZX; Tang, YZ; Mertens, KN; Leaw, CP; Lim, PT; Teng, ST; Wang, L; Gu, HF				Luo, Zhaohe; Hu, Zhangxi; Tang, Yingzhong; Mertens, Kenneth Neil; Leaw, Chui Pin; Lim, Po Teen; Teng, Sing Tung; Wang, Lei; Gu, Haifeng			MORPHOLOGY, ULTRASTRUCTURE, AND MOLECULAR PHYLOGENY OF <i>WANGODINIUM SINENSE</i> GEN. ET SP NOV (GYMNODINIALES, DINOPHYCEAE) AND REVISITING OF <i>GYMNODINIUM DORSALISULCUM</i> AND <i>GYMNODINIUM IMPUDICUM</i>	JOURNAL OF PHYCOLOGY			English	Article						apical structure complex; cyst; dinoflagellate; Lepidodinium; nuclear chambers; pigment; pyrenoid; ultrastructure	WESTERN KOREA MORPHOLOGY; BLOOM-FORMING DINOFLAGELLATE; NW MEDITERRANEAN SEA; SHIWHAENSE N. GEN.; LSU RDNA SEQUENCE; COASTAL WATERS; COMB. NOV; RIBOSOMAL DNA; ALEXANDRIUM DINOPHYCEAE; UNARMORED DINOPHYCEAE	The genus Gymnodinium includes many morphologically similar species, but molecular phylogenies show that it is polyphyletic. Eight strains of Gymnodinium impudicum, Gymnodinium dorsalisulcum and a novel Gymnodinium-like species from Chinese and Malaysian waters and the Mediterranean Sea were established. All of these strains were examined with light microscopy, scanning electron microscopy and transmission electron microscopy. SSU, LSU and internal transcribed spacers rDNA sequences were obtained. A new genus, Wangodinium, was erected to incorporate strains with a loop-shaped apical structure complex (ASC) comprising two rows of amphiesmal vesicles, here referred to as a new type of ASC. The chloroplasts of Wangodinium sinense are enveloped by two membranes. Pigment analysis shows that peridinin is the main accessory pigment in W. sinense. Wangodinium differs from other genera mainly in its unique ASC, and additionally differs from Gymnodinium in the absence of nuclear chambers, and from Lepidodinium in the absence of Chl b and nuclear chambers. New morphological information was provided for G. dorsalisulcum and G. impudicum, e.g., a short sulcal intrusion in G. dorsalisulcum; nuclear chambers in G. impudicum and G. dorsalisulcum; and a chloroplast enveloped by two membranes in G. impudicum. Molecular phylogeny was inferred using maximum likelihood and Bayesian inference with independent SSU and LSU rDNA sequences. Our results support the classification of Wangodinium within the Gymnodiniales sensu stricto clade and it is close to Lepidodinium. Our results also support the close relationship among G. dorsalisulcum, G. impudicum, and Barrufeta. Further research is needed to assign these Gymnodinium species to Barrufeta or to erect new genera.	[Luo, Zhaohe; Wang, Lei; Gu, Haifeng] SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Hu, Zhangxi; Tang, Yingzhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Mertens, Kenneth Neil] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Leaw, Chui Pin; Lim, Po Teen] Univ Malaya, Inst Ocean & Earth Sci, Bachok Marine Res Stn, Bachok 16310, Kelantan, Malaysia; [Teng, Sing Tung] Univ Malaysia Sarawak, Fac Resource Sci & Technol, Kota Samarahan 94300, Sarawak, Malaysia	Third Institute of Oceanography, Ministry of Natural Resources; Chinese Academy of Sciences; Institute of Oceanology, CAS; Ifremer; Universiti Malaya; University of Malaysia Sarawak	Gu, HF (通讯作者)，SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China.	guhaifeng@tio.org.cn	Teng, SingTung/E-8281-2015; ZHANG, hui jie/HTN-1690-2023; Mertens, Kenneth/AAO-9566-2020; Luo, Zhaohe/ITT-7163-2023; Leaw, Chui Pin/F-5220-2012; Mertens, Kenneth/C-3386-2015; Lim, Po Teen/C-9758-2013; Gu, Haifeng/ADN-4528-2022	Mertens, Kenneth/0000-0003-2005-9483; Teng, Sing Tung/0000-0002-8872-0963; Lim, Po Teen/0000-0003-2823-0564; Luo, Zhaohe/0000-0001-8662-2414; Hu, Zhangxi/0000-0002-4742-4973; Gu, Haifeng/0000-0002-2350-9171	National Natural Science Foundation of China [41676117]; NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]; Qingdao National Laboratory for Marine Science [2016ASKJ02]; MOSTI; Scientific and Technological Innovation Project	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences; Qingdao National Laboratory for Marine Science; MOSTI(Ministry of Energy, Science, Technology, Environment and Climate Change (MESTECC), Malaysia); Scientific and Technological Innovation Project	We thank two anonymous reviewers for constructive suggestions that improved the manuscript greatly. This work was supported by the National Natural Science Foundation of China (41676117), the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences (U1606404), and the Scientific and Technological Innovation Project supported by the Qingdao National Laboratory for Marine Science (2016ASKJ02). Research permission was given by Marine Park of Malaysia and fund from MOSTI for sampling in Perhentian Island.	Adachi M, 1996, J PHYCOL, V32, P424, DOI 10.1111/j.0022-3646.1996.00424.x; Al-Qassab S, 2002, ACTA PROTOZOOL, V41, P91; Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; Attaran-Fariman G, 2007, PHYCOLOGIA, V46, P644, DOI 10.2216/07-05.1; Biecheler B., 1952, Bull. Biol. Fr. Belg., V36, P1; BRADBURY PC, 1983, J ULTRA MOL STRUCT R, V85, P24, DOI 10.1016/S0022-5320(83)90113-2; Campbell P. 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Phycol.	OCT	2018	54	5					744	761		10.1111/jpy.12780	http://dx.doi.org/10.1111/jpy.12780			18	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	GV5VD	30144373	Green Published, Green Accepted			2025-03-11	WOS:000446171600014
J	Wu, HY; Luan, QS; Guo, MM; Gu, HF; Zhai, YX; Tan, ZJ				Wu, Hai-Yan; Luan, Qing-Shan; Guo, Meng-Meng; Gu, Hai-Feng; Zhai, Yu-Xiu; Tan, Zhi-Jun			Phycotoxins in scallops (<i>Patinopecten yessoensis</i>) in relation to source, composition and temporal variation of phytoplankton and cysts in North Yellow Sea, China	MARINE POLLUTION BULLETIN			English	Article						Phycotoxins; Phytoplankton; Cyst; Risk assessment	PARALYTIC SHELLFISH TOXINS; AZADINIUM-POPORUM DINOPHYCEAE; SOLID-PHASE EXTRACTION; HARMFUL ALGAL BLOOMS; LIQUID-CHROMATOGRAPHY; MASS-SPECTROMETRY; BIVALVE MOLLUSKS; MARINE BIOTOXINS; VARIABILITY; PHYLOGENY	The North Yellow Sea is a major aquaculture production area for the scallop Patinopecten yessoensis. In this study, the temporal and spatial variation of phycotoxins in scallops, phytoplankton, and their cysts were analyzed during a survey conducted from June 2011 to April 2012 around Zhangzi Island. The study area is a semi enclosed epicontinental sea surrounded by the Shandong Peninsula, the Liaodong Peninsula and the Korean Peninsula. The three main results of the study were as follows: (1) The saxitoxin-group toxins, okadaic acid and analogues, and pectenotoxins were the major phycotoxin residues found in scallops; (2) Six kinds of toxic microalgae were identified, Protoperidinium spp., Gonyatdax spp., and Alexandriurn spp. were the dominant taxa; Seven types of potential marine toxin-producing dinoflagellates, A. tamarense, A. catenella, Dinophysis forth, G. catenatum, Gambierdiscus toxicus, Azadinturn poporwn, and Pseudo-nitzschia pungen were identified as the primary source of phycotoxins and were present at relatively high density from June to October; and (3) azaspiracids and domoic acid might be new potential sources of toxin pollution. This study represents the first assessment to phycotoxins around Zhangzi Island in the North Yellow Sea.	[Wu, Hai-Yan; Luan, Qing-Shan; Guo, Meng-Meng; Zhai, Yu-Xiu; Tan, Zhi-Jun] Minist Agr, Key Lab Testing & Evaluat Aquat Product Safety &, Qingdao 266071, Peoples R China; [Wu, Hai-Yan; Luan, Qing-Shan; Guo, Meng-Meng; Zhai, Yu-Xiu; Tan, Zhi-Jun] Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Qingdao 266071, Peoples R China; [Wu, Hai-Yan; Luan, Qing-Shan; Guo, Meng-Meng; Zhai, Yu-Xiu; Tan, Zhi-Jun] Carbon Sink Fisheries Lab, Qingdao 266071, Peoples R China; [Gu, Hai-Feng] Third Inst Oceanog, SOA, Xiamen 361005, Peoples R China	Ministry of Agriculture & Rural Affairs; Chinese Academy of Fishery Sciences; Yellow Sea Fisheries Research Institute, CAFS; Third Institute of Oceanography, Ministry of Natural Resources	Tan, ZJ (通讯作者)，106 Nanjing Ave, Qingdao, Shandong, Peoples R China.	wuhy@ysfri.ac.cn; qingsl@ysfri.ac.cn; guomm@ysfri.ac.cn; zhaiyx@ysfri.ac.cn; tanzj@ysfri.ac.cn	Luan, Qingshan/LXW-4416-2024; Gu, Haifeng/ADN-4528-2022	WU, Haiyan/0000-0001-5880-3998; Gu, Haifeng/0000-0002-2350-9171	National Key R&D Program of China [2017YFC1600701]; National Natural Science Foundation of China [31772075]	National Key R&D Program of China; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was supported by the National Key R&D Program of China (grant No. 2017YFC1600701) and the National Natural Science Foundation of China (grant No. 31772075).	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OCT	2018	135						1198	1204		10.1016/j.marpolbul.2018.08.045	http://dx.doi.org/10.1016/j.marpolbul.2018.08.045			7	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	GX9BT	30301019				2025-03-11	WOS:000448094200131
J	Dawut, M; Sym, SD; Horiguchi, T				Dawut, Mahmutjan; Sym, Stuart D.; Horiguchi, Takeo			Re-investigation of <i>Gymnodinium natalense</i> (Dinophyceae), a tidal pool dinoflagellate from South Africa and the proposal of a new combination <i>Ansanella natalensis</i>	PHYCOLOGICAL RESEARCH			English	Article						amphiesmal vesicle; phylogeny; small subunit rDNA; taxonomy; ultrastructure	SP-NOV DINOPHYCEAE; BIECHELERIOPSIS-ADRIATICA; WOLOSZYNSKIA-CINCTA; COASTAL WATERS; GEN.; ULTRASTRUCTURE; INFERENCE; MRBAYES; MODELS	A small tidal pool bloom-forming dinoflagellate, Gymnodinium natalense T. Horiguchi & Pienaar, sampled from its type locality in South Africa, was re-investigated and a new combination Ansanella natalensis (T. Horiguchi & Pienaar) Dawut, Sym T. Horiguchi comb. nov. was proposed. The species was originally described as a new species of the genus Gymnodinium, and later, Moestrup et al. (2009a) transferred it to their new genus Biecheleria based on morphological resemblance. However, no molecular data were available at that time, making confirmation of its phylogenetic affinities impossible. An organism more-recently isolated from the type locality was confirmed as G. natalense based on its morphological features. In addition, we were able to characterize details of its surface structure, which were lacking in the original description. Cells were covered with small, mostly hexagonal, amphiesmal vesicles (AV) arranged in 11-13 latitudinal rows. The episome contained an elongated amphiesmal vesicle (EAV) enclosing approximately 25 knobs in linear array. A phylogenetic analysis based on SSU rDNA sequences revealed that this dinoflagellate was closely related to Ansanella granifera the only member of the genus. The G. natalense shared numerous characteristics with A. granifera, such as the arrangement of AVs in a similar number of latitudinal rows, the shape and position of the EAV, the possession of a type E eyespot, a similar type of pyrenoid, the absence of a peduncle and nuclear chambers, the lack of a nuclear fibrous connective and no resting cyst-like cells. Yet, it also showed some morphological differences, i.e. the possession of a single chloroplast that lacks grana-like thylakoids, which separate it from A. granifera. These morphological features, along with its highly supported molecular affinity with A. granifera, led to the conclusion that this dinoflagellate represents a new member of this genus, i.e. A. natalensis comb. nov. The phylogenetic analysis showed no support for a close relationship with members of the genus Biecheleria.	[Dawut, Mahmutjan] Hokkaido Univ, Grad Sch Sci, Dept Nat Hist Sci, Sapporo, Hokkaido, Japan; [Sym, Stuart D.] Univ Witwatersrand, Sch Anim Plant & Environm Sci, Johannesburg, South Africa; [Horiguchi, Takeo] Hokkaido Univ, Fac Sci, Dept Biol Sci, Sapporo, Hokkaido, Japan	Hokkaido University; University of Witwatersrand; Hokkaido University	Horiguchi, T (通讯作者)，Hokkaido Univ, Fac Sci, Dept Biol Sci, Sapporo, Hokkaido, Japan.	horig@sci.hokudai.ac.jp	Horiguchi, Takeo/D-7612-2012	Horiguchi, Takeo/0000-0002-6118-8460	Japan Science and Technology Agency; National Research Foundation (South Africa); JSPS [24370034]	Japan Science and Technology Agency(Japan Science & Technology Agency (JST)); National Research Foundation (South Africa)(National Research Foundation - South Africa); JSPS(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science)	The strains used in this study were collected on one of the field trips for a project entitled 'Biodiversity and evolution of algae in the Indo-Pacific: a Japan/South Africa comparison' (Strategic International Research Cooperative Program) supported by the Japan Science and Technology Agency and the National Research Foundation (South Africa). 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Res.	OCT	2018	66	4					300	309		10.1111/pre.12329	http://dx.doi.org/10.1111/pre.12329			10	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	GY8KQ					2025-03-11	WOS:000448876000006
J	Lewis, AM; Coates, LN; Turner, AD; Percy, L; Lewis, J				Lewis, Adam Michael; Coates, Lewis Nicholas; Turner, Andrew D.; Percy, Linda; Lewis, Jane			A REVIEW OF THE GLOBAL DISTRIBUTION OF <i>ALEXANDRIUM MINUTUM</i> (DINOPHYCEAE) AND COMMENTS ON ECOLOGY AND ASSOCIATED PARALYTIC SHELLFISH TOXIN PROFILES, WITH A FOCUS ON NORTHERN EUROPE	JOURNAL OF PHYCOLOGY			English	Review						Alexandrium minutum; ecology; geographic distribution; paralytic shellfish toxins; toxin profiling	RECENT MARINE-SEDIMENTS; HARMFUL ALGAL BLOOMS; IRISH COASTAL WATERS; REAL-TIME PCR; DINOFLAGELLATE CYST ASSEMBLAGES; GENUS ALEXANDRIUM; ENVIRONMENTAL-FACTORS; MEDITERRANEAN LAGOON; POISONING TOXINS; CORK HARBOR	Alexandrium minutum is a globally distributed harmful algal bloom species with many strains that areknown to produce paralytic shellfish toxins (PSTs) and consequently represent a concern to human andecosystem health. This review highlightsthat A.minutum typically occurs in sheltered locations, with cell growth occurring during periods of stable water conditions. Sediment characteristics are important in the persistence of this species within a location, with fine sediments providing cyst deposits for ongoing inoculation to the water column. Toxic strains of A.minutum do not produce a consistent toxin profile, different populations produce a range of PSTs in differing quantities. Novel cluster analysis of published A.minutum toxin profiles indicates five PST profile clusters globally. Some clusters are grouped geographically (Northern Europe) while others are widely spread. Isolates from Taiwan have arange of toxin profile clusters and this area appears to have the most diverse set of PST producing A.minutum populations. These toxin profiles indicate that within the United Kingdom there are two populations of A.minutum grouping with strains from Northern France and Southern Ireland. There is a degree of interconnectivity in this region due tooceanic circulation and a high level of shipping andrecreational boating. Further research into theinterrelationships between the A.minutum populations in this global region would be of value.	[Lewis, Adam Michael; Coates, Lewis Nicholas; Turner, Andrew D.] Cefas, Barrack Rd, Weymouth DT48UB, Dorset, England; [Lewis, Adam Michael; Percy, Linda; Lewis, Jane] Univ Westminster, Fac Sci & Technol, 115 New Cavendish St, London W1W6UW, England	Centre for Environment Fisheries & Aquaculture Science; University of Westminster	Lewis, AM (通讯作者)，Cefas, Barrack Rd, Weymouth DT48UB, Dorset, England.; Lewis, AM (通讯作者)，Univ Westminster, Fac Sci & Technol, 115 New Cavendish St, London W1W6UW, England.	adam.lewis@cefas.co.uk	Turner, Andrew/J-5658-2015	Turner, Andrew/0000-0003-1390-0924; Lewis, Adam/0000-0001-7761-6266	Cefas Seedcorn	Cefas Seedcorn	We would like to acknowledge Cefas Seedcorn for funding this work.	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Phycol.	OCT	2018	54	5					581	598		10.1111/jpy.12768	http://dx.doi.org/10.1111/jpy.12768			18	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	GV5VD	30047623	Green Accepted			2025-03-11	WOS:000446171600001
J	Yang, Q; Jiang, ZW; Huang, CH; Zhang, RN; Li, LZ; Yang, G; Feng, LJ; Yang, GF; Zhang, H; Zhang, XL; Mu, J				Yang, Qiao; Jiang, Zhi-Wei; Huang, Cheng-Hui; Zhang, Ruo-Nan; Li, Ling-Zhi; Yang, Guang; Feng, Li-Juan; Yang, Guang-Feng; Zhang, Heng; Zhang, Xiao-Ling; Mu, Jun			<i>Hoeflea prorocentri</i> sp nov., isolated from a culture of the marine dinoflagellate <i>Prorocentrum mexicanum</i> PM01	ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY			English	Article						Hoeflea prorocentri sp; nov; Novel species; Prorocentrum mexicanum; Algal-associated bacterium	DEOXYRIBONUCLEIC-ACID; GEN. NOV.; SEQUENCES; RECLASSIFICATION; TREES	A Gram-stain negative, aerobic, rod-shaped, non-motile, yellow-pigmented and non-spore-forming bacterial strain, designated PM5-8(T), was isolated from a culture of a marine toxigenic dinoflagellate Prorocentrum mexicanum PM01. Strain PM5-8(T) grew at 15-35 degrees C (optimum, 25-30 degrees C) and pH 6-11 (optimum, 7.5-8). Cells required at least 1.5% (w/v) NaCl for growth, and can tolerate up to 7.0% with the optimum of 4%. Phylogenetic analysis based on 16S rRNA gene sequence revealed that the strain PM5-8(T) is closely related to members of the genus Hoeflea, with high sequence similarities with Hoeflea halophila JG120-1(T) (97.06%) and Hoeflea alexandrii AM1V30(T) (97.01%). DNA-DNA hybridization values between the isolate and other type strains of recognized species of the genus Hoeflea were between 11.8 and 25.2%, which is far below the value of 70% thresholdfor species delineation. The DNA G+C content was 50.3mol%. The predominant cellular fatty acids of the strain wereidentified assummed feature 8 (C(16:1)7c and/or C(16:1)6c; 51.5%), C(18:1)7c 11-methyl (20.7%), C-16:0 (17.2%) and C-18:0 (5.7%). The major respiratory quinone was Q-10. Polar lipids profiles contained phosphatidylcholine, phosphatidylglycerol, sulfoquinovosyl diacylglycerol, phosphatidylmono- methylethanolamine, phosphatidylethanolamine and four unidentified lipids. On the basis of the polyphasic taxonomic datapresented, strain PM5-8(T) (=CCTCC AB 2016294(T)=KCTC 62490(T)) represents a novel species of the genus Hoeflea, for which the name Hoeflea prorocentri sp. nov. is proposed.	[Yang, Qiao; Jiang, Zhi-Wei; Huang, Cheng-Hui; Feng, Li-Juan; Yang, Guang-Feng; Zhang, Xiao-Ling; Mu, Jun] Zhejiang Ocean Univ, Lab Marine Environm & Ecol, Coll Marine Sci & Technol, Zhoushan 316022, Peoples R China; [Zhang, Ruo-Nan] Harbin Univ Commerce, Ctr Res Life Sci & Environm Sci, Harbin 150076, Heilongjiang, Peoples R China; [Li, Ling-Zhi; Zhang, Heng] Chinese Acad Fishery Sci, East China Sea Fisheries Res Inst, Shanghai 200090, Peoples R China; [Yang, Guang-Feng] Chinese Acad Sci, Key Lab Marine Ecol & Environm Sci, Inst Oceanol, Qingdao 266071, Peoples R China	Zhejiang Ocean University; Harbin University of Commerce; Chinese Academy of Fishery Sciences; East China Sea Fisheries Research Institute, CAFS; Chinese Academy of Sciences; Institute of Oceanology, CAS	Zhang, XL; Mu, J (通讯作者)，Zhejiang Ocean Univ, Lab Marine Environm & Ecol, Coll Marine Sci & Technol, Zhoushan 316022, Peoples R China.	zhangxiaoling@zjou.edu.cn; mujun@zjou.edu.cn	阳, 广凤/ABC-9925-2022; Zhang, Heng/JXL-3857-2024	Yang, Guang-feng/0000-0002-4320-2193	Talent Introduction Foundation of Zhejiang Ocean University; National Natural Science Foundation of China [41206093, 31470540]; Zhejiang Provincial Natural Science Foundation of China [LY18D060007]; Scientific Instrument and Chemical Reagents Project of Shanghai Science and Technology Committee [15142201600]; Municipal Public Welfare Project of Zhoushan [2017C32083]	Talent Introduction Foundation of Zhejiang Ocean University; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Zhejiang Provincial Natural Science Foundation of China(Natural Science Foundation of Zhejiang Province); Scientific Instrument and Chemical Reagents Project of Shanghai Science and Technology Committee; Municipal Public Welfare Project of Zhoushan	This work was supported by Talent Introduction Foundation of Zhejiang Ocean University (for Qiao Y.), the National Natural Science Foundation of China (41206093 and 31470540), the Zhejiang Provincial Natural Science Foundation of China (LY18D060007), Scientific Instrument and Chemical Reagents Project of Shanghai Science and Technology Committee (15142201600), and Municipal Public Welfare Project of Zhoushan (2017C32083). The authors also sincerely thank Prof. Hong-Nong Chou at Institute of Fisheries Science, National Taiwan University, for kindly providing Prorocentrum mexicanum PM01.	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J	Guo, RY; Liang, YT; Xing, Y; Wang, L; Mou, SL; Cao, CJ; Xie, RZ; Zhang, CL; Tian, JW; Zhang, YY				Guo, Ruoyu; Liang, Yantao; Xing, Yu; Wang, Long; Mou, Shanli; Cao, Chunjie; Xie, Ruize; Zhang, Chuanlun; Tian, Jiwei; Zhang, Yongyu			Insight Into the Pico- and Nano-Phytoplankton Communities in the Deepest Biosphere, the Mariana Trench	FRONTIERS IN MICROBIOLOGY			English	Article						pico- and nano-phytoplankton; 18S rRNA; plastid 23S rRNA; Mariana Trench; deep sea	RIBOSOMAL-RNA GENE; DISTRIBUTION PATTERNS; CHALLENGER DEEP; MARINE CYANOBACTERIA; EUKARYOTIC ALGAE; FECAL PELLETS; GROWTH-RATE; OCEAN; DIVERSITY; PROCHLOROCOCCUS	As photoautotrophs, phytoplankton are generally present in the euphotic zone of the ocean, however, recently healthy phytoplankton cells were found to be also ubiquitous in the dark deep sea, i.e., at water depths between 2000 and 4000 m. The distributions of phytoplankton communities in much deeper waters, such as the hadal zone, are unclear. In this study, the vertical distribution of the pico- and nano-phytoplankton (PN) communities from the surface to 8320 m, including the epipelagic, mesopelagic, bathypelagic, and hadal zones, were investigated via both 18S and p23S rRNA gene analysis in the Challenger Deep of the Mariana Trench. The results showed that Dinoflagellata, Chrysophyceae, Haptophyta, Chlorophyta, Prochloraceae, Pseudanabaenaceae, Synechococcaceae, and Eustigmatophyceae, etc., were the predominant PN in the Mariana Trench. Redundancy analyses revealed that depth, followed by temperature, was the most important environmental factors correlated with vertical distribution of PN community. In the hadal zone, the PN community structure was considerably different from those in the shallower zones. Some PN communities, e.g., Eustigmatophyceae and Chrysophyceae, which have the heterotrophic characteristics, were sparse in shallower waters, while they were identified with high relative abundance (94.1% and 20.1%, respectively) at the depth of 8320 m. However, the dinoflagellates and Prochloraceae Prochlorococcus were detected throughout the entire water column. We proposed that vertical sinking, heterotrophic metabolism, and/or the transition to resting stage of phytoplankton might contribute to the presence of phytoplankton in the hadal zone. This study provided insight into the PN community in the Mariana Trench, implied the significance of phytoplankton in exporting organic matters from the euphotic to the hadal zone, and also hinted the possible existence of some undetermined energy metabolism (e.g., heterotrophy) of phytoplankton making themselves adapt and survive in the hadal environment.	[Guo, Ruoyu; Liang, Yantao; Wang, Long; Mou, Shanli; Cao, Chunjie; Xie, Ruize; Zhang, Yongyu] Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Key Lab Biofuels, Shandong Prov Key Lab Energy Genet, Qingdao, Peoples R China; [Xing, Yu; Tian, Jiwei] Ocean Univ China, Qingdao Collaborat Innovat Ctr Marine Sci & Techn, Key Lab Marine Chem Theory & Engn, Phys Oceanog Lab, Qingdao, Peoples R China; [Zhang, Chuanlun] Southern Univ Sci & Technol, Dept Ocean Sci & Engn, Shenzhen, Peoples R China	Chinese Academy of Sciences; Qingdao Institute of Bioenergy & Bioprocess Technology, CAS; Ocean University of China; Southern University of Science & Technology	Zhang, YY (通讯作者)，Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Key Lab Biofuels, Shandong Prov Key Lab Energy Genet, Qingdao, Peoples R China.; Tian, JW (通讯作者)，Ocean Univ China, Qingdao Collaborat Innovat Ctr Marine Sci & Techn, Key Lab Marine Chem Theory & Engn, Phys Oceanog Lab, Qingdao, Peoples R China.	tianjw@ouc.edu.cn; zhangyy@qibebt.ac.cn	Xing, Yu/HOF-0285-2023; Guo, Ruoyu/HTS-1354-2023	Xie, Ruize/0000-0002-9105-9141; Guo, Ruoyu/0000-0002-3625-5983	National Key Research and Development Program of China [2016YFA0601402]; Fourth Polar Observation Program (Deep Sea Exploration Program, Qingdao National Laboratory for Marine Science and Technology); open task of Qingdao National Laboratory for Marine Science and Technology [QNLM2016ORP0311]; China Postdoctoral Science Foundation [2017M610452]; Natural Science Foundation of China [41606153, 41673073, 41806172]; CNOOC Tianjin project [CNOOC-KJ 125 FZDXM 00TJ 001-2014]; senior user's project of RV KEXUE [KEXUE2018G02]; "One Three Five" research project of QIBEBT	National Key Research and Development Program of China(National Key Research & Development Program of China); Fourth Polar Observation Program (Deep Sea Exploration Program, Qingdao National Laboratory for Marine Science and Technology); open task of Qingdao National Laboratory for Marine Science and Technology; China Postdoctoral Science Foundation(China Postdoctoral Science Foundation); Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); CNOOC Tianjin project; senior user's project of RV KEXUE; "One Three Five" research project of QIBEBT	This work was supported by the National Key Research and Development Program of China (2016YFA0601402), the Fourth Polar Observation Program (i.e., Deep Sea Exploration Program, Qingdao National Laboratory for Marine Science and Technology), the open task of Qingdao National Laboratory for Marine Science and Technology (QNLM2016ORP0311), the China Postdoctoral Science Foundation funded project (2017M610452), the Natural Science Foundation of China (41606153, 41673073, and 41806172), the CNOOC Tianjin project (CNOOC-KJ 125 FZDXM 00TJ 001-2014), the senior user's project of RV KEXUE (KEXUE2018G02), and the "One Three Five" research project of QIBEBT. This study was a contribution to the international IMBER project.	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Microbiol.	SEP 26	2018	9								2289	10.3389/fmicb.2018.02289	http://dx.doi.org/10.3389/fmicb.2018.02289			14	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	GU9CF	30319587	Green Published, gold			2025-03-11	WOS:000445641400001
J	Spilling, K; Olli, K; Lehtoranta, J; Kremp, A; Tedesco, L; Tamelander, T; Klais, R; Peltonen, H; Tamminen, T				Spilling, Kristian; Olli, Kalle; Lehtoranta, Jouni; Kremp, Anke; Tedesco, Letizia; Tamelander, Tobias; Klais, Riina; Peltonen, Heikki; Tamminen, Timo			Shifting Diatom-Dinoflagellate Dominance During Spring Bloom in the Baltic Sea and its Potential Effects on Biogeochemical Cycling	FRONTIERS IN MARINE SCIENCE			English	Review						eutrophication; pelagic-benthic coupling; ecosystem functioning; community composition; plankton sedimentation; carbon sink	DISSOLVED ORGANIC-MATTER; PERIDINIELLA-CATENATA DINOPHYCEAE; PHYTOPLANKTON COMMUNITY STRUCTURE; BASIN-SCALE CHANGES; SCRIPPSIELLA-HANGOEI; CLIMATE-CHANGE; VERNAL BLOOM; MARINE DINOFLAGELLATE; VERTICAL-DISTRIBUTION; CYANOBACTERIA BLOOMS	The Baltic Sea is affected by a range of human induced environmental pressures such as eutrophication. Here we synthesize the ongoing shift from diatom dominance toward more dinoflagellates in parts of the Baltic Sea during the spring bloom and its potential effects on biogeochemical cycling of key elements (e.g., C, N, and P). The spring bloom is the period with the highest annual primary production and sinking of organic matter to the sediment. The fate of this organic matter is a key driver for material fluxes, affecting ecosystem functioning and eutrophication feedback loops. The dominant diatoms and dinoflagellates appear to be functionally surrogates as both groups are able to effectively exhaust the wintertime accumulation of inorganic nutrients and produce bloom level biomass that contribute to vertical export of organic matter. However, the groups have very different sedimentation patterns, and the seafloor has variable potential to mineralize the settled biomass in the different sub-basins. While diatoms sink quickly out of the euphotic zone, dinoflagellates sink as inert resting cysts, or lyse in the water column contributing to slowly settling phyto-detritus. The dominance by either phytoplankton group thus directly affects both the summertime nutrient pools of the water column and the input of organic matter to the sediment but to contrasting directions. The proliferation of dinoflagellates with high encystment efficiency could increase sediment retention and burial of organic matter, alleviating the eutrophication problem and improve the environmental status of the Baltic Sea.	[Spilling, Kristian; Lehtoranta, Jouni; Kremp, Anke; Tedesco, Letizia; Peltonen, Heikki; Tamminen, Timo] Finnish Environm Inst SYKE, Helsinki, Finland; [Spilling, Kristian; Tamelander, Tobias] Univ Helsinki, Fac Biol & Environm Sci, Tvarminne Zool Stn, Hango, Finland; [Olli, Kalle; Klais, Riina] Univ Tartu, Inst Ecol & Earth Sci, Tartu, Estonia; [Olli, Kalle] Estonian Univ Life Sci, Inst Agr & Environm Sci, Tartu, Estonia	Finnish Environment Institute; University of Helsinki; University of Tartu; Tartu University Institute of Ecology & Earth Sciences; Estonian University of Life Sciences	Spilling, K (通讯作者)，Finnish Environm Inst SYKE, Helsinki, Finland.; Spilling, K (通讯作者)，Univ Helsinki, Fac Biol & Environm Sci, Tvarminne Zool Stn, Hango, Finland.	kristian.spilling@environment.fi	Olli, Kalle/G-5389-2010; Spilling, Kristian/KEH-0764-2024; Tedesco, Letizia/B-2884-2013	Peltonen, Heikki/0000-0001-9056-8342; Lehtoranta, Jouni/0000-0003-0853-7331; Tedesco, Letizia/0000-0001-9051-8177	Academy of Finland [259164, 263376]; Estonian Research Council [1575P]; Walter and Andree de Nottbeck Foundation; Swedish Cultural Heritage; COCOA-Nutrient cocktail in coastal zones of the Baltic Sea-EU BONUS project; Academy of Finland (AKA) [263376, 259164] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Estonian Research Council(Estonian Research Council); Walter and Andree de Nottbeck Foundation; Swedish Cultural Heritage; COCOA-Nutrient cocktail in coastal zones of the Baltic Sea-EU BONUS project; Academy of Finland (AKA)(Research Council of Finland)	This study was supported by the Academy of Finland (decisions no 259164 and 263376) and Estonian Research Council (no 1575P, KO). Further funding came from Walter and Andree de Nottbeck Foundation (KS and ToT) and the Swedish Cultural Heritage (ToT). LT acknowledges support also from COCOA-Nutrient cocktail in coastal zones of the Baltic Sea-EU BONUS project.	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J	Mohamed, ZA				Mohamed, Zakaria A.			Potentially harmful microalgae and algal blooms in the Red Sea: Current knowledge and research needs	MARINE ENVIRONMENTAL RESEARCH			English	Article						Harmful algae; Cyanobacteria; Red sea; Phycotoxins; Blooms	YEMENI COASTAL WATERS; 1ST RECORDED BLOOM; DINOFLAGELLATE CYSTS; MARINE-SEDIMENTS; SAUDI-ARABIA; PHYTOPLANKTON; GULF; CHLOROPHYLL; AQABA; CYANOBACTERIA	Harmful algal blooms (HABs) have increased throughout the world's coastal oceans during the last century mostly due to water eutrophication and climate change. These blooms are often accompanied by extreme extensive negative impacts to fisheries, coastal resources, public health and local economies, However, limited studies have reported HAB events in Red Sea coastal waters. This article reviews potentially harmful microalgae in the Red Sea, based on available published information during the last 3 decades. Five harmful algal blooms were recorded in the Red Sea; of which 3 blooms are formed by dinoflagellates (Noctiluca scintillans, Pyrodinuium bahamense, Protoperidinium quinquecorne), one by raphidophytes (Heterosigma akashiwo) and one by cyanobacteria (Trichodesmium erythraeum). Additionally, mangrove swamps in the Red Sea were occupied by cyanobacterial mats, which contain microcystin and saxitoxin-producing species. The existing data in this review could be a catalyst for the establishment of monitoring and management program for HABs and their toxins in Red Sea coastal waters. This review also identifies current research gaps and suggests future research directions.	[Mohamed, Zakaria A.] Sohag Univ, Fac Sci, Dept Bot & Microbiol, Sohag 82524, Egypt	Egyptian Knowledge Bank (EKB); Sohag University	Mohamed, ZA (通讯作者)，Sohag Univ, Fac Sci, Dept Bot & Microbiol, Sohag 82524, Egypt.	mzakaria_99@yahoo.com						Abd-Elhaleem Z. 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J	Zonneveld, KAF; Ebersbach, F; Maeke, M; Versteegh, GJM				Zonneveld, Karin A. F.; Ebersbach, Friederike; Maeke, Mara; Versteegh, Gerard J. M.			Transport of organic-walled dinoflagellate cysts in nepheloid layers off Cape Blanc (N-W Africa)	DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS			English	Article						Dinoflagellate cysts; Particle transport; Nepheloid layer	SANTA-BARBARA BASIN; SEDIMENT RESUSPENSION; ENVIRONMENTAL-CHANGE; AEROBIC DEGRADATION; CLIMATE VARIABILITY; UPWELLING SYSTEM; NORTH-ATLANTIC; MATTER; RECORD; OCEAN	Many aspects of to the vertical and lateral transport of organic matter particles produced in the upper ocean are still not clear. This study documents the production, vertical and lateral displacement of the particulate organic matter fraction formed by dinoflagellate cysts in nepheloid layers present off Cape Blanc in November 2015. The position and extent of cyst production in the upper water column has been assessed by collecting the export rain of cysts with floating sediment traps. This has been compared to cyst associations in different intermediate nepheloid layers in the water column along two onshore-offshore transects. We document that highest cyst export production took place at the rim of a newly formed upwelling eddy/filament. We observed lateral transport up to 130 km off the shelf break into the deeper ocean in the bottom nepheloid layers (BNL) and in intermediate nepheloid layer (INL). The depth of the INL gradually increased from 600 m closest to the shelf break to 1300 m at the most offshore station. Transport in the BNL was observed in the more onshore part between 750 and 2300 m water depth. Cyst associations in both layers were comparable, indicating a common source. The large abundance of living cysts in these layers suggest that this source had a recent origin rather than being the result of resuspension of older sediment. The cyst associations of these samples differed from those of a second INL deeper in the water column as well as from samples from the more offshore part of the BNL. This indicates that the particles in this deeper INL and the offshore part of the BNL had a different origin. This origin could not be identified therefore no conclusions were drawn with respect to the extent to which these particles have been transported vertically or laterally. The cyst associations in the surface sediments differed from those of the nepholoid layers and the upper water column and did not reflect the effects of lateral transport as registered from the water column. The surface sediments contained a higher proportion of cysts that are highly resistant to aerobic degradation than the samples from the water column. This indicates that the former were modified predominantly by species-specific post depositional degradation. Selective degradation altering the cyst associations was not observed for the nepheloid layers.	[Zonneveld, Karin A. F.; Ebersbach, Friederike; Maeke, Mara] Univ Bremen, MARUM Fachbereich Geowissensch 5, Leobener Str 15, D-28334 Bremen, Germany; [Versteegh, Gerard J. M.] Heimholz Zentrum Polar & Meeresforschung, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany	University of Bremen; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Zonneveld, KAF (通讯作者)，Univ Bremen, MARUM Fachbereich Geowissensch 5, Leobener Str 15, D-28334 Bremen, Germany.	zonnev@uni-bremen.de	Versteegh, Gerard J.M./H-2119-2011	Versteegh, Gerard J.M./0000-0002-9320-3776	Senatskomission for Ozeanographie (DFG Germany)	Senatskomission for Ozeanographie (DFG Germany)	This study has been performed with financial support of the Senatskomission for Ozeanographie (DFG Germany). Captain Ralf Schmidt and his crew of the RV. Maria S. Merian are thanked for the professional and constructive cooperation that greatly contributed to the success of this cruise. Dr. Barbara Donner and Dr. Morten Iversen are greatly thanked for the critical reading of earlier versions of this manuscript, their general support and helpful suggestions during and after the cruise. We thank also the associated editor and two anonymous reviewers for their constructive comments on an earlier version of this manuscript.	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J	Cruz-López, R; Maske, H; Yarimizu, K; Holland, NA				Cruz-Lopez, Ricardo; Maske, Helmut; Yarimizu, Kyoko; Holland, Neal A.			The B-Vitamin Mutualism Between the Dinoflagellate <i>Lingulodinium polyedrum</i> and the Bacterium <i>Dinoroseobacter shibae</i>	FRONTIERS IN MARINE SCIENCE			English	Article						B vitamin auxotrophy; growth limitation; Dinoflagellate-bacteria interactions; dissolved B-12; particulate B-12; particulate B-7	CYST FORMATION; SP-NOV.; BLOOM DYNAMICS; HIROSHIMA BAY; DINOPHYCEAE; B-12; PHYTOPLANKTON; ALGAE; GROWTH; CYANOBACTERIA	Recent research has shown that in aquatic systems pairs of prokaryote and eukaryote species exercise symbiotic exchanges of metabolites that are essential for the proliferation of either species. Using dinoflagellate Lingulodinium polyedrum cultures and a factorial design, we examined its growth at different concentrations of vitamin B-1 (thiamine) and B-12 (cobalamin). When both vitamins were at their lowest concentrations tested, 0.033 pM of B1 and 0.053 pM of B-12 the growth was limited. When axenic L. polyedrum was co-cultured with the bacterium Dinoroseobacter shibae, a known B-1 and B-12 producer, then L. polyedrum grew at the same rate as in culture media supplemented with B-1 and B-12. In the L. polyedrum vitamin-limited culture (V-L), the abundance of attached and free-living D. shibae was higher than in the vitamin-replete (V-R) culture. In the V-R and V-L co-cultures the measured particulate B-12 (PB12) concentration of attached and free-living D. shibae were in the range of 4.7 x 10(-18) to 3 x 10(-18) and 8.4 x 10(-21) to1.2 x 10(-19) (mol cell(-1)), respectively. Without B-12 or B-7 (biotin) added to the culture medium of a co-culture of L. polyedrum and D. shibae, the measured dissolved B-12 (dB(12)) concentration was more than 60 pM higher than necessary for un-limited growth rates of L. polyedrum. In the same culture we measured B-7 in the L. polyedrum particulate fraction (pB7; 4.7 x 10(-19) to 9.4 x 10(-19) mol cell(-1)). We suggest that in response to the production of B-1 and B-12 by D. shibae to supply L. polyedrum requeriments, the latter produced B-7, which is required by D. shibae, and in our culture was only produced by L. polyedrum when D. shibae was present. We propose that D. shibae can control L. polyedrum through the release of B-1 and B-12, and L. polyedrum can control D. shibae through the release of B-7. D. shibae is also auxotroph for niacin and 4-amino-benzoic acid, not provided by the culture medium. Therefore, L. polyedrum might affect a similar control through the release of these specific compounds and organic substrate necessary for the growth of D. shibae.	[Cruz-Lopez, Ricardo; Maske, Helmut] CICESE, Oceanog Biol, Ensenada, Baja California, Mexico; [Cruz-Lopez, Ricardo; Yarimizu, Kyoko; Holland, Neal A.] San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA	CICESE - Centro de Investigacion Cientifica y de Educacion Superior de Ensenada; California State University System; San Diego State University	Cruz-López, R (通讯作者)，CICESE, Oceanog Biol, Ensenada, Baja California, Mexico.; Cruz-López, R (通讯作者)，San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA.	ricardo.crlp@gmail.com	Yarimizu, Kyoko/GPX-1849-2022	Yarimizu, Kyoko/0000-0001-7492-6592; Cruz-Lopez, Ricardo/0000-0002-4782-7625	National Council of Science and Technology (CONACyT-Mexico) [CB-2008-01 106003]	National Council of Science and Technology (CONACyT-Mexico)(Consejo Nacional de Ciencia y Tecnologia (CONACyT))	This work was partially supported by the National Council of Science and Technology (CONACyT-Mexico) project CB-2008-01 106003 (to HM), a Ph.D. scholarship, and a Postdoctoral fellowship for overseas to RCL (CONACyT-Mexico). Additionally, we would like to thank Avery O. Tatters (University of Southern California) for kindly providing the L. polyedrum strain and Prof. Carl J. Carrano (San Diego State University) for allowing us to use his laboratory to prepare samples. We would like to show our gratitude to Sharon and Christopher A. Rhodes, the owners of Drug Delivery Experts LLC., for allowing us to use their facility to generate LC-MS data. Finally, we would like to thank the reviewers for constructive comments and suggestions.	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Mar. Sci.	AUG 28	2018	5								274	10.3389/fmars.2018.00274	http://dx.doi.org/10.3389/fmars.2018.00274			12	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	HJ7GX		gold			2025-03-11	WOS:000457365000001
J	Lozano-Cobo, H; Gómez-Gutiérrez, J; Franco-Gordo, C; del Prado-Rosas, MDG; Plascencia-Palomera, V; Ambriz-Arreola, I				Lozano-Cobo, Horacio; Gomez-Gutierrez, Jaime; Franco-Gordo, Carmen; del Carmen Gomez del Prado-Rosas, Maria; Plascencia-Palomera, Viridiana; Ambriz-Arreola, Israel			Changes in parasite-chaetognath species assemblages in the Mexican Central Pacific before and during El Nino 1997-1998	DISEASES OF AQUATIC ORGANISMS			English	Article						Protists; Platyhelminthes; Acanthocephalans; Nematodes; Larval stages; Infracommunity; Component community	GULF-OF-CALIFORNIA; WATER MASSES; 1ST RECORD; COAST; ABUNDANCE; ASSOCIATION; TREMATODES; EVOLUTION	We investigated the seasonal and interannual changes in diversity, abundance, and prevalence of chaetognaths and their parasites collected monthly during 1996-1998 in the Mexican Central Pacific. We tested the hypothesis of a positive relationship between abundance and species richness of chaetognaths and their parasites, and investigated the influence of the 19971998 El Nino event on this host-parasite interaction. Of the 9 chaetognath species collected in the present study, only 7 were found to be parasitized. Of 78 154 chaetognath specimens collected, 790 were parasitized (1% prevalence) with at least 1 type of epibiont (cysts, perhaps protists) and 6 types of endoparasites: protists (apicomplexans, dinoflagellates, and ciliates), digeneans, cestodes, acanthocephalans, nematodes, and other unidentified endoparasites. Cysts, digeneans, and cestodes were the most abundant parasites. Mean intensity ranged from 1-4 endoparasites and from 1-21 epibionts host(-1). Zonosagitta bedoti and Flaccisagitta enflata were the most abundant chae-tognath species and had the highest parasite diversity. Mesosagitta minima and Para sagitta euneritica had the highest parasite prevalence (>2%). A 2-way cluster analysis defined sampling month groups as before, during, and after the 1997-1998 El Nino. The highest abundances of chaetognaths and parasites were associated with a high thermal stratification index, salinity, and mixed layer depth. We conclude that there is a positive, non-linear correlation between the abundance of chaetognaths and their parasites. Although El Nino decreased the abundance and diversity of chaetognaths throughout the time series, the abundance and diversity of their parasites were not significantly different among hydro-climatic periods, suggesting that host abundance must decrease orders of magnitude to influence host availability for parasites.	[Lozano-Cobo, Horacio; Gomez-Gutierrez, Jaime] Inst Politecn Nacl, Dept Plancton & Ecol Marina, Ctr Interdisciplinario Ciencias Marinas, Av IPN S-N, La Paz 23096, Bcs, Mexico; [Franco-Gordo, Carmen; Plascencia-Palomera, Viridiana; Ambriz-Arreola, Israel] Univ Guadalajara, Dept Estudios Desarrollo Sustentable Zonas Coster, Ctr Univ Costa Sur, Gomez Farias 82, San Patricio Melaque 48980, Jalisco, Mexico; [del Carmen Gomez del Prado-Rosas, Maria] Univ Autonoma Baja California Sur, Dept Acad Ciencias Mar & Tierra, Lab Parasitol, Apdo Postal 19-B, La Paz 23080, Bcs, Mexico	Instituto Politecnico Nacional - Mexico; Universidad de Guadalajara; Universidad Autonoma de Baja California	Gómez-Gutiérrez, J (通讯作者)，Inst Politecn Nacl, Dept Plancton & Ecol Marina, Ctr Interdisciplinario Ciencias Marinas, Av IPN S-N, La Paz 23096, Bcs, Mexico.	jgomezgu@gmail.com		Lozano-Cobo, Horacio/0000-0002-2461-3042; Carmen, Franco-Gordo/0000-0001-9274-4020	University of Guadalajara; Consejo Nacional de Ciencia y Tecnologia (CONACYT) [A140618]; PIFI-IPN [SIP20110012]; BEIFI-IPN [SIP20140497, 20150113, 20171275]; SIP-IPN annual grants [20150113, 20171275, 20110012, 20120948, 20130224, 20140497, 20160495]; SEP-CONACyT Ciencia Basica [2012-01-178615, 2016-01-284201]	University of Guadalajara; Consejo Nacional de Ciencia y Tecnologia (CONACYT)(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); PIFI-IPN; BEIFI-IPN; SIP-IPN annual grants; SEP-CONACyT Ciencia Basica	The University of Guadalajara provided research funds. We thank Ariel Cruz-Villacorta (CIBNOR) for his technical help with the SEM observations. Consejo Nacional de Ciencia y Tecnologia (CONACYT) (A140618), PIFI-IPN (SIP20110012), BEIFI-IPN (SIP20140497, 20150113, 20171275) provided PhD financial support to H.L.C. Funding for zooplankton analysis was provided by SIP-IPN annual grants (20110012, 20120948, 20130224, 20140497, 20150113, 20160495, 20171275) and SEP-CONACyT Ciencia Basica 2012-01-178615, 2016-01-284201. C.F.G., I.A.A., and J.G.G. are SNI fellows, and J.G.G. is also a COFFA-IPN and EDI-IPN fellow. We thank Eva Kozak for English editorial help on an earlier version of the manuscript.	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Aquat. Org.	AUG 14	2018	129	3					215	238		10.3354/dao03245	http://dx.doi.org/10.3354/dao03245			24	Fisheries; Veterinary Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries; Veterinary Sciences	GV8DS	30154282	Bronze			2025-03-11	WOS:000446367300007
J	Padmakumar, KB; Thomas, LC; Salini, TC; Vijayan, A; Sudhakar, M				Padmakumar, K. B.; Thomas, Lathika Cicily; Salini, T. C.; Vijayan, Anilkumar; Sudhakar, M.			Subsurface bloom of dinoflagellate <i>Gonyaulax polygramma</i> Stein in the shelf waters off Mangalore-South Eastern Arabian Sea	INDIAN JOURNAL OF GEO-MARINE SCIENCES			English	Article						Gonyaulax polygramma; Harmful Algal Blooms; Ecdysis cysts; Water column stability; South Eastern Arabian Sea	RED-TIDE; WEST-COAST; PHYTOPLANKTON; MORTALITY; FISH	A monospecific bloom of thecate dinoflagellate Gonyaulax polygramma (5x 10(8) cells L-1) was observed from the shelf waters off Mangalore (South Eastern Arabian Sea) during late summer monsoon. The bloom was observed to be subsurface (similar to 5m depth) with chlorophyll a maxima of 13.15 mu g L-1 The species observed to be photosynthetic and no visible food vacuoles were observed within the cell. Water column stability with sufficient inorganic nutrients during the fag end of summer monsoon might have favoured the bloom species. The region observed complete exclusion of zooplankton and can suggestively due to unpalatability of the bloom species.	[Padmakumar, K. B.; Salini, T. C.; Vijayan, Anilkumar; Sudhakar, M.] Minist Earth Sci, Ctr Marine Living Resources & Ecol, Kochi 37, Kerala, India; [Padmakumar, K. B.; Thomas, Lathika Cicily] CUSAT, Sch Marine Sci, Dept Marine Biol Microbiol & Biochem, Kochi 16, Kerala, India	Ministry of Earth Sciences (MoES) - India; Centre for Marine Living Resources & Ecology (CMLRE); Cochin University Science & Technology	Padmakumar, KB (通讯作者)，Minist Earth Sci, Ctr Marine Living Resources & Ecol, Kochi 37, Kerala, India.; Padmakumar, KB (通讯作者)，CUSAT, Sch Marine Sci, Dept Marine Biol Microbiol & Biochem, Kochi 16, Kerala, India.	kbpadmakumar@gmail.com	Vijayan, Anil/V-9755-2019; KB, Padmakumar/AAJ-1065-2021					ALLEN WINFRED EMORY, 1935, ANN LARD BOT BUITENZORG, V44, P101; ANDERSON DM, 1984, J PHYCOL, V20, P418, DOI 10.1111/j.0022-3646.1984.00418.x; [Anonymous], 1994, IOC MAN GUID 29 UNES; BHIMACHAR B. S., 1950, PROC INDIAN ACAD SCI SECT B, V31, P339; Bravo Isabel, 2014, Microorganisms, V2, P11; 조은섭, 2011, [JOURNAL OF ENVIRONMENTAL SCIENCE INTERNATIONAL, 한국환경과학회지], V20, P1521; Eppley R. W, 1974, P 1 INT C TOX DIN BL, P11; Goswami SC., 2004, Zooplankton methodology, collection and identification a field maual NIO, P16; HALLEGRAEFF GM, 1993, PHYCOLOGIA, V32, P79, DOI 10.2216/i0031-8884-32-2-79.1; Jeong HJ, 2005, AQUAT MICROB ECOL, V38, P249, DOI 10.3354/ame038249; Jugnu R, 2008, MARINE FISHERIES INF; Karlson B., 2010, IOC manuals and guides no 55; Karunasagar Iddya, 1992, Journal of Shellfish Research, V11, P477; KATTI RJ, 1988, CURR SCI INDIA, V57, P380; Koizumi Y, 1996, NIPPON SUISAN GAKK, V62, P217; Krishnakumar PK, 2008, FISH OCEANOGR, V17, P45, DOI 10.1111/j.1365-2419.2007.00455.x; Kudela Raphael, 2005, Oceanography, V18, P184; Lewis E. J., 1965, PROCEEDING SEMINAR S, P224; MARGALEF R, 1978, OCEANOL ACTA, V1, P493; Naqvi SWA, 1998, CURR SCI INDIA, V75, P543; Nayak BB, 2000, INDIAN J MAR SCI, V29, P139; Nishikawa T., 1901, ANNOT ZOOL JAPON, V4, P31, DOI 10.34434/za000041; Padmakumar K. B., 2011, International Journal of Biosciences (IJB), V1, P57; Padmakumar K.B., 2012, INT J OCEANOGR, V2012, P1, DOI [10.1155/2012/263946, DOI 10.1155/2012/263946]; Padmakumar K. B., 2010, THESIS; PAERL HW, 1988, LIMNOL OCEANOGR, V33, P823, DOI 10.4319/lo.1988.33.4_part_2.0823; Parsons R.T., 1984, A manual of chemical and biological methods for seawater analysis, V1st, P173; Pitcher GC, 1998, MAR ECOL PROG SER, V172, P253, DOI 10.3354/meps172253; Pond S., 1993, INTRO DYNAMIC OCEANO, P240; PRAKASH A, 1964, CURR SCI INDIA, V33, P168; Reid F. M. H, 1970, Bull. Scripps Instn Oceanogr. tech. Ser., V17, P51; Silva MSD, 2011, INDIAN J GEO-MAR SCI, V40, P697; Smayda Theodore J., 2002, Harmful Algae, V1, P95, DOI 10.1016/S1568-9883(02)00010-0; STEIDINGER KA, 1981, BIOSCIENCE, V31, P814, DOI 10.2307/1308678; THRONDSEN J, 1973, Norwegian Journal of Zoology, V21, P193; TOMAS C.R., 1997, IDENTIFYING MARINE P, P858; Winkler L.W., 1988, BER DTSCHE CHEM GES, V21, P2843, DOI DOI 10.1002/CBER.188802102122; Wyatt T, 2014, DEEP-SEA RES PT II, V101, P32, DOI 10.1016/j.dsr2.2012.12.006; Yamamoto Tamiji, 1997, Bulletin of the Japanese Society of Fisheries Oceanography, V61, P114	39	11	11	0	6	NATL INST SCIENCE COMMUNICATION-NISCAIR	NEW DELHI	DR K S KRISHNAN MARG, PUSA CAMPUS, NEW DELHI 110 012, INDIA	0379-5136	0975-1033		INDIAN J GEO-MAR SCI	Indian J. Geo-Mar. Sci.	AUG	2018	47	8					1658	1664						7	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	HC4QQ					2025-03-11	WOS:000451789700018
J	Tesson, SVM; Weissbach, A; Kremp, A; Lindström, Å; Rengefors, K				Tesson, Sylvie V. M.; Weissbach, Astrid; Kremp, Anke; Lindstrom, Ake; Rengefors, Karin			The potential for dispersal of microalgal resting cysts by migratory birds	JOURNAL OF PHYCOLOGY			English	Article						Apocalathium malmogiense; dinoflagellate cysts; endozoochory; microorganism dispersal; Peridiniopsis borgei	FRESH-WATER ALGAE; AQUATIC ORGANISMS; DINOFLAGELLATE CYSTS; SPRING BLOOM; GREEN-ALGAE; VIABILITY; MARINE; GERMINATION; DUCKS; FLOW	Most microalgal species are geographically widespread, but little is known about how they are dispersed. One potential mechanism for long-distance dispersal is through birds, which may transport cells internally (endozoochory) and deposit them during, or in-between, their migratory stopovers. We hypothesize that dinoflagellates, in particular resting stages, can tolerate bird digestion; that bird temperature, acidity, and retention time negatively affect dinoflagellate viability; and that recovered cysts can germinate after passage through the birds' gut, contributing to species-specific dispersal of the dinoflagellates across scales. Tolerance of two dinoflagellate species (Peridiniopsis borgei, a warm-water species and Apocalathium malmogiense, a cold-water species) to Mallard gut passage was investigated using invitro experiments simulating the gizzard and caeca conditions. The effect of invitro digestion and retention time on cell integrity, cell viability, and germination capacity of the dinoflagellate species was examined targeting both their vegetative and resting stages. Resting stages (cysts) of both species were able to survive simulated bird gut passage, even if their survival rate and germination were negatively affected by exposure to acidic condition and bird internal temperature. Cysts of A.malmogiense were more sensitive than P.borgei to treatments and to the presence of digestive enzymes. Vegetative cells did not survive conditions of bird internal temperature and formed pellicle cysts when exposed to gizzard-like acid conditions. We show that dinoflagellate resting cysts serve as dispersal propagules through migratory birds. Assuming a retention time of viable cysts of 2-12h to duck stomach conditions, cysts could be dispersed 150-800km and beyond.	[Tesson, Sylvie V. M.; Weissbach, Astrid; Lindstrom, Ake; Rengefors, Karin] Lund Univ, Dept Biol, SE-22362 Lund, Sweden; [Kremp, Anke] Finnish Environm Inst, Marine Res Ctr, FI-00560 Helsinki, Finland	Lund University; Finnish Environment Institute	Tesson, SVM (通讯作者)，Lund Univ, Dept Biol, SE-22362 Lund, Sweden.	tesson.sylvie.vm@gmail.com	Rengefors, Karin/K-5873-2019; Tesson, Sylvie VM/D-9018-2015	Tesson, Sylvie VM/0000-0002-0751-6953; Rengefors, Karin/0000-0001-6297-9734	Ebba och Sven Schwarz Stiftelse; Walter and Andree de Nottbeck Foundation; Sven och Lilly Lawski Foundation	Ebba och Sven Schwarz Stiftelse; Walter and Andree de Nottbeck Foundation; Sven och Lilly Lawski Foundation	Economic support was provided by Ebba och Sven Schwarz Stiftelse to K.R., by Walter and Andree de Nottbeck Foundation to A.K. and by Sven och Lilly Lawski Foundation to S.T. The authors declare no conflict of interest.	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Phycol.	AUG	2018	54	4					518	528		10.1111/jpy.12756	http://dx.doi.org/10.1111/jpy.12756			11	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	GQ6UC	29889985				2025-03-11	WOS:000441860300009
J	Kubiszyn, AM; Svensen, C				Kubiszyn, Anna M.; Svensen, Camilla			First record of a rare species, <i>Polyasterias problematica</i> (Prasinophyceae), in Balsfjord, northern Norway	BOTANICA MARINA			English	Article						Balsfjord; northern Norway; planktonic protists; Polyasterias problematica; Prasinophyceae	DINOFLAGELLATE CYSTS; BLACK-SEA; PHYTOPLANKTON 1976-1978; PLANKTON COMMUNITY; SEDIMENTS; ASSEMBLAGES; ABUNDANCE; DYNAMICS; SUMMER; QUEBEC	Polyasterias problematica is a poorly investigated prasinophyte species, practically known only from a few, primarily historical studies. Fragmentary information on the species indicates that P. problematica is mainly distributed in the euphotic zone of the Canadian and Russian Arctic, Atlantic Canada, the mid-Atlantic and some European seas. Here, we present the first record of this species in the Balsfjord waters, northern Norway. A detailed morphological description, with line drawings and microscopy-based photographs, as well as information on its up-to-date geographical distribution and possible explanations for its extraordinary scarcity are provided.	[Kubiszyn, Anna M.] Polish Acad Sci, Ctr Polar Studies KNOW, Leading Natl Res Ctr, Dept Marine Ecol,Inst Oceanol, Powstancow Warszawy 55, PL-81712 Sopot, Poland; [Svensen, Camilla] UiT Arctic Univ Tromso, Fac Biosci Fisheries & Econ, Dept Arctic & Marine Biol, N-9037 Tromso, Norway	Polish Academy of Sciences; Institute of Oceanology of the Polish Academy of Sciences; UiT The Arctic University of Tromso	Kubiszyn, AM (通讯作者)，Polish Acad Sci, Ctr Polar Studies KNOW, Leading Natl Res Ctr, Dept Marine Ecol,Inst Oceanol, Powstancow Warszawy 55, PL-81712 Sopot, Poland.	aniak@iopan.gda.pl	Svensen, Camilla/AAH-3234-2020	Dabrowska (Kubiszyn), Anna/0000-0002-0911-3082	Fram Centre flagship "Fjord and Coast"; Let's Sea project [2015/17/N/NZ8/01642]; AREX project [W12/Norway/2016]; Leading National Research Centre (KNOW)	Fram Centre flagship "Fjord and Coast"; Let's Sea project; AREX project; Leading National Research Centre (KNOW)	We would like to thank two anonymous reviewers for their constructive comments and the editor Dr. Michel Poulin for his thorough review of the manuscript. We also thank professor Jozef Maria Wiktor (Institute of Oceanology Polish Academy of Sciences) for protist taxonomic consultations and comments on the manuscript, as well as Wiola Rasmus (Max Planck Institute for Evolutionary Biology) for preparing the line drawings. This study was funded by The Fram Centre flagship "Fjord and Coast" and was implemented with the support of the Let's Sea (2015/17/N/NZ8/01642) and AREX (W12/Norway/2016) projects. The publication has been financed from the funds of the Leading National Research Centre (KNOW) received by the Centre for Polar Studies for the period 2014-2018.	ANDERSON JT, 1980, CAN J FISH AQUAT SCI, V37, P2242, DOI 10.1139/f80-269; [Anonymous], 1958, Mitt. Int. Ver. Theor. Angew. Limnol., DOI DOI 10.1080/05384680.1958.11904091; Bech P. A., 1982, THESIS, P130; Berard-Therriault L., 1999, Publ spec can sci halieut aquat, V128, P1; Bergins B. V. A., 1932, Folia Zoologica et Hydrobiologica Riga, V4, P68; Bringue M. 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Marina	AUG	2018	61	4					421	428		10.1515/bot-2017-0123	http://dx.doi.org/10.1515/bot-2017-0123			8	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	GO4WF		Green Submitted			2025-03-11	WOS:000440017400011
J	Jiang, HS; Kulis, DM; Brosnahan, ML; Anderson, DM				Jiang, Houshuo; Kulis, David M.; Brosnahan, Michael L.; Anderson, Donald M.			Behavioral and mechanistic characteristics of the predator-prey interaction between the dinoflagellate <i>Dinophysis acuminata</i> and the ciliate <i>Mesodinium rubrum</i>	HARMFUL ALGAE			English	Article						Dinophysis acuminate; Mesodinium rubrum; Predator-prey interaction behavior; High-speed microscale imaging system (HSMIS); Quantitative microvideography; Diarrhetic shellfish poisoning (DSP)	THIN-LAYERS; CAPTURE; CULTURE; TOXINS; BLOOM; FATE; SPP.	Predator-prey interactions of planktonic protists are fundamental to plankton dynamics and include prey selection, detection, and capture as well as predator detection and avoidance. Propulsive, morphology-specific behaviors modulate these interactions and therefore bloom dynamics. Here, interactions between the mixo-trophic, harmful algal bloom (HAB) dinoflagellate Dinophysis acuminata and its ciliate prey Mesodinium rubrwn were investigated through quantitative microvideography using a high-speed microscale imaging system (HSMIS). The dinoflagellate D. acuminate is shown to detect its M. rubrwn prey via chemoreception while M. rubrum is alerted to D. acurninata via mechanoreception at much shorter distances (89 +/- 39 mu m versus 41 +/- 32 mu m). On detection, D. acuminata approaches M. rubrum with reduced speed. The ciliate M. rubrum responds through escape jumps that are long enough to detach its chemical trail from its surface, thereby disorienting the predator. To prevail, D. acuminata uses capture filaments and/or releases mucus to slow and eventually immobilize M. rubrum cells for easier capture. Mechanistically, results support the notion that the desmokont flagellar arrangement of D. acuminata lends itself to phagotrophy. In particular, the longitudinal flagellum plays a dominant role in generating thrust for the cell to swim forward, while at other times, it beats to supply a tethering or anchoring force to aid the generation of a posteriorly-directed, cone-shaped scanning current by the transverse flagellum. The latter is strategically positioned to generate flow for enhanced chemoreception and hydrodynamic camouflage, such that D. acuminata can detect and stealthily approach resting M. rubrum cells in the water column.	[Jiang, Houshuo] Woods Hole Oceanog Inst, Dept Appl Ocean Phys & Engn, Woods Hole, MA 02543 USA; [Kulis, David M.; Brosnahan, Michael L.; Anderson, Donald M.] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA	Woods Hole Oceanographic Institution; Woods Hole Oceanographic Institution	Jiang, HS (通讯作者)，Woods Hole Oceanog Inst, Dept Appl Ocean Phys & Engn, Woods Hole, MA 02543 USA.	hsjiang@whoi.edu		Brosnahan, Michael/0000-0002-2620-7638	National Science Foundation (NSF) [OCE-1559062]; Woods Hole Oceanographic Institution; NSF [OCE-1433979, OCE-1129496]; National Science Foundation [OCE-0850421, OCE-0430724, OCE-0911031, OCE-1314642]; National Institutes of Health through the Woods Hole Center for Oceans and Human Health [NIEHS-1P50-ES021923-01]	National Science Foundation (NSF)(National Science Foundation (NSF)); Woods Hole Oceanographic Institution; NSF(National Science Foundation (NSF)); National Science Foundation(National Science Foundation (NSF)); National Institutes of Health through the Woods Hole Center for Oceans and Human Health	This work was financially supported by National Science Foundation (NSF) grant OCE-1559062 and a Woods Hole Oceanographic Institution - 2014 Interdisciplinary Study Award. H.J. was also supported by NSF grants OCE-1433979 and OCE-1129496. D.M.A. and M.L.B. were also supported by National Science Foundation (Grants OCE-0850421, OCE-0430724, OCE-0911031, and OCE-1314642) and National Institutes of Health (NIEHS-1P50-ES021923-01) through the Woods Hole Center for Oceans and Human Health. The authors gratefully acknowledge these funding sources. Many thanks are extended to Satoshi Nagai for generously providing the M. rubrum and T. amphioxeia cultures used in this study. The authors gratefully thank two anonymous reviewers for providing helpful and constructive comments that improved the manuscript.[CG]	ANDERSON DM, 1994, MAR BIOL, V120, P467, DOI 10.1007/BF00680222; BUSKEY EJ, 1988, B MAR SCI, V43, P783; CRAWFORD DW, 1989, MAR ECOL PROG SER, V58, P161, DOI 10.3354/meps058161; Dahl E., 1996, HARMFUL TOXIC ALGAL, P265; Fenchel T, 2006, MAR BIOL RES, V2, P33, DOI 10.1080/17451000600571044; Fenchel T, 2001, PROTIST, V152, P329, DOI 10.1078/1434-4610-00071; Fux E, 2011, TOXICON, V57, P275, DOI 10.1016/j.toxicon.2010.12.002; GAINES G, 1985, J PROTOZOOL, V32, P290; GERRITSEN J, 1977, J FISH RES BOARD CAN, V34, P73, DOI 10.1139/f77-008; Papiol GG, 2016, HARMFUL ALGAE, V58, P1, DOI 10.1016/j.hal.2016.07.001; González-Gil S, 2010, AQUAT MICROB ECOL, V58, P273, DOI 10.3354/ame01372; HALLEGRAEFF GM, 1988, PHYCOLOGIA, V27, P25, DOI 10.2216/i0031-8884-27-1-25.1; HALLEGRAEFF GM, 1993, PHYCOLOGIA, V32, P79, DOI 10.2216/i0031-8884-32-2-79.1; Hansen PJ, 2013, HARMFUL ALGAE, V28, P126, DOI 10.1016/j.hal.2013.06.004; Hansen PJ, 1999, J EUKARYOT MICROBIOL, V46, P382, DOI 10.1111/j.1550-7408.1999.tb04617.x; Jiang HS, 2017, LIMNOL OCEANOGR, V62, P421, DOI 10.1002/lno.10432; Jiang HS, 2011, J PLANKTON RES, V33, P998, DOI 10.1093/plankt/fbr007; JONSSON PR, 1990, MAR ECOL PROG SER, V60, P35, DOI 10.3354/meps060035; Kiorboe T, 2014, P NATL ACAD SCI USA, V111, P11738, DOI 10.1073/pnas.1405260111; Lee JS, 1989, J APPL PHYCOL, V1, P147, DOI 10.1007/BF00003877; Lindholm T., 1985, Advances in Aquatic Microbiology, V3, P1; Maestrini Serge Y., 1998, NATO ASI Series Series G Ecological Sciences, V41, P243; Mafra LL, 2016, HARMFUL ALGAE, V59, P82, DOI 10.1016/j.hal.2016.09.009; Marcaillou C, 2005, J APPL PHYCOL, V17, P155, DOI 10.1007/s10811-005-7907-z; Nishitani Goh, 2008, Plankton & Benthos Research, V3, P78, DOI 10.3800/pbr.3.78; Ojamäe K, 2016, HARMFUL ALGAE, V55, P77, DOI 10.1016/j.hal.2016.02.001; Park MG, 2006, AQUAT MICROB ECOL, V45, P101, DOI 10.3354/ame045101; RAO DVS, 1993, MAR ECOL PROG SER, V97, P117; Reguera B, 2014, MAR DRUGS, V12, P394, DOI 10.3390/md12010394; Reguera B, 2012, HARMFUL ALGAE, V14, P87, DOI 10.1016/j.hal.2011.10.016; Reguera Beatriz, 2008, P257; Sjöqvist CO, 2011, J EUKARYOT MICROBIOL, V58, P365, DOI 10.1111/j.1550-7408.2011.00559.x; Taylor F.J.R., 1987, Botanical Monographs (Oxford), V21, P24; TAYLOR FJR, 1971, J FISH RES BOARD CAN, V28, P391, DOI 10.1139/f71-052; Tong MM, 2015, AQUAT MICROB ECOL, V75, P169, DOI 10.3354/ame01757; Tong MM, 2015, J PHYCOL, V51, P66, DOI 10.1111/jpy.12251; Tong MM, 2011, HARMFUL ALGAE, V10, P254, DOI 10.1016/j.hal.2010.10.005; Velo-Suárez L, 2008, LIMNOL OCEANOGR, V53, P1816; YASUMOTO T, 1980, B JPN SOC SCI FISH, V46, P1405	39	18	21	2	30	ELSEVIER SCIENCE BV	AMSTERDAM	PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS	1568-9883	1878-1470		HARMFUL ALGAE	Harmful Algae	JUL	2018	77						43	54		10.1016/j.hal.2018.06.007	http://dx.doi.org/10.1016/j.hal.2018.06.007			12	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	GO0YH	30005801	Bronze, Green Accepted			2025-03-11	WOS:000439672100005
J	Qiu, JB; Meng, FP; Ding, L; Che, YJ; McCarron, P; Beach, DG; Li, AF				Qiu, Jiangbing; Meng, Fanping; Ding, Ling; Che, Yijia; McCarron, Pearse; Beach, Daniel G.; Li, Aifeng			Dynamics of paralytic shellfish toxins and their metabolites during timecourse exposure of scallops <i>Chlamys farreri</i> and mussels <i>Mytilus galloprovincialis</i> to <i>Alexandrium pacificum</i>	AQUATIC TOXICOLOGY			English	Article						Paralytic shellfish toxins; Metabolites; Chlamys farreri; Mytilus galloprovincialis; Alexandrium pacificum; Alexandrium tamarense	ACID ESTER METABOLITES; POISONING TOXINS; GYMNODINIUM-CATENATUM; DETOXIFICATION KINETICS; PATINOPECTEN-YESSOENSIS; SAXITOXIN ANALOGS; MASS-SPECTROMETRY; TRANSFORMATION; DEPURATION; ACCUMULATION	New C-11 hydroxyl metabolites of paralytic shellfish toxins (PSTs) have been reported in shellfish. To gain further information on these metabolites, as well as the potential for formation of phase-II metabolites and acyl esters of PSTs, bivalves were fed with the PSTs-producing dinoflagellate Alexandrium pacificum (strain ATHK). Through independent experiments, scallops (Chlamys farreri) were fed for 9 days and mussels (Mytilus galloprovincialis) for 5 days plus an additional 5 days of depuration, with representative samples taken throughout. Several common PSTs (C1-4, GTX1-6 and NEO) and metabolites including Ml, M3, M5, M7, M9, M2 and M8 were detected in the hepatopancreas of scallops during toxin accumulation and in the hepatopancreas of mussels during both toxin accumulation and elimination periods. The relative molar ratio of metabolites to precursor molecules was used to estimate relative metabolic conversion rates. Conversion rates of C1/2 and GTX2/3 were higher than those of C3/4 and GTX1/4, in scallops and mussels. The first metabolites observed in both bivalve species investigated were M1/3, which are formed from C1/2. However, the conversion of GTX2/3 to M2 was more complete than other biotransformation reactions in both mussels and scallops. In general, metabolic conversion of PSTs was observed after a shorter time and to a greater extent in mussels than in scallops in the exposure period. No acyl esters or conjugation products of PSTs with glucuronic acid, glutathione, cysteine and taurine were detected by liquid chromatography with high resolution tandem mass spectrometry in the samples investigated. Additionally, only GTX1/4 and GTX2/3 were detected in the kidney of scallops, which demonstrates that PSTs are mainly metabolized through the hepatic metabolism pathway in bivalves. This work improves the understanding of PST metabolism during toxin accumulation and depuration in commercially harvested shellfish.	[Qiu, Jiangbing; Meng, Fanping; Ding, Ling; Che, Yijia; Li, Aifeng] Ocean Univ China, Coll Environm Sci & Engn, Qingdao 266100, Peoples R China; [Meng, Fanping; Li, Aifeng] Ocean Univ China, Key Lab Marine Environm & Ecol, Minist Educ, Qingdao 266100, Peoples R China; [McCarron, Pearse; Beach, Daniel G.] Natl Res Council Canada, Measurement Sci & Stand, 1411 Oxford St, Halifax, NS B3H 3Z1, Canada	Ocean University of China; Ocean University of China; National Research Council Canada; International Business Machines (IBM); IBM Canada	Li, AF (通讯作者)，Ocean Univ China, Coll Environm Sci & Engn, Qingdao 266100, Peoples R China.	lafouc@ouc.edu.cn	Li, Aifeng/AFZ-2242-2022; Qiu, Jiangbing/M-4390-2019; Beach, Daniel/A-8286-2013; Qiu, Jiangbing/J-4852-2018	Beach, Daniel/0000-0002-5680-2112; Qiu, Jiangbing/0000-0002-0973-1809	National Natural Science Foundation of China [41376122]; State Scholarship Fund by the China Scholarship Council [201606330051]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); State Scholarship Fund by the China Scholarship Council	This work was funded by the National Natural Science Foundation of China (41376122) and supported by the State Scholarship Fund by the China Scholarship Council (201606330051). 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Toxicol.	JUL	2018	200						233	240		10.1016/j.aquatox.2018.05.003	http://dx.doi.org/10.1016/j.aquatox.2018.05.003			8	Marine & Freshwater Biology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Toxicology	GM5ME	29778932				2025-03-11	WOS:000438180700024
J	Price, AM; Baustian, MM; Turner, RE; Rabalais, NN; Chmura, GL				Price, Andrea M.; Baustian, Melissa M.; Turner, R. Eugene; Rabalais, Nancy N.; Chmura, Gail L.			Dinoflagellate Cysts Track Eutrophication in the Northern Gulf of Mexico	ESTUARIES AND COASTS			English	Article						Sediments; Nutrients; Mississippi River; Atchafalaya River; Plankton; Hypoxia; Dead zone	LOUISIANA CONTINENTAL-SHELF; MISSISSIPPI RIVER; COASTAL WATERS; SEDIMENTARY RECORD; ECOLOGICAL ROLES; TOKYO-BAY; HYPOXIA; ASSEMBLAGES; INDICATORS; MICROPHYTOBENTHOS	We examined organic-walled dinoflagellate cysts from one Pb-210-dated sediment core and 39 surface sediment samples from the northern Gulf of Mexico to determine the relationship between nutrient enrichment and cyst assemblages in this region characterized by oxygen deficiency. The core spans from 1962 to 1997 and its sampling location is directly influenced by the Mississippi River plume. Surface sediments were collected in 2006, 2007, 2008, and 2014 and represent approximately 1 to 4 years of accumulation. A total of 57 cyst taxa were recorded, and four heterotrophic taxa in particular were found to increase in the top section (1986-1997) of the core-Brigantedinium spp., cysts of Archaeperidinium minutum, cysts of Polykrikos kofoidii, and Quinquecuspis concreta. These taxa show a similar increasing trend with variations in US fertilizer consumption and Mississippi River nitrate concentrations, both of which increased substantially in the 1970s and 1980s. The same four heterotrophic taxa dominated dinoflagellate cyst assemblages collected near the Mississippi River Bird's Foot Delta where nutrient concentrations were higher, especially in 2014. We propose that these cyst taxa can be used as indicators of eutrophication in the Gulf of Mexico. A canonical correspondence analysis (CCA) supports this proposition. The CCA identified sea-surface nutrient concentrations, sea-surface temperature, and sea-surface salinity as the most important factors influencing the cyst assemblages. In addition, cysts produced by the potentially toxic dinoflagellates Pyrodinium bahamense and Lingulodinium polyedrum were documented, but did not appear to have increased over the past 50 years.	[Price, Andrea M.; Chmura, Gail L.] McGill Univ, Dept Geog, Burnside Hall Bldg,805 Sherbrooke St West, Montreal, PQ H3A 0B9, Canada; [Price, Andrea M.; Turner, R. Eugene; Rabalais, Nancy N.] Louisiana State Univ, Dept Oceanog & Coastal Sci, 1002 Q Energy,Coast & Environm Bldg, Baton Rouge, LA 70803 USA; [Baustian, Melissa M.] Water Inst Gulf, One Amer Pl,301 N Main St,Suite 2000, Baton Rouge, LA 70825 USA; [Rabalais, Nancy N.] Louisiana Univ Marine Consortium, 8124 Highway 56, Chauvin, LA 70344 USA	Louisiana State University System; Louisiana State University	Price, AM (通讯作者)，McGill Univ, Dept Geog, Burnside Hall Bldg,805 Sherbrooke St West, Montreal, PQ H3A 0B9, Canada.; Price, AM (通讯作者)，Louisiana State Univ, Dept Oceanog & Coastal Sci, 1002 Q Energy,Coast & Environm Bldg, Baton Rouge, LA 70803 USA.	andrea.price@mail.mcgill.ca	Baustian, Melissa/ITT-2982-2023; Chmura, Gail/LNI-4648-2024; Rabalais, Nancy/GQA-6087-2022	Rabalais, Nancy N./0000-0002-1514-837X; Chmura, Gail/0000-0001-7163-3903	Natural Science and Engineering Research Council of Canada (NSERC) [CGS-D3]; Geological Society of America research; McGill's work study program; National Oceanic and Atmospheric Administration, Center for Sponsored Coastal Ocean Research [NA06OP0528, NA09NOS4780204, NA06OP0529, NA09NOS4780230, NGOMEX06]	Natural Science and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)); Geological Society of America research; McGill's work study program; National Oceanic and Atmospheric Administration, Center for Sponsored Coastal Ocean Research(National Oceanic Atmospheric Admin (NOAA) - USA)	The Natural Science and Engineering Research Council of Canada (NSERC) is acknowledged for providing partial funding via a graduate scholarship (CGS- D3) to AMP and a Discovery Grant to GLC. This work was supported by a Geological Society of America research grant awarded to AMP. We thank Zingyi Zhang and Wonjun Cho for their lab assistance and McGill's work study program that funded them, Wendy Morrison (LUMCON) for her assistance at LUMCON, Charles Milan (Louisiana State University) for his role in dating the sediment core, and Vera Pospelova (University of Victoria), Raja Sengupta (McGill University), and Suzanne Leroy (Brunel University) for their comments on an earlier draft of this manuscript. Support for ship time was provided by the National Oceanic and Atmospheric Administration, Center for Sponsored Coastal Ocean Research, under awards NA06OP0528 and NA09NOS4780204 to Louisiana Universities Marine Consortium, awards NA06OP0529 and NA09NOS4780230 to Louisiana State University, and NGOMEX06 funding to NNR and RET. The crew of the R/V Pelican is thanked for assistance with sample collection. 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J	Jung, SW; Kang, D; Kim, HJ; Shin, HH; Park, JS; Park, SY; Lee, TK				Jung, Seung Won; Kang, Donhyug; Kim, Hyun-Jung; Shin, Hyeon Ho; Park, Joon Sang; Park, So Yun; Lee, Taek-Kyun			Mapping distribution of cysts of recent dinoflagellate and <i>Cochlodinium polykrikoides</i> using next-generation sequencing and morphological approaches in South Sea, Korea	SCIENTIFIC REPORTS			English	Article							ENVIRONMENTAL DNA; COASTAL WATERS; DINOPHYCEAE; SCRIPPSIELLA; PHYLOGENY; COMMUNITY; MARGALEF; REVEALS	The total dinoflagellate cyst community and the cysts of Cochlodinium polykrikoides in the surface sediments of South Sea (Tongyeong coast), South Korea, were analysed using next-generation sequencing (NGS) and morphological approaches. Dinoflagellate cysts can be highly abundant (1114,087 cysts g(-1) dry weight) and have diverse species composition. A total of 35 taxa of dinoflagellate cysts representing 16 genera, 21 species (including four unconfirmed species), and 14 complex species were identified by NGS analysis. Cysts of Scrippsiella spp (mostly Scrippsiella trochoidea) were the most dominant and Polykrikos schwartzii, Pentapharsodinium dalei, Ensiculifera carinata, and Alexandrium catenella/tamarense were common. Thus, a combination of NGS and morphological analysis is effective for studying the cyst communities present in a given environment. Although C. polykrikoides developed massive blooms during 2013-2014, microscopy revealed low density of their cysts, whereas no cysts were detected by NGS. However, the vegetative C. polykrikoides not appeared during 2015-2017 in spite of the observation of C. polykrikoides cysts. This suggests that the C. polykrikoides blooms were not due to development of their cysts but to other factors such as currents transporting them to a marine environment suitable for their growth.	[Jung, Seung Won; Kim, Hyun-Jung; Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Kang, Donhyug] Korea Inst Ocean Sci & Technol, Maritime Secur Res Ctr, Busan 49111, South Korea; [Park, Joon Sang] Korea Inst Ocean Sci & Technol, Marine Ecosyst & Biol Res Ctr, Busan 49111, South Korea; [Park, So Yun; Lee, Taek-Kyun] Korea Inst Ocean Sci & Technol, South Sea Environm Res Ctr, Geoje 53201, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST)	Lee, TK (通讯作者)，Korea Inst Ocean Sci & Technol, South Sea Environm Res Ctr, Geoje 53201, South Korea.	diatoms@kiost.ac.kr; tklee@kiost.ac.kr	Lee, Hak/Q-7386-2019	Shin, Hyeon Ho/0000-0002-9711-6717; Kim, Hyun-Jung/0000-0002-7961-9943; Lee, Taek-Kyun/0000-0001-6090-507X	Public Welfare & Safety Research Program through the National Research Foundation of Korea (NRF) - Ministry of Science and ICT of Republic of Korea [NRF-2013M3A2A1067529]; Research Program of Korea Institute of Marine Science & Technology (KIMST) - Ministry of Oceans and Fisheries of Republic of Korea [PM 60650]; Research Program of Korea Institute of Ocean Science and Technology [PE99628]	Public Welfare & Safety Research Program through the National Research Foundation of Korea (NRF) - Ministry of Science and ICT of Republic of Korea(National Research Foundation of Korea); Research Program of Korea Institute of Marine Science & Technology (KIMST) - Ministry of Oceans and Fisheries of Republic of Korea(Korea Institute of Marine Science & Technology Promotion (KIMST)); Research Program of Korea Institute of Ocean Science and Technology	The stored genomic DNA samples and fixed phytoplankton samples were obtained from the Library of Marine Samples, Korea Institute of Ocean Science & Technology, South Korea. This work was supported by the Public Welfare & Safety Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science and ICT of Republic of Korea (Development of autonomous microalgal identification system and feasibility analyses of developed HAB control technologies: NRF-2013M3A2A1067529), supported by the Research Program of Korea Institute of Marine Science & Technology (KIMST) funded by the Ministry of Oceans and Fisheries of Republic of Korea (Establishment and demonstration of red tide detection and prediction system for minimizing red tide damage: PM 60650), and supported by the Research Program of Korea Institute of Ocean Science and Technology (Development of marine cold water layer-based multi-culture technology for marine biological resources: PE99628).	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J	Abadie, E; Chiantella, C; Crottier, A; Rhodes, L; Masseret, E; Berteaux, T; Laabir, M				Abadie, Eric; Chiantella, Claude; Crottier, Anais; Rhodes, Lesley; Masseret, Estelle; Berteaux, Tom; Laabir, Mohamed			What are the main environmental factors driving the development of the neurotoxic dinoflagellate <i>Vulcanodinium rugosum </i>in a Mediterranean ecosystem (Ingril lagoon, France)?	HARMFUL ALGAE			English	Article						Vulcanodinium rugosum; Neurotoxins; Ingril lagoon; Environmental factors; Development dynamic	OSTREOPSIS CF. OVATA; BIVALVE PINNA-MURICATA; NORTHERN ADRIATIC SEA; HARMFUL ALGAL BLOOMS; ALEXANDRIUM-CATENELLA; THAU LAGOON; TEMPORARY CYSTS; SOUTHERN FRANCE; COASTAL WATERS; NEW-ZEALAND	Vulcanodinium rugosum, a dinofiagellate developing in Ingril Lagoon (Mediterranean, France) is responsible for shellfish intoxications due to the neurotoxin pinnatoxin G. A one year survey (March 2012-April 2013) was conducted in this oligotrophic shallow lagoon and key environmental parameters were recorded (temperature, salinity and nutrients). The spatio-temporal distribution of V. rugosum in water column and on macrophytes was also determined. Planktonic cells of V. rugosum were observed at all sampling stations, but in relatively low concentrations (maximum of 1000 cell/L). The highest abundances were observed from June to September 2012. There was a positive correlation between cell densities and both temperature and salinity. Non-motile cells were detected on macrophytes, with a maximum concentration of 6300 cells/g wet weight. Nitrite and ammonium were negatively related to V. rugosum abundance whereas total nitrogen, total phosphorus and phosphates showed a positive correlation. Altogether, in situ results suggest that V. rugosum is rather thermophilic and that organic nutrients should be considered when studying the nutrition requirements for this noxious expanding dinoflagellate. (C) 2018 Elsevier B.V. All rights reserved.	[Abadie, Eric; Chiantella, Claude; Crottier, Anais; Berteaux, Tom] Univ Montpellier, IFREMER, Lab Environm Ressources Languedoc Roussillon,IRD, Ctr Marine Biodivers Exploitat & Conservat MARBEC, CS30171, Sete 03, France; [Rhodes, Lesley] Cawthron Inst, 98 Halifax St East,Private Bag 2, Nelson 7042, New Zealand; [Masseret, Estelle; Laabir, Mohamed] Univ Montpellier, Ctr Marine Biodivers Exploitat & Conservat MARBEC, CNRS, IRD,Ifremer, Pl E Bataillon,CC93, F-34095 Montpellier 5, France	Universite de Montpellier; Ifremer; Institut de Recherche pour le Developpement (IRD); Cawthron Institute; Universite de Montpellier; Institut de Recherche pour le Developpement (IRD); Centre National de la Recherche Scientifique (CNRS); Ifremer	Abadie, E (通讯作者)，Univ Montpellier, IFREMER, Lab Environm Ressources Languedoc Roussillon,IRD, Ctr Marine Biodivers Exploitat & Conservat MARBEC, CS30171, Sete 03, France.	Eric.abadie@ifremen.fr		ABADIE, Eric/0000-0001-9431-2010	TOTAL Foundation; Agence de l'Eau Rhone Mediterranee Corse (AERMC the Rhone-Mediterranean); Agence de l'Eau Rhone Mediterranee Corse (Corsica Water Agency); IRD (Institut National pour la Recherche et le Developpement National Institute for Research and Development)	TOTAL Foundation(Total SA); Agence de l'Eau Rhone Mediterranee Corse (AERMC the Rhone-Mediterranean); Agence de l'Eau Rhone Mediterranee Corse (Corsica Water Agency); IRD (Institut National pour la Recherche et le Developpement National Institute for Research and Development)	This work was backed by the LAGUNOTOX project funded by TOTAL Foundation. We would also to thank the Agence de l'Eau Rhone Mediterranee Corse (AERMC the Rhone-Mediterranean and Corsica Water Agency) for their financial help. Thanks to the IRD (Institut National pour la Recherche et le Developpement National Institute for Research and Development) for funding Mr. Mohamed Laabir's stay in Marocco.[CG]	Abadie E., 2016, TOXINS, V136; ABADIE E, 1999, CONTAMINATION ETANG; Abadie E, 2015, MAR DRUGS, V13, P5642, DOI 10.3390/md13095642; Accoroni S, 2015, HARMFUL ALGAE, V49, P147, DOI 10.1016/j.hal.2015.08.007; Accoroni S, 2015, HARMFUL ALGAE, V45, P14, DOI 10.1016/j.hal.2015.04.002; Accoroni S, 2012, CRYPTOGAMIE ALGOL, V33, P191, DOI 10.7872/crya.v33.iss2.2011.191; Accoroni S, 2011, MAR POLLUT BULL, V62, P2512, DOI 10.1016/j.marpolbul.2011.08.003; Aissaoui A, 2014, WATER ENVIRON RES, V86, P2256, DOI 10.2175/106143014X13975035526266; Aligizaki K, 2006, HARMFUL ALGAE, V5, P717, DOI 10.1016/j.hal.2006.02.005; Almazán-Becerril A, 2015, BOT MAR, V58, P115, DOI 10.1515/bot-2014-0093; Aminot A., 2007, Dosage Automatique Des Nutriments Dans Les Eaux Marines; Anderson DM, 2002, ESTUARIES, V25, P704, DOI 10.1007/BF02804901; 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J	Wang, H; Park, BS; Lim, WA; Ki, JS				Wang, Hui; Park, Bum Soo; Lim, Weol-Ae; Ki, Jang-Seu			<i>CpMCA</i>, a novel metacaspase gene from the harmful dinoflagellate <i>Cochlodinium polykrikoides</i> and its expression during cell death	GENE			English	Article						Cochlodinium polykrikoides; CpMCA; Algicide; HGT; Transcriptional response; PCD	GENOME-WIDE ANALYSIS; PROROCENTRUM-DONGHAIENSE; REVEALS; FAMILY	Metacaspases (MCAs) are cysteine proteases that share sequence homology with caspases, and may play roles in programmed cell death (PCD). In the present study, we identified a novel MCA gene (CpMCA) from the red tide dinoflagellate Cochlodinium polykrikoides, and examined its molecular characteristics and gene expression in response to algicide-induced cell death. CpMCA cDNA is 1164 bp in length, containing a dinoflagellate spliced leader sequence (dinoSL), an 879-bp open reading frame (ORF), which codes for a 293-aa protein, and a poly (A) tail. Multi-sequence comparison indicated that CpMCA belongs to type I MCA, but it has a different structure at the N-terminal. Phylogenetic analysis showed that C. poly. krikoides may have acquired the MCA gene from bacteria by means of horizontal gene transfer (HGT). In addition, expressions of CpMCA significantly increased following exposure to the common algicides copper sulfate and oxidizing chlorine, which trigger cell death in dinoflagellates, suggesting that CpMCA may be involved in cell death.	[Wang, Hui; Ki, Jang-Seu] Sangmyung Univ, Dept Biotechnol, Seoul 03016, South Korea; [Park, Bum Soo] Sangmyung Univ, Inst Nat Sci, Seoul 03016, South Korea; [Lim, Weol-Ae] Natl Inst Fisheries Sci, Ocean Climate & Ecol Res Div, Busan 46083, South Korea	Sangmyung University; Sangmyung University; National Institute of Fisheries Science	Ki, JS (通讯作者)，Sangmyung Univ, Dept Biotechnol, Seoul 03016, South Korea.	kijs@smu.ac.kr	Wang, Hui/AFD-3905-2022; PARK, Bum Soo/W-3178-2017	PARK, Bum Soo/0000-0002-5441-6779; Wang, Hui/0000-0002-4121-1838	National Research Foundation of Korea Grant - Korean Government [2015M1A5A1041805, 2016R1D1A1A09920198]; National Fisheries Research and Development [R2018043]	National Research Foundation of Korea Grant - Korean Government(National Research Foundation of Korea); National Fisheries Research and Development	This work was supported by the National Research Foundation of Korea Grant funded by the Korean Government (2015M1A5A1041805 and 2016R1D1A1A09920198), and by a grant from the National Fisheries Research and Development (R2018043) funded to J.-S. Ki.	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J	Cuellar-Martinez, T; Alonso-Rodríguez, R; Ruiz-Fernández, AC; de Vernal, A; Morquecho, L; Limoges, A; Henry, M; Sanchez-Cabeza, JA				Cuellar-Martinez, Tomasa; Alonso-Rodriguez, Rosalba; Carolina Ruiz-Fernandez, Ana; de Vernal, Anne; Morquecho, Lourdes; Limoges, Audrey; Henry, Maryse; Sanchez-Cabeza, Joan-Albert			Environmental forcing on the flux of organic-walled dinoflagellate cysts in recent sediments from a subtropical lagoon in the Gulf of California	SCIENCE OF THE TOTAL ENVIRONMENT			English	Article						Sediment; Dinocyst; San Jose Island; Polysphaeridium zoharyi; Lingulodinium machaerophorum; Climatic variability	HARMFUL ALGAL BLOOMS; SEA-SURFACE CONDITIONS; TODOS-SANTOS BAY; LINGULODINIUM-POLYEDRUM; PYRODINIUM-BAHAMENSE; BAJA-CALIFORNIA; SPATIAL-DISTRIBUTION; ACCUMULATION RATES; CLIMATE-CHANGE; MARINE	To evaluate the relationship of changes in organic-walled dinoflagellate cyst (dinocyst) fluxes to sediments with environmental variables (air and sea surface temperatures, El Nino conditions, rainfall, and terrigenous index), cyst assemblages were analyzed in a Pb-210-dated sediment core (similar to 100 years) from the pristine San Jose Lagoon (San Jose Island, SWGulf of California). The dinocyst abundance ranged from3784 to 25,108 cysts g(-1) and fluxes were of the order of 103-104 cysts cm(-2) yr(-1). Lingulodinium machaerophorum, Polysphaeridium zoharyi and Spiniferites taxa accounted for 96% of the total dinocyst assemblages, and the abundances of these species increased towards the core surface. P. zoharyi fluxes increased from about 1965 onwards. Redundancy analyses, showed that mean minimum air temperature and terrigenous index were the key factors governing dinocyst fluxes. In this study, dinocyst fluxes of dominant taxa had responded to changes in climate-dependent environmental variables during the past similar to 20 years; this may also be the case in other subtropical coastal lagoons. (C) 2017 Elsevier B. V. All rights reserved.	[Cuellar-Martinez, Tomasa] Univ Nacl Autonoma Mexico, Posgrad Ciencias Mar & Limnol, Av Ciudad Univ 3000, Mexico City 04510, DF, Mexico; [Alonso-Rodriguez, Rosalba; Carolina Ruiz-Fernandez, Ana] Univ Nacl Autonoma Mexico, Inst Ciencias Mar & Limnol, Unidad Acad Mazatlan, Mazatlan 82040, Sinaloa, Mexico; [de Vernal, Anne; Henry, Maryse] Univ Quebec Montreal, Geotop, CP 8888,Succ Ctr Ville, Montreal, PQ H3C 3P8, Canada; [Morquecho, Lourdes] Ctr Invest Biol Noroeste CIBNOR, Av IPN 195, La Paz 23096, Baja California, Mexico; [Limoges, Audrey] Univ New Brunswick, Dept Earth Sci, 2 Bailey Dr, Fredericton, NB E3B 5A3, Canada; [Sanchez-Cabeza, Joan-Albert] Univ Nacl Autonoma Mexico, Inst Ciencias Mar & Limnol, Unidad Acad Proc Ocean & Costeros, Ciudad Univ, Mexico City 04510, DF, Mexico	Universidad Nacional Autonoma de Mexico; Universidad Nacional Autonoma de Mexico; University of Quebec; University of Quebec Montreal; CIBNOR - Centro de Investigaciones Biologicas del Noroeste; University of New Brunswick; Universidad Nacional Autonoma de Mexico	Alonso-Rodríguez, R (通讯作者)，Univ Nacl Autonoma Mexico, Inst Ciencias Mar & Limnol, Unidad Acad Mazatlan, Mazatlan 82040, Sinaloa, Mexico.	rosalba@ola.icmyl.unam.mx	Morquecho, Lourdes/JPY-0626-2023; de Vernal, Anne/D-5602-2013; Ruiz-Fernández, Ana Carolina/ABG-6985-2020; Sanchez-Cabeza, Joan-Albert/Q-2394-2016; Alonso-Rodriguez, Rosalba/U-9896-2017	Sanchez-Cabeza, Joan-Albert/0000-0002-3540-1168; Alonso-Rodriguez, Rosalba/0000-0001-7716-3869; Cuellar Martinez, Tomasa/0000-0002-0460-6275; Limoges, Audrey/0000-0002-4587-3417; Morquecho, Lourdes/0000-0003-2963-8836; RUIZ-FERNANDEZ, ANA CAROLINA/0000-0002-2515-1249	Posgrado en Ciencias del Mar y Limnologia, UNAM; CONACYT [307783];  [CONACYT 196813];  [PAPIIT-UNAM IN112914];  [PROMEP/103.5/13/9335];  [IAEA-ARCAL RLA 7014]	Posgrado en Ciencias del Mar y Limnologia, UNAM(Universidad Nacional Autonoma de Mexico); CONACYT(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); ; ; ; 	This work was supported by the grants CONACYT 196813, PAPIIT-UNAM IN112914 and PROMEP/103.5/13/9335, IAEA-ARCAL RLA 7014. TCM thanks to Posgrado en Ciencias del Mar y Limnologia, UNAM and CONACYT which provided the Ph.D. fellowship (307783). The authors thank E. Calvillo-Espinoza, J. Angulo-Calvillo, A. Gonzalez-Peralta for their help provided in field work; M. Hernandez-Vazquez and L. H. Perez-Bernal for laboratory analysis; G. Ramirez-Resendiz, C. Suarez, E. Cruz-Acevedo for data management and artwork; and D. Oviedo and H. Rojas for bibliographic research assistance. M. E. Sanchez-Salazar and A. Grant contributed to the edition of the English manuscript. We also appreciate to anonymous reviewers for their thorough and constructive reviews.	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Total Environ.	APR 15	2018	621						548	557		10.1016/j.scitotenv.2017.11.269	http://dx.doi.org/10.1016/j.scitotenv.2017.11.269			10	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	FU9SJ	29195203				2025-03-11	WOS:000424196800057
J	Kitchen, SA; Bourdelais, AJ; Taylor, AR				Kitchen, Sheila A.; Bourdelais, Andrea J.; Taylor, Alison R.			Interaction of a dinoflagellate neurotoxin with voltage-activated ion channels in a marine diatom	PEERJ			English	Article						Brevetoxin; Karenia brevis; Action potential; Sodium channel; Dinoflagellate; Diatom	GATED SODIUM-CHANNELS; RED-TIDE DINOFLAGELLATE; HARMFUL ALGAL BLOOMS; BREVETOXIN-PRODUCING DINOFLAGELLATE; KARENIA-BREVIS BLOOMS; NA+-CHANNEL; POLYKETIDE SYNTHASES; MOLECULAR-MECHANISMS; SENSORY NEURONS; PHYTOPLANKTON	Background, The potent neurotoxins produced by the harmful algal bloom species Karenict brevis are activators of sodium voltage-gated channels (VGC) in animals, resulting in altered channel kinetics and membrane hyperexcitability. Recent biophysical and genomic evidence supports widespread presence of homologous sodium (Na+) and calcium (Ca2+) permeable VGCs in unicellular algae,including marine phytoplankton. We therefore hypothesized that VGCs of these phytoplankton may be an allelopathic target for waterborne neurotoxins produced by K. brevis blooms that could lead to ion channel dysfunction and disruption of signaling in a similar manner to animal Na+ VGCs. Methods. We examined the interaction of brevetoxin-3 (PbTx-3), a K. brevis neurotoxin with the Na+/Ca2+ VGC of the non-toxic diatom Odontella sinensis using electrophysiology, Single electrode current-and voltage-clamp recordings from O. sinensis in the presence of PbTx-3 were used to examine the toxin's effect on voltage gated Na+/Ca2+ currents. In silco analysis was used to identify the putative PbTx binding site in the diatoms. We identified Na+/Ca2+ ATCG homologs from the. transcriptomes and genomes of 12 diatoms, including three transcriptsfrom O. sinensts and aligned them with site-5 of Na+ VGCs, previously identified as the PbTx binding site in animals. Results. Up to 1 mu M PbTx had no effect on diatom resting membrane potential or membrane excitability. The kinetics of fast inward Na+/Ca2+ currents that underlie diatom action potentials were also unaffected. However, the peak inward current was inhibited by 33%, delayed outward current was inhibited by 25%, and reversal potential of the currents shifted positive, indicating a change in permeability of the underlying channels. Sequence analysis showed a lack of conservation of the PbTx binding site in diatom VGC homologs, many of which share molecular features more similar to single-domain bacterial Na+/Ca2+ VGCs than the 4-domain eukaryote channels. Discussion. Although membrane excitability and the kinetics of action potential currents were unaffected, the permeation of the channels underlying the diatom action potential was significantly altered in the presence of PbTx-3. However, at environmentally relevant concentrations the effects of PbTx-on diatom voltage activated currents and interference of cell signaling through this pathway may be limited. The relative insensitivity of phytoplankton VGCs may be due to divergence of site-5 (the putative PbTx binding site), and in some cases, such as a sinensis, resistance	[Kitchen, Sheila A.; Taylor, Alison R.] Univ North Carolina Wilmington, Dept Biol & Marine Biol, Wilmington, NC 28403 USA; [Bourdelais, Andrea J.] Univ North Carolina Wilmington, Ctr Marine Sci, Wilmington, NC USA	University of North Carolina; University of North Carolina Wilmington; University of North Carolina; University of North Carolina Wilmington	Taylor, AR (通讯作者)，Univ North Carolina Wilmington, Dept Biol & Marine Biol, Wilmington, NC 28403 USA.	taylora@uncw.edu		Kitchen, Sheila/0000-0003-4402-8139	University of North Carolina Wilmington Center for Marine Science Pilot Grant; National Science Foundation [IOS 0949744]	University of North Carolina Wilmington Center for Marine Science Pilot Grant; National Science Foundation(National Science Foundation (NSF))	This work was supported by a University of North Carolina Wilmington Center for Marine Science Pilot Grant and by the National Science Foundation (IOS 0949744). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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J	Kang, W; Wang, ZH				Kang, Wei; Wang, Zhao-Hui			Identification of a marine woloszynskioid dinoflagellate <i>Biecheleriopsis adriatica</i> and germination of its cysts from southern Chinese coasts	JOURNAL OF ENVIRONMENTAL SCIENCES			English	Article						Biecheleriopsis adriatica; Cyst; Germination; Phylogeny; Southern China	SP-NOV; LAKE TOVEL; COMB. NOV; GEN. NOV.; DINOPHYCEAE; ULTRASTRUCTURE; SUESSIACEAE; AREAS	A strain of small-sized dinoflagellates, isolated from the culture of sediment incubation collected from the coastal areas in southern China, has been identified under microscopical observation and rDNA sequence. Surface sediments from two sea areas in the southern Chinese coastal waters were incubated for 20 and 40 days, and germinated vegetative cells were observed. The cells were identified as species in the Suessiaceae based on the morphological characteristics, ultrastructural features of the cell, as well as its swimming behavior. The studied strain clusters into a well-supported Glade together with six sequences of Biecheleriopsis adriatica in the phylogenetic tree based on the large subunit (LSU) rDNA sequence. Therefore, the strain has been identified as B. adriatica based on morphological observation and phylogenetic analysis. B. adriatica was the dominant dinoflagellate species in the germinated phytoplankton community from both sea areas, which contributed 50%-83% to the total germinated dinoflagellates averagely. However, B. adriatica has not been reported in previous phytoplankton surveys, and was probably ignored or misidentified due to its small size and thin wall. The frequent and abundant occurrence of B. adriatica in the germinated phytoplankton community of many sea areas of the southern Chinese coastal waters suggests its wide and abundant distribution in these sea areas. (C) 2017 The Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences. Published by Elsevier B.V.	[Kang, Wei] Chinese Acad Fishery Sci, East China Sea Fisheries Res Inst, Minist Agr China, Key & Open Lab Marina & Estuary Fisheries, Shanghai 200090, Peoples R China; [Wang, Zhao-Hui] Jinan Univ, Coll Life Sci & Technol, Key Lab Eutrophicat & Red Tide Prevent Guangdong, Guangzhou 510632, Guangdong, Peoples R China; [Wang, Zhao-Hui] Minist Educ, Engn Res Ctr Trop & Subtrop Aquat Ecol Engn, Guangzhou 510632, Guangdong, Peoples R China	Ministry of Agriculture & Rural Affairs; Chinese Academy of Fishery Sciences; East China Sea Fisheries Research Institute, CAFS; Jinan University	Wang, ZH (通讯作者)，Jinan Univ, Coll Life Sci & Technol, Key Lab Eutrophicat & Red Tide Prevent Guangdong, Guangzhou 510632, Guangdong, Peoples R China.; Wang, ZH (通讯作者)，Minist Educ, Engn Res Ctr Trop & Subtrop Aquat Ecol Engn, Guangzhou 510632, Guangdong, Peoples R China.	twzh@jnu.edu.cn	Kang, Wei/JUV-4778-2023	Chi, Hai/0000-0003-3072-511X	National Natural Foundation of China [41276154, 41476132]	National Natural Foundation of China(National Natural Science Foundation of China (NSFC))	The authors gratefully acknowledge Dr. Larry B. Liddle of Long Island University USA for reviewing the manuscript. This work was supported by the National Natural Foundation of China (Nos. 41276154, 41476132).	Anderson D. M., 2003, MANUAL HARMFUL MARIN, P99; Fensome R. A., 1993, MICROPALEONTOLOGY, V351; Guillard R. R. L., 1975, CULTURE MARINE INVER, P29, DOI DOI 10.1007/978-1-4615-8714-9_3; Guiry M.D., 2014, AlgaeBase. 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J	Matsuoka, K; Ikeda, Y; Kaga, S; Kaga, Y; Ogata, T				Matsuoka, Kazumi; Ikeda, Yuri; Kaga, Shinnosuke; Kaga, Yoshimasa; Ogata, Takehiko			Repercussions of the Great East Japan Earthquake tsunami on ellipsoidal <i>Alexandrium cysts</i> (Dinophyceae) in Ofunato Bay, Japan	MARINE ENVIRONMENTAL RESEARCH			English	Article						Alexandrium cyst; Great East Japan Earthquake; Ofunato Bay; Sediment; Paralytic shellfish poisoning; Chilean tsunami	SETO-INLAND SEA; TAMARENSE RESTING CYSTS; DINOFLAGELLATE CYSTS; SURFACE SEDIMENTS; KESENNUMA BAY; TOXIC DINOFLAGELLATE; IWATE PREFECTURE; SPP. DINOPHYCEAE; DISASTER 3.11; MOUNE BAY	Shellfish aquaculture in Ofunato Bay, Northeast Japan, was seriously damaged by a tsunami generated by the Great East Japan Earthquake, March 11th, 2011, accompanied by paralytic shellfish poisoning (PSP) outbreaks caused by Alexandrium tamarense (Dinophyceae). To understand longer future trends of PSP, an investigation was made of the historical occurrence and causes of Alexandrium outbreaks after the tsunami. Vertical distributions of Alexandrium cysts in two sediment-cores from Ofunato Bay revealed that the sediments above ca. 25 cm were eroded, re-suspended and re-deposited, and they included unusually abundant Alexandrium cysts. This abundance of cysts was due to re-deposition of older sediments by the tsunami. The first Ofunato Bay PSP incident was in 1961 after the Chilean Earthquake tsunami and was probably caused by similar unusual blooms of Alexandrium germinated from older sediments as the Great East Japan tsunami, together with nutrient enrichment because of population increase at the start of shellfish aquaculture.	[Matsuoka, Kazumi] Nagasaki Univ, Inst East China Sea Res, 1551-7 Taira Machi, Nagasaki 8512213, Japan; [Ikeda, Yuri; Ogata, Takehiko] Kitasato Univ, Sch Marine Biosci, Minami Ku, 1-15-1 Kitasato, Sagamihara, Kanagawa 2520373, Japan; [Kaga, Shinnosuke] Iwate Prefectural Govt, 10-1 Uchimaru, Morioka, Iwate 0208570, Japan; [Kaga, Yoshimasa] Iwate Fisheries Technol Ctr, 3-75-3 Hirata, Kamaishi, Iwate 0260001, Japan; [Matsuoka, Kazumi] 1403,370-2 Kuzetakada Cho,Minami Ku, Kyoto 6018211, Japan	Nagasaki University; Kitasato University	Matsuoka, K (通讯作者)，Nagasaki Univ, Inst East China Sea Res, 1551-7 Taira Machi, Nagasaki 8512213, Japan.; Matsuoka, K (通讯作者)，1403,370-2 Kuzetakada Cho,Minami Ku, Kyoto 6018211, Japan.	kazu-mtk@nagasaki-u.ac.jp; yikeda@kitasato-u.ac.jp; s-kaga@pref.iwate.jp; y-kaga@pref.iwate.jp; t.ogata@kitasato-u.ac.jp		Kaga, Shinnosuke/0000-0001-7066-4142	Sustainable Aquatic Food and Environment Project in the East China Sea (SAFE) Project in Nagasaki University; research project funds, Tohoku Ecosystem-Associated Marine Science Project (Ministry of Education, Culture, Sports, Science, and Technology)	Sustainable Aquatic Food and Environment Project in the East China Sea (SAFE) Project in Nagasaki University; research project funds, Tohoku Ecosystem-Associated Marine Science Project (Ministry of Education, Culture, Sports, Science, and Technology)	We sincerely express our acknowledgements to Dr. Petra Mudie, Geological Survey, Canada for her constructive suggestion and comments to the earlier manuscript. This research was partly supported by the Sustainable Aquatic Food and Environment Project in the East China Sea (SAFE) Project in Nagasaki University and the research project funds, Tohoku Ecosystem-Associated Marine Science Project (Ministry of Education, Culture, Sports, Science, and Technology).	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Environ. Res.	APR	2018	135						123	135		10.1016/j.marenvres.2018.01.001	http://dx.doi.org/10.1016/j.marenvres.2018.01.001			13	Environmental Sciences; Marine & Freshwater Biology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Toxicology	GA6YX	29449069	Green Submitted			2025-03-11	WOS:000428482300013
J	Huang, XG; Li, SX; Liu, FJ; Lan, WR				Huang, Xu-Guang; Li, Shun-xing; Liu, Feng-Jiao; Lan, Wang-Rong			Regulated effects of <i>Prorocentrum donghaiense</i> Lu exudate on nickel bioavailability when cultured with different nitrogen sources	CHEMOSPHERE			English	Article						Nickel; Bioavailability; Toxicity; Exudation; Metal speciation	TOXIC DINOFLAGELLATE ALEXANDRIUM; DIFFERENT MARINE-ALGAE; EMILIANIA-HUXLEYI; GREEN-ALGA; SKELETONEMA-COSTATUM; ORGANIC-CARBON; ZINC UPTAKE; NI UPTAKE; PHYTOPLANKTON; COPPER	Exudates by marine phytoplankton and metals coexist in the seawater, but little is known about their interaction. In this study, cultures of Prorocentrum donghaiense Lu were grown in urea and ammonium, and then exposed to different Ni ion levels in order to study the effects of Ni ions on algal growth. The regulatory mechanisms of P. donghaiense Lu for coping with different Ni ion levels was investigating by characterizing dissolved organic carbon (DOC), carbohydrate and protein content released per cell, hydropathy properties (hydrophilic and hydrophobic fractions) and thiol compounds (cysteine-like or glutathione-like). Lower levels of Ni ions (pNi>10.0) significantly promoted the growth of P. donghaiense Lu when incubated in urea; however, the same was not true for P. donghaiense Lu cultivated in ammonium. An increased presence of hydrophobic fractions and thiol compounds (cysteine-like or glutathione-like compounds) induced by low Ni ions (pNi>10.0) in urea cultures suggest that the activation of cellular mechanisms in response to insufficient Ni ion stress enhances Ni bioavailability. Furthermore, the abundance of carbohydrates and proteins released by cells when exposed to higher Ni ions levels (from pNi = 10.0 to pNi = 8.0) both in urea and ammonium cultures suggests that algal cells may utilize exudate to complex Ni cations and reduce their toxicity. Therefore, it can be speculated that phytoplankton can produce large amounts of specific exudate, which may accelerate the metal bioavailability (insufficient levels) and reduce metal toxicity (excess levels) to maintain an equilibrium with metals in the environment. (C) 2018 Elsevier Ltd. All rights reserved.	[Huang, Xu-Guang; Li, Shun-xing; Lan, Wang-Rong] Minnan Normal Univ, Coll Chem & Environm Sci, Zhangzhou 363000, Peoples R China; [Huang, Xu-Guang; Li, Shun-xing] Minnan Normal Univ, Fujian Prov Key Lab Modern Analyt Sci & Separat T, Zhangzhou 363000, Peoples R China; [Li, Shun-xing; Liu, Feng-Jiao] Xiamen Univ, Minist Educ, Key Lab Coastal & Wetland Ecosyst, Xiamen 361005, Peoples R China	MinNan Normal University; MinNan Normal University; Xiamen University	Huang, XG (通讯作者)，Minnan Normal Univ, Coll Chem & Environm Sci, Zhangzhou 363000, Peoples R China.	huangxuguang@munu.edu.cn	Liu, Fengjiao/AAO-7998-2020		National Natural Science Foundation of China [41206096, 40506020]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was supported by the National Natural Science Foundation of China (41206096 and 40506020).	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J	Figueroa, RI; Estrada, M; Garcés, E				Isabel Figueroa, Rosa; Estrada, Marta; Garces, Esther			Life histories of microalgal species causing harmful blooms: Haploids, diploids and the relevance of benthic stages	HARMFUL ALGAE			English	Article						Harmful algal species; Life history; Harmful algal blooms; Environmental and physiological factors; Resting stages; Management; Models	DINOFLAGELLATE GYMNODINIUM-CATENATUM; HETEROSIGMA-AKASHIWO RAPHIDOPHYCEAE; FIBROCAPSA-JAPONICA RAPHIDOPHYCEAE; RESTING CYSTS; ALEXANDRIUM-TAMARENSE; ALGAL BLOOMS; COCHLODINIUM-POLYKRIKOIDES; AKINETE DIFFERENTIATION; POPULATION-DYNAMICS; SEXUAL REPRODUCTION	In coastal and offshore waters, Harmful Algal Blooms (HABs) currently threaten the well-being of coastal countries. These events, which can be localized or involve wide-ranging areas, pose risks to human health, marine ecosystems, and economic resources, such as tourism, fisheries, and aquaculture. Dynamics of HABs vary from one site to another, depending on the hydrographic and ecological conditions. The challenge in investigating HABs is that they are caused by organisms from multiple algal classes, each with its own unique features, including different life histories. The complete algal life cycle has been determined in <1% of the described species, although elucidation of the life cycles of bloom forming species is essential in developing preventative measures. The knowledge obtained thus far has confirmed the complexity of the algal life cycle, which is composed of discrete life stages whose morphology, ecological niche (plankton(benthos), function, and lifespan vary. The factors that trigger transitions between the different stages in nature are mostly unknown, but it is clear that an understanding of this process provides the key to effectively forecasting bloom recurrence, maintenance, and decline. Planktonic stages constitute an ephemeral phase of the life cycle of most species whereas resistant, benthic stages enable a species to withstand adverse conditions for prolonged periods, thus providing dormant reservoirs for eventual blooms and facilitating organismal dispersal. Here we review current knowledge of the life cycle strategies of major groups of HAB producers in marine and brackish waters. Rather than providing a comprehensive discussion, the objective was to highlight several of the research milestones that have changed our understanding of the plasticity and frequency of the different life cycle stages as well as the transitions between them. We also discuss the relevance of benthic and planktonic forms and their implications for HAB dynamics. (C) 2018 Published by Elsevier B.V.	[Isabel Figueroa, Rosa] CO Vigo, IEO, Vigo 36280, Spain; [Isabel Figueroa, Rosa] Lund Univ, Aquat Ecol Div, Dept Biol, S-22362 Lund, Sweden; [Estrada, Marta; Garces, Esther] CSIC, Inst Ciencies Mar, Dept Biol Marina & Oceanog, Pg Maritim Barceloneta 37-49, E-08003 Barcelona, Spain	Spanish Institute of Oceanography; Lund University; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Centro Mediterraneo de Investigaciones Marinas y Ambientales (CMIMA); CSIC - Instituto de Ciencias del Mar (ICM)	Figueroa, RI (通讯作者)，CO Vigo, IEO, Vigo 36280, Spain.	rosa.figueroa@ieo.es	Estrada, Marta/L-6207-2014; Garces, Esther/C-5701-2011; Figueroa, Rosa/M-7598-2015	Garces, Esther/0000-0002-2712-501X; Figueroa, Rosa/0000-0001-9944-7993	FORMAS (Sweden) [Formas 215-2010-824]	FORMAS (Sweden)(Swedish Research Council Formas)	We thank A. Kremp for providing useful comments to the chapter. R.I. Figueroa was funded by a FORMAS (Sweden) project (Formas 215-2010-824). 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J	Yang, AA; Hu, ZX; Tang, YZ				Yang Aoao; Hu Zhangxi; Tang Yingzhong			Solid sand particle addition can enhance the production of resting cysts in dinoflagellates	JOURNAL OF OCEANOLOGY AND LIMNOLOGY			English	Article						sand; resting cyst; encystment; Scrippsiella trochoidea; Biecheleria brevisulcata; Levanderina fissa	HARMFUL ALGAL BLOOMS; SCRIPPSIELLA-TROCHOIDEA DINOPHYCEAE; BALLAST WATER; GYMNODINIUM-CATENATUM; GYRODINIUM-INSTRIATUM; ENCYSTMENT; MORPHOLOGY; TEMPERATURE; CULTURE; SEA	Resting cysts are an important part of the life cycle for many harmful algal bloom-forming dinoflagellates, and play vital roles in the recurrence and geographical spread of harmful algal blooms. Numerous factors have been suggested to regulate the formation of resting cysts, although only a few have been proven to be significant. Cyst formation can be induced by adverse environmental conditions such as drastic changes in temperature, light, salinity, and nutrient levels, and by biological interactions. In this study, we evaluated the ability of an artificial factor (fine sand particles) to enhance the formation of resting cysts. Fine sand particles were added to cultures of dinoflagellates that are known to produce cysts. The addition of fine sand particles significantly increased both the production rate and final yield of cysts in cultures of Scrippsiella trochoidea, Biecheleria brevisulcata, and Levanderina fissa (=Gymnodinium fissum, Gyrodinium instriatum, Gyrodinium uncatenum). The largest increase in the final yield (107-fold) of cysts as a result of sand addition was in S. trochoidea. However, addition of fine sand particles did not induce cyst formation, or barely affected cyst formation, in Akashiwo sanguinea, Cochlodinium polykrikoides and Pheopolykrikos hartmannii, which are also known to be cyst-producing species. We speculated that addition of sand significantly increased the chances of cell collision, which triggered cyst formation. However, further research is required to test this idea. Importantly, our findings indicate that the addition of fine sand particles is a useful method to obtain a large quantity of cysts in a short time for laboratory studies or tests; for example, if a cyst viability test is being used to assess the effectiveness of ships' ballast water treatment.	[Yang Aoao; Hu Zhangxi; Tang Yingzhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Yang Aoao] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Tang Yingzhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS; Laoshan Laboratory	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023		NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]; National Natural Science Foundation of China [41476142, 61533011, 41506143]; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science [2016ASKJ02]; NSFC-Guangdong Joint Fund [U1301235]	NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science; NSFC-Guangdong Joint Fund	Supported by the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences (No. U1606404), the National Natural Science Foundation of China (Nos. 41476142, 61533011, 41506143), the Scientific and Technological Innovation Project supported by the Qingdao National Laboratory for Marine Science (No. 2016ASKJ02), and the NSFC-Guangdong Joint Fund (No. U1301235)	ANDERSON DM, 1988, J PHYCOL, V24, P255; Anderson DM, 1997, LIMNOL OCEANOGR, V42, P1009, DOI 10.4319/lo.1997.42.5_part_2.1009; ANDERSON DM, 1985, J PHYCOL, V21, P200; Anderson DM, 2009, OCEAN COAST MANAGE, V52, P342, DOI 10.1016/j.ocecoaman.2009.04.006; Balkis N, 2016, PHYCOLOGIA, V55, P187, DOI 10.2216/15-93.1; Bolch CJS, 2007, HARMFUL ALGAE, V6, P465, DOI 10.1016/j.hal.2006.12.008; Bravo Isabel, 2014, Microorganisms, V2, P11; Chambouvet A, 2011, PROTIST, V162, P637, DOI 10.1016/j.protis.2010.12.001; Figueroa RI, 2005, PHYCOLOGIA, V44, P658, DOI 10.2216/0031-8884(2005)44[658:EONFAD]2.0.CO;2; Gu HF, 2008, J PHYCOL, V44, P478, DOI 10.1111/j.1529-8817.2008.00478.x; Guillard R. 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Oceanol. Limnol.	MAR	2018	36	2					273	280		10.1007/s00343-018-6291-x	http://dx.doi.org/10.1007/s00343-018-6291-x			8	Limnology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	GF1AA					2025-03-11	WOS:000431662200008
J	Crawford, DW; Cefarelli, AO; Wrohan, IA; Wyatt, SN; Varela, DE				Crawford, David W.; Cefarelli, Adrian O.; Wrohan, Ian A.; Wyatt, Shea N.; Varela, Diana E.			Spatial patterns in abundance, taxonomic composition and carbon biomass of nano-and microphytoplankton in Subarctic and Arctic Seas	PROGRESS IN OCEANOGRAPHY			English	Article						Phytoplankton; Carbon; Taxonomy; Arctic; Subarctic; Marine; Ocean	PHYTOPLANKTON COMMUNITY STRUCTURE; NORTHERN BAFFIN-BAY; BEAUFORT SEA; SURFACE WATERS; PIGMENT SIGNATURES; NUTRIENT DYNAMICS; CHLOROPHYLL-A; OCEAN; DIATOMS; VARIABILITY	In the summers of 2007 and 2008, we studied assemblages of nano-and microphytoplankton from the subsurface chlorophyll maximum (SCM) across five broad oceanographic domains in the seas surrounding northern North America. These domains are the eastern Subarctic North Pacific (ESNP), Bering and Chukchi Seas (BE-CH), Beaufort Sea and Canada Basin (BS-CB), Canadian Arctic Archipelago (CAA), and Baffin Bay and Labrador Sea (BB-LS). Average abundance and total carbon biomass (C) of phytoplankton (> 2 mu m) varied 10-fold and -20-fold, respectively, across the five domains. In the BE-CH, CAA and BB-LS, diatoms averaged 35-70% and dinoflagellates 11-45% of total phytoplankton C (> 2 pm), whereas in the ESNP and BS-CB, unidentified flagellates/coccoids (2-8 mu m) represented a greater proportion of total C (27% and 39% respectively) than in the other domains. In the BE-CH and BB-LS, phytoplankton C (> 2 gm) was dominated by dinoflagellates of the genus Gymnodinium, centric diatoms including Thalassiosira spp. and Chaetoceros spp., unidentified flagellates/coccoids (2-8 gm), and cryptomonads. In contrast, diatoms such as Thalassiosira spp. and its resting spores dominated C in the CAA, with dinoflagellates being less significant than in the BE-CH and BB-LS. Unidentified flagellates/coccolds (2-8 pm), Gymnodinium spp., and cryptomonads dominated in the ESNP, and particularly in the BS-CB, where diatoms contributed only 18% of the very low levels of total phytoplankton C (> 2 mu m). Phytoplankton C (> 2 mu m) to chlorophyll a ratios (phyto C:chl a) averaged only 31 g C g chl alpha(-1) in the oligotrophic BS-CB domain, and 51-150 g C g chl alpha(-1) in the other domains, whereas ratios of biogenic silica to phytoplankton C (> 2 mu m) (bSi:phyto C) were lowest in the eastern domains. Estimates of phytoplankton C were highly sensitive to the choice of C to cell volume equations (C:vol) adopted in the calculations, particularly in diatom-rich areas. This study highlights how diatoms and dinoflagellates are the main drivers of large-scale variations in C biomass for phytoplankton (> 2 mu m), whereas unidentified flagellates/coccoids (2-8 mu m) make a significant contribution to C biomass in oligotrophic domains, such as BS-CB, where diatoms and dinoflagellates are less abundant. Reduced surface water density (sigma(T)) was associated with deeper SCM layers, and with decreased C biomass of unidentified flagellates/coccoids (2-8 mu m). These observations confirm recent studies highlighting the role of surface water stratification caused by melting sea ice in shaping nano-and microphytoplankton assemblages.	[Crawford, David W.; Cefarelli, Adrian O.; Wyatt, Shea N.; Varela, Diana E.] Univ Victoria, Dept Biol, POB 1700, Victoria, BC V8W 2Y2, Canada; [Wrohan, Ian A.; Varela, Diana E.] Univ Victoria, Sch Earth & Ocean Sci, Victoria, BC V8W 2Y2, Canada; [Cefarelli, Adrian O.] Consejo Nacl Invest Cient & Tecn, Ctr Invest & Transferencia Golfo San Jorge, RA-9000 Comodoro Rivadavia, Chubut, Argentina	University of Victoria; University of Victoria; Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET)	Varela, DE (通讯作者)，Univ Victoria, Dept Biol, POB 1700, Victoria, BC V8W 2Y2, Canada.	dvarela@uvic.ca	Crawford, David/AAS-9927-2020; Crawford, David W./B-5679-2012	Wyatt, Shea/0000-0002-4597-4517; Crawford, David W./0000-0003-2948-1007	Canadian IPY-C3O project; Natural Sciences and Engineering Research Council (NSERC) of Canada; University of Victoria Faculty of Graduate Studies; NSERC USRA scholarship; NSERC CGS-D scholarship; Emerging Leaders in the Americas program from Foreign Affairs, Trade and Development Canada	Canadian IPY-C3O project; Natural Sciences and Engineering Research Council (NSERC) of Canada(Natural Sciences and Engineering Research Council of Canada (NSERC)); University of Victoria Faculty of Graduate Studies; NSERC USRA scholarship(Natural Sciences and Engineering Research Council of Canada (NSERC)); NSERC CGS-D scholarship(Natural Sciences and Engineering Research Council of Canada (NSERC)); Emerging Leaders in the Americas program from Foreign Affairs, Trade and Development Canada	We extend our appreciation to the scientists, officers, and crew members of the CCGS Louis S. St-Laurent and CCGS Sir Wilfrid Laurier. We specially thank Eddy Carmack, Jane Eert, R. John Nelson, Bon van Hardenberg, Sarah Zimmerman, Bill Williams and Svein Vagle from the Arctic group at the Institute of Ocean Sciences (Sidney, BC). We also thank Andrey Proshutinsky (PI, NSF Beaufort Gyre Exploration Project) and Fiona McLaughlin (PI, Canadian JOIS) for ship time in the Canada Basin. We thank Brent Gowen for his expertise and assistance with electron microscopy, and Karina Giesbrecht for help with graphics. Financial support was provided by the Canadian IPY-C3O project lead by Eddy Carmack (D.E.V., co-PI), and by Discovery Individual and Northern Research Supplement grants from the Natural Sciences and Engineering Research Council (NSERC) of Canada awarded to D.E.V. Additional support was provided by the University of Victoria Faculty of Graduate Studies to I.A.W., by NSERC USRA and CGS-D scholarships to S.N.W., and by the Emerging Leaders in the Americas program from Foreign Affairs, Trade and Development Canada to A.O.C. We would particularly like to extend our sincere appreciation to two anonymous reviewers who provided thoughtful and extensive comments and criticisms that significantly improved the manuscript.	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Oceanogr.	MAR	2018	162						132	159		10.1016/j.pocean.2018.01.006	http://dx.doi.org/10.1016/j.pocean.2018.01.006			28	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	GE4DD		Green Published			2025-03-11	WOS:000431163600010
J	Gleason, FH; Lilje, O; Lange, L				Gleason, Frank H.; Lilje, Osu; Lange, Lene			What has happened to the "aquatic phycomycetes" (sensu Sparrow)? Part II: Shared properties of zoosporic true fungi and fungus-like microorganisms	FUNGAL BIOLOGY REVIEWS			English	Review						Cell wall chemistry; Chytridiomycota; Labyrinthulomycota; Oomycota; Perkinsozoa; Phytomyxea; Zoospore ultrastructure	SP-NOV; WASTING DISEASE; PLASMODIOPHORA-BRASSICAE; LABYRINTHULA-TERRESTRIS; MOLECULAR PHYLOGENY; MARINE ECOSYSTEMS; ECOLOGICAL ROLES; ZOSTERA-MARINA; LIFE-CYCLE; THRAUSTOCHYTRIDS	Many species of zoosporic heterotrophic parasites, saprotrophs and mutualists in the Phyla Perkinsozoa (dinoflagellates), Oomycota, Hyphochytriomycota, Labyrinthulomycota and Phyomyxea share morphological characteristics with zoosporic true fungi especially with some of the Chytridiomycota and with fungus-like organisms in the Phyla Mesomycetozoea, Chytridiomycota and Aphelidae. These characteristics include chemotactic motile zoospores, zoosporangia which produce zoospores, thick walled resistant cysts, rhizoid like structures, hyphal-like structures and cell walls surrounding the cells in several phases of their life cycle. These assemblages also inhabit both marine and freshwater ecosystems in which aquatic fungi and fungus-like organisms are found, have similar life cycles, grow on similar substrates, use similar infection strategies and infect some of the same host plants and animals. Many of these species were once included in the aquatic phycomycetes, an ecological assemblage of microorganisms but not a valid taxonomic group. Some of the shared characteristics are discussed in this review. (C) 2017 British Mycological Society. Published by Elsevier Ltd. All rights reserved.	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J	Cheniti, R; Rochon, A; Frihi, H				Cheniti, Radhia; Rochon, Andre; Frihi, Hocine			Ship traffic and the introduction of diatoms and dinoflagellates via ballast water in the port of Annaba, Algeria	JOURNAL OF SEA RESEARCH			English	Article						Shipping; Ballast water; Diatom; Dinoflagellate; Harmful taxa; Annaba, Algeria	HARMFUL ALGAL BLOOMS; SOUTHERN MEDITERRANEAN SEA; BIZERTE LAGOON; PROPAGULE PRESSURE; MARINE; TRANSPORT; TUNISIA; MANAGEMENT; ORGANISMS; INVASIONS	We present here the first study on the role of ship traffic in the introduction of potentially harmful and/or non-indigenous species in the port of Annaba (Algeria). A total of 25 ships of two different types (general cargo and bulk carriers) were sampled and separated into two categories: oceanic and Mediterranean ships. We estimated propagule pressure of high-risk coastal phytoplankton delivered in ballast water to the port of Annaba. We identified 40 diatom and 38 dinoflagellate taxa, among which, 11 harmful/toxictaxa: Pseudo-nitzschia spp., Alexandrium tamarense, Alexandrium sp., Dinophysisacuminata, Dinophysisrotundata, Dinophysis sp., Gonyaulax spinifera, Gymnodinium catenatum, Lingulodinium polyedrum, Protoceratium reticulatum and cyst of Alexandrium sp. In addition, 8 taxa (5 diatoms, 1 dinoflagellate and 2 dinoflagellate cysts) never observed in the Annaba region were considered as potentially non-indigenous: Actinoptychus splendens, Coscinodiscus asteromphalus, Coscinodiscus lineatus, Odentella granulata, Thalassiosira cf. decipiens, Prorocentrum scutellum, cyst of Polykrikos kofoidii and Islandinium minutum. Several factors were examined, including ship routes, ballast water age and the volume of ballast water discharged. Our analyses revealed that diatom and dinoflagellate abundances decreased with ballast water age, possibly as a result of mortality of species due to voyage length and lack of light in ballast tanks. Estimates of actual propagule pressure, diatoms and dinoflagellates abundances varied from 1 to 4 x 10(8) cells/ship. The results of this study could serve as the baseline for the development and implementation of monitoring and ballast water management programs in ports of Algeria.	[Cheniti, Radhia; Frihi, Hocine] Annaba Univ Badji Mokhtar, Marine Bioresources Lab, Annaba, Algeria; [Rochon, Andre] ISMER UQAR, 310 Allee Ursulines, Rimouski, PQ G5L 3A1, Canada	University of Quebec; Universite du Quebec a Rimouski	Cheniti, R (通讯作者)，Annaba Univ Badji Mokhtar, Marine Bioresources Lab, Annaba, Algeria.; Rochon, A (通讯作者)，ISMER UQAR, 310 Allee Ursulines, Rimouski, PQ G5L 3A1, Canada.	radhia.cheniti@gmail.com; andre_rochon@uqar.ca	Hocine, FREHI/R-8856-2016	FRIHI, Hocine/0000-0001-8104-2875				[Anonymous], 2004, INT CONVENTION CONTR; Armi Z, 2011, AFR J AQUAT SCI, V36, P47, DOI 10.2989/16085914.2011.559688; Briand F., 2010, CIESM WORKSHOP MONOG, V40; CARLTON JT, 1985, OCEANOGR MAR BIOL, V23, P313; *CIESM, 2002, CIESM WORKSH MON, V20; Colautti RI, 2004, DIVERS DISTRIB, V10, P135, DOI 10.1111/j.1366-9516.2004.00061.x; Daoudi M., 2012, Transitional Waters Bulletin, V6, P4; David M, 2007, MAR POLLUT BULL, V54, P53, DOI 10.1016/j.marpolbul.2006.08.041; Dickman M, 1999, MAR ECOL PROG SER, V176, P253, DOI 10.3354/meps176253; Dobler J.P., 2002, P ALIEN MARINE ORGAN, VVolume 20, P19; Dodge J.D., 1982, MARINE DINOFLAGELLAT, DOI DOI 10.37543/OCEANIDES.V25I1.79; Endresen O, 2004, MAR POLLUT BULL, V48, P615, DOI 10.1016/j.marpolbul.2004.01.016; Endresen O., 2002, MARINE SCI TECHNOLOG, V2002; Fernandez-Tejedor Margarita, 2010, CIESM Workshop Monographs, V40, P83; Flagella MM, 2006, OCEAN COAST MANAGE, V49, P947, DOI 10.1016/j.ocecoaman.2006.08.009; Frehi H, 2007, CR BIOL, V330, P615, DOI 10.1016/j.crvi.2007.05.002; Gomez F., 2013, CICIMAR Oceanides, V28, P1; Gomez Fernando, 2001, Harmful Algae News, V22, P1; Gomoiu MT, 2002, INVASIVE AQUATIC SPECIES OF EUROPE: DISTRIBUTION, IMPACTS AND MANAGEMENT, P341; Guelorget O., 1992, AQUA REV, V41, P21; Hallegraeff GM, 1998, MAR ECOL PROG SER, V168, P297, DOI 10.3354/meps168297; HALLEGRAEFF GM, 1992, J PLANKTON RES, V14, P1067, DOI 10.1093/plankt/14.8.1067; Illoul H., 2014, THESIS; Illoul H, 2008, CRYPTOGAMIE ALGOL, V29, P261; *IMO, 2003, INT CONV CO IN PRESS; IMO, 2017, INT CONV CONTR MAN S; Ismael AA, 2000, P 9 INT C HARMF ALG, P141; Joutei LT, 1995, HARMFUL ALGAE NEWS, V7, P12; Khairy HM, 2014, REV BIOL MAR OCEANOG, V49, P267, DOI 10.4067/S0718-19572014000200007; Klein G, 2010, BIOL INVASIONS, V12, P1031, DOI 10.1007/s10530-009-9520-6; Lavoie DM, 1999, ESTUAR COAST SHELF S, V48, P551, DOI 10.1006/ecss.1999.0467; Lawrence DJ, 2010, BIOL CONSERV, V143, P700, DOI 10.1016/j.biocon.2009.12.008; Aguirre-Macedo ML, 2008, MAR POLLUT BULL, V56, P1570, DOI 10.1016/j.marpolbul.2008.05.022; Lockwood JL, 2005, TRENDS ECOL EVOL, V20, P223, DOI 10.1016/j.tree.2005.02.004; Lockwood JL, 2009, DIVERS DISTRIB, V15, P904, DOI 10.1111/j.1472-4642.2009.00594.x; MARGALEF R, 1987, Investigacion Pesquera (Barcelona), V51, P121; McGee S, 2006, MAR POLLUT BULL, V52, P1634, DOI 10.1016/j.marpolbul.2006.06.005; Meunier A., 1915, MEM B I R SCI NAT BE, V7; Mohamed-Cherif F. 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J	Couet, D; Pringault, O; Bancon-Montigny, C; Briant, N; Poulichet, FE; Delpoux, S; Kefi-Daly Yahia, O; Ben Gharbia, H; M'Rabet, C; Hervé, F; Rovillon, G; Amzil, Z; Laabir, M				Couet, Douglas; Pringault, Olivier; Bancon-Montigny, Chrystelle; Briant, Nicolas; Poulichet, Francoise Elbaz; Delpoux, Sophie; Kefi-Daly Yahia, Ons; Ben Gharbia, Hela; M'Rabet, Charaf; Herve, Fabienne; Rovillon, Georges; Amzil, Zouher; Laabir, Mohamed			Effects of copper and butyltin compounds on the growth, photosynthetic activity and toxin production of two HAB dinoflagellates: The planktonic <i>Alexandrium catenella</i> and the benthic <i>Ostreopsis</i> cf. <i>ovata</i>	AQUATIC TOXICOLOGY			English	Article						Alexandrium catenella; Ostreopsis cf. ovata; Cu; Butyltin; Photosynthesis; Toxins	HARMFUL ALGAL BLOOMS; ORGANOTIN COMPOUNDS; MARINE-ENVIRONMENT; CHLAMYDOMONAS-REINHARDTII; AMPHIDINIUM-CARTERAE; SKELETONEMA-COSTATUM; PHOTOSYSTEM-II; ACUTE TOXICITY; TRACE-METALS; FRESH-WATER	Controlled laboratory experiments were conducted to test the effects of copper (Cu2+) and butyltins (BuT) on the growth, photosynthetic activity and toxin content of two HABs (Harmful Algal Blooms) dinoflagellates, the planktonic Alexandrium catenella and the benthic Ostreopsis cf. ovata. Microalgae were exposed to increasing concentrations of Cu2+ (10(-4) to 31 nM) or BuT (0.084 to 84 nM) for seven days. When considering the growth, EC50 values were 0.16 (+/- 0.09) nM and 0.03 (+/- 0.02) nM of Cu2+ for A. catenella and O. cf. ovata, respectively. Regarding BuT, EC50 was 14.2 (+/- 6) nM for O. cf. ovata, while A. catenella growth inhibition appeared at BuT concentrations >= 27 nM. Photosynthetic activity of the studied dinoflagellates decreased with increasing Cu and BuT concentrations. For O. cf. ovata, the response of this physiological parameter to contamination was less sensitive than the biomass. Cu exposure induced the formation of temporary cysts in both organisms that could resist adverse conditions. The ovatoxin-a and-b concentrations in O. cf. ovata cells increased significantly in the presence of Cu. Altogether, the results suggest a better tolerance of the planktonic A. catenella to Cu and BuT. This could result in a differentiated selection pressure exerted by these metals on phytoplankton species in highly polluted waters. The over-production of toxins in response to Cu stress could pose supplementary health and socio-economic threats in the contaminated marine ecosystems where HABs develop.	[Couet, Douglas; Pringault, Olivier; Laabir, Mohamed] Montpellier Univ, CNRS, IFREMER,IRD, Ctr Marine Biodivers Exploitat & Conservat MARBEC, Pl Eugene Bataillon, F-34095 Montpellier, France; [Couet, Douglas; Kefi-Daly Yahia, Ons; Ben Gharbia, Hela; M'Rabet, Charaf] IRESA Carthage Univ, Tunisian Natl Inst Agron INAT, Res Grp Oceanog & Plankton Ecol, 43 Ave Charles Nicolle, Tunis 1082, Tunisia; [Bancon-Montigny, Chrystelle; Poulichet, Francoise Elbaz; Delpoux, Sophie] Univ Montpellier, CNRS, Hydrosci Montpellier, IRD, Montpellier, France; [Briant, Nicolas; Herve, Fabienne; Rovillon, Georges; Amzil, Zouher] IFREMER, Phycotoxins Lab, BP 21105, F-44311 Nantes, France	Ifremer; Institut de Recherche pour le Developpement (IRD); Universite de Montpellier; Centre National de la Recherche Scientifique (CNRS); Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Developpement (IRD); Universite de Montpellier; Ifremer	Laabir, M (通讯作者)，Montpellier Univ, CNRS, IFREMER,IRD, Ctr Marine Biodivers Exploitat & Conservat MARBEC, Pl Eugene Bataillon, F-34095 Montpellier, France.	mohamed.laabir@umontpellier.fr	Montigny, Chrystelle/ACN-3124-2022; Pringault, Olivier/A-7399-2008; MONTIGNY, Chrystelle/H-1993-2013	Ben Gharbia, Hela/0000-0002-9878-6915; DELPOUX, Sophie/0000-0003-0017-7423; Pringault, Olivier/0000-0003-2363-8376; Kefi Daly Yahia, Ons/0000-0001-9532-8989; MONTIGNY, Chrystelle/0000-0003-0734-7130; HERVE, Fabienne/0000-0002-5485-7611	LMI COSYSMED (Laboratoire Mixte International Contaminants et Ecosystemes Marins Sud Mediterraneens) belonging to IRD (Institut Francais de Recherche pour le Developpement); LAGUNOTOX project - Fondation TOTAL; IRD; French Ministry of Foreign Affairs	LMI COSYSMED (Laboratoire Mixte International Contaminants et Ecosystemes Marins Sud Mediterraneens) belonging to IRD (Institut Francais de Recherche pour le Developpement); LAGUNOTOX project - Fondation TOTAL; IRD; French Ministry of Foreign Affairs	This work was supported by the LMI COSYSMED (Laboratoire Mixte International Contaminants et Ecosystemes Marins Sud Mediterraneens) belonging to IRD (Institut Francais de Recherche pour le Developpement), and LAGUNOTOX project funded by Fondation TOTAL. We would also like to thank the IRD and French Ministry of Foreign Affairs for funding Douglas Couet in Tunisia in the framework of International Volunteers Program.	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J	Lee, SY; Jeong, HJ; You, JH; Kim, SJ				Lee, Sung Yeon; Jeong, Hae Jin; You, Ji Hyun; Kim, So Jin			Morphological and genetic characterization and the nationwide distribution of the phototrophic dinoflagellate <i>Scrippsiella lachrymosa</i> in the Korean waters	ALGAE			English	Article						Calciodinelloideae; dinoflagellate; DNA; ITS; qPCR; taxonomy	RED TIDES; COCHLODINIUM-POLYKRIKOIDES; PLANKTONIC DIATOMS; SURFACE SEDIMENTS; WESTERN KOREA; RESTING CYSTS; NORTH-SEA; BAY; DINOPHYCEAE; IDENTIFICATION	The phototrophic dinoflagellate genus Scrippsiella is known to have a worldwide distribution. Here, we report for the first time, the occurrence of Scrippsiella lachrymosa in Korean waters. Unlike the other stains of S. lachrymosa whose cultures had been established from cysts in the sediments, the clonal culture of the Korean strain of S. lachrymosa was established from motile cells. When the sulcal plates of S. lachrymosa, which have not been fully described to date, were carefully examined using scanning electron microscopy, the Korean strain of S. lachrymosa clearly exhibited the anterior sulcal plate (s.a.), right sulcal plate (s.d.), left sulcal plate (s.s.), median sulcal plate (s.m.), and posterior sulcal plate (s.p.). When properly aligned, the large subunit (LSU) rDNA sequence of the Korean strain of S. lachrymosa was ca. 1% different from those of two Norwegian strains of S. lachrymosa, the only strains for which LSU sequences have been reported. The internal transcribed spacer (ITS) rDNA sequence of the Korean strain of S. lachrymosa was also ca. 1% different from those of the Scottish and Chinese strains and 3% different from those of the Canadian, German, Greek, and Portuguese strains. Thus, the Korean S. lachrymosa strain has unique LSU and ITS sequences. The abundances of S. lachrymosa in the waters of 28 stations, located in the East, West, and South Sea of Korea, were quantified in four seasons from January 2016 to October 2017, using quantitative real-time polymerase chain reaction method and newly designed specific primer-probe sets. Its abundances were > 0.1 cells mL(-1) at eight stations in January and March 2016 and March 2017, and its highest abundance in Korean waters was 26 cells mL(-1). Thus, S. lachrymosa has a nationwide distribution in Korean waters as motile cells.	[Lee, Sung Yeon; Jeong, Hae Jin; You, Ji Hyun; Kim, So Jin] Seoul Natl Univ, Sch Earth & Environm Sci, Coll Nat Sci, Seoul 08826, South Korea; [Jeong, Hae Jin] Adv Inst Convergence Technol, Suwon 16229, South Korea	Seoul National University (SNU)	Jeong, HJ (通讯作者)，Seoul Natl Univ, Sch Earth & Environm Sci, Coll Nat Sci, Seoul 08826, South Korea.; Jeong, HJ (通讯作者)，Adv Inst Convergence Technol, Suwon 16229, South Korea.	hjjeong@snu.ac.kr	Jeong, hae/B-8908-2009	Jeong, Hae Jin/0000-0003-3310-4335	Useful Dinoflagellate program of Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF); KIMST, the National Research Foundation (NRF) - Ministry of Science and ICT [NRF-2015M1A5A1041806, NRF-2017R1E1A1A01074419]	Useful Dinoflagellate program of Korea Institute of Marine Science and Technology Promotion (KIMST) - Ministry of Oceans and Fisheries (MOF)(Korea Institute of Marine Science & Technology Promotion (KIMST)Ministry of Oceans & Fisheries (MOF), Republic of Korea); KIMST, the National Research Foundation (NRF) - Ministry of Science and ICT(Korea Institute of Marine Science & Technology Promotion (KIMST))	We thank Kyung Ha Lee, Jin Hee Ok, An Suk Lim, Hee Chang Kang, Se Hyeon Jang, Ji Eun Kwon, Jae Yeon Park, and Eun Young Yoon, for technical support. This research was supported by the Useful Dinoflagellate program of Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) and Management of marine organisms causing ecological disturbance and harmful effect Program of KIMST, the National Research Foundation (NRF) funded by the Ministry of Science and ICT (NRF-2015M1A5A1041806; NRF-2017R1E1A1A01074419) award to HJJ.	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J	David, M; Gollasch, S				David, Matej; Gollasch, Stephan			How to approach ballast water management in European seas	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Ballast water management; Harbours; Risks; Introduced species; Decision support	PROPAGULE PRESSURE; COLONIZATION PRESSURE; DINOFLAGELLATE CYSTS; SHIPS; MARINE; SEDIMENTS; INVASIONS; DISPERSAL; MODEL	The latest research continues to show that the ballast water issue is very complex, which makes it very challenging to manage. In 2004, the International Convention for the Control and Management of Ships' Ballast Water and Sediments (BWM Convention) was adopted to globally harmonize action against the transfer of harmful aquatic organisms and pathogens via ships' ballast water and related sediments. Analyses of the BWM Convention requirements, conducted through different research projects mainly aiming to provide support for the implementation of the BWM Convention, have shown that there are different steps countries need to take and that there are still some open issues which need to be solved. This paper presents some of the main issues identified and the core theoretical and applied measures required to solve these issues, with the aim to support more efficient and coordinated implementation of the BWM Convention requirements in EU seas. The approaches recommended here for the EU may be universally interesting for similar application in other areas of the world. (C) 2016 Elsevier Ltd. All rights reserved.	[David, Matej] Dr Matej David Consult, Korte 13e, SI-6310 Izola, Slovenia; [Gollasch, Stephan] GoConsult, Grosse Brunnenstr 61, DE-22763 Hamburg, Germany		David, M (通讯作者)，Dr Matej David Consult, Korte 13e, SI-6310 Izola, Slovenia.	matej.david@siol.net	Gollasch, Stephan/AAI-2041-2021; David, Matej/IQR-6321-2023	Gollasch, Stephan/0000-0003-4410-6969; David, Matej/0000-0003-0650-1730	European Union [266445]	European Union(European Union (EU))	The research leading to these results has received funding from the European Union's Seventh Framework Programme for research, technological development and demonstration (FP7/2007-2013) within the Ocean of Tomorrow call under Grant Agreement No.266445 for the project Vectors of Change in Oceans and Seas Marine Life, Impact on Economic Sectors (VECTORS). We like to thank Sarah Bailey (Fisheries and Oceans Canada, Great Lakes Laboratory for Fisheries and Aquatic Sciences, Burlington, Canada) for language editing and constructive comments on this manuscript.	[Anonymous], 2004, INT CONVENTION CONTR; [Anonymous], THESIS; [Anonymous], 1959, Archivio di Oceanografia e Limnologia, V11, P243; Bailey SA, 2007, AQUAT ECOSYST HEALTH, V10, P93, DOI 10.1080/14634980701193870; Bleich S, 2006, THESIS U ROSTOCK GER; Briski E, 2012, BIOL INVASIONS, V14, P1843, DOI 10.1007/s10530-012-0194-0; Briski E, 2012, P ROY SOC B-BIOL SCI, V279, P2990, DOI 10.1098/rspb.2011.2671; Carlton J. T., 1995, 6 RES NAT SEA GRANT; CARLTON JT, 1985, OCEANOGR MAR BIOL, V23, P313; Casale G. A., 2002, BALLAST WATER NEWS; Chan FT, 2015, P ROY SOC B-BIOL SCI, V282, DOI 10.1098/rspb.2014.1517; Colautti RI, 2006, BIOL INVASIONS, V8, P1023, DOI 10.1007/s10530-005-3735-y; Courts A. D. 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Coast. Shelf Sci.	FEB 5	2018	201				SI		248	255		10.1016/j.ecss.2016.10.018	http://dx.doi.org/10.1016/j.ecss.2016.10.018			8	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	FY9TP					2025-03-11	WOS:000427210100024
J	Trottet, A; Wilson, B; Xin, GSW; George, C; Casten, L; Schmoker, C; Rawi, NSBM; Siew, MC; Larsen, O; Eikaas, HS; Tun, K; Drillet, G				Trottet, Aurore; Wilson, Bryan; Xin, Genevieve Sew Wei; George, Christaline; Casten, Lemuel; Schmoker, Claire; Rawi, Nurul Syazana Binte Modh; Siew, Moon Chew; Larsen, Ole; Eikaas, Hans S.; Tun, Karenne; Drillet, Guillaume			Resting Stage of Plankton Diversity from Singapore Coastal Water: Implications for Harmful Algae Blooms and Coastal Management	ENVIRONMENTAL MANAGEMENT			English	Article						phytoplankton; zooplankton; bacteria; spores; cysts; dormancy	DINOFLAGELLATE CYST DISTRIBUTION; GRADIENT GEL-ELECTROPHORESIS; CALANOID COPEPOD EGGS; ACARTIA-TONSA DANA; RNA GENE DATABASE; 16S RIBOSOMAL-RNA; SEA-BOTTOM MUDS; BALLAST WATER; INLAND SEA; MORPHOLOGICAL-CHARACTERISTICS	Resting strategies of planktonic organisms are important for the ecological processes of coastal waters and their impacts should be taken into consideration in management of water bodies used by multiple industries. We combined different approaches to evaluate the importance of resting stages in Singapore coastal waters. We used molecular approaches to improve the knowledge on Singapore biodiversity, we sampled and extracted cysts from sediments to evaluate the density of resting stages in Johor Strait, and we compared systematically information on Singapore planktonic biodiversity to existing published information on resting stages from these reported organisms. This is the first study evaluating the importance of resting stages in Singapore waters. Above 120 species reported in Singapore are known to produce resting stages though no previous work has ever been done to evaluate the importance of these strategies in these waters. The results from the resting stage survey confirmed 0.66 to 5.34 cyst g(-1) dry weight sediment were present in the Johor Strait suggesting that cysts may be flushed by tidal currents into and out of the strait regularly. This also suggest that the blooms occurring in Singapore are likely due to secondary growth of Harmful Algae Bloom species in the water rather than from direct germination of cysts from sediment. Finally, we discuss the importance of these resting eggs for three main national industries in Singapore (shipping, marine aquaculture and provision of drinking water through seawater desalination). We argue that this study will serve as a baseline for some of the future management of Singapore waters.	[Trottet, Aurore; Xin, Genevieve Sew Wei; George, Christaline; Casten, Lemuel; Schmoker, Claire; Rawi, Nurul Syazana Binte Modh; Siew, Moon Chew; Larsen, Ole; Eikaas, Hans S.; Drillet, Guillaume] DHI Water & Environm Singapore, 1 CleanTech Loop,03-05 CleanTech One, Singapore 637141, Singapore; [Wilson, Bryan] Univ Bergen, Dept Biol, Marine Microbiol Res Grp, Thormohlensgate 53B, N-5020 Bergen, Norway; [Xin, Genevieve Sew Wei] Natl Univ Singapore, Dept Biol Sci, 14 Sci Dr 4, Singapore 117543, Singapore; [Tun, Karenne] Natl Pk Board, 1 Cluny Rd, Singapore 259569, Singapore	Danish Hydraulic Institute (DHI); University of Bergen; National University of Singapore	Trottet, A (通讯作者)，DHI Water & Environm Singapore, 1 CleanTech Loop,03-05 CleanTech One, Singapore 637141, Singapore.	auroretrottet@gmx.fr	Drillet, Guillaume/B-6608-2009; Trottet, Aurore/KIE-3763-2024; Trottet, Aurore/Y-2389-2018	Drillet, Guillaume/0000-0001-5908-0568; Wilson, Bryan/0000-0001-9000-2920; Trottet, Aurore/0000-0003-2628-6732	National Parks of Singapore; DHI-NTU Research Centre; Danish Agency for Science Technology and Innovation [10-093759, 10-094773]	National Parks of Singapore; DHI-NTU Research Centre; Danish Agency for Science Technology and Innovation	We thank the National Parks of Singapore, the DHI-NTU Research Centre for the financial support of the project "Made In Plankton". The work was also supported by Elite Forsk grants nb 10-093759 and 10-094773 from the Danish Agency for Science Technology and Innovation to Guillaume Drillet. Finally, we would like to thank the entire plankton team from the Environmental Laboratories in Singapore for their continuous support and attitude toward new challenges. The authors would like to thank the two anonymous reviewers provided helpful comments on previous versions of the manuscript.	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J	Zhang, Y; Yu, ZM; Song, XX; Yuan, YQ; Cao, XH				Zhang, Yue; Yu, Zhiming; Song, Xiuxian; Yuan, Yongquan; Cao, Xihua			Effects of modified clay used for the control of harmful algal blooms on <i>Alexandrium pacificum</i> cysts	HARMFUL ALGAE			English	Article						Modified clay; Alexandrium pacificum; Cyst; Encystment; Germination	SPECIES COMPLEX DINOPHYCEAE; TAMARENSE DINOPHYCEAE; TOXIC DINOFLAGELLATE; RESTING CYSTS; GONYAULAX-TAMARENSIS; SHELLFISH TOXICITY; FUNDYENSE CYST; RED TIDE; GERMINATION; GULF	Cyst formation plays an important role in the resistance of dinofiagellates to adverse environments, and cyst germination is considered one of the causes of harmful algal blooms (HABs). Among the methods for mitigating HABs, modified clay (MC) is considered a promising strategy because of its high efficiency and low environmental impacts. The typical HAB species Alexandrium pacificum was focused on in this study to clarify the effects of MC on cyst formation and germination. The results showed that more than 90% of the vegetative cells were removed under the 0.6 g/L. MC treatment. The vegetative cell density was monitored over 90 d and increased slightly to the peak at 10 d after the cell removal experiment, but persistent growth was not observed. The amount of cysts was maximal at 20 d after removal, however, most of the cysts were temporary cysts that subsequently disappeared. After 80 d, all the remaining cysts were resting ones. The total density of resting cysts was higher under MC concentrations of 0.2 and 0.4 g/L and lower under concentrations of 0.6, 0.8 and 1.0 g/L compared with that in the control. The total formation rate of resting cysts was 29.6% in the control group, and the lowest formation rate in the experimental groups was 15.5% at 0.6 g/L. MC. The total germination rate of resting cyst decreased as the MC concentration increased, and approximately 68.0% of the resting cysts in the control group germinated successfully, whereas the addition of MC reduced the germination rate to as low as 12.4%. Our results indicated that the application of appropriate MC concentrations may provide an effective mitigation strategy for A. pacificum blooms because it does not leave more residual cysts, which can act as "seeds" for the initiation of HABs. (C) 2017 Elsevier B.V. All rights reserved.	[Zhang, Yue; Yu, Zhiming; Song, Xiuxian; Yuan, Yongquan; Cao, Xihua] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Zhang, Yue; Yu, Zhiming; Song, Xiuxian] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China; [Zhang, Yue; Yu, Zhiming; Song, Xiuxian; Yuan, Yongquan; Cao, Xihua] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Song, XX (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	songxx@qdio.ac.cn		Zhang, Yue/0000-0002-4427-6127; YUAN, Yongquan/0000-0002-1337-4744; Yu, Zhiming/0000-0003-0377-1129	National Key R&D Program of China [2017YFC1404300]; Programs of the Qingdao National Laboratory for Marine Science and Technology [2016ASKJ02-3]; National Natural Science Foundation of China [41276115]	National Key R&D Program of China; Programs of the Qingdao National Laboratory for Marine Science and Technology; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	The authors would like to thank Dr. Zhangxi Hu for his kind help during the experiment. 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J	Salgado, P; Fraga, S; Rodríguez, F; Bravo, I				Salgado, Pablo; Fraga, Santiago; Rodriguez, Francisco; Bravo, Isabel			Benthic flattened cells of the phylogenetically related marine dinoflagellates <i>Protoceratium reticulatum</i> and <i>Ceratocorys mariaovidiorum</i> (Gonyaulacales): a new type of cyst?	JOURNAL OF PHYCOLOGY			English	Article						benthic; Ceratocorys mariaovidiorum; Dinoflagellate; flattened cell; planktonic-benthic coupling; Protoceratium reticulatum; thin non-reticulated plates	ALEXANDRIUM-TAYLORI DINOPHYCEAE; LIFE-HISTORY; PFIESTERIA-PISCICIDA; BLOOM; CYCLES; ENCYSTMENT; SEXUALITY; RECURRENT; DYNAMICS; STRAINS	A planktonic-benthic relationship has been described for many dinoflagellate species as part of their ecological strategy to overcome highly variable aquatic environments. Here, the phylogenetically and morphologically related marine dinoflagellates Protoceratium reticulatum and Ceratocorys mariaovidiorum were studied in relation to an unknown benthic life form. In vivo and fixed samples from cultures were analyzed in detail by light and scanning electron microscopy. In both species, a cell type with a morphology different from that of vegetative cells was observed in cultures grown until stationary phase. This cell type was always benthic, swimming sporadically only when it was disturbed. Its main feature included a strong dorsoventral compression. These cells originated from vegetative cells whose protoplasm underwent a progressive flattening, resulting in a gradual detachment of the reticulate and thick thecal plates and the formation of very thin non-reticulated new plates with pores. When returned to fresh full-strength medium, the cells recovered their spherical vegetative-like morphology, including new reticulated thick plates and subsequent cell divisions. The kinetics of flattened cell formation showed that in both species, this cell type increased exponentially until the onset of the culture stationary phase and then decreased. The results of this study are discussed in the context of the planktonic-benthic coupling in dinoflagellate life cycles, including those newly appreciated to be well adapted to the benthic environment.	[Salgado, Pablo] Inst Fomento Pesquero IFOP, Dept Medio Ambiente, Div Invest Acuicultura, Enrique Abello 0552,Casilla 101, Punta Arenas, Chile; [Salgado, Pablo; Fraga, Santiago; Rodriguez, Francisco; Bravo, Isabel] IEO, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain	Instituto de Fomento Pesquero (Valparaiso); Spanish Institute of Oceanography	Salgado, P (通讯作者)，Inst Fomento Pesquero IFOP, Dept Medio Ambiente, Div Invest Acuicultura, Enrique Abello 0552,Casilla 101, Punta Arenas, Chile.; Salgado, P (通讯作者)，IEO, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain.	pablo.salgado@ifop.cl	Salgado, Pablo/KMA-0636-2024; Bravo, Isabel/D-3147-2012; Fraga, Santiago/AAA-3760-2020; Rodriguez, Francisco/A-5934-2019	Bravo, Isabel/0000-0003-3764-745X; Rodriguez, Francisco/0000-0002-6918-4771; Salgado, Pablo/0000-0002-4168-3675	CCVIEO project; Spanish National Project CICAN [CGL2013-40671-R]; Instituto de Fomento Pesquero (IFOP)	CCVIEO project; Spanish National Project CICAN; Instituto de Fomento Pesquero (IFOP)	We thank Isabel Ramilo and Pilar Rial for technical support. The present work was funded by the CCVIEO project and the Spanish National Project CICAN (CGL2013-40671-R). This article is going to be part of the thesis of Pablo Salgado that is attached to the framework of the doctoral program "Marine Science, Technology and Management" (DO*MAR) of the University of Vigo. P. Salgado is a researcher at the Instituto de Fomento Pesquero (IFOP), which has provided financial support for his doctoral stay at the Instituto Espanol de Oceanografia (IEO) in Vigo.	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J	Lewis, J; Taylor, JD; Neale, K; Leroy, SAG				Lewis, Jane; Taylor, Joe D.; Neale, Klaire; Leroy, Suzanne A. G.			Expanding known dinoflagellate distributions: investigations of slurry cultures from Caspian Sea sediment	BOTANICA MARINA			English	Article						Caspian Sea; Gonyaulax baltica; Gymnodinium aureolum; Kryptoperidinium foliaceum	CYST-THECA RELATIONSHIP; SP-NOV; COMB.-NOV; PHYLOGENETIC ANALYSIS; GYMNODINIUM-AUREOLUM; GONYAULAX-BALTICA; PHYTOPLANKTON; DINOPHYCEAE; CHECKLIST; SALINITY	To investigate the disparity between plankton and cyst records, sediment slurry cultures were used to isolate the motile stage of dinoflagellates from Caspian Sea sediment. This has resulted in new records for this area of Kryptoperidinium foliaceum, Gymnodinium aureolum and Woloszynskia sp. and for the cyst record, Scrippsiella acuminata. Two Gonyaulax species were isolated, one was identified as Gonyaulax baltica and the other an unknown species. Cultures of Lingulodinium polyedra were also isolated. The approach of using slurries was useful to provide cultures from sediments that were relatively poor in dinoflagellate cysts with contents.	[Lewis, Jane; Neale, Klaire] Univ Westminster, Fac Sci & Technol, Dept Life Sci, 115 New Cavendish St, London W1W 6UW, England; [Taylor, Joe D.] Univ Salford, Fac Sci & Technol, Dept Life Sci, 115 New Cavendish St, London W1W 6UW, England; [Taylor, Joe D.] Univ Salford, Sch Environm & Life Sci, Peel Bldg, Salford M5 4WT, Lancs, England; [Leroy, Suzanne A. G.] Ctr Europeen Rech & Enseignement Geosci Environm, Technopole Arbois, F-13545 Aix En Provence 4, France	University of Westminster; University of Salford; University of Salford; Aix-Marseille Universite	Lewis, J (通讯作者)，Univ Westminster, Fac Sci & Technol, Dept Life Sci, 115 New Cavendish St, London W1W 6UW, England.	lewisjm@westminster.ac.uk	Taylor, Joe/JCD-8107-2023; Taylor, Joe/F-2196-2015	Taylor, Joe/0000-0003-0095-0869				Bagheri S., 2014, Caspian Journal of Environmental Sciences, V12, P81; Bagheri Siamak, 2011, American Journal of Applied Sciences, V8, P1328, DOI 10.3844/ajassp.2011.1328.1336; Bagheri S, 2012, J MAR BIOL ASSOC UK, V92, P1243, DOI 10.1017/S0025315412000094; Bagheri S, 2012, EKOLOJI, V21, P32, DOI 10.5053/ekoloji.2012.834; Bagheri Siamak, 2010, World Journal of Fish and Marine Sciences, V2, P416; Bolch CJS, 1997, PHYCOLOGIA, V36, P472, DOI 10.2216/i0031-8884-36-6-472.1; Dodge J.D., 1982, MARINE DINOFLAGELLAT, DOI DOI 10.37543/OCEANIDES.V25I1.79; Dumont HJ, 1998, LIMNOL OCEANOGR, V43, P44, DOI 10.4319/lo.1998.43.1.0044; Ellegaard M, 2003, PHYCOLOGIA, V42, P151, DOI 10.2216/i0031-8884-42-2-151.1; Ellegaard M, 2002, J PHYCOL, V38, P775, DOI 10.1046/j.1529-8817.2002.01062.x; FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x; Figueroa RI, 2009, PROTIST, V160, P285, DOI 10.1016/j.protis.2008.12.003; Ganjian A, 2010, IRAN J FISH SCI, V9, P382; Gogorev R., 2006, Caspian Sea Biodiversity Project; Gömez F, 2004, HYDROBIOLOGIA, V517, P43, DOI 10.1023/B:HYDR.0000027336.05452.07; Gómez F, 2003, BOT MAR, V46, P215, DOI 10.1515/BOT.2003.021; Guillard RRL., 1973, HDB PHYCOLOGICAL MET, P69; Hansen G, 2000, J PHYCOL, V36, P394, DOI 10.1046/j.1529-8817.2000.99172.x; Hoppenrath M., 2009, KL SENCKENBERG-REIHE, V49, P264; Kazanci N, 2004, J MARINE SYST, V46, P145, DOI 10.1016/j.jmarsys.2003.12.002; Kideys A. 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Marina	FEB	2018	61	1					21	31		10.1515/bot-2017-0041	http://dx.doi.org/10.1515/bot-2017-0041			11	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	FU2KU		Green Accepted, Green Submitted			2025-03-11	WOS:000423679800003
J	Ellegaard, M; Ribeiro, S				Ellegaard, Marianne; Ribeiro, Sofia			The long-term persistence of phytoplankton resting stages in aquatic 'seed banks'	BIOLOGICAL REVIEWS			English	Review						cyst; spore; microalgae; dinoflagellate; diatom; long-term viability; sediment record; seed bed	DIATOM CHAETOCEROS-PSEUDOCURVISETUS; MARINE PLANKTONIC DIATOM; BET-HEDGING GERMINATION; SEXUAL REPRODUCTION; SPORE FORMATION; LIFE-CYCLE; THALASSIOSIRA-ANTARCTICA; BIOCHEMICAL-COMPOSITION; GYMNODINIUM-CATENATUM; DINOFLAGELLATE CYST	In the past decade, research on long-term persistence of phytoplankton resting stages has intensified. Simultaneously, insight into life-cycle variability in the diverse groups of phytoplankton has also increased. Aquatic 'seed banks' have tremendous significance and show many interesting parallels to terrestrial seed beds of vascular plants, but are much less studied. It is therefore timely to review the phenomenon of long-term persistence of aquatic resting stages in sediment seed banks. Herein we compare function, morphology and physiology of phytoplankton resting stages to factors central for persistence of terrestrial seeds. We review the types of resting stages found in different groups of phytoplankton and focus on the groups for which long-term (multi-decadal) persistence has been shown: dinoflagellates, diatoms, green algae and cyanobacteria. We discuss the metabolism of long-term dormancy in phytoplankton resting stages and the ecological, evolutionary and management implications of this important trait. Phytoplankton resting stages exhibiting long-term viability are characterized by thick, often multi-layered walls and accumulation vesicles containing starch, lipids or other materials such as pigments, cyanophycin or unidentified granular materials. They are reported to play central roles in evolutionary resilience and survival of catastrophic events. Promising areas for future research include the role of hormones in mediating dormancy, elucidating the mechanisms behind metabolic shut-down and testing bet-hedging hypotheses.	[Ellegaard, Marianne] Univ Copenhagen, Dept Plant & Environm Sci, Frederiksberg 1871, Denmark; [Ribeiro, Sofia] Geol Survey Denmark & Greenland GEUS, Glaciol & Climate Dept, DK-1350 Copenhagen K, Denmark	University of Copenhagen; Geological Survey Of Denmark & Greenland	Ellegaard, M (通讯作者)，Univ Copenhagen, Dept Plant & Environm Sci, Frederiksberg 1871, Denmark.	me@plen.ku.dk	Ellegaard, Marianne/H-6748-2014; Ribeiro, Sofia/AAZ-2782-2021; Ribeiro, Sofia/G-9213-2018	Ribeiro, Sofia/0000-0003-0672-9161	VILLUM Foundation, Denmark (VILLUM FONDEN) [VKR023454]	VILLUM Foundation, Denmark (VILLUM FONDEN)	We are grateful to Anna Godhe for helpful comments on an earlier draft, and to Anna Godhe and Nina Lundholm for collaboration on studies on long-term survival of marine diatoms and dinoflagellates. Atchaneey Boonprakob, Nina Lundholm, Ojvind Moestrup, Gertrud Cronberg and Karin Rengefors are thanked for their kind permission to reproduce micrographs in Fig. 3. We thank two anonymous reviewers for their insightful comments. S.R. received financial support from the VILLUM Foundation, Denmark (VILLUM FONDEN) (VKR023454).	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Rev.	FEB	2018	93	1					166	183		10.1111/brv.12338	http://dx.doi.org/10.1111/brv.12338			18	Biology	Science Citation Index Expanded (SCI-EXPANDED)	Life Sciences & Biomedicine - Other Topics	FS7GK	28474820	Green Published, hybrid			2025-03-11	WOS:000419965700009
J	Tian, C; Doblin, MA; Dafforn, KA; Johnston, EL; Pei, HY; Hu, WR				Tian, Chang; Doblin, Martina A.; Dafforn, Katherine A.; Johnston, Emma L.; Pei, Haiyan; Hu, Wenrong			Dinoflagellate cyst abundance is positively correlated to sediment organic carbon in Sydney Harbour and Botany Bay, NSW, Australia	ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH			English	Article						Dinoflagellate life cycle; Sydney Harbour; Risk management; Water quality; Redundancy analysis	HARMFUL ALGAL BLOOMS; NEW-SOUTH-WALES; SHIPS BALLAST WATER; SURFACE SEDIMENTS; SPATIAL-DISTRIBUTION; RESTING CYSTS; GENUS ALEXANDRIUM; EASTERN AUSTRALIA; INDIAN-OCEAN; NEW-ENGLAND	There is growing public concern about the global expansion of harmful algal bloom species (HABs), with dinoflagellate microalgae comprising the major portion of the harmful taxa. These motile, unicellular organisms have a lifecycle involving sexual reproduction and resting cyst formation whereby cysts can germinate from sediments and 'seed' planktonic populations. Thus, investigation of dinoflagellate cyst (dinocyst) distribution in sediments can provide significant insights into HAB dynamics and contribute to indices of habitat quality. Species composition and abundance of dinocysts in relation to sediment characteristics were studied at 18 stations in two densely populated temperate Australian estuaries, Sydney Harbour (Parramatta River/Port Jackson; PS) and Botany Bay (including Georges River; GB). Eighteen dinocyst taxa were identified, dominated by Protoceratium reticulatum and Gonyaulax sp.1 in the PS estuary, together with Archaeperidinium minutum and Gonyaulax sp.1 in the GB estuary. Cysts of Alexandrium catenella, which is one of the causative species of paralytic shellfish poisoning (PSP), were also detected in both estuaries. Out of the measured sediment characteristics (TOC, Cd, Cr, Cu, Fe, Pb, Mn, Ni, Zn and polycyclic aromatic hydrocarbons), TOC was the parameter explaining most of the variation in dinocyst assemblages and was positively correlated to most of the heavy metals. Given the significant relationship between sediment TOC and dinocyst abundance and heavy metal concentrations, this study suggests that sediment TOC could be broadly used in risk management for potential development of algal blooms and sediment contamination in these estuaries.	[Tian, Chang; Doblin, Martina A.] Univ Technol Sydney, Fac Sci, Climate Change Cluster, Sydney, NSW 2007, Australia; [Tian, Chang; Pei, Haiyan; Hu, Wenrong] Shandong Univ, Sch Environm Sci & Engn, Jinan 250061, Shandong, Peoples R China; [Tian, Chang; Dafforn, Katherine A.] Qilu Univ Technol, Sch Environm Sci & Engn, Jinan 250353, Shandong, Peoples R China; [Doblin, Martina A.; Johnston, Emma L.] Sydney Inst Marine Sci, Mosman, NSW 2088, Australia; [Dafforn, Katherine A.; Johnston, Emma L.] Univ New South Wales, Evolut & Ecol Res Ctr, Sch Biol Earth & Environm Sci, Sydney, NSW 2052, Australia; [Pei, Haiyan; Hu, Wenrong] Shandong Prov Engn Ctr Environm Sci & Technol, Jinan 250061, Shandong, Peoples R China	University of Technology Sydney; Shandong University; Qilu University of Technology; Sydney Institute of Marine Science; University of New South Wales Sydney	Doblin, MA (通讯作者)，Univ Technol Sydney, Fac Sci, Climate Change Cluster, Sydney, NSW 2007, Australia.; Pei, HY (通讯作者)，Shandong Univ, Sch Environm Sci & Engn, Jinan 250061, Shandong, Peoples R China.; Doblin, MA (通讯作者)，Sydney Inst Marine Sci, Mosman, NSW 2088, Australia.; Pei, HY (通讯作者)，Shandong Prov Engn Ctr Environm Sci & Technol, Jinan 250061, Shandong, Peoples R China.	martina.doblin@uts.edu.au; haiyanhup@126.com	Johnston, Emma/AAC-2878-2022; Doblin, Martina/E-8719-2013; Johnston, Emma/B-7210-2009; Dafforn, Katherine/J-9647-2013	Doblin, Martina/0000-0001-8750-3433; Johnston, Emma/0000-0002-2117-366X; Dafforn, Katherine/0000-0001-8848-377X	International Science and Technology Cooperation Program of China [2010DFA91150]; Shandong University; Plant Functional Biology and Climate Change Cluster, University of Technology Sydney	International Science and Technology Cooperation Program of China; Shandong University; Plant Functional Biology and Climate Change Cluster, University of Technology Sydney	The authors thank Marlene Zbinden for conducting the sediment organic carbon analyses and Gustaaf Hallegraeff for assistance with cyst identification. This study was supported by International Science and Technology Cooperation Program of China (No 2010DFA91150), a visiting fellowship from Shandong University and by the Plant Functional Biology and Climate Change Cluster, University of Technology Sydney.	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F., 2005, Palaeontologische Zeitschrift, V79, P61	75	10	11	2	35	SPRINGER HEIDELBERG	HEIDELBERG	TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY	0944-1344	1614-7499		ENVIRON SCI POLLUT R	Environ. Sci. Pollut. Res.	FEB	2018	25	6			SI		5808	5821		10.1007/s11356-017-0886-1	http://dx.doi.org/10.1007/s11356-017-0886-1			14	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	FX3KU	29235023				2025-03-11	WOS:000425971700069
J	Lee, S; Hofmeister, R; Hense, I				Lee, Soonmi; Hofmeister, Richard; Hense, Inga			The role of life cycle processes on phytoplankton spring bloom composition: a modelling study applied to the Gulf of Finland	JOURNAL OF MARINE SYSTEMS			English	Article						Baltic Sea; Life cycle; Cold-water dinoflagellates; Diatoms; Resting stages; Seed pool; Spring bloom	DINOFLAGELLATE SCRIPPSIELLA-HANGOEI; BALTIC SEA; STRATEGIES; DYNAMICS; PATTERNS; DINOPHYCEAE; COMMUNITIES; MECHANISMS; ENCYSTMENT; SINKING	Diatoms are typical representatives of the spring bloom worldwide. In several parts of the Baltic Sea, however, cold-water dinoflagellates such as Biecheleria baltica have become dominant during the past decades. We have investigated the mechanisms behind this trend by using an ecosystem model which includes the life cycles of three main phytoplankton groups (diatoms, dinoflagellates and cyanobacteria). Coupled to a water column model we have applied the model system for the period 1981-2010 to the Gulf of Finland. In agreement with observations, the model results show an increasing trend in the proportion of dinoflagellates in the Gulf of Finland. Temperature and life cycle-related processes explain the relative increase of dinoflagellates and corresponding decrease of diatoms. Warming over the 30 years has enabled a head start of dinoflagellates by reducing the time lag between germination and growth of vegetative cells. Although diatoms have a much higher growth rate, they cannot compete with the high dinoflagellate concentrations that result from the inoculum. Diatoms will only dominate in years when the inoculum concentrations of dinoflagellates or the temperatures are low. Overall, the model results suggest that consideration of life cycle dynamics of competing phytoplankton groups may be crucial to understand trends and shifts in community composition.	[Lee, Soonmi; Hofmeister, Richard; Hense, Inga] Univ Hamburg, Ctr Earth Syst Res & Sustainabil, Inst Hydrobiol & Fisheries Sci, Hamburg, Germany; [Lee, Soonmi] CNRS, Ecol Networks & Global Change Grp, Theoret & Expt Ecol Stn, Moulis, France; [Lee, Soonmi] Paul Sabatier Univ, Moulis, France; [Hofmeister, Richard] Helmholtz Zentrum Geesthacht, Inst Coastal Res, Geesthacht, Germany	University of Hamburg; Centre National de la Recherche Scientifique (CNRS); Universite de Toulouse; Universite Toulouse III - Paul Sabatier; Helmholtz Association; Helmholtz-Zentrum Hereon	Lee, S (通讯作者)，Univ Hamburg, Ctr Earth Syst Res & Sustainabil, Inst Hydrobiol & Fisheries Sci, Hamburg, Germany.	soonmi.lee@sete.cnrs.fr		Hense, Inga/0000-0001-7322-680X	Cluster of Excellence "CliSAP", Universitat Hamburg through the German Science Foundation (DFG) [EXC177]	Cluster of Excellence "CliSAP", Universitat Hamburg through the German Science Foundation (DFG)	We thank two anonymous referees for their valuable comments, which helped to improve the manuscript. We are grateful to Riina Klais for making the observational data of diatoms and dinoflagellates available. We also thank ICES for the HELCOM monitoring data (temperature, salinity and nutrients) and ECMWF for the meteorological forcing data. This research was supported through the Cluster of Excellence "CliSAP" (EXC177), Universitat Hamburg, funded through the German Science Foundation (DFG).	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Mar. Syst.	FEB	2018	178						75	85		10.1016/j.jmarsys.2017.10.010	http://dx.doi.org/10.1016/j.jmarsys.2017.10.010			11	Geosciences, Multidisciplinary; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Geology; Marine & Freshwater Biology; Oceanography	FQ2VB					2025-03-11	WOS:000418215000007
J	Kim, SY; Roh, YH; Shin, HH; Huh, S; Kang, SH; Lim, D				Kim, So-Young; Roh, Youn Ho; Shin, Hyeon Ho; Huh, Sik; Kang, Sung-Ho; Lim, Dhongil			Decadal-scale variations of sedimentary dinoflagellate cyst records from the Yellow Sea over the last 400 years	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Eutrophication; Dinoflagellate cyst; Alexandrium bloom; Mud deposits; Yellow Sea	HARMFUL ALGAL BLOOMS; EAST CHINA SEA; COASTAL WATERS; SPATIAL-DISTRIBUTION; METAL CONTAMINATION; SURFACE SEDIMENTS; MARINE-SEDIMENTS; GROWTH-RATES; BALTIC SEA; BOHAI SEA	In recent decades, the Yellow Sea has experienced severe environmental deterioration due to increasing input of anthropogenic pollutants and consequently accelerated eutrophication. Whilst there have been significant advances in documenting historical records of metal pollution in the Yellow Sea region, changes in phytoplankton community structures affected by eutrophication remain understudied. Here, we present a new record of dinoflagellate cyst-based signals in age-dated sediment cores from the Yellow Sea mud deposits to provide better insight into eutrophication history and identification of associated responses of the regional phytoplankton community. It is worthy of note that there were significant variations in abundances and community structures of dinoflagellate cysts in three historical stages in association with increasing anthropogenic activity over the last 400 years. Pervasive effects of human interference altering the Yellow Sea environments are recognized by: 1) an abrupt increase of organic matter, including the diatom-produced biogenic opal concentrations (similar to 1850); 2) a distinct shift in phytoplankton composition towards dinoflagellate dominance (similar to 1940), and 3) recent acceleration of dinoflagellate cyst accumulation (similar to 1990). Particularly in the central Yellow Sea shelf, the anomalously high deposition of dinoflagellate cysts (especially Alexandrium species) is suggested to be a potentially important source of inoculum cells serving as a seed population for localized and recurrent blooms in coastal areas around the Yellow Sea. (C) 2017 Elsevier Ltd. All rights reserved.	[Kim, So-Young; Kang, Sung-Ho] Korea Polar Res Inst, Div Polar Ocean Sci, Incheon 406840, South Korea; [Roh, Youn Ho] Korea Polar Res Inst, Div Polar Paleoenvironm, Incheon 406840, South Korea; [Roh, Youn Ho; Lim, Dhongil] Univ Sci & Technol, Daejeon 34113, South Korea; [Shin, Hyeon Ho; Lim, Dhongil] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Huh, Sik] Korea Inst Ocean Sci & Technol, Dept Geol & Geophys, Ansan, South Korea	Korea Polar Research Institute (KOPRI); Korea Polar Research Institute (KOPRI); University of Science & Technology (UST); Korea Institute of Ocean Science & Technology (KIOST); Korea Institute of Ocean Science & Technology (KIOST)	Lim, D (通讯作者)，Univ Sci & Technol, Daejeon 34113, South Korea.	oceanlim@kiost.ac.kr	Lim, Dhongil/ACH-3964-2022; Kim, So-Young/JFS-7698-2023	Shin, Hyeon Ho/0000-0002-9711-6717; Lim, Dhongil/0000-0002-0832-2907	Ministry of Oceans and Fisheries, Korea [PE99537, PM17040]	Ministry of Oceans and Fisheries, Korea	This study is a contribution to the Korea Institute of Ocean Sciences & Technology research program (grant no. PE99537), and the K-AOOS Program (KOPRI; PM17040) funded by the Ministry of Oceans and Fisheries, Korea. We thank the Library of Marine Samples (LiMS), the Korea Institute of Ocean Sciences & Technology, for supplying the sediment samples for biogenic silicate analysis. The authors are grateful to the editor and three anonymous reviewers for their comments and suggestions that improved the manuscript.	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JAN 5	2018	200						91	98		10.1016/j.ecss.2017.10.006	http://dx.doi.org/10.1016/j.ecss.2017.10.006			8	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	FV1GE					2025-03-11	WOS:000424308600008
S	Roy, S; Montresor, M; Cembella, A		Glibert, PM; Berdalet, E; Burford, MA; Pitcher, GC; Zhou, M		Roy, Suzanne; Montresor, Marina; Cembella, Allan			Key Questions and Recent Research Advances on Harmful Algal Blooms in Fjords and Coastal Embayments	GLOBAL ECOLOGY AND OCEANOGRAPHY OF HARMFUL ALGAL BLOOMS	Ecological Studies-Analysis and Synthesis		English	Article; Book Chapter							DISSOLVED ORGANIC NITROGEN; ALEXANDRIUM-MINUTUM; LIFE-CYCLE; AUREOCOCCUS-ANOPHAGEFFERENS; DINOFLAGELLATE BLOOMS; FUTURE PROJECTIONS; PRYMNESIUM-PARVUM; PHOSPHORUS LOADS; CLIMATE-CHANGE; RESTING CYSTS		[Roy, Suzanne] Univ Quebec Rimouski, Inst Sci Mer, Rimouski, PQ, Canada; [Montresor, Marina] Stn Zool Anton Dohrn, Naples, Italy; [Cembella, Allan] Helmholtz Zentrum Polar & Meeresforsch, Alfred Wegener Inst, Bremerhaven, Germany	University of Quebec; Universite du Quebec a Rimouski; Stazione Zoologica Anton Dohrn; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Roy, S (通讯作者)，Univ Quebec Rimouski, Inst Sci Mer, Rimouski, PQ, Canada.	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Stud.		2018	232						187	203		10.1007/978-3-319-70069-4_10	http://dx.doi.org/10.1007/978-3-319-70069-4_10	10.1007/978-3-319-70069-4		17	Ecology; Oceanography	Book Citation Index– Science (BKCI-S)	Environmental Sciences & Ecology; Oceanography	BL4ET					2025-03-11	WOS:000450291100011
J	Hehenberger, E; James, ER; del Campo, J; Buckland-Nicks, JA; Reimchen, TE; Keeling, PJ				Hehenberger, Elisabeth; James, Erick R.; del Campo, Javier; Buckland-Nicks, John A.; Reimchen, Thomas E.; Keeling, Patrick J.			Fish Parasite Dinoflagellates <i>Haidadinium ichthyophilum</i> and <i>Piscinoodinium</i> Share a Recent Common Ancestor	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						Dinophyceae; endemic stickleback; refugium; SSU rRNA; taxonomy	QUEEN-CHARLOTTE-ISLANDS; MULTIPLE SEQUENCE ALIGNMENT; ENDEMIC STICKLEBACK; HAIDA GWAII; MOLECULAR PHYLOGENY; LIFE-CYCLE; ASSOCIATION; MITOCHONDRIAL; DINOPHYCEAE; MORPHOLOGY	The dinoflagellate Haidadinium ichthyophilum Buckland-Nicks, Reimchen and Garbary 1997 is an ectoparasite of the spine-deficient, three-spine stickleback Gasterosteus aculeatus L. Reimchen 1984, a fish endemic to Rouge Lake, Haida Gwaii. Haidadinium ichthyophilum proved difficult to assign taxonomically because its morphology and complex life cycle exhibited defining characteristics of both autotrophic and heterotrophic dinoflagellates, and was tentatively assigned to the Phytodiniales. Here, we characterized a 492bp fragment of the small subunit ribosomal RNA (SSU rRNA) from preserved H.ichthyophilum cysts. In SSU phylogeny, H.ichthyophilum branches with the fish parasites, Piscinoodinium sp., strongly supporting the inclusion of H.ichthyophilum within the Suessiales.	[Hehenberger, Elisabeth; James, Erick R.; del Campo, Javier; Keeling, Patrick J.] Univ British Columbia, Dept Bot, Canadian Inst Adv Res, 3529-6270 Univ Blvd, Vancouver, BC V6T 1Z4, Canada; [Buckland-Nicks, John A.] St Francis Xavier Univ, Dept Biol, 2320 Notre Dame Ave, Antigonish, NS B2G 2W5, Canada; [Reimchen, Thomas E.] Univ Victoria, Dept Biol, POB 3020, Victoria, BC V8W 3N5, Canada	University of British Columbia; Canadian Institute for Advanced Research (CIFAR); Saint Francis Xavier University - Canada; University of Victoria	Hehenberger, E (通讯作者)，Univ British Columbia, Dept Bot, 3529-6270 Univ Blvd, Vancouver, BC V6T 1Z4, Canada.	helisabe@mail.ubc.ca	James, Erick/D-4725-2012; Hehenberger, Elisabeth/AAG-3123-2021; del Campo, Javier/B-5233-2008	Keeling, Patrick/0000-0002-7644-0745; del Campo, Javier/0000-0002-5292-1421; Hehenberger, Elisabeth/0000-0001-7810-1336	NSERC [227301, 46205, 2354]; Tula Foundation; Marie Curie International Outgoing Fellowship grant [FP7-PEOPLE-2012-IOF - 331450 CAARL]	NSERC(Natural Sciences and Engineering Research Council of Canada (NSERC)); Tula Foundation; Marie Curie International Outgoing Fellowship grant(European Union (EU))	We are grateful to Dr. Rob Fensome and Dr. Juan Saldarriaga for connecting our laboratories. This work was supported by NSERC Discovery grants to PJK (#227301), JB-N (#46205) and TER (#2354). EH and JdC were supported by a grant to the Centre for Microbial Diversity and Evolution from the Tula Foundation. JdC was supported by Marie Curie International Outgoing Fellowship grant (FP7-PEOPLE-2012-IOF - 331450 CAARL). PJK is a Senior Fellow of the Canadian Institute for Advanced Research.	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Eukaryot. Microbiol.	JAN-FEB	2018	65	1					127	131		10.1111/jeu.12430	http://dx.doi.org/10.1111/jeu.12430			5	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	FS6ZC	28544317				2025-03-11	WOS:000419945900012
J	Wang, ZH; Liang, WB; Guo, X; Liu, L				Wang, Zhaohui; Liang, Weibiao; Guo, Xin; Liu, Lei			Inactivation of <i>Scrippsiella</i> <i>trochoidea</i> cysts by different physical and chemical methods: Application to the treatment of ballast water	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate cysts; Germination; Ballast water treatment; Heating; Ultraviolet; Ultrasound	SHIPS BALLAST; HYDROGEN-PEROXIDE; MARINE ORGANISMS; GLOBAL TRANSPORT; TREATMENT SYSTEM; ARTEMIA-SALINA; PHYTOPLANKTON; RISK; ZOOPLANKTON; SONICATION	Effects of heating, ultraviolet (UV), ultrasound (US), hydrogen peroxide (H2O2) and freshwater, and the combined treatments on inactivation of cysts of Scrippsiella trochoidea and cysts in sediment suspension were studied. Heating was the most efficient way to inactivate cyst germination, and cysts were completely inactivated at 38 degrees C for 5 h. UV, US, and freshwater efficiently inhibited but could not completely inactivate cyst germination. Effects of heating, UV, and US on cyst germination decreased for cysts in sediment, and germination rates increased by 6.7-48% compared to the same treatment for cysts without sediment. H2O2 significantly inhibited cyst germination, but complete inactivation occurred at high concentration for long duration (100 mg/L, 6d). The combined treatments were more effective, especially the combinations of heating and UV. The results suggested that heating might be a feasible way for ballast water treatment especially after combined with filtration and UV.	[Wang, Zhaohui; Liang, Weibiao; Guo, Xin; Liu, Lei] Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Guangdong, Peoples R China	Jinan University	Wang, ZH (通讯作者)，Jinan Univ, Inst Hydrobiol, Guangzhou 510632, Guangdong, Peoples R China.	twzh@jnu.edu.cn			National Natural Foundation of China [131301235, 41476132]	National Natural Foundation of China(National Natural Science Foundation of China (NSFC))	This work was supported by the National Natural Foundation of China (Nos. 131301235, 41476132).	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Pollut. Bull.	JAN	2018	126						150	158		10.1016/j.marpolbul.2017.11.002	http://dx.doi.org/10.1016/j.marpolbul.2017.11.002			9	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	FW8GQ	29421082				2025-03-11	WOS:000425569400018
C	Supono; Bolch, C; Knowles, G		Arisuryanti, T; Maryani; Rohmah, Z; Hidayati, L; Aristya, GR		Supono; Bolch, Christopher; Knowles, Graeme			Pathological Alteration of Digestive Tissues in Blue Mussel (<i>Mytillus galloprovincialis</i>) Larvae Induced by <i>Alexandrium fundyense</i> Lysates	INVENTING PROSPEROUS FUTURE THROUGH BIOLOGICAL RESEARCH AND TROPICAL BIODIVERSITY MANAGEMENT	AIP Conference Proceedings		English	Proceedings Paper	5th International Conference on Biological Science (ICBS)	SEP 15-16, 2017	Univ Gadjah Mada, Fac Biol, Yogyakarta, INDONESIA	Univ Tun Hussein Onn Malaysia	Univ Gadjah Mada, Fac Biol	Alexandrium fundyense; blue mussel larvae; HAB; lysate; pathology	TOXIC DINOFLAGELLATE; HETEROCAPSA-CIRCULARISQUAMA; TAMARENSE; SCALLOP; CATENELLA; CULTURES; GROWTH; CYSTS	Bloom of toxic dinoflagellate, Alexandrium fundyense has inflicted significant economic loss of both wild fisheries and aquaculture farming. This toxic dinoflagellate is capable of producing extracellular (exudates) and intracellular toxic compound (lysates), causing mass mortality of shellfish in hatchery operation. Despite its significant impacts, there is lack of study to understand the toxicity mechanism and cellular effect of A. fundyense lysates on shellfish larvae. This study aimed to investigate pathological changes of digestive tissues in blue mussel (Mytilus galloprovincialis) larvae exposed to A. fundyense lysates. Blue mussel larvae were exposed to A. fundyense lysates at a bloom concentration of 1 500 cells ml(-1) and sampled for histological assessment at every 0 h, 3 h, 15 h, 24 h, and 48 h after exposure. This study found that pathological changes in digestive tissues occurred as early as 3 h after exposure. Pathological changes included cell vacuolation, necrosis, and cilial exfoliation of style sac. Of these changes, only the prevalence and intensity of cell necrosis increases with increasing exposure duration (from low at 3 h to 15 h to intermediate at 24 h to 48 h). The finding of this study suggests that early detection and appropriate mitigation of A. fundyense bloom is needed to minimize its impact on shellfish hatchery.	[Supono] Indonesian Inst Sci, Res Ctr Oceanog, LKBL Bitung LIPI, Sulawesi Utara, Indonesia; [Bolch, Christopher] Univ Tasmania, Inst Marine & Antarctic Studies, Launceston, Tas, Australia; [Knowles, Graeme] Dept Primary Ind Pk Waters & Environm, Anim Hlth Lab, Launceston, Tas, Australia	National Research & Innovation Agency of Indonesia (BRIN); Indonesian Institute of Sciences (LIPI); University of Tasmania	Supono (通讯作者)，Indonesian Inst Sci, Res Ctr Oceanog, LKBL Bitung LIPI, Sulawesi Utara, Indonesia.	supono@lipi.go.id	Bolch, Christopher/J-7619-2014; Knowles, Graeme/HNQ-4536-2023; Supono, Supono/JOJ-7375-2023	Supono, Supono/0000-0002-2747-3049	Australia Awards Scholarship; LKBL Bitung-LIPI	Australia Awards Scholarship; LKBL Bitung-LIPI	We would like to thank Australia Awards Scholarship for research funding support, LKBL Bitung-LIPI for travel fund support for the conference, spring bay seafood for providing larvae, and Institute for Marine and Antarctic Studies (IMAS) for providing space and equipment set up during the experiment.	Anderson D. 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M., 1926, JOUR MARINE BIOL ASSOC, V14, P295; YONGE CM, 1949, PHILOS T R SOC B, V234, P29, DOI 10.1098/rstb.1949.0006	34	0	0	0	9	AMER INST PHYSICS	MELVILLE	2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA	0094-243X		978-0-7354-1718-2	AIP CONF PROC			2018	2002								020061	10.1063/1.5050157	http://dx.doi.org/10.1063/1.5050157			7	Biology; Physics, Applied	Conference Proceedings Citation Index - Science (CPCI-S)	Life Sciences & Biomedicine - Other Topics; Physics	BL1LT		Bronze			2025-03-11	WOS:000447843600061
J	Luo, ZH; Lim, ZF; Mertens, KN; Gurdebeke, P; Bogus, K; Carbonell-Moore, MC; Vrielinck, H; Leaw, CP; Lim, PT; Chomérat, N; Li, XT; Gu, HF				Luo, Zhaohe; Lim, Zhen Fei; Mertens, Kenneth Neil; Gurdebeke, Pieter; Bogus, Kara; Carbonell-Moore, M. Consuelo; Vrielinck, Henk; Leaw, Chui Pin; Lim, Po Teen; Chomerat, Nicolas; Li, Xintian; Gu, Haifeng			Morpho-molecular diversity and phylogeny of <i>Bysmatrum</i> (Dinophyceae) from the South China Sea and France	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						benthic dinoflagellate; biogeography; Bysmatrum granulosum; Bysmatrum gregarium; Bysmatrum subsalsum; eyespot; molecular phylogeny	TIDAL POOL DINOFLAGELLATE; SP. NOV. DINOPHYCEAE; RDNA-BASED PHYLOGENY; GULF-OF-MEXICO; ALEXANDRIUM DINOPHYCEAE; BENTHIC DINOFLAGELLATE; SUBSALSUM DINOPHYCEAE; PERIDINIUM-GREGARIUM; ELECTRON-MICROSCOPY; SEQUENCE DATA	The dinoflagellate genus Bysmatrum encompasses five epibenthic or tide-pool species and has been characterized by separated anterior intercalary plates. In the present study, we obtained six strains of Bysmatrum from the South China Sea and French Atlantic coast by isolating single cells/cysts from plankton and sediment samples. All strains were examined with light microscopy and scanning electron microscopy. Based on morphological observations, three strains were identified as Bysmatrum subsalsum, characterized by the elongated and rectangular first and a hexagonal second anterior intercalary plate. They differ from each other in the number of sulcal lists and the configuration of the first anterior intercalary plate. One strain was identified as Bysmatrum gregarium and the other two as Bysmatrum granulosum. The cyst-theca relationship of B. subsalsum from the French Atlantic was established by incubation of the cyst, and the geochemical composition of the cyst wall was measured through micro-Fourier transform infrared spectroscopy. Bysmatrum subsalsum from Malaysia shows a bright red stigma in the sulcal area under light microscopy, which was confirmed with transmission electron microscopy: it was identified as a type B eyespot. Small subunit ribosomal DNA (SSU rDNA), partial large subunit ribosomal DNA (LSU rDNA) and internal transcribed spacer (ITS) sequences were obtained from all six strains. The maximum likelihood and Bayesian inference analysis based on concatenated SSU, ITS and LSU sequences revealed that Bysmatrum is monophyletic and nested within Peridiniales. Our strains of B. subsalsum form a new ribotype in the molecular phylogeny (designated as ribotype B). The genetic distance based on ITS sequences among Bysmatrum species ranged from 0.34 to 0.47 and those genetic distances at the intraspecific level of B. subsalsum could reach 0.41, supporting the possibility ofhidden crypticity within B. subsalsum.	[Luo, Zhaohe; Li, Xintian; Gu, Haifeng] SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Lim, Zhen Fei; Leaw, Chui Pin; Lim, Po Teen] Univ Malaya, Inst Ocean & Earth Sci, Bachok 16310, Kelantan, Malaysia; [Mertens, Kenneth Neil; Chomerat, Nicolas] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Gurdebeke, Pieter] Univ Ghent, Dept Geol, Res Unit Palaeontol, Krijgslaan 281,S8, B-9000 Ghent, Belgium; [Bogus, Kara] Texas A&M Univ, Int Ocean Discovery Program, College Stn, TX 77845 USA; [Carbonell-Moore, M. Consuelo] Oregon State Univ, Coll Agr Sci, Dept Bot & Plant Pathol, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Vrielinck, Henk] Univ Ghent, Dept Solid State Sci, Krijgslaan 281,S1, B-9000 Ghent, Belgium	Third Institute of Oceanography, Ministry of Natural Resources; Universiti Malaya; Ifremer; Ghent University; Texas A&M University System; Texas A&M University College Station; Oregon State University; Ghent University	Gu, HF (通讯作者)，SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China.; Mertens, KN (通讯作者)，IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France.	kenneth.mertens@ifremer.fr; guhaifeng@tio.org.cn	Luo, Zhaohe/ITT-7163-2023; Vrielinck, Henk/M-8367-2016; Mertens, Kenneth/AAO-9566-2020; Li, Xintian/HGA-0346-2022; Leaw, Chui Pin/F-5220-2012; Gurdebeke, Pieter/AAY-7059-2020; Lim, Po Teen/C-9758-2013; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Lim, Po Teen/0000-0003-2823-0564; Luo, Zhaohe/0000-0001-8662-2414; Vrielinck, Henk/0000-0003-4861-9630; Gurdebeke, Pieter R./0000-0003-1425-8515; Gu, Haifeng/0000-0002-2350-9171; Mertens, Kenneth/0000-0003-2005-9483; Chomerat, Nicolas/0000-0001-9691-6344; Bogus, Kara/0000-0003-4690-0576	National Key Research and Development Program of China [2016YFE0202100]; National Natural Science Foundation of China [41676117]; National Science Foundation [OCE - 1326927]; China-ASEAN Maritime Cooperation Fund	National Key Research and Development Program of China(National Key Research & Development Program of China); National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); National Science Foundation(National Science Foundation (NSF)); China-ASEAN Maritime Cooperation Fund	This work was supported by the National Key Research and Development Program of China (2016YFE0202100), National Natural Science Foundation of China (41676117) and China-ASEAN Maritime Cooperation Fund. 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J. Phycol.		2018	53	3					318	335		10.1080/09670262.2018.1449014	http://dx.doi.org/10.1080/09670262.2018.1449014			18	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	GQ7TI		Green Published			2025-03-11	WOS:000441948900007
J	Moestrup, O; Nicholls, KH; Daugbjerg, N				Moestrup, Ojvind; Nicholls, Kenneth H.; Daugbjerg, Niels			Studies on woloszynskioid dinoflagellates IX: ultrastructure, cyst formation and phylogeny of the "red-snow' alga <i>Borghiella pascheri</i> (Suchlandt) Moestrup (= <i>Glenodinium pascheri, Woloszynskia pascheri, Gyrodinium nivalis</i>)	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						Borghiella pascheri; "red snow' dinoflagellates; phylogeny; taxonomy; ultrastructure	FRESH-WATER DINOFLAGELLATE; LSU RDNA; SP NOV.; ELECTRON-MICROSCOPY; LAKE TOVEL; GEN.; DINOPHYCEAE; LIGHT; SANGUINEA	Red snow caused by dinoflagellates is a phenomenon rarely reported, described from the European Alps from 1914 onwards, and subsequently observed outside Europe on several occasions in Ontario, Canada. Considerable taxonomic confusion exists regarding the identity of the organism(s) causing red snow, but the most recent occurrence in 2016 in Ontario has now allowed detailed studies, including LM, SEM, TEM and molecular sequencing of the causative species. We conclude that the two species originally described as the cause of red snow, Glenodinium pascheri and Gyrodinium nivale, are synonymous and that the appropriate name for the organism is Borghiella pascheri (syn. Woloszynskia pascheri) as suggested by Moestrup & Calado in the recent volume of the Susswasserflora. The central part of Borghiella pascheri cells is tomato red and filled with numerous organelles, whose ultrastructure indicates modified chloroplasts. Lack of cultures has prevented chemical characterization of the red pigment. Formation of temporary cysts was common in the samples. Transformation of the motile cells into temporary cysts was followed in detail, and the cysts were shown to be surrounded by the fused inner membranes of the amphiesmal vesicles, which became the cell membrane of the cysts, covered by the fused pellicle precursors. The cell membrane from the motile cell was discarded together with the outer amphiesmal vesicle membrane and the thin thecal plates, and the temporary cysts were therefore not surrounded by any pattern of vesicles. Sexual reproduction resulted in the formation of hypnozygotes. Although the species possessed several unusual features, DNA sequencing showed it to belong to Borghiella. The culture established in 1965 from the Botanical Garden in Gottingen, Germany and generally identified as Woloszynskia pascheri belongs to a separate species of Borghiella, to be described separately.The occurrence of red snow caused by dinoflagellates is discussed.	[Moestrup, Ojvind; Daugbjerg, Niels] Univ Copenhagen, Dept Biol, Univ Pk 4, DK-2100 Copenhagen O, Denmark; [Nicholls, Kenneth H.] S 15 Concess 1, RR 1, Sunderland, ON LOC 1HO, Canada	University of Copenhagen	Moestrup, O (通讯作者)，Univ Copenhagen, Dept Biol, Univ Pk 4, DK-2100 Copenhagen O, Denmark.	moestrup@bio.ku.dk	Daugbjerg, Niels/D-3521-2014	Daugbjerg, Niels/0000-0002-0397-3073	Villum-Kann Rasmussen Foundation; Carlsberg Foundation [2012_01_0509]; Brodrene Hartmann [A22920]	Villum-Kann Rasmussen Foundation; Carlsberg Foundation(Carlsberg Foundation); Brodrene Hartmann	This work was supported by the Villum-Kann Rasmussen Foundation [Number no longer available]; Carlsberg Foundation [2012_01_0509]; Brodrene Hartmann [A22920];	Boutrup PV, 2016, PHYCOLOGIA, V55, P147, DOI 10.2216/15-138.1; Craveiro SC, 2013, PHYCOLOGIA, V52, P488, DOI 10.2216/13-152.1; Daugbjerg N, 2014, EUR J PHYCOL, V49, P436, DOI 10.1080/09670262.2014.969781; DODGE J D, 1970, Botanical Journal of the Linnean Society, V63, P53, DOI 10.1111/j.1095-8339.1970.tb02302.x; Doyle JJ., 1987, PHYTOCHEM B BOT SOC, V19, P11, DOI DOI 10.1016/0031-9422(80)85004-7; Flaim G, 2004, PHYCOLOGIA, V43, P737, DOI 10.2216/i0031-8884-43-6-737.1; Frassanito R, 2006, BIOCHEM SYST ECOL, V34, P843, DOI 10.1016/j.bse.2006.05.013; GERRATH JF, 1974, CAN J BOT, V52, P683, DOI 10.1139/b74-086; Gunning B.E.S., 1975, PLANT CELL BIOL ULTR; Hansen G, 2003, HARMFUL ALGAE, V2, P317, DOI 10.1016/S1568-9883(03)00060-X; Hansen G, 2018, PROTIST, V169, P280, DOI 10.1016/j.protis.2018.02.003; Hansen G, 2011, PHYCOLOGIA, V50, P583, DOI 10.2216/11-11.1; Kusel-Fetzmann E., 1979, Monographiae Biologicae, V37, P171; Lindberg K, 2005, PHYCOLOGIA, V44, P416, DOI 10.2216/0031-8884(2005)44[416:SOWDIW]2.0.CO;2; LINDEMANN E., 1928, ARCH PROTISTENK, V63, P259; Lindemann E., 1929, Archiv fuer Protistenkunde Jena, V68, P1; Loeblich A.R. 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J	Díaz, PA; Molinet, C; Seguel, M; Díaz, M; Labra, G; Figueroa, RI				Diaz, Patricio A.; Molinet, Carlos; Seguel, Miriam; Diaz, Manuel; Labra, Gissela; Figueroa, Rosa I.			Species diversity and abundance of dinoflagellate resting cysts seven months after a bloom of <i>Alexandrium catenella</i> in two contrasting coastal systems of the Chilean Inland Sea	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						Alexandrium catenella; dinoflagellate cysts; Chilean Inland Sea; cyst beds; oceanic and estuarine systems; Protoceratium reticulatum	SOUTHERN CHILE; KOFOID BALECH; MICROSATELLITE MARKERS; SPATIAL-DISTRIBUTION; COMPLEX DINOPHYCEAE; GENETIC DIVERSITY; SEDIMENTS; GERMINATION; TAMARENSE; DYNAMICS	In Chile, 90% of the fish farms and major natural shellfish beds are located in the region surrounding the Inland Sea, where over the last few decades harmful phytoplankton blooms have often been observed. The onset and recurrence of bloom events are often related to the resuspension and germination of resting cysts that have accumulated in the sediments. The degree of cyst settling, accumulation and germination is highly variable between areas and depends on physical and environmental factors. To learn how differences in oceanographic exposure, amount of river runoff and bathymetry affect dinoflagellate cyst deposition, we examined the diversity and abundance of dinoflagellate resting cysts from two hydrographically contrasting coastal areas (oceanic Guaitecas Archipelago and estuarine Pitipalena Fjord) of the Chilean Inland Sea in September 2006, seven months after a bloom of Alexandrium catenella, a producer of paralytic shellfish toxin. Cyst species diversity consisted of 18 taxa, including A. catenella and the noxious species Protoceratium reticulatum, both of which have caused blooms in the study area. Our results revealed significant differences between the two study sites in terms of the abundance and diversity of resting cysts, suggesting that in the specific case of A. catenella, only Guaitecas stations have potential for cyst accumulation and successful growth of cells. However, there was no evidence of long-term resting cyst beds of A. catenella at either study site.	[Diaz, Patricio A.] Univ Los Lagos, Ctr I Mar, Puerto Montt 557, Chile; [Diaz, Patricio A.; Molinet, Carlos; Diaz, Manuel] Univ Austral Chile, Programa Invest Pesquera, POB 1327,Los Pinos S-N, Balneario Pelluco, Puerto Montt, Chile; [Diaz, Patricio A.; Molinet, Carlos; Diaz, Manuel] Univ Austral Chile, Inst Acuicultura, POB 1327,Los Pinos S-N, Balneario Pelluco, Puerto Montt, Chile; [Seguel, Miriam; Labra, Gissela] Univ Austral Chile, Ctr Reg Anal Recursos & Medio Ambiente CERAM, Los Pinos S-N, Balneario Pelluco, Puerto Montt, Chile; [Labra, Gissela] Inst Fomento Pesquero IFOP, Balmaceda 252, Puerto Montt, Chile; [Figueroa, Rosa I.] Ctr Oceanog Vigo, IEO, Subida Radio Faro 50, Vigo 36390, Spain; [Figueroa, Rosa I.] Lund Univ, Dept Biol, Aquat Ecol, S-22362 Lund, Sweden	Universidad de Los Lagos; Universidad Austral de Chile; Universidad Austral de Chile; Universidad Austral de Chile; Instituto de Fomento Pesquero (Valparaiso); Spanish Institute of Oceanography; Lund University	Díaz, PA (通讯作者)，Univ Los Lagos, Ctr I Mar, Puerto Montt 557, Chile.; Díaz, PA (通讯作者)，Univ Austral Chile, Programa Invest Pesquera, POB 1327,Los Pinos S-N, Balneario Pelluco, Puerto Montt, Chile.; Díaz, PA (通讯作者)，Univ Austral Chile, Inst Acuicultura, POB 1327,Los Pinos S-N, Balneario Pelluco, Puerto Montt, Chile.	patricio.diaz@ulagos.cl	Menendez Gonzalez, Manuel/GSJ-2393-2022; Diaz, Patricio/B-8128-2018; Figueroa, Rosa/M-7598-2015	Diaz, Patricio/0000-0002-9403-8151; Figueroa, Rosa/0000-0001-9944-7993	Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2016) [79160065]; FORMAS (Sweden)	Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2016); FORMAS (Sweden)(Swedish Research Council Formas)	Patricio A. Diaz is funded by the Chilean National Commission for Scientific and Technological Research (CONICYT + PAI/CONCURSO NACIONAL INSERCION EN LA ACADEMIA CONVOCATORIA 2016, 79160065). Rosa I. Figueroa is funded by FORMAS (Sweden).	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J	Uzar, S; Aydin, H; Yurur, EE				Uzar, Serdar; Aydin, Hilal; Yurur, Emine Erdem			DINOFLAGELLATE CYST STUDIES IN THE SEDIMENTS OF TURKISH COASTAL WATERS AND FUTURE ASPECTS	FRESENIUS ENVIRONMENTAL BULLETIN			English	Article						Ecology; phytoplankton; dinoflagellate; resting cyst; sediment; biodiversity; indicator	RECENT MARINE-SEDIMENTS; HARMFUL ALGAL BLOOMS; BLACK-SEA CORRIDOR; SURFACE SEDIMENTS; IZMIR BAY; AEGEAN SEA; GONYAULAX-POLYEDRA; SP-NOV; ASSEMBLAGES; MARMARA	Marine organisms provide a valuable source of knowledge regarding how the marine ecosystem works. Studies of phytoplankton ecology and their dynamics offer a great opportunity for understanding these ecosystems. Dinoflagellates are a major part of marine phytoplankton and some dinoflagellates are able to produce resting cysts, which are composed of organic polymers that are highly resistant. These cysts are usually preserved very well in marine sediments. The number of studies on dinoflagellate cysts in the world's oceans is gradually increasing and these studies have become more detailed and multidisciplinary. Studies on dinoflagellate cysts in sediments have undergone a very important development in recent years, both in Turkish coastal waters as well as in the world's oceans. Here, we review the aims of the existing dinoflagellate cysts studies and summarise their results. We also give different future perspectives so as to contribute to the dinoflagellate cysts studies from Turkish coastal waters.	[Uzar, Serdar; Aydin, Hilal; Yurur, Emine Erdem] Manisa Celal Bayar Univ, Biol Dept, Fac Sci & Arts, Campus Martyr Prof Dr Ilhan Varank, TR-45140 Manisa, Turkey	Celal Bayar University	Uzar, S (通讯作者)，Manisa Celal Bayar Univ, Biol Dept, Fac Sci & Arts, Campus Martyr Prof Dr Ilhan Varank, TR-45140 Manisa, Turkey.	uzarserdar@yahoo.com.tr	Uzar, Serdar/G-9956-2014					Aydin H., 2013, Journal of Fisheries and Aquatic Sciences (Su Urunleri Dergisi), V30, P109, DOI 10.12714/egejfas.2013.30.3.04; Aydin H, 2015, TURK J FISH AQUAT SC, V15, P543, DOI 10.4194/1303-2712-v15_2_42; Aydin H, 2015, FRESEN ENVIRON BULL, V24, P4789; Aydin H, 2015, MAR POLLUT BULL, V94, P144, DOI 10.1016/j.marpolbul.2015.02.038; Aydin H, 2014, FRESEN ENVIRON BULL, V23, P1795; Aydin H, 2014, J ENVIRON BIOL, V35, P413; Aydin H, 2011, MAR MICROPALEONTOL, V80, P44, DOI 10.1016/j.marmicro.2011.03.004; Balkis N, 2016, PHYCOLOGIA, V55, P187, DOI 10.2216/15-93.1; Bringué M, 2013, MAR MICROPALEONTOL, V100, P34, DOI 10.1016/j.marmicro.2013.03.007; Cho HJ, 2001, MAR MICROPALEONTOL, V42, P103, DOI 10.1016/S0377-8398(01)00016-0; DALE B, 1978, OCEANUS, V21, P41; Dale B, 1999, ESTUAR COAST SHELF S, V48, P371, DOI 10.1006/ecss.1999.0427; Dale B, 2009, J SEA RES, V61, P103, DOI 10.1016/j.seares.2008.06.007; Fujii R, 2006, J PLANKTON RES, V28, P131, DOI 10.1093/plankt/fbi106; Giannakourou A, 2005, CONT SHELF RES, V25, P2585, DOI 10.1016/j.csr.2005.08.003; Harland R, 2004, REV PALAEOBOT PALYNO, V128, P107, DOI 10.1016/S0034-6667(03)00115-5; Head M.J., 1996, Palynology: Principles and Applications, P1197; Joyce LB, 2005, HARMFUL ALGAE, V4, P309, DOI 10.1016/j.hal.2004.08.001; Koray T., 2004, HARMFUL ALGAE, P335; Lacasse O, 2013, MAR POLLUT BULL, V66, P230, DOI 10.1016/j.marpolbul.2012.10.016; Limoges A, 2015, J PHYCOL, V51, P211, DOI 10.1111/jpy.12257; Liu DY, 2013, MAR ECOL PROG SER, V475, P1, DOI 10.3354/meps10234; Liu DY, 2012, MAR MICROPALEONTOL, V84-85, P1, DOI 10.1016/j.marmicro.2011.11.001; Londeix L, 2009, REV PALAEOBOT PALYNO, V158, P52, DOI 10.1016/j.revpalbo.2009.07.004; Luo ZH, 2016, EUR J PHYCOL, V51, P188, DOI 10.1080/09670262.2015.1120348; Marret F, 2009, QUATERN INT, V197, P72, DOI 10.1016/j.quaint.2007.01.010; McCarthy FMG, 2011, REV PALAEOBOT PALYNO, V166, P46, DOI 10.1016/j.revpalbo.2011.04.008; Mertens KN, 2014, GEOLOGY, V42, P531, DOI 10.1130/G35456.1; Mertens KN, 2015, J PHYCOL, V51, P560, DOI 10.1111/jpy.12304; Mertens KN, 2012, QUATERNARY SCI REV, V39, P45, DOI 10.1016/j.quascirev.2012.01.026; Montresor M, 1998, J PLANKTON RES, V20, P2291, DOI 10.1093/plankt/20.12.2291; Mudie PJ, 2007, QUATERN INT, V167, P73, DOI 10.1016/j.quaint.2006.11.009; Mudie PJ, 2010, VEG HIST ARCHAEOBOT, V19, P531, DOI 10.1007/s00334-010-0268-9; Mudie PJ, 2004, REV PALAEOBOT PALYNO, V128, P143, DOI 10.1016/S0034-6667(03)00117-9; Mudie PJ, 2002, MAR GEOL, V190, P203, DOI 10.1016/S0025-3227(02)00348-1; Mudie PJ, 2001, MAR MICROPALEONTOL, V43, P155, DOI 10.1016/S0377-8398(01)00006-8; Okamoto OK, 1999, COMP BIOCHEM PHYS C, V123, P75, DOI 10.1016/S0742-8413(99)00013-4; Okamoto OK, 1998, COMP BIOCHEM PHYS C, V119, P67, DOI 10.1016/S0742-8413(97)00192-8; Pospelova V, 2005, MAR ECOL PROG SER, V292, P23, DOI 10.3354/meps292023; Pospelova V, 2006, PALEOCEANOGRAPHY, V21, DOI 10.1029/2005PA001251; Ribeiro S, 2008, MAR MICROPALEONTOL, V68, P156, DOI 10.1016/j.marmicro.2008.01.013; Rochon A, 2009, REV PALAEOBOT PALYNO, V155, P52, DOI 10.1016/j.revpalbo.2008.12.017; Ryan WBF, 2003, ANNU REV EARTH PL SC, V31, P525, DOI 10.1146/annurev.earth.31.100901.141249; Ryan WBF, 1997, MAR GEOL, V138, P119, DOI 10.1016/S0025-3227(97)00007-8; Ryan William., 1998, Noah's Flood: The New Scientific Discoveries About the Event that Changed History; Smayda TJ, 2003, J SEA RES, V49, P95, DOI 10.1016/S1385-1101(02)00219-8; Tardio M, 2006, J PALEOLIMNOL, V36, P315, DOI 10.1007/s10933-006-9001-1; Uzar S, 2010, SCI RES ESSAYS, V5, P285; Zonneveld KAF, 2012, MAR POLLUT BULL, V64, P114, DOI 10.1016/j.marpolbul.2011.10.012; Zonneveld KAF, 2009, J SEA RES, V62, P189, DOI 10.1016/j.seares.2009.02.003	50	2	2	0	6	PARLAR SCIENTIFIC PUBLICATIONS (P S P)	FREISING	ANGERSTR. 12, 85354 FREISING, GERMANY	1018-4619	1610-2304		FRESEN ENVIRON BULL	Fresenius Environ. Bull.		2018	27	5					2800	2808						9	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	GK8ZA					2025-03-11	WOS:000436522600023
J	Raho, N; Fraga, S; Abad, JP; Marín, I				Raho, Nicolas; Fraga, Santiago; Abad, Jose P.; Marin, Irma			<i>Biecheleria tirezensis</i> sp nov (Dinophyceae, Suessiales), a new halotolerant dinoflagellate species isolated from the athalassohaline Tirez natural pond in Spain	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						Athalassic; CBC; dinoflagellate; halotolerant; hypersaline; ITS2 secondary structure; phylogeny; Suessiaceae; taxonomy; Woloszynskioid	INTERNAL TRANSCRIBED SPACER; RIBOSOMAL-RNA; LAKE TOVEL; PHYLOGENETIC POSITION; WOLOSZYNSKIA-CINCTA; ELECTRON-MICROSCOPY; MOLECULAR ANALYSIS; COASTAL WATERS; COMB. NOV; GEN.	A new euryhaline and eurythermal dinoflagellate species, Biecheleria tirezensis sp. nov., is described based on samples taken from an extreme environment, the athalassohaline and particularly sulphate-rich Tirez natural pond (Spain). This species is able to survive in salinities from almost fresh water up to 56 and over a 5-25 degrees C temperature range. Thus, the ecological characteristics of this isolate differentiate it from other species of the same genus. Its morphology, as examined by light, scanning and transmission electron microscopy, shows that the cells are almost spherical, with several series of amphiesmal vesicles. It also has a single elongate amphiesmal vesicle (EAV) observed by SEM and the eyespot has a type E structure, typical of Biecheleria. Spherical and smooth cysts were observed in old cultures. The pigment composition is typical of a peridinin-containing dinoflagellate. Phylogeny inferred from nuclear rDNA SSU, ITS and LSU sequences showed the isolate belongs to the genus Biecheleria, closest to B. cincta and B. brevisulcata. Modelling and analysis of the secondary structure of its ITS2 region, and that of other species of the same genus and some representatives of the most closely related genera, indicated that the isolate represents a new species clearly separated from but related to B. cincta. The criterion of the presence of Compensatory Base Changes (CBCs) in the secondary structure of the ITS2 region as an indicator of species differentiation confirmed this, supporting the establishment of the Tirez pond isolate as a new species of Biecheleria.	[Raho, Nicolas; Abad, Jose P.; Marin, Irma] Univ Autonoma Madrid, Dept Biol Mol, E-28049 Madrid, Spain; [Fraga, Santiago] IEO, Ctr Oceanog Vigo, Vigo 36390, Spain; [Raho, Nicolas] MIT, Dept Civil & Environm Engn, 77 Massachusetts Ave, Cambridge, MA 02139 USA	Autonomous University of Madrid; Spanish Institute of Oceanography; Massachusetts Institute of Technology (MIT)	Abad, JP; Marín, I (通讯作者)，Univ Autonoma Madrid, Dept Biol Mol, E-28049 Madrid, Spain.	josep.abad@uam.es	Marin, Irma/Z-4231-2019; Lorenzo, Jose/Y-3871-2019; Fraga, Santiago/AAA-3760-2020	Abad Lorenzo, Jose Pascual/0000-0002-5284-5772	Universidad Autonoma de Madrid	Universidad Autonoma de Madrid	N. 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J. Phycol.		2018	53	1					99	113		10.1080/09670262.2017.1386328	http://dx.doi.org/10.1080/09670262.2017.1386328			15	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	FV7FW					2025-03-11	WOS:000424749900009
J	Mertens, KN; Carbonell-Moore, MC; Pospelova, V; Head, MJ; Highfield, A; Schroeder, D; Gu, HF; Andree, KB; Fernandez, M; Yamaguchi, A; Takano, Y; Matsuoka, K; Nézan, E; Bilien, G; Okolodkov, Y; Koike, K; Hoppenrath, M; Pfaff, M; Pitcher, G; Al-Muftah, A; Rochon, A; Lim, PT; Leaw, CP; Lim, ZF; Ellegaard, M				Mertens, Kenneth Neil; Carbonell-Moore, M. Consuelo; Pospelova, Vera; Head, Martin J.; Highfield, Andrea; Schroeder, Declan; Gu, Haifeng; Andree, Karl B.; Fernandez, Margarita; Yamaguchi, Aika; Takano, Yoshihito; Matsuoka, Kazumi; Nezan, Elisabeth; Bilien, Gwenael; Okolodkov, Yuri; Koike, Kazuhiko; Hoppenrath, Mona; Pfaff, Maya; Pitcher, Grant; Al-Muftah, Abdulrahman; Rochon, Andre; Lim, Po Teen; Leaw, Chui Pin; Lim, Zhen Fei; Ellegaard, Marianne			<i>Pentaplacodinium saltonense</i> gen. et sp nov (Dinophyceae) and its relationship to the cyst-defined genus <i>Operculodinium</i> and yessotoxin-producing <i>Protoceratium reticulatum</i>	HARMFUL ALGAE			English	Article						Pentaplacodinium; Protoceratium; Precingular plates; Salton Sea; Ceratocorys; Operculodinium; Cribroperidinioideae	PROCESS LENGTH VARIATION; ALEXANDRIUM DINOPHYCEAE; RIBOSOMAL DNA; SEQUENCE DATA; SEA; SALINITY; STRAINS; GENERA; LIGHT; ULTRASTRUCTURE	Strains of a dinoflagellate from the Salton Sea, previously identified as Protoceratium reticulatum and yessotoxin producing, have been reexamined morphologically and genetically and Pentaplacodinium saltonense n. gen. et sp. is erected to accommodate this species. Pentaplacodinium saltonense differs from Protoceratium reticulatum (Claparede et Lachmann 1859) Biltschli 1885 in the number of precingular plates (five vs. six), cingular displacement (two widths vs. one), and distinct cyst morphology. Incubation experiments (excystment and encystment) show that the resting cyst of Pentaplacodinium saltonense is morphologically most similar to the cyst-defined species Operculodinium israelianum (Rossignol, 1962) Wall (1967) and 0. psilatum Wall (1967). Collections of comparative material from around the globe (including Protoceratium reticulatum and the genus Ceratocorys) and single cell PCR were used to clarify molecular phylogenies. Variable regions in the LSU (three new sequences), SSU (12 new sequences) and intergenic ITS 1-2 (14 new sequences) were obtained. These show that Pentaplacodinium saltonense and Protoceratium reticulatum form two distinct clades. Pentaplacodinium saltonense forms a monophyletic Glade with several unidentified strains from Malaysia. LSU and SSU rDNA sequences of three species of Ceratocorys (C armata, C gourreti, C horrida) from the Mediterranean and several other unidentified strains from Malaysia form a well-supported sister clade. The unique phylogenetic position of an unidentified strain from Hawaii is also documented and requires further examination. In addition, based on the V9 SSU topology (bootstrap values >80%), specimens from Elands Bay (South Africa), originally described as Gonyaulax grindleyi by Reinecke (1967), cluster with Protoceratilim reticulatum. The known range of Pentaplacodinium saltonense is tropical to subtropical, and its cyst is recorded as a fossil in upper Cenozoic sediments. Protoceratium reticulatum and Pentaplacodiniutn saltonense seem to inhabit different niches: motile stages of these dinoflagellates have not been found in the same plankton sample. (C) 2017 Elsevier B.V. All rights reserved.	[Mertens, Kenneth Neil] Univ Ghent, Res Unit Palaeontol, Krijgslaan 281 S8, B-9000 Ghent, Belgium; [Carbonell-Moore, M. Consuelo] Oregon State Univ, Coll Agr Sci, Dept Bot & Plant Pathol, 2082 Cordley Hall, Corvallis, OR 97331 USA; [Pospelova, Vera] Univ Victoria, Sch Earth & Ocean Sci, OEASB A405,POB 1700,Box 1700 STN CSC, Victoria, BC V8W 2Y2, Canada; [Head, Martin J.] Brock Univ, Dept Earth Sci, 1812 Sir Isaac Brock Way, St Catharines, ON L2S 3A1, Canada; [Highfield, Andrea; Schroeder, Declan] Marine Biol Assoc UK, Citadel Hill, Plymouth PL1 2PB, Devon, England; [Schroeder, Declan] Univ Reading, Sch Biol Sci, Reading RG6 6AJ, Berks, England; [Gu, Haifeng] SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Andree, Karl B.; Fernandez, Margarita] IRTA, Km 5-5, San Carlos de la Rapita 43540, Spain; [Yamaguchi, Aika] Kobe Univ, Res Ctr Inland Seas, Kobe, Hyogo 6578501, Japan; [Takano, Yoshihito; Matsuoka, Kazumi] Nagasaki Univ, Inst East China Sea Res ECSER, 1551-7 Taira Machi, Nagasaki 8512213, Japan; [Nezan, Elisabeth; Bilien, Gwenael] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France; [Okolodkov, Yuri] Univ Veracruzana, Inst Ciencias Marinas & Pesquerias, Calle Hidalgo 617, Boca Del Rio 94290, Veracruz, Mexico; [Koike, Kazuhiko] Hiroshima Univ, Grad Sch Biosphere Sci, Kagamiyama 1-4-4, Higashihiroshima, Hiroshima 7398528, Japan; [Hoppenrath, Mona] Deutsch Zentrum Marine Biodivers Forsch DZMB, Sudstrand 44, D-26382 Wilhelmshaven, Germany; [Pfaff, Maya] Univ Cape Town, Ma RE Inst, Marine Biol Res Ctr, Zool Dept, ZA-7701 Rondebosch, South Africa; [Pitcher, Grant] Marine & Coastal Management, Private Bag X2, ZA-8012 Cape Town, South Africa; [Al-Muftah, Abdulrahman] Qatar Univ, Dept Biol & Environm Sci, Doha, Qatar; [Rochon, Andre] Univ Quebec Rimouski, Inst Sci Mer Rimouski ISMER, 310 Allee Ursulines, Rimouski, PQ G5L 3A1, Canada; [Lim, Po Teen; Leaw, Chui Pin; Lim, Zhen Fei] Univ Malaya, Inst Ocean & Earth Sci, Bachok 16310, Kelantan, Malaysia; [Ellegaard, Marianne] Univ Copenhagen, Dept Plant & Environm Sci, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark	Ghent University; Oregon State University; University of Victoria; Brock University; Marine Biological Association United Kingdom; University of Reading; Third Institute of Oceanography, Ministry of Natural Resources; IRTA; Kobe University; Nagasaki University; Ifremer; Universidad Veracruzana; Hiroshima University; University of Cape Town; Qatar University; University of Quebec; Universite du Quebec a Rimouski; Universiti Malaya; University of Copenhagen	Mertens, KN (通讯作者)，Univ Ghent, Res Unit Palaeontol, Krijgslaan 281 S8, B-9000 Ghent, Belgium.; Mertens, KN (通讯作者)，IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France.	kenneth.mertens29@gmail.com	Leaw, Chui Pin/F-5220-2012; Ellegaard, Marianne/H-6748-2014; Andree, Karl/L-7465-2014; Schroeder, Declan/O-9131-2019; Koike, Kazuhiko/A-3392-2019; Mertens, Kenneth/AAO-9566-2020; Gu, Haifeng/ADN-4528-2022; Fernandez-Tejedor, Margarita/J-9449-2013; Mertens, Kenneth/C-3386-2015; Lim, Po Teen/C-9758-2013	Kazuhiko, Koike/0000-0001-5380-5839; Gu, Haifeng/0000-0002-2350-9171; Fernandez-Tejedor, Margarita/0000-0002-2875-1135; Schroeder, Declan/0000-0001-5991-2838; Pospelova, Vera/0000-0003-4049-8133; Mertens, Kenneth/0000-0003-2005-9483; Lim, Po Teen/0000-0003-2823-0564	Natural Sciences and Engineering Research Council of Canada (NSERC); Institute Nacional de Investigacion y Tecnologia Agraria y Alimentaria of the Spanish Government [RTA2005-00109-00-00]; Natural Sciences and Engineering Research Council of Canada (NSERC); Institute Nacional de Investigacion y Tecnologia Agraria y Alimentaria of the Spanish Government [RTA2005-00109-00-00]	Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)); Institute Nacional de Investigacion y Tecnologia Agraria y Alimentaria of the Spanish Government; Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)); Institute Nacional de Investigacion y Tecnologia Agraria y Alimentaria of the Spanish Government	V.P. and M.J.H. each acknowledge support from a Discovery Grant of the Natural Sciences and Engineering Research Council of Canada (NSERC). K.B.A. and M.F. were supported by the Institute Nacional de Investigacion y Tecnologia Agraria y Alimentaria of the Spanish Government (project RTA2005-00109-00-00). CINVESTAV, Merida is thanked for supplying information about the Yucatan samples. Beatriz Paz is acknowledged for interesting discussions on toxicity. Anke Kremp, Maija Hutunnen, Jacob Larsen, Paul Hargraves and Ximena Vivanco kindly provided plankton samples. Nancy Lewis and Margaret Beaton generously shared information on strains from Nova Scotia, Canada. Captain Brown, crew of the MSV Strickland, Ms. Sarah Thornton, and EOS313-2010 (University of Victoria) students are all thanked for their participation in sediment sample collection. Paul Hargraves kindly provided SEM images of P. saltonense from cultures established from the Indian River Lagoon.[SS]	Adachi M, 1996, J PHYCOL, V32, P424, DOI 10.1111/j.0022-3646.1996.00424.x; AI-Muftah A. 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J	Ellegaard, M; Godhe, A; Ribeiro, S				Ellegaard, Marianne; Godhe, Anna; Ribeiro, Sofia			Time capsules in natural sediment archives-Tracking phytoplankton population genetic diversity and adaptation over multidecadal timescales in the face of environmental change	EVOLUTIONARY APPLICATIONS			English	Review						diatom; dinoflagellate; environmental change; marine; population genetics; resting stage; sediment record	SEED BANKS; FJORD; ACIDIFICATION; VIABILITY; EVOLUTION; LINKING	Undisturbed records of resting stages produced in the past and stored in coastal sediments are very valuable to science, because they may provide unique insights into past evolutionary and ecological trajectories. Within marine phytoplankton, multidecadal time series of monoclonal strains germinated from resting stages have been established for diatoms (Skeletonema marinoi) and dinoflagellates (Pentapharsodinium dalei), spanning ca. a century. Phenotypic and genotypic analyses of these time series have revealed effects of past environmental changes on population genetic structure. Future perspectives include direct comparisons of phenotypes and genotypic data of populations, for example, by genomewide assays that can correlate phenotypic trends with genotypes and allele frequencies in temporally separated strains. Besides their usefulness as historical records, "seed" banks of phytoplankton resting stages also have the potential to provide an inoculum that influences present populations through "dispersal from the past" (the storage effect) and are important for adaptation to future environments through their standing genetic diversity.	[Ellegaard, Marianne] Univ Copenhagen, Dept Plant & Environm Sci, Frederiksberg, Denmark; [Godhe, Anna] Univ Gothenburg, Dept Marine Sci, Gothenburg, Sweden; [Ribeiro, Sofia] Geol Survey Denmark & Greenland GEUS, Glaciol & Climate Dept, Copenhagen K, Denmark	University of Copenhagen; University of Gothenburg; Geological Survey Of Denmark & Greenland	Ellegaard, M (通讯作者)，Univ Copenhagen, Dept Plant & Environm Sci, Frederiksberg, Denmark.	me@plen.ku.dk	Ribeiro, Sofia/AAZ-2782-2021; Ribeiro, Sofia/G-9213-2018; Ellegaard, Marianne/H-6748-2014	Ribeiro, Sofia/0000-0003-0672-9161; Ellegaard, Marianne/0000-0002-6032-3376	Villum Foundation, Denmark [VKR23454]; Swedish Research Council Formas [219-2012-2070]	Villum Foundation, Denmark(Villum Fonden); Swedish Research Council Formas(Swedish Research Council Formas)	Villum Foundation, Denmark, Grant/Award Number: VKR23454; Swedish Research Council Formas, Grant/Award Number: 219-2012-2070	Almany GR, 2009, MOL ECOL RESOUR, V9, P1460, DOI 10.1111/j.1755-0998.2009.02759.x; ANDERSEN F, 1998, MARIAGER FJORD UDVIK; Andersen TJ, 2017, DEV PALEOENVIRON RES, V20, P121, DOI 10.1007/978-94-024-0990-1_6; Becks L, 2012, ECOL LETT, V15, P492, DOI 10.1111/j.1461-0248.2012.01763.x; Blomberg A., 2010, CURRENT OPINIONS BIO, V22, P1; De Meester L, 2014, J LIMNOL, V73, P193, DOI 10.4081/jlimnol.2014.831; Ellegaard M, 2013, MICROPALEAEONTOLOGIC, P149; Ellegaard M., 2017, BIOL REV; Ellegaard M, 2006, ESTUAR COAST SHELF S, V68, P567, DOI 10.1016/j.ecss.2006.03.013; Fallesen G, 2000, J MARINE SYST, V25, P313, DOI 10.1016/S0924-7963(00)00024-5; Feifel KM, 2015, HARMFUL ALGAE, V47, P56, DOI 10.1016/j.hal.2015.05.009; Godhe A, 2016, J BIOGEOGR, V43, P1130, DOI 10.1111/jbi.12722; Godhe A, 2010, MOL ECOL, V19, P4478, DOI 10.1111/j.1365-294X.2010.04841.x; Härnström K, 2011, P NATL ACAD SCI USA, V108, P4252, DOI 10.1073/pnas.1013528108; Hairston NG, 2002, INTEGR COMP BIOL, V42, P481, DOI 10.1093/icb/42.3.481; Harland R, 2004, REV PALAEOBOT PALYNO, V128, P119, DOI 10.1016/S0034-6667(03)00116-7; Kooistra WHCF, 2008, PROTIST, V159, P177, DOI 10.1016/j.protis.2007.09.004; Krehenwinkel H, 2015, GLOBAL CHANGE BIOL, V21, P4320, DOI 10.1111/gcb.13042; Kremp A, 2016, ENVIRON MICROBIOL, V18, P679, DOI 10.1111/1462-2920.13070; Lebret K, 2012, ENVIRON MICROBIOL, V14, P2395, DOI 10.1111/j.1462-2920.2012.02769.x; Lennon JT, 2011, NAT REV MICROBIOL, V9, P119, DOI 10.1038/nrmicro2504; Lohbeck KT, 2012, NAT GEOSCI, V5, P346, DOI [10.1038/ngeo1441, 10.1038/NGEO1441]; Lundholm N, 2017, ECOL EVOL, V7, P3132, DOI 10.1002/ece3.2906; Lundholm N, 2014, J APPL PHYCOL, V26, P417, DOI 10.1007/s10811-013-0123-3; Lundholm N, 2011, PHYCOLOGIA, V50, P629, DOI 10.2216/11-16.1; McQuoid MR, 2002, EUR J PHYCOL, V37, P191, DOI 10.1017/S0967026202003670; Miyazono A, 2012, HARMFUL ALGAE, V16, P81, DOI 10.1016/j.hal.2012.02.001; Narum SR, 2011, MOL ECOL RESOUR, V11, P184, DOI 10.1111/j.1755-0998.2011.02987.x; Ribeiro S, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0061184; Ribeiro S, 2011, NAT COMMUN, V2, DOI 10.1038/ncomms1314; Rochon A., 1999, AM ASS STRATIGR PALY, V35, P146; Schlüter L, 2014, NAT CLIM CHANGE, V4, P1024, DOI 10.1038/NCLIMATE2379; Sildever S, 2016, ENVIRON MICROBIOL, V18, P4403, DOI 10.1111/1462-2920.13372; STOCKNER JG, 1970, LIMNOL OCEANOGR, V15, P41; Tesson SVM, 2014, PLOS ONE, V9, DOI 10.1371/journal.pone.0114984; WARNER RR, 1985, AM NAT, V125, P769, DOI 10.1086/284379	36	12	15	1	22	WILEY	HOBOKEN	111 RIVER ST, HOBOKEN 07030-5774, NJ USA	1752-4571			EVOL APPL	Evol. Appl.	JAN	2018	11	1			SI		11	16		10.1111/eva.12513	http://dx.doi.org/10.1111/eva.12513			6	Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Evolutionary Biology	FR4VI	29302268	Green Published, gold			2025-03-11	WOS:000419064100002
J	Kremp, A; Hinners, J; Klais, R; Leppänen, AP; Kallio, A				Kremp, Anke; Hinners, Jana; Klais, Riina; Leppaenen, Ari-Pekka; Kallio, Antti			Patterns of vertical cyst distribution and survival in 100-year-old sediment archives of three spring dinoflagellate species from the Northern Baltic Sea	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						Baltic Sea; bloom expansion; dinoflagellate cysts; eutrophication; sediment archives	SCRIPPSIELLA-HANGOEI; PHYTOPLANKTON COMMUNITIES; RESTING CYST; DINOPHYCEAE; GERMINATION; ENCYSTMENT; BLOOM; NOV; ALEXANDRIUM; VIABILITY	The history of expansion of bloom-forming cold water dinoflagellates in the Northern Baltic Sea was studied using 100-year-old sediment archives of their resting cysts. Vertical cyst distributions of Biecheleria baltica and Apocalathium malmogiense, two dinoflagellates indistinguishable by light microscopy and not recognized as distinct species in monitoring, and chain-forming Peridiniella catenata were analysed in Pb-210 and Cs-137 dated layers of a sediment core from deep, hypoxic accumulation bottoms of the Gulf of Finland. Cyst profiles showed that B. baltica and A. malmogiense were already present in the Baltic spring phytoplankton community at the beginning of the 20th century. This confirms that B. baltica, which was only recognized in the late 1980s, is a native species in the area. A drastic increase in B. baltica cyst concentrations in the 1930s to 1960s coincided with the acceleration of anthropogenic eutrophication. Large cyst deposits accumulated over several decades in the sediment which, by the 1980s, amounted to the seed stock necessary to inoculate dominant blooms. In the cyst records A. malmogiense always contributed a minor fraction of the two species. P. catenata had a relatively short cyst record in Gulf of Finland sediments despite demonstrated long-term presence in the plankton, which emphasizes that cyst-based historic surveys are not suitable for all cyst-forming dinoflagellates. This was corroborated by correspondence analyses of long-term plankton and cyst records which validated the trends from the sediment archive for B. baltica and A. malmogiense, but failed to do so for P. catenata. Germination experiments with 100-year-old cysts revealed a remarkable long-term survival capacity of A. malmogiense, making this species a suitable model for resurrection studies testing adaptation in heavily impacted systems such as the Baltic Sea.	[Kremp, Anke] Finnish Environm Inst, Marine Res Ctr, Erik Palmenin Aukio 1, Helsinki 00560, Finland; [Hinners, Jana] Univ Hamburg, Ctr Earth Syst Res & Sustainabil, Inst Hydrobiol & Fisheries Sci, Grosse Elbstr 133, D-22767 Hamburg, Germany; [Klais, Riina] Tartu Univ, Estonian Marine Inst, Maealuse 14, EE-12618 Tallinn, Estonia; [Leppaenen, Ari-Pekka; Kallio, Antti] Radiat & Nucl Safety Author STUK, Environm Surveillance & Measurement, Lahteentie 2, FI-96400 Rovaniemi, Finland; [Leppaenen, Ari-Pekka] Preparatory Commiss Comprehens Nucl Test Ban Trea, Wagramerstr 5, A-1400 Vienna, Austria	Finnish Environment Institute; University of Hamburg; University of Tartu; Estonian Marine Institute; Radiation & Nuclear Safety Authority (STUK); International Atomic Energy Agency	Kremp, A (通讯作者)，Finnish Environm Inst, Marine Res Ctr, Erik Palmenin Aukio 1, Helsinki 00560, Finland.	anke.kremp@ymparisto.fi		Kallio, Antti/0000-0002-1466-3118; Hinners, Jana/0000-0002-5145-2539	Academy of Finland [251564, 283061]; Walter and Andre de Nottbeck Foundation; Landesforschungsforderung Hamburg [LFF-OS 20-2014]; Academy of Finland (AKA) [283061] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Walter and Andre de Nottbeck Foundation; Landesforschungsforderung Hamburg; Academy of Finland (AKA)(Research Council of Finland)	Funding was provided by the Academy of Finland (grants 251564 and 283061) and the Walter and Andre de Nottbeck Foundation (to AK). J. Hinners acknowledges the support of Landesforschungsforderung Hamburg LFF-OS 20-2014. Radionuclide measurements were done as a part of the HELCOM-MORS cooperation.	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J. Phycol.		2018	53	2					135	145		10.1080/09670262.2017.1386330	http://dx.doi.org/10.1080/09670262.2017.1386330			11	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	GE9JN					2025-03-11	WOS:000431546100003
J	Rogelja, M; Cibic, T; Rubino, F; Belmonte, M; Del Negro, P				Rogelja, Manja; Cibic, Tamara; Rubino, Fernando; Belmonte, Manuela; Del Negro, Paola			Active and resting microbenthos in differently contaminated marine coastal areas: insights from the Gulf of Trieste (northern Adriatic, Mediterranean Sea)	HYDROBIOLOGIA			English	Article						Microphytobenthos; Plankton resting stages; Benthic primary production; Oxygen consumption	MICROPHYTOBENTHIC PRIMARY PRODUCTION; DINOFLAGELLATE CYST ASSEMBLAGES; SUBLITTORAL SEDIMENTS; INTEGRATED APPROACH; SPECIES COMPOSITION; SURFACE SEDIMENTS; ORGANIC-CARBON; POLLUTION; NITROGEN; ABUNDANCE	Marine benthic microalgae are a promising bioindicator of contamination. To date, however, investigations on the microbenthic communities subjected to multiple stressors in natural environments are still very rare. To assess whether the benthic processes of primary production and oxygen consumption, and the structure of active and resting microbenthos, were affected by sediment contamination, seven stations were sampled in different zones of the port of Trieste, subjected to multiple and diffuse contamination, and a reference site in the Marine Reserve of Miramare. No major differences in total abundance of active microbenthos were observed among sites, but the dominance of stress-resistant species and the reduction of more sensitive ones, were registered nearby the main productive activities. The densities of resting microbenthos were higher in polluted areas, and represented by key dinoflagellate species that were clearly linked to contamination. The analysis of similarity applied to both active and resting communities significantly separated the most contaminated stations from the other ones. The photosynthetic capability of active microbenthos did not seem to be affected by contamination. The maximum oxygen consumption rates observed in sediments nearby the productive activities were likely ascribable to high organic C contents and the presence of metals in reduced chemical form.	[Rogelja, Manja; Cibic, Tamara; Del Negro, Paola] Ist Nazl Oceanog & Geofis Sperimentale OGS, Sez Oceanog, I-34151 Trieste, Italy; [Rubino, Fernando; Belmonte, Manuela] CNR, Ist Ambiente Marino Costiero, Talassog A Cerruti, I-74123 Taranto, Italy; [Rogelja, Manja] Aquarium Piran Acad Elect & Maritime High Sch, Bolniska 11, Piran 6330, Slovenia	Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Consiglio Nazionale delle Ricerche (CNR); L'Istituto per l'Ambiente Marino Costiero (IAMC-CNR)	Cibic, T (通讯作者)，Ist Nazl Oceanog & Geofis Sperimentale OGS, Sez Oceanog, I-34151 Trieste, Italy.	tcibic@inogs.it	Belmonte, Marisol/AAG-9759-2019; Rubino, Fernando/GOP-0332-2022	Cibic, Tamara/0000-0003-1519-4891; DEL NEGRO, Paola/0000-0003-2465-4896; Rubino, Fernando/0000-0003-2552-2510	Project Bandiera 'RITMARE-La Ricerca Italiana per il Mare'; Italian Ministry for Education, University and Research; 'Autorita' Portuale di Trieste' (Port Authority of Trieste)	Project Bandiera 'RITMARE-La Ricerca Italiana per il Mare'; Italian Ministry for Education, University and Research(Ministry of Education, Universities and Research (MIUR)); 'Autorita' Portuale di Trieste' (Port Authority of Trieste)	The activities described in this study were funded by the Project Bandiera 'RITMARE-La Ricerca Italiana per il Mare' coordinated by the National Research Council (C.N.R.) and funded by the Italian 'Ministry for Education, University and Research' within the National Research Programme 2011-2013. 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J	Deng, YY; Hu, ZX; Shang, LX; Peng, QC; Tang, YZ				Deng, Yunyan; Hu, Zhangxi; Shang, Lixia; Peng, Quancai; Tang, Ying Zhong			Transcriptomic Analyses of <i>Scrippsiella trochoidea</i> Reveals Processes Regulating Encystment and Dormancy in the Life Cycle of a Dinoflagellate, with a Particular Attention to the Role of Abscisic Acid	FRONTIERS IN MICROBIOLOGY			English	Article						resting cyst; harmful algal blooms (HABs); dormancy; UHPLC-MS/MS; abscisicacid (ABA); dinoflagellate; Scrippsiella trochoidea	HARMFUL ALGAL BLOOMS; GENE-EXPRESSION; SEED DORMANCY; ZEAXANTHIN EPOXIDASE; AKASHIWO-SANGUINEA; CYST PRODUCTION; PHOTOSYSTEM-I; ORYZA-SATIVA; RNA-SEQ; BIOSYNTHESIS	Due to the vital importance of resting cysts in the biology and ecology of many dinoflagellates, a transcriptomic investigation on Scrippsiella trochoidea was conducted with the aim to reveal the molecular processes and relevant functional genes regulating encystment and dormancy in dinoflagellates. We identified via RNA-seq 3,874 (out of 166,575) differentially expressed genes (DEGs) between resting cysts and vegetative cells; a pause of photosynthesis (confirmed via direct measurement of photosynthetic efficiency); an active catabolism including beta-oxidation, glycolysis, glyoxylate pathway, and TCA in resting cysts (tested via measurements of respiration rate); 12 DEGs encoding meiotic recombination proteins and members of MEI2-like family potentially involved in sexual reproduction and encystment; elevated expressions in genes encoding enzymes responding to pathogens (chitin deacetylase) and ROS stress in cysts; and 134 unigenes specifically expressed in cysts. We paid particular attention to genes pertaining to phytohormone signaling and identified 4 key genes regulating abscisic acid (ABA) biosynthesis and catabolism, with further characterization based on their full-length cDNA obtained via RACE-PCR. The qPCR results demonstrated elevated biosynthesis and repressed catabolism of ABA during the courses of encystment and cyst dormancy, which was significantly enhanced by lower temperature (4 +/- 1 degrees C) and darkness. Direct measurements of ABA using UHPLC-MS/MS and ELISA in vegetative cells and cysts both fully supported qPCR results. These results collectively suggest a vital role of ABA in regulating encystment and maintenance of dormancy, akin to its function in seed dormancy of higher plants. Our results provided a critical advancement in understanding molecular processes in resting cysts of dinoflagellates.	[Deng, Yunyan; Hu, Zhangxi; Shang, Lixia; Tang, Ying Zhong] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Deng, Yunyan; Hu, Zhangxi; Tang, Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China; [Peng, Quancai] Chinese Acad Sci, Inst Oceanol, Res Ctr Anal & Measurement, Qingdao, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; Institute of Oceanology, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023		NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences [U1606404]; National Science Foundation of China [41476142, 41606126, 61533011, 41506143, U1301235]; Scientific and Technological Innovation Project; Qingdao National Laboratory for Marine Science and Technology [2016ASKJ02]	NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences; National Science Foundation of China(National Natural Science Foundation of China (NSFC)); Scientific and Technological Innovation Project; Qingdao National Laboratory for Marine Science and Technology	This research was financially supported by the NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences (Grant No. U1606404), National Science Foundation of China (Grant Nos. 41476142 and 41606126), the Scientific and Technological Innovation Project Financially Supported by Qingdao National Laboratory for Marine Science and Technology (Grant No. 2016ASKJ02), and National Science Foundation of China (Grant Nos. 61533011, 41506143, and U1301235).	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Microbiol.	DEC 11	2017	8								2450	10.3389/fmicb.2017.02450	http://dx.doi.org/10.3389/fmicb.2017.02450			19	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	FP4HK	29312167	Green Published, gold			2025-03-11	WOS:000417577500001
J	Lugliè, A; Giacobbe, MG; Riccardi, E; Bruno, M; Pigozzi, S; Mariani, MA; Satta, CT; Stacca, D; Bazzoni, AM; Caddeo, T; Farina, P; Padedda, BM; Pulina, S; Sechi, N; Milandri, A				Luglie, Antonella; Giacobbe, Maria Grazia; Riccardi, Elena; Bruno, Milena; Pigozzi, Silvia; Mariani, Maria Antonietta; Satta, Cecilia Teodora; Stacca, Daniela; Bazzoni, Anna Maria; Caddeo, Tiziana; Farina, Pasqualina; Padedda, Bachisio Mario; Pulina, Silvia; Sechi, Nicola; Milandri, Anna			Paralytic Shellfish Toxins and Cyanotoxins in the Mediterranean: New Data from Sardinia and Sicily (Italy)	MICROORGANISMS			English	Article						paralytic shellfish toxins; microcystins; BMAA; Alexandrium; artificial lakes; Mediterranean	METHYLAMINO-L-ALANINE; TAMARENSE SPECIES COMPLEX; HARMFUL ALGAL BLOOMS; DINOFLAGELLATE ALEXANDRIUM-CATENELLA; CYANOBACTERIAL GENUS ANABAENA; POISONING TOXINS; LIQUID-CHROMATOGRAPHY; FLUORESCENCE DETECTION; SUBG. DOLICHOSPERMUM; CYST ASSEMBLAGES	Harmful algal blooms represent a severe issue worldwide. They affect ecosystem functions and related services and goods, with consequences on human health and socio-economic activities. This study reports new data on paralytic shellfish toxins (PSTs) from Sardinia and Sicily (Italy), the largest Mediterranean islands where toxic events, mainly caused by Alexandrium species (Dinophyceae), have been ascertained in mussel farms since the 2000s. The toxicity of the A. minutum, A. tamarense and A. pacificum strains, established from the isolation of vegetative cells and resting cysts, was determined by high performance liquid chromatography (HPLC). The analyses indicated the highest toxicity for A. pacificum strains (total PSTs up to 17.811 fmol cell(-1)). The PSTs were also assessed in a strain of A. tamarense. The results encourage further investigation to increase the knowledge of toxic species still debated in the Mediterranean. This study also reports new data on microcystins (MCs) and beta-N-methylamino-L-alanine (BMAA) from a Sardinian artificial lake (Lake Bidighinzu). The presence of MCs and BMAA was assessed in natural samples and in cell cultures by enzyme-linked immunosorbent assay (ELISA). BMAA positives were found in all the analysed samples with a maximum of 17.84 mu g L-1. The obtained results added further information on cyanotoxins in Mediterranean reservoirs, particularly BMAA, which have not yet been thoroughly investigated.	[Luglie, Antonella; Mariani, Maria Antonietta; Satta, Cecilia Teodora; Stacca, Daniela; Caddeo, Tiziana; Farina, Pasqualina; Padedda, Bachisio Mario; Pulina, Silvia; Sechi, Nicola] Univ Sassari, Dipartimento Architettura Design & Urbanist, Via Piandanna 4, I-07100 Sassari, Italy; [Giacobbe, Maria Grazia] CNR, Ist Ambiente Marino Costiero, Spianata S Raineri 86, I-98122 Messina, Italy; [Riccardi, Elena; Pigozzi, Silvia; Milandri, Anna] Fdn Ctr Ric Marine, Natl Reference Lab Marine Biotoxins, Viale A Vespucci 2, I-47042 Cesenatico, FC, Italy; [Bruno, Milena] Ist Super Sanita, Environm Qual & Fish Farming, Environm & Primary Prevent, Vle Regina Elena 299, I-00161 Rome, Italy; [Satta, Cecilia Teodora] Agenzia Reg Ric Agr AGRIS, Serv Itt, SS Sassari Fertilia Km 18, I-07040 Bonassai, Olmedo, Italy; [Bazzoni, Anna Maria] Ist Zooprofilatt Sperimentale Sardegna G Pegreffi, Dipartimento Ispez Alimenti, Via Duca Abruzzi 8, I-07100 Sassari, Italy; [Pulina, Silvia] Univ Cagliari, Dept Life & Environm Sci, Via Fiorelli 1, I-09126 Cagliari, Italy	University of Sassari; Consiglio Nazionale delle Ricerche (CNR); L'Istituto per l'Ambiente Marino Costiero (IAMC-CNR); Istituto Superiore di Sanita (ISS); IZS Della Sardegna; University of Cagliari	Satta, CT (通讯作者)，Univ Sassari, Dipartimento Architettura Design & Urbanist, Via Piandanna 4, I-07100 Sassari, Italy.; Satta, CT (通讯作者)，Agenzia Reg Ric Agr AGRIS, Serv Itt, SS Sassari Fertilia Km 18, I-07040 Bonassai, Olmedo, Italy.	luglie@uniss.it; mariagrazia.giacobbe@iamc.cnr.it; elena.riccardi@centroricerchemarine.it; milena.bruno@iss.it; silvia.pigozzi@centroricerchemarine.it; marianim@uniss.it; ctsatta@uniss.it; dstacca@uniss.it; bazzoni.annamaria@tiscali.it; tcaddeo@uniss.it; pasqui81@hotmail.it; bmpadedda@uniss.it; pulinasi@uniss.it; sechi@uniss.it; anna.milandri@centroricerchemarine.it	Satta, Cecilia Teodora/AAF-6417-2020; Luglie, Antonella/M-4321-2015; PULINA, Silvia/Q-2684-2017	SATTA, Cecilia Teodora/0000-0003-0130-9432; Luglie, Antonella/0000-0001-6382-4208; Bazzoni, Anna Maria/0000-0001-7236-3845; PULINA, Silvia/0000-0002-4861-4170				Adachi M, 1996, J PHYCOL, V32, P1049, DOI 10.1111/j.0022-3646.1996.01049.x; Anderson DM, 2012, HARMFUL ALGAE, V14, P10, DOI 10.1016/j.hal.2011.10.012; Anderson DM, 2009, OCEAN COAST MANAGE, V52, P342, DOI 10.1016/j.ocecoaman.2009.04.006; Anglès S, 2012, HARMFUL ALGAE, V16, P1, DOI 10.1016/j.hal.2011.12.006; [Anonymous], 2003, BOCCONEA; Balech E., 1995, GENUS ALEXANDRIUM HA, P1; Banack SA, 2015, TOXINS, V7, P322, DOI 10.3390/toxins7020322; Batoréu MCC, 2005, ENVIRON TOXICOL PHAR, V19, P401, DOI 10.1016/j.etap.2004.12.002; Bazzoni AM, 2015, ENVIRON MONIT ASSESS, V187, DOI 10.1007/s10661-014-4250-3; Boero F, 1996, TRENDS ECOL EVOL, V11, P177, DOI 10.1016/0169-5347(96)20007-2; Borghero G, 2014, AGING-US, V35; Bravo I, 2008, HARMFUL ALGAE, V7, P515, DOI 10.1016/j.hal.2007.11.005; Bravo I, 2006, EUR J PHYCOL, V41, P293, DOI 10.1080/09670260600810360; Bricelj V. 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J	Lau, WLS; Law, IK; Liow, GR; Hii, KS; Usup, G; Lim, PT; Leaw, CP				Lau, Winnie Lik Sing; Law, Ing Kuo; Liow, Guat Ru; Hii, Kieng Soon; Usup, Gires; Lim, Po Teen; Leaw, Chui Pin			Life-history stages of natural bloom populations and the bloom dynamics of a tropical Asian ribotype of <i>Alexandrium minuturn</i>	HARMFUL ALGAE			English	Article						HAB dynamics; Paralytic shellfish poisoning (PSP); Planozygote; Resting cyst; Saxitoxin	DINOFLAGELLATE GONYAULAX-TAMARENSIS; TOXIC DINOFLAGELLATE; CYST FORMATION; PHYLOGENETIC ANALYSIS; GYRODINIUM-UNCATENUM; CELL-CYCLE; DINOPHYCEAE; GROWTH; BAY; SEXUALITY	In 2015, a remarkably high density bloom of Alexandrium minutum occurred in Sungai Geting, a semi enclosed lagoon situated in the northeast of Peninsular Malaysia, causing severe discoloration and contaminated the benthic clams (Polymesoda). Plankton and water samples were collected to investigate the mechanisms of bloom development of this toxic species. Analysis of bloom samples using flow cytometry indicated that the bloom was initiated by the process of active excystment, as planomycetes (>4C cells) were observed in the early stage of the bloom. Increase in planozygotes (2C cells) was evident during the middle stage of the bloom, coinciding with an abrupt decrease in salinity and increase of temperature. The bloom was sustained through the combination of binary division of vegetative cells, division of planozygotes, and cyst germination through continuous excystment. Nutrient depletion followed by precipitation subsequently caused the bloom to terminate. This study provides the first continuous record of in situ life-cycle stages of a natural bloom population of A. minutum through a complete bloom cycle. The event has provided a fundamental understanding of the pelagic life-cycle stages of this tropical dinoflagellate, and demonstrated a unique bloom development characteristic shared among toxic Alexandrium species in coastal embayments. (C) 2017 Elsevier B.V. All rights reserved.	[Lau, Winnie Lik Sing; Law, Ing Kuo; Liow, Guat Ru; Hii, Kieng Soon; Lim, Po Teen; Leaw, Chui Pin] Univ Malaya, Inst Ocean & Earth Sci, Bachok 16310, Kelantan, Malaysia; [Usup, Gires] Univ Kebangsaan Malaysia, Fac Sci & Technol, Bangi 43600, Malaysia	Universiti Malaya; Universiti Kebangsaan Malaysia	Lim, PT; Leaw, CP (通讯作者)，Univ Malaya, Inst Ocean & Earth Sci, Bachok 16310, Kelantan, Malaysia.	ptlim@um.edu.my; chuipinleaw@gmail.com	Hii, Kieng/R-2176-2017; Leaw, Chui Pin/F-5220-2012; Lim, Po Teen/C-9758-2013	Leaw, Chui Pin/0000-0003-3336-1438; Hii, Kieng Soon/0000-0001-6905-3045; Lim, Po Teen/0000-0003-2823-0564	Malaysian government through the Ministry of Higher Education under HICoE Fund [IOES-2014C]; Ministry of Science, Technology and Innovation [04-01-03-SF1011]; JSPS Core-to-Core Program; Ministry of Higher Education MyBrain Scholarship	Malaysian government through the Ministry of Higher Education under HICoE Fund; Ministry of Science, Technology and Innovation(Ministry of Energy, Science, Technology, Environment and Climate Change (MESTECC), Malaysia); JSPS Core-to-Core Program(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); Ministry of Higher Education MyBrain Scholarship	This work was funded by the Malaysian government through the Ministry of Higher Education under HICoE Fund [IOES-2014C]; and Ministry of Science, Technology and Innovation under Sciencefund [04-01-03-SF1011]. We acknowledged the research networking of JSPS Core-to-Core Program. WLS Lau was supported by the Ministry of Higher Education MyBrain Scholarship, and this work formed part of her MSc project. This work is dedicated to the memory of Prof. Paul J. Harrison (UBC).[SS]	ANDERSON DM, 1983, MAR BIOL, V76, P179, DOI 10.1007/BF00392734; ANDERSON DM, 1985, J PHYCOL, V21, P200; ANDERSON DM, 1985, J EXP MAR BIOL ECOL, V86, P1, DOI 10.1016/0022-0981(85)90039-5; ANDERSON DM, 1984, J PHYCOL, V20, P418, DOI 10.1111/j.0022-3646.1984.00418.x; Anglès S, 2012, HARMFUL ALGAE, V16, P20, DOI 10.1016/j.hal.2011.12.008; Anglès S, 2012, HARMFUL ALGAE, V16, P1, DOI 10.1016/j.hal.2011.12.006; [Anonymous], 1998, PHYSL ECOLOGY HARMFU; Bajarias F. 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J	Natsuike, M; Saito, R; Fujiwara, A; Matsuno, K; Yamaguchi, A; Shiga, N; Hirawake, T; Kikuchi, T; Nishino, S; Imai, I				Natsuike, Masafumi; Saito, Rui; Fujiwara, Amane; Matsuno, Kohei; Yamaguchi, Atsushi; Shiga, Naonobu; Hirawake, Toru; Kikuchi, Takashi; Nishino, Shigeto; Imai, Ichiro			Evidence of increased toxic <i>Alexandrium tamarense</i> dinoflagellate blooms in the eastern Bering Sea in the summers of 2004 and 2005	PLOS ONE			English	Article							LAWRENCE ESTUARY CANADA; CHUKCHI SEA; SHELF; WATER; ABUNDANCE; IMPACTS; CYSTS	The eastern Bering Sea has a vast continental shelf, which contains various endangered marine mammals and large fishery resources. Recently, high numbers of toxic A. tamarense resting cysts were found in the bottom sediment surface of the eastern Bering Sea shelf, suggesting that the blooms have recently occurred. However, little is known about the presence of A. tamarense vegetative cells in the eastern Bering Sea. This study's goals were to detect the occurrence of A. tamarense vegetative cells on the eastern Bering Sea shelf and to find a relationship between environmental factors and their presence. Inter-annual field surveys were conducted to detect A. tamarense cells and environmental factors, such as nutrients, salinity, chlorophyll a, and water temperature, along a transect line on the eastern Bering Sea shelf during the summers of 2004, 2005, 2006, 2009, 2012, and 2013. A. tamarense vegetative cells were detected during every sampling year, and their quantities varied greatly from year to year. The maximum cell densities of A. tamarense observed during the summers of 2004 and 2005 were much higher than the Paralytic shellfish poisoning warning levels, which are greater than 100-1,000 cells L-1, in other subarctic areas. Lower quantities of the species occurred during the summers of 2009, 2012, and 2013. A significant positive correlation between A. tamarense quantity and water temperature and significant negative correlations between A. tamarense quantity and nutrient concentrations (of phosphate, silicate, and nitrite and nitrate) were detected in every sampling period. The surface- and bottom-water temperatures varied significantly from year to year, suggesting that water temperatures, which have been known to affect the cell growth and cyst germination of A. tamarense, might have affected the cells' quantities in the eastern Bering Sea each summer. Thus, an increase in the Bering Sea shelf's water temperature during the summer will increase the frequency and scale of toxic blooms and the toxin contamination of plankton feeders. This poses serious threats to humans and the marine ecosystem.	[Natsuike, Masafumi; Matsuno, Kohei; Yamaguchi, Atsushi; Shiga, Naonobu; Hirawake, Toru; Imai, Ichiro] Hokkaido Univ, Grad Sch Fisheries Sci, Hakodate, Hokkaido, Japan; [Saito, Rui] Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime, Japan; [Fujiwara, Amane; Kikuchi, Takashi; Nishino, Shigeto] Japan Agcy Marine Earth Sci & Technol, Yokosuka, Kanagawa, Japan; [Natsuike, Masafumi] Tokyo Inst Technol, Sch Environm & Soc, Tokyo, Japan; [Shiga, Naonobu] Hakodate Jr Coll, Hakodate, Hokkaido, Japan	Hokkaido University; Ehime University; Japan Agency for Marine-Earth Science & Technology (JAMSTEC); Institute of Science Tokyo; Tokyo Institute of Technology	Natsuike, M (通讯作者)，Hokkaido Univ, Grad Sch Fisheries Sci, Hakodate, Hokkaido, Japan.; Natsuike, M (通讯作者)，Tokyo Inst Technol, Sch Environm & Soc, Tokyo, Japan.	natsuike.m.aa@m.titech.ac.jp	Saito, Reiko/B-9410-2015; Matsuno, Kohei/AAJ-6510-2021; Yamaguchi, Atsushi/A-8613-2012	Hirawake, Toru/0000-0003-0274-6642; NISHINO, Shigeto/0000-0002-0560-241X; Matsuno, Kohei/0000-0001-9793-7622; Yamaguchi, Atsushi/0000-0002-5646-3608	Japan Society for the Promotion of Science (JSPS) [24248032, 24110005]; GRENE Arctic Climate Change Research Project; Grants-in-Aid for Scientific Research [17H01483, 15H05712, 15KK0268] Funding Source: KAKEN	Japan Society for the Promotion of Science (JSPS)(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); GRENE Arctic Climate Change Research Project; Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	This study was supported by Grant-in-Aid for Scientific Research (A) 24248032 to AY, Grant-in-Aid for Scientific Research on Innovative Areas 24110005 to AY from the Japan Society for the Promotion of Science (JSPS), and GRENE Arctic Climate Change Research Project to SN. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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J	Brosnahan, ML; Ralston, DK; Fischer, AD; Solow, AR; Anderson, DM				Brosnahan, Michael L.; Ralston, David K.; Fischer, Alexis D.; Solow, Andrew R.; Anderson, Donald M.			Bloom termination of the toxic dinoflagellate <i>Alexandrium catenella</i>: Vertical migration behavior, sediment infiltration, and benthic cyst yield	LIMNOLOGY AND OCEANOGRAPHY			English	Article							GONYAULAX-TAMARENSIS; PHYTOPLANKTON BLOOMS; RESTING CYSTS; LIFE-CYCLE; CAPE-COD; DINOPHYCEAE; ENCYSTMENT; FUNDYENSE; ESTUARINE; DYNAMICS	New resting cyst production is crucial for the survival of many microbial eukaryotes including phytoplankton that cause harmful algal blooms. Production in situ has previously been estimated through sediment trap deployments, but here was instead assessed through estimation of the total number of planktonic cells and new resting cysts produced by a localized, inshore bloom of Alexandrium catenella, a dinoflagellate that is a globally important cause of paralytic shellfish poisoning. Our approach utilizes high frequency, automated water monitoring, weekly observation of new cyst production, and pre- and post-bloom spatial surveys of total resting cyst abundance. Through this approach, new cyst recruitment within the study area was shown to account for at least 10.9%+/- 2.6% (SE) of the bloom's decline, approximate to 5x greater than reported from comparable, sediment trap based studies. The observed distribution and timing of new cyst recruitment indicate that: (1) planozygotes, the immediate precursor to cysts in the life cycle, migrate nearer to the water surface than other planktonic stages and (2) encystment occurs after planozygote settlement on bottom sediments. Near surface localization by planozygotes explains the ephemerality of red surface water discoloration by A. catenella blooms, and also enhances the dispersal of new cysts. Following settlement, bioturbation and perhaps active swimming promote sediment infiltration by planozygotes, reducing the extent of cyst redistribution between blooms. The concerted nature of bloom sexual induction, especially in the context of an observed upper limit to A. catenella bloom intensities and heightened susceptibility of planozygotes to the parasite Amoebophrya, is also discussed.	[Brosnahan, Michael L.; Fischer, Alexis D.; Anderson, Donald M.] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA; [Ralston, David K.] Woods Hole Oceanog Inst, Appl Ocean Phys & Engn, Woods Hole, MA 02543 USA; [Solow, Andrew R.] Woods Hole Oceanog Inst, Marine Policy Ctr, Woods Hole, MA 02543 USA	Woods Hole Oceanographic Institution; Woods Hole Oceanographic Institution; Woods Hole Oceanographic Institution	Brosnahan, ML (通讯作者)，Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA.	mbrosnahan@whoi.edu	Fischer, Alexis/M-4531-2019	Ralston, David/0000-0002-0774-3101; Brosnahan, Michael/0000-0002-2620-7638; Fischer, Alexis/0000-0002-8028-487X	National Science Foundation [OCE-0430724, OCE-0911031, OCE-1314642]; National Institutes of Health through the Woods Hole Center for Oceans and Human Health [NIEHS-1P50-ES021923-01]; MIT Sea Grant [NA14OAR4170077]; Woods Hole Sea Grant [NA14OAR4170074, R/P-84]; National Park Service (NPS) [H238015504]; Directorate For Geosciences; Division Of Ocean Sciences [1314642] Funding Source: National Science Foundation	National Science Foundation(National Science Foundation (NSF)); National Institutes of Health through the Woods Hole Center for Oceans and Human Health; MIT Sea Grant; Woods Hole Sea Grant; National Park Service (NPS); Directorate For Geosciences; Division Of Ocean Sciences(National Science Foundation (NSF)NSF - Directorate for Geosciences (GEO))	Special thanks to Robert Olson for assistance in modification of the Imaging FlowCytobot, Micheil Boesel for technical assistance in the development of the observatory raft and its profiling winch, Heidi Sosik for assistance with image analysis, David Kulis, Madeline McKenna, Jennifer Haskell, and other staff and student members of the Anderson lab for assistance in collection and analysis of field samples, to Sophia Fox and Krista Lee (National Park Service) for nutrient analyses, and to other National Park Service staff at the Cape Cod National Seashore and Michael O'Connor, Dick Hilmer, and others at the Eastham Department of Natural Resources for assistance at the Salt Pond study site. This work was supported by the National Science Foundation (OCE-0430724, OCE-0911031, and OCE-1314642) and National Institutes of Health (NIEHS-1P50-ES021923-01) through the Woods Hole Center for Oceans and Human Health, MIT Sea Grant (NA14OAR4170077), Woods Hole Sea Grant (NA14OAR4170074, R/P-84), and National Park Service (NPS) Cooperative Agreement H238015504.	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J	Björk, G; Nordberg, K; Arneborg, L; Bornmalm, L; Harland, R; Robijn, A; Ödalen, M				Bjork, Goran; Nordberg, Kjell; Arneborg, Lars; Bornmalm, Lennart; Harland, Rex; Robijn, Ardo; Odalen, Malin			Seasonal oxygen depletion in a shallow sill fjord on the Swedish west coast	JOURNAL OF MARINE SYSTEMS			English	Article						Oxygen conditions; Hypoxia; Shallow fjord; Swedish west coast	MARINE BENTHIC HYPOXIA; GULLMAR FJORD; RECENT SEDIMENTS; DINOFLAGELLATE CYSTS; HYDROGRAPHIC DATA; ALGAL MATS; SKAGERRAK; SWEDEN; WATERS; FORAMINIFERA	During the summer of 2008, oxygen depleted water, between 5 and 12 m depth, was discovered in Sannasfjord on the Swedish west coast. The resulting sediments were black, benthic macrofauna were absent and Beggiatoa bacterial mats were a characteristic feature. This phenomenon, which was observed several years in a row, appears to be a relatively new phenomenon starting in the mid-1980s. In this study we attempt to find the underlying causes by investigating climatic effects (temperature, wind and precipitation), the local supply of nutrients from land, ecosystem change and the supply of organic material from the open Skagerrak. An analysis of long meteorological time series indicates that climatic effects are contributory, but probably not a dominating factor leading to hypoxia. Results from an advection-diffusion model solving for oxygen show that the observed increase in the river supply of nutrients has a high potential to generate hypoxia. Although complex and more difficult to quantify, it appears that ecosystem changes, with higher abundance of filamentous algae, may have played an important role. It is also possible that an enhanced supply of organic material from the open Skagerrak has contributed. (C) 2017 Elsevier B.V. All rights reserved.	[Bjork, Goran; Nordberg, Kjell; Arneborg, Lars; Bornmalm, Lennart; Robijn, Ardo] Univ Gothenburg, Dept Marine Sci, POB 460, SE-40530 Gothenburg, Sweden; [Harland, Rex] 50 Long Acre, Nottingham NG13 BAH, England; [Odalen, Malin] Stockholm Univ, Dept Meteorol MISU, SE-10691 Stockholm, Sweden; [Arneborg, Lars] SMHI, Sven Kallfelts Gata 15, SE-42671 Vastra Frolunda, Sweden	University of Gothenburg; Stockholm University; Swedish Meteorological & Hydrological Institute	Björk, G (通讯作者)，Univ Gothenburg, Dept Marine Sci, POB 460, SE-40530 Gothenburg, Sweden.	goran.bjork@marine.gu.se		Nordberg, Kjell/0000-0003-0085-4607; Arneborg, Lars/0000-0003-0248-8110; Robijn, Ardo/0000-0002-1160-9992	Region Vastra Gotaland "RUN MN" [612-0125-08]; County Administrative Board O-Lan; Wahlstroms Foundation; Lars Hierta Memorial Foundation; Department of Earth Sciences; Tanum Community Administration; Department of Marine Sciences (University of Gothenburg)	Region Vastra Gotaland "RUN MN"; County Administrative Board O-Lan; Wahlstroms Foundation; Lars Hierta Memorial Foundation; Department of Earth Sciences; Tanum Community Administration; Department of Marine Sciences (University of Gothenburg)	The authors sincerely thank everyone who helped to perform this study. The crews of R/V Skagerak and R/V Nereus assisted during sampling campaigns 2008 and 2009. We acknowledge the funding by Region Vastra Gotaland "RUN & MN" (ref 612-0125-08) (KN), County Administrative Board O-Lan and Tanum Community Administration (KN). Also we gratefully acknowledge Wahlstroms Foundation and Lars Hierta Memorial Foundation (KN) and the Department of Earth Sciences and Department of Marine Sciences (from July I, 2015) (University of Gothenburg) for the PhD student (AR) fellowship. RH acknowledges the efficient palynological processing undertaken by Mr. David Bodman of the Palynological Laboratories at the University of Sheffield, UK.	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J	Hardeland, R				Hardeland, Ruediger			Taxon- and Site-Specific Melatonin Catabolism	MOLECULES			English	Review						5-methoxytryptamine; CNS; dinoflagellates; indole metabolism; kynuramines; plants; yeast	METABOLITE N-1-ACETYL-5-METHOXYKYNURAMINE AMK; PINEAL-GLAND; NITRIC-OXIDE; BRAIN METABOLITE; ARYL ACYLAMIDASE; INDOLEAMINE 2,3-DIOXYGENASE; CYCLIC 3-HYDROXYMELATONIN; CEREBROSPINAL-FLUID; FREE-RADICALS; 5-METHOXYTRYPTAMINE	Melatonin is catabolized both enzymatically and nonenzymatically. Nonenzymatic processes mediated by free radicals, singlet oxygen, other reactive intermediates such as HOCl and peroxynitrite, or pseudoenzymatic mechanisms are not species- or tissue-specific, but vary considerably in their extent. Higher rates of nonenzymatic melatonin metabolism can be expected upon UV exposure, e.g., in plants and in the human skin. Additionally, melatonin is more strongly nonenzymatically degraded at sites of inflammation. Typical products are several hydroxylated derivatives of melatonin and N-1-acetyl-N-2-formyl-5-methoxykynuramine (AFMK). Most of these products are also formed by enzymatic catalysis. Considerable taxon- and site-specific differences are observed in the main enzymatic routes of catabolism. Formation of 6-hydroxymelatonin by cytochrome P-450 subforms are prevailing in vertebrates, predominantly in the liver, but also in the brain. In pineal gland and non-mammalian retina, deacetylation to 5-methoxytryptamine (5-MT) plays a certain role. This pathway is quantitatively prevalent in dinoflagellates, in which 5-MT induces cyst formation and is further converted to 5-methoxyindole-3-acetic acid, an end product released to the water. In plants, the major route is catalyzed by melatonin 2-hydroxylase, whose product is tautomerized to 3-acetamidoethyl-3-hydroxy-5-methoxyindolin-2-one (AMIO), which exceeds the levels of melatonin. Formation and properties of various secondary products are discussed.	[Hardeland, Ruediger] Univ Gottingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Burgerstr 50, D-37073 Gottingen, Germany	University of Gottingen	Hardeland, R (通讯作者)，Univ Gottingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Burgerstr 50, D-37073 Gottingen, Germany.	rhardel@gwdg.de						Acuña-Castroviejo D, 2003, ADV EXP MED BIOL, V527, P549; Acuña-Castroviejo D, 2014, CELL MOL LIFE SCI, V71, P2997, DOI 10.1007/s00018-014-1579-2; Agurla S, 2014, NITRIC OXIDE-BIOL CH, V43, P89, DOI 10.1016/j.niox.2014.07.004; [Anonymous], BIOMETEOROLOGY; [Anonymous], BIOMETEOROLOGY; [Anonymous], ACTIONS REDOX PROPER; [Anonymous], BIOL RHYTHM RES; [Anonymous], BIOMETEOROLOGY; [Anonymous], 2008, COMP ASPECTS CIRCADI; [Anonymous], 2014, J SYMPTOMS SIGNS; Backhaus C, 2008, NITRIC OXIDE-BIOL CH, V19, P237, DOI 10.1016/j.niox.2008.07.002; BALZER I, 1992, CHRONOBIOL INT, V9, P260, DOI 10.3109/07420529209064535; BALZER I, 1991, SCIENCE, V253, P795, DOI 10.1126/science.1876838; BALZER I, 1991, INT J BIOMETEOROL, V34, P231, DOI 10.1007/BF01041834; Balzer I., 2000, REDOX STATE CIRCADIA, V95, P119; Baudouin E, 2014, FRONT PLANT SCI, V4, DOI [10.1016/S0083-6729(05)72010-0, 10.3389/fpls.2013.00553]; BECK O, 1981, J NEUROCHEM, V36, P2013, DOI 10.1111/j.1471-4159.1981.tb10827.x; Blokhina O, 2009, PHYSIOL PLANTARUM, V138, P447, DOI DOI 10.1111/J.1399-3054.2009.01340.X20059731; Budu A, 2007, J PINEAL RES, V42, P261, DOI 10.1111/j.1600-079X.2006.00414.x; Burkhardt S, 2001, INT J BIOCHEM CELL B, V33, P775, DOI 10.1016/S1357-2725(01)00052-8; Byeon Y, 2015, J PINEAL RES, V59, P448, DOI 10.1111/jpi.12274; Byeon Y, 2015, J PINEAL RES, V58, P470, DOI 10.1111/jpi.12232; Byeon Y, 2015, J PINEAL RES, V58, P343, DOI 10.1111/jpi.12220; CAHILL GM, 1989, P NATL ACAD SCI USA, V86, P1098, DOI 10.1073/pnas.86.3.1098; Chinnadurai R. 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J	Hinners, J; Kremp, A; Hense, I				Hinners, Jana; Kremp, Anke; Hense, Inga			Evolution in temperature-dependent phytoplankton traits revealed from a sediment archive: do reaction norms tell the whole story?	PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES			English	Article						adaptation; global warming; phytoplankton; sediment archives; temperature-dependent traits	CLIMATE-CHANGE; MARINE DINOFLAGELLATE; SCRIPPSIELLA-HANGOEI; SIZE EVOLUTION; SOUTHERN-OCEAN; CYST FORMATION; GROWTH; DINOPHYCEAE; POPULATION; ENCYSTMENT	The high evolutionary potential of phytoplankton species allows them to rapidly adapt to global warming. Adaptations may occur in temperature-dependent traits, such as growth rate, cell size and life cycle processes. Using resurrection experiments with resting stages from living sediment archives, it is possible to investigate whether adaptation occurred. For this study, we revived resting cysts of the spring bloom dinoflagellate Apocalathium malmogiense from recent and 100-year-old sediment layers from the Gulf of Finland, and compared temperature-dependent traits of recent and historic strains along a temperature gradient. We detected no changes in growth rates and cell sizes but a significant difference between recent and historic strains regarding resting cyst formation. The encystment rate of recent strains was significantly lower compared with historic strains which we interpret as an indication of adaptation to higher and more rapidly increasing spring temperatures. Low encystment rates may allow for bloom formation even if the threshold temperature inducing a loss of actively growing cells through resting cyst formation is exceeded. Our findings reveal that phenotypic responses of phytoplankton to changing temperature conditions may include hidden traits such as life cycle processes and their regulation mechanisms. This study emphasizes the potential of living sediment archives to investigate plankton responses and adaptation to global warming.	[Hinners, Jana; Hense, Inga] Univ Hamburg, Inst Hydrobiol & Fisheries Sci, Ctr Earth Syst Res & Sustainabil, Grosse Elbstr 133, D-22767 Hamburg, Germany; [Kremp, Anke] Finnish Environm Inst SYKE, Ctr Marine Res, Erik Palmenin Aukio 1, Helsinki 00560, Finland	University of Hamburg; Finnish Environment Institute	Hinners, J (通讯作者)，Univ Hamburg, Inst Hydrobiol & Fisheries Sci, Ctr Earth Syst Res & Sustainabil, Grosse Elbstr 133, D-22767 Hamburg, Germany.	jana.hinners@uni-hamburg.de		Hinners, Jana/0000-0002-5145-2539; Kremp, Anke/0000-0001-9484-6899; Hense, Inga/0000-0001-7322-680X	Landesforschungsforderung Hamburg [LFF-OS 20-2014]; Academy of Finland [282061, 251564]; Walter and Andre de Nottbeck Foundation; Cluster of Excellence CliSAP (EXC177), University of Hamburg - German Science Foundation (DFG)	Landesforschungsforderung Hamburg; Academy of Finland(Research Council of Finland); Walter and Andre de Nottbeck Foundation; Cluster of Excellence CliSAP (EXC177), University of Hamburg - German Science Foundation (DFG)(German Research Foundation (DFG))	J.H. acknowledges the support of Landesforschungsforderung Hamburg LFF-OS 20-2014. Funding for A.K. was provided by the Academy of Finland grants 282061 and 251564 and the Walter and Andre de Nottbeck Foundation. I.H. was supported through the Cluster of Excellence CliSAP (EXC177), University of Hamburg, funded through the German Science Foundation (DFG).	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R. Soc. B-Biol. Sci.	OCT 11	2017	284	1864							20171888	10.1098/rspb.2017.1888	http://dx.doi.org/10.1098/rspb.2017.1888			8	Biology; Ecology; Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Life Sciences & Biomedicine - Other Topics; Environmental Sciences & Ecology; Evolutionary Biology	VK1VD	29021182	Green Published, Bronze			2025-03-11	WOS:000662166400012
J	Wang, N; Luo, ZH; Mertens, KN; McCarthy, FMG; Gu, L; Gu, HF				Wang, Na; Luo, Zhaohe; Mertens, Kenneth N.; McCarthy, Francine M. G.; Gu, Li; Gu, Haifeng			Cyst-motile stage relationship and molecular phylogeny of a new freshwater dinoflagellate <i>Gymnodinium plasticum</i> from Plastic Lake, Canada	PHYCOLOGICAL RESEARCH			English	Article						apical structure complex; cyst; Gymnodiniales sensu stricto; Gymnodinium fuscum	WESTERN KOREA MORPHOLOGY; NW MEDITERRANEAN SEA; SHIWHAENSE N. GEN.; SP-NOV DINOPHYCEAE; RIBOSOMAL DNA; COASTAL WATERS; COMB. NOV.; ALEXANDRIUM DINOPHYCEAE; SEQUENCE DATA; ULTRASTRUCTURE	The dinophyceaen genus Gymnodinium was established with the freshwater species G. fuscum as type. According to Thessen et al. (2012), there are 268 species, with the majority marine species. In recently published molecular phylogenies based on ribosomal DNA sequences, Gymnodinium is polyphyletic. Here, a new freshwater Gymnodinium species, G. plasticum, is described from Plastic Lake, Ontario, Canada. Two strains were established by incubating single cysts, and their morphology was examined with light microscopy and scanning electron microscopy. The cyst had a rounded epicyst and hypocyst with a wide cingulum and smooth surface. Vegetative cells were characterized by an elongated nucleus running vertically and a deep sulcal intrusion. The apical structure complex was horseshoe-shaped and consisted of two pronounced ridges with a deep internal groove, encircling 80% of the apex. Small subunit ribosomal DNA (SSU rDNA), large subunit ribosomal DNA (LSU rDNA) and internal transcribed spacer (ITS) sequences were obtained from cultured strains. Molecular phylogeny based on concatenated SSU, LSU and ITS sequences supports the monophyly of the Gymnodiniales sensu stricto clade but our results suggest that many Gymnodinium species might need reclassification. Gymnodinium plasticum is closest to Dissodinium pseudolunula in our phylogeny but distant from the type species G. fuscum, as are the other gymnodiniacean taxa.	[Wang, Na; Luo, Zhaohe; Gu, Li; Gu, Haifeng] State Ocean Adm, Inst Oceanog 3, Xiamen, Peoples R China; [Mertens, Kenneth N.] IFREMER, Stn Biol Marine, LER BO, Concarneau, France; [McCarthy, Francine M. G.] Brock Univ, Earth Sci, St Catharines, ON, Canada	Third Institute of Oceanography, Ministry of Natural Resources; Ifremer; Brock University	Gu, HF (通讯作者)，State Ocean Adm, Inst Oceanog 3, Xiamen, Peoples R China.	guhaifeng@tio.org.cn	Luo, Zhaohe/ITT-7163-2023; Mertens, Kenneth/AAO-9566-2020; LI, QI/KHA-7880-2024; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Gu, Haifeng/0000-0002-2350-9171; Luo, Zhaohe/0000-0001-8662-2414; Mertens, Kenneth/0000-0003-2005-9483	National Natural Science Foundation of China [41676117]; Bilateral International Cooperation Project of SOA [HC170301]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Bilateral International Cooperation Project of SOA	We thank the responsible editor and two anonymous reviewers for constructive suggestions that improved the manuscript greatly. This work was supported by National Natural Science Foundation of China (41676117) and Bilateral International Cooperation Project of SOA (HC170301). We thank AM Krueger, Brock University, who assisted with field sampling.	Adachi M, 1996, J PHYCOL, V32, P424, DOI 10.1111/j.0022-3646.1996.00424.x; Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; Allman G.J., 1855, QJ Microsc Sci, V3, P21; Attaran-Fariman G, 2007, PHYCOLOGIA, V46, P644, DOI 10.2216/07-05.1; Campbell P. 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OCT	2017	65	4					312	321		10.1111/pre.12190	http://dx.doi.org/10.1111/pre.12190			10	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	FI6IU		Green Published			2025-03-11	WOS:000412099200006
J	Uddandam, PR; Prasad, V; Rai, J				Uddandam, Prem Raj; Prasad, Vandana; Rai, Jyotsana			Dinoflagellate cyst distribution in sediments of western Bay of Bengal: Role of sea surface conditions	PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY			English	Article						Dinoflagellate cysts; Bay of Bengal; River discharge; Productivity; Upwelling	NORTHWESTERN INDIAN-OCEAN; ARABIAN SEA; PRODUCTIVITY CHARACTERISTICS; ENVIRONMENTAL-FACTORS; SEASONAL VARIABILITY; UPWELLING REGION; NORTHERN BAY; FRESH-WATER; TOKYO-BAY; SALINITY	Bay of Bengal is a shallow marine basin exposed to seasonal fluctuation in precipitation and run-off. Thus, salinity, temperature, nutrient and productivity vary along the latitudinal and onshore-offshore gradient in the Bay of Bengal. These parameters directly affect primary productivity, including that of dinoflagellate cysts. The spatial distribution of organic walled dinoflagellates cyst is studied in the 50 surface samples of eight transects from the western Bay of Bengal, to infer variation in the environmental conditions in the region. The cyst diversity consists of 40 taxa with an overall high dominance of protoperidinioid cysts over gonyalaucoides. Based on the study distinct onshore and offshore dinocyst assemblages are identified. The high productive coastal upwelling region is characterised by the dominance of gonyalaucoid dinocyst species Bitectatodinium spongium (Zonneveld 1997) Zonneveld and Jurkschat 1999 indicating its adaptability to the fluctuating salinity and high nutrient conditions. The outer shelf to middle slope regions of western Bay of Bengal is dominated by the protoperidinioid species. This is in contrast to the gonyalaucoid dinocyst assemblages of the outer shelf to middle slope regions in other oceans. Since protoperidinioids prefer high nutrient and reducing environmental conditions for growth and preservation, their presence suggest high nutrient availability due to the river discharge and low oxygen condition in the slope region in Bay of Bengal. Statistical analyses of the sea surface parameters and dinoflagellate cyst abundance data indicate that salinity and silicates as a major source of nutrient played a major role in the distribution of dinoflagellate cyst in the Bay of Bengal. (C) 2017 Elsevier B.V. All rights reserved.	[Uddandam, Prem Raj; Prasad, Vandana; Rai, Jyotsana] Birbal Sahni Inst Palaeosci, 53 Univ Rd, Lucknow 226007, Uttar Pradesh, India	Department of Science & Technology (India); Birbal Sahni Institute of Palaeobotany (BSIP)	Uddandam, PR (通讯作者)，Birbal Sahni Inst Palaeosci, 53 Univ Rd, Lucknow 226007, Uttar Pradesh, India.	premrajuddandam@gmail.com			MoES [MoES/SIBER/NIO(RN)/11]	MoES	We are thankful to Director, BSIP for providing necessary facilities to carry out the present study. This study is carried out as a part of MoES funded project entitled "High resolution paleoclimatic studies" No. MoES/SIBER/NIO(RN)/11. We are also thankful to Dr. Rajiv Nigam and Dr. Rajeev Saraswat for their support during the sampling collection. The present publication bears a permission no. 36/2016-17 from the Birbal Sahni Institute of Paleosciences.	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Paleoclimatol. Paleoecol.	OCT 1	2017	483				SI		31	48		10.1016/j.palaeo.2017.01.013	http://dx.doi.org/10.1016/j.palaeo.2017.01.013			18	Geography, Physical; Geosciences, Multidisciplinary; Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Physical Geography; Geology; Paleontology	FH9QR					2025-03-11	WOS:000411547300004
J	Triki, HZ; Laabir, M; Lafabrie, C; Malouche, D; Bancon-Montigny, C; Gonzalez, C; Deidun, A; Pringault, O; Daly-Yahia, OK				Triki, Habiba Zmerli; Laabir, Mohamed; Lafabrie, Celine; Malouche, Dhafer; Bancon-Montigny, Chrystelle; Gonzalez, Catherine; Deidun, Alan; Pringault, Olivier; Daly-Yahia, Ons Kefi			Do the levels of industrial pollutants influence the distribution and abundance of dinoflagellate cysts in the recently-deposited sediment of a Mediterranean coastal ecosystem?	SCIENCE OF THE TOTAL ENVIRONMENT			English	Article						Dinocyst assemblage; Mediterranean Bizerte Lagoon; Spatial distribution; Toxic/noxious species; Organic/inorganic contaminants; Interaction pollutants/cysts	POLYCYCLIC AROMATIC-HYDROCARBONS; RECENT MARINE-SEDIMENTS; SURFACE SEDIMENTS; BIZERTE LAGOON; RESTING CYSTS; ALEXANDRIUM-PSEUDOGONYAULAX; ENVIRONMENTAL-FACTORS; SPATIAL-DISTRIBUTION; GONYAULAX-EXCAVATA; BENTHIC CYSTS	We studied the relationships between sediment industrial pollutants concentrations, sediment characteristics and the dinoflagellate cyst abundance within a coastal lagoon by investigating a total of 55 sampling stations within the Bizerte lagoon, a highly anthropized Mediterranean ecosystem. The sediment of Bizerte lagoon is characterized by a high dinocyst abundance, reaching a maximum value of 2742 cysts.g(-1) of dry sediment. The investigated cyst diversity was characterized by the presence of 22 dominant dinocyst morphotypes belonging to 11 genera. Two dinoflagellate species dominated the assemblage: Alexandrium pseudogonyaulax and Protoperidinium claudicans, representing 29 to 89% and 5 to 38% of the total cyst abundance, respectively, depending on the station. Seven morphotypes belonging to potentially toxic species were detected, including Alexandrium minutum, A. pseudogonyaulax, Alexandrium catenella/tamarense species complex, Lingulodinium polyedrum, Gonyaulax cf. spinifera complex, Prorocentrum micans and Protoceratium reticulatum. Pearson correlation values showed a positive correlation (alpha = 0.05) between cyst abundance and both water content and fine silt sediment content. Clustering revealed that the highest abundance of cysts corresponds to stations presenting the higher amounts of heavy metals. The simultaneous autoregressive model (SAM) highlighted a significant correlation (alpha = 0.05) between cyst accumulation and two main factors: sediment water content and sediment content for several heavy metals, including Hg, Cd, Cu, Ni and Cr. These results suggest that the degree of heavy metal pollution could influence cyst accumulation patterns. (C) 2017 Elsevier B.V. All rights reserved.	[Triki, Habiba Zmerli; Daly-Yahia, Ons Kefi] Univ Carthage, INAT, UR Biol Marine FST EL Manar 1, IRESA, 43 Ave Charles Nicolle, Tunis 1082, Tunisia; [Laabir, Mohamed] Univ Montpellier, Lab Ecol Syst Marins Cotiers ECOSYM, CNRS, UM2,IRD,IFREMER,UM1,UMR 5119, Pl Eugene Bataillon, F-34095 Montpellier, France; [Lafabrie, Celine; Pringault, Olivier] Univ Montpellier, CNRS, UMR 9190, MARBEC IRD,Ifremer, Pl Eugene Bataillon,Case 093, F-34095 Montpellier 5, France; [Lafabrie, Celine; Pringault, Olivier] Univ Carthage, Fac Sci Bizerte, Zarzouna 7021, Tunisia; [Malouche, Dhafer] Ecole Super Stat & Analy Informat, Zarzouna, Tunisia; [Bancon-Montigny, Chrystelle] Univ Montpellier, CNRS, UMR 5569 HydroSci IRD, 163 Rue Auguste Broussonnet, F-34090 Montpellier, France; [Gonzalez, Catherine] LGEI, Ecole Mines Ales, 6 Ave Clavieres, F-30319 Ales, France; [Deidun, Alan] Univ Malte, Dept Geosci, Msida, Malta	Universite de Carthage; Universite de Montpellier; Centre National de la Recherche Scientifique (CNRS); Ifremer; Institut de Recherche pour le Developpement (IRD); Centre National de la Recherche Scientifique (CNRS); Ifremer; Universite de Montpellier; Universite de Carthage; Centre National de la Recherche Scientifique (CNRS); CNRS - National Institute for Earth Sciences & Astronomy (INSU); Universite de Montpellier; IMT - Institut Mines-Telecom; IMT Mines Ales	Triki, HZ (通讯作者)，Univ Carthage, INAT, UR Biol Marine FST EL Manar 1, IRESA, 43 Ave Charles Nicolle, Tunis 1082, Tunisia.	bibarouma@hotmail.fr	Malouche, Dhafer/HOF-7025-2023; Montigny, Chrystelle/ACN-3124-2022; GONZALEZ, Catherine/H-7105-2012; MONTIGNY, Chrystelle/H-1993-2013; Pringault, Olivier/A-7399-2008	Deidun, Alan/0000-0002-6919-5374; MONTIGNY, Chrystelle/0000-0003-0734-7130; Pringault, Olivier/0000-0003-2363-8376; Gonzalez, Catherine/0000-0002-2660-6559; Malouche, Dhafer/0000-0002-0494-7141	JEAI ECOBIZ (Jeune Equipe Associee, Ecologie de la lagune de Bizerte) program; LAGUNOTOX project; TOTAL Foundation; IRD (Institut Francais pour la Recherche et le Developpement)	JEAI ECOBIZ (Jeune Equipe Associee, Ecologie de la lagune de Bizerte) program; LAGUNOTOX project; TOTAL Foundation(Total SA); IRD (Institut Francais pour la Recherche et le Developpement)	This work benefitted from financial supports of the JEAI ECOBIZ (Jeune Equipe Associee, Ecologie de la lagune de Bizerte) program funded in turn by IRD (Institut Francais pour la Recherche et le Developpement), as well as from the LAGUNOTOX project funded by TOTAL Foundation.	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Total Environ.	OCT 1	2017	595						380	392		10.1016/j.scitotenv.2017.03.183	http://dx.doi.org/10.1016/j.scitotenv.2017.03.183			13	Environmental Sciences	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology	EV2AZ	28391143	Green Published			2025-03-11	WOS:000401556800038
J	Salgado, P; Figueroa, RI; Ramilo, I; Bravo, I				Salgado, Pablo; Figueroa, Rosa I.; Ramilo, Isabel; Bravo, Isabel			The life history of the toxic marine dinoflagellate <i>Protoceratium reticulatum</i> (Gonyaulacales) in culture	HARMFUL ALGAE			English	Article						Life history; Longitudinal biflagellation; Protoceratium reticulatum; Sexual cycle; Planozygote and germling division; Resting cyst	GYMNODINIUM-CATENATUM DINOPHYCEAE; SP-NOV DINOPHYCEAE; SEXUAL REPRODUCTION; LINGULODINIUM-POLYEDRUM; ALEXANDRIUM-TAMUTUM; YESSOTOXINS PROFILE; SURFACE SEDIMENTS; MATING-TYPE; CYCLE; CYST	Asexual and sexual life cycle events were studied in cultures of the toxic marine dinoflagellate Protoceratium reticulatum. Asexual division by desmoschisis was characterized morphologically and changes in DNA content were analyzed by flow cytometry. The results indicated that haploid cells with a C DNA content occurred only during the light period whereas a shift from a C to a 2C DNA content (indicative of S phase) took place only during darkness. The sexual life cycle was documented by examining the mating type as well as the morphology of the sexual stages and nuclei. Gamete fusion resulted in a planozygote with two longitudinal flagella, but longitudinally biflagellated cells arising from planozygote division were also observed, so one of the daughter cells retained two longitudinal flagella while the other daughter cell lacked them. Presumed planozygotes (identified by their longitudinally biflagellated form) followed two life-cycle routes: division and encystment (resting cyst formation). Both the division of longitudinally biflagellated cells and resting cyst formation are morphologically described herein. Resting cyst formation through sexual reproduction was observed in 6.1% of crosses and followed a complex heterothallic pattern. Clonal strains underwent sexuality (homothallism for planozygote formation and division) but without the production of resting cysts. Ornamental processes of resting cysts formed from the cyst wall under an outer balloon-shaped membrane and were fully developed in <1 h. Obligatory dormancy period was of 4 months. Excystment resulted in a large, rounded, pigmented, longitudinally biflagellated but motionless, thecate germling that divided by desmoschisis. Like the planozygote, the first division of the germling yielded one longitudinally biflagellated daughter cell and another without longitudinal flagella. The longitudinal biflagellation state of both sexual stages and of the first division products of these cells is discussed. (C) 2017 Elsevier B.V. All rights reserved.	[Salgado, Pablo] Inst Fomento Pesquero IFOP, Enrique Abello 0552,Casilla 101, Punta Arenas, Chile; [Salgado, Pablo; Figueroa, Rosa I.; Ramilo, Isabel; Bravo, Isabel] Ctr Oceanog Vigo, IEO, Subida Radio Faro 50, Vigo 36390, Spain	Instituto de Fomento Pesquero (Valparaiso); Spanish Institute of Oceanography	Salgado, P (通讯作者)，Inst Fomento Pesquero IFOP, Enrique Abello 0552,Casilla 101, Punta Arenas, Chile.	pablo.salgado@ifop.cl; rosa.figueroa@vi.ieo.es; isabel.ramilo@vi.ieo.es; isabel.bravo@vi.ieo.es	Salgado, Pablo/KMA-0636-2024; Bravo, Isabel/D-3147-2012; Figueroa, Rosa/M-7598-2015	Figueroa, Rosa/0000-0001-9944-7993; Bravo, Isabel/0000-0003-3764-745X	CCVIEO project; Spanish National Project CICAN [CGL2013-40671-R]; Subsecretaria de Pesca y Acuicultura (SUBPESCA) of the Ministerio de Economia, Fomento y Turismo; Instituto Espanol de Oceanografia (IEO)	CCVIEO project; Spanish National Project CICAN; Subsecretaria de Pesca y Acuicultura (SUBPESCA) of the Ministerio de Economia, Fomento y Turismo; Instituto Espanol de Oceanografia (IEO)	The authors thank Pilar Rial and Elena Fagin for technical support. Gemita Pizarro from Instituto de Fomento Pesquero (IFOP) for providing the P. reticulatum strains. Ines Pazos from CACTI, University of Vigo, for SEM microscopy. The present work was funded by the CCVIEO project and the Spanish National Project CICAN (CGL2013-40671-R). The Red Tide Monitoring Program of Southern Chile during which strains were isolated, was funded by the Subsecretaria de Pesca y Acuicultura (SUBPESCA) of the Ministerio de Economia, Fomento y Turismo and carried out by IFOP. This article will be part of the doctoral thesis of Pablo Salgado and is within the doctoral program "Marine Science, Technology and Management" (DO*MAR) of the University of Vigo. 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J	Ferraro, L; Rubino, F; Belmonte, M; Da Prato, S; Greco, M; Frontalini, F				Ferraro, L.; Rubino, F.; Belmonte, M.; Da Prato, S.; Greco, M.; Frontalini, F.			A multidisciplinary approach to study confined marine basins: the holobenthic and merobenthic assemblages in the Mar Piccolo of Taranto (Ionian Sea, Mediterranean)	MARINE BIODIVERSITY			English	Article						Holobenthos; Merobenthos; Foraminifera; Ostracods; Plankton resting stages; Confined marine areas; Mediterranean Sea	WALLED DINOFLAGELLATE CYSTS; BENTHIC FORAMINIFERAL FAUNAS; SOUTHERN ADRIATIC SEA; SURFACE SEDIMENTS; MARGINAL MARINE; HEAVY-METALS; MYTILUS-GALLOPROVINCIALIS; TAXONOMIC CLARIFICATION; ZOOPLANKTON COMPOSITION; ENVIRONMENTAL CONTROLS	Benthic foraminifera and ostracods, and resting stages (cysts) of plankton were analysed from surface sediment samples collected at 20 stations in the Mar Piccolo of Taranto (Ionian Sea, Mediterranean), with the aim to advance our knowledge on the biodiversity and ecological features of confined marine areas and to upgrade the autoecology of the species, and to have a more detailed and complete information to be applied as the baseline in future studies on environmental quality. In order to better assess the spatial distribution of the holobenthic and merobenthic species, we conceived a simple method of spatial analysis, based on all the identified taxa of foraminifera, ostracods and plankton cysts. Five groups were established on the basis of the number of sites per sub-basin where each taxon was registered, and this allowed us to recognise the preferential patterns of distribution for 150 species. The good correspondence between the results of the spatial analysis and those obtained from the analysis of the communities and the uni- and multivariate statistics showed a clear difference between the two sub-basins of the Mar Piccolo of Taranto.	[Ferraro, L.] CNR, Ist Ambiente Marino Costiero Calata Porta di Mass, I-80133 Naples, Italy; [Rubino, F.; Belmonte, M.] CNR, Ist Ambiente Marino Costiero, UOS Taranto, Via Roma 3, I-74123 Taranto, Italy; [Da Prato, S.] CNR, Ist Geosci & Georisorse, Via Moruzzi 1, I-56124 Pisa, Italy; [Greco, M.; Frontalini, F.] Univ Urbino Carlo Bo, Dipartimento Sci Pure & Applicate DiSPeA, I-61029 Urbino, Italy	Consiglio Nazionale delle Ricerche (CNR); L'Istituto per l'Ambiente Marino Costiero (IAMC-CNR); Consiglio Nazionale delle Ricerche (CNR); L'Istituto per l'Ambiente Marino Costiero (IAMC-CNR); Consiglio Nazionale delle Ricerche (CNR); Istituto di Geoscienze e Georisorse (IGG-CNR); University of Urbino	Rubino, F (通讯作者)，CNR, Ist Ambiente Marino Costiero, UOS Taranto, Via Roma 3, I-74123 Taranto, Italy.	rubino@iamc.cnr.it	Rubino, Fernando/GOP-0332-2022; Ferraro, Luciana/AAX-6983-2020; Belmonte, Marisol/AAG-9759-2019; Frontalini, Fabrizio/C-4819-2008; Greco, Mattia/HOF-9207-2023	Greco, Mattia/0000-0003-2416-6235; Rubino, Fernando/0000-0003-2552-2510; Ferraro, Luciana/0000-0002-6491-2274	CNR-Institute for Coastal Marine Environment of Taranto; Dipartimento di Scienze Pure e Applicate (DiSPeA); Universita degli Studi di Urbino "Carlo Bo"; CNR-Istituto di Geoscienze e Georisorse, Pisa, Italy	CNR-Institute for Coastal Marine Environment of Taranto; Dipartimento di Scienze Pure e Applicate (DiSPeA); Universita degli Studi di Urbino "Carlo Bo"; CNR-Istituto di Geoscienze e Georisorse, Pisa, Italy	The field and laboratory work was financially supported by the CNR-Institute for Coastal Marine Environment of Taranto, Dipartimento di Scienze Pure e Applicate (DiSPeA), Universita degli Studi di Urbino "Carlo Bo" and CNR-Istituto di Geoscienze e Georisorse, Pisa, Italy. Special thanks are owed to Mr. Cosimo Macripo for his technical assistance aboard the 'Aristocle.' The two anonymous reviewers contributed to improve the manuscript thanks to their very accurate comments.	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J	Aktan, Y; Keskin, Ç				Aktan, Yelda; Keskin, Cetin			Second Habitat Record of <i>Polykrikos hartmannii</i> W. Zimm. (Dinophyceae) in the South Aegean Sea, Eastern Mediterranean	TURKISH JOURNAL OF FISHERIES AND AQUATIC SCIENCES			English	Article						Dinoflagellates; Ichthyotoxicity; Eastern Mediterrannean Sea; Aquaculture	GULF-OF-CALIFORNIA; DINOFLAGELLATE RESTING CYSTS; HARMFUL ALGAL BLOOMS; RECENT SEDIMENTS; LA-PAZ; BAY; SHALLOW; MARINE; BAHIA; USA	Polykrikos hartmannii, a harmful and ichthyotoxic marine dinoflageallate, has been widely distributed in temperate and tropical waters. In this study, P. hartmannii, previously recorded from fossil's, is recorded for the first time in the South Aegean Sea, Eastern Mediterranean from living cells. This study provides information on the new distribution areas of the species in the south-eastern Aegean Sea.	[Aktan, Yelda; Keskin, Cetin] Istanbul Univ, Fisheries Fac, Ordu St 200, TR-34470 Istanbul, Turkey	Istanbul University	Aktan, Y (通讯作者)，Istanbul Univ, Fisheries Fac, Ordu St 200, TR-34470 Istanbul, Turkey.	yaktan@istanbul.edu.tr	AKTAN TURAN, Yelda/AAD-1812-2020; Keskin, Cetin/LHA-5342-2024	Aktan Turan, Yelda/0000-0001-7920-8979; Keskin, Cetin/0000-0002-2434-0355				Aktan Yelda, 2011, Journal of the Black Sea Mediterranean Environment, V17, P159; Aktan Y, 2011, ESTUAR COAST SHELF S, V91, P551, DOI 10.1016/j.ecss.2010.12.010; Badylak S, 2004, J PLANKTON RES, V26, P1229, DOI 10.1093/plankt/fbh114; Balkis N, 2016, PHYCOLOGIA, V55, P187, DOI 10.2216/15-93.1; Balkis Neslihan, 2004, Journal of the Black Sea Mediterranean Environment, V10, P123; Basterretxea G, 2007, MAR ECOL PROG SER, V352, P53, DOI 10.3354/meps07168; Baula IU, 2011, HARMFUL ALGAE, V11, P33, DOI 10.1016/j.hal.2011.07.002; Birincioglu SS, 2013, KAFKAS UNIV VET FAK, V19, P343, DOI 10.9775/kvfd.2012.7847; CHATTON EDOUARD, 1933, BULL SOC ZOOL FRANCE, V58, P251; D'Costa PM, 2008, ESTUAR COAST SHELF S, V77, P77, DOI 10.1016/j.ecss.2007.09.002; Escobar-Morales S, 2015, BOT MAR, V58, P9, DOI 10.1515/bot-2014-0049; Ferrante M., 2013, HARMFUL ALGAL BLOOMS, V2, P587, DOI DOI 10.4172/SCIENTIFICREPORTS.587; Fujii R, 2006, J PLANKTON RES, V28, P131, DOI 10.1093/plankt/fbi106; Garate-Lizarraga I, 2014, CICIMAR Oceanides, V29, P25; Garate-Lizarraga I., 2008, Harmful Algae News, V37, P6; Gárate-Lizárraga I, 2013, MAR POLLUT BULL, V67, P217, DOI 10.1016/j.marpolbul.2012.11.031; Giacobbe MG, 2007, HYDROBIOLOGIA, V580, P125, DOI 10.1007/s10750-006-0459-7; Gómez F, 2006, J BIOGEOGR, V33, P261, DOI 10.1111/j.1365-2699.2005.01373.x; Gómez F, 2003, BOT MAR, V46, P215, DOI 10.1515/BOT.2003.021; Guiry MD., 2017, AlgaeBase; Hall NS, 2008, ESTUAR COAST, V31, P402, DOI 10.1007/s12237-008-9035-x; Hernández-Becerril DU, 2007, J ENVIRON SCI HEAL A, V42, P1349, DOI 10.1080/10934520701480219; Hoppenrath M, 2007, J PHYCOL, V43, P366, DOI 10.1111/j.1529-8817.2007.00319.x; Hoppenrath M, 2010, EUR J PROTISTOL, V46, P29, DOI 10.1016/j.ejop.2009.08.003; HULBURT EM, 1957, BIOL BULL-US, V112, P196, DOI 10.2307/1539198; Koray T., 2001, J FISHERIES AQUATIC, V18, P1; Larsen J., 2004, OPERA BOT, V140, P117; Lee Joon-Baek, 1998, Journal of Fisheries Science and Technology, V1, P283; MATSUOKA K, 1986, J PLANKTON RES, V8, P811, DOI 10.1093/plankt/8.4.811; Mizushima Koichiro, 2007, Plankton & Benthos Research, V2, P163, DOI 10.3800/pbr.2.163; Moncheva S., 2015, ABUNDANCE BIOMASS PH; Morquecho L, 2003, BOT MAR, V46, P132, DOI 10.1515/BOT.2003.014; Nehring S, 1997, BOT MAR, V40, P307, DOI 10.1515/botm.1997.40.1-6.307; Okaichi T., 2003, RED TIDES, P7; Parsons T.R., 1984, A manual for chemical and biological methods in seawater analysis; Peña-Manjarrez JL, 2005, CONT SHELF RES, V25, P1375, DOI 10.1016/j.csr.2005.02.002; Pospelova V, 2004, REV PALAEOBOT PALYNO, V128, P7, DOI 10.1016/S0034-6667(03)00110-6; Ruiz GM, 1997, AM ZOOL, V37, P621; Shin HH, 2011, ESTUAR COAST, V34, P712, DOI 10.1007/s12237-011-9373-y; Shin HH, 2010, MAR POLLUT BULL, V60, P1243, DOI 10.1016/j.marpolbul.2010.03.019; Srivilai Dusit, 2012, Coastal Marine Science, V35, P11; Steidinger Karen A., 1995, P387; Tang YZ, 2013, J PHYCOL, V49, P1084, DOI 10.1111/jpy.12114; Utermohl H., 1958, MITT INT VER THEOR A, V9, P1, DOI DOI 10.1080/05384680.1958.11904091; Wang ZH, 2004, PHYCOL RES, V52, P396, DOI 10.1111/j.1440-1835.2004.tb00348.x; Yildirim O., 2004, E.U. Su Urunleri Dergisi, V21, P361; Yucel-Gier G, 2013, TURK J FISH AQUAT SC, V13, P737, DOI 10.4194/1303-2712-v13_4_19; ZIMMERMANN WALTER, 1930, ZEITSCHR BOT, V23, P419	48	4	4	3	19	CENTRAL FISHERIES RESEARCH INST	TRABZON	PO BOX 129, TRABZON, 61001, TURKEY	1303-2712			TURK J FISH AQUAT SC	Turk. J. Fish. Quat. Sci.	SEP	2017	17	5					1077	1081		10.4194/1303-2712-v17_5_25	http://dx.doi.org/10.4194/1303-2712-v17_5_25			5	Fisheries; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries; Marine & Freshwater Biology	FC3ZG		Bronze			2025-03-11	WOS:000406777500025
J	Hattenrath-Lehmann, TK; Gobler, CJ				Hattenrath-Lehmann, Theresa K.; Gobler, Christopher J.			Identification of unique microbiomes associated with harmful algal blooms caused by <i>Alexandrium fundyense</i> and <i>Dinophysis acuminata</i>	HARMFUL ALGAE			English	Article						Alexandrium; Bacteria; Dinophysis; HAB; Microbiome; Microbial; Sequencing	PSEUDO-NITZSCHIA-MULTISERIES; CYST FORMATION; TOXIC DINOFLAGELLATE; HIROSHIMA BAY; BACTERIAL COMMUNITIES; DIVERSITY; TAMARENSE; PARASITISM; GULF; ECOLOGY	Biotic interactions dominate plankton communities, yet the microbial consortia associated with harmful algal blooms (HABs) have not been well-described. Here, high-throughput amplicon sequencing of ribosomal genes was used to quantify the dynamics of bacterial (16S) and phytoplankton assemblages (18S) associated with blooms and cultures of two harmful algae, Alexandrium fundyense and Dinophysis acuminata. Experiments were performed to assess changes in natural bacterial and phytoplankton communities in response to the filtrate from cultures of these two harmful algae. Analysis of prokaryotic sequences from ecosystems, experiments, and cultures revealed statistically unique bacterial associations with each HAB. The dinoflagellate, Alexandrium, was strongly associated with multiple genera of Flavobacteria including Owenweeksia spp., Maribacter spp., and individuals within the NS5 marine group. While Flavobacteria also dominated Dinophysis-associated communities, the relative abundance of Alteromonadales bacteria strongly co-varied with Dinophysis abundances during blooms and Ulvibacter spp. (Flavobacteriales) and Arenicella spp. (Gammaproteobacteria) were associated with cells in culture. Eukaryotic sequencing facilitated the discovery of the endosymbiotic, parasitic dinoflagellate, Amoebophrya spp., that had not been regionally described but represented up to 17% of sequences during Alexandrium blooms. The presence of Alexandrium in field samples and in experiments significantly altered the relative abundances of bacterial and phytoplankton by both suppressing and promoting different taxa, while this effect was weaker in Dinophysis. Experiments specifically revealed a negative feedback loop during blooms whereby Alexandrium filtrate promoted the abundance of the parasite, Amoebophrya spp. Collectively, this study demonstrates that HABs formed by Alexandrium and Dinophysis harbor unique prokaryotic and eukaryotic microbiomes that are likely to, in turn, influence the dynamics of these HABs. (C) 2017 Elsevier B.V. All rights reserved.	[Hattenrath-Lehmann, Theresa K.; Gobler, Christopher J.] SUNY Stony Brook, Sch Marine & Atmospher Sci, Southampton, NY 11968 USA	State University of New York (SUNY) System; Stony Brook University	Gobler, CJ (通讯作者)，SUNY Stony Brook, Sch Marine & Atmospher Sci, Southampton, NY 11968 USA.	christopher.gobler@stonybrook.edu	Gobler, Christopher/JOZ-2924-2023		NOAA's Monitoring and Event Response to Harmful Algal Blooms (MERHAB) [NA11NOS4780027]; Chicago Community Trust; Rauch Foundation	NOAA's Monitoring and Event Response to Harmful Algal Blooms (MERHAB); Chicago Community Trust; Rauch Foundation	We would like to thank Jennifer Jankowiak and Tony Walters for assistance with R code and QIIME troubleshooting, respectively. 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Zhuang YY, 2015, HARMFUL ALGAE, V42, P60, DOI 10.1016/j.hal.2014.12.006	98	43	45	3	83	ELSEVIER SCIENCE BV	AMSTERDAM	PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS	1568-9883	1878-1470		HARMFUL ALGAE	Harmful Algae	SEP	2017	68						17	30		10.1016/j.hal.2017.07.003	http://dx.doi.org/10.1016/j.hal.2017.07.003			14	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	FJ7SE	28962978	Green Published			2025-03-11	WOS:000412958300002
J	Shin, HH; Li, Z; Kim, ES; Park, JW; Lim, WA				Shin, Hyeon Ho; Li, Zhun; Kim, Eun Song; Park, Jong -Woo; Lim, Weol Ae			Which species, <i>Alexandrium catenella</i> (Group I) or <i>A-pacificum</i> (Group IV), is really responsible for past paralytic shellfish poisoning outbreaks in Jinhae-Masan Bay, Korea?	HARMFUL ALGAE			English	Article						Paralytic shellfish poisoning; Alexandrium cyst; Alexandrium catenella (Group I); Alexandrium pacificum (Group IV); Large subunit ribosomal sequence; Korea	EAST CHINA SEA; COCHLODINIUM-POLYKRIKOIDES MARGALEF; RESTING CYSTS; TAMARENSE DINOPHYCEAE; COMPLEX DINOPHYCEAE; TOXIN COMPOSITION; VEGETATIVE CELLS; COASTAL WATERS; BALLAST WATER; SEDIMENT TRAP	Paralytic shellfish poisoning (PSP) caused the deaths of four people in coastal area of Korea, mainly Jinhae-Masan Bay and adjacent areas, in April 1986 and in 1996. The PSP outbreaks were caused by the consumption of mussels, Mytilus edulis. The organism that caused PSP was identified, from morphological data only, as Alexandrium tamarense which is recently renamed as A. catenella, however recent studies have shown that the morphological diagnostic characteristics used to identify Alexandrium species have uncertainties and molecular tools and other criteria should be considered as well. The organism that caused past PSP outbreaks and incidents in Korea therefore need to be carefully reconsidered. The aim of this study was to re-evaluate the species really responsible for past outbreaks of PSP in Jinhae-Masan Bay, Korea. The temporal production and fluxes of the resting cysts of Alexandrium species were investigated for one year (from March 2011 to February 2012) using a sediment trap, and the morphology and phylogeny of vegetative cells germinated from the resting cysts were analysed. The production of Alexandrium species peaked in August and November, when temporal discrepancies were found in the water temperature (22.4 and 22.7 degrees C in August, 19.1 and 19.6 degrees C in November) and salinity (29.5 and 26.1 psu in August, 30.5 and 31.8 psu in November). The morphological data revealed that Alexandrium species germinated from resting cysts collected in August have a ventral pore on the 1' plate, whereas the 1' plate in Alexandrium species germinated from resting cysts collected in November lacks a ventral pore. Molecular phylogenetic data for the vegetative cells from the germination experiments allowed the August and November peaks to be assigned to Alexandrium catenella (Group I) and A. pacificum (Group IV), respectively. This indicates that the production of resting cysts of A. catenella can be enhanced by relatively high water temperature. This result is not consistent with those of previous studies that A. catenella responsible for PSP outbreaks was found at relatively low water temperature. In addition, large subunit ribosomal sequences data revealed that A. pacificum isolates from Korea were closely related to those from Australia, Japan and New Zealand where the PSP toxicity of shellfish and blooms occurred in the 1990s, indicating that the introduction of toxic dinoflagellates were related to ballast water from bulk-cargo shipping. Based on these results, we concluded that past PSP outbreaks in Jinhae-Masan Bay of Korea could have been caused by A. pacificum rather than by A. catenella. (C) 2017 Elsevier B.V. All rights reserved.	[Shin, Hyeon Ho; Li, Zhun; Kim, Eun Song] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea; [Park, Jong -Woo; Lim, Weol Ae] Natl Inst Fisheries Sci, Busan 619705, South Korea	Korea Institute of Ocean Science & Technology (KIOST); National Institute of Fisheries Science	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea.; Lim, WA (通讯作者)，Natl Inst Fisheries Sci, Busan 619705, South Korea.	shh961121@kiost.ac.kr; limwa@korea.kr	LI, ZHUN/GLT-3478-2022	Shin, Hyeon Ho/0000-0002-9711-6717; LI, ZHUN/0000-0001-8961-9966	KIMST; NIFS [R2017047]; KIOST [PE99513, PE99515]	KIMST(Korea Institute of Marine Science & Technology Promotion (KIMST)); NIFS; KIOST	This work was supported by grants from KIMST, NIFS (R2017047) and KIOST (PE99513 and PE99515). 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J	Kim, ES; Li, Z; Oh, SJ; Yoon, YH; Shin, HH				Kim, Eun Song; Li, Zhun; Oh, Seok Jin; Yoon, Yang Ho; Shin, Hyeon Ho			Morphological Identification of <i>Alexandrium</i> Species (Dinophyceae) from Jinhae-Masan Bay, Korea	OCEAN SCIENCE JOURNAL			English	Article						Alexandrium; morphological identification; connecting pore; ventral pore; Jinhae-Masan Bay	DINOFLAGELLATE GENUS ALEXANDRIUM; OSTENFELDII DINOPHYCEAE; TAMARENSE DINOPHYCEAE; CAUSATIVE ORGANISM; RESTING CYSTS; TOXICITY; CATENELLA; COAST; BIOGEOGRAPHY; VARIABILITY	Outbreaks of paralytic shellfish poisoning (PSP) and dense blooms caused by Alexandrium species in Jinhae-Masan Bay, Korea have been nearly annual events for many years. However, excluding some Alexandrium species responsible for PSP, there are no critical reports on the morphology of Alexandrium species in this bay. To identify the Alexandrium species based on detailed morphological features, vegetative cells collected water samples and established by the incubation of resting cysts isolated from sediment trap samples were analyzed. Four species of Alexandrium were identified: Alexandrium affine, A. fundyense, A. catenella, and A. insuetum. Morphological features of these species were basically consistent with those outlined in previous studies. However, the ventral pore and the connecting pore on the sulcal plate, which have been accepted as diagnostic characteristics for the identification of A. fundyense and A. catenella, need to be reevaluated, indicating that useful morphological features for identifying these two species should be recommended to avoid confusion in the classification of species in genus Alexandrium.	[Kim, Eun Song; Li, Zhun; Shin, Hyeon Ho] KIOST, South Sea Res Inst, Lib Marine Samples, Geoje 53201, South Korea; [Oh, Seok Jin] Pukyong Natl Univ, Lab Coastal Environm & Ecol, Busan 48513, South Korea; [Yoon, Yang Ho] Chonnam Natl Univ, Sch Marine Technol, Coll Fisheries & Ocean Sci, Yeosu 59626, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Pukyong National University; Chonnam National University	Shin, HH (通讯作者)，KIOST, South Sea Res Inst, Lib Marine Samples, Geoje 53201, South Korea.	shh961121@kiost.ac.kr	LI, ZHUN/GLT-3478-2022	LI, ZHUN/0000-0001-8961-9966; Shin, Hyeon Ho/0000-0002-9711-6717	Korea Institute of Marine Science and Technology and KIOST project [PE99513, PE99515]	Korea Institute of Marine Science and Technology and KIOST project	This research was supported by a grant from Korea Institute of Marine Science and Technology and KIOST project (PE99513 and PE99515).	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J.	SEP	2017	52	3					427	437		10.1007/s12601-017-0031-6	http://dx.doi.org/10.1007/s12601-017-0031-6			11	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	FH9AM					2025-03-11	WOS:000411498300010
J	Li, Z; Shin, HH				Li, Z.; Shin, H. H.			RESTING CYSTS OF POTENTIALLY HARMFUL DINOFLAGELLATES IN KOREAN COASTAL AREA	PHYCOLOGIA			English	Meeting Abstract									[Li, Z.; Shin, H. H.] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Ansan, South Korea	Korea Institute of Ocean Science & Technology (KIOST)		lizhun@kiost.ac.kr; shh961121@kiost.ac.kr							0	0	0	0	0	INT PHYCOLOGICAL SOC	LAWRENCE	NEW BUSINESS OFFICE, PO BOX 1897, LAWRENCE, KS 66044-8897 USA	0031-8884			PHYCOLOGIA	Phycologia	AUG	2017	56	4		S		245	117	117						1	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	FJ6TX					2025-03-11	WOS:000412892000246
J	Anglès, S; Reñé, A; Garcés, E; Lugliè, A; Sechi, N; Camp, J; Satta, CT				Angles, Silvia; Rene, Albert; Garces, Esther; Luglie, Antonella; Sechi, Nicola; Camp, Jordi; Satta, Cecilia Teodora			MORPHOLOGICAL AND MOLECULAR CHARACTERIZATION OF <i>BYSMATRUM SUBSALSUM</i> (DINOPHYCEAE) FROM THE WESTERN MEDITERRANEAN SEA REVEALS THE EXISTENCE OF CRYPTIC SPECIES	JOURNAL OF PHYCOLOGY			English	Article						5.8S-ITS; benthic; cyst; dinoflagellate; LSU; rRNA; SSU; taxonomy; transitional ecosystem	DINOFLAGELLATE CYST ASSEMBLAGES; BENTHIC DINOFLAGELLATE; PERIDINIUM-GREGARIUM; NOV DINOPHYCEAE; 1ST REPORT; SCRIPPSIELLA; THORACOSPHAERACEAE; AUSTRALIA; ECOLOGY	Bysmatrum subsalsum is a cosmopolitan dinoflagellate species that inhabits marine and transitional habitats. Despite its wide distribution, information on the morphological variability, phylogeny and ecology of B. subsalsum is scarce. In this study, we provide morphological and molecular data on B. subsalsum strains and wild cells from different locations in the Mediterranean Basin. The dynamics of cell abundances and the associated environmental conditions during a field bloom are also described. Genetic sequences of B. subsalsum obtained in this study showed large intraspecific differences, clustering in two well-differentiated clades. Despite a certain degree of variation with respect to cell size, apical pore complex (APC) morphology and size, and cingulum displacement, cells from the two clades showed similar morphological traits. These findings indicated the occurrence of cryptic species. Comparisons of the morphology of our B. subsalsum specimens with the few descriptions available in the literature revealed larger than previously known intraspecific morphological variability. Phylogenetic trees inferred from the concatenated SSU, 5.8S-ITS, and LSU rRNA and the individual 5.8S-ITS regions suggested the inclusion of Bysmatrum in the Peridiniales and a close phylogenetic relationship with Peridinium sensu stricto. However, the low statistical support prevented the assignment of Bysmatrum to a particular family of Peridiniales. Ecological data obtained from a bloom in La Pletera salt marshes (Catalan Coast, Spain) suggested the species reaches high cell abundances at water temperatures >20 degrees C and salinity levels >30. Our results add new information regarding the morphology, phylogeny, and ecology of B. subsalsum.	[Angles, Silvia] IMEDEA UIB CSIC, Inst Mediterrani Estudis Avancats, Dept Ecol & Recursos Marins, Miquel Marques 21, Esporles 07190, Spain; [Rene, Albert; Garces, Esther; Camp, Jordi] CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, Passeig Maritim Barceloneta 37-49, E-08003 Barcelona, Spain; [Luglie, Antonella; Sechi, Nicola; Satta, Cecilia Teodora] Univ Sassari, Dipartimento Architettura Design & Urbanist, Via Piandanna 4, I-090064 Sassari, Italy	Consejo Superior de Investigaciones Cientificas (CSIC); ATTITUS Educacao; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Centro Mediterraneo de Investigaciones Marinas y Ambientales (CMIMA); CSIC - Instituto de Ciencias del Mar (ICM); University of Sassari	Satta, CT (通讯作者)，Univ Sassari, Dipartimento Architettura Design & Urbanist, Via Piandanna 4, I-090064 Sassari, Italy.	ctsatta@uniss.it	Satta, Cecilia Teodora/AAF-6417-2020; Anglès, Silvia/B-9469-2011; Luglie, Antonella/M-4321-2015; Garces, Esther/C-5701-2011; Rene, Albert/D-4560-2012	Luglie, Antonella/0000-0001-6382-4208; Garces, Esther/0000-0002-2712-501X; Rene, Albert/0000-0002-0488-3539; SATTA, Cecilia Teodora/0000-0003-0130-9432; Camp, Jordi/0000-0002-5202-9783	Marie Sklodowska Curie International Outgoing Fellowship within the 7th European Community Framework Programme (Project CONPLANK) [PIOF-GA-2011-302562]; Regione Sardegna; Zoumgest project; project DEVOTES; 7th European Community Framework Programme, "The Ocean for Tomorrow" [GA-308392]; Institut d'Ecologia Aquatica - UDG [LIFE 13 NAT/ES/001001]	Marie Sklodowska Curie International Outgoing Fellowship within the 7th European Community Framework Programme (Project CONPLANK); Regione Sardegna(Regione Sardegna); Zoumgest project; project DEVOTES; 7th European Community Framework Programme, "The Ocean for Tomorrow"; Institut d'Ecologia Aquatica - UDG	This research was supported by a Marie Sklodowska Curie International Outgoing Fellowship within the 7th European Community Framework Programme (Project CONPLANK, PIOF-GA-2011-302562). The Regione Sardegna funded Research Project "Master and Back" financed C. T. Satta's work. The Zoumgest project provided the financial support required for the Corru S'Ittiri Lagoon sampling. Financial support was also provided by the project DEVOTES, funded by the 7th European Community Framework Programme, "The Ocean for Tomorrow" (GA-308392). The authors thank X. Quintana (Institut d'Ecologia Aquatica - UDG) for providing physical-chemical data on PL (Project LIFE 13 NAT/ES/001001), J.M. Fortuno and the Servei de Microscopia Electronica (ICM-CSIC) and S. Marceddu (ISPA-CNR) for their assistance in the SEM observations, and V. Balague (ICM-CSIC) for technical assistance during the molecular analyses.	[Anonymous], 1958, Mitt. Int. Ver. Theor. Angew. Limnol., DOI DOI 10.1080/05384680.1958.11904091; Biecheler B., 1952, Bull. Biol. Fr. 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J	Lu, XX; Wang, ZH; Guo, X; Gu, YG; Liang, WB; Liu, L				Lu, Xinxin; Wang, Zhaohui; Guo, Xin; Gu, Yangguang; Liang, Weibiao; Liu, Lei			Impacts of metal contamination and eutrophication on dinoflagellate cyst assemblages along the Guangdong coast of southern China	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate cysts; Metals; Biogenic elements; Sediments; South China Sea; Redundancy analysis	PEARL RIVER ESTUARY; INDUCED OXIDATIVE STRESS; HEAVY-METAL; SURFACE SEDIMENTS; MARINE-PHYTOPLANKTON; SPATIAL-DISTRIBUTION; ZHELIN BAY; INDUSTRIAL-POLLUTION; BIOGENIC ELEMENTS; YELLOW SEA	Fifty-one surface sediment samples were collected from eleven sea areas along the Guangdong coast in southern China. Biogenic elements, metals and dinoflagellate cysts were analyzed. Twenty-one cyst taxa in 12 genera were identified. The cyst concentrations ranged between 14 and 250 cysts/g, with an average of 69 cysts/g. The low cyst production was caused by coarse sediments, high sedimentation rates, and high anthropogenic disturbances. Biogenic elements were comparable with those reported. However, the metal concentrations were far lower than the sediment quality guidelines. Both biogenic elements and metals were higher in the Mid Coast and lower in the Western Coast. Eutrophication slightly enhanced the productivity of autotrophic dinocysts, and cysts of Scrippsiella indicated eutrophication. Cd had inhibitory effects on cyst production. Alexandrium and Diplopsalis cysts were sensitive to metal contamination; however, Gyrodiniwn, Pheopolykrikos, and Lingulodinium cysts had high resistance to metal contamination.	[Lu, Xinxin; Wang, Zhaohui; Guo, Xin; Gu, Yangguang; Liang, Weibiao; Liu, Lei] Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Guangdong, Peoples R China	Jinan University	Wang, ZH (通讯作者)，Jinan Univ, Inst Hydrobiol, Guangzhou 510632, Guangdong, Peoples R China.	twzh@jnu.edu.cn	Gu, Yang-Guang/C-8275-2009	Gu, Yang-Guang/0000-0003-2314-0463	National Natural Science Foundation of China [41476132, 41276154, U1301235]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was supported by the National Natural Science Foundation of China (Nos. 41476132, 41276154, and U1301235).	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Pollut. Bull.	JUL 15	2017	120	1-2					239	249		10.1016/j.marpolbul.2017.05.032	http://dx.doi.org/10.1016/j.marpolbul.2017.05.032			11	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	FD4YY	28526199				2025-03-11	WOS:000407539300038
J	Yamamoto, K; Oikawa, H				Yamamoto, Keigo; Oikawa, Hiroshi			Temporal changes and differences in the toxin contents and the profiles between arc shell and Japanese cockle contaminated with paralytic shellfish toxin in Osaka Bay, eastern Seto Inland Sea, Japan	NIPPON SUISAN GAKKAISHI			Chinese	Article							ALEXANDRIUM-TAMARENSE; RESTING CYSTS; TRANSFORMATION; DINOPHYCEAE	The causative dinoflagellate blooms of paralytic shellfish toxins (PSTs) and changes in the toxin contents and the profiles in both arc shell Scapharca broughtonii and Japanese cockle Fulvia mutica in Osaka Bay for three years from 2013 to 2015 were investigated. During the investigation, the toxic dinoflagellate Alexandrium tamarense and A. catenella occurred in Osaka Bay. A. tamarense was the most important causative species in contamination of bivalves with PSTs. Contamination and detoxification in arc shell with PSTs were slower than those in Japanese cockle and slight amounts of PSTs remained in the arc shell throughout the year. On the other hand, PSTs in Japanese cockle were not detected after the end of bloom of A. tamarense. The dominant toxins of arc shell were GTX2 and GTX3 and relative ratio of STX in the arc shell increased with decontamination of toxins. In contrast, the dominant toxins in Japanese cockle were C1 and C2. In conclusion, the rate of GTX1 and GTX4 increased during the bloom of A. tamarense in both species. It was suggested that toxins in Japanese cockle were rapidly excreted without any in vivo conversions of toxins from the causative dinoflagellates.	[Yamamoto, Keigo] Res Inst Environm Agr & Fisheries, Marine Fisheries Res Ctr, Osaka, Osaka 5990311, Japan; [Oikawa, Hiroshi] Japan Fisheries Res & Educ Agcy, Natl Res Inst Fisheries Sci, Yokohama, Kanagawa 2368648, Japan	Japan Fisheries Research & Education Agency (FRA)	Yamamoto, K (通讯作者)，Res Inst Environm Agr & Fisheries, Marine Fisheries Res Ctr, Osaka, Osaka 5990311, Japan.	YamamotoK@o-suishi.zaqrs.jp						Fukuyo Y., 2002, PICES Science Report, V23, P7; Imai Ichiro, 2006, Plankton & Benthos Research, V1, P71; John U, 2014, PROTIST, V165, P779, DOI 10.1016/j.protis.2014.10.001; Kaga S, 2006, NIPPON SUISAN GAKK, V72, P1068, DOI 10.2331/suisan.72.1068; KVITEK RG, 1991, MAR ECOL PROG SER, V69, P47, DOI 10.3354/meps069047; Nagai S, 2016, HARMFUL ALGAE, V51, P97, DOI 10.1016/j.hal.2015.10.014; OSHIMA Y, 1992, TOXICON, V30, P1539, DOI 10.1016/0041-0101(92)90025-Z; OSHIMA Y, 1990, TOXIC MARINE PHYTOPLANKTON, P391; OSHIMA Y, 1995, J AOAC INT, V78, P528; Persson A, 2006, HARMFUL ALGAE, V5, P678, DOI 10.1016/j.hal.2006.02.004; Sato S, 2000, BIOORG MED CHEM LETT, V10, P1787, DOI 10.1016/S0960-894X(00)00332-2; Sato S, 2014, J AOAC INT, V97, P339, DOI 10.5740/jaoacint.SGESato; SHIMIZU Y, 1981, SCIENCE, V212, P547, DOI 10.1126/science.7209548; Twarog B.M., 1974, PROC 2 INT CORAL REE, P505; Uwe J, 2014, TAXON, V63, P932; Yamamoto K, 2010, NIPPON SUISAN GAKK, V76, P877, DOI 10.2331/suisan.76.877	16	6	6	1	4	JAPANESE SOC FISHERIES SCIENCE	TOKYO	C/O TOKYO UNIV FISHERIES, KONAN 4, MINATO, TOKYO, 108-8477, JAPAN	0021-5392	1349-998X		NIPPON SUISAN GAKK	Nippon Suisan Gakkaishi	JUL	2017	83	4					589	598		10.2331/suisan.17-00006	http://dx.doi.org/10.2331/suisan.17-00006			10	Fisheries	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries	FI3ZK		gold			2025-03-11	WOS:000411908600005
J	Guallar, C; Bacher, C; Chapelle, A				Guallar, Carles; Bacher, Cedric; Chapelle, Annie			Global and local factors driving the phenology of <i>Alexandriurn minutum</i> (Halim) blooms and its toxicity	HARMFUL ALGAE			English	Article						Alexandrium minutum; PSP toxicity; HAB; Bloom phenology; Threshold analysis; Monitoring long time-series	HARMFUL ALGAL BLOOMS; NITZSCHIA SPP. BLOOMS; COASTAL WATERS; CLIMATE-CHANGE; TOXIN CONTENT; ENVIRONMENTAL-FACTORS; ENGLISH-CHANNEL; CYST FORMATION; OCEAN COLOR; CORK HARBOR	The dinoflagellate Alexandrium minutum is a toxic bloom-forming species distributed worldwide. The mechanisms driving and promoting the species blooms and their toxicity are studied and presented here. Most previously published work focuses on local and/or short-term scales. In this study, a broad temporal and spatial approach is addressed using time series covering several sites over several years and combining environmental variables and A. minutum abundances from the French English Channel - Atlantic coasts. Data were explored by means of phenology and threshold analysis. The A. minutum bloom characteristics are defined. Only one bloom per year is measured and it may reach more than a million of cells L-1. Bloom period extends from April to October and the bloom length ranges from two weeks to six months. In the ecosystems studied, water temperature and river flow, as regional and local factors respectively, are the main environmental drivers influencing the magnitude, growth rate and length of the blooms. Bloom toxicity is linked to the bloom maximum abundance and river flow. This work provides new knowledge for further managing tools for A. minutum blooms in the ecosystems studied. (C) 2017 Elsevier B.V. All rights reserved.	[Guallar, Carles; Chapelle, Annie] IFREMER, DYNECO PELAGOS, BP 70, F-29280 Plouzane, France; [Bacher, Cedric] IFREMER, DYNECO, BP 70, F-29280 Plouzane, France; [Guallar, Carles] Univ Barcelona, Fac Biol, Dept Biol Evolut Ecol & Ciencies Ambientals, Av Diagonal 643,5th Floor, E-08028 Barcelona, Spain	Ifremer; Ifremer; University of Barcelona	Guallar, C (通讯作者)，IFREMER, DYNECO PELAGOS, BP 70, F-29280 Plouzane, France.; Guallar, C (通讯作者)，Univ Barcelona, Fac Biol, Dept Biol Evolut Ecol & Ciencies Ambientals, Av Diagonal 643,5th Floor, E-08028 Barcelona, Spain.	carlesguallar@gmail.com; Cedric.Bacher@ifremer.fr; Annie.Chapelle@ifremer.fr		Bacher, Cedric/0000-0001-6090-4667; Guallar, Carles/0000-0001-7240-5873	Agence de l'Eau Loire Bretagne (AELB); AELB; IFREMER	Agence de l'Eau Loire Bretagne (AELB); AELB; IFREMER	This work was supported by the Agence de l'Eau Loire Bretagne (AELB) in the frame of the project PHYTORISK. Caries Guallar was funded by AELB and IFREMER.	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J	Berezina, NA; Gubelit, YI; Polyak, YM; Sharov, AN; Kudryavtseva, VA; Lubimtsev, VA; Petukhov, VA; Shigaeva, TD				Berezina, Nadezhda A.; Gubelit, Yulia I.; Polyak, Yulia M.; Sharov, Andrey N.; Kudryavtseva, Valentina A.; Lubimtsev, Vasily A.; Petukhov, Vasily A.; Shigaeva, Tatyana D.			An integrated approach to the assessment of the eastern Gulf of Finland health: A case study of coastal habitats	JOURNAL OF MARINE SYSTEMS			English	Article						Environmental assessment; Indicators; Toxic pollution; Eutrophication; Coastal zone; Neva estuary	AMPHIPOD MONOPOREIA-AFFINIS; CLADOPHORA-GLOMERATA; BALTIC SEA; CYANOBACTERIAL BLOOMS; DINOFLAGELLATE CYSTS; ALGAL MATS; COMMUNITY; MACROALGAE; SEDIMENTS; MACROZOOBENTHOS	Eutrophication and chemical pollution are typical threats to the ecosystem of the Gulf of Finland. This paper aims to make a comprehensive assessment of the environmental status of coastal habitats in the easternmost Gulf of Finland (Neva River estuary) by using different physical, chemical and biotic variables to find cost-effective indicators for further monitoring. During summers of 2014 and 2015 we measured water salinity, phosphorus (eutrophication marker), biomass of harmful filamentous macroalgae (coastline hypoxia inductor), sediment hazardous substances (trace metals, polycyclic aromatic hydrocarbons) and other concomitant characters at 12 sites in the gulf. Also, we analyzed responses of the phytoplankton and benthic organisms, including metal tolerant and hydrocarbon-oxidizing bacteria, meio- and macrofauna, to these factors. We compared the indicative sensitivity and efficiency of several well-known biotic indices and methods, including a Saprobity system (basing on phytoplankton), Raffaelli and Mason index (meiobenthos), and two macrobenthic derived indices (Goodnight-Whitley Index and Benthic Quality Index). Also, we applied a new index - the embryo malformation frequency in benthic amphipods. To estimate the level of bottom hypoxia induced by the macroalgae blooms, we measured the algal cover and thickness of the algal mats. To verify our assessment, we tested correlations between all used variables. Biotic communities of these areas are subjected to high phosphorus and macroalgae blooms, toxic pollution, water salinity and other factors. We concluded that environmental state of coastal habitats at several southern sites (in Koporskaya Bay and near the developing port Bronka) and near port Primorsk in the north was bad, while the state of the rest of sites was moderate or good. The integrated approach for the assessment may be recommended for monitoring programs as an important tool for studying human-mediated and other effects on brackishwater coastal environments. (C) 2016 Elsevier B.V. All rights reserved.	[Berezina, Nadezhda A.; Gubelit, Yulia I.; Petukhov, Vasily A.] Russian Acad Sci, Zool Inst, Univ Skaya 1, St Petersburg 199034, Russia; [Polyak, Yulia M.; Sharov, Andrey N.; Kudryavtseva, Valentina A.; Lubimtsev, Vasily A.; Shigaeva, Tatyana D.] RAS, Sci Res Ctr Ecol Safety, Korpusnaya St 18, St Petersburg 197110, Russia	Russian Academy of Sciences; Zoological Institute of the Russian Academy of Sciences; Russian Academy of Sciences; St. Petersburg Federal Research Center of the Russian Academy of Sciences	Berezina, NA (通讯作者)，Russian Acad Sci, Zool Inst, Univ Skaya 1, St Petersburg 199034, Russia.	nadezhda.berezina@zin.ru	Kudryavtseva, Valentina/AAF-1374-2021; Petukhov, Vasily/U-4310-2017; Berezina, Nadezhda/R-1968-2016; Shigaeva, Tatiana/Q-5075-2016; Gubelit, Yulia/U-4874-2017; polyak, yulia/P-8505-2016; Sharov, Andrey/K-4222-2013	Gubelit, Yulia/0000-0002-7334-7844; Berezina, Nadezhda/0000-0003-3057-5596; shigaeva, tatiana/0000-0002-7548-6434; polyak, yulia/0000-0002-9490-2392; Sharov, Andrey/0000-0001-7581-2538	Russian Foundation for Basic Research [14-04-00207, 14-04-91721 BONUS_a]	Russian Foundation for Basic Research(Russian Foundation for Basic Research (RFBR)Spanish Government)	Authors cordially thank Lyudmila Umnova (ZIN RAS) for measurement of phosphates and two anonymous reviewers for valuable comments. 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JUL	2017	171				SI		159	171		10.1016/j.jmarsys.2016.08.013	http://dx.doi.org/10.1016/j.jmarsys.2016.08.013			13	Geosciences, Multidisciplinary; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Geology; Marine & Freshwater Biology; Oceanography	EY5BJ					2025-03-11	WOS:000403991900018
J	Rezanka, T; Lukavsky, J; Nedbalová, L; Sigler, K				Rezanka, Tomas; Lukavsky, Jaromir; Nedbalova, Linda; Sigler, Karel			Lipidomic profile in three species of dinoflagellates (<i>Amphidinium carterae, Cystodinium</i> sp., and <i>Peridinium aciculiferum</i>) containing very long chain polyunsaturated fatty acids	PHYTOCHEMISTRY			English	Article						Dinoflagellates; Amphidinium carterae; Cystodinium sp.; Peridinium aciculiferum; Gymnodiniaceae; Phytodiniaceae; Peridiniaceae; Lipidomic analysis; Very long chain polyunsaturated fatty acids; Triacylglycerols; Phospholipids; Phosphatidylcholine	ELECTROSPRAY-IONIZATION; MASS-SPECTROMETRY; PHOSPHATIDYLCHOLINE; TRIACYLGLYCEROLS; IDENTIFICATION; REGIOISOMERS; MICROALGAE; DIACYLGLYCEROLS; DINOPHYCEAE; BIOMARKERS	This study describes the identification of very long chain polyunsaturated fatty acids (VLCPUFAs) in three strains of dinoflagellates (Amphidinium carterae, Cystodinium sp., and Peridinium aciculiferum). The strains were cultivated and their lipidomic profiles were obtained by high resolution mass spectrometry with the aid of positive and negative electrospray ionization (ESI) mode by Orbitrap apparatus. Hydrophilic interaction liquid chromatography (HILIC/ESI) was used to separate major lipid classes of the three genera of dinoflagellates by neutral loss scan showing the ion [M + H-28:8](+), where 28:8 was octacosaoctaenoic acid, and by precursor ion scanning of ions at m/z 407, which was an ion corresponding to the structure of acyl of 28:8 acid (C27H39COO-). Based on these analyzes, it was found that out of more than a dozen lipid classes present in the total lipids, only two classes of neutral lipids, i.e. major triacylglycerols and minor diacylglycerols contain VLCPUFAs. In polar lipids, VLCPUFAs were identified only in phosphatidic acid (PA) and phosphatidyl choline (PC) or in their lyso-forms (LPA and LPC). Further analysis of individual lipid classes by reversed-phase high-performance liquid chromatography (RPHPLC) showed the presence of triacylglycerols (TAGs) containing VLCPUFAs, i.e. molecular species of the sn-28:7/28:8/28:8, sn-26:7/28:7/28:8, or sn-26:7/28:8/28:8 types. These TAGs are the longest and most unsaturated TAGs isolated from a natural source that have yet been synthesized. In the case of PA and PC, tandem MS identified sn-28:8/16:0-PA and sn-28:8/16:0-PC and the corresponding lyso-forms (28:8-LPC and 28:8-LPA). All these results indicate that TAGs containing VLCPUFAs are biosynthesized in dinoflagellates in the same manner as in higher eukaryotic organisms, which means that the PA, after conversion to DAG, serves as a precursor in the biosynthesis of other phospholipids, e.g. PC, and, after further acylation, also of TAG. (C) 2017 Elsevier Ltd. All rights reserved.	[Rezanka, Tomas; Sigler, Karel] Inst Microbiol, Videnska 1083, Prague 14220, Czech Republic; [Lukavsky, Jaromir] Acad Sci Czech Republ, Inst Bot, Biorefinery Res Ctr Competence, Dukelska 135, CS-37982 Trebon, Czech Republic; [Nedbalova, Linda] Charles Univ Prague, Fac Sci, Dept Ecol, Vinicna 7, CR-12844 Prague, Czech Republic	Czech Academy of Sciences; Institute of Microbiology of the Czech Academy of Sciences; Czech Academy of Sciences; Institute of Botany of the Czech Academy of Sciences; Charles University Prague	Rezanka, T (通讯作者)，Inst Microbiol, Videnska 1083, Prague 14220, Czech Republic.	rezanka@biomed.cas.cz	Lukavský, Jaromír/H-1607-2014; Rezanka, Tomas/A-8399-2008; Nedbalova, Linda/D-2792-2009	Nedbalova, Linda/0000-0003-1800-714X; lukavsky, jaromir/0000-0002-8939-4725	Czech Science Foundation (GACR) [P503 17-00027S];  [RVO61388971];  [RVO67985939]	Czech Science Foundation (GACR)(Grant Agency of the Czech Republic); ; 	The research was supported by Czech Science Foundation (GACR) project P503 17-00027S and by Institutional Research Concepts RVO61388971 and RVO67985939.	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J	Shin, HH; Li, Z; Yoon, YH; Oh, SJ; Lim, WA				Shin, Hyeon Ho; Li, Zhun; Yoon, Yang Ho; Oh, Seok Jin; Lim, Wol-Ae			Formation and germination of temporary cysts of <i>Cochlodinium polykrikoides</i> Margalef (Dinophyceae) and their ecological role in dense blooms	HARMFUL ALGAE			English	Article						Cochlodinium polykrikoides; Chain forming temporary cyst; Formation; Germination; Germling	HARMFUL ALGAL BLOOMS; ALEXANDRIUM-TAYLORI DINOPHYCEAE; RED TIDE; GONYAULAX-TAMARENSIS; COASTAL WATERS; NEW-YORK; DINOFLAGELLATE; GROWTH; PHYTOPLANKTON; GYMNODINIALES	While the initiation and development of dense bloom of Cochlodinium polykrikoides have been shown to be related to some environmental factors, little is known about the ecological role of the formation and germination of temporary cysts, nor of their significance for the rapid expansion of dense regional-scale blooms. This study examined the factors affecting the formation and germination of temporary cysts of C. polykrikoides, and provides details about the germination process. In the laboratory experiments, C. polykrikoides produced the chain-forming temporary cysts that are immobile and surrounded by a hyaline membrane. The encystment experiment indicated that darkness induces the formation of chain forming temporary cysts, consistent with field observation of morphology and fluxes of temporary cysts. Germination occurred twice from a single four-celled temporary cysts within 24 h after exposure to light, and the germlings appeared as two-celled chain-forming vegetative cells. The germination behavior of temporary cysts of C. polykrikoides differs from that of other dinoflagellates, and this may be a survival strategy for the maintenance of population size during dense blooms. (C) 2017 Elsevier B.V. All rights reserved.	[Shin, Hyeon Ho; Li, Zhun] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea; [Yoon, Yang Ho] Chonnam Natl Univ, Fac Marine Technol, Mipyeongro 386, Yeosu 550749, South Korea; [Oh, Seok Jin] Pukyong Natl Univ, Busan 608737, South Korea; [Lim, Wol-Ae] Natl Inst Fisheries Sci, Busan 619705, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Chonnam National University; Pukyong National University; National Institute of Fisheries Science	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 656830, South Korea.	shh961121@kiost.ac.kr	LI, ZHUN/GLT-3478-2022	LI, ZHUN/0000-0001-8961-9966; Shin, Hyeon Ho/0000-0002-9711-6717	KIOST [PE99515]; NIFS [R2017047]; KIMST	KIOST; NIFS; KIMST(Korea Institute of Marine Science & Technology Promotion (KIMST))	This work was supported by grants from KIMST, KIOST (PE99515) and NIFS (R2017047).[CG]	ANDERSON DM, 1980, J PHYCOL, V16, P166; ANDERSON DM, 1978, J PHYCOL, V14, P224, DOI 10.1111/j.1529-8817.1978.tb02452.x; Anderson JT, 2003, MAR ECOL PROG SER, V246, P95, DOI 10.3354/meps246095; Bravo I, 2010, DEEP-SEA RES PT II, V57, P166, DOI 10.1016/j.dsr2.2009.09.003; Dale B., 1983, P69; Garcés E, 2002, J PLANKTON RES, V24, P681, DOI 10.1093/plankt/24.7.681; Garces E, 1998, J PHYCOL, V34, P880, DOI 10.1046/j.1529-8817.1998.340880.x; Garcés E, 1999, J PLANKTON RES, V21, P2373, DOI 10.1093/plankt/21.12.2373; Garces E., 2002, LIFEHAB, P46; Gobler CJ, 2012, HARMFUL ALGAE, V17, P64, DOI 10.1016/j.hal.2012.03.001; Kim CH, 2002, PHYCOLOGIA, V41, P667, DOI 10.2216/i0031-8884-41-6-667.1; Kim DI, 2004, J PLANKTON RES, V26, P61, DOI 10.1093/plankt/fbh001; Lee CK, 2013, HARMFUL ALGAE, V30, pS3, DOI 10.1016/j.hal.2013.10.002; Lee YS, 2006, MAR POLLUT BULL, V52, P1249, DOI 10.1016/j.marpolbul.2006.02.024; Li Z, 2015, J PHYCOL, V51, P204, DOI 10.1111/jpy.12252; MANSINGH A, 1971, CAN ENTOMOL, V103, P983, DOI 10.4039/Ent103983-7; Matsuoka K, 2008, HARMFUL ALGAE, V7, P261, DOI 10.1016/j.hal.2007.12.002; Matsuzaki K, 2003, MATER SCI FORUM, V426-4, P563, DOI 10.4028/www.scientific.net/MSF.426-432.563; Nagasaki K, 2000, NIPPON SUISAN GAKK, V66, P666; Nehring S., 1993, P INT COAST C INT DI, P454; NFRDI, 2012, Annual Report of NFRDI on Red Tide of Korea; Oh S J, 2010, J KOREAN FISHERY AQU, V43, P715; Oh Seok Jin, 2006, Algae, V21, P311; Olli K, 2004, MAR BIOL, V145, P1, DOI 10.1007/s00227-004-1295-9; Omura T, 2012, MARINE PHYTOPLANKTON; Onitsuka G, 2010, HARMFUL ALGAE, V9, P390, DOI 10.1016/j.hal.2010.01.006; Park JG, 2001, PHYCOLOGIA, V40, P292, DOI 10.2216/i0031-8884-40-3-292.1; Rintala JM, 2007, MAR BIOL, V152, P57, DOI 10.1007/s00227-007-0652-x; Schmitter R.E., 1979, P123; Smayda TJ, 1997, LIMNOL OCEANOGR, V42, P1137, DOI 10.4319/lo.1997.42.5_part_2.1137; Tang YZ, 2012, HARMFUL ALGAE, V20, P71, DOI 10.1016/j.hal.2012.08.001; Tang YZ, 2010, P NATL ACAD SCI USA, V107, P20756, DOI 10.1073/pnas.1009566107; Tang YZ, 2010, MAR ECOL PROG SER, V406, P19, DOI 10.3354/meps08537; Tomas CR, 2008, HARMFUL ALGAE, V7, P308, DOI 10.1016/j.hal.2007.12.005	34	18	20	1	28	ELSEVIER SCIENCE BV	AMSTERDAM	PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS	1568-9883	1878-1470		HARMFUL ALGAE	Harmful Algae	JUN	2017	66						57	64		10.1016/j.hal.2017.05.002	http://dx.doi.org/10.1016/j.hal.2017.05.002			8	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	EY9FE	28602254				2025-03-11	WOS:000404303700007
J	Hoppenrath, M				Hoppenrath, Mona			Dinoflagellate taxonomy - a review and proposal of a revised classification	MARINE BIODIVERSITY			English	Review						Dinophytes; Dinozoa; Morphology; Phylogeny; Systematics	SAND-DWELLING DINOFLAGELLATE; CYST-THECA RELATIONSHIP; GEN. NOV DINOPHYCEAE; EARLY EVOLUTIONARY HISTORY; WESTERN KOREA MORPHOLOGY; SHIWHAENSE N. GEN.; MOLECULAR PHYLOGENY; RIBOSOMAL DNA; EMENDED DESCRIPTION; HETEROTROPHIC DINOFLAGELLATE	The knowledge about morphology-based taxonomy and classification as well as molecular phylogenetic hypotheses and character evolution of dinokaryotic dinoflagellates was summarized. Recommendations for future taxonomic work and character evaluations were given. A classification scheme based on nameless ranked systematics for dinoflagellate levels above genus was proposed. Higher ranks were based on the relative number of alveolae (Polyalveolate and Oligoalveolate) and their arrangement. Polyalveolate had alveolae arranged in series or not. Oligoalveolate had alveolae arranged in different tabulation patterns (Symmetricomorpha, Asymmetricomorpha, Sagittale). A group of taxa with unclear tabulation type (in-between peridinioid and gonyaulacoid) was separated and named Mesomorpha. A higher rank for taxa with a sagittal suture splitting only the hyposome in two lateral halves (extra tabulation pattern) was created, Pre-sagittale. The classification intended to highlight the unresolved relationships of higher ranks. Furthermore, the difficulties to define characters suitable for general higher rank circumscription should become visible. The study pinpointed what needs to be done to improve the current dinoflagellate taxonomy.	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Biodivers.	JUN	2017	47	2					381	403		10.1007/s12526-016-0471-8	http://dx.doi.org/10.1007/s12526-016-0471-8			23	Biodiversity Conservation; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Biodiversity & Conservation; Marine & Freshwater Biology	EX2MW					2025-03-11	WOS:000403061500017
J	Simo-Matchim, AG; Gosselin, M; Poulin, M; Ardyna, M; Lessard, S				Simo-Matchim, Armelle-Galine; Gosselin, Michel; Poulin, Michel; Ardyna, Mathieu; Lessard, Sylvie			Summer and fall distribution of phytoplankton in relation to environmental variables in Labrador fjords, with special emphasis on <i>Phaeocystis pouchetii</i>	MARINE ECOLOGY PROGRESS SERIES			English	Article						Taxonomic composition; Protists; Phytoplankton; Diatoms; Phaeocystis; Seasonal variability; Northeastern Canada; Labrador; Fjords	OCEAN SEA-ICE; COMMUNITY STRUCTURE; SPRING BLOOM; FOOD-WEB; SEASONAL-VARIATIONS; NORTHERN NORWAY; MARINE PLANKTON; COASTAL WATERS; CHLOROPHYLL-A; DYNAMICS	Protist (> 2 mu m) taxonomic composition was investigated for the first time in 4 Labrador fjords (Nachvak, Saglek, Okak and Anaktalak) during summers 2007 and 2013, early fall 2010 and late fall 2009. Protist composition was significantly different from one season to another. Significant spatial differences in protist composition were found only during summer 2013. During summer 2007, the community was characterized by diatoms and a mixed assemblage of flagellates. In summer 2013, flagellates largely dominated the community, and an intense Phaeocystis pouchetii bloom was observed in Nachvak Fjord (18 x 10(6) cells l(-1)). In autumn, the community was dominated by unidentified flagellates, prymnesiophytes and diatoms, in various proportions from early to late fall. From a summer situation characterized by stronger stratification, higher incident irradiance and depleted nutrients in surface waters, it evolved to an autumn situation characterized by decreasing air temperature and irradiance associated with an environmental forcing (e.g. weather) allowing cooling and greater vertical mixing of the water column. Combining our observations with those from the literature, we suggest the following annual succession in the Labrador fjord phytoplankton community: (winter) dinoflagellates and small flagellated cells-(spring) Fragilariopsis spp., Chaetoceros spp., Thalassiosira spp. and Phaeo cystis pouchetii-(summer) Chaetoceros spp., P. pouchetii and Chrysochromulina spp.-(fall) Gymnodinium/Gyrodinium spp., Chrysochromulina spp. and other flagellates. Overall, the protist richness was 2 times higher in fall than in summer, the highest richness being observed in early fall, with 201 taxonomic entries, 72 genera and 131 species identified.	[Simo-Matchim, Armelle-Galine; Gosselin, Michel; Lessard, Sylvie] Univ Quebec, Inst Sci Mer Rimouski, 310 Allee Ursulines, Rimouski, PQ G5L 3A1, Canada; [Poulin, Michel] Musee Canadien Nat, Rech & Collect, CP 3443,Succursale D, Ottawa, ON K1P 6P4, Canada; [Ardyna, Mathieu] Univ Laval, Takuvik Joint Int Lab, Quebec City, PQ, Canada; [Ardyna, Mathieu] CNRS, Paris, France; [Ardyna, Mathieu] Univ Laval, UMI3376, Dept Biol & Quebec Ocean, Quebec City, PQ G1V 0A6, Canada; [Ardyna, Mathieu] UPMC Univ Paris 06, Sorbonne Univ, INSU CNRS, Lab Oceanog Villefranche, 181 Chemin Lazaret, F-06230 Villefranche Sur Mer, France	University of Quebec; Laval University; Centre National de la Recherche Scientifique (CNRS); Laval University; Centre National de la Recherche Scientifique (CNRS); CNRS - National Institute for Earth Sciences & Astronomy (INSU); Sorbonne Universite	Simo-Matchim, AG (通讯作者)，Univ Quebec, Inst Sci Mer Rimouski, 310 Allee Ursulines, Rimouski, PQ G5L 3A1, Canada.	armellesimo@yahoo.fr	Gosselin, Michel/B-4477-2014; Ardyna, Mathieu/N-2027-2018	Gosselin, Michel/0000-0002-1044-0793; Ardyna, Mathieu/0000-0002-4703-6655	ArcticNet (Network of Centres of Excellence of Canada); Natural Sciences and Engineering Research Council of Canada (NSERC); Fonds de recherche du Quebec - Nature et technologies (FRQNT) through Quebec-Ocean; Canadian Museum of Nature; Institut des sciences de la mer de Rimouski (ISMER); Fondation de l'Universite du Quebec a Rimouski	ArcticNet (Network of Centres of Excellence of Canada); Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)); Fonds de recherche du Quebec - Nature et technologies (FRQNT) through Quebec-Ocean; Canadian Museum of Nature; Institut des sciences de la mer de Rimouski (ISMER); Fondation de l'Universite du Quebec a Rimouski	This project was supported by grants from ArcticNet (Network of Centres of Excellence of Canada) and the Natural Sciences and Engineering Research Council of Canada (NSERC). Partial funding was provided by the Fonds de recherche du Quebec - Nature et technologies (FRQNT) through Quebec-Ocean and by the Canadian Museum of Nature. A.G.S.M. received postgraduate scholar ships from the Institut des sciences de la mer de Rimouski (ISMER) and the Fondation de l'Universite du Quebec a Rimouski, and stipends from ArcticNet and Quebec-Ocean. We are thankful to the officers and crew of the CCGS 'Amundsen' for their invaluable support during expeditions. We are especially indebted to M. Blais, M. Simard, J. Ferland, J. Gara and T. Brown for sample collection and technical support; Y. Gratton and P. Guillot for providing and processing CTD data; J. E. Tremblay and J. Gagnon for providing the nutrient data; B. Else for data on CO<INF>2</INF> partial pressure; C. Jose for help during cell identification and enumeration; P. Archambault and M. Cusson for advice on statistical analysis; and 3 anonymous reviewers for their constructive comments. This is a contribution to the research programmes of ArcticNet, ISMER and QubecOcean.	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Ecol.-Prog. Ser.	MAY 31	2017	572						19	42		10.3354/meps12125	http://dx.doi.org/10.3354/meps12125			24	Ecology; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Oceanography	EX7RO		Bronze			2025-03-11	WOS:000403446100002
J	Beleneva, IA; Skriptsova, AV; Svetashev, VI				Beleneva, I. A.; Skriptsova, A. V.; Svetashev, V. I.			Characterization of Biofilm-Forming Marine Bacteria and Their Effect on Attachment and Germination of Algal Spores	MICROBIOLOGY			English	Article						bacterial biofilms; antifouling activity; algal spores	ANTIFOULING ACTIVITY; MICROBIAL BIOFILMS; SP NOV.; ULVA; INHIBITION; SETTLEMENT; ZOOSPORES; IDENTIFICATION; SURFACE; MEMBER	In this work, 37 bacterial strains isolated from biofouling of marine organisms and from the Museum of Heterotrophic Bacteria of the National Scientific Center of Marine Biology were studied. The strains were identified based on their phenotypic characteristics and on the fatty acid composition of their cell wall lipids. Members of the genus Pseudoalteromonas prevailed both in associated microflora of two dinoflagellate clones and in the biofilms from marine hydrobionts. Associated microflora included also members of the CFB cluster, Bacillus, Sulfitobacter, Acinetobacter, Shewanella, and Psychrobacter. A considerable portion of strains (48.6%) exhibited antimicrobial activity. Antifouling activity against algal spores was studied using single-species bacterial biofilms and the spores of Ulva lactuca. Undaria pinnatifida, the algae most common in the Sea of Japan. Strong inhibitory effect on attachment of Ulva and Undaria spores was observed for 75 and 51% of the strains, respectively. Attached spores were, however, less sensitive to the inhibitory action of biofilms. Species specificity of algal response to bacteria was shown, with a strain having different effect on the spores of different algal species. Biotechnologically promising strains were determined, which exhibited high activity against the spores of macroalgae and could probably be used as producers of antifouling substances and as components of antifouling coatings. No relation was found between antifouling activity of bacteria and the source of their isolation. Our results indicate wide occurrence of bacteria with antifouling activity among associated microflora of marine hydrobionts and demonstrate the extent of complexity and diversity of relations between bacterial biofilms and algal spores.	[Beleneva, I. A.; Skriptsova, A. V.; Svetashev, V. I.] Russian Acad Sci, Far Eastern Branch, Natl Sci Ctr Marine Biol, Vladivostok, Russia	Russian Academy of Sciences; National Scientific Center of Marine Biology, Far East Branch of the Russian Academy of Sciences	Beleneva, IA (通讯作者)，Russian Acad Sci, Far Eastern Branch, Natl Sci Ctr Marine Biol, Vladivostok, Russia.	beleneva.vl@mail.ru	Svetashev, Vasily/K-3614-2016; Beleneva, Irina/AAR-8091-2021; Skriptsova, Anna/S-7365-2016	Skriptsova, Anna/0000-0001-5943-4522	Far Eastern Branch, Russian Academy of Sciences [15-I-6-059, A16-116101110096-3]	Far Eastern Branch, Russian Academy of Sciences(Russian Academy of Sciences)	This work was partly supported by the Far Eastern Branch, Russian Academy of Sciences (grant no. 15-I-6-059 and grant with registration no. A16-116101110096-3).	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J	Lundholm, N; Ribeiro, S; Godhe, A; Nielsen, LR; Ellegaard, M				Lundholm, Nina; Ribeiro, Sofia; Godhe, Anna; Nielsen, Lene Rostgaard; Ellegaard, Marianne			Exploring the impact of multidecadal environmental changes on the population genetic structure of a marine primary producer	ECOLOGY AND EVOLUTION			English	Article						dinoflagellate; environmental change; microsatellites; phytoplankton resting stage; population genetic structure; sediment core	DIATOM DITYLUM-BRIGHTWELLII; DINOFLAGELLATE ALEXANDRIUM-TAMARENSE; NITZSCHIA-PUNGENS BACILLARIOPHYCEAE; PLANKTONIC DIATOM; PSEUDO-NITZSCHIA; COASTAL WATERS; SPRING-BLOOM; KOLJO-FJORD; NORTH-SEA; MICROSATELLITE MARKERS	Many marine protists form resting stages that can remain viable in coastal sediments for several decades. Their long-term survival offers the possibility to explore the impact of changes in environmental conditions on population dynamics over multidecadal time scales. Resting stages of the phototrophic dinoflagellate Pentapharsodinium dalei were isolated and germinated from five layers in dated sediment cores from Koljo fjord, Sweden, spanning ca. 1910-2006. This fjord has, during the last century, experienced environmental fluctuations linked to hydrographic variability mainly driven by the North Atlantic Oscillation. Population genetic analyses based on six microsatellite markers revealed high genetic diversity and suggested that samples belonged to two clusters of subpopulations that have persisted for nearly a century. We observed sub-population shifts coinciding with changes in hydrographic conditions. The large degree of genetic diversity and the potential for both fluctuation and recovery over longer time scales documented here, may help to explain the long-term success of aquatic protists that form resting stages.	[Lundholm, Nina] Univ Copenhagen, Nat Hist Museum Denmark, Solvgade 83, DK-1307 Copenhagen K, Denmark; [Ribeiro, Sofia] Geol Survey Denmark & Greenland GEUS, Glaciol & Climate Dept, Copenhagen K, Denmark; [Godhe, Anna] Univ Gothenburg, Dept Marine Sci, Gothenburg, Sweden; [Nielsen, Lene Rostgaard] Univ Copenhagen, Dept Geosci & Nat Resource Management, Frederiksberg, Denmark; [Ellegaard, Marianne] Univ Copenhagen, Dept Plant & Environm Sci, Frederiksberg, Denmark	University of Copenhagen; Geological Survey Of Denmark & Greenland; University of Gothenburg; University of Copenhagen; University of Copenhagen	Lundholm, N (通讯作者)，Univ Copenhagen, Nat Hist Museum Denmark, Solvgade 83, DK-1307 Copenhagen K, Denmark.	nlundholm@snm.ku.dk	Ribeiro, Sofia/AAZ-2782-2021; Lundholm, Nina/AAY-6249-2020; Ribeiro, Sofia/G-9213-2018; Nielsen, Lene/E-6769-2015; Ellegaard, Marianne/H-6748-2014; Lundholm, Nina/A-4856-2013	Ribeiro, Sofia/0000-0003-0672-9161; Nielsen, Lene/0000-0002-7214-8691; Ellegaard, Marianne/0000-0002-6032-3376; 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Evol.	MAY	2017	7	9					3132	3142		10.1002/ece3.2906	http://dx.doi.org/10.1002/ece3.2906			11	Ecology; Evolutionary Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Evolutionary Biology	EW5LZ	28480012	Green Published, gold			2025-03-11	WOS:000402548900025
J	Lee, B; Park, MG				Lee, Bora; Park, Myung Gil			Different life cycle strategies of the dinoflagellates <i>Fragilidium duplocampanaeforme</i> and its prey <i>Dinophysis acuminata</i> may explain their different susceptibilities to the infection by the parasite <i>Parvilucifera infectans</i>	HARMFUL ALGAE			English	Article						Dinoflagellate; Defense mechanism; Parasite; Cyst formation; Food web dynamics	CILIATE MESODINIUM-RUBRUM; GYMNODINIUM-CATENATUM; CYST FORMATION; MARINE; TEMPERATURE; SPECIFICITY; DARKNESS; GROWTH	Some marine dinoflagellates form ecdysal cyst (=temporary cysts) as part of their life cycle or under unfavorable growth conditions. Whether the dinoflagellates form ecdysal cysts or not may influence susceptibility to parasitism. In this study, parasite prevalence relative to inoculum size of the parasitoid Parvilucifera infectans zoospores for two dinoflagellate hosts (i.e., Fragilidium duplocampanaeforme and Dinophysis acuminate), which have different life cycle strategies, was examined. Further, susceptibility of cysts to parasitism, encystment signal, duration of encystments, and effects of induced encystment on diel periodicity, using ecdysal cyst-forming F. duplocampanaeforme were explored. The percent hosts infected by P. infectans plotted as a function of inoculum size showed a sharp increase to a maximum in D. acuminata, but a gradual linear rise in F. duplocampanaeforme: while the parasite prevalence in D. acuminata increased to a maximum of 78.8 (+/- 2.4%) by a zoospore:host ratio of 20:1, it in F duplocampanaeforme only reached 8.9 (+/- 0.3%), even at a zoospore:host ratio of 120:1. In F duplocampanaeforme, infections were observed only in the vegetative cells and not observed in ecdysal cysts. When exposed to live, frozen, and sonicated zoospores and zoospore filtrate, F duplocampanaeforme formed ecdysal cysts only when exposed to live zoospores, suggesting that temporary cyst formation in the dinoflagellate resulted from direct contact with zoospores. When the Parvilucifera zoospores attacked and struggled to penetrate F duplocampanaeforme through its flagellar pore, the Fragilidium cell shed all thecal plates, forming a 'thecal cloud layer', in which the zoospores were caught and immobilized and thus could not penetrate anymore. The duration (35 +/- 1.8 h) of ecdysal cysts cysts (i.e., without addition of zoospores), thereby resulting in delayed growth as well as influencing the pattern of diel periodicity. The results from this study suggest that in addition to the classical predator prey interaction and allelopathic interaction, parasitism and its accompanying defense can make the food web dynamics much more complicated than previously thought. (C) 2017 Elsevier B.V. All rights reserved.	[Lee, Bora; Park, Myung Gil] Chonnam Natl Univ, Dept Oceanog, LOHABE, Gwangju 61186, South Korea	Chonnam National University	Park, MG (通讯作者)，Chonnam Natl Univ, Dept Oceanog, LOHABE, Gwangju 61186, South Korea.	mpark@chonnam.ac.kr			National Research Foundation of Korea [NRF-2016R1A6A1A03012647]; KIMST/MOF	National Research Foundation of Korea(National Research Foundation of Korea); KIMST/MOF(Korea Institute of Marine Science & Technology Promotion (KIMST)Ministry of Oceans & Fisheries (MOF), Republic of Korea)	The authors would like to thank D. Wayne Coats for valuable comments during the work. This work was supported by research grant funded by the National Research Foundation of Korea (NRF-2016R1A6A1A03012647) and a program entitled "Management of marine organisms causing ecological disturbance and harmful effects" funded by KIMST/MOF.[CG]	Alacid E, 2016, FRONT MICROBIOL, V7, DOI 10.3389/fmicb.2016.00769; Amorim A, 2013, MICROPALEAEONTOLOGIC, P223; ANDERSON DM, 1987, LIMNOL OCEANOGR, V32, P340, DOI 10.4319/lo.1987.32.2.0340; ANDERSON DM, 1985, J PHYCOL, V21, P200; ANDERSON DM, 1985, J EXP MAR BIOL ECOL, V86, P1, DOI 10.1016/0022-0981(85)90039-5; BRAVO I, 1994, J PLANKTON RES, V16, P513, DOI 10.1093/plankt/16.5.513; Bravo Isabel, 2014, Microorganisms, V2, P11; Chambouvet A, 2011, PROTIST, V162, P637, DOI 10.1016/j.protis.2010.12.001; DOUCETTE GJ, 1989, J PHYCOL, V25, P721, DOI 10.1111/j.0022-3646.1989.00721.x; Figueroa RI, 2006, J PHYCOL, V42, P67, DOI 10.1111/j.1529-8817.2006.00181.x; Garcés E, 2013, PROTIST, V164, P245, DOI 10.1016/j.protis.2012.11.004; GUILLARD RR, 1962, CAN J MICROBIOL, V8, P229, DOI 10.1139/m62-029; Guillard RRL., 1975, CULTURE MARINE INVER, P29, DOI [10.1007/978-1-4615-8714-93, DOI 10.1007/978-1-4615-8714-93, 10.1007/978-1-4615-8714-9_3]; Gustafson DE, 2000, NATURE, V405, P1049, DOI 10.1038/35016570; Johnson MD, 2005, AQUAT MICROB ECOL, V39, P303, DOI 10.3354/ame039303; Lundgren V, 2011, AQUAT MICROB ECOL, V63, P231, DOI 10.3354/ame01497; Nézan E, 2009, EUR J PROTISTOL, V45, P2, DOI 10.1016/j.ejop.2008.04.002; Norén F, 1999, EUR J PROTISTOL, V35, P233, DOI 10.1016/S0932-4739(99)80001-7; OWEN KC, 1985, J COASTAL RES, V1, P263; Park MG, 2004, J EUKARYOT MICROBIOL, V51, P145, DOI 10.1111/j.1550-7408.2004.tb00539.x; Park MG, 2006, AQUAT MICROB ECOL, V45, P101, DOI 10.3354/ame045101; Park MG, 2015, HARMFUL ALGAE, V43, P20, DOI 10.1016/j.hal.2015.02.001; Park MG, 2013, HARMFUL ALGAE, V30, pS62, DOI 10.1016/j.hal.2013.10.007; Park MG, 2010, J PHYCOL, V46, P424, DOI 10.1111/j.1529-8817.2010.00824.x; Rodríguez F, 2014, AQUAT MICROB ECOL, V72, P241, DOI 10.3354/ame01700; Smith M, 2007, MAR ECOL PROG SER, V338, P61, DOI 10.3354/meps338061; Toth GB, 2004, P ROY SOC B-BIOL SCI, V271, P733, DOI 10.1098/rspb.2003.2654; Yih W, 2004, AQUAT MICROB ECOL, V36, P165, DOI 10.3354/ame036165	28	8	8	1	30	ELSEVIER SCIENCE BV	AMSTERDAM	PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS	1568-9883	1878-1470		HARMFUL ALGAE	Harmful Algae	MAY	2017	65						1	8		10.1016/j.hal.2017.04.002	http://dx.doi.org/10.1016/j.hal.2017.04.002			8	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	EW4AS	28526115				2025-03-11	WOS:000402445000001
J	Gao, YC; Fang, HD; Dong, YH; Li, HT; Pu, CL; Zhan, AB				Gao, Yangchun; Fang, Hongda; Dong, Yanhong; Li, Haitao; Pu, Chuanliang; Zhan, Aibin			An improved method for the molecular identification of single dinoflagellate cysts	PEERJ			English	Article						Dinoflagellate cysts; Harmful algae; Ultrasonic cleaning; PCR inhibitor; Micropipette cleaning	RED-TIDE; COCHLODINIUM-POLYKRIKOIDES; RESTING CYSTS; GYMNODINIUM-CATENATUM; ALEXANDRIUM; DINOPHYCEAE; DIVERSITY; SEDIMENTS; TOXICITY; DYNAMICS	Background Dinoflagellate cysts (i.e., dinocysts) are biologically and ecologically important as they, can help dinoflagellate species survive harsh environments, facilitate their dispersal and serve as seeds for harmful algal blooms. In addition, dinocysts derived from some species can produce more toxins than vegetative forms, largely affecting species through their food webs and even human health. Consequently, accurate identification of dinocysts represents the first crucial step in many ecological studies. As dinocysts have limited or even no available taxonomic keys, molecular methods have become the first priority for dinocyst identification. However, molecular identification of dinocysts, particularly when using single cells, poses technical challenges. The most serious is the low success rate of PCR, especially for heterotrophic species. Methods. In this study, we aim to improve the success rate of single dinocyst identification for the chosen dinocyst species (Gonyaulax spinifera, Polykrikos kofoidii, Lingulodinium polyedrum, Pyrophacus steinii, Protoperidinium leonis and Protoperidinium oblongum) distributed in the South China Sea. We worked on two major technical issues: cleaning possible PCR inhibitors attached on the cyst surface and designing new dinoflagellate-specific PCR primers to improve the success of PCR amplification. Results. For the cleaning of single dinocysts separated from marine sediments, we used ultrasonic wave-based cleaning and optimized cleaning parameters. Our results showed that the optimized ultrasonic wave-based cleaning method largely improved the identification success rate and accuracy of both molecular and morphological identifications. For the molecular identification with the newly designed dinoflagellate-specific primers (185634F-18S634R), the success ratio was as high as 86.7% for single dinocysts across multiple taxa when using the optimized ultrasonic wave-based cleaning method, and much higher than that (16.7%) based on traditional micropipette-based cleaning. Discussion. The technically simple but robust method improved on in this study is expected to serve as a powerful tool in deep understanding of population dynamics of dinocysts and the causes and consequences of potential negative effects caused by dinocysts.	[Gao, Yangchun; Pu, Chuanliang; Zhan, Aibin] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, Beijing, Peoples R China; [Gao, Yangchun; Pu, Chuanliang; Zhan, Aibin] Univ Chinese Acad Sci, Chinese Acad Sci, Beijing, Peoples R China; [Fang, Hongda; Dong, Yanhong; Li, Haitao] State Ocean Adm, South China Sea Environm Monitoring Ctr, Guangzhou, Guangdong, Peoples R China	Chinese Academy of Sciences; Research Center for Eco-Environmental Sciences (RCEES); Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Zhan, AB (通讯作者)，Chinese Acad Sci, Res Ctr Ecoenvironm Sci, Beijing, Peoples R China.; Zhan, AB (通讯作者)，Univ Chinese Acad Sci, Chinese Acad Sci, Beijing, Peoples R China.	azhan@rcees.ac.cn	高, 养春/ITT-9176-2023; Zhan, Aibin/A-7240-2011		100-Talent Program of the Chinese Academy of Sciences; National Marine Public Welfare Research Program [201305010]	100-Talent Program of the Chinese Academy of Sciences(Chinese Academy of Sciences); National Marine Public Welfare Research Program	This work was supported by the 100-Talent Program of the Chinese Academy of Sciences to AZ, and by the National Marine Public Welfare Research Program (201305010). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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J	Bolch, CJS; Bejoy, TA; Green, DH				Bolch, Christopher J. S.; Bejoy, Thaila A.; Green, David H.			Bacterial Associates Modify Growth Dynamics of the Dinoflagellate <i>Gymnodinium catenatum</i>	FRONTIERS IN MICROBIOLOGY			English	Article						dinoflagellate; bacteria; interaction; model; Gymnodinium catenatum; growth	CHLOROPHYLL-A FLUORESCENCE; MARINE-BACTERIA; CYST FORMATION; CELL-DEATH; SP-NOV.; PHYTOPLANKTON; DIVERSITY; COMMUNITY; DIATOMS; ALGAE	Marine phytoplankton cells grow in close association with a complex microbial associate community known to affect the growth, behavior, and physiology of the algal host. The relative scale and importance these effects compared to other major factors governing algal cell growth remain unclear. Using algal-bacteria co-culture models based on the toxic dinoflagellate Gymnodinium catenatum, we tested the hypothesis that associate bacteria exert an independent effect on host algal cell growth. Batch co-cultures of G. catenatum were grown under identical environmental conditions with simplified bacterial communities composed of one-, two-, or three-bacterial associates. Modification of the associate community membership and complexity induced up to four-fold changes in dinoflagellate growth rate, equivalent to the effect of a 5 ffi C change in temperature or an almost six-fold change in light intensity (20-115 moles photons PAR m(-2) s(-1)). Almost three-fold changes in both stationary phase cell concentration and death rate were also observed. Co-culture with Roseobacter sp. DG874 reduced dinoflagellate exponential growth rate and led to a more rapid death rate compared with mixed associate community controls or co-culture with either Marinobacter sp. DG879, Alcanivorax sp. DG881. In contrast, associate bacteria concentration was positively correlated with dinoflagellate cell concentration during the exponential growth phase, indicating growth was limited by supply of dinoflagellate-derived carbon. Bacterial growth increased rapidly at the onset of declining and stationary phases due to either increasing availability of algal-derived carbon induced by nutrient stress and autolysis, or at mid-log phase in Roseobacter co-cultures potentially due to the onset of bacterial-mediated cell lysis. Co-cultures with the three bacterial associates resulted in dinoflagellate and bacterial growth dynamics very similar to more complex mixed bacterial community controls, suggesting that three-way co-cultures are sufficient to model interaction and growth dynamics of more complex communities. This study demonstrates that algal associate bacteria independently modify the growth of the host cell under non-limiting growth conditions and supports the concept that algal-bacterial interactions are an important structuring mechanism in phytoplankton communities.	[Bolch, Christopher J. S.; Bejoy, Thaila A.] Univ Tasmania, Inst Marine & Antarctic Studies, Launceston, Tas, Australia; [Green, David H.] Scottish Marine Inst, Scottish Assoc Marine Sci, Oban, Argyll, Scotland; [Bejoy, Thaila A.] Curtin Univ, Sch Publ Hlth, Bentley, WA, Australia	University of Tasmania; University of the Highlands & Islands; Curtin University	Bolch, CJS (通讯作者)，Univ Tasmania, Inst Marine & Antarctic Studies, Launceston, Tas, Australia.	chris.bolch@utas.edu.au	Bolch, Christopher/J-7619-2014; Green, David/E-2533-2012	Green, David/0000-0001-7499-6021	University of Tasmania Internal Research Grant Scheme [B0015641]	University of Tasmania Internal Research Grant Scheme	This work was supported by University of Tasmania Internal Research Grant Scheme B0015641 awarded to CB.	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J., 1999, MICROBIAL BIOSYSTEMS	62	42	43	2	44	FRONTIERS MEDIA SA	LAUSANNE	AVENUE DU TRIBUNAL FEDERAL 34, LAUSANNE, CH-1015, SWITZERLAND	1664-302X			FRONT MICROBIOL	Front. Microbiol.	APR 19	2017	8								670	10.3389/fmicb.2017.00670	http://dx.doi.org/10.3389/fmicb.2017.00670			12	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	ES4TR	28469613	gold, Green Published, Green Accepted			2025-03-11	WOS:000399528400002
J	Patil, JS; Rodrigues, RV; Paul, P; Sathish, K; Rafi, M; Anil, AC				Patil, J. S.; Rodrigues, R. V.; Paul, P.; Sathish, K.; Rafi, M.; Anil, A. C.			Benthic dinoflagellate blooms in tropical intertidal rock pools: elucidation of photoprotection mechanisms	MARINE BIOLOGY			English	Article						Rockpools; Benthic dinoflagellates; Amphidinium carterae; Bysmatrum caponii; Blooms; Photoprotection	PHOTOSYNTHETIC ENERGY-CONVERSION; AMPHIDINIUM-CARTERAE HULBURT; COMMUNITY STRUCTURE; SP-NOV; PHYTOPLANKTON COMMUNITIES; MARINE DINOFLAGELLATE; CYTOTOXIC MACROLIDES; TOXIC DINOFLAGELLATE; CYST ASSEMBLAGES; DINOPHYCEAE	Intertidal rockpools (RPs), forming a ubiquitous component of rocky shores, are biologically rich ecosystems influenced by short-term (hours-days) and long-term (days-seasons) fluctuating environments. So far, studies on RP biology are scarce and received no attention in India. This study elucidates planktonic microalgal composition and photoprotection mechanisms [dynamic photoinhibition, non-photochemical-quenching (NPQ), and photoprotective pigments production)] from the RPs located at high tide (HT), mid tide (MT), and low tide (LT) zones on the rocky shores of Anjuna, Goa (India) facing the Arabian Sea. MT-RPs and LT-RPs were dominated by diatoms and HT-RPs by dinoflagellates due to the blooms of autotrophic benthic dinoflagellates belonging to Amphidinium sensu stricto and Bysmatrum. The detailed microscopic analysis of these dinoflagellates showed morphological and cellular features similar to Amphidinium carterae (known harmful algae of concern) and Bysmatrum caponii. This study reports B. caponii for the first time from India as well as from northern Indian Ocean. The fast-repetitionrate- fluorometer measurements of RP microalgae suggested lower quantum efficiency (F-v/F-m) and functional absorption cross section for HT-RPs followed by MT-RPs and LT-RPs. The observed differences can thus be attributed to the microalgal composition differences and to differences in experienced irradiance of these communities. Dynamic photoinhibition was more prominent in LT-RPs followed by MT-RPs and HT-RPs. The high accumulation of photoprotective pigments in HT-RPs (due to prolong exposure to solar radiation) could be the reason for the differences. The presence of reduced de-epoxidation state and the mid-day depression in F-v/F-m coupled with elevated sigma(PSII) confirmed dominance of NPQ of reaction centres in HT-RPs compared to other pools. This study concludes that RP planktonic microalgae are eurythermal, euryhaline, and euryphotic. Concerned with increasing harmful algal bloom events further studies on diverse aspects of RP microalgae (including chemical mediated interactions) needs attention.	[Patil, J. S.; Rodrigues, R. V.; Paul, P.; Sathish, K.; Rafi, M.; Anil, A. C.] CSIR, Natl Inst Oceanog, Panaji 403004, Goa, India	Council of Scientific & Industrial Research (CSIR) - India; CSIR - National Institute of Oceanography (NIO)	Patil, JS (通讯作者)，CSIR, Natl Inst Oceanog, Panaji 403004, Goa, India.	patilj@nio.org		Krishnan, Sathish/0009-0003-3905-871X; Paul, Pranoy/0000-0002-8234-0484	Council of Scientific and Industrial Research (CSIR) [PSC 0105]	Council of Scientific and Industrial Research (CSIR)(Council of Scientific & Industrial Research (CSIR) - India)	This study was supported by the Council of Scientific and Industrial Research (CSIR) funded project Ocean Finder PSC 0105.	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APR	2017	164	4							89	10.1007/s00227-017-3123-z	http://dx.doi.org/10.1007/s00227-017-3123-z			19	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	ER1UF					2025-03-11	WOS:000398579400028
J	Sildever, S; Kremp, A; Enke, A; Buschmann, F; Maljutenko, I; Lips, I				Sildever, Sirje; Kremp, Anke; Enke, Annely; Buschmann, Fred; Maljutenko, Iija; Lips, Inga			Spring bloom dinoflagellate cyst dynamics in three eastern sub-basins of the Baltic Sea	CONTINENTAL SHELF RESEARCH			English	Article						Biecheleria baltica; Peridiniella catenata; Cyst abundance; Resuspension; Cyst transport; Baltic Sea	PERIDINIELLA-CATENATA DINOPHYCEAE; SCRIPPSIELLA-HANGOEI DINOPHYCEAE; PHYTOPLANKTON COMMUNITIES; RESTING STAGES; RESUSPENSION EVENTS; RECENT SEDIMENTS; GULF; GERMINATION; ENCYSTMENT; FINLAND	Dinoflagellate cyst abundance and species composition were investigated before, during and after the spring bloom in the Gulf of Finland, north-eastern Baltic Proper and Gulf of Riga in order to detect spatial and temporal dynamics. Transport of newly formed cysts by currents was modelled to explore the possible distance travelled by cysts before sedimentation. The cyst community of the spring bloom dinoflagellates was dominated by the cysts of Biecheleria baltica in all basins, despite its marginal value in the planktonic spring bloom community in the Gulf of Riga. Dinofiagellate cyst abundance in the surface sediments displayed temporal dynamics in all basins, however, this appeared to be also influenced by physical processes. The model simulation showed that newly formed cysts are transported around 10-30 km from the point of origin before deposited. The latter suggests that transport of resting stages in the water column significantly affects spatial cyst distribution in the sediments and thus needs to be considered in the interpretation of temporal biological productivity patterns of a water body from cyst proxies.	[Sildever, Sirje; Buschmann, Fred; Maljutenko, Iija; Lips, Inga] Tallinn Univ Technol, Marine Syst Inst, Akad Tee 15A, EE-12618 Tallinn, Estonia; [Kremp, Anke] Finnish Environm Inst, Marine Res Ctr, Erik Palmenin Aukio 1, Helsinki 00560, Finland; [Enke, Annely] Univ Tartu, Estonian Marine Inst, Maealuse 14, EE-12618 Tallinn, Estonia	Tallinn University of Technology; Finnish Environment Institute; University of Tartu; Estonian Marine Institute	Sildever, S (通讯作者)，Tallinn Univ Technol, Marine Syst Inst, Akad Tee 15A, EE-12618 Tallinn, Estonia.	sirje.sildever@msi.ttu.ee	Lips, Inga/N-5000-2019; Buschmann, Fred/JMC-7316-2023; Maljutenko, Ilja/AAG-7459-2020; Sildever, Sirje/G-6674-2017	Maljutenko, Ilja/0000-0001-7655-3363; Lips, Inga/0000-0001-6556-6281; Sildever, Sirje/0000-0002-4847-936X	Estonian Ministry of Education and Research [IUT 19-6]; European Social Fund	Estonian Ministry of Education and Research(Ministry of Education & Research Tartu); European Social Fund(European Social Fund (ESF))	This work was supported by institutional research funding of the Estonian Ministry of Education and Research [IUT 19-6] and by a grant from European Social Fund, administered by the Doctoral School of Earth Sciences and Ecology.	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Shelf Res.	APR 1	2017	137						46	55		10.1016/j.csr.2016.11.012	http://dx.doi.org/10.1016/j.csr.2016.11.012			10	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	ES1DR					2025-03-11	WOS:000399268600005
J	Rubino, F; Belmonte, M; Gall, BS				Rubino, Fernando; Belmonte, Manuela; Gall, Bella S.			Plankton resting stages in recent sediments of Haifa port, Israel (Eastern Mediterranean) - Distribution, viability and potential environmental consequences	MARINE POLLUTION BULLETIN			English	Article						Resting stages; Germination; Surface sediments; Toxic species; Pollution; Eastem Mediterranean	DINOFLAGELLATE CYST ASSEMBLAGES; RECENT MARINE-SEDIMENTS; SCRIPPSIELLA-TROCHOIDEA DINOPHYCEAE; SURFACE SEDIMENTS; COASTAL WATERS; IZMIR BAY; TAXONOMIC CLARIFICATION; DISTRIBUTION PATTERNS; INDUSTRIAL-POLLUTION; SHALLOW SEDIMENTS	Resting stages of plankton were sampled in the surficial sediments in the port of Haifa, Israel, on the eve of a major port enlargement project. We recorded the structure of the assemblages and examined their relationship with different environments within the port. Our findings reveal a remarkably high diversity coupled with low density and the highest number of oligotrich ciliate cyst types recorded from marine sediments. Near the eutrophic and highly polluted zone of the Kishon estuary ciliates were more abundant than elsewhere in the port, whereas dinoflagellates' abundance was reduced, and these trends held true both for full and empty cysts. Some harmful or potentially toxic species, such as Scrippsiella acuminata, were widespread in the port. The toxigenic species include Alexandrium minutum, Gymnodinium uncatenatum and Lingulodinium polyedrum. Active cells of the unarmoured, bloom-forming Akashiwo sanguinea were identified in the cultures obtained from the incubated sediments. (C) 2017 Elsevier Ltd. All rights reserved.	[Rubino, Fernando; Belmonte, Manuela] Inst Coastal Marine Environm, CNR, Talassografico A Cerruti, Via Roma 3, I-74123 Taranto, Italy; [Gall, Bella S.] Tel Aviv Univ, Steinhardt Museum Nat Hist, IL-6997811 Tel Aviv, Israel	Consiglio Nazionale delle Ricerche (CNR); Tel Aviv University	Rubino, F (通讯作者)，Inst Coastal Marine Environm, CNR, Talassografico A Cerruti, Via Roma 3, I-74123 Taranto, Italy.	rubino@iamc.cnr.it	Belmonte, Marisol/AAG-9759-2019; Rubino, Fernando/GOP-0332-2022	Rubino, Fernando/0000-0003-2552-2510	doctoral fellowship in Fundamental Ecology from the University of Salento, Lecce, Italy; CNR; IOLR; European Community's Seventh Framework Programme (FP7)	doctoral fellowship in Fundamental Ecology from the University of Salento, Lecce, Italy; CNR(Consiglio Nazionale delle Ricerche (CNR)); IOLR; European Community's Seventh Framework Programme (FP7)(European Union (EU))	We thank Young-Ok Kim and Sabine Agatha for useful discussion on the taxonomy of ciliate cysts, the crew of R/V "Etziona" for help with the sampling, Yaron Gertner, Chemistry Department, IOLR, for trace metals and TOC data. Esther Garces and Chris Reid commented helpfully on the manuscript. The work of M. Belmonte was supported by a doctoral fellowship in Fundamental Ecology from the University of Salento, Lecce, Italy (XXIV cycle). Support for this research was provided by CNR (FR), by IOLR, and by the European Community's Seventh Framework Programme (FP7/2007-2013) for the projects Vectors of Change in Oceans and Seas Marine Life, Impact on Economic Sectors (VECTORS) and Towards COast to COast NETworks of marine protected areas (from the shore to the high and deep sea), coupled with sea-based wind energy potential (COCONET) (BSG). The sampling took place while BSG worked in the National Institute of Oceanography, IOLR, Haifa.	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Pollut. Bull.	MAR 15	2017	116	1-2					258	269		10.1016/j.marpolbul.2016.12.078	http://dx.doi.org/10.1016/j.marpolbul.2016.12.078			12	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	ES4LU	28089552				2025-03-11	WOS:000399507600043
J	Natsuike, M; Oikawa, H; Matsuno, K; Yamaguchi, A; Imai, I				Natsuike, Masafumi; Oikawa, Hiroshi; Matsuno, Kohei; Yamaguchi, Atsushi; Imai, Ichiro			The physiological adaptations and toxin profiles of the toxic <i>Alexandrium fundyense</i> on the eastern Bering Sea and Chukchi Sea shelves	HARMFUL ALGAE			English	Article						Alexandrium fundyense; Alexandrium tamarense (north American clade); Physiology; Chukchi Sea; Bering Sea; Cell growth; Cyst germination; Toxin profile; Water temperature; Salinity; Irradiance; Saxitoxin	TAMARENSE DINOPHYCEAE; GONYAULAX-TAMARENSIS; PROTOGONYAULAX-TAMARENSIS; RESTING CYSTS; COMPLEX DINOPHYCEAE; SPECIES COMPLEX; COASTAL WATERS; NORTHERN JAPAN; GERMINATION; GROWTH	Abundant cyst distributions of the toxic dinoflagellate Alexandrium fundyense (previous A. tamarense north American Glade) were recently observed on the north Chukchi Sea shelf and on the eastern Bering Sea shelf, suggesting that A. fundyense is both highly adapted to the local environments in the high latitude areas and might cause toxin contamination of plankton feeders. However, little is known about the physiological characteristics and toxin profiles of A. fundyense in these areas, which are characterized by low water temperatures, weak sunlight, and more or less permanent ice cover during winter. To clarify the physiological characteristics of A. fundyense, the effects of water temperature and light intensity on the vegetative growth and toxin profiles of this species were examined using A. fundyense strains isolated from one sediment sample collected from each area. Using the same sediments samples, seasonal changes of the cyst germination in different water temperatures were investigated. Vegetative cells grew at temperatures as low as 5 degrees C and survived at 1 degrees C under relatively low light intensity. They also grew at moderate water temperatures (10-15 degrees C). Their cysts could germinate at low temperatures (1 degrees C) and have an endogenous dormancy period from late summer to early spring, and warmer water temperatures (5-15 degrees C) increased germination success. These physiological characteristics suggest that A. fundyense in the Chukchi Sea and eastern Bering Sea is adapted to the environments of high latitude areas. In addition, the results suggest that in the study areas A. fundyense has the potential to germinate and grow when water temperatures increase. Cellular toxin amounts of A. fundyense strains from the eastern Bering Sea and Chukchi Sea were ranged from 7.2 to 38.2 fmol cell(-1). These toxin amounts are comparable with A. fundyense strains isolated from other areas where PSP toxin contamination of bivalves occurs. The dominant toxin of the strains isolated from the Chukchi Sea was saxitoxin, while mostA.fundyense strains from the eastern Bering Sea are dominated by the C2 toxin. Toxin profiles similar to those detected in Chukchi Sea have not been reported by any previous research. The dominance of a highly toxic PST variant in Chukchi A. fundyense suggests that presence of the species at low cell concentrations may cause toxin contamination of predators. This study revealed that abundant A. fundyense cysts deposited on the eastern Bering Sea and Chukchi Sea shelves potentially germinate and grow with PSP toxin contents in the local environments. In conclusion, a high risk of PSP occurrences exists on the eastern Bering Sea and Chukchi Sea shelves. (C) 2017 Elsevier B.V. All rights reserved.	[Natsuike, Masafumi; Yamaguchi, Atsushi; Imai, Ichiro] Hokkaido Univ, Grad Sch Fisheries Sci, 3-1-1 Minato Cho, Hakodate, Hokkaido 0418611, Japan; [Natsuike, Masafumi] Tokyo Inst Technol, Sch Environm & Soc, Meguro Ku, 2-12-1-M1-4 Ookayama, Tokyo 1528552, Japan; [Oikawa, Hiroshi] Natl Res Inst Fisheries Sci, 2-12-4 Fukuura, Kanazawa, Kanagawa 2368648, Japan; [Matsuno, Kohei] Australian Antarctic Div, 203 Channel Highway, Kingston, Tas 7050, Australia	Hokkaido University; Institute of Science Tokyo; Tokyo Institute of Technology; Japan Fisheries Research & Education Agency (FRA); Australian Antarctic Division	Natsuike, M (通讯作者)，Tokyo Inst Technol, Sch Environm & Soc, Meguro Ku, 2-12-1-M1-4 Ookayama, Tokyo 1528552, Japan.	natsuike.m.aa@m.titech.ac.jp	Matsuno, Kohei/AAJ-6510-2021; Yamaguchi, Atsushi/A-8613-2012	Matsuno, Kohei/0000-0001-9793-7622; Yamaguchi, Atsushi/0000-0002-5646-3608	Japan Society for the Promotion of Science (JSPS) [24248032, 24110005]; GRENE Arctic Climate Change Research Project	Japan Society for the Promotion of Science (JSPS)(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); GRENE Arctic Climate Change Research Project	We are grateful to the captains and crews of the R/V Mirai and T/S Oshoro-Maru for assistance of the field observations. Professor Y. Oshima of Tohoku University, Professor M. Asakawa of Hiroshima University, and the Food Safety and Consumer Affairs Bureau in the Ministry of Agriculture, Forestry and Fisheries of Japan kindly supplied the PSP toxin standards. We thank the anonymous reviewers for their fruitful comments. 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J	Brandenburg, KM; Domis, LND; Wohlrab, S; Krock, B; John, U; van Scheppingen, Y; van Donk, E; Van de Waal, DB				Brandenburg, Karen M.; Domis, Lisette N. de Senerpont; Wohlrab, Sylke; Krock, Bernd; John, Uwe; van Scheppingen, Yvonne; van Donk, Ellen; Van de Waal, Dedmer B.			Combined physical, chemical and biological factors shape <i>Alexandrium ostenfeldii</i> blooms in the Netherlands	HARMFUL ALGAE			English	Article						Alexandrium; Nutrients; Grazing; Wind speed; Temperature; Salinity	HARMFUL ALGAL BLOOMS; PERUVIANUM BALECH; TOXIN PRODUCTION; MENDIOLA BALECH; THAU LAGOON; PHYTOPLANKTON COMMUNITIES; CLIMATE-CHANGE; GROWTH; DINOPHYCEAE; SALINITY	Harmful algal blooms (HABs) are globally expanding, compromising water quality worldwide. HAB dynamics are determined by a complex interplay of abiotic and biotic factors, and their emergence has often been linked to eutrophication, and more recently to climate change. The dinoflagellate Alexandrium is one of the most widespread HAB genera and its success is based on key functional traits like allelopathy, mixotrophy, cyst formation and nutrient retrieval migrations. Since 2012, dense Alexandrium ostenfeldii blooms (up to 4500 cells mL(-1)) have recurred annually in a creek located in the southwest of the Netherlands, an area characterized by intense agriculture and aquaculture. We investigated how physical, chemical and biological factors influenced A. ostenfeldii bloom dynamics over three consecutive years (2013-2015). Overall, we found a decrease in the magnitude of the bloom over the years that could largely be linked to changing weather conditions during summer. More specifically, low salinities due to excessive rainfall and increased wind speed corresponded to a delayed A. ostenfeldii bloom with reduced population densities in 2015. Within each year, highest population densities generally corresponded to high temperatures, low DIN:DIP ratios and low grazer densities. Together, our results demonstrate an important role of nutrient availability, absence of grazing, and particularly of the physical environment on the magnitude and duration of A. ostenfeldii blooms. Our results suggest that predicted changes in the physical environment may enhance bloom development in future coastal waters and embayments. (C) 2017 Elsevier B.V. All rights reserved.	[Brandenburg, Karen M.; Domis, Lisette N. de Senerpont; van Donk, Ellen; Van de Waal, Dedmer B.] Netherlands Inst Ecol, Dept Aquat Ecol, Wageningen, Netherlands; [Domis, Lisette N. de Senerpont] Wageningen Univ, Aquat Ecol & Water Qual Management Grp, Wageningen, Netherlands; [Wohlrab, Sylke; Krock, Bernd; John, Uwe] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Dept Ecol Chem, Bremerhaven, Germany; [van Scheppingen, Yvonne] Waterschap Scheldestromen, Middelburg, Netherlands	Royal Netherlands Academy of Arts & Sciences; Netherlands Institute of Ecology (NIOO-KNAW); Wageningen University & Research; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Brandenburg, KM (通讯作者)，Netherlands Inst Ecol, Dept Aquat Ecol, Wageningen, Netherlands.	k.brandenburg@nioo.knaw.nl	wohlrab, sylke/R-7435-2016; john, uwe/S-3009-2016; Krock, Bernd/ABB-7541-2020; Van de Waal, Dedmer/B-8002-2012; van Donk, Ellen/B-7272-2008; KNAW, NIOO-KNAW/A-4320-2012; De Senerpont Domis, Lisette Nicole/C-2902-2008	van Donk, Ellen/0000-0003-3279-4936; KNAW, NIOO-KNAW/0000-0002-3835-159X; Brandenburg, Karen/0000-0002-9342-3349; De Senerpont Domis, Lisette Nicole/0000-0001-7509-9541; Wohlrab, Sylke/0000-0003-3190-0880; Van de Waal, Dedmer/0000-0001-8803-1247	Gieskes-Strijbis Foundation; PACES research program of the Alfred-Wegener Institute; Helmholtz-Zentrum filr Polar- und Meeresforschung; German Research Foundation (DFG) Priority Programme DynaTrait [SPP1704, Jo 702/7-1]	Gieskes-Strijbis Foundation; PACES research program of the Alfred-Wegener Institute; Helmholtz-Zentrum filr Polar- und Meeresforschung; German Research Foundation (DFG) Priority Programme DynaTrait(German Research Foundation (DFG))	The authors thank Dennis Waasdorp, Nico Helmsing, Erik Reichman and Suzanne Naus-Wiezer for their assistance during the field work and technical support. We also thank Annegret Mailer for analyses of PSP toxins. Furthermore, we are grateful to Waterschap Scheldestromen for collecting a substantial part of the data over the past years and providing it to us. We would like to thank Ernst de Bola from Brachion-Idee for zooplankton counts and biovolume assessments. The work of KB is funded by the Gieskes-Strijbis Foundation. Financial support for BK and UJ was provided by the PACES research program of the Alfred-Wegener Institute, Helmholtz-Zentrum filr Polar- und Meeresforschung, and by the German Research Foundation (DFG) Priority Programme DynaTrait (SPP1704; Jo 702/7-1) for UJ and SW.	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J	Zhao, Y; Tang, XX; Zhao, XW; Wang, Y				Zhao, Yan; Tang, Xuexi; Zhao, Xiaowei; Wang, You			Effect of various nitrogen conditions on population growth, temporary cysts and cellular biochemical compositions of <i>Karenia</i> <i>mikimotoi</i>	PLOS ONE			English	Article							HARMFUL ALGAL BLOOMS; RED TIDE; HETEROCAPSA-CIRCULARISQUAMA; PHAEODACTYLUM-TRICORNUTUM; PHOTOSYNTHETIC APPARATUS; DINOFLAGELLATE BLOOMS; MARINE-PHYTOPLANKTON; NUTRIENT; EUTROPHICATION; BAY	The harmful algal bloom (HAB)-forming dinoflagellate Karenia mikimotoi was exposed to different nitrogen (N) conditions, in order to study the population growth, temporary cyst production and cellular biochemical compositions in laboratory. The results indicated the population growth of K. mikimotoi was inhibited by different levels of N starvation but showed similar fast recovery after the resupplement of N, and temporary cysts were induced in the period of N starvation. K. mikimotoi grew well in inorganic (NO3-, NO2- and NH4+) and organic (urea) nitrogen sources, but the growth parameters (K, T-p, r) showed differences when simulated by Logistic model regressions. When the cellular organic compounds were measured simultaneously, K. mikimotoi cultured in urea produced more short-chained fatty acids while K. mikimotoi cultured in NH4+ produced more non-fatty acids compounds, indicating the potential change of toxins production cultured by various N sources. We concluded that K. mikimotoi could adapt to fluctuating N environments typical of coastal environments including total N concentration (deficiency or recovery) and relative compositions (different N sources).	[Zhao, Yan; Tang, Xuexi; Zhao, Xiaowei; Wang, You] Ocean Univ China, Dept Marine Ecol, Qingdao, Peoples R China	Ocean University of China	Wang, Y (通讯作者)，Ocean Univ China, Dept Marine Ecol, Qingdao, Peoples R China.	wangyou@ouc.edu.cn	Zhao, Xiaowei/LRB-5418-2024		National Science Foundation of China [U 1406403]	National Science Foundation of China(National Natural Science Foundation of China (NSFC))	This work was supported by the National Science Foundation of China, grant number: U 1406403, (http://wm.nsfc.gov.cn/). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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J	Narale, DD; Anil, AC				Narale, Dhiraj Dhondiram; Anil, Arga Chandrashekar			Spatial distribution of dinoflagellates from the tropical coastal waters of the South Andaman, India: Implications for coastal pollution monitoring	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellates; Cyst; South Andaman region; Anthropogenic impact; Hannful algal bloom species	HARMFUL ALGAL BLOOMS; CYST ASSEMBLAGES; RECENT SEDIMENTS; CERATIUM-FURCA; PHYTOPLANKTON BLOOMS; SURFACE SEDIMENTS; EAST-COAST; PORT-BLAIR; CHINA SEA; DAYA BAY	Dinoflagellate community structure from two semi-enclosed areas along the South Andaman region, India, was investigated to assess the anthropogenic impact on coastal water quality. At the densely inhabited Port Blair Bay, the dominance of mixotrophs in water and Protoperidinoids in sediments was attributed to anthropogenic nutrient enrichment and prey availability. A significant decrease in dinoflagellate abundance from inner to outer bay emphasize the variation in nutrient availability. The dominance of autotrophs and Gonyaulacoid cysts at the North Bay highlight low nutrient conditions with less anthropogenic pressure. The occurrence of oceanic Omithocercus steinii and Diplopsalis sp. could evince the oceanic water intrusion into the North Bay. Nine potentially harmful and red-tide-forming species including Alexandrium tamarense complex, A. minutum were identified in this study. Although there are no harmful algal bloom (HABs) incidences in this region so far, increasing coastal pollution could support their candidature towards the future HABs initiation and development. (C) 2016 Elsevier Ltd. All rights reserved.	[Narale, Dhiraj Dhondiram; Anil, Arga Chandrashekar] CSIR, Natl Inst Oceanog, Panaji 403004, Goa, India	Council of Scientific & Industrial Research (CSIR) - India; CSIR - National Institute of Oceanography (NIO)	Anil, AC (通讯作者)，CSIR, Natl Inst Oceanog, Panaji 403004, Goa, India.	acanil@nio.org			CSIR; Indian XBT Program (CSIR-NIO) - INCOIS, Ministry of Earth Sciences, India [GAP2018]; Ballast Water Management Program (CSIR-NIO) - Ministry of Shipping, India [GAP2429]	CSIR(Council of Scientific & Industrial Research (CSIR) - India); Indian XBT Program (CSIR-NIO) - INCOIS, Ministry of Earth Sciences, India; Ballast Water Management Program (CSIR-NIO) - Ministry of Shipping, India	We are grateful to Director, CSIR-National Institute of Oceanography (NIO), Goa for his support. We thank Dr. V.V. Gopalkrishna, NIO for continuous support; Dr. Grenson George, CARL Port Blair for field sampling arrangements and lab facility. Acknowledge Mr. Chico Rebello for assistance during field work; Dr. Prakash Babu for sedimentary analysis. D.D.N. is grateful to CSIR for awarding the Senior Research Fellowship. This study was financially supported by the Indian XBT Program (GAP2018; CSIR-NIO) funded by INCOIS, Ministry of Earth Sciences, India and the Ballast Water Management Program (GAP2429; CSIR-NIO) funded by Ministry of Shipping, India. This is NIO contribution (No. 5968).	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Pollut. Bull.	FEB 15	2017	115	1-2					498	506		10.1016/j.marpolbul.2016.11.035	http://dx.doi.org/10.1016/j.marpolbul.2016.11.035			9	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	EL1RX	27988024				2025-03-11	WOS:000394399800073
J	Corcoran, AA; Wolny, J; Leone, E; Ivey, J; Murasko, S				Corcoran, Alina A.; Wolny, Jennifer; Leone, Erin; Ivey, James; Murasko, Susan			Drivers of phytoplankton dynamics in old Tampa Bay, FL (USA), a subestuary lagging in ecosystem recovery	ESTUARINE COASTAL AND SHELF SCIENCE			English	Article						Phytoplankton; Algal blooms; Community composition; Monitoring; Pyrodinium bahamense; USA; Florida; Tampa Bay	PYRODINIUM-BAHAMENSE; RESIDUAL CIRCULATION; FLORIDA; ESTUARY; GULF; DISTRIBUTIONS; WATERS; MAINE	In the past four decades, consistent and coordinated management actions led to the recovery of Tampa Bay, FL (USA) an estuary that was declared dead in the 1970s. An exception to this success story is Old Tampa Bay, the northernmost subestuary of the system. Compared to the other bay segments, Old Tampa Bay is characterized by poorer water quality and spring and summer blooms of cyanobacteria, pico-plankton, diatoms, and the saxitoxin-producing dinoflagellate Pyrodinium bahamense. Together, these blooms contribute to light attenuation and lagging recovery of seagrass beds. Yet, studies of phytoplankton dynamics within Old Tampa Bay have been limited both in number and in their spatiotemporal resolution. In this, study, we used field sampling and continuous monitoring to (1) characterize temporal and spatial variability in phytoplankton biomass and community composition and (2) identify key drivers of the different phytoplankton blooms in Old Tampa Bay. Overall, temporal variability in phytoplankton biomass (using chlorophyll a as a proxy) and community composition surpassed spatial variability of these parameters. We found a base community of small diatoms and flagellates, as well as certain dinoflagellates, that persisted year round in the system. Seasonally, freshwater runoff stimulated phytoplankton growth, specifically that of chlorophytes, cyanobacteria and other dinoflagellates consistent with predictions based on ecological theory. On shorter time scales, salinity, visibility, and freshwater inflows were important predictors of phytoplankton biomass. With respect to P. bahamense, environmental drivers including salinity, temperature and dissolved nutrient concentrations explained 24% of the variability in cell abundance, indicating missing explanatory parameters in our study for this taxon, such as cyst density and location of cyst beds. Spatially, we found differences in community trajectories across north south and west east gradients, with the northernmost sampling station being the most unique in the region. This work contributes to the knowledge of phytoplankton biomass and community composition in Tampa Bay by generating spatially and temporally rich phytoplankton community and environmental data for the Old Tampa Bay subestuary. Moreover, it enhances our understanding of bloom drivers and provides recommendations for ecosystem management. Specifically, our findings support continued nutrient reduction measures as a way to mitigate seasonal blooms of diatoms, cyanobacteria and chlorophytes, but not necessarily blooms of P. bahamense. Prediction and mitigation of P. bahamnese blooms should incorporate first order drivers such as cyst location and abundance. (C) 2016 Elsevier Ltd. All rights reserved.	[Corcoran, Alina A.; Wolny, Jennifer; Leone, Erin; Ivey, James; Murasko, Susan] Fish & Wildlife Res Inst, Florida Fish & Wildlife Conservat Commiss, 100 8th Ave SE, St Petersburg, FL 33701 USA; [Wolny, Jennifer] Maryland Dept Nat Resources, 1919 Lincoln Dr, Annapolis, MD 21401 USA; [Ivey, James] Univ S Florida, Dept Environm Sci Policy & Geog, 140 7th Ave 5, St Petersburg, FL 33701 USA	Florida Fish & Wildlife Conservation Commission; State University System of Florida; University of South Florida	Corcoran, AA (通讯作者)，Sapphire Energy, 9035 Adv Ave, Las Cruces, NM 88007 USA.	alina.corcoran@sapphireenergy.com		Wolny, Jennifer L./0000-0002-3556-5015; Ivey, James/0000-0003-3308-0193; , Alina Corcoran/0009-0001-3851-7668	Florida Fish and Wildlife Conservation Commission; Tampa Bay Environmental Fund through a National Fish and Wildlife Grant [1802-13-036518]	Florida Fish and Wildlife Conservation Commission; Tampa Bay Environmental Fund through a National Fish and Wildlife Grant	This work was supported by the Florida Fish and Wildlife Conservation Commission and the Tampa Bay Environmental Fund through a National Fish and Wildlife Grant (# 1802-13-036518). We acknowledge Mary Arnold, Julie Brame, Amber Bratcher, Matt Garrett, Karen Henschen, Cary Lopez, Laura Markley, Eric Muhlbach, Eric Robinson, and Ashley Yunker for their contributions to data collection and compilation. We also thank two anonymous reviewers who helped to improve this manuscript.	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Coast. Shelf Sci.	FEB 5	2017	185						130	140		10.1016/j.ecss.2016.11.009	http://dx.doi.org/10.1016/j.ecss.2016.11.009			11	Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology; Oceanography	EK0PJ					2025-03-11	WOS:000393628700012
J	Natsuike, M; Yokoyama, K; Nishitani, G; Yamada, Y; Yoshinaga, I; Ishikawa, A				Natsuike, Masafumi; Yokoyama, Katsuhide; Nishitani, Goh; Yamada, Yuichiro; Yoshinaga, Ikuo; Ishikawa, Akira			Germination fluctuation of toxic <i>Alexandrium</i> <i>fundyense</i> and <i>A</i>. <i>pacificum</i> cysts and the relationship with bloom occurrences in Kesennuma Bay, Japan	HARMFUL ALGAE			English	Article						Alexandrium fundyense; Alexandrium pacificum; Cyst; Germination; Mesocosm experiment; Toxic bloom	GREAT EAST JAPAN; SETO-INLAND-SEA; DINOFLAGELLATE GONYAULAX-TAMARENSIS; RESTING CYSTS; POPULATION-DYNAMICS; NORTHEAST JAPAN; HIROSHIMA-BAY; ONAGAWA BAY; SURFACE SEDIMENTS; SAMPLING DEVICE	While cyst germination may be an important factor for the initiation of harmful/toxic blooms, assessments of the fluctuation in phytoplankton cyst germination, from bottom sediments to water columns, are rare in situ due to lack of technology that can detect germinated cells in natural bottom sediments. This study introduces a simple mesocosm method, modeled after previous in situ methods, to measure the germination of plankton resting stage cells. Using this method, seasonal changes in germination fluxes of toxic dinoflagellates resting cysts, specifically Alexandrium fundyense (A. tamarense species complex Group I) and A. pacificurn (A. tamarense species complex Group IV), were investigated at a fixed station in Kesennuma Bay, northeast Japan, from April 2014 to April 2015. This investigation was conducted in addition to the typical samplings of seawater and bottom sediments to detect the dinoflagellates vegetative cells and resting cysts. Bloom occurrences of A. fundyense were observed June 2014 and February 2015 with maximum cell densities reaching 3.6 x 10(6) cells m(-2) and 1.4 x 10(7) cells m(-2), respectively. The maximum germination fluxes of A. fundyense cysts occurred in April 2014 and December 2014 and were 9.3 x 10(3) cells m(-2) day(-1) and 1.4 x 10(4) cells m(-2) day(-1), respectively. For A. pacificum, the highest cell density was 73 x 10(7) cells m(-2) during the month of August, and the maximum germination fluxes occurred in July and August, reaching 5.8 x 10(2) cells m(-2) day(-1). Thus, this study revealed the seasonal dynamics of A. fundyense and A. pacificurn cyst germination and their bloom occurrences in the water column. Blooms occurred one to two months after peak germination, which strongly suggests that both the formation of the initial population by cyst germination and its continuous growth in the water column most likely contributed to toxic bloom occurrences of A. fundyense and A. pacific -um in the bay. (C) 2016 Elsevier B.V. All rights reserved.	[Natsuike, Masafumi] Moune Inst Forest Sato Sea Studies, NPO Mori Wa Umi No Koibito, 212 Higashi Moune,Karakuwa Cho, Kesennuma, Miyagi 9880582, Japan; [Yokoyama, Katsuhide] Tokyo Metropolitan Univ, Grad Sch Urban Environm Sci, 1-1 Minami Osawa, Hachioji, Tokyo 1920397, Japan; [Nishitani, Goh] Tohoku Univ, Grad Sch Agr Sci, Aoba Ku, 1-1 Amamiya Machi, Sendai, Miyagi 9818555, Japan; [Yamada, Yuichiro] Kitasato Univ, Sch Marine Biosci, 1-15-1 Kitasato, Sagamihara, Kanagawa 2520373, Japan; [Yoshinaga, Ikuo] Tottori Univ Environm Sci, Grad Sch Environm Sci & Business Adm, 1-1-1 Wakabadai Kita, Tottori, Tottori 6891111, Japan; [Ishikawa, Akira] Mie Univ, Grad Sch Bioresources, 1577 Kurima Machiya Cho, Tsu, Mie 5148507, Japan; [Natsuike, Masafumi] Tokyo Inst Technol, Sch Environm & Soc, Meguro Ku, 2-12-1-M1-4 Ookayama, Tokyo 1528550, Japan	Tokyo Metropolitan University; Tohoku University; Kitasato University; Mie University; Institute of Science Tokyo; Tokyo Institute of Technology	Natsuike, M (通讯作者)，Moune Inst Forest Sato Sea Studies, NPO Mori Wa Umi No Koibito, 212 Higashi Moune,Karakuwa Cho, Kesennuma, Miyagi 9880582, Japan.; Natsuike, M (通讯作者)，Tokyo Inst Technol, Sch Environm & Soc, Meguro Ku, 2-12-1-M1-4 Ookayama, Tokyo 1528550, Japan.	natsuike.m.aa@m.titech.ac.jp	Yokoyama, Katsuhide/AAM-7655-2021	Yokoyama, Katsuhide/0000-0003-1576-6239	Japan Fund for Global Environment of the Environmental Restoration and Conservation Agency; JSPS KAKENHI [25249068]; Environment Fund of Mitsui Co. Ltd.; Grants-in-Aid for Scientific Research [25249068, 26340049, 16K07823] Funding Source: KAKEN	Japan Fund for Global Environment of the Environmental Restoration and Conservation Agency; JSPS KAKENHI(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI)); Environment Fund of Mitsui Co. Ltd.; Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	We thank Dr. Tomoko Sakami of the Tohoku National Fisheries Research Institute, and Dr. Ichiro Imai of the Graduate School of Fisheries Science, Hokkaido University, for providing valuable comments to improve this manuscript. We are grateful to Makoto Hatakeyama of NPO Mori wa Umi no Koibito for helping with field sampling. This study was funded by the Japan Fund for Global Environment of the Environmental Restoration and Conservation Agency, JSPS KAKENHI Grant Number 25249068, and the Environment Fund of Mitsui & Co. Ltd.	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J	Taniuchi, Y; Watanabe, T; Kakehi, S; Sakami, T; Kuwata, A				Taniuchi, Yukiko; Watanabe, Tsuyoshi; Kakehi, Shigeho; Sakami, Tomoko; Kuwata, Akira			Seasonal dynamics of the phytoplankton community in Sendai Bay, northern Japan	JOURNAL OF OCEANOGRAPHY			English	Article						Sendai Bay; Diatom; Dinoflagellate; Picoeukaryote; Cyanobacteria	GREAT EAST JAPAN; FUNKA BAY; TSUNAMI; SYNECHOCOCCUS; EARTHQUAKE; ABUNDANCE; PACIFIC; IMPACTS; GROWTH; CYSTS	Sendai Bay is located on the Pacific coast of northern Japan and suffered serious damage following the 2011 off the Pacific coast of Tohoku earthquake and tsunami in March 2011. To assess the impact on the marine ecosystem, information was needed on the phytoplankton communities and their seasonal variation. However, such information was limited. Therefore, an intensive monitoring of the phytoplankton was carried out from March 2012 to April 2014. Seasonal variation of the phytoplankton community was similar at coastal and offshore stations. Total phytoplankton biomass, based on Chl a concentration, peaked in spring and then decreased to a minimum in summer, before gradually increasing during early winter and peaking again in the following spring. This seasonal pattern was consistent with previous studies conducted before the earthquake and tsunami. Also, size structure of the phytoplankton community and its four main groups was estimated from the size-fractioned samples of Chl a. Our results also showed that the spring bloom consisted of large diatoms, with their growth ceasing due to nitrogen depletion. The bloom was followed by a summer period where cyanobacteria and picoeukaryote became dominant, with high cell densities in spite of low nutrient concentrations. In addition, sporadic environmental changes, such as those following typhoons, were observed. These resulted in large increases/decreases in individual phytoplankton groups.	[Taniuchi, Yukiko; Watanabe, Tsuyoshi; Kakehi, Shigeho; Sakami, Tomoko; Kuwata, Akira] Tohoku Natl Fisheries Res Inst, Shinhama Cho, Shiogama, Miyagi 9850001, Japan; [Taniuchi, Yukiko] Hokkaido Natl Fisheries Res Inst, 116 Katsurakoi, Kushiro, Hokkaido, Japan	Japan Fisheries Research & Education Agency (FRA); Japan Fisheries Research & Education Agency (FRA)	Taniuchi, Y (通讯作者)，Tohoku Natl Fisheries Res Inst, Shinhama Cho, Shiogama, Miyagi 9850001, Japan.; Taniuchi, Y (通讯作者)，Hokkaido Natl Fisheries Res Inst, 116 Katsurakoi, Kushiro, Hokkaido, Japan.	taniuchi@affrc.go.jp	Kuwata, Akira/E-1121-2013		CREST (JST)	CREST (JST)(Japan Science & Technology Agency (JST)Core Research for Evolutional Science and Technology (CREST))	We particularly wish to thank Y. Sasaki and Dr. H. Saito for nutrient analyses and the captain and crews of Wakatakamaru and Dai5Taikai-maru for their cooperation. We also thank Dr. D. Jewson for his critical reading of the manuscript. This work was supported by CREST (JST).	Agawin NSR, 1998, MAR ECOL PROG SER, V170, P45, DOI 10.3354/meps170045; [Anonymous], J OCEANOGR UNPUB; [Anonymous], REPORTS SENDAI MUNIC; [Anonymous], 1971, INTERIM REPORT STUDI; [Anonymous], J OCEANOGR UNPUB; [Anonymous], J JAPAN SOC CIVIL SE; [Anonymous], REPORTS SENDAI MUNIC; [Anonymous], J OCEANOGR UNPUB; DAVIS JJ, 1958, ECOLOGY, V39, P530, DOI 10.2307/1931764; Falkowski P. 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Oceanogr.	FEB	2017	73	1					1	9		10.1007/s10872-015-0334-0	http://dx.doi.org/10.1007/s10872-015-0334-0			9	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	EJ1AZ					2025-03-11	WOS:000392943800001
J	Tachibana, A; Nishibe, Y; Fukuda, H; Kawanobe, K; Tsuda, A				Tachibana, Aiko; Nishibe, Yuichiro; Fukuda, Hideki; Kawanobe, Kyoko; Tsuda, Atsushi			Phytoplankton community structure in Otsuchi Bay, northeastern Japan, after the 2011 off the Pacific coast of Tohoku Earthquake and tsunami	JOURNAL OF OCEANOGRAPHY			English	Article						Phytoplankton; Diatom; Otsuchi Bay; Earthquake; Seasonality	PSEUDO-NITZSCHIA SPP.; GREAT EAST JAPAN; DYNAMICS; HOKKAIDO; IMPACTS; CYSTS	The tsunami caused by the 2011 off the Pacific coast of Tohoku Earthquake seriously damaged the Pacific coast of northeastern Japan. In addition to its direct disturbance, a tsunami can indirectly affect coastal pelagic ecosystems via topographical and environmental changes. We investigated seasonal changes in the phytoplankton community structure in Otsuchi Bay, northeastern Japan, from May 2011, which was 2 months after the tsunami, to May 2013. The phytoplankton species composition in May 2011 was similar to that observed in May 2012 and 2013. The present results are consistent with the dominant species and water-mass indicator species of phytoplankton in past records. These results suggest that there was no serious effect of the tsunami on the phytoplankton community in Otsuchi Bay. Community analysis revealed that two distinct seasonal communities appeared in each year of the study period. The spring-summer community was characterized by warm-water Chaetoceros species, and dinoflagellates appeared from May to September. The fall-winter community was characterized by cold neritic diatoms, which appeared from November to March. The succession from the spring-summer community to the fall-winter community took place within a particular water mass, and the fall-winter community appeared in both the surface water and the Oyashio water mass, suggesting that water-mass exchange is not the only factor that determines the phytoplankton community structure in Otsuchi Bay.	[Tachibana, Aiko; Nishibe, Yuichiro; Fukuda, Hideki; Tsuda, Atsushi] Univ Tokyo, Atmosphere & Ocean Res Inst, 5-1-5 Kashiwanoha, Kashiwa, Chiba 2778564, Japan; [Kawanobe, Kyoko] 7-83 Omotemachi, Aizuwakamatu, Fukushima 9650831, Japan	University of Tokyo	Tachibana, A (通讯作者)，Univ Tokyo, Atmosphere & Ocean Res Inst, 5-1-5 Kashiwanoha, Kashiwa, Chiba 2778564, Japan.	t.aiko@aori.u-tokyo.ac.jp	FUKUDA, Hideki/KVB-9846-2024	Tachibana, Aiko/0000-0002-6855-6297	Ministry of Education, Culture, Sports, Science and Technology; Grants-in-Aid for Scientific Research [15H04534] Funding Source: KAKEN	Ministry of Education, Culture, Sports, Science and Technology(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)); Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	We thank T. Abe and M. Abe of Myoho-Maru and M. Kurosawa, M. Hirano, A. Yaguchi, T. Suzuki, and other members of the International Coastal Research Center, Atmosphere and Ocean Research Institute, University of Tokyo, for assistance with sampling in Otsuchi Bay after the 2011 tsunami. We are also grateful to the captain and crew of the R/V Tansei-Maru, the Japan Agency for Marine-Earth Science and Technology, for their support at sea. This study was supported through the research program 'Tohoku Ecosystem-Associated Marine Sciences' from the Ministry of Education, Culture, Sports, Science and Technology.	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FEB	2017	73	1					55	65		10.1007/s10872-016-0355-3	http://dx.doi.org/10.1007/s10872-016-0355-3			11	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	EJ1AZ					2025-03-11	WOS:000392943800005
J	Kang, Y; Tang, YZ; Taylor, GT; Gobler, CJ				Kang, Yoonja; Tang, Ying-Zhong; Taylor, Gordon T.; Gobler, Christopher J.			DISCOVERY OF A RESTING STAGE IN THE HARMFUL, BROWN-TIDE-CAUSING PELAGOPHYTE, <i>AUREOUMBRA LAGUNENSIS</i>: A MECHANISM POTENTIALLY FACILITATING RECURRENT BLOOMS AND GEOGRAPHIC EXPANSION	JOURNAL OF PHYCOLOGY			English	Article						Aureoumbra; brown tide; cysts; harmful algal blooms; metabolism; resting stage	ALGA AUREOCOCCUS-ANOPHAGEFFERENS; CYST FORMATION; PHOTOSYNTHETIC APPARATUS; TOXIC DINOFLAGELLATE; NITROGEN LIMITATION; CLIMATE-CHANGE; DARK SURVIVAL; CELL-FORMATION; GROWTH-RATE; PHYTOPLANKTON	To date, the life stages of pelagophytes have been poorly described. This study describes the ability of Aureoumbra lagunensis to enter a resting stage in response to environmental stressors, including high temperature, nutrient depletion, and darkness, as well as their ability to revert from resting cells back to vegetative cells after exposure to optimal light, temperature, and nutrient conditions. Resting cells became round in shape and larger in size, filled with red accumulation bodies, had smaller and fewer plastids, more vacuolar space, contained lower concentrations of chl a and RNA, displayed reduced photosynthetic efficiency, and lower respiration rates relative to vegetative cells. Analysis of vegetative and resting cells using Raman microspectrometry indicated resting cells were enriched in sterols within red accumulation bodies and were depleted in pigments relative to vegetative cells. Upon reverting to vegetative cells, cells increased their chl a content, photosynthetic efficiency, respiration rate, and growth rate and lost accumulation bodies as they became smaller. The time required for resting cells to resume vegetative growth was proportional to both the duration and temperature of dark storage, possibly due to higher metabolic demands on stored energy (sterols) reserves during longer period of storage and/or storage at higher temperature (20 degrees C vs. 10 degrees C). Resting cells kept in the dark at 10 degrees C for 7 months readily reverted back to vegetative cells when transferred to optimal conditions. Thus, the ability of Aureoumbra to form a resting stage likely enables them to form annual blooms within subtropical ecosystems, resist temperature extremes, and may facilitate geographic expansion via anthropogenic transport.	[Kang, Yoonja; Taylor, Gordon T.; Gobler, Christopher J.] SUNY Stony Brook, Sch Marine & Atmospher Sci, Stony Brook, NY 11794 USA; [Tang, Ying-Zhong] Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China	State University of New York (SUNY) System; Stony Brook University; Chinese Academy of Sciences; Institute of Oceanology, CAS	Gobler, CJ (通讯作者)，SUNY Stony Brook, Sch Marine & Atmospher Sci, Stony Brook, NY 11794 USA.	christopher.gobler@stonybrook.edu	Kang, Yoonja/AAI-1725-2021; Gobler, Christopher/JOZ-2924-2023; Taylor, Gordon Thomas/A-6735-2009	Taylor, Gordon Thomas/0000-0002-6925-7571	ECOHAB [NA09NOS4780206, NA15NOS4780183]; NSF MRI grant [OCE-1336724]	ECOHAB; NSF MRI grant(National Science Foundation (NSF)NSF - Office of the Director (OD))	This study was supported by ECOHAB of NA09NOS4780206 and NA15NOS4780183. We acknowledge the Central Microscopy Imaging Center (C-MIC) at Stony Brook University, Stony Brook, New York 11794, for assistance with TEM images. We also express our gratitude to the staff of the Nano-Raman Molecular Imaging Laboratory (NARMIL), a service center of the School of Marine and Atmospheric Sciences (SoMAS) at Stony Brook University established with NSF MRI grant OCE-1336724. We also thank Jennifer Goleski for analytical assistance.	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Phycol.	FEB	2017	53	1					118	130		10.1111/jpy.12485	http://dx.doi.org/10.1111/jpy.12485			13	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	EP3CJ	27779759				2025-03-11	WOS:000397259800012
J	Yuan, H; Zhou, PL; Mei, N				Yuan, Han; Zhou, Peilin; Mei, Ning			Numerical and experimental investigation on the ballast flushing system	OCEAN ENGINEERING			English	Article						Ballast water; Sediments; Flushing; CFD	STIRRED TANKS PREDICTION; SOLID-LIQUID SUSPENSIONS; WATER MANAGEMENT; CFD SIMULATIONS; DINOFLAGELLATE CYSTS; DINOPHYCEAE; GERMINATION; SEDIMENTS; RISKS; SEA	The ballast sediments deposit not only provide the breeding ground for the survival organisms, but also affect the weight balance of the ship and even accelerate the corrosion of the ballast tank. In this work the performance of a ballast water flushing system for the 138,000 m(3) LNGC (Liquefied Natural Gas Carrier) double bottom cargo ship is studied. A simulation model of the ballast tank was made to conduct the numerical analysis. Besides, a scaled experimental setup was established on basis of the similarity principle. With different injecting velocities at the flushing inlet, the sediments distribution in the ballast tank is investigated and the energy consumption of the circulating pump is studied. The results show that by flushing the ballast water on the bottom, the sediments first accumulate at the far end, with the sediments volume fraction climbs up to 10-30%, before gradually getting removed over time. Further, higher inlet velocity leads to a more rapid decrease of average sediments proportion in the ballast tank over time, but the energy consumption in circulating pump significantly increases as well. The required power for this proposed ballast water flushing system is within the common range and thus applicable in the cargo ship.	[Yuan, Han; Mei, Ning] Ocean Univ China, Coll Engn, 238 Songling Rd, Qingdao 266100, Peoples R China; [Zhou, Peilin] Univ Strathclyde, Dept Naval Architecture & Marine Engn, Glasgow G4 0LZ, Lanark, Scotland	Ocean University of China; University of Strathclyde	Yuan, H (通讯作者)，Ocean Univ China, Coll Engn, 238 Songling Rd, Qingdao 266100, Peoples R China.	hanyuan@ouc.edu.cn	Mei, Ning/GLS-6203-2022; Yuan, Han/HKM-3093-2023	Yuan, Han/0000-0002-6521-9316	National Natural Science Foundation of China [51679225, 51276174]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	The authors acknowledge the support provided by the National Natural Science Foundation of China (NO. 51679225) and the National Natural Science Foundation of China (NO. 51276174).	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JAN 15	2017	130						188	198		10.1016/j.oceaneng.2016.12.003	http://dx.doi.org/10.1016/j.oceaneng.2016.12.003			11	Engineering, Marine; Engineering, Civil; Engineering, Ocean; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Engineering; Oceanography	EJ1WJ		Green Accepted			2025-03-11	WOS:000393000700017
J	Natsuike, M; Matsuno, K; Hirawake, T; Yamaguchi, A; Nishino, S; Imai, I				Natsuike, Masafumi; Matsuno, Kohei; Hirawake, Toru; Yamaguchi, Atsushi; Nishino, Shigeto; Imai, Ichiro			Possible spreading of toxic <i>Alexandrium tamarense</i> blooms on the Chukchi Sea shelf with the inflow of Pacific summer water due to climatic warming	HARMFUL ALGAE			English	Article						Alexandrium tamarense; Chukchi sea shelf; Climatic warming; Pacific summer water; Sea ice reduction; Spatial distribution; Temporal distribution	COASTAL WATERS; DINOPHYCEAE; LEBOUR; CYSTS; PHYTOPLANKTON; BIOGEOGRAPHY; ABUNDANCE; SEDIMENTS	A high abundance of resting cysts of the toxic dinoflagellate Alexandrium tamarense was recently reported in the vast continental shelf of the Chukchi Sea in the Arctic Ocean, suggesting that the species is widespread in the shelf. Nevertheless, little is known about the occurrence of A. tamarense vegetative cells in the water column of the arctic. Sea ice reduction and the inflow of Pacific summer water (PSW) through the Bering Strait have recently increased owing to warming in the shelf. To determine the spatial and temporal distributions of A. tamarense in the Chukchi Sea shelf and their relationship to the inflow of PSW, field samplings were conducted in the Chukchi Sea and north Bering Sea shelves three times during the summer of 2013 from July to October. Vegetative cells of A. tamarense was detected in both shelves at all sampling periods with a maximum density of 3.55 x 10(3) cells L-1. This species was also observed at the station at 73 degrees N, indicating the northernmost record of this species to date. The center of the A. tamarense distribution was between the north Bering and south Chukchi Sea shelf during the first collection period, and spread to the north Chukchi Sea shelf during the second and third collection periods. The species occurrences were mainly observed at stations affected by the PSW, especially Bering shelf water. Water structure of PSW was characterized by warmer surface and bottom water temperatures, and increased temperatures may have promoted the cell growth and cyst germination of A. tamarense. Therefore, it is suggested that an increase in the PSW inflow owing to warming promotes toxic A. tamarense occurrences on the Chukchi Sea shelf. (C) 2016 Elsevier B.V. All rights reserved.	[Natsuike, Masafumi; Hirawake, Toru; Yamaguchi, Atsushi; Imai, Ichiro] Hokkaido Univ, Grad Sch Fisheries Sci, 3-1-1 Minato Cho, Hakodate, Hokkaido 0418611, Japan; [Matsuno, Kohei] Australian Antarctic Div, 203 Channel Highway, Kingston, Tas 7050, Australia; [Nishino, Shigeto] Japan Agcy Marine Earth Sci & Technol, 2-15 Natsushima Cho, Yokosuka, Kanagawa 2370061, Japan; [Natsuike, Masafumi] Tokyo Inst Technol, Sch Environm Engn, Meguro Ku, 2-12-1-M1-4 Ookayama, Tokyo 1528552, Japan	Hokkaido University; Australian Antarctic Division; Japan Agency for Marine-Earth Science & Technology (JAMSTEC); Institute of Science Tokyo; Tokyo Institute of Technology	Natsuike, M (通讯作者)，Hokkaido Univ, Grad Sch Fisheries Sci, 3-1-1 Minato Cho, Hakodate, Hokkaido 0418611, Japan.; Natsuike, M (通讯作者)，Tokyo Inst Technol, Sch Environm Engn, Meguro Ku, 2-12-1-M1-4 Ookayama, Tokyo 1528552, Japan.	natsuike.m.aa@m.titech.ac.jp	Matsuno, Kohei/AAJ-6510-2021; Yamaguchi, Atsushi/A-8613-2012	NISHINO, Shigeto/0000-0002-0560-241X; Matsuno, Kohei/0000-0001-9793-7622; Yamaguchi, Atsushi/0000-0002-5646-3608; Hirawake, Toru/0000-0003-0274-6642	GRENE Arctic Climate Change Research Project	GRENE Arctic Climate Change Research Project	The authors thank M. Yamaguchi for advice on the manuscript as well as the crews and captains of the VS Oshoro-Maru and the R/V Mirai for assistance with field sampling. 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J	Goodman, DK				Goodman, David K.			Tabulation patterns in some fossil representatives of the dinoflagellate family Cladopyxiaceae Stein 1883	PALYNOLOGY			English	Article						Dinoflagellate; tabulation patterns; morphology	CYST	Several fossil dinoflagellates assignable to Microdinium, Histiocysta and Cladopyxidium are small, yet distinctive subspheroidal to ellipsoidal forms that share several discriminative morphological features. The epicyst is smaller than the hypocyst, and the cingulum, which is only slightly offset ventrally, is exceptionally wide. The specimens all have apical archeopyles and possess sutural features indicating a gonyaulacalean tabulation of 4', 3-5a, 7 '', 6c, 6''', 1p, 1'''', and 5-6s. However, the proportions and shapes of some plates and their relative positions differ significantly from plate relationships on other gonyaulacalean genera having similar tabulation formulas. The differences pertain mainly to the hypocyst, but on some forms modification of certain plates on the epicyst is also involved. Point-by-point comparison of comparable features emphasises the morphological similarities within this group, accentuates dissimilarities between them, and highlights the major differences between them and other fossil cysts having a similar tabulation formula. Extant cysts with a comparable tabulation are unknown.	[Goodman, David K.] Irf Grp Inc, 6721 Round Tree Dr, Anchorage, AK 99507 USA		Goodman, DK (通讯作者)，Irf Grp Inc, 6721 Round Tree Dr, Anchorage, AK 99507 USA.	theirfgroup@alaska.net						[Anonymous], 1985, SPOROPOLLENIN DINOFL; Balech E., 1967, Neotropica, V13, P105; Balech E., 1964, COMUNIC MUS ARG CS N, V1, P27; BELOW R, 1981, Palaeontographica Abteilung B Palaeophytologie, V176, P1; BELOW R, 1987, Palaeontographica Abteilung B Palaeophytologie, V206, P1; BELOW R, 1990, Palaeontographica Abteilung B Palaeophytologie, V220, P1; Clowes CD, 2013, PALYNOLOGY, V37, P316, DOI 10.1080/01916122.2013.775007; Cookson I.C., 1971, P ROY SOC VIC, V84, P217; COOKSON ISABEL C., 1960, MICROPALEONTOLOGY, V6, P1, DOI 10.2307/1484313; Dale B., 1992, OCEAN BIOCOENOSIS SE, V5, P1; Fensome R.A., 1993, Micropaleontology Press Special Paper; Goodman DK., 1979, Palynology, V3, P169; Lentin J.K., 1989, American Association of Stratigraphic Palynologists, Contributions Series, V20; MAY F E, 1980, Palaeontographica Abteilung B Palaeophytologie, V172, P10; McLean D.M., 1974, Geoscience Man, V9, P76; MCLEAN DM, 1972, J PALEONTOL, V46, P861; Slimani H, 2011, REV PALAEOBOT PALYNO, V168, P41, DOI 10.1016/j.revpalbo.2011.09.009; TAYLOR FJR, 1980, BIOSYSTEMS, V13, P65, DOI 10.1016/0303-2647(80)90006-4	18	4	4	1	1	TAYLOR & FRANCIS INC	PHILADELPHIA	530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA	0191-6122	1558-9188		PALYNOLOGY	Palynology		2017	41			1	SI		290	308		10.1080/01916122.2017.1361246	http://dx.doi.org/10.1080/01916122.2017.1361246			19	Plant Sciences; Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Paleontology	FX9TR					2025-03-11	WOS:000426450100020
J	Gao, YC; Dong, YH; Li, HT; Zhan, AB				Gao, Yangchun; Dong, Yanhong; Li, Haitao; Zhan, Aibin			Harmful non-indigenous dinoflagellate cysts in China: A review	AQUATIC ECOSYSTEM HEALTH & MANAGEMENT			English	Article; Proceedings Paper	Conference on Marine and Freshwater Invasive Species - Ecology, Impact, and Management (MFIS)	MAY 02-04, 2016	Buenos Aires, ARGENTINA	Aquat Ecosyst Hlth & Management Soc, Argentine Consejo Nacl Investigaciones Cientifica & Tecnics, Canfornav Inc		biological invasion; metabarcoding; molecular identification; morphological identification	PHYLOGENETIC-RELATIONSHIPS; ALEXANDRIUM-TAMARENSE; DINOPHYCEAE; MORPHOLOGY; DIVERSITY; SEDIMENTS; COAST; TRANSPORT; ASSAY; SEA	Harmful dinoflagellate cysts (e.g. dinocysts) represent a great threat to marine and coastal ecosystems and even human health. As dinocysts have resistant cell walls that allow dinoflagellate species to successfully survive harsh environments, they can easily pass through multiple barriers during biological invasions and successfully colonize new locations. In introduced ranges, dinocysts often serve as seeds for harmful algal blooms, which can result in large-scale environmental disasters and economic losses. Correct identification of dinocysts represents the first step for both ecological studies and management programs. However, traditional methods, which are based on morphological observations, pose great technical challenges for dinocysts. Recent advances in molecular techniques, such as high-throughput sequencing-based metabarcoding, have tremendously revolutionized our abilities to detect marine biodiversity. Here, we summarize species composition of non-indigenous/cryptogenic dinocysts and their identification methods commonly used in China, discuss major problems in traditional morphological identification and technical issues of molecular identification, and finally propose future perspectives for the efficient identification of non-indigenous dinocysts using high-throughput sequencing-based metabarcoding. We also discuss technical issues that should be addressed before high-throughput sequencing-based metabarcoding can be widely used for dinocyst identification at large geographical scales.	[Gao, Yangchun; Zhan, Aibin] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, 18 Shuangqing Rd, Beijing 100085, Peoples R China; [Gao, Yangchun; Zhan, Aibin] Univ Chinese Acad Sci, Chinese Acad Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China; [Dong, Yanhong; Li, Haitao] State Ocean Adm, South China Sea Environm Monitoring Ctr, 155 Xingang Rd West, Guangzhou 510300, Guangdong, Peoples R China	Chinese Academy of Sciences; Research Center for Eco-Environmental Sciences (RCEES); Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Zhan, AB (通讯作者)，Chinese Acad Sci, Res Ctr Ecoenvironm Sci, 18 Shuangqing Rd, Beijing 100085, Peoples R China.; Zhan, AB (通讯作者)，Univ Chinese Acad Sci, Chinese Acad Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.	zhanaibin@hotmail.com	Zhan, Aibin/A-7240-2011; 高, 养春/ITT-9176-2023		100-Talent Program of the Chinese Academy of Sciences (CAS); Key Laboratory of Environmental Biotechnology of the Chinese Academy of Sciences [Kf2013002]	100-Talent Program of the Chinese Academy of Sciences (CAS); Key Laboratory of Environmental Biotechnology of the Chinese Academy of Sciences	This work was supported by 100-Talent Program of the Chinese Academy of Sciences (CAS) to AZ and a special fund from the Key Laboratory of Environmental Biotechnology of the Chinese Academy of Sciences (Kf2013002) to HL.	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Ecosyst. Health Manag.		2017	20	4			SI		413	422		10.1080/14634988.2017.1403269	http://dx.doi.org/10.1080/14634988.2017.1403269			10	Ecology; Environmental Sciences; Marine & Freshwater Biology; Water Resources	Science Citation Index Expanded (SCI-EXPANDED); Conference Proceedings Citation Index - Science (CPCI-S)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Water Resources	FT3ZO					2025-03-11	WOS:000423091000012
J	Li, Z; Oh, SJ; Park, JW; Lim, WA; Shin, HH				Li, Zhun; Oh, Seok Jin; Park, Jong-Woo; Lim, Weol-Ae; Shin, Hyeon Ho			Cyst-motile stage relationship, morphology and phylogeny of a new chain-forming, marine dinoflagellate <i>Grammatodinium tongyeonginum gen. & sp nov</i>. from Korea	PHYCOLOGIA			English	Article						Cucumeridinium; Grammatodinium; Grammatodinium tongyeonginum; LSU rDNA; morphological characteristics; resting cyst; SSU rDNA	GYMNODINIUM-CATENATUM; MICRORETICULATE CYST; RESTING CYSTS; FLAGELLAR APPARATUS; THECA RELATIONSHIP; SEQUENCE DATA; COMB.-NOV; DINOPHYCEAE; SEDIMENTS; ULTRASTRUCTURE	A new phototrophic dinoflagellate, Grammatodinium tongyeonginum gen. & sp. nov., was established by incubating resting cysts collected from surface sediment samples from Tongyeong coastal area, Korea. The resting cysts were ovoid with a large reddish pigment body and surrounded with a thick mucous layer that incorporated attached detritus particles. The vegetative cells were 24.6-40.9 mu m long and 16.4-27.3 mu m wide. The cell surface was covered with prominent longitudinal equidistant furrows. The cingulum was narrow and descended two to eight times its width. The nucleus was located at the central part of the epicone. The peripheral chloroplasts were usually granular and yellow-green in culture and were distributed along the rim of the cingulum. The horseshoe-shaped apical groove ran from the end of the sulcal extension anticlockwise around the apex. The distal end of the apical groove was located next to the extension of the sulcus and more to the ventral side than the proximal end. Molecular phylogenetic analysis using small subunit ribosomal DNA (SSU rDNA) gene sequences revealed that G. tongyeonginum was allied with the Cucumeridinium species. Large subunit ribosomal DNA (LSU rDNA) sequences revealed that G. tongyeonginum formed a clade distantly related to the other genera of Gymnodiniales. The combination of morphological characteristics with molecular phylogenies distinguished the present species from other genera within Gymnodiniales.	[Li, Zhun; Shin, Hyeon Ho] Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea; [Oh, Seok Jin] Pukyong Natl Univ, Busan 48513, South Korea; [Park, Jong-Woo; Lim, Weol-Ae] Natl Inst Fisheries Sci, Busan 46083, South Korea	Korea Institute of Ocean Science & Technology (KIOST); Pukyong National University; National Institute of Fisheries Science	Shin, HH (通讯作者)，Korea Inst Ocean Sci & Technol, Lib Marine Samples, Geoje 53201, South Korea.	shh961121@kiost.ac.kr	LI, ZHUN/GLT-3478-2022	LI, ZHUN/0000-0001-8961-9966; Shin, Hyeon Ho/0000-0002-9711-6717	Marine Biotechnology Program - Ministry of Oceans and Fisheries of Korean Government, NIFS [PE99414]; Marine Biotechnology Program - Ministry of Oceans and Fisheries of Korean Government, KIOST [PE99414]	Marine Biotechnology Program - Ministry of Oceans and Fisheries of Korean Government, NIFS; Marine Biotechnology Program - Ministry of Oceans and Fisheries of Korean Government, KIOST	This research was supported by grants from Marine Biotechnology Program Funded by Ministry of Oceans and Fisheries of Korean Government, NIFS and KIOST (PE99414) projects	ANDERSON DM, 1988, J PHYCOL, V24, P255; Attaran-Fariman G, 2007, PHYCOLOGIA, V46, P644, DOI 10.2216/07-05.1; Balech E, 1988, DINOFLAGELADOS ATLAN; Balkis N, 2016, PHYCOLOGIA, V55, P187, DOI 10.2216/15-93.1; Bolch CJS, 1999, PHYCOLOGIA, V38, P301, DOI 10.2216/i0031-8884-38-4-301.1; Bravo I, 2006, EUR J PHYCOL, V41, P293, DOI 10.1080/09670260600810360; Darriba D, 2012, NAT METHODS, V9, P772, DOI 10.1038/nmeth.2109; Daugbjerg N, 2000, PHYCOLOGIA, V39, P302, DOI 10.2216/i0031-8884-39-4-302.1; de Salas MF, 2003, J PHYCOL, V39, P1233, DOI 10.1111/j.0022-3646.2003.03-019.x; Ellegaard M, 2003, PHYCOLOGIA, V42, P151, DOI 10.2216/i0031-8884-42-2-151.1; Ellegaard M, 1999, PHYCOLOGIA, V38, P289, DOI 10.2216/i0031-8884-38-4-289.1; Ellegaard M, 2001, PHYCOLOGIA, V40, P542, DOI 10.2216/i0031-8884-40-6-542.1; Fensome R.A., 1993, Micropaleontology Press Special Paper; Gómez F, 2015, J PHYCOL, V51, P1088, DOI 10.1111/jpy.12346; Gómez F, 2012, SYST BIODIVERS, V10, P267, DOI 10.1080/14772000.2012.721021; Gu HF, 2015, PHYCOLOGIA, V54, P49, DOI 10.2216/14-047.1; Gu HF, 2013, HARMFUL ALGAE, V28, P97, DOI 10.1016/j.hal.2013.06.001; Guindon S, 2010, SYST BIOL, V59, P307, DOI 10.1093/sysbio/syq010; Hansen G, 2000, J PHYCOL, V36, P394, DOI 10.1046/j.1529-8817.2000.99172.x; Head M.J., 1996, Palynology: Principles and Applications, P1197; Iwataki M, 2010, J EUKARYOT MICROBIOL, V57, P308, DOI 10.1111/j.1550-7408.2010.00491.x; Jeanmougin F, 1998, TRENDS BIOCHEM SCI, V23, P403, DOI 10.1016/S0968-0004(98)01285-7; Kobayashi Satoru, 2001, Phycological Research, V49, P61, DOI 10.1046/j.1440-1835.2001.00223.x; Kofoid Charles Atwood, 1921, FREE LIVING UNARMORE; KOJIMA N, 1992, REV PALAEOBOT PALYNO, V74, P239, DOI 10.1016/0034-6667(92)90009-6; Li Z, 2015, PHYCOLOGIA, V54, P566, DOI 10.2216/15-50.1; Li Z, 2015, PHYCOLOGIA, V54, P517, DOI 10.2216/15-47.1; Li Z, 2015, PHYCOLOGIA, V54, P67, DOI 10.2216/14-080.1; Li Z, 2015, J PHYCOL, V51, P204, DOI 10.1111/jpy.12252; Liu TT, 2015, PHYCOLOGIA, V54, P210, DOI 10.2216/14-94.1; LOEBLICH ALFRED R., 1968, J PALEONTOL, V42, P210; MATSUOKA K, 1985, REV PALAEOBOT PALYNO, V44, P217, DOI 10.1016/0034-6667(85)90017-X; MATSUOKA K, 1986, J PLANKTON RES, V8, P811, DOI 10.1093/plankt/8.4.811; Matsuoka K., 2000, TECHNICAL GUIDE MODE; Matsuoka K, 2009, REV PALAEOBOT PALYNO, V154, P79, DOI 10.1016/j.revpalbo.2008.12.013; Mertens KN, 2011, BOREAS, V40, P242, DOI 10.1111/j.1502-3885.2010.00193.x; ORLOVA T.Y., 2003, RUSSIAN J MARINE BIO, V29, P120; Page RDM, 1996, COMPUT APPL BIOSCI, V12, P357; Qiu DJ, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0071346; REES AJJ, 1991, PHYCOLOGIA, V30, P90, DOI 10.2216/i0031-8884-30-1-90.1; Ronquist F, 2012, SYST BIOL, V61, P539, DOI 10.1093/sysbio/sys029; Saunders GW, 1997, PLANT SYST EVOL, P237; Shin HH, 2014, HARMFUL ALGAE, V39, P175, DOI 10.1016/j.hal.2014.07.012; SOURNIA A., 1986, ATLAS PHYTOPLANCTON, VI; Takano Y, 2006, J PHYCOL, V42, P251, DOI 10.1111/j.1529-8817.2006.00177.x; TAKAYAMA H, 1985, Bulletin of Plankton Society of Japan, V32, P129; Tang YZ, 2013, J PHYCOL, V49, P1084, DOI 10.1111/jpy.12114; Taylor F.J.R., 1976, BIBLIOTHECA BOT, V132, P1; Yamaguchi A, 2005, PHYCOL RES, V53, P30	49	7	7	1	7	INT PHYCOLOGICAL SOC	LAWRENCE	NEW BUSINESS OFFICE, PO BOX 1897, LAWRENCE, KS 66044-8897 USA	0031-8884			PHYCOLOGIA	Phycologia		2017	56	4					430	443		10.2216/16-88.1	http://dx.doi.org/10.2216/16-88.1			14	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	FJ6UF					2025-03-11	WOS:000412892800008
J	Pandeirada, MS; Craveiro, SC; Daugbjerg, N; Moestrup, O; Calado, AJ				Pandeirada, Mariana S.; Craveiro, Sandra C.; Daugbjerg, Niels; Moestrup, Ojvind; Calado, Antonio J.			Studies on woloszynskioid dinoflagellates VIII: life cycle, resting cyst morphology and phylogeny of <i>Tovellia rinoi sp nov</i>. (Dinophyceae)	PHYCOLOGIA			English	Article						Dinoflagellates; Life cycle; LSU rDNA; Phylogeny; Resting cyst; Tovelliaceae	RDNA-BASED PHYLOGENY; CINCTUM-F-OVOPLANUM; LSU RDNA; SEXUAL REPRODUCTION; GEN. NOV; CRYPTOPERIDINIOPSOIDS DINOPHYCEAE; PFIESTERIA-PISCICIDA; ELECTRON-MICROSCOPY; ULTRASTRUCTURE; LIGHT	Tovellia rinoi nov. sp. is described on the basis of light microscopic and scanning electron microscopic examination of motile cells and resting cysts and the phylogenetic analysis of partial sequences of the large subunit ribosomal rRNA gene. The species was isolated from a flooded area near Aveiro, Portugal, and followed in culture through all stages of the life cycle, including formation of vegetative cells and gametes, sexual fusion, planozygote division through division cysts and the production of resting cysts. Motile cells had an ovate-conical epicone and a truncated or slightly excavated hypocone and were a little flattened dorsoventrally. Cell length was mostly 9-19 mu m, the smaller cells less pigmented and with the potential to act as gametes but also capable of vegetative multiplication. The amphiesma had three series of vesicles on the epicone, one in the cingulum and two on the hypocone and an apical line of plates (ALP) oriented almost dorsoventrally across the cell apex. One vesicle separated the ALP from the cingulum on the ventral side, two on the dorsal side. The resting cysts, showing an equatorial constriction and densely covered by hair-like spines, represented a new type within the family Tovelliaceae. The new species formed a well-supported sister group to the other Tovellia species in a LSU rDNA-derived phylogeny. Sexual fusion started with gametic contact within 'dancing groups' of small cells. The initial contact on the mid-ventral side of both gametes was often visible as a hyaline bridge, which apparently involved a globular structure protruding from the ventral ridge of one or both gametes. The two gametes in a fusing pair behaved differently, with one gamete rotating as it fused into its partner until gametic eyespots merged and the gametic longitudinal flagella assumed the position of the paired longitudinal flagella of the planozygote. Resting cysts developed from large cells morphologically identifiable as planozygotes, with cyst spines growing rapidly. Conversion of planozygotes into division cysts that produced motile cells was also observed. Germinating cysts produced regularly two motile cells, each apparently with a single longitudinal flagellum. Nuclear cyclosis was not detected at any stage of the life cycle.	[Pandeirada, Mariana S.; Craveiro, Sandra C.; Calado, Antonio J.] Univ Aveiro, Dept Biol, P-3810193 Aveiro, Portugal; [Pandeirada, Mariana S.; Craveiro, Sandra C.; Calado, Antonio J.] Univ Aveiro, GeoBioTec Res Unit, P-3810193 Aveiro, Portugal; [Daugbjerg, Niels; Moestrup, Ojvind] Univ Copenhagen, Dept Biol, Marine Biol Sect, Univ Pk 4, DK-2100 Copenhagen O, Denmark	Universidade de Aveiro; Universidade de Aveiro; University of Copenhagen	Craveiro, SC (通讯作者)，Univ Aveiro, Dept Biol, P-3810193 Aveiro, Portugal.; Craveiro, SC (通讯作者)，Univ Aveiro, GeoBioTec Res Unit, P-3810193 Aveiro, Portugal.	scraveiro@ua.pt	Pandeirada, Mariana/AAF-7448-2019; Daugbjerg, Niels/D-3521-2014; Pandeirada, Mariana Sofia/E-8803-2015; Calado, Sandra Carla/A-6791-2016; Calado, Antonio Jose/D-6263-2015	Daugbjerg, Niels/0000-0002-0397-3073; Pandeirada, Mariana Sofia/0000-0001-5061-9029; Calado, Sandra Carla/0000-0002-2738-7626; Calado, Antonio Jose/0000-0002-9711-0593	program POCH (Programa Operacional Capital Humano) [SFRH/BD/109016/2015]; program QREN [SFRH/BPD/68537/2010]; POPH; Formacao Avancada; European Social Funding (FSE); Portuguese Ministry of Education and Science (MEC); GeoBioTec [UID/GEO/04035/2013]; Fundação para a Ciência e a Tecnologia [SFRH/BD/109016/2015] Funding Source: FCT	program POCH (Programa Operacional Capital Humano); program QREN; POPH; Formacao Avancada; European Social Funding (FSE)(European Social Fund (ESF)); Portuguese Ministry of Education and Science (MEC); GeoBioTec; Fundação para a Ciência e a Tecnologia(Fundacao para a Ciencia e a Tecnologia (FCT))	M.S.P. and S.C.C. were supported by grants SFRH/BD/109016/2015 and SFRH/BPD/68537/2010, respectively, from the financing programs POCH (Programa Operacional Capital Humano) and QREN, POPH, Tipologia 4.1, Formacao Avancada, and by the European Social Funding (FSE) and the Portuguese Ministry of Education and Science (MEC). GeoBioTec (UID/GEO/04035/2013) supported this project. For molecular work we used the facilities at the Laboratory of Molecular Studies for Marine Environments (LEMAM), Univ. Aveiro, Portugal.	Accoroni S, 2014, HARMFUL ALGAE, V34, P7, DOI 10.1016/j.hal.2014.02.003; BHAUD Y, 1988, J CELL SCI, V89, P197; Bibby B.T., 1972, British phycol J, V7, P85; Bravo Isabel, 2014, Microorganisms, V2, P11; Calado AJ, 2006, J PHYCOL, V42, P434, DOI 10.1111/j.1529-8817.2006.00195.x; Calado AJ, 2011, PHYCOLOGIA, V50, P641, DOI 10.2216/11-21.1; CHRISTEN H. 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J	Grigorszky, I; Kiss, TK; Pór, G; Dévai, G; Nagy, AS; Somlyai, I; Berta, C; Duleba, M; Trábert, Z; Acs, E				Grigorszky, Istvan; Kiss, Tihamer Keve; Por, Gabriella; Devai, Gyorgy; Nagy, Alex Sandor; Somlyai, Imre; Berta, Csaba; Duleba, Monika; Trabert, Zsuzsa; Acs, Eva			Temperature and growth strategies as the essential factors influencing the occurrence of <i>Stephanodiscus minutulus</i> (Kutzing) Cleve & Moller and <i>Palatinus apiculatus</i> (Ehrenberg) Craveiro, Calado, Daugbjerg & Moestrup	FUNDAMENTAL AND APPLIED LIMNOLOGY			English	Article; Proceedings Paper	10th Central European Diatom Meeting (CE-DiatoM)	APR 20-23, 2016	Budapest, HUNGARY	MTA Ctr Ecol Res, Hungarian Nat Hist Mus		life cycle; Stephanodiscus minutulus; Palatinus apiculatus; spring bloom; excystment; encystment	LIFE-CYCLE; SEASONAL SUCCESSION; BLOOM FORMATION; ICE ALGAE; PHYTOPLANKTON; DIATOMS; ASSEMBLAGES; GERMINATION; ENCYSTMENT; DYNAMICS	The life cycle of diatoms and dinoflagellates enables them to produce interannually varying dominances. This variability results from life -cycle interactions, physical conditions, and inter-species competition for nutrients and light. In particular, the overall dominant species of the year can be linked to the abundances of resting stages and temperature in spring. The aim of this study was to investigate the effects of temperature and life cycle as biotic factors on spring phytoplankton blooms caused by Stephanodiscus minutulus (Ktitzing) Cleve & Moller and Palatinus apiculatus (Ehrenberg) Craveiro, Calado, Daugbjerg & Moestrup, in a Hungarian shallow backwater. The composition of plankton communities exhibited a marked interannual heterogeneity. Our results suggested that a slight decrease in temperature in spring favours a spring bloom of vegetative dinoflagellates before encystment begins. However, a rapid increase in temperature results in high abundances of dinoflagellate cysts, which, in turn, leads to the dominance of diatoms. In this case, encystment starts before a pronounced dinoflagellate spring bloom is established.	[Grigorszky, Istvan; Devai, Gyorgy; Nagy, Alex Sandor; Somlyai, Imre; Berta, Csaba] Univ Debrecen, Dept Hydrobiol, Egyet Ter 1, H-4032 Debrecen, Hungary; [Grigorszky, Istvan; Kiss, Tihamer Keve; Duleba, Monika; Trabert, Zsuzsa; Acs, Eva] Hungarian Acad Sci, Danube Res Inst, Ctr Ecol Res, Karolina Ut 29-31, H-1113 Budapest, Hungary; Paterson Johal Consulting, 203 B-10190 152A St, Surrey, BC V3A 1M8, Canada	University of Debrecen; HUN-REN; HUN-REN Centre for Ecological Research; Danube Research Institute; Hungarian Academy of Sciences	Grigorszky, I (通讯作者)，Univ Debrecen, Dept Hydrobiol, Egyet Ter 1, H-4032 Debrecen, Hungary.; Grigorszky, I (通讯作者)，Hungarian Acad Sci, Danube Res Inst, Ctr Ecol Res, Karolina Ut 29-31, H-1113 Budapest, Hungary.	grigorszky.istvan@science.unideb.hu	Csaba, Berta/AES-0541-2022; Ács, Éva/J-3252-2014; István, Grigorszky/Q-2245-2019	Somlyai, Imre/0009-0009-0379-4196	MOB-WATER-LAB [HURO/1101/142/1.3.2]	MOB-WATER-LAB	We would like to thank the two anonymous reviewers for their suggestions and comments. The study was financial supported by HURO/1101/142/1.3.2, MOB-WATER-LAB.	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Appl. Limnol.	JAN	2017	189	2			SI		167	175		10.1127/fal/2016/0941	http://dx.doi.org/10.1127/fal/2016/0941			9	Limnology; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED); Conference Proceedings Citation Index - Science (CPCI-S)	Marine & Freshwater Biology	EM3OC		Green Accepted			2025-03-11	WOS:000395223500007
J	Nicholls, KH				Nicholls, Kenneth H.			Introduction to the biology and ecology of the freshwater cryophilic dinoflagellate <i>Woloszynskia pascheri</i> causing red ice	HYDROBIOLOGIA			English	Article						Woloszynskia pascheri; Freshwater red tide; Cryophilic; Psychrophily; Red ice; Extreme cold tolerance	LOW-TEMPERATURE RESISTANCE; SP-NOV DINOPHYCEAE; LAKE TOVEL; LIGHT; ULTRASTRUCTURE; GYMNODINIUM; PHYLOGENY; DIVERSITY; GEN.; ONTARIO	The rarely reported red pigmented dinoflagellate, Woloszynskia pascheri, is described from frozen surface waters in Ontario, Canada. New information based on light microscopy (LM) is provided on cell organelles (dinokaryon, chromosomes, pigment droplets and ectoplasmic vesicular layer), the thin-walled ice-bound pellicle cysts and thick-walled summer resting cysts. An earlier published suggestion that W. pascheri has morphology similar to that of Gymnodinium cryophilum (Wedemayer, Wilcox et Graham) G. Hansen et Moestrup is refuted. The process of red ice formation depends on a number of weather-related and other environmental factors. The most important of these being a mid-winter thaw that creates pathways (cracks and melted areas of ice) for passage of swimming cells from the water underlying the ice to water on the surface of the ice. In thin-walled ice-bound pellicle cysts, W. pascheri remained viable at ambient air temperatures lower than -20A degrees C for several days and suggests a unique biochemical physiology that needs research. A summary of the historical classification of this species reveals a tumultuous past and the continuing assignment of this species within the genus Woloszynskia appears doubtful, given the rapidly improving state of knowledge about the fine structure and molecular biology of many other similar species.	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J	Park, TG; Kim, JJ; Kim, WJ; Won, KM				Park, Tae Gyu; Kim, Jin Joo; Kim, Won Jin; Won, Kyoung Mi			Development of real-time RT-PCR for detecting viable <i>Cochlodinium polykrikoides</i> (Dinophyceae) cysts in sediment	HARMFUL ALGAE			English	Article						Cochlodinium polykrikoides; Cyst; Dinoflagellate; Real-time RT-PCR; Red tide	POLYMERASE-CHAIN-REACTION; RED TIDE DINOFLAGELLATE; KOREAN COASTAL WATERS; MARINE-SEDIMENTS; HARMFUL DINOFLAGELLATE; ALEXANDRIUM-TAMARENSE; PFIESTERIA-PISCICIDA; PHYLOGENETIC-RELATIONSHIPS; ENVIRONMENTAL-SAMPLES; MARGALEF DINOPHYCEAE	Morphological observations have confirmed that cysts are produced by dinoflagellates. However, finding a seed bed or unknown cysts in field samples by microscopy is extremely time consuming. Real-time PCR has been used to facilitate the detection of dinoflagellate cysts in sediment. However, DNA from dead vegetative cells remaining on the surface sediment may persist for a long period of time, which can cause false positive DNA detection. In this study, a non-quantitative RNA targeted probe using real-time RT-PCR was developed for detection of viable cysts in sediment. Large-subunit rRNA was used to develop a species-specific RNA targeted probe for the ichthyotoxic dinoflagellate Cochlodinium polykrikoides. The sediment samples were sieved and incubated at 30 degrees C for 3 h prior to RNA extraction to remove RNA from dead cells remaining in the sediment. Nested-PCR was conducted to maximize assay sensitivity. A field survey to determine the distribution of cysts at 155 sampling stations in the western and southern part of the Korean peninsula showed that C polykrikoides cysts were detected at five sampling stations. (C) 2016 Elsevier B.V. All rights reserved.	[Park, Tae Gyu; Kim, Jin Joo; Kim, Won Jin; Won, Kyoung Mi] Natl Inst Fisheries Sci, Southeast Sea Fisheries Res Inst, Tongyeong 650943, South Korea	National Institute of Fisheries Science	Park, TG (通讯作者)，Natl Inst Fisheries Sci, Southeast Sea Fisheries Res Inst, Tongyeong 650943, South Korea.	taegyupark@korea.kr			National Institute of Fisheries Science [R2016046]	National Institute of Fisheries Science	We thank Drs. Mi Seon Park and Won Duk Yoon of the NIFS for their valuable comments and suggestions. We also thank Drs. Jong Woo Park and Seung Min Lee of the NIFS for the sediment samples from Yeosu and the Yellow Sea. This study was funded by a grant from the National Institute of Fisheries Science (R2016046).	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J	Yamaguchi, A; Yoshimatsu, S; Hoppenrath, M; Wakeman, KC; Kawai, H				Yamaguchi, Aika; Yoshimatsu, Sadaaki; Hoppenrath, Mona; Wakeman, Kevin C.; Kawai, Hiroshi			Molecular Phylogeny of the Benthic Dinoflagellate Genus <i>Amphidiniopsis</i> and its Relationships with the Family Protoperidiniaceae	PROTIST			English	Article						Amphidiniopsis; Archaeperidinium; Herdmania; heterotrophic dinoflagellate; molecular phylogeny; Protoperidiniaceae	SP-NOV DINOPHYCEAE; CYST-THECA RELATIONSHIP; SAND-DWELLING DINOFLAGELLATE; EMENDED DESCRIPTION; HETEROTROPHIC DINOFLAGELLATE; HERDMANIA-LITORALIS; PERIDINIALES; MORPHOLOGY; ULTRASTRUCTURE; TAXONOMY	The genus Amphidiniopsis is a benthic (sand-dwelling) lineage of thecate dinoflagellates, containing 19 morphologically diverse species. Past work has shown that some Amphidiniopsis species form a Glade with the sand-dwelling Herdmania litoralis as well as some planktonic species in the family Protoperidiniaceae (i.e. the Monovela group). Still, our contemporary knowledge regarding Amphidiniopsis is limited, compared to the Protoperidiniaceae. To this end, we obtained 18S rDNA data from seven Amphidiniopsis species and a part of the 28S rDNA from four Amphidiniopsis species, with the goal of improving our understanding of phylogenetic relationships among Amphidiniopsis and the Monovela group. Results from the molecular phylogenetic analyses showed that Amphidiniopsis spp., with the exception of A. cf. arenaria, H. litoralis, and members within the Monovela group formed a single Glade. Within the Glade, relationships among Amphidiniopsis spp. and the Monovela group were more complicated - some subclades contained both representatives of Amphidiniopsis and the Monovela group. Our study suggests that habitat (benthic or planktonic), as well as traditionally used, general morphological characteristics, do not reflect molecular phylogenetic relationships, and that the taxonomy of the sand-dwelling genus Amphidiniopsis, and the planktonic family Protoperidiniaceae, should be reconsidered simultaneously. (C) 2016 Elsevier GmbH. All rights reserved.	[Yamaguchi, Aika; Kawai, Hiroshi] Kobe Univ, Res Ctr Inland Seas, Kobe, Hyogo 6578501, Japan; [Yoshimatsu, Sadaaki] 2298-28 Yashima Nishimachi, Takamatsu, Kagawa 7610113, Japan; [Hoppenrath, Mona] Senckenberg Meer, German Ctr Marine Biodivers Res, Sudstrand 44, D-26382 Wilhelmshaven, Germany; [Wakeman, Kevin C.] Hokkaido Univ, Fac Sci, Dept Biol Sci, North 10,West 8, Sapporo, Hokkaido 0600810, Japan	Kobe University; Leibniz Association; Senckenberg Gesellschaft fur Naturforschung (SGN); Hokkaido University	Yamaguchi, A (通讯作者)，Kobe Univ, Res Ctr Inland Seas, Kobe, Hyogo 6578501, Japan.	aika@harbor.kobe-u.ac.jp	Wakeman, Kevin/P-8827-2019	Wakeman, Kevin/0000-0003-3501-7702	Supporting Positive Activities for Female Researchers on 'Revolution! Female Researcher Training "Kobe Style"' at Kobe University - Japan Science and Technology Agency, Japan	Supporting Positive Activities for Female Researchers on 'Revolution! Female Researcher Training "Kobe Style"' at Kobe University - Japan Science and Technology Agency, Japan	This work was supported by Supporting Positive Activities for Female Researchers on 'Revolution! Female Researcher Training "Kobe Style"' at Kobe University financed by Japan Science and Technology Agency, Japan.	Abe T. H., 1981, PUBLICATIONS SETO MA, V6, P1; Abe T. 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J	Klouch, ZK; Caradec, F; Plus, M; Hernández-Fariñas, T; Pineau-Guillou, L; Chapelle, A; Schmitt, S; Quéré, J; Guillou, L; Siano, R				Klouch, Z. K.; Caradec, F.; Plus, M.; Hernandez-Farinas, T.; Pineau-Guillou, L.; Chapelle, A.; Schmitt, S.; Quere, J.; Guillou, L.; Siano, R.			Heterogeneous distribution in sediments and dispersal in waters of <i>Alexandrium minutum</i> in a semi-enclosed coastal ecosystem	HARMFUL ALGAE			English	Article							TIME PCR ASSAY; RESTING CYSTS; SURFACE SEDIMENTS; DINOFLAGELLATE CYSTS; EXTRACELLULAR DNA; BREST FRANCE; BAY; BLOOMS; TAMARENSE; DYNAMICS	Within the framework of research aimed at using genetic methods to evaluate harmful species distribution and their impact on coastal ecosystems, a portion of the ITS1rDNA of Alexandrium minutum was amplified by real-time PCR from DNA extracts of superficial (1-3 cm) sediments of 30 subtidal and intertidal stations of the Bay of Brest (Brittany, France), during the winters of 2013 and 2015. Cell germinations and rDNA amplifications of A. minutum were obtained for sediments of all sampled stations, demonstrating that the whole bay is currently contaminated by this toxic species. Coherent estimations of ITS1rDNA copy numbers were obtained for the two sampling cruises, supporting the hypothesis of regular accumulation of A. minutum resting stages in the south-eastern, more confined embayments of the study area, where fine-muddy sediments are also more abundant. Higher ITS1rDNA copy numbers were detected in sediments of areas where blooms have been seasonally detected since 2012. This result suggests that specific genetic material estimations in superficial sediments of the bay may be a proxy of the cyst banks of A. minutum. The simulation of particle trajectory analyses by a Lagrangian physical model showed that blooms occurring in the south-eastern part of the bay are disconnected from those of the north-eastern zone. The heterogeneous distribution of A. minutum inferred from both water and sediment suggests the existence of potential barriers for the dispersal of this species in the Bay of Brest and encourages finer analyses at the population level for this species within semi-enclosed coastal ecosystems. (C) 2016 Elsevier B.V. All rights reserved.	[Klouch, Z. K.; Caradec, F.; Plus, M.; Hernandez-Farinas, T.; Chapelle, A.; Schmitt, S.; Quere, J.; Siano, R.] IFREMER, DYNECO PELAGOS, Ctr Brest, F-29280 Plouzane, France; [Klouch, Z. K.; Hernandez-Farinas, T.; Guillou, L.] Sorbonne Univ, UPMC Univ Paris 6, Stn Biol Roscoff,CNRS, Adaptat & Diversite Milieu Marin UMR 7144,Equipe, Pl Georges Teissier,CS90074, F-29688 Roscoff, France; [Pineau-Guillou, L.] IFREMER, Ctr Brest, LOPS OC, F-29280 Plouzane, France	Ifremer; Centre National de la Recherche Scientifique (CNRS); Sorbonne Universite; Ifremer	Siano, R (通讯作者)，IFREMER, DYNECO PELAGOS, Ctr Brest, F-29280 Plouzane, France.	raffaele.siano@ifremer.fr	Hernández-Fariñas, Tania/G-6550-2014; Plus, Martin/KII-5441-2024; Pineau-Guillou, Lucia/L-7883-2015	HERNANDEZ FARINAS, Tania/0000-0002-8453-7096; Pineau-Guillou, Lucia/0000-0001-8175-1735; Plus, Martin/0000-0001-9913-4233; Guillou, Laure/0000-0003-1032-7958	DAOULEX project - Region Bretagne; Ifremer; ECosphere Continentale et COtiere (EC2CO) initiative of the Institut National des Sciences de l'Univers/Centre National de la Recherche Scientifique (INSU/CNRS): PALMITO; Region Bretagne (Allocation de REcherche Doctorale (ARED) fellowship)	DAOULEX project - Region Bretagne; Ifremer; ECosphere Continentale et COtiere (EC2CO) initiative of the Institut National des Sciences de l'Univers/Centre National de la Recherche Scientifique (INSU/CNRS): PALMITO; Region Bretagne (Allocation de REcherche Doctorale (ARED) fellowship)	This work was financed by the DAOULEX project supported by the Region Bretagne. This research was carried out within the framework of K. Klouch's PhD funded by Ifremer and Region Bretagne (Allocation de REcherche Doctorale (ARED) fellowship) and by the project of the ECosphere Continentale et COtiere (EC2CO) initiative of the Institut National des Sciences de l'Univers/Centre National de la Recherche Scientifique (INSU/CNRS): PALMITO (2013-2015). The authors wish to thank all colleagues who helped with sample collection and Xavier Caisey for scuba diving sampling assistance. We wish to thank Dominique Hervio-Heath and members of the SG2M/LSEM laboratory of Ifremer for access to their laboratory facilities and all their technical suggestions. Pierre Bodenes is acknowledged for collaborating in the picture developments and Pascale Malestroit for helping with culture maintenance. This research falls within the scope of the French GDR (Groupement de Recherche) Phycotox (http://www.phycotox.fr) (2012-2018) on harmful microalgae and phycotoxins. 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J	Dhib, A; Fertouna-Bellakhal, M; Turki, S; Aleya, L				Dhib, Amel; Fertouna-Bellakhal, Mouna; Turki, Souad; Aleya, Lotfi			Driving factors of dinoflagellate cyst distribution in surface sediments of a Mediterranean lagoon with limited access to the sea	MARINE POLLUTION BULLETIN			English	Article						Dinoflagellate cysts; Phytoplankton; Abiotic factors; Ghar El Melh lagoon	HARMFUL ALGAL BLOOMS; NORTHWESTERN INDIAN-OCEAN; RESTING CYSTS; SPATIAL-DISTRIBUTION; BIZERTE LAGOON; ALEXANDRIUM-CATENELLA; ESTUARINE SEDIMENTS; VEGETATIVE CELLS; RUPPIA-CIRRHOSA; BENTHIC CYSTS	Seasonal distribution of dinoflagellate cysts were studied at five surface sediment study stations in Ghar El Melh Lagoon (GML) (Tunisia) in relation to physicochemical parameters and phytoplankton abundance in the water column. At least sixteen dinocyst types were identified, dominated mainly by Protoperidinium spp., Scrippsiella trochoidea complex, Lingulodinum machaerophorum, Alexandrium spp. and Gymnodinium spp., along with many round brown cysts. Cyst abundance ranged from 0 to 229 g(-1) dry sediment. No significant differences in cyst distribution were found among stations, though a significant variation was observed among seasons with cyst dominance in autumn. No significant variation was found between cyst abundance and the different abiotic factors monitored, neither in the water column (physicochemical parameters) nor in the sediment (% H2O). Low dinocyst abundance was consistent with the dominance of non-cyst-forming dinoflagellates in the GML water column. (C) 2016 Elsevier Ltd. All rights reserved.	[Dhib, Amel; Fertouna-Bellakhal, Mouna; Aleya, Lotfi] Univ Bourgogne Franche Comte, Lab Chronoenvironm, UMR CNRS 6249, Besancon, France; [Dhib, Amel; Fertouna-Bellakhal, Mouna; Turki, Souad] INSTM, Lab Milieu Marin, Ctr Goulette, Tunis, Tunisia; [Fertouna-Bellakhal, Mouna] Inst Super Peche & Aquaculture Bizerte, Unite Rech Exploitat Milieux Aquat, Errimel, Bizerte, Tunisia; [Fertouna-Bellakhal, Mouna] Fac Sci Bizerte, Bizerte, Tunisia	Universite de Franche-Comte; Institut National des Sciences et Technologies de la Mer; Universite de Carthage	Aleya, L (通讯作者)，Univ Bourgogne Franche Comte, Lab Chronoenvironm, UMR CNRS 6249, Besancon, France.	lotfi.aleya@univ-fcomte.fr						Abdenadher M, 2012, ESTUAR COAST SHELF S, V106, P102, DOI 10.1016/j.ecss.2012.04.029; Abid F, 2008, ESTUAR COAST SHELF S, V80, P391, DOI 10.1016/j.ecss.2008.09.007; ANDERSON DM, 1987, LIMNOL OCEANOGR, V32, P340, DOI 10.4319/lo.1987.32.2.0340; Anderson DM, 2002, ESTUARIES, V25, P704, DOI 10.1007/BF02804901; ANDERSON DM, 1982, LIMNOL OCEANOGR, V27, P757, DOI 10.4319/lo.1982.27.4.0757; ANDERSON DM, 1978, J PHYCOL, V14, P224, DOI 10.1111/j.1529-8817.1978.tb02452.x; Anderson Donald M., 1997, Limnology and Oceanography, V42, P1009; Anglès S, 2010, DEEP-SEA RES PT II, V57, P210, DOI 10.1016/j.dsr2.2009.09.002; [Anonymous], THESIS; [Anonymous], 1996, HARMFUL TOXIC ALGAL; [Anonymous], HARMFUL ALGAE NEWS; [Anonymous], LIST WETL INT IMP; APHA A. 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Pollut. Bull.	NOV 15	2016	112	1-2					303	312		10.1016/j.marpolbul.2016.08.002	http://dx.doi.org/10.1016/j.marpolbul.2016.08.002			10	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	DZ9IQ	27502361				2025-03-11	WOS:000386188900045
J	Neubauer, EF; Poole, AZ; Weis, VM; Davy, SK				Neubauer, Emilie F.; Poole, Angela Z.; Weis, Virginia M.; Davy, Simon K.			The scavenger receptor repertoire in six cnidarian species and its putative role in cnidarian-dinoflagellate symbiosis	PEERJ			English	Article						CD36; Aiptasia; CTLD; Sea anemone; Coral symbiosis; SRCR; Innate immunity; Coral; Scavenger receptor; Symbiodinium	IMMUNE GENE REPERTOIRE; C-TYPE LECTINS; B TYPE-I; TRANSCRIPTOME ANALYSIS; INNATE IMMUNITY; PROTEIN; RECOGNITION; ANCIENT; GENOME; DOMAIN	Many cnidarians engage in a mutualism with endosyrnbiotic photosynthetic dino-flagellates that forms the basis of the coral reef ecosystem. Interpartner interaction and regulation includes involvement of the host innate irnmune system. Basal metazoans, including cnidarians have diverse and complex innate immune repertoires that are just beginning to be described. Scavenger receptors (SR) area diverse superfarruly of innate immunity genes that. recognize microbes. The a broad array of microbial hgands and participate in phagocytosis of invading crobes. The superfarnily includes subclades named SR-A through SR-I that are categorized based on the arrangement of sequence domains including the scavenger receptor cysteine rich (SRCR), the C-type lectin (CTLD) and the CD36 domains. Previous fiinctional and gene expression studies on cnidarian-dinoflagellate symbiosis have implicated SR-like proteins in interpartner communication and regulation. IIn this study, we characterized the SR repertoire from a combination of genomic and Itranscriptomic resources from six l cnidarian species n the Class Anthozoa. We combined these bioinformatic analyses with functional experiments using the SR inhibitor fucoidan Ito explore a role fort SRs in cnidarian symbiosis and immunity. Bioinformatic searches revealed a large diversity of SR like genes that resembled SR-As, SR-Bs, SR-Es and SR-Is. SRCRs, CTLDs and CD36 domains were identified in multiple sequences in combinations that were highly homologous to vertebrate SRs as well as in proteins with novel domain combinations. Phylogenetic analyses of CD36 domains of the SR-B-like sequences from a diversity of metazoans grouped cnidarian with bilaterian sequences separate from other basal metazoans. All cnidarian sequences grouped together with moderate support in a subclade separately from bilaterian sequences. Functional experiments were carried out on the sea anemone Aiptasia pallida that engages in a symbiosis with Symbiodinium minutum (clade B1). Experimental blocking of the SR ligand binding site with the inhibitor fucoidan reduced the ability of S. minutum Ito colonize A. pallida suggesting that host SRs play a role in host-symbiont recognition. In addition, incubation of symbiotic anemones with fucoidan elicited an immune response, indicating that host SRs function in immune modulation that results in host tolerance of the symbionts.	[Neubauer, Emilie F.; Davy, Simon K.] Victoria Univ Wellington, Sch Biol Sci, Wellington, New Zealand; [Poole, Angela Z.] Western Oregon Univ, Dept Biol, Monmouth, OR USA; [Weis, Virginia M.] Oregon State Univ, Dept Integrat Biol, Corvallis, OR 97331 USA	Victoria University Wellington; Western Oregon University; Oregon State University	Weis, VM (通讯作者)，Oregon State Univ, Dept Integrat Biol, Corvallis, OR 97331 USA.	weis@oregolistate.edu	Weis, Virginia/T-5095-2019	Weis, Virginia/0000-0002-1826-2848; Detournay, Olivier/0009-0003-4965-438X; Davy, Simon/0000-0003-3584-5356	National Science Foundation [IOB0919073]; Commonwealth Doctoral Scholarship; Faculty of Science Strategic Research Grant from Victoria University of Wellington	National Science Foundation(National Science Foundation (NSF)); Commonwealth Doctoral Scholarship; Faculty of Science Strategic Research Grant from Victoria University of Wellington	This work was partially supported by a grant from the National Science Foundation to VMW (IOB0919073). EFN was supported by a Commonwealth Doctoral Scholarship and a Faculty of Science Strategic Research Grant from Victoria University of Wellington. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.	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J	Gu, HF; Mertens, KN; Liu, TT				Gu, Haifeng; Mertens, Kenneth N.; Liu, Tingting			<i>Huia caspica</i> gen. & comb. nov., a dinoflagellate species that recently crossed the marine-freshwater boundary	PHYCOLOGICAL RESEARCH			English	Article						cyst-theca relationship; diplopsalioideans; Diplopsalis caspica; Glenodinium caspica; LSU rDNA	CYST-THECA RELATIONSHIP; OBLEA-ROTUNDA DIPLOPSALIDACEAE; PHYLOGENETIC POSITIONS; ADAPTIVE EVOLUTION; MIXED MODELS; DINOPHYCEAE; PERIDINIALES; GENERA; PROTOPERIDINIUM; ULTRASTRUCTURE	The dinoflagellate subfamily Diplopsalidoideae encompasses 11 genera whose plate patterns show a large diversity. In a recently published molecular phylogeny (Liu et al. 2015) some of these genera (e.g. Diplopsalis, Diplopelta) are polyphyletic, suggesting that further subdivision of these genera is needed. Here we established the cyst-theca relationship of Diplopsalis caspica by incubating cysts collected from the East China Sea. Cells of D. caspica display a plate formula of Po, X, 3', 1a, 6 '', 3c+t, ?4s, 5''', 1 '''', characterized by a small, parallelogrammic anterior intercalary plate (1a) located in the middle of the dorsal part of the epitheca. The cysts are spherical and smooth-walled with a theropylic archeopyle. In addition, we obtained four large subunit ribosomal DNA (LSU rDNA) sequences from the germinated motile cells by single-cell polymerase chain reaction. Strains of D. caspica from the marine environment of the East China Sea differ at 0-2 positions of LSU rDNA sequences from that of lacustrine strains from NE China. In the molecular phylogeny, D. caspica was close to Lebouraia pusilla but distant from D. lenticula, the type species of Diplopsalis. Our results support the systematic importance of plate 1a, and therefore D. caspica was transferred to a new genus, Huia. The conservative LSU rDNA sequences in H. caspica suggest that the marine-freshwater transition occurred recently.	[Gu, Haifeng; Liu, Tingting] Third Inst Oceanog, Dept Marine Biol & Ecol, Xiamen, Peoples R China; [Mertens, Kenneth N.] IFREMER, LER BO, Stn Biol Marine, Concarneau, France	Third Institute of Oceanography, Ministry of Natural Resources; Ifremer	Gu, HF (通讯作者)，Third Inst Oceanog, Dept Marine Biol & Ecol, Xiamen, Peoples R China.	guhaifeng@tio.org.cn	Mertens, Kenneth/AAO-9566-2020; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Gu, Haifeng/0000-0002-2350-9171; Mertens, Kenneth/0000-0003-2005-9483	National Natural Science Foundation of China [41376170, 41306171]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This project was supported by National Natural Science Foundation of China (41376170, 41306171).	Abe T. H., 1941, REC OCEAN OGR WORKS JAPAN, V12, P121; Abe T. 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OCT	2016	64	4					251	258		10.1111/pre.12146	http://dx.doi.org/10.1111/pre.12146			8	Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Marine & Freshwater Biology	EC7GK		Green Published			2025-03-11	WOS:000388304700006
J	Ichinomiya, M; dos Santos, AL; Gourvil, P; Yoshikawa, S; Kamiya, M; Ohki, K; Audic, S; de Vargas, C; Noël, MH; Vaulot, D; Kuwata, A				Ichinomiya, Mutsuo; dos Santos, Adriana Lopes; Gourvil, Priscillia; Yoshikawa, Shinya; Kamiya, Mitsunobu; Ohki, Kaori; Audic, Stephane; de Vargas, Colomban; Noel, Mary-Helene; Vaulot, Daniel; Kuwata, Akira			Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms	ISME JOURNAL			English	Article							NEWLY DISCOVERED CYSTS; OYASHIO REGION; LIFE-CYCLE; SILICEOUS NANOPLANKTON; GROWTH-CHARACTERISTICS; REFERENCE DATABASE; MARINE; CHRYSOPHYCEAE; COMMUNITY; ABUNDANCE	Bolidomonas is a genus of picoplanktonic flagellated algae that is closely related to diatoms. Triparma laevis, a species belonging to the Parmales, which are small cells with a siliceous covering, has been shown to form a monophyletic group with Bolidomonas. We isolated several novel strains of Bolidophyceae that have permitted further exploration of the diversity of this group using nuclear, plastidial and mitochondrial genes. The resulting phylogenetic data led us to formally emend the taxonomy of this group to include the Parmales within the Bolidophyceae, to combine Bolidomonas within Triparma and to define a novel species, Triparma eleuthera sp. nov. The global distribution of Bolidophyceae was then assessed using environmental sequences available in public databases, as well as a large 18S rRNA V9 metabarcode data set from the Tara Oceans expedition. Bolidophyceans appear ubiquitous throughout the sampled oceans but always constitute a minor component of the phytoplankton community, corresponding to at most similar to 4% of the metabarcodes from photosynthetic groups (excluding dinoflagellates). They are similar to 10 times more abundant in the small size fraction (0.8-5 mu m) than in larger size fractions. T. eleuthera sp. nov. constitutes the most abundant and most widespread operational taxonomic unit (OTU) followed by T. pacifica, T. mediterranea and the T. laevis clade. The T. mediterranea OTU is characteristic of Mediterranean Sea surface waters and the T. laevis clade OTU is most prevalent in colder waters, in particular off Antarctica.	[Ichinomiya, Mutsuo] Prefectural Univ Kumamoto, Kumamoto, Japan; [dos Santos, Adriana Lopes; Gourvil, Priscillia; Audic, Stephane; de Vargas, Colomban; Vaulot, Daniel] UPMC Univ Paris 06, Sorbonne Univ, CNRS, UMR 7144,Stn Biol Roscoff, Roscoff, France; [Yoshikawa, Shinya; Kamiya, Mitsunobu; Ohki, Kaori] Fukui Prefectural Univ, Obama, Fukui, Japan; [Noel, Mary-Helene] Natl Inst Environm Studies, Tsukuba, Ibaraki, Japan; [Kuwata, Akira] Fisheries Res Agcy, Tohoku Natl Fisheries Res Inst, 3-27-5 Shinhama Cho, Shiogama, Miyagi 9850001, Japan	Centre National de la Recherche Scientifique (CNRS); CNRS - Institute of Ecology & Environment (INEE); Sorbonne Universite; Fukui Prefectural University; National Institute for Environmental Studies - Japan; Japan Fisheries Research & Education Agency (FRA)	Kuwata, A (通讯作者)，Fisheries Res Agcy, Tohoku Natl Fisheries Res Inst, 3-27-5 Shinhama Cho, Shiogama, Miyagi 9850001, Japan.	akuwata@affrc.go.jp	Vaulot, Daniel/T-6649-2019; Kuwata, Akira/E-1121-2013; GOURVIL, PRISCILLIA/AAM-3903-2020; Lopes dos Santos, Adriana/B-7252-2018	Kamiya, Mitsunobu/0000-0002-2343-5547; Gourvil, Priscillia/0000-0003-0408-4988; Lopes dos Santos, Adriana/0000-0002-0736-4937; de Vargas, Colomban/0000-0002-6476-6019; Vaulot, Daniel/0000-0002-0717-5685	Japan Society for the Promotion of Science (JSPS) [22657027, 23370046, 26291085, 15K14784]; Canon Foundation; Core Research for Evolutional Science and Technology from Japan Science and Technology; European Union program MicroB3 [287589]; French 'Investissements d'Avenir' program OCEANOMICS [ANR-11-BTBR-0008]; French 'Investissements d'Avenir' program EMBRC-France; European Union program MaCuMBA [FP7-KBBE-2012-6-311975]; Grants-in-Aid for Scientific Research [16K07489, 26291085, 15K07194, 22657027, 15K14784, 23370046] Funding Source: KAKEN	Japan Society for the Promotion of Science (JSPS)(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science); Canon Foundation(Canon Foundation); Core Research for Evolutional Science and Technology from Japan Science and Technology; European Union program MicroB3; French 'Investissements d'Avenir' program OCEANOMICS(Agence Nationale de la Recherche (ANR)); French 'Investissements d'Avenir' program EMBRC-France(Agence Nationale de la Recherche (ANR)); European Union program MaCuMBA; Grants-in-Aid for Scientific Research(Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI))	We thank Masanobu Kawachi for help with the SEM pictures and Yukiko Taniuchi for help in sequencing the nad1 gene. Two anonymous referees provided very useful comments. Ian Probert provided invaluable help and advice for the taxonomic treatment. Financial support for this work was provided by Grants-in-Aid for Scientific Research 22657027, 23370046, 26291085 and 15K14784 from the Japan Society for the Promotion of Science (JSPS), the Canon Foundation and Core Research for Evolutional Science and Technology from Japan Science and Technology as well as by the European Union programs MicroB3 (UE-contract-287589) and MaCuMBA (FP7-KBBE-2012-6-311975), and the French 'Investissements d'Avenir' programs OCEANOMICS (ANR-11-BTBR-0008) and EMBRC-France.	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OCT	2016	10	10					2419	2434		10.1038/ismej.2016.38	http://dx.doi.org/10.1038/ismej.2016.38			16	Ecology; Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Microbiology	EB0LN	27003244	Green Published, hybrid			2025-03-11	WOS:000387035400007
J	Fraga, S; Rodríguez, F; Riobó, P; Bravo, I				Fraga, Santiago; Rodriguez, Francisco; Riobo, Pilar; Bravo, Isabel			<i>Gambierdiscus balechii</i> sp nov (Dinophyceae), a new benthic toxic dinoflagellate from the Celebes Sea (SW Pacific Ocean)	HARMFUL ALGAE			English	Article						Benthic dinoflagellates; Celebes Sea; Ciguatera; Cysts; Gambierdiscus balechii; rRNA	GENUS GAMBIERDISCUS; CIGUATERA; GONYAULACALES; MORPHOLOGY; TAXONOMY; AREAS	A new benthic toxic dinoflagellate is described from the Celebes Sea. Gambierdiscus balechii sp. nov. was isolated from seaweeds growing in tidal ponds. Its morphology was studied by means of LM and SEM; G. balechii has a very ornamented theca, a hatchet shaped second apical plate, a narrow second antapical plate and an asymmetrical third precigular plate, a unique combination of characters among Gambierdiscus species. It has a very wide size range with widths from 36 to mu m. Phylogenetic analyses of two G. balechii strains, based on LSU rRNA (D8-D10) and partial SSUrRNA sequences confirmed that these clustererd in its' own group, separated from the rest of Gambierdiscus species and with G. pacificus, G. belizeanus and G. scabrosus as its closest relatives. Thecate cysts are described from culture as non motile vegetative-like cells which germinated after being isolated and transferred to fresh medium. Mouse tests showed that this species is toxic and hence it is a potential cause of ciguatera in the Celebes Sea. (C) 2016 Elsevier B.V. All rights reserved.	[Fraga, Santiago; Rodriguez, Francisco; Bravo, Isabel] Inst Espanol Oceanog, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain; [Riobo, Pilar] CSIC, IIM, Eduardo Cabello 6, Vigo 36208, Spain	Spanish Institute of Oceanography; Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM)	Fraga, S; Rodríguez, F (通讯作者)，Inst Espanol Oceanog, Ctr Oceanog Vigo, Subida Radio Faro 50, Vigo 36390, Spain.	santi.fraga@vi.ieo.es; francisco.rodriguez@vi.ieo.es; pilarriobo@iim.csic.es; isabel.bravo@vi.ieo.es	Fraga, Santiago/AAA-3760-2020; Bravo, Isabel/D-3147-2012; Riobo, Pilar/K-1945-2017; Rodriguez, Francisco/A-5934-2019	Riobo, Pilar/0000-0002-1921-6229; Rodriguez, Francisco/0000-0002-6918-4771; Bravo, Isabel/0000-0003-3764-745X	CICAN; CCVIEO	CICAN; CCVIEO	The comments and suggestions provided by the critical review of anonymous reviewers greatly improved this manuscript. The authors thank Antonella Penna for providing the samples from Manado from which the G. balechi strains were isolated. Ines Pazos from CACTI, Universidade de Vigo, for SEM and confocal microscopy. Angel Sebastian from CACTI, Universidade de Vigo, for DNA sequencing. The authors thank Fabiola Arevalo from INTECMAR (Vilagarcia de Arousa, Spain) for her help with the mouse bioassay. Amelia Fernandez-Villamarin, Isabel Ramilo, Pilar Rial for technical assistance. This work was funded by projects CICAN and CCVIEO. This is a contribution of Unidad Asociada IEO-CSIC Microalgas Nocivas.[SS]	ADACHI R, 1979, B JPN SOC SCI FISH, V45, P67; [Anonymous], 2012, GLOB EC OC HARMF ALG; BESADA EG, 1982, B MAR SCI, V32, P723; Bravo I, 2014, HARMFUL ALGAE, V40, P1, DOI 10.1016/j.hal.2014.09.009; Bravo Isabel, 2014, Microorganisms, V2, P11; Chinain M, 1999, J PHYCOL, V35, P1282, DOI 10.1046/j.1529-8817.1999.3561282.x; De Fouw J.C., 1999, 388802021 IRVM; de Silva E., 1956, Bull. Inst. Fr. 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J	Deng, YY; Hu, ZX; Ma, ZP; Tang, YZ				Deng Yunyan; Hu Zhangxi; Ma Zhaopeng; Tang Ying Zhong			Validation of reference genes for gene expression studies in the dinoflagellate Akashiwo sanguinea by quantitative real-time RT-PCR	ACTA OCEANOLOGICA SINICA			English	Article						Akashiwo sanguinea; dinoflagellate; internal control; qRT-PCR; resting cyst; reference gene	INTERNAL CONTROL GENES; HOUSEKEEPING GENES; ALGAL BLOOMS; NORMALIZATION; SELECTION; PROGRESS; GROWTH; CYSTS; MODEL	The accurate measurement of gene expression via quantitative real-time reverse transcription PCR (qRT-PCR) heavily relies on the choice of valid reference gene(s) for data normalization. Resting cyst is the dormant stage in the life cycle of dinoflagellate, which plays crucial roles in HAB-forming dinoflagellate ecology. However, only limited investigations have been conducted on the reference gene selection in dinoflagellates. Gap remained in our knowledge about appropriate HKGs for normalizing gene expression in different life stages, which laid obstacles for the application of qRT-PCR to the HAB-forming group. In this study, six candidate reference genes, 18S ribosomal RNA (18S), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), alpha-tubulin (TUA), beta-tubulin (TUB), actin (ACT) and cytochrome oxidase subunit 1 (COX1), were evaluated for their expression stability with qRT-PCR and three statistical algorithms (GeNorm, NormFinder, and BestKeeper) for the cosmopolitan, harmful algal bloom-forming dinoflagellate Akashiwo sanguinea. Expression patterns were observed across 18 biological samples, including cells at resting stages (resting cysts), different growth stages, in darkness, exposed to abscisic acid (ABA) and exposed to temperature stress. The results indicated that TUA,.18S,and GAPDH were relatively stable across all tested scenarios. While the best-recommended reference genes differed across experimental groups, the pairs of ACT and TUA, 18S and GAPDH were the most reliable for cells at different growth stages and darkness treatment. The combination of TUA and TUB was the best choice for normalization in resting cysts and in ABA treatment, respectively. The pair of ACT and COXI was suitable for temperature treatments. This study was the first to investigate the stable internal reference genes in dinoflagellates at different stages of life cycle, particularly in resting cysts. Our results provided useful information for selection of reference genes in dinoflagellates regarding quantification of gene expression at different experimental scenarios, which will facilitate more accurate and widespread use of qRT-PCR in gene analysis of dinoflagellates and help to design primers targeting orthologous genes in other algal species.	[Deng Yunyan; Hu Zhangxi; Ma Zhaopeng; Tang Ying Zhong] Chinese Acad Sci, Key Lab Marine Ecol & Environm Sci, Inst Oceanol, Qingdao 266071, Peoples R China; [Tang Ying Zhong] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China; [Ma Zhaopeng] Univ Chinese Acad Sci, Beijing 100049, Peoples R China	Chinese Academy of Sciences; Institute of Oceanology, CAS; Laoshan Laboratory; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS	Tang, YZ (通讯作者)，Chinese Acad Sci, Key Lab Marine Ecol & Environm Sci, Inst Oceanol, Qingdao 266071, Peoples R China.; Tang, YZ (通讯作者)，Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.	yingzhong.tang@qdio.ac.cn	ZHANG, hui jie/HTN-1690-2023		National Natural Science Foundation of China-Shandong Joint Fund for Marine Science Research Centers [U1406403]; State Key Program of National Natural Science of China [61533011]; China Postdoctoral Science Foundation [2014M551969, 2015T80754]	National Natural Science Foundation of China-Shandong Joint Fund for Marine Science Research Centers; State Key Program of National Natural Science of China(National Natural Science Foundation of China (NSFC)); China Postdoctoral Science Foundation(China Postdoctoral Science Foundation)	Foundation item: The National Natural Science Foundation of China-Shandong Joint Fund for Marine Science Research Centers under contract No. U1406403; the State Key Program of National Natural Science of China under contract No. 61533011; China Postdoctoral Science Foundation under contract Nos 2014M551969 and 2015T80754.	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R., 1975, Culture of Marine Invertebrate Animals, P2960; Guo R, 2012, EUR J PROTISTOL, V48, P199, DOI 10.1016/j.ejop.2011.11.001; HALLEGRAEFF GM, 1991, MAR POLLUT BULL, V22, P27, DOI 10.1016/0025-326X(91)90441-T; Hu RB, 2009, BMC MOL BIOL, V10, DOI 10.1186/1471-2199-10-93; Huggett J, 2005, GENES IMMUN, V6, P279, DOI 10.1038/sj.gene.6364190; Jessup DA, 2009, PLOS ONE, V4, DOI 10.1371/journal.pone.0004550; Lee JM, 2010, BMC MOL BIOL, V11, DOI 10.1186/1471-2199-11-8; Matsubara T, 2007, J EXP MAR BIOL ECOL, V342, P226, DOI 10.1016/j.jembe.2006.09.013; Pfaffl MW, 2004, BIOTECHNOL LETT, V26, P509, DOI 10.1023/B:BILE.0000019559.84305.47; Pfaffl MW, 2001, NUCLEIC ACIDS RES, V29, DOI 10.1093/nar/29.9.e45; Radonic A, 2004, BIOCHEM BIOPH RES CO, V313, P856, DOI 10.1016/j.bbrc.2003.11.177; Rosic NN, 2011, MAR BIOTECHNOL, V13, P355, DOI 10.1007/s10126-010-9308-9; Tang YZ, 2015, J PHYCOL, V51, P298, DOI 10.1111/jpy.12274; Tang YZ, 2012, HARMFUL ALGAE, V20, P71, DOI 10.1016/j.hal.2012.08.001; Vandesompele J, 2002, GENOME BIOL, V3, DOI 10.1186/gb-2002-3-7-research0034	30	10	13	5	40	SPRINGER	NEW YORK	233 SPRING ST, NEW YORK, NY 10013 USA	0253-505X	1869-1099		ACTA OCEANOL SIN	Acta Oceanol. Sin.	AUG	2016	35	8					106	113		10.1007/s13131-016-0887-9	http://dx.doi.org/10.1007/s13131-016-0887-9			8	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	DT1NH					2025-03-11	WOS:000381248900015
J	Carreto, JI; Montoya, NG; Carignan, MO; Akselman, R; Acha, EM; Derisio, C				Carreto, Jose I.; Montoya, Nora G.; Carignan, Mario O.; Akselman, Rut; Marcelo Acha, E.; Derisio, Carla			Environmental and biological factors controlling the spring phytoplankton bloom at the Patagonian shelf-break front - Degraded fucoxanthin pigments and the importance of microzooplankton grazing	PROGRESS IN OCEANOGRAPHY			English	Review							WESTERN SOUTH-ATLANTIC; RESTING STAGE CELLS; CHLOROPHYLL-A; ARGENTINE SEA; EMILIANIA-HUXLEYI; PLANKTON COMMUNITIES; OITHONA-SIMILIS; CHLORIN ESTERS; MARINE FRONTS; DIATOM BLOOM	The aim of this study was to investigate the biotic and abiotic factors controlling the spring phytoplankton blooms at the Patagonian shelf-break front (PSBF). Using a CHEMTAX analysis of HPLC pigment data and other methods, the biomass and spatial variability of plankton communities were studied in four sections (39-48 S) across the PSBF during October 2005. Environmental factors and the biomass and composition of plankton communities exhibited a marked spatial heterogeneity. The latitudinal and cross-shelf progression in the timing of the spring bloom initiation and the nutritive properties of the water masses (Subantarctic Shelf Waters and Malvinas Current Waters) seemed to be the key factors. Three plankton regions were distinguished: (a) Outer shelf (OS), (b) Shelf-break front (SBF) and (c) Malvinas Current (MC). At the highly stratified OS region, the post-bloom community showed low-biomasshigh-phytoplankton diversity formed mainly by small cells (haptophytes 30-62%, diatoms 17-49%, chlorophytes 0-34%, and prasinophytes 0-21% of total Chl a). High amounts of degraded fucoxanthin were found associated with the heterotrophic dinoflagellate, Protoperidinium capurroi. Grazing by this microheterotroph on the diatom population seemed to be the most important factor for the spring bloom decay at the OS. A remarkable quasi monospecific bloom (similar to 90%) of a nanodiatom (Thalassiosira bioculata var. raripora) associated with high Chl a (up to 20 mg m(-3)) occurred along (1000 km) the SBF and in the most northern extension of the MC. In the southern region, the bloom was developed under absent or incipient density stratification, increasing solar irradiance, high nitrate and phosphate availability, and low numbers of phytoplankton grazers. The average mixedlayer PAR irradiance (<2.0 mol quanta PAR m(-2) d(-1)) and Si:N ratios (<0.2) were low, suggesting a diatom population limited by light and under progressive silicate limitation. The more stratified northern region of the SBF showed a later stage of the bloom development, but the large population of diatoms under Si limitation was not in senescence and losses from microzooplankton grazing were minor. The observed high proportion of Chl a below a shallow upper mixed layer (up to 85%) could directly reach the bed, favoring the development of epibenthic communities and the formation of seed diatom banks and organic iron-rich sediments. The upwelling along the SBF provides a large source of macronutrients and probably the dissolved iron needed to sustain the intense diatom bloom, but also diatom resting stages that could act as seeds for the next spring bloom. The macronutrient-rich MC region showed low chlorophyll (Chl a < 0.8 mg m(-3)) and a highly diverse phytoplankton community, mainly composed of small cells (diatoms 20-70%, haptophytes 20-40%, chlorophytes 2-25%, prasinophytes 2-18%, and cryptophytes 3-12% of total Chl a). (C) 2016 Elsevier Ltd. All rights reserved.	[Carreto, Jose I.; Montoya, Nora G.; Carignan, Mario O.; Akselman, Rut; Marcelo Acha, E.; Derisio, Carla] Inst Nacl Invest & Desarrollo Pesquero INIDEP, V Ocampo 1,B7602HSA, Mar Del Plata, Buenos Aires, Argentina; [Marcelo Acha, E.; Derisio, Carla] Consejo Nacl Invest Cient & Tecn, RA-1033 Buenos Aires, DF, Argentina; [Marcelo Acha, E.] Univ Nacl Mar del Plata, Fac Ciencias Exactas & Nat, IIMyC, Mar Del Plata, Buenos Aires, Argentina	Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET); National Fisheries Research & Development Institute (INIDEP); Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET); National University of Mar del Plata	Carreto, JI (通讯作者)，Inst Nacl Invest & Desarrollo Pesquero INIDEP, Paseo Victoria Ocampo 1,B7602HSA, Mar Del Plata, Buenos Aires, Argentina.	jcarreto@inidep.edu.ar			INIDEP; Fundacion Antorchas [13900-13, PNUDARG02/018, BB23, BB33]; CONICET [PIP-112-201101-00892]; Inter-American Institute for Global Change Research (IAI) - US National Science Foundation [CRN 3070, GEO-0452325]; Directorate For Geosciences; ICER [1128040] Funding Source: National Science Foundation	INIDEP; Fundacion Antorchas; CONICET(Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET)); Inter-American Institute for Global Change Research (IAI) - US National Science Foundation; Directorate For Geosciences; ICER(National Science Foundation (NSF)NSF - Directorate for Geosciences (GEO))	This work was facilitated by the contribution of many colleagues who provided us instruments, help on board, unpublished data, but mostly useful advices. Among them we wish to thank: A. Bianchi, A. Callone, E. Cozzolino, V. Lutz and A. Piola. We are also grateful to M.D. Makey for providing the computer program CHEMTAX. We are thankful for the constructive criticism of two anonymous reviewers, which greatly improved the manuscript. This work was financed by INIDEP and grants from: "Fundacion Antorchas" (Grant 13900-13), PNUDARG02/018) (BB23 and BB33), CONICET PIP-112-201101-00892, and the Inter-American Institute for Global Change Research (IAI) CRN 3070 sponsored by the US National Science Foundation Grant GEO-0452325. This is INIDEP contribution No 1983.	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Oceanogr.	AUG	2016	146						1	21		10.1016/j.pocean.2016.05.002	http://dx.doi.org/10.1016/j.pocean.2016.05.002			21	Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Oceanography	DU6RH		Bronze, Green Published			2025-03-11	WOS:000382341800001
J	Zimmerman, KCK; Levitis, DA; Pringle, A				Zimmerman, K. C. K.; Levitis, D. A.; Pringle, A.			Beyond animals and plants: dynamic maternal effects in the fungus <i>Neurospora crassa</i>	JOURNAL OF EVOLUTIONARY BIOLOGY			English	Article						anisogamy; crossing distance; development; fungi; maternal effects; microbes; Neurospora crassa; population genetics; quantitative genetics	FLOW-CYTOMETRY DATA; REPRODUCTIVE ISOLATION; SPECIES RECOGNITION; MODEL EUKARYOTE; INHERITANCE; ADAPTATION; EVOLUTION; ORGANIZATION; POPULATIONS; METABOLISM	Maternal effects are widely documented in animals and plants, but not in fungi or other eukaryotes. A principal cause of maternal effects is asymmetrical parental investment in a zygote, creating greater maternal vs. paternal influence on offspring phenotypes. Asymmetrical investments are not limited to animals and plants, but are also prevalent in fungi and groups including apicomplexans, dinoflagellates and red algae. Evidence suggesting maternal effects among fungi is sparse and anecdotal. In an experiment designed to test for maternal effects across sexual reproduction in the model fungus Neurospora crassa, we measured offspring phenotypes from crosses of all possible pairs of 22 individuals. Crosses encompassed reciprocals of 11 mating-type 'A' and 11 mating-type 'a' wild strains. After controlling for the genetic and geographic distances between strains in any individual cross, we found strong evidence for maternal control of perithecia (sporocarp) production, as well as maternal effects on spore numbers and spore germination. However, both parents exert equal influence on the percentage of spores that are pigmented and size of pigmented spores. We propose a model linking the stage-specific presence or absence of maternal effects to cellular developmental processes: effects appear to be mediated primarily through the maternal cytoplasm, and, after spore cell walls form, maternal influence on spore development is limited. Maternal effects in fungi, thus far largely ignored, are likely to shape species' evolution and ecologies. Moreover, the association of anisogamy and maternal effects in a fungus suggests maternal effects may also influence the biology of other anisogamous eukaryotes.	[Zimmerman, K. C. K.] Harvard Univ, Dept Organism & Evolutionary Biol, Cambridge, MA 02138 USA; [Levitis, D. A.] Bates Coll, Dept Biol, Lewiston, ME 04240 USA; [Pringle, A.] Univ Wisconsin, Dept Bot, Madison, WI USA; [Pringle, A.] Univ Wisconsin, Dept Bacteriol, Madison, WI 53706 USA	Harvard University; University of Wisconsin System; University of Wisconsin Madison; University of Wisconsin System; University of Wisconsin Madison	Zimmerman, KCK (通讯作者)，Harvard Univ, Dept Organism & Evolutionary Biol, Biol Labs 2112, 16 Divinity Ave, Cambridge, MA 02138 USA.	kzimmerman@fas.harvard.edu	Pringle, Anne/ISV-5313-2023	Zimmerman, Kolea/0000-0001-6224-3364	FAS Division of Science, Research Computing Group at Harvard University; National Science Foundation [DGE0644491, DGE1144152]; Max Planck Institute for Demographic Research	FAS Division of Science, Research Computing Group at Harvard University; National Science Foundation(National Science Foundation (NSF)); Max Planck Institute for Demographic Research	We thank J. Paltseva for assistance in counting perithecia, P. Rogers for assistance with flow cytometry, R. Corbett-Detig for help with genetic distance calculations, J. Taylor for clarification of SNP data and M. Lalli for critical reading of this manuscript. We are also grateful for the resources provided by the Fungal Genetics Stock Center (Manhattan, Kansas, USA). Some of the computations in this manuscript were run on the Odyssey cluster supported by the FAS Division of Science, Research Computing Group at Harvard University. Our work is supported by the National Science Foundation Graduate Research Fellowship under Grant Nos. (DGE0644491 and DGE1144152) awarded to K.Z. and by other National Science Foundation grants awarded to the Pringle Laboratory. This work was also supported by funds from the Max Planck Institute for Demographic Research to K.Z., D.L. and A.P.	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Evol. Biol.	JUL	2016	29	7					1379	1393		10.1111/jeb.12878	http://dx.doi.org/10.1111/jeb.12878			15	Ecology; Evolutionary Biology; Genetics & Heredity	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Evolutionary Biology; Genetics & Heredity	DU8XS	27062053	Bronze, Green Submitted			2025-03-11	WOS:000382500100010
J	Trigal, C; Ruete, A				Trigal, Cristina; Ruete, Alejandro			Asynchronous changes in abundance over large scales are explained by demographic variation rather than environmental stochasticity in an invasive flagellate	JOURNAL OF ECOLOGY			English	Article						aquatic plant ecology; biogeography; climate; demographic stochasticity; environmental stochasticity; Gonyostomum semen; invasive species; lakes; microalgae	GONYOSTOMUM-SEMEN RAPHIDOPHYCEAE; EARLY-WARNING SIGNALS; BLOOM FORMATION; CYLINDROSPERMOPSIS-RACIBORSKII; DIDYMOSPHENIA-GEMINATA; DINOFLAGELLATE CYSTS; GONYAULAX-TAMARENSIS; BOREAL LAKES; RESPONSES; DYNAMICS	Environmental stochasticity is important in explaining the persistence and establishment of invasive species, but the simultaneous effects of environmental and demographic factors are difficult to separate. Understanding how demography and environmental factors affect invasive species abundance over large temporal and spatial scales is essential to anticipate populations at risk of becoming established and setting appropriate management measures. Using a hierarchical mixed modelling approach, we analysed the spatial and interannual dynamics of the invasive raphidophyte Gonyostomum semen, a noxious flagellate which is spreading in northern Europe, in response to demographic and environmental variation. We used data from 76 lakes distributed across two biogeographical regions in Sweden (Central Plains in the south and Fennoscandian region in the north) and sampled during 14years. We found a strong asynchrony in the density dynamics of G. semen populations between the two regions. G. semen showed positive trends (i.e. increasing frequency of high density peaks) in most southern lakes, forming established populations with recurrent blooms in successive years in some of them. In contrast, G. semen populations were smaller and more stochastic in the north.G. semen previous year's abundance, a proxy for cyst production and recruitment, had a strong control on the dynamics, likely contributing to the stability of high density populations in southern lakes. Conversely, the effects of climate and habitat were weaker and their influence varied across regions. Temperature was the limiting factor in the north whereas local habitat was more important in the south.Synthesis. A full understanding of the mechanisms driving abundance changes across large scales can only be gained if endogenous and environmental factors are analysed together. For phytoplankton species, and specially, noxious microalgae, this implies that proxies for cyst production and recruitment, which are the inoculum for next year population, should be included in e.g. distribution, bloom formation and climate models, as these may modify establishment and population response to environmental variation. Asynchronous changes in abundance across regions also indicate that management plans should be developed for small regions, as inference at a large scale may obscure the mechanisms driving local population changes.	[Trigal, Cristina] Swedish Univ Agr Sci SLU, Swedish Species Informat Ctr, PO 7007, SE-75007 Uppsala, Sweden; [Ruete, Alejandro] Swedish Univ Agr Sci SLU, Dept Ecol, PO 7044, SE-75007 Uppsala, Sweden	Swedish University of Agricultural Sciences; Swedish University of Agricultural Sciences	Trigal, C (通讯作者)，Swedish Univ Agr Sci SLU, Swedish Species Informat Ctr, PO 7007, SE-75007 Uppsala, Sweden.	cristina.trigal@slu.se	Ruete, Alejandro/E-6024-2010					Acosta F, 2015, P NATL ACAD SCI USA, V112, P11594, DOI 10.1073/pnas.1505204112; ANDERSON DM, 1985, LIMNOL OCEANOGR, V30, P1000, DOI 10.4319/lo.1985.30.5.1000; ANDERSON DM, 1983, MAR BIOL, V76, P179, DOI 10.1007/BF00392734; ANDERSON DM, 1978, J PHYCOL, V14, P224, DOI 10.1111/j.1529-8817.1978.tb02452.x; Angeler DG, 2013, HARMFUL ALGAE, V23, P60, DOI 10.1016/j.hal.2013.01.001; [Anonymous], 2011, Data Analysis Using Regression and Multilevel/Hierarchical Models; [Anonymous], RIKSINVENTERING 2000; [Anonymous], METHODS QUANTITATI 1; [Anonymous], 2012, JAGS PROGRAM ANAL BA; BERDALET E, 1993, DEV MAR BIO, V3, P737; Bernard C, 2003, ENVIRON TOXICOL, V18, P176, DOI 10.1002/tox.10112; Drake JM, 2010, NATURE, V467, P456, DOI 10.1038/nature09389; Ellison AM, 2004, ECOL LETT, V7, P509, DOI 10.1111/j.1461-0248.2004.00603.x; Falconer IR, 2006, ENVIRON TOXICOL, V21, P299, DOI 10.1002/tox.20194; Figueroa RI, 2006, J PHYCOL, V42, P859, DOI 10.1111/j.1529-8817.2006.00240.x; Findlay DL, 2005, HYDROBIOLOGIA, V533, P243, DOI 10.1007/s10750-004-2962-z; Garcés E, 2004, J PLANKTON RES, V26, P637, DOI 10.1093/plankt/fbh065; Garcés E, 1999, J PLANKTON RES, V21, P2373, DOI 10.1093/plankt/21.12.2373; Gelman Andrew., 2007, Bayesian Data Analysis, V3rd; Genovesi B, 2009, J PLANKTON RES, V31, P1209, DOI 10.1093/plankt/fbp066; Hagman CHC, 2015, HYDROBIOLOGIA, V744, P1, DOI 10.1007/s10750-014-2050-y; Hansson LA, 2000, ECOLOGY, V81, P842, DOI 10.1890/0012-9658(2000)081[0842:SEOFCD]2.0.CO;2; Hobbs RJ, 2009, TRENDS ECOL EVOL, V24, P599, DOI 10.1016/j.tree.2009.05.012; HONGVE D, 1988, PROC INT ASSOC THE 1, V23, P430; Illies J., 1978, LIMNOFAUNA EUROPAEA; Figueroa RI, 2011, J PHYCOL, V47, P13, DOI 10.1111/j.1529-8817.2010.00937.x; Johansson KSL, 2013, AQUAT SCI, V75, P447, DOI 10.1007/s00027-013-0291-x; Jones R. 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Ecol.	JUL	2016	104	4					947	956		10.1111/1365-2745.12576	http://dx.doi.org/10.1111/1365-2745.12576			10	Plant Sciences; Ecology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Environmental Sciences & Ecology	DQ2ES		Bronze			2025-03-11	WOS:000379015400006
J	Rubino, F; Cibic, T; Belmonte, M; Rogelja, M				Rubino, F.; Cibic, T.; Belmonte, M.; Rogelja, M.			Microbenthic community structure and trophic status of sediments in the Mar Piccolo of Taranto (Mediterranean, Ionian Sea)	ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH			English	Article						Microphytobenthos; Plankton; Resting stages; Benthic primary production; Benthic respiration; Confined marine basin; Ionian sea	MICROPHYTOBENTHIC PRIMARY PRODUCTION; DINOFLAGELLATE CYSTS; SURFACE SEDIMENTS; RESTING STAGES; SUBLITTORAL SEDIMENTS; GULF; BAY; PHYTOPLANKTON; PLANKTON; BIODIVERSITY	This study aimed to assess the benthic ecosystem trophic status in a heavily polluted marine area and the response of the microbenthic community to multiple and diffuse anthropogenic impacts, integrating information coming from the active and resting (plankton's cysts) components of microbenthos. Two sampling campaigns were carried out in the period 2013-2014 and four sampling sites at different levels of industrial contamination were chosen within the first and second inlet of the Mar Piccolo of Taranto. The chemical contamination affected to a higher extent the active microbenthos than the resting one. In the central part of the first inlet, characterised by more marine features, thrives a very rich and biodiverse microbenthic community. In contrast, at the polluted site near the military navy arsenal, extremely low densities (9576 +/- 1732 cells cm(-3)) were observed for active microbenthos, but not for the resting community. Here, the high level of contamination selected for tychopelagic diatom species, i.e., thriving just above the surface sediments, while the other life forms died or moved away. Following the adoption of a 10 mu m mesh, for the first time, resting spores produced by small diatoms of the genus Chaetoceros were found. Our results further indicate that although the Mar Piccolo is very shallow, the benthic system is scarcely productive, likely as a consequence of the accumulated contaminants in the surface sediments that probably interfere with the proper functioning of the benthic ecosystem.	[Rubino, F.; Belmonte, M.] UOS Talassog A Cerruti, CNR Inst Coastal Marine Environm, Taranto, Italy; [Cibic, T.; Rogelja, M.] OGS Ist Nazl Oceanog & Geofis Sperimentale, Trieste, Italy	Istituto Nazionale di Oceanografia e di Geofisica Sperimentale	Rubino, F (通讯作者)，UOS Talassog A Cerruti, CNR Inst Coastal Marine Environm, Taranto, Italy.	rubino@iamc.cnr.it	Belmonte, Marisol/AAG-9759-2019; Rubino, Fernando/GOP-0332-2022	Rubino, Fernando/0000-0003-2552-2510; Cibic, Tamara/0000-0003-1519-4891	Ministry for Education, University and Research within the National Research Programme	Ministry for Education, University and Research within the National Research Programme(Ministry of Education, Universities and Research (MIUR))	The activities described in this publication were founded by the Project Bandiera RITMARE - La Ricerca Italiana per il Mare coordinated by the National Research Council and funded by the Ministry for Education, University and Research within the National Research Programme 2011-2013.	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J	Rembauville, M; Blain, S; Caparros, J; Salter, I				Rembauville, M.; Blain, S.; Caparros, J.; Salter, I.			Particulate matter stoichiometry driven by microplankton community structure in summer in the Indian sector of the Southern Ocean	LIMNOLOGY AND OCEANOGRAPHY			English	Article							NATURAL IRON-FERTILIZATION; SUBSURFACE CHLOROPHYLL MAXIMUM; ORGANIC-CARBON FLUX; PHYTOPLANKTON BLOOM; ELEMENTAL STOICHIOMETRY; MARINE-PHYTOPLANKTON; CROZET BASIN; FRONTAL ZONE; INTERANNUAL VARIABILITY; LIGHT INTERACTIONS	Microplankton community structure and particulate matter stoichiometry were investigated in a late summer survey across the Subantarctic and Polar Front in the Indian sector of the Southern Ocean. Microplankton community structure exerted a first order control on PON:POP stoichiometry with diatom-dominated samples exhibiting much lower ratios (4-6) than dinoflagellate and ciliate-dominated samples (10-21). A significant fraction of the total chlorophyll a (30-70%) was located beneath the euphotic zone and mixed layer and sub-surface chlorophyll features were associated to transition layers. Although micro-plankton community structure and biomass was similar between mixed and transition layers, the latter was characterized by elevated Chl:POC ratios indicating photoacclimation of mixed layer communities. Empty diatom frustules, in particular of Fragilariopsis kerguelensis and Pseudo-nitzschia, were found to accumulate in the Antarctic Zone transition layer and were associated to elevated BSi:POC ratios. Furthermore, high Si(OH) 4 diffusive fluxes (>1 mmol m(2) d(-1)) into the transition layer appeared likely to sustain silicification. We suggest transition layers as key areas of C and Si decoupling through (1) physiological constraints on carbon and silicon fixation (2) as active foraging sites for grazers that preferentially remineralize carbon. On the Kerguelen Plateau, the dominant contribution of Chaetoceros Hyalochaete resting spores to microplankton biomass resulted in a three-fold enhancement of POC concentration at 250 m, compared to other stations. These findings further highlight the importance of diatom resting spores as a significant vector of carbon export through the intense remineralization horizons characteristing Southern Ocean ecosystems.	[Rembauville, M.; Blain, S.; Caparros, J.; Salter, I.] UPMC Univ Paris 06, Sorbonne Univ, CNRS, Lab Oceanog Microbienne LOMIC,Observ Oceanol, Banyuls Sur Mer, France; [Salter, I.] Alfred Wegener Inst, Helmholtz Ctr Polar & Marine Res, Bremerhaven, Germany	Sorbonne Universite; Centre National de la Recherche Scientifique (CNRS); Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research	Rembauville, M (通讯作者)，UPMC Univ Paris 06, Sorbonne Univ, CNRS, Lab Oceanog Microbienne LOMIC,Observ Oceanol, Banyuls Sur Mer, France.	rembauville@obs-banyuls.fr	Rembauville, Mathieu/LSK-7045-2024; Salter, Ian/AAI-1015-2021; blain, stephane/F-6917-2010	blain, stephane/0000-0002-5234-2446; Rembauville, Mathieu/0000-0003-0850-8565; Salter, Ian/0000-0002-4513-0314	French research program of INSU-CNRS LEFE-CYBER (EXPLAIN); French ANR (KEOPS2) [ANR-10-BLAN-0614]; French institute INSU; French institute IPEV; French program SOERE/Great-gases; European program FP7/Carbochange	French research program of INSU-CNRS LEFE-CYBER (EXPLAIN); French ANR (KEOPS2)(Agence Nationale de la Recherche (ANR)); French institute INSU; French institute IPEV; French program SOERE/Great-gases; European program FP7/Carbochange	We thank the captain Bernard Lassiette and crew of the R/V Marion Dufresne for their support aboard as well as the chief scientist Yves Cherel. We thank Claire Lo Monaco and Celine Ridame for the access to the CTD and chlorophyll a data and Isabelle Durand for the help in the Thorpe displacement calculation. We thank the three anonymous reviewers for their constructive comments, which helped us to improve the manuscript. This work was supported by grants from the French research program of INSU-CNRS LEFE-CYBER (EXPLAIN, Ian Salter) and the French ANR (KEOPS2, ANR-10-BLAN-0614, Stephane Blain). The OISO program is supported by the French institutes INSU and IPEV, the French program SOERE/Great-gases, and the European program FP7/Carbochange.	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J	Quijano-Scheggia, S; Barajas-Gonzalez, M; Lim, HC; Leaw, CP; Olivos-Ortiz, A; Gaviño-Rodriguez, J; Pérez, JB; Bates, SS				Quijano-Scheggia, Sonia; Barajas-Gonzalez, Maribel; Lim, Hong Chang; Leaw, Chui Pin; Olivos-Ortiz, Aramis; Gavino-Rodriguez, Juan; Blanco Perez, Juan; Bates, Stephen S.			The inhibitory effect of a non-yessotoxin-producing dinoflagellate, <i>Lingulodinium polyedrum</i> (Stein) Dodge, towards <i>Vibrio vulnificus</i> and <i>Staphylococcus aureus</i>	REVISTA DE BIOLOGIA TROPICAL			English	Article							RNA SECONDARY STRUCTURE; GULF-OF-CALIFORNIA; SEQUENCE ALIGNMENT; BAHIA CONCEPCION; CYST PRODUCTION; DATABASE; ANTIBACTERIAL; RETICULATUM; VARIABILITY; RESISTANCE	The increased bacterial resistance to antibiotics has caused global concern, prompting the search for new compounds. Because of their abundance and diversity, marine phytoplankton are an important potential source of such compounds. Research on dinoflagellates has led to the discovery of inhibitors of bacterial growth. The marine dinoflagellate Lingulodinium polyedrum blooms in different regions of the world, including Mexico, and is also known to regulate the growth of other species in coastal waters. Here, we investigated the taxonomy of this dinoflagellate and characterized the ability of its extracts to inhibit the growth of two bacteria of medical importance (Vibrio vulnificus and Staphylococcus aureus). Taxonomic characterization was performed by PCR and gene amplification of ITS, and confirmed that the species isolated off the Pacific coast of Mexico was L. polyedrum. To prove the inhibitory effect of L. polyedrum extracts, cultures were harvested by centrifugation. Pellets from three cellular abundances were extracted with water, methanol, hexane and chloroform. The experiments on V. vulnificus showed a high growth inhibition for the four extracts, ranging from 77 to 98 %. Surprisingly, the growth inhibition was lower when the extracts originated from a higher L. polyedrum cell abundance, ranging from 0 to 34 %. For S. aureus, the growth inhibition was also high, but not statistically different for all extracts and cell abundances, ranging from 62 to 99 %. This study obtained promising results for future pharmacological applications. Our Mexican strain of L. polyedrum did not produce any detectable yessotoxins.	[Quijano-Scheggia, Sonia; Barajas-Gonzalez, Maribel; Olivos-Ortiz, Aramis; Gavino-Rodriguez, Juan] Univ Colima, Ctr Univ Invest Oceanol, Carretera Manzanillo Barra Navidad Km 19-5, Manzanillo 28860, Colima, Mexico; [Lim, Hong Chang; Leaw, Chui Pin] Univ Malaya, Inst Ocean & Earth Sci, Bachok Marine Res Stn, Bachok 16310, Kelantan, Malaysia; [Blanco Perez, Juan] Ctr Invest Marinas, Pedras Coron S-N,Apdo 13, Vilanova De Arousa 36620, Spain; [Bates, Stephen S.] Fisheries & Oceans Canada, Gulf Fisheries Ctr, POB 5030, Moncton, NB E1C 9B6, Canada	Universidad de Colima; Universiti Malaya; Fisheries & Oceans Canada	Quijano-Scheggia, S (通讯作者)，Univ Colima, Ctr Univ Invest Oceanol, Carretera Manzanillo Barra Navidad Km 19-5, Manzanillo 28860, Colima, Mexico.	quijanosonia@gmail.com; maribel_barajas@ucol.mx; hclim24@gmail.com; chuipinleaw@gmail.com; aolivos@ucol.mx; gavinho@ucol.mx; juan.carlos.blanco.perez@xunta.es; stephen.bates@dfo-mpo.gc.ca	Leaw, Chui Pin/F-5220-2012; Lim, Hong/J-8761-2012	Olivos-Ortiz, Aramis/0000-0002-9886-9817; Quijano, Sonia/0000-0003-1499-8337; Lim, Hong Chang/0000-0003-0013-7819	University of Colima; Terminal KMS de GNL, S. de R.L. de C.V.	University of Colima; Terminal KMS de GNL, S. de R.L. de C.V.	We thank the University of Colima and Terminal KMS de GNL, S. de R.L. de C.V. for the funding provided for this research, Maria Rivera-Vilarelle for her onsite effort and invaluable lab work, and the Centro de Investigacion en Alimentacion y Desarrollo (Mazatlan, Sinaloa, Mexico) for providing the Vibrio vulnificus strain.	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Biol. Trop.	JUN	2016	64	2					805	816						12	Biology	Science Citation Index Expanded (SCI-EXPANDED)	Life Sciences & Biomedicine - Other Topics	DW2IT	29451969	Green Submitted, gold			2025-03-11	WOS:000383466800027
J	Morozova, TV; Orlova, TY; Efimova, KV; Lazaryuk, AY; Burov, BA				Morozova, Tatiana V.; Orlova, Tatiana Yu.; Efimova, Kseniya V.; Lazaryuk, Alexander Yu.; Burov, Boris A.			<i>Scrippsiella trochoidea</i> cysts in recent sediments from Amur Bay, Sea of Japan: distribution and phylogeny	BOTANICA MARINA			English	Article						biomolecular study; dinoflagellate cyst; distribution; longevity; Scrippsiella trochoidea	RECENT MARINE-SEDIMENTS; WALLED DINOFLAGELLATE CYSTS; BOTTOM SEDIMENTS; YOKOHAMA-PORT; TOKYO-BAY; DINOPHYCEAE; GULF; EUTROPHICATION; MORPHOLOGY; PRESERVATION	A study of vertical distribution of dinoflagellate cysts in recent sediments was conducted for the first time in the Far Eastern seas of Russia. Dinoflagellate cysts were studied in sediment cores retrieved from five stations in Amur Bay (Peter the Great Bay, Sea of Japan) in 2010 and 2013. The Scrippsiella trochoidea complex was the dominant type of cyst, the average proportion of which (in the entire sediment cores) reached 39% of the total cyst abundance. The maximum abundance of S. trochoidea complex reached 5513 cysts g(-1) dry sediment. Cysts of the S. trochoidea complex were found to remain viable in the sediments after exposure to sub-zero temperatures. The identification of S. trochoidea in the Far Eastern seas of Russia was first confirmed by using biomolecular genetic analyses. The study of vertical distribution showed that cysts of this species dominate the upper sediment layers (0-10 cm). A tendency for abundance to increase from the shore toward the middle part of the bay was observed in the spatial distribution of cysts.	[Morozova, Tatiana V.; Orlova, Tatiana Yu.; Efimova, Kseniya V.] Russian Acad Sci, Far Eastern Branch, AV Zhirmunsky Inst Marine Biol, 17 Palchevskogo Str, Vladivostok 690041, Russia; [Efimova, Kseniya V.] Far Eastern Fed Univ, 8 Sukhanova Str, Vladivostok 690950, Russia; [Lazaryuk, Alexander Yu.; Burov, Boris A.] Russian Acad Sci, Far Eastern Branch, VI Ilichev Pacific Oceanol Inst, 43 Baltiiskaya Str, Vladivostok 690041, Russia	Russian Academy of Sciences; National Scientific Center of Marine Biology, Far East Branch of the Russian Academy of Sciences; Far Eastern Federal University; Ilichev Pacific Oceanological Institute; Russian Academy of Sciences	Morozova, TV (通讯作者)，Russian Acad Sci, Far Eastern Branch, AV Zhirmunsky Inst Marine Biol, 17 Palchevskogo Str, Vladivostok 690041, Russia.	tatiana_morozova@mail.ru	Morozova, Tatiana/G-4468-2018; Efimova, Kseniya/Q-3201-2016; Lazaryuk, Alexander/AAH-2203-2019; Orlova, Tatiana/AAU-8448-2020	Orlova, Tatiana/0000-0002-5246-6967; Efimova, Kseniya/0000-0002-6617-288X	Russian Foundation for Basic Research [15-04-05331]; Far Eastern Branch of Russian Academy of Sciences [12-III-A-06-093, 15-I-6-056, 15-I-6-059, 15-I-7-012, 15-I-6-014 o]; Russian Science Foundation [14-50-00034]	Russian Foundation for Basic Research(Russian Foundation for Basic Research (RFBR)Spanish Government); Far Eastern Branch of Russian Academy of Sciences(Russian Academy of Sciences); Russian Science Foundation(Russian Science Foundation (RSF))	The authors gratefully acknowledge the Russian Foundation for Basic Research (grant 15-04-05331), the Far Eastern Branch of Russian Academy of Sciences [grants 12-III-A-06-093, 15-I-6-056, 15-I-6-059, 15-I-7-012 (collection of biological material and culturing), 15-I-6-014 o (identification of microalgae)]. The genetic analysis in this study was supported by the Russian Science Foundation (grant 14-50-00034). We are grateful to anonymous reviewers for helpful comments on the manuscript. Special thanks are due to Dr. Vera Pospelova (University of Victoria, Canada) and Dr. Mark L. Wells (University of Maine, USA) for their valuable comments.	ADACHI M, 1994, J PHYCOL, V30, P857, DOI 10.1111/j.0022-3646.1994.00857.x; Adachi R., 1972, Journal Fac Fish prefect Univ Mie, V9, P9; Aksentov K. I., 2009, VESTN DVO RAN, V4, P115; Anikeev V. 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Marina	JUN	2016	59	2-3					159	172		10.1515/bot-2015-0057	http://dx.doi.org/10.1515/bot-2015-0057			14	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	DO1OF					2025-03-11	WOS:000377547200007
J	Ribeiro, S; Amorim, A; Abrantes, F; Ellegaard, M				Ribeiro, Sofia; Amorim, Ana; Abrantes, Fatima; Ellegaard, Marianne			Environmental change in the Western Iberia Upwelling Ecosystem since the preindustrial period revealed by dinoflagellate cyst records	HOLOCENE			English	Article						dinoflagellate cysts; Douro river; eutrophication; North Atlantic Oscillation; upwelling; Western Iberian Upwelling Ecosystem	NORTH-ATLANTIC OSCILLATION; SANTA-BARBARA BASIN; HYDROGRAPHIC CONDITIONS; GYMNODINIUM-CATENATUM; SEDIMENTARY RECORD; SURFACE SEDIMENTS; NORWEGIAN FJORD; GULLMAR FJORD; BALTIC SEA; EUTROPHICATION	We present the first multi-site study of dinoflagellate cyst records spanning ca. AD 1860-2000 from the west Iberian coast. Our aim was to reconstruct environmental changes in the Western Iberia Upwelling Ecosystem, one of the most biologically productive areas in the world, and an active fishery region. A major shift in cyst assemblages was recorded off the northwestern shelf sector between 1920 and 1950 towards autotrophic dominance, and consisted of a multi-fold increase in total cyst concentrations and cysts of Lingulodinium polyedrum, accompanied by an increase in Protoceratium reticulatum cysts. The observed changes pre-date the industrialization of agriculture in Portugal, and are concomitant with a shift in the North Atlantic Oscillation (NAO) towards negative indices (higher river input) and increasing sea-surface temperatures. The southernmost record, with reduced river- and human influence, showed only minor changes during the 20th century. Here, an increase in Protoperidinioid cysts after the 1980s is related to upwelling intensification. Our study indicates that the main changes recorded in the Western Iberian Upwelling system during the 20th century were driven by regional climate variability (warming, increased water stability and nutrient availability), possibly enhanced by anthropogenic nutrient input from the second half of the century. Our results highlight the complexity of the environmental drivers that may act upon dinoflagellate communities within the same region. The 20th-century environmental change in the Western Iberian Ecosystem has resulted in a shift towards marked autotrophic dominance of dinoflagellate cyst communities, and the northward expansion of species associated with Harmful Algal Blooms.	[Ribeiro, Sofia] Geol Survey Denmark & Greenland GEUS, Dept Glaciol & Climate, DK-1350 Copenhagen KBH K, Denmark; [Amorim, Ana] Univ Lisbon, Fac Ciencias, Marine & Environm Sci Ctr, P-1699 Lisbon, Portugal; [Amorim, Ana] Univ Lisbon, Fac Ciencias, Dept Biol Vegetal, P-1699 Lisbon, Portugal; [Abrantes, Fatima] IPMA, Unidade Geol Marinha, Lisbon, Portugal; [Ellegaard, Marianne] Univ Copenhagen, Dept Plant & Environm Sci PLEN, DK-1168 Copenhagen, Denmark	Geological Survey Of Denmark & Greenland; Universidade de Lisboa; Universidade de Lisboa; Laboratorio Nacional de Energia e Geologia IP (LNEG); Instituto Portugues do Mar e da Atmosfera; University of Copenhagen	Ribeiro, S (通讯作者)，Geol Survey Denmark & Greenland GEUS, Dept Glaciol & Climate, DK-1350 Copenhagen KBH K, Denmark.	sri@geus.dk	Ribeiro, Sofia/AAZ-2782-2021; Abrantes, Fatima/N-7253-2019; Ellegaard, Marianne/H-6748-2014; Ribeiro, Sofia/G-9213-2018; Abrantes, Fatima/B-5985-2013; Amorim, Ana/AAA-2615-2020	Ellegaard, Marianne/0000-0002-6032-3376; Ribeiro, Sofia/0000-0003-0672-9161; Abrantes, Fatima/0000-0002-9110-0212; Amorim, Ana/0000-0002-9612-4280	EU project HOLSMEER [EVK2-CT-2000-00060]; ESF EUROCORES EUROMARGINS project SEDPORT [PDCTM/40017/2003]; Portuguese Foundation for Science and Technology [UID/MAR/04292/2013]; project INSPECT [PTDC/MAR/73579/2006, SFRH/BD/30847/2006, PEst-OE/MAR/UI0199/2011]	EU project HOLSMEER; ESF EUROCORES EUROMARGINS project SEDPORT; Portuguese Foundation for Science and Technology(Fundacao para a Ciencia e a Tecnologia (FCT)); project INSPECT	Financial support was provided by the EU project HOLSMEER (EVK2-CT-2000-00060), the ESF EUROCORES EUROMARGINS project SEDPORT (PDCTM/40017/2003) and by the Portuguese Foundation for Science and Technology through UID/MAR/04292/2013, project INSPECT (PTDC/MAR/73579/2006), grant no. 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J	Abadie, E; Muguet, A; Berteaux, T; Chomérat, N; Hess, P; D'OrbCastel, ER; Masseret, E; Laabir, M				Abadie, Eric; Muguet, Alexia; Berteaux, Tom; Chomerat, Nicolas; Hess, Philipp; D'OrbCastel, Emmanuelle Roque; Masseret, Estelle; Laabir, Mohamed			Toxin and Growth Responses of the Neurotoxic Dinoflagellate <i>Vulcanodinium rugosum</i> to Varying Temperature and Salinity	TOXINS			English	Article						Vulcanodinium rugosum; Mediterranean Ingril Lagoon; toxin production; growth conditions; temperature; salinity	HARMFUL ALGAL BLOOMS; GYMNODINIUM-CATENATUM DINOPHYCEAE; ALEXANDRIUM-TAMARENSE; MARINE DINOFLAGELLATE; ENVIRONMENTAL-FACTORS; PARALYTIC SHELLFISH; CLIMATE-CHANGE; HIROSHIMA BAY; RESTING CYSTS; PINNATOXINS E	Vulcanodinium rugosum, a recently described species, produces pinnatoxins. The IFR-VRU-01 strain, isolated from a French Mediterranean lagoon in 2010 and identified as the causative dinoflagellate contaminating mussels in the Ingril Lagoon (French Mediterranean) with pinnatoxin-G, was grown in an enriched natural seawater medium. We tested the effect of temperature and salinity on growth, pinnatoxin-G production and chlorophyll a levels of this dinoflagellate. These factors were tested in combinations of five temperatures (15, 20, 25, 30 and 35 degrees C) and five salinities (20, 25, 30, 35 and 40) at an irradiance of 100 mu mol photon m(-2) s(-1). V. rugosum can grow at temperatures and salinities ranging from 20 degrees C to 30 degrees C and 20 to 40, respectively. The optimal combination for growth (0.39 +/- 0.11 d(-1)) was a temperature of 25 degrees C and a salinity of 40. Results suggest that V. rugosum is euryhaline and thermophile which could explain why this dinoflagellate develops in situ only from June to September. V. rugosum growth rate and pinnatoxin-G production were highest at temperatures ranging between 25 and 30 degrees C. This suggests that the dinoflagellate may give rise to extensive blooms in the coming decades caused by the climate change-related increases in temperature expected in the Mediterranean coasts.	[Abadie, Eric; Muguet, Alexia; Berteaux, Tom; D'OrbCastel, Emmanuelle Roque] IFREMER, Ctr Marine Biodivers Exploitat & Conservat MARBEC, Lab Environm Ressources Languedoc Roussillon, CS30171, F-34200 Sete 03, France; [Chomerat, Nicolas] IFREMER, Lab Environm Ressources Bretagne Occidentale, Pl Croix, F-29900 Concarneau, France; [Hess, Philipp] IFREMER, Lab Phycotoxines DYNECO PHYC, Rue Ile Yeu,BP 21105, F-44311 Nantes 3, France; [Masseret, Estelle; Laabir, Mohamed] Univ Montpellier, Inst Dev Res, Ctr Marine Biodivers Exploitat & Conservat MARBEC, Ifremer,CNRS, Pl E Bataillon,CC93, F-34095 Montpellier 5, France	Ifremer; Ifremer; Ifremer; Universite de Montpellier; Institut de Recherche pour le Developpement (IRD); Ifremer; Centre National de la Recherche Scientifique (CNRS)	Abadie, E (通讯作者)，IFREMER, Ctr Marine Biodivers Exploitat & Conservat MARBEC, Lab Environm Ressources Languedoc Roussillon, CS30171, F-34200 Sete 03, France.	eric.abadie@ifremer.fr; alexia.muguet@hotmail.fr; tom.berteaux@ifremer.fr; nicolas.chomerat@ifremer.fr; philipp.hess@ifremer.fr; emmanuelle.roque@ifremer.fr; estelle.masseret@univ-montp2.fr; mohamed.laabir@univ-montp2.fr	; Hess, Philipp/G-1761-2010	Chomerat, Nicolas/0000-0001-9691-6344; roque d'orbcastel, emmanuelle/0000-0002-0954-0033; Hess, Philipp/0000-0002-9047-1345; ABADIE, Eric/0000-0001-9431-2010; Masseret, Estelle/0000-0001-6856-8637	EC2CO Ecosphere Continentale et Cotiere DRIL (VULCANO project); TOTAL Foundation (LAGUNOTOX project); Agence de l'Eau Rhone Mediterranee Corse (AERMC-Rhone Mediterranean Corsica Water Agency); IRD (Institut National pour la Recherche et le Developpement-National Institute for Research and Development)	EC2CO Ecosphere Continentale et Cotiere DRIL (VULCANO project); TOTAL Foundation (LAGUNOTOX project); Agence de l'Eau Rhone Mediterranee Corse (AERMC-Rhone Mediterranean Corsica Water Agency); IRD (Institut National pour la Recherche et le Developpement-National Institute for Research and Development)	Thanks to EC2CO Ecosphere Continentale et Cotiere DRIL (VULCANO project) and TOTAL Foundation (LAGUNOTOX project) for funding this work. We would also to thank the Agence de l'Eau Rhone Mediterranee Corse (AERMC-Rhone Mediterranean Corsica Water Agency) for their financial help. Thanks to the IRD (Institut National pour la Recherche et le Developpement-National Institute for Research and Development) for funding Mohamed Laabir's stay in Tunisia.	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YAMAGUCHI M, 1991, NIPPON SUISAN GAKK, V57, P1277; Yamamoto T, 2002, FISHERIES SCI, V68, P356, DOI 10.1046/j.1444-2906.2002.00433.x; Yoshimatsu T, 2014, HARMFUL ALGAE, V35, P29, DOI 10.1016/j.hal.2014.03.007; Zeng N, 2012, NEW ZEAL J MAR FRESH, V46, P511, DOI 10.1080/00288330.2012.719911	76	18	19	1	40	MDPI	BASEL	ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND		2072-6651		TOXINS	Toxins	MAY	2016	8	5							136	10.3390/toxins8050136	http://dx.doi.org/10.3390/toxins8050136			18	Food Science & Technology; Toxicology	Science Citation Index Expanded (SCI-EXPANDED)	Food Science & Technology; Toxicology	DN9VH	27164144	Green Published, gold			2025-03-11	WOS:000377428300017
J	Mardones, JI; Bolch, C; Guzmán, L; Paredes, J; Varela, D; Hallegraeff, GM				Mardones, Jorge I.; Bolch, Chris; Guzman, Leonardo; Paredes, Javier; Varela, Daniel; Hallegraeff, Gustaaf M.			Role of resting cysts in Chilean <i>Alexandrium catenella</i> dinoflagellate blooms revisited	HARMFUL ALGAE			English	Article						Alexandrium catenella; Mating compatibility/encystment; Mandatory dormancy; Excystment; AFLPs; Chilean cysts field data	SPECIES COMPLEX DINOPHYCEAE; GENETIC DIVERSITY; TAMARENSE; EXCYSTMENT; DNA; GERMINATION; POPULATION; FRAGMENT; DORMANCY; FJORDS	The detection of sparse Alexandrium catenella-resting cysts in sediments of southern Chilean fjords has cast doubts on their importance in the recurrence of massive toxic dinoflagellate blooms in the region. The role of resting cysts and the existence of different regional Chilean populations was studied by culturing and genetic approaches to define: (1) cyst production; (2) dormancy period; (3) excystment success; (4) offspring viability and (5) strain mating compatibility. This study newly revealed a short cyst dormancy (minimum 69 days), the role of key abiotic factors (in decreasing order salinity, irradiance, temperature and nutrients) controlling cyst germination (max. 60%) and germling growth rates (up to 0.36-0.52 div. day(-1)). Amplified fragment length polymorphism (AFLP) characterization showed significant differences in genetic distances (GD) among A. catenella populations that were primarily determined by the geographical origin of isolates and most likely driven by oceanographic dispersal barriers. A complex heterothallic mating system pointed to variable reproductive compatibility (RCs) among Chilean strains that was high among northern (Los Lagos/North Aysen) and southern populations (Magallanes), but limited among the genetically differentiated central (South Aysen) populations. Field cyst surveys after a massive 2009 bloom event revealed the existence of exceptional high cyst densities in particular areas of the fjords (max. 14.627 cysts cm(-3)), which contrast with low cyst concentrations (<221.3 cysts cm(-3)) detected by previous oceanographic campaigns. In conclusion, the present study suggests that A. catenella resting cysts play a more important role in the success of this species in Chilean fjords than previously thought. Results from in vitro experiments suggest that pelagic-benthic processes can maintain year-round low vegetative cell concentrations in the water column, but also can explain the detection of high cysts aggregations after the 2009-bloom event. Regional drivers that lead to massive outbreaks, however, are still unknown but, potential scenarios are discussed. (C) 2016 Elsevier B.V. All rights reserved.	[Mardones, Jorge I.; Bolch, Chris; Hallegraeff, Gustaaf M.] Univ Tasmania, Inst Marine & Antarctic Studies IMAS, Private Bag 129, Hobart, Tas 7001, Australia; [Guzman, Leonardo] IFOP, Balmaceda 252, Puerto Montt 5480000, Chile; [Paredes, Javier; Varela, Daniel] Univ Lagos, Ctr I Mar, Casilla 557, Puerto Montt, Chile; [Paredes, Javier] Univ Catolica Norte, Fac Ciencias Mar, Dept Biol Marina, Programa Doctorado Biol & Ecol Aplicada, Antofagasta, Chile	University of Tasmania; Universidad de Los Lagos; Universidad Catolica del Norte	Mardones, JI (通讯作者)，Univ Tasmania, Inst Marine & Antarctic Studies IMAS, Private Bag 129, Hobart, Tas 7001, Australia.	jorge.mardones@utas.edu.au	Bolch, Christopher/J-7619-2014; Hallegraeff, Gustaaf/C-8351-2013; Varela, Daniel/D-7908-2013	Hallegraeff, Gustaaf/0000-0001-8464-7343; Varela, Daniel/0000-0003-4603-4970; Mardones, Jorge/0000-0003-3160-0415	BECAS-CHILE Program of the National Commission for Scientific and Technological Research (CONICYT); Chilean Ph.D student fellowship from CONICYT; FONDECYT [1130954]; Fisheries and Aquaculture Undersecretary-Instituto de Fomento Pesquero (IFOP)	BECAS-CHILE Program of the National Commission for Scientific and Technological Research (CONICYT); Chilean Ph.D student fellowship from CONICYT; FONDECYT(Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT)CONICYT FONDECYT); Fisheries and Aquaculture Undersecretary-Instituto de Fomento Pesquero (IFOP)	We thank Ludmilla Untari, Helen Bond, Sarah Ugalde and Andrea Zuniga for technical assistance. This research was supported by a Ph.D. student fellowship from BECAS-CHILE Program of the National Commission for Scientific and Technological Research (CONICYT) to J. Mardones and by a Chilean Ph.D student fellowship from CONICYT to J. Paredes. 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J	Luo, ZH; Mertens, KN; Bagheri, S; Aydin, H; Takano, Y; Matsuoka, K; McCarthy, FMG; Gu, HF				Luo, Zhaohe; Mertens, Kenneth Neil; Bagheri, Siamak; Aydin, Hilal; Takano, Yoshihito; Matsuoka, Kazumi; McCarthy, Francine M. G.; Gu, Haifeng			Cyst-theca relationship and phylogenetic positions of <i>Scrippsiella plana</i> sp nov and <i>S-spinifera</i> (Peridiniales, Dinophyceae)	EUROPEAN JOURNAL OF PHYCOLOGY			English	Article						calcareous dinoflagellates; cysts; Duboscquodinium collinii; growth; ITS; Peridinium wisconsinense	CALCAREOUS CYSTS; SEQUENCE DATA; TAXONOMIC CLARIFICATION; ALEXANDRIUM DINOPHYCEAE; TROCHOIDEA DINOPHYCEAE; MARINE DINOFLAGELLATE; MEDITERRANEAN SEA; RIBOSOMAL DNA; MIXED MODELS; CHINA SEA	Species belonging to the dinophyte genus Scrippsiella are frequently reported in marine waters, but information on their distribution in brackish environments is limited. Here we describe a new species, S. plana, through incubation of non-calcified cysts from sediments collected in the South China Sea and Caspian Sea. The vegetative cells consist of a conical epitheca and a rounded hypotheca with the plate formula of Po, X, 4, 3a, 7, 5C+t, 5S, 5, 2. It differs from other Scrippsiella species by its flattened body in dorsoventral view and a small first anterior intercalary (1a) plate (half the size of plate 3a). Scrippsiellaplana strains from the South China Sea and Caspian Sea share identical internal transcribed spacer (ITS) sequences, and show phenotypic plasticity and local adaptation in growth rate at various salinities, consistent with the environments in which they originated. In addition, two strains of S. spinifera were obtained by incubating ellipsoid cysts with calcareous spines from sediments collected along the Turkish and Hawaiian coast. They also share identical ITS sequences and differ from Duboscquodinium collinii (a parasite of tintinnids) only at two base pair positions (in the ITS2 region). Molecular phylogeny based on ITS and large subunit ribosomal DNA (LSU rDNA) sequences revealed that S. plana was nested within the Calciodinellum (CAL) clade and S. spinifera within the S. trochoidea (STR) clade. The phylogenetic position of Peridinium' wisconsinense is reported for the first time, which supports multiple transitions of the Peridiniales to freshwater.	[Luo, Zhaohe; Gu, Haifeng] SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Mertens, Kenneth Neil] Univ Ghent, Res Unit Palaeontol, Krijgslaan 281 S8, B-9000 Ghent, Belgium; [Bagheri, Siamak] AREEO, Iranian Fisheries Sci Inst, Inland Waters Aquaculture Res Ctr, Anzali 66, Iran; [Aydin, Hilal] Celal Bayar Univ, Fac Sci & Arts, Dept Biol, Campus Muradiye, TR-45140 Manisa, Turkey; [Takano, Yoshihito; Matsuoka, Kazumi] Inst East China Sea Res ECSER, 1-14 Bunkyo Machi, Nagasaki 8528521, Japan; [McCarthy, Francine M. G.] Brock Univ, Dept Earth Sci, St Catharines, ON L2S 3A1, Canada	Third Institute of Oceanography, Ministry of Natural Resources; Ghent University; Celal Bayar University; Brock University	Gu, HF (通讯作者)，SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China.	guhaifeng@tio.org.cn	Mertens, Kenneth/AAO-9566-2020; Bagheri, Siamak/S-2035-2016; Luo, Zhaohe/ITT-7163-2023; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Gu, Haifeng/0000-0002-2350-9171; Luo, Zhaohe/0000-0001-8662-2414; Bagheri, Siamak/0000-0002-4645-7634; Mertens, Kenneth/0000-0003-2005-9483	National Natural Science Foundation of China [41376170]; public science and technology research funds projects of ocean [201305027]; Higher Education Council of Turkey	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); public science and technology research funds projects of ocean; Higher Education Council of Turkey(Ministry of National Education - Turkey)	Haifeng Gu was supported by the National Natural Science Foundation of China (41376170) and public science and technology research funds projects of ocean (201305027). Kenneth Neil Mertens is a postdoctoral fellow of FWO Belgium. Hilal Aydin was partly supported by Higher Education Council of Turkey.	Abe T.H., 1981, SETO MARINE BIOL LAB, V6, P1, DOI DOI 10.5134/176462; Adachi M, 1996, J PHYCOL, V32, P424, DOI 10.1111/j.0022-3646.1996.00424.x; Alix B, 2012, NUCLEIC ACIDS RES, V40, pW573, DOI 10.1093/nar/gks485; [Anonymous], 1993, SPEC PUBL NUMBER; Attaran-Fariman G, 2007, PHYCOLOGIA, V46, P572, DOI 10.2216/07-02.1; BALECH E, 1959, BIOL BULL-US, V116, P195, DOI 10.2307/1539204; BALECH E., 1963, NOTAS MUS LA PLATA ZOOL, V20, P111; Balech E., 1980, An. Centro Cienc. del Mar y Limnol. Univ. Nal. Auton. 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J. Phycol.	MAY	2016	51	2					188	202		10.1080/09670262.2015.1120348	http://dx.doi.org/10.1080/09670262.2015.1120348			15	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	DI4VG		Bronze			2025-03-11	WOS:000373496900007
J	Cvetkovic, M; Grego, M; Turk, V				Cvetkovic, Martina; Grego, Mateja; Turk, Valentina			The efficiency of a new hydrodynamic cavitation pilot system on <i>Artemia salina</i> cysts and natural population of copepods and bacteria under controlled mesocosm conditions	MARINE POLLUTION BULLETIN			English	Article						Hydrodynamic cavitation; Ballast water; Copepods; Artemia salina cysts; Heterotrophic marine bacteria	BALLAST WATER MANAGEMENT; DINOFLAGELLATE CYSTS; MEDITERRANEAN SEA; PROTEIN-SYNTHESIS; BY-PRODUCTS; ZOOPLANKTON; SHIPS; OCEAN; PHYTOPLANKTON; ORGANISMS	A study of the efficiency of hydrodynamic cavitation and separation was carried out to evaluate an innovative, environmentally safe and acceptable system for ballast water treatment for reducing the risk of introducing non-native species worldwide. Mesocosm experiments were performed to assess the morphological changes and viability of zooplankton (copepods), Artemia salina cysts, and the growth potential of marine bacteria after the hydrodynamic cavitation treatment with a different number of cycles. Our preliminary results confirmed the significant efficiency of the treatment since more than 98% of the copepods and A. salina cysts were damaged, in comparison with the initial population. The efficiency increased with the number of the hydrodynamic cavitation cycles, or in combination with a separation technique for cysts. There was also a significant decrease in bacterial abundance and growth rate, compared to the initial number and growth potential. (C) 2016 Elsevier Ltd. All rights reserved.	[Cvetkovic, Martina] Univ Ljubljana, Fac Civil & Geodet Engn, Dept Environm Civil Engn, Hajdrihova 28, Ljubljana 1000, Slovenia; [Grego, Mateja; Turk, Valentina] Natl Inst Biol, Marine Biol Stn Piran, SI-6330 Piran, Slovenia	University of Ljubljana; National Institute of Biology - Slovenia	Cvetkovic, M (通讯作者)，Univ Ljubljana, Fac Civil & Geodet Engn, Dept Environm Civil Engn, Hajdrihova 28, Ljubljana 1000, Slovenia.	martina_cvetkovic@yahoo.com	turk, Valentina/AAV-8033-2020					Abatzopoulos TJ, 2003, BELG J ZOOL, V133, P103; [Anonymous], PRINCIPLES MODERN MI; [Anonymous], GUIDELINES APPL BALL; [Anonymous], ABS GUID BALL WAT EX; [Anonymous], EMERGING RISKS BALLA; [Anonymous], 2004, INT CONVENTION CONTR; [Anonymous], 2014, UND BALL WAT MAN GUI; [Anonymous], PHI75005 FAOUNDOBFAR; [Anonymous], CAV 2003 5 INT S CAV; [Anonymous], 55213 IMP MEPC; [Anonymous], THESIS TEXAS A M U T; [Anonymous], DISS ABSTR INT; [Anonymous], MANUAL HARMFUL MARIN; [Anonymous], 2001, Methods in microbiology; Bakalar G, 2014, SPRINGERPLUS, V3, DOI 10.1186/2193-1801-3-468; 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Zhang NH, 2013, CHEM ENG J, V231, P427, DOI 10.1016/j.cej.2013.07.055	83	5	5	2	21	PERGAMON-ELSEVIER SCIENCE LTD	OXFORD	THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND	0025-326X	1879-3363		MAR POLLUT BULL	Mar. Pollut. Bull.	APR 15	2016	105	1					341	350		10.1016/j.marpolbul.2016.01.030	http://dx.doi.org/10.1016/j.marpolbul.2016.01.030			10	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	DL7JC	26902683				2025-03-11	WOS:000375816000053
J	Richlen, ML; Zielinski, O; Holinde, L; Tillmann, U; Cembella, A; Lyu, YH; Anderson, DM				Richlen, Mindy L.; Zielinski, Oliver; Holinde, Lars; Tillmann, Urban; Cembella, Allan; Lyu, Yihua; Anderson, Donald M.			Distribution of <i>Alexandrium fundyense</i> (Dinophyceae) cysts in Greenland and Iceland, with an emphasis on viability and growth in the Arctic	MARINE ECOLOGY PROGRESS SERIES			English	Article						Arctic; Alexandrium; Dinoflagellate; Cysts; Harmful algal bloom	DINOFLAGELLATE RESTING CYSTS; TAMARENSE LEBOUR BALECH; SPATIAL-DISTRIBUTION; DISKO BAY; SURFACE SEDIMENTS; PUGET-SOUND; RED TIDE; WEST; TEMPERATURE; GERMINATION	The bloom-forming dinoflagellate Alexandrium fundyense has been extensively studied due its toxin-producing capabilities and consequent impacts on human health and economies. This study investigated the prevalence of resting cysts of A. fundyense in western Greenland and Iceland, to assess the historical presence and magnitude of bloom populations in the region, and to characterize environmental conditions during summer, when bloom development may occur. Analysis of sediments collected from these locations showed that A. fundyense cysts were present at low to moderate densities in most areas surveyed, with highest densities observed in western Iceland. Additionally, laboratory experiments were conducted on clonal cultures established from isolated cysts or vegetative cells from Greenland, Iceland, and the Chukchi Sea (near Alaska) to examine the effects of photoperiod interval and irradiance levels on growth. Growth rates in response to the experimental treatments varied among isolates, but were generally highest under conditions that included both the shortest photoperiod interval (16 h light:8 h dark) and higher irradiance levels (similar to 146 to 366 mu mol photons m(-2) s(-1)), followed by growth under an extended photoperiod interval and low irradiance level (similar to 37 mu mol photons m-(2) s-(1)). Based on field and laboratory data, we hypothesize that blooms in Greenland are primarily derived from advected A. fundyense populations, as low bottom temperatures and limited light availability would likely preclude in situ bloom development. In contrast, the bays and fjords in Iceland may provide more favorable habitat for germling cell survival and growth and therefore may support indigenous, self-seeding blooms.	[Richlen, Mindy L.; Lyu, Yihua; Anderson, Donald M.] Woods Hole Oceanog Inst, 266 Woods Hole Rd,MS 32, Woods Hole, MA 02543 USA; [Zielinski, Oliver; Holinde, Lars] Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm, D-26111 Oldenburg, Germany; [Tillmann, Urban; Cembella, Allan] Helmholtz Zentrum Polar & Meeresforsch, Alfred Wegener Inst, Handelshafen 12, D-27570 Bremerhaven, Germany; [Lyu, Yihua] Xiamen Univ, Sch Life Sci, State Key Lab Marine Environm Sci, Xiamen 361102, Peoples R China	Woods Hole Oceanographic Institution; Carl von Ossietzky Universitat Oldenburg; Helmholtz Association; Alfred Wegener Institute, Helmholtz Centre for Polar & Marine Research; Xiamen University	Richlen, ML (通讯作者)，Woods Hole Oceanog Inst, 266 Woods Hole Rd,MS 32, Woods Hole, MA 02543 USA.	mrichlen@whoi.edu	Zielinski, Oliver/P-4643-2019	Zielinski, Oliver/0000-0002-6018-5030; Cembella, Allan/0000-0002-1297-2240	Helmholtz Institute initiative Earth and Environment under the PACES Program Topic 2 Coast; Alfred Wegener Institute; Woods Hole Center for Oceans and Human Health through National Science Foundation (NSF) Grant [OCE-1314642]; National Institute of Environmental Health Sciences (NIEHS) Grant [1-P01-ES021923-01]; Captain Klaus Bergman and crew; James M. and Ruth P. Clark Arctic Research Initiative; Directorate For Geosciences; Division Of Ocean Sciences [1314642] Funding Source: National Science Foundation	Helmholtz Institute initiative Earth and Environment under the PACES Program Topic 2 Coast; Alfred Wegener Institute; Woods Hole Center for Oceans and Human Health through National Science Foundation (NSF) Grant(National Science Foundation (NSF)); National Institute of Environmental Health Sciences (NIEHS) Grant; Captain Klaus Bergman and crew; James M. and Ruth P. Clark Arctic Research Initiative; Directorate For Geosciences; Division Of Ocean Sciences(National Science Foundation (NSF)NSF - Directorate for Geosciences (GEO))	Funding for this study was provided by the James M. and Ruth P. Clark Arctic Research Initiative to D.M.A. and M.L.R., and for the ARCHEMHAB expedition via the Helmholtz Institute initiative Earth and Environment under the PACES Program Topic 2 Coast (Workpackage 3) of the Alfred Wegener Institute. The research is part of the SCOR/IOC GEOHAB Core Research Project on HABs in Fjords and Coastal Embayments. Additional support was provided by the Woods Hole Center for Oceans and Human Health through National Science Foundation (NSF) Grant OCE-1314642 and National Institute of Environmental Health Sciences (NIEHS) Grant 1-P01-ES021923-01. We are grateful to Daniela Voss, Daniela Meier, and Rohan Henkel for their assistance during the cruise, and for helping to prepare the figures. We also thank Prof. Haifeng Gu for providing sediments from the Chukchi Sea, and Kerry Norton, Dave Kulis, John Brinckerhoff, Bruce Keafer, Lauren Henry, Hovey Clifford, and Judy Kleindinst for logistical and laboratory support and assistance. Finally, we acknowledge the generous support and assistance provided by Captain Klaus Bergman and crew of the RV 'Maria S. Merian' throughout the cruise.	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Ecol.-Prog. Ser.	APR 7	2016	547						33	46		10.3354/meps11660	http://dx.doi.org/10.3354/meps11660			14	Ecology; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology; Oceanography	DJ5IT	27721528	Green Submitted, Green Accepted			2025-03-11	WOS:000374241200003
J	Elshanawany, R; Zonneveld, KAF				Elshanawany, Rehab; Zonneveld, Karin A. F.			Dinoflagellate cyst distribution in the oligotrophic environments of the Gulf of Aqaba and northern Red Sea	MARINE MICROPALEONTOLOGY			English	Article						Dinoflagellate cysts; Gulf of Aqaba; Northern Red Sea; Oligotrophic environment	SURFACE SEDIMENTS; PHYTOPLANKTON DYNAMICS; MEDITERRANEAN-SEA; UPWELLING SYSTEM; BRITISH-COLUMBIA; HIGH-LATITUDES; FRESH-WATER; ASSEMBLAGES; MARINE; BAY	Oligotrophic environmental systems form a major part of the marine aquatic environments on earth. Compared to mesotrophic and eutrophic environments extremely little information is available about the relationship between the distribution of organic-walled dinoflagellate cysts and physical and biological gradients in the upper water column. Here we present the first comprehensive study of the modern geographic distribution of organic-walled dinoflagellate cysts in the oligotrophic environments of the northern Red Sea and Gulf of Aqaba. We show that sediments of both regions have characteristic dinoflagellate cyst associations consisting of both heterotrophic and phototrophic species of which the latter, including both autotrophic and mixotrophic species, form the major part of the associations in both regions. The upper water environment of the Gulf of Aqaba is characterized by slightly enhanced nutrient concentrations compared to the Red Sea, due to water column mixing in winter. Its phytoplankton composition is dominated by pico- and ultra-plankton and a slight higher amount of eukaryotes compared to northern Red Sea. Its sedimentary cyst associations are characterized by higher relative and absolute abundances of the species Brigantedinium spp., Votadinium calvum, Echinidinium spp., Lingulodinium machaerophorum, Spiniferites spp., Spiniferites bentorii, Spiniferites membranaceus and Spiniferites mirabilis. Sediments of the northern Red Sea are characterized by high relative abundances of Impagidinium aculeatum, Impagidinium sphaericum, Operculodinium israelianum, Operculodinium longispinigerum, Operculodinium centrocarpum, cysts of Pentapharsodinium dalei, and Selenopemphix nephroides. A positive relationship between the distribution of the heterotrophic species Brigantedinium spp., Echinidinium spp. and V. calvum with the occurrence of other eukaryotic groups such as e.g. diatoms is documented. The distribution of S. nephroides cannot be related to the presence of diatom occurrences and it is suggested that the distribution of food sources other than diatoms affects its distribution. We document a positive relationship between the sedimentary distribution of the phototrophic dinoflagellate species L machaeropho rum and Spiniferites species and the abundance of the cyanobacteria Synechococcus in the water column. Since Synechococcus is known to be a potential prey of Lingulodinium polyedrum and members of the Gonyaulax spinifera complex (the motile forms producing these cysts) we suggest a possible cyst distribution-prey relationship of mixotrophic dinoflagellates. (C) 2016 Elsevier B.V. All rights reserved.	[Elshanawany, Rehab; Zonneveld, Karin A. F.] Univ Bremen, MARUM, Leobener Str, D-28359 Bremen, Germany; [Elshanawany, Rehab] Univ Alexandria, Fac Sci, Baghdad St, Moharam Bey 21511, Egypt; [Zonneveld, Karin A. F.] Univ Bremen, Fachbereich Geowissensch 5, Postfach 330440, D-28334 Bremen, Germany	University of Bremen; Egyptian Knowledge Bank (EKB); Alexandria University; University of Bremen	Zonneveld, KAF (通讯作者)，Univ Bremen, MARUM, Leobener Str, D-28359 Bremen, Germany.	rehab_shanawany@yahoo.com			German Science Foundation (DFG); Egyptian Cultural Affairs and Missions Sector	German Science Foundation (DFG)(German Research Foundation (DFG)); Egyptian Cultural Affairs and Missions Sector(Ministry of Higher Education & Scientific Research (MHESR))	This research is funded by the German Science Foundation (DFG) funded centre of excellence MARUM and the Egyptian Cultural Affairs and Missions Sector in form of a scholarship of Dr. R. Elshanawany.	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Micropaleontol.	APR	2016	124						29	44		10.1016/j.marmicro.2016.01.003	http://dx.doi.org/10.1016/j.marmicro.2016.01.003			16	Paleontology	Science Citation Index Expanded (SCI-EXPANDED)	Paleontology	DL6GK					2025-03-11	WOS:000375737500003
J	Han, M; Lee, H; Anderson, DM; Kim, B				Han, Myungsoo; Lee, Haeok; Anderson, Donald M.; Kim, Baikho			Paralytic shellfish toxin production by the dinoflagellate <i>Alexandrium pacificum</i> (Chinhae Bay, Korea) in axenic, nutrient-limited chemostat cultures and nutrient-enriched batch cultures	MARINE POLLUTION BULLETIN			English	Article						Alexandrium pacificum; Batch cultures; Chemostat; Dinoflagellate; Nutrient enrichment and limitation; PSP toxin	PROTOGONYAULAX-TAMARENSIS; PHOSPHORUS LIMITATION; ANTIBIOTIC TREATMENTS; GENUS ALEXANDRIUM; GENETIC-MARKERS; RESTING CYSTS; CELL-CYCLE; GROWTH; TOXICITY; FUNDYENSE	Blooms of Alexandrium pacificum (formerly Alexandrium tamarense) are common in Chinhae Bay (Korea), presumably linked to anthropogenic eutrophication. Here we examine PSP toxin content and composition in axenic chemostat and batch cultures of A. pacificum using growth conditions that differed according to dilution rate, nutrient limitations, and enrichments. Phosphate (P)-limited cells in chemostat cultures had higher toxin content and a toxin composition that differed from that of nitrogen (N)-limited cells at the highest growth rates. Therefore, toxin composition changes do occur in axenic cultures of A. pacificum following extended growth under steady state conditions. In nutrient -limited batch cultures that received N and P enrichment, the N-enriched cultures showed a more diverse toxin profile than the P-enriched cells; the toxin content of N-enriched cells was lower than in the P-enriched cultures. We infer the following order for the biosynthesis of individual toxins: C1, C2 > GTX3 > GTX1 > neoSTX. (C) 2016 Elsevier Ltd. All rights reserved.	[Han, Myungsoo; Lee, Haeok; Kim, Baikho] Hanyang Univ, Dept Life Sci, Seoul 04763, South Korea; [Anderson, Donald M.] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA	Hanyang University; Woods Hole Oceanographic Institution	Kim, B (通讯作者)，Hanyang Univ, Dept Life Sci, Seoul 04763, South Korea.	tigerk@hanyang.ac.kr	Kim, Baik-Ho/D-9356-2011		Hanyang University [HY-201200000000731-N]; National Science Foundation [OCE-1314642]; National Institute of Environmental Health Sciences [1-P01-ES021923-01]; Woods Hole Center for Oceans and Human Health; Directorate For Geosciences; Division Of Ocean Sciences [1314642] Funding Source: National Science Foundation	Hanyang University; National Science Foundation(National Science Foundation (NSF)); National Institute of Environmental Health Sciences(United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Environmental Health Sciences (NIEHS)); Woods Hole Center for Oceans and Human Health; Directorate For Geosciences; Division Of Ocean Sciences(National Science Foundation (NSF)NSF - Directorate for Geosciences (GEO))	This work was supported by the research fund of Hanyang University (HY-201200000000731-N). The authors would like to thank Prof. Omura of Tokyo University of Fisheries for his kind advice regarding the culture of axenic Alexandrium. Support for D. M. Anderson was provided through the Woods Hole Center for Oceans and Human Health, National Science Foundation Grant OCE-1314642 and National Institute of Environmental Health Sciences Grant 1-P01-ES021923-01.	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Pollut. Bull.	MAR 15	2016	104	1-2					34	43		10.1016/j.marpolbul.2016.01.057	http://dx.doi.org/10.1016/j.marpolbul.2016.01.057			10	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	DJ4SK	26874747	Green Accepted, Bronze			2025-03-11	WOS:000374198100017
J	Hayashi, A; Crombie, A; Lacey, E; Richardson, AJ; Vuong, D; Piggott, AM; Hallegraeff, G				Hayashi, Aiko; Crombie, Andrew; Lacey, Ernest; Richardson, Anthony J.; Vuong, Daniel; Piggott, Andrew M.; Hallegraeff, Gustaaf			<i>Aspergillus Sydowii</i> Marine Fungal Bloom in Australian Coastal Waters, Its Metabolites and Potential Impact on <i>Symbiodinium</i> Dinoflagellates	MARINE DRUGS			English	Article						secondary metabolites; Aspergillus sydowii; coral disease; Symbiodinium; maximum quantum yield (F-v/F-m); sydowinol; sydowinin; sydonic acid; sydonol	GORGONIA-VENTALINA; SEA FANS; PATHOGEN; ZOOXANTHELLAE; TEMPERATURE; DIVERSITY; HEALTHY; DUST	Dust has been widely recognised as an important source of nutrients in the marine environment and as a vector for transporting pathogenic microorganisms. Disturbingly, in the wake of a dust storm event along the eastern Australian coast line in 2009, the Continuous Plankton Recorder collected masses of fungal spores and mycelia (~150,000 spores/m(3)) forming a floating raft that covered a coastal area equivalent to 25 times the surface of England. Cultured A. sydowii strains exhibited varying metabolite profiles, but all produced sydonic acid, a chemotaxonomic marker for A. sydowii. The Australian marine fungal strains share major metabolites and display comparable metabolic diversity to Australian terrestrial strains and to strains pathogenic to Caribbean coral. Secondary colonisation of the rafts by other fungi, including strains of Cladosporium, Penicillium and other Aspergillus species with distinct secondary metabolite profiles, was also encountered. Our bioassays revealed that the dust-derived marine fungal extracts and known A. sydowii metabolites such as sydowic acid, sydowinol and sydowinin A adversely affect photophysiological performance (F-v/F-m) of the coral reef dinoflagellate endosymbiont Symbiodinium. Different Symbiodinium clades exhibited varying sensitivities, mimicking sensitivity to coral bleaching phenomena. The detection of such large amounts of A. sydowii following this dust storm event has potential implications for the health of coral environments such as the Great Barrier Reef.	[Hayashi, Aiko; Hallegraeff, Gustaaf] Univ Tasmania, Inst Marine & Antarctic Studies, Hobart, Tas 7004, Australia; [Crombie, Andrew; Lacey, Ernest; Vuong, Daniel] Microbial Screening Technol, Bldg A,28-54 Percival Rd, Smithfield, NSW 2164, Australia; [Richardson, Anthony J.] CSIRO Marine & Atmospher Res, Ecosci Precinct, Brisbane, Qld 4102, Australia; [Richardson, Anthony J.] Univ Queensland, Sch Math & Phys, Ctr Applicat Nat Resource Math, St Lucia, Qld 4072, Australia; [Piggott, Andrew M.] Macquarie Univ, Dept Chem & Biomol Sci, Sydney, NSW 2109, Australia	University of Tasmania; Commonwealth Scientific & Industrial Research Organisation (CSIRO); University of Queensland; Macquarie University	Hallegraeff, G (通讯作者)，Univ Tasmania, Inst Marine & Antarctic Studies, Hobart, Tas 7004, Australia.	aiko.hayashi@utas.edu.au; acrombie@microbialscreening.com; elacey@microbialscreening.com; anthony.richardson@csiro.au; dvuong@microbialscreening.com; andrew.piggott@mq.edu.au; gustaaf.hallegraeff@utas.edu.au	; Piggott, Andrew/G-9259-2012; Hallegraeff, Gustaaf/C-8351-2013; Richardson, Anthony/B-3649-2010	Vuong, Daniel/0000-0002-2451-3148; Piggott, Andrew/0000-0002-5308-5314; Crombie, Andrew/0000-0003-3985-1681; Hallegraeff, Gustaaf/0000-0001-8464-7343; Richardson, Anthony/0000-0002-9289-7366; Hayashi, Aiko/0000-0002-7348-9682	Australian Research Council [DP130102725, FT130100142]	Australian Research Council(Australian Research Council)	Hiromitsu Nakajia, Tottori University, Japan, kindly provided us with four typical A. sydowii metabolites. Drew Harvell, Cornell University, USA, provided us with two pathogenic Caribbean A. sydowii strains. John Pitt and Ailsa Hocking for the provision of A. sydowii strains from the CSIRO FRR collection. This work was funded by the Australian Research Council (DP130102725, FT130100142).	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Drugs	MAR	2016	14	3								10.3390/md14030059	http://dx.doi.org/10.3390/md14030059			14	Chemistry, Medicinal; Pharmacology & Pharmacy	Science Citation Index Expanded (SCI-EXPANDED)	Pharmacology & Pharmacy	DI7SB	26999164	Green Published, Green Accepted, gold, Green Submitted			2025-03-11	WOS:000373701200011
J	Triki, HZ; Laabir, M; Moeller, P; Chomérat, N; Daly-Yahia, OK				Triki, Habiba Zmerli; Laabir, Mohamed; Moeller, Peter; Chomerat, Nicolas; Daly-Yahia, Ons Kefi			First report of goniodomin A production by the dinoflagellate <i>Alexandrium pseudogonyaulax</i> developing in southern Mediterranean (Bizerte Lagoon, Tunisia)	TOXICON			English	Article						Alexandrium pseudogonyaulax; Goniodomin A; Mediterranean sea; Morphology; Phylogeny	POTENTIALLY TOXIC DINOFLAGELLATE; LIFE-HISTORY; POLYETHER MACROLIDE; GENUS ALEXANDRIUM; UNITED-STATES; RESTING CYSTS; COAST; PSEUDOGONIAULAX; DINOPHYCEAE; MONILATUM	The dinoflagellate Alexandrium pseudogonyaulax is widely distributed around the world including the Mediterranean waters. The objectives of this study were to determine the morphology and phylogenic affiliation of A. pseudogonyaulax strain isolated from Bizerte Lagoon (Mediterranean waters, Tunisia) and investigate its toxicity. Molecular analyses confirmed the morphological identification of the isolated strain (APBZ12) as A. pseudogonyaulax. Moreover, it showed that it is 100% identical with strains of this species found in New Zealand, Japan, China and North Sea (Norway and Denmark) suggesting that this species is cosmopolitan. Until now, no toxin studies have been conducted on fully characterized (morphologically and molecularly) A. pseudogonyaulax. Cellular toxin production was determined using high pressure liquid chromatography coupled to mass spectrometry (HPLC/MS). Results showed for the first time that A. pseudogonyaulax contains goniodomin A (GDA), a highly toxic. macrolide polyether previously shown to be produced by two other dinoflagellate species Alexandrium monilatum (Hsia et al., 2006) and Alexandrium hiranoi (erroneously identified as A. pseudogonyaulax in Murakami et al., 1988) in American and Japanese waters, respectively. This biologically active toxin has been associated over decades with fish mortality. Our study showed that the cell extracts of APBZ12 showed an important bioactivity using GH4C1 rat pituitary cytotoxicity bioassay. (C) 2016 Elsevier Ltd. All rights reserved.	[Triki, Habiba Zmerli; Daly-Yahia, Ons Kefi] Carthage Univ, IRESA, INAT, UR Marine Biol FST El Manar I, 43 Ave Charles Nicolle, Tunis 1082, Tunisia; [Laabir, Mohamed] Univ Montpellier, IRD, IFREMER, UMR 9190,MARBEC,CNRS, Pl Eugene Bataillon,Case 093, F-34095 Montpellier 5, France; [Moeller, Peter] NOAA, Toxin Nat Prod Chem Program, Natl Ocean Serv, Hollings Marine Lab, 331 Ft Johnson Rd, Charleston, SC 29412 USA; [Chomerat, Nicolas] IFREMER, Stn Biol Marine, Lab Environm & Ressources Bretagne Occidentale, Pl Croix, F-29900 Concarneau, France	Universite de Carthage; Ifremer; Centre National de la Recherche Scientifique (CNRS); Universite de Montpellier; Institut de Recherche pour le Developpement (IRD); National Oceanic Atmospheric Admin (NOAA) - USA; National Ocean Service, NOAA; Ifremer	Triki, HZ (通讯作者)，Carthage Univ, IRESA, INAT, UR Marine Biol FST El Manar I, 43 Ave Charles Nicolle, Tunis 1082, Tunisia.	bibarouma@hotmail.fr		Chomerat, Nicolas/0000-0001-9691-6344; Kefi Daly Yahia, Ons/0000-0001-9532-8989	JEAI ECOBIZ (Jeune Equipe Associee, Ecologie de la lagune de Bizerte) program; LMI COSYS-MED - IRD (Institut Francais pour la Recherche et le Developpement); LAGUNTOX project - TOTAL Foundation; IRD; Toxin/Natural Products Chemistry Program (NOAA, USA)	JEAI ECOBIZ (Jeune Equipe Associee, Ecologie de la lagune de Bizerte) program; LMI COSYS-MED - IRD (Institut Francais pour la Recherche et le Developpement); LAGUNTOX project - TOTAL Foundation; IRD; Toxin/Natural Products Chemistry Program (NOAA, USA)	This work benefitted from financial supports of the JEAI ECOBIZ (Jeune Equipe Associee, Ecologie de la lagune de Bizerte) program and LMI COSYS-MED funded by IRD (Institut Francais pour la Recherche et le Developpement) and from LAGUNTOX project funded by TOTAL Foundation. Thanks to IRD for funding M. LAABIR stay in Tunisia. The Toxin/Natural Products Chemistry Program (NOAA, USA) provided support and analysis of toxins. The authors wish to thank G. Bilien for DNA amplification and sequencing.	Abe M, 2002, J CELL PHYSIOL, V190, P109, DOI 10.1002/jcp.10040; Anderson DM, 2012, HARMFUL ALGAE, V14, P10, DOI 10.1016/j.hal.2011.10.012; [Anonymous], 2004, B I NATN SCI TECH ME; Balech E., 1995, The genus Alexandrium Halim (Dinoflagellata); BASS EL, 1983, AQUAT TOXICOL, V3, P15, DOI 10.1016/0166-445X(83)90003-6; Biecheler B., 1952, Bull. Biol. Fr. 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J	Persson, A; Smith, BC; Cyronak, T; Cooper, E; DiTullio, GR				Persson, Agneta; Smith, Barry C.; Cyronak, Tyler; Cooper, Emily; DiTullio, Giacomo R.			Differences in pigmentation between life cycle stages in <i>Scrippsiella lachrymosa</i> (dinophyceae)	JOURNAL OF PHYCOLOGY			English	Article						accumulation body; dinoflagellate; gamete; life stage; pellicle cyst; pigment; resting cyst; Scrippsiella lachrymosa; zygote	DINOFLAGELLATE RESTING CYSTS; GONYAULAX-TAMARENSIS; POPULATION-DYNAMICS; MARINE-PHYTOPLANKTON; COMMUNITY STRUCTURE; CLASS ABUNDANCES; RECENT SEDIMENTS; BENTHIC CYSTS; DIMETHYLSULFONIOPROPIONATE; CAROTENOIDS	Various life cycle stages of cyst-producing dinoflagellates often appear differently colored under the microscope; gametes appear paler while zygotes are darker in comparison to vegetative cells. To compare physiological and photochemical competency, the pigment composition of discrete life cycle stages was determined for the common resting cyst-producing dinoflagellate Scrippsiella lachrymosa. Vegetative cells had the highest cellular pigment content ( 25.2 +/- 0.5 pg cell-1), whereas gamete pigment content was 22% lower. The pigment content of zygotes was 82% lower than vegetative cells, even though they appeared darker under the microscope. Zygotes of S. lachrymosa contained significantly higher cellular concentrations of beta- carotene ( 0.65 +/- 0.15 pg cell -1) than all other life stages. Photoprotective pigments and the de- epoxidation ratio of xanthophylls- cycle pigments in S. lachrymosa were significantly elevated in zygotes and cysts compared to other stages. This suggests a role for accessory pigments in combating intracellular oxidative stress during sexual reproduction or encystment. Resting cysts contained some pigments even though chloroplasts were not visible, suggesting that the brightly colored accumulation body contained photosynthetic pigments. The differences in pigmentation between life stages have implications for interpretation of pigment data from field samples when sampled during dinoflagellate blooms.	[Persson, Agneta] Univ Gothenburg, Dept Biol & Environm Sci, Box 461, SE-40530 Gothenburg, Sweden; [Smith, Barry C.] NOAA, Natl Marine Fisheries Serv, Northeast Fisheries Sci Ctr, Milford Lab, 212 Rogers Ave, Milford, CT 06460 USA; [Cyronak, Tyler; Cooper, Emily; DiTullio, Giacomo R.] Coll Charleston, Hollings Marine Lab, 331 Ft Johnson Rd, Charleston, SC 29412 USA; [Persson, Agneta] Smedjebacksvagen 13, SE-77190 Ludvika, Sweden	University of Gothenburg; National Oceanic Atmospheric Admin (NOAA) - USA; College of Charleston	Persson, A (通讯作者)，Univ Gothenburg, Dept Biol & Environm Sci, Box 461, SE-40530 Gothenburg, Sweden.; Persson, A (通讯作者)，Smedjebacksvagen 13, SE-77190 Ludvika, Sweden.	agnetapersson77@gmail.com		Persson, Agneta/0000-0003-0202-6514; Cyronak, Tyler/0000-0003-3556-7616	Signe och Olof Wallenius Foundation	Signe och Olof Wallenius Foundation	The Signe och Olof Wallenius Foundation provided financial support. We are grateful to Jennifer Alix for assistance with culturing as well as two anonymous reviewers and Dr. Gary H. Wikfors for manuscript advice. Mention of trade names does not imply endorsement.	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Phycol.	FEB	2016	52	1					64	74		10.1111/jpy.12364	http://dx.doi.org/10.1111/jpy.12364			11	Plant Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Plant Sciences; Marine & Freshwater Biology	DD6AB	26987089				2025-03-11	WOS:000370005000006
J	Hattenrath-Lehmann, TK; Zhen, Y; Wallace, RB; Tang, YZ; Gobler, CJ				Hattenrath-Lehmann, Theresa K.; Zhen, Yu; Wallace, Ryan B.; Tang, Ying-Zhong; Gobler, Christopher J.			Mapping the Distribution of Cysts from the Toxic Dinoflagellate <i>Cochlodinium polykrikoides</i> in Bloom-Prone Estuaries by a Novel Fluorescence <i>In Situ</i> Hybridization Assay	APPLIED AND ENVIRONMENTAL MICROBIOLOGY			English	Article							HARMFUL ALGAL BLOOMS; KOREAN COASTAL WATERS; RED TIDE BLOOMS; RIBOSOMAL-RNA; NEW-YORK; PHYLOGENETIC-RELATIONSHIPS; GONYAULAX-TAMARENSIS; SURFACE SEDIMENTS; ESCHERICHIA-COLI; CHESAPEAKE BAY	Cochlodinium polykrikoides is a cosmopolitan dinoflagellate that is notorious for causing fish-killing harmful algal blooms (HABs) across North America and Asia. While recent laboratory and ecosystem studies have definitively demonstrated that Cochlodinium forms resting cysts that may play a key role in the dynamics of its HABs, uncertainties regarding cyst morphology and detection have prohibited even a rudimentary understanding of the distribution of C. polykrikoides cysts in coastal ecosystems. Here, we report on the development of a fluorescence in situ hybridization (FISH) assay using oligonucleotide probes specific for the large subunit (LSU) ribosomal DNA (rDNA) of C. polykrikoides. The LSU rDNA-targeted FISH assay was used with epifluorescence microscopy and was iteratively refined to maximize the fluorescent reaction with C. polykrikoides and minimize cross-reactivity. The final LSU rDNA-targeted FISH assay was found to quantitatively recover cysts made by North American isolates of C. polykrikoides but not cysts formed by other common cyst-forming dinoflagellates. The method was then applied to identify and map C. polykrikoides cysts across bloom-prone estuaries. Annual cyst and vegetative cell surveys revealed that elevated densities of C. polykrikoides cysts (> 100 cm(-3)) during the spring of a given year were spatially consistent with regions of dense blooms the prior summer. The identity of cysts in sediments was confirmed via independent amplification of C. polykrikoides rDNA. This study mapped C. polykrikoides cysts in a natural marine setting and indicates that the excystment of cysts formed by this harmful alga may play a key role in the development of HABs of this species.	[Hattenrath-Lehmann, Theresa K.; Wallace, Ryan B.; Gobler, Christopher J.] SUNY Stony Brook, Sch Marine & Atmospher Sci, Southampton, NY USA; [Zhen, Yu] Ocean Univ China, Coll Environm Sci & Engn, Qingdao, Peoples R China; [Zhen, Yu] Ocean Univ China, Minist Educ, Key Lab Marine Environm & Ecol, Qingdao, Peoples R China; [Tang, Ying-Zhong] Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China	State University of New York (SUNY) System; Stony Brook University; Ocean University of China; Ocean University of China; Chinese Academy of Sciences; Institute of Oceanology, CAS	Gobler, CJ (通讯作者)，SUNY Stony Brook, Sch Marine & Atmospher Sci, Southampton, NY USA.; Tang, YZ (通讯作者)，Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China.	yingzhong.tang@qdio.ac.cn; christopher.gobler@stonybrook.edu	Wallace, Ryan/AGW-6884-2022; ZHEN, YU/E-3247-2014; Gobler, Christopher/JOZ-2924-2023		New York Sea Grant, State University of New York [R/CMB-40]; New York Sea Grant [R/CMB-40]; Laurie Landeau Foundation; Simons Foundation	New York Sea Grant, State University of New York; New York Sea Grant; Laurie Landeau Foundation; Simons Foundation	New York Sea Grant, State University of New York provided funding to Christopher Gobler under grant number R/CMB-40. Laurie Landeau Foundation provided funding to Christopher Gobler. Simons Foundation provided funding to Christopher Gobler.r This research was supported by New York Sea Grant Award R/CMB-40 to C.J.G. We also acknowledge the continued and generous support of the Laurie Landeau Foundation and Simons Foundation. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.	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Environ. Microbiol.	FEB	2016	82	4					1114	1125		10.1128/AEM.03457-15	http://dx.doi.org/10.1128/AEM.03457-15			12	Biotechnology & Applied Microbiology; Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Biotechnology & Applied Microbiology; Microbiology	DC7CJ	26637596	Green Published, Bronze			2025-03-11	WOS:000369375900014
J	Kremp, A; Oja, J; LeTortorec, AH; Hakanen, P; Tahvanainen, P; Tuimala, J; Suikkanen, S				Kremp, Anke; Oja, Johanna; LeTortorec, Anniina H.; Hakanen, Paivi; Tahvanainen, Pia; Tuimala, Jarno; Suikkanen, Sanna			Diverse seed banks favour adaptation of microalgal populations to future climate conditions	ENVIRONMENTAL MICROBIOLOGY			English	Article							ALEXANDRIUM-OSTENFELDII DINOPHYCEAE; GENETIC DIVERSITY; TOXIN PRODUCTION; TEMPERATURE; EVOLUTIONARY; GROWTH; BLOOM; BIOLUMINESCENCE; VARIABILITY; RESPONSES	Selection of suitable genotypes from diverse seed banks may help phytoplankton populations to cope with environmental changes. This study examines whether the high genotypic diversity found in the Baltic cyst pool of the toxic dinoflagellate Alexandrium ostenfeldii is coupled to phenotypic variability that could aid short-term adaptation. Growth rates, cellular toxicities and bioluminescence of 34 genetically different clones isolated from cyst beds of four Baltic bloom sites were determined in batch culture experiments along temperature and salinity gradients covering present and future conditions in the Baltic Sea. For all parameters a significant effect of genotype on the response to temperature and salinity changes was identified. General or site-specific effects of the two factors remained minor. Clones thriving at future conditions were different from the best performing at present conditions, suggesting that genotypic shifts may be expected in the future. Increased proportions of highly potent saxitoxin were observed as a plastic response to temperature increase, indicating a potential for higher toxicity of future blooms. The observed standing variation in Baltic seed banks of A.ostenfeldii suggests that the population is likely to persist under environmental change.	[Kremp, Anke; Oja, Johanna; LeTortorec, Anniina H.; Hakanen, Paivi; Tahvanainen, Pia; Suikkanen, Sanna] Finnish Environm Inst, Marine Res Ctr, Helsinki 00251, Finland; [LeTortorec, Anniina H.; Tahvanainen, Pia] Univ Helsinki, Tvarminne Zool Stn, Hango 10900, Finland; [Tuimala, Jarno] Finnish Tax Adm, Haapaniemenkatu 4, Vero 00052, Finland	Finnish Environment Institute; University of Helsinki	Kremp, A (通讯作者)，Finnish Environm Inst, Marine Res Ctr, Helsinki 00251, Finland.	anke.kremp@ymparisto.fi		Le Tortorec, Anniina/0000-0002-9397-8328; Suikkanen, Sanna/0000-0002-0768-8149	Academy of Finland [128833, 251564, 259357, 132409]; Walter and Andree de Nottbeck Foundation; Finnish Cultural Foundation; Academy of Finland (AKA) [251564, 259357, 132409] Funding Source: Academy of Finland (AKA)	Academy of Finland(Research Council of Finland); Walter and Andree de Nottbeck Foundation; Finnish Cultural Foundation(Finnish Cultural FoundationFinnish IT center for science); Academy of Finland (AKA)(Research Council of Finland)	This study was financially supported by the Academy of Finland (grants #128833 and 251564 to AK, #259357 to SS, #132409 to AHL), the Walter and Andree de Nottbeck Foundation (PT) and the Finnish Cultural Foundation (PH).	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J	Moczydlowska, M				Moczydlowska, Malgorzata			Algal affinities of Ediacaran and Cambrian organic-walled microfossils with internal reproductive bodies: <i>Tanarium</i> and other morphotypes	PALYNOLOGY			English	Article						organic-walled microfossils; Ediacaran; Cambrian; zygotic cysts; phycoma; Chlorophyceae; Prasinophyceae	HORIZONTAL GENE-TRANSFER; CELL-WALL; ACANTHOMORPHIC ACRITARCHS; DOUSHANTUO FORMATION; MOLECULAR FOSSILS; OFFICER-BASIN; CHUAR GROUP; BIOLOGICAL AFFINITIES; LEVEL CLASSIFICATION; EVOLUTIONARY HISTORY	Organically preserved, unicellular microfossils of Ediacaran and Cambrian age, which comprise single and multiple internal bodies within the vesicle, have been studied with a view towards explaining the origin and function of these structures. Assessed by body plan, ornamentation, excystment structure, cell wall resistance and ultrastructure (where available), and newly observed internal bodies defined by their own, robust wall, these microfossils are recognised as algal zygotic cysts and phycomata by comparison with extant green algae. Although rare, these internal bodies are a persistent feature of specific morphotypes regardless of geological age, and are reviewed. Internal bodies are a part of reproductive cysts, resembling those known in different clades of green algae: prasinophytes, chlorophytes and streptophytes, as well as alveolates (including dinoflagellates). They are inferred to be endocysts containing zygotes and/or sacs of swarmers, if single, or offspring cells (spores), if multiple, in sexual and asexual generations of ancient taxa of the classes Prasinophyceae and Chlorophyceae. It may not be excluded, however, that they represent the earliest, stem-group streptophytes or alveolates. The diagnoses of the Ediacaran taxa Ancorosphaeridium, A. magnum, Densisphaera, D. arista, D. fistulosa, Multifronsphaeridium ramosum and Tanarium tuberosum are emended to include the internal bodies as integral morphological structures of microfossils, and to abandon the erroneous identification of the double wall of the vesicle. Based on the earliest occurrence of microfossils with an internal body in the Dictyosphaera-Shuiyousphaeridium plexus, sexual reproduction among photosynthesising microbiota is interpreted at c. 1.6-1.4 Ga, a common phenomenon in the Ediacaran (Tanarium, Ancorosphaeridium, Densisphaera), and dominant in the Cambrian (Skiagia, Polygonium and many others) periods.	[Moczydlowska, Malgorzata] Uppsala Univ, Dept Earth Sci, Palaeobiol, Villavagen 16, SE-75236 Uppsala, Sweden	Uppsala University	Moczydlowska, M (通讯作者)，Uppsala Univ, Dept Earth Sci, Palaeobiol, Villavagen 16, SE-75236 Uppsala, Sweden.	malgo.vidal@pal.uu.se			Swedish Research Council (VR) [621-2012-1669]	Swedish Research Council (VR)(Swedish Research Council)	The study was supported by research grant no. 621-2012-1669 from the Swedish Research Council (VR). I greatly appreciated discussions on phytoplankton diversity and origins with Kath Grey (Perth), Konstantin Nagovitsin (Novosibirsk), Sebastian Willman and Heda Agic (Uppsala); however, the views expressed here are my own responsibility. Marien van Westen (Groningen), Pavel Skaloud (Praha) and Vera Pospelova (Victoria) kindly provided images of modern algae from their collections. I especially thank Reed Wicander for his comments and thorough reading of the manuscript, and the anonymous reviewer for useful suggestions. I acknowledge discussions with the Editor Jim Riding on various aspects of fossil algae, and his editorial work.	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J	Luo, ZH; You, XJ; Mertens, KN; Gu, HF				Luo, Zhaohe; You, Xuejing; Mertens, Kenneth Neil; Gu, Haifeng			Morphological and molecular characterization of <i>Tovellia</i> cf. <i>aveirensis</i> (Dinophyceae) from Jiulong River, China	NOVA HEDWIGIA			English	Article						Cyst; freshwater dinoflagellate; Gymnodinium dodgei; type C eyespot; Woloszynskia	SP-NOV DINOPHYCEAE; GEN. NOV; ALEXANDRIUM DINOPHYCEAE; ELECTRON-MICROSCOPY; LAKE TOVEL; PHYLOGENY; ULTRASTRUCTURE; GENERA; CYSTS; CONVERGENCE	The dinoflagellate genus Tovellia is exclusively freshwater and characterized by the presence of an extraplastidial eyespot (Type C sensu Moestrup & Daugbjerg), a straight apical line of narrow plates (ALP) and a bipolar cyst with axial horns. Here we establish a Tovellia strain TSJL01 through incubation of a cyst with a pronounced paracingulum and bearing long, hollow and tapering processes collected from Jiulong River (China). The morphology of motile cells and cysts was investigated using light microscopy, scanning electron microscopy and transmission electron microscopy. Cells of strain TSJLO1 possess a long ALP on the apex, with 10 or 11 narrow elongated vesicles lined at each side. The amphiesma has many pentagonal or hexagonal latitudinal vesicles, with 7-10 series on the epicone, 4-5 on the hypocone and 2 in the cingulum. Thin sections reveal a type C eyespot, and numerous chloroplasts radiating from a central pyrenoid complex. Cysts produced in culture differ from those observed in the field in the shape of their processes. Phylogenetic analyses based on large subunit ribosomal DNA (LSU rDNA) support that TSJL01 is nested within the genus Tovellia, and is closely related to T. aveirensis. The Chinese strain differs from T aveirensis mainly in the number of elongated plates surrounding ALP and thus was tentatively identified as T. cf. aveirensis. Another closely related species, Gymnodinium dodgei, is transferred to Tovellia based on the eyespot and cyst morphology.	[Luo, Zhaohe; You, Xuejing; Gu, Haifeng] SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China; [Luo, Zhaohe] Jinan Univ, Coll Life Sci & Technol, Guangzhou 510632, Guangdong, Peoples R China; [You, Xuejing] Fujian Normal Univ, Fuzhou 350007, Peoples R China; [Mertens, Kenneth Neil] IFREMER, LER BO, Stn Biol Marine, Pl Croix,BP40537, F-29185 Concarneau, France	Third Institute of Oceanography, Ministry of Natural Resources; Jinan University; Fujian Normal University; Ifremer	Gu, HF (通讯作者)，SOA, Inst Oceanog 3, Xiamen 361005, Peoples R China.	guhaifeng@tio.org.cn	Mertens, Kenneth/AAO-9566-2020; Luo, Zhaohe/ITT-7163-2023; Gu, Haifeng/ADN-4528-2022; Mertens, Kenneth/C-3386-2015	Luo, Zhaohe/0000-0001-8662-2414; Gu, Haifeng/0000-0002-2350-9171; Mertens, Kenneth/0000-0003-2005-9483	National Natural Science Foundation of China [41376170, 41306171]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC))	This project was supported by National Natural Science Foundation of China (41376170, 41306171). 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J	Xu, JZ; Wu, XH; Yang, YJ; Xu, S; Kang, YH; Fu, XL; Yue, H; Shi, JQ; Wu, ZX				Xu, Jinzhu; Wu, XingHua; Yang, Yanjun; Xu, Sha; Kang, Yuanhao; Fu, Xiaoli; Yue, Hong; Shi, Junqiong; Wu, Zhongxing			Changes in growth, photosynthesis and chlorophyll fluorescence in the freshwater dinoflagellate <i>Peridinium umbonatum</i> (Peridiniales, Pyrrophyta) in response to different temperatures	PHYCOLOGIA			English	Article						Chlorophyll; Fluorescence; OJIP curve; Peridinium umbonatum; Photosynthesis; Temperature	HARMFUL ALGAL BLOOMS; PHOTOSYSTEM-II; BROWN TIDE; ANOPHAGEFFERENS; ECOSYSTEMS; IRRADIANCE; MULTIPLE	Peridinium umbonatum causes harmful algal blooms in freshwater ecosystems; however, environmental conditions that promote accelerated growth and blooming of this organism have not been resolved. Increasing global temperatures has been suggested as a possible factor for shifts in phytoplankton composition to more harmful species. Therefore, this study investigated the physiological responses of this freshwater dinoflagellate to different temperatures, a factor that will strongly be affected by future climate change scenarios. Specific growth rates of P. umbonatum were markedly lower at 10 degrees C and 14 degrees C than at 18 degrees C, 25 degrees C and 30 degrees C, with the highest growth rate measured at 18 degrees C. Cell mobility was significantly inhibited at 10 degrees C and 14 degrees C. The maximum photochemical efficiency (Fv/Fm) of photosystem II and maximum relative electron transport rate decreased significantly at temperatures below 14 degrees C. However, nonphotochemical quenching significantly increased at 10 degrees C and 14 degrees C. Variable fluorescence at phase J increased in chlorophyll a fluorescence transients for P. umbonatum grown at 10 degrees C and 14 degrees C. The density of reaction centres and quantum energy flux ratios increased with increasing temperature, whereas the absorption and trapping energy flux, as well as the relative variable fluorescence intensity at the J-step, decreased with increasing temperature. These results suggest that low temperatures inhibit photosynthesis in P. umbonatum, resulting in low specific growth rates and increased cell immobility. This finding suggests that exposure to a temperature of 18 degrees C plays an important role in the growth and cyst germination of Peridinium, implying that increasing temperature might promote dinoflagellate Peridinium blooms.	[Xu, Jinzhu; Yang, Yanjun; Xu, Sha; Kang, Yuanhao; Fu, Xiaoli; Yue, Hong; Shi, Junqiong; Wu, Zhongxing] Southwest Univ, Key Lab Ecoenvironm Three Gorges Reservoir Reg, Minist Educ,Sch Life Sci, Chongqing Key Lab Plant Ecol & Resources Res Thre, Chongqing 400715, Peoples R China; [Wu, XingHua] Hubei Acad Environm Sci, Wuhan 430000, Hubei, Peoples R China	Southwest University - China	Wu, ZX (通讯作者)，Southwest Univ, Key Lab Ecoenvironm Three Gorges Reservoir Reg, Minist Educ,Sch Life Sci, Chongqing Key Lab Plant Ecol & Resources Res Thre, Chongqing 400715, Peoples R China.	wuzhx@swu.edu.cn	sha, xu/LOS-6846-2024	wu, zhong xing/0000-0002-2789-2200	National Natural Science Foundation of China [41301097, 31170372]; Fundamental Research Funds for the Central Universities [XDJK2016C111]; National science and technology major project on water pollution control and treatment [2012X07104-002]; Doctoral Found Project of China SWU [SWU110065]	National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)); Fundamental Research Funds for the Central Universities(Fundamental Research Funds for the Central Universities); National science and technology major project on water pollution control and treatment; Doctoral Found Project of China SWU	We are grateful to anonymous reviewers for helpful comments and suggestions on the manuscript. The study was supported by the National Natural Science Foundation of China (41301097 and 31170372), Fundamental Research Funds for the Central Universities (XDJK2016C111), National science and technology major project on water pollution control and treatment (2012X07104-002) and the Doctoral Found Project of China SWU (SWU110065).	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J	Jung, JH; Choi, JM; Coats, DW; Kim, YO				Jung, Jae-Ho; Choi, Jung Min; Coats, D. Wayne; Kim, Young-Ok			<i>Euduboscquella costata</i> n. sp (Dinoflagellata, Syndinea), an Intracellular Parasite of the Ciliate <i>Schmidingerella arcuata</i>: Morphology, Molecular Phylogeny, Life Cycle, Prevalence, and Infection Intensity	JOURNAL OF EUKARYOTIC MICROBIOLOGY			English	Article						18S ribosomal RNA; marine intracellular parasite; plankton; Syndinean dinoflagellate; tintinnid	DUBOSCQUELLA-CACHONI; FAVELLA-PANAMENSIS; DIVERSITY	The syndinean dinoflagellate Euduboscquella costata n. sp., an intracellular parasite of the tintinnid ciliate Schmidingerella arcuata, was discovered from Korean coastal water in November of 2013. Euduboscquella costata parasitized in about 62% of the host population, with infection intensity (- number of trophonts in a single host cell) ranging from 1 to 8. Based on morphology and nuclear 18S ribosomal RNA gene sequences, the parasite is new to science. Euduboscquella costata n. sp. had an infection cycle typical of the genus, but had morphological and developmental features that distinguished it from congeneric species. These features include: (1) episome of the trophont with 2540 grooves converging toward the center of the shield; (2) a narrow, funnel-shaped lamina pharyngea extending from the margin of the episomal shield to the nucleus; (3) persistence of grooves during extracellular development (sporogenesis); (4) a single food vacuole during sporogenesis; (5) separation of sporocytes early in sporogenesis, regardless of type of spore formed; and (6) dinospore size (ca. 14 mu m in length) and shape (bulbous episome with narrower, tapering hyposome). After sporogenesis, E. costata produced four different types of spore that showed completely identical 18S rRNA gene sequences. The gene sequence was completely identical with a previously reported population, Euduboscquella sp. ex S. arcuata, from Assawoman Bay, USA, indicating that the two populations are likely conspecific. Favella ehrenbergii, a widely recorded tintinnid known to host Euduboscquella spp., co-occurred with S. arcuata, but was not infected by E. costata in field samples or during short-term, cross-infection experiments.	[Jung, Jae-Ho; Choi, Jung Min; Kim, Young-Ok] Korea Inst Ocean Sci & Technol, Jangmok Myon 656834, Geoje, South Korea; [Coats, D. Wayne] Smithsonian Environm Res Ctr, Edgewater, MD 21037 USA	Korea Institute of Ocean Science & Technology (KIOST); Smithsonian Institution; Smithsonian Environmental Research Center	Kim, YO (通讯作者)，Korea Inst Ocean Sci & Technol, 41 Jangmok 1, Jangmok Myon 656834, Geoje, South Korea.	yokim@kiost.ac	KIM, YOUNG JIN/E-9374-2011; Jung, Jae-Ho/L-2849-2016; Jung, Jae-Ho/G-2084-2011	Choi, Jung Min/0000-0003-4902-8453; Coats, D Wayne/0000-0002-0636-189X; Jung, Jae-Ho/0000-0001-5497-8678	KIOST project [PE99193]	KIOST project	This research was supported by KIOST projects (PE99193).	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Eukaryot. Microbiol.	JAN-FEB	2016	63	1					3	15		10.1111/jeu.12231	http://dx.doi.org/10.1111/jeu.12231			13	Microbiology	Science Citation Index Expanded (SCI-EXPANDED)	Microbiology	DA9LZ	25963420				2025-03-11	WOS:000368131600001
J	Fernández-Herrera, LJ; Band-Schmidt, CJ; López-Cortés, DJ; Hernández-Guerrero, CJ; Bustillos-Guzmán, JJ; Núñez-Vázquez, E				Fernandez-Herrera, Leyberth J.; Band-Schmidt, Christine J.; Lopez-Cortes, David J.; Hernandez-Guerrero, Claudia J.; Bustillos-Guzman, Jose J.; Nunez-Vazquez, Erick			Allelopathic effect of <i>Chattonella marina</i> var. <i>marina</i> (Raphidophyceae) on <i>Gymnodinium catenatum</i> (Dinophycea)	HARMFUL ALGAE			English	Article						Allelopathy; Chattonella marina; Gymnodinium catenatum; Mortality; Temporary cysts	GULF-OF-CALIFORNIA; RED-TIDE; DINOFLAGELLATE ALEXANDRIUM; TOXIC DINOFLAGELLATE; LIFE-CYCLE; MEXICAN PACIFIC; PHYTOPLANKTON; GROWTH; MECHANISMS; MICROALGAE	The allelopathic effect of the raphidophyte Chattonella marina var. marina on the dinoflagellate Gymnodinium catenatum was determined. Both species are harmful algal bloom forming algae, produce toxic metabolites, and can co-exist in the environment. In general, raphidophytes tend to dominate over dinoflagellates, which may indicate an allelopathic effect of the former algae. Strains of C. marina var. marina and G. catenatum isolated from Bahia de La Paz were cultured in bi-algal cultures with and without cell contact. Additionally, cultures of G. catenatum were exposed to cell-free culture filtrates of the raphidophyte to test whether soluble allelopathic molecules are active. During late stationary phase, both species were cultivated in mixed cultures for 72 h using the following cell abundance proportions: 20 x 10(3) cells L-1:20 x 10(3) cells L-1 (1:1; G. catenatum: C. marina); 10 x 10(3) cells L-1:20 x 10(3) cells L-1 (1:2), and 20 x 10(3) cells L-1:10 x 10(3) cells L-1 (2:1). Cells of G. catenatum were also exposed to different volumes of cell filtrates of C. marina (10, 20, and 50 mL) using the same cell abundance proportions for 24 h. Samples were taken daily for cell counts and microscopic observations. Growth inhibition was higher when there was cell contact between both species, however mortality of G. catenatum was also observed without direct cell contact, indicating that toxic metabolites are liberated to the culture medium. Changes in cell morphology of G. catenatum occurred in the presence of cells and filtrates of C. marina, such as loss of flagella and motility, swelling, loss of girdle and sulci, prominent nucleus, rupture of cell membrane, and cell lysis. Induction of temporary cysts was also observed. These results suggest that toxic metabolites are liberated to the medium by C. marina, affecting G. catenatum by inhibiting its growth and causing changes in its life history, providing new insights of interactions between raphidophytes and dinoflagellates that could happen in the natural environment when both species are present. (C) 2015 Elsevier B.V. All rights reserved.	[Fernandez-Herrera, Leyberth J.; Band-Schmidt, Christine J.; Hernandez-Guerrero, Claudia J.] Ctr Interdisciplinario Ciencias Marinas CICIMAR I, Dept Plancton & Ecol Marina, Apartado Postal 592, La Paz 23000, Bcs, Mexico; [Lopez-Cortes, David J.; Bustillos-Guzman, Jose J.; Nunez-Vazquez, Erick] Ctr Invest Biol Noroeste CIBNOR, Calle IPN 195, La Paz 23096, Bcs, Mexico	CIBNOR - Centro de Investigaciones Biologicas del Noroeste	Band-Schmidt, CJ (通讯作者)，Ctr Interdisciplinario Ciencias Marinas CICIMAR I, Dept Plancton & Ecol Marina, Apartado Postal 592, La Paz 23000, Bcs, Mexico.	cbands@ipn.mx	Hernandez-Guerrero, Claudia/AAD-9442-2020	Band-Schmidt, Christine Johanna/0000-0002-8251-9820; Nunez Vazquez, Erick Julian/0000-0003-1257-731X	Consejo Nacional de Ciencia y Tecnologia [CONACYT-SEP 178227]; CONACYT [267363, PIFI 1296, 2277, 1145];  [SIP 2015-1381];  [PC0.11];  [PC0.12]	Consejo Nacional de Ciencia y Tecnologia(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); CONACYT(Consejo Nacional de Ciencia y Tecnologia (CONACyT)); ; ; 	We thank Ira Fogel for editing services. This project was funded by institutional projects (SIP 2015-1381, PC0.11, and PC0.12), and by the Consejo Nacional de Ciencia y Tecnologia (CONACYT-SEP 178227). C.J.B.S. and C.J.H.G. are COFFA-IPN and EDI-IPN fellows. 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J	Bastianini, M; Totti, C; Penna, A; De Lazzari, A; Montresor, M				Bastianini, M.; Totti, C.; Penna, A.; De Lazzari, A.; Montresor, M.			Dinoflagellate cyst production in the north-western Adriatic Sea	MEDITERRANEAN MARINE SCIENCE			English	Article						Dinoflagellates; cysts; sediment traps; NW Adriatic Sea; Scrippsiella; Biecheleria	SCRIPPSIELLA-TROCHOIDEA DINOPHYCEAE; RECENT MARINE-SEDIMENTS; SP-NOV DINOPHYCEAE; SURFACE SEDIMENTS; RESTING CYSTS; TIME-SERIES; ALEXANDRIUM-CATENELLA; ENVIRONMENTAL-FACTORS; GONYAULAX-TAMARENSIS; MEDITERRANEAN SEA	A sediment trap study was conducted in the Gulf of Venice, north-western Adriatic Sea, from April to December 2005 to assess relationships between planktonic dinoflagellates and cyst production. Every month, CTD profiles and discrete samplings for phytoplankton, nutrients and particulate matter were conducted. Cyst fluxes spanned from 90 to 127,600 cysts m(-2) d(-1) and major peaks were due to a small cyst attributed to cf. Biecheleria and to calcareous cysts of Scrippsiella trochoidea. A good correspondence between cyst fluxes in sediment traps and the presence of the corresponding vegetative cells in the water column was detected for Lingulodinium polyedrum, and species of the genera Gonyaulax and Protoperidinium. A PCR method applied to surface sediment samples allowed the identification of a number of potentially harmful dinoflagellate cysts (Alexandrium minutum, A. taylorii, Lingulodinium polyedrum and Protoceratium reticulatum).	[Bastianini, M.; De Lazzari, A.] CNR, Ist Sci Marine, Castello 2737-F Arsenale Tesa 104, I-30122 Venice, Italy; [Totti, C.] Univ Politecn Marche, Dipartimento Sci Vita & Ambiente, Via Brecce Bianche, I-60131 Ancona, Italy; [Penna, A.] Univ Urbino, Dipartimento Sci Biomol, Viale Trieste 296, I-61100 Pesaro, PU, Italy; [Montresor, M.] Stn Zool Anton Dohrn, I-80121 Naples, Italy	Consiglio Nazionale delle Ricerche (CNR); Istituto di Scienze Marine (ISMAR-CNR); Marche Polytechnic University; University of Urbino; Stazione Zoologica Anton Dohrn	Bastianini, M (通讯作者)，CNR, Ist Sci Marine, Castello 2737-F Arsenale Tesa 104, I-30122 Venice, Italy.	mauro.bastianini@ismar.cnr.it	; TOTTI, Cecilia Maria/A-9178-2016	Bastianini, Mauro/0000-0001-6758-4192; Montresor, Marina/0000-0002-2475-1787; TOTTI, Cecilia Maria/0000-0002-1532-6009; DE LAZZARI, AMELIA/0000-0002-5915-5918	Italian Flagship Project RITMARE (Ricerca ITaliana per il MARE)	Italian Flagship Project RITMARE (Ricerca ITaliana per il MARE)	C. Totti and M. Montresor have contributed equally to this work. This research has been partly funded by the Italian Flagship Project RITMARE (Ricerca ITaliana per il MARE) and has been conducted in the framework of the LTER activities of the Northern Adriatic site. We thank the crews of R/V U. D'Ancona and M/B Litus. We thank Tiziana Romagnoli for the SEM images. We also thank Alfredo Boldrin and Alessandra Pugnetti for their critical reviews of this paper.	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Sci.		2016	17	3					751	765		10.12681/mms.1770	http://dx.doi.org/10.12681/mms.1770			15	Fisheries; Geosciences, Multidisciplinary; Marine & Freshwater Biology; Oceanography	Science Citation Index Expanded (SCI-EXPANDED)	Fisheries; Geology; Marine & Freshwater Biology; Oceanography	EI2KS		gold, Green Published			2025-03-11	WOS:000392316700014
B	Saraswati, PK; Srinivasan, MS	Saraswati, PK; Srinivasan, MS			Saraswati, P. K.; Srinivasan, M. S.	Saraswati, PK; Srinivasan, MS		Organic-Walled Microfossils	MICROPALEONTOLOGY: PRINCIPLES AND APPLICATIONS			English	Article; Book Chapter							DINOFLAGELLATE CYSTS; INDICATORS; MICROSCOPY; MORPHOLOGY; SEA		[Saraswati, P. K.] Indian Inst Technol, Dept Earth Sci, Bombay, Maharashtra, India; [Srinivasan, M. S.] Banaras Hindu Univ, Dept Geol, Varanasi, Uttar Pradesh, India	Indian Institute of Technology System (IIT System); Indian Institute of Technology (IIT) - Bombay; Banaras Hindu University (BHU)	Saraswati, PK (通讯作者)，Indian Inst Technol, Dept Earth Sci, Bombay, Maharashtra, India.							[Anonymous], 1974, FOSSIL LIVING DINOFL; [Anonymous], 1980, PALEOBIOLOGY PLANT P; [Anonymous], 1985, SPOROPOLLENIN DINOFL; [Anonymous], 1996, PALYNOLOGY PRINCIPLE; Crouch EM, 2003, PALAEOGEOGR PALAEOCL, V194, P387, DOI 10.1016/S0031-0182(03)00334-1; De Vernal A, 1997, GEOBIOS-LYON, V30, P905, DOI 10.1016/S0016-6995(97)80215-X; Dorning K.J., 2005, Encyclopedia of Geology, P418; Dutta S, 2006, J EARTH SYST SCI, V115, P99, DOI 10.1007/BF02703028; Dutta S, 2007, ORG GEOCHEM, V38, P1625, DOI 10.1016/j.orggeochem.2007.06.014; Ellegaard M, 2000, REV PALAEOBOT PALYNO, V109, P65, DOI 10.1016/S0034-6667(99)00045-7; Evitt W. R., 1961, Micropaleontology, V7, P385, DOI 10.2307/1484378; Jansonius J., 1978, Introduction to marine micropalaeontology, P341; Jones RobertWynn., 2006, Applied Palaeontology; Paris F., 2005, ENCY GEOLOGY, P428; Reichart GJ, 2003, MAR MICROPALEONTOL, V49, P303, DOI 10.1016/S0377-8398(03)00050-1; SARJEANT WAS, 1987, MICROPALEONTOLOGY, V33, P1, DOI 10.2307/1485525; Sluijs A, 2005, EARTH-SCI REV, V68, P281, DOI 10.1016/j.earscirev.2004.06.001; Strother PK, 2002, AM ASS STRATIGRAPHIC, P81; Talyzina NM, 2000, REV PALAEOBOT PALYNO, V108, P37, DOI 10.1016/S0034-6667(99)00032-9; Traverse A., 2007, Paleopalynology, VSecond; Williams D.B., 1971, MICROPALAEONTOLOGY O, P91; Zhou CM, 2001, PALAEONTOLOGY, V44, P1157	22	0	0	0	0	SPRINGER INTERNATIONAL PUBLISHING AG	CHAM	GEWERBESTRASSE 11, CHAM, CH-6330, SWITZERLAND			978-3-319-14574-7; 978-3-319-14573-0				2016							139	154		10.1007/978-3-319-14574-7_9	http://dx.doi.org/10.1007/978-3-319-14574-7_9	10.1007/978-3-319-14574-7		16	Paleontology	Book Citation Index– Science (BKCI-S)	Paleontology	BK3AQ					2025-03-11	WOS:000434628800010
J	Guilbaud, J; Massé, A; Wolff, FC; Jaouen, P				Guilbaud, Julie; Masse, Anthony; Wolff, Francois-Charles; Jaouen, Pascal			Porous membranes for ballast water treatment from microalgae-rich seawater	MARINE POLLUTION BULLETIN			English	Article						Ship; Ballast water; Alga; Membrane; Microfiltration; Techno-economic	UF PRETREATMENT PRIOR; REVERSE-OSMOSIS; ULTRAFILTRATION MEMBRANE; DINOFLAGELLATE CYSTS; SWRO-DESALINATION; RO MEMBRANES; FILTRATION; TEMPERATURE	The ballast waters from ships pose a major threat to oceans, notably because of the spread of microorganisms. The present study evaluates the techno-economic feasibility of implementing the membrane process to remove microalgae from seawater to be ballasted in a single step during planktonic bloom. The optimal conditions for the microfiltration of complex and reproducible synthetic seawater are a permeate flux and specific filtered volume of 100 L.h(-1).m(-2) and 75 L.m(-2).cycle(-1), respectively. Recovery of the membrane process represents about 76.6% and 62.7% of the annual cost for a cruise ship (5400 passengers) and liquefied natural gas (LNG) carrier (75,000 m(3) of liquid natural gas), followed by the membrane replacement cost (13.4% and 21.9%, respectively). The treatment costs are competitive with conventional treatments, even when the membrane process is more feasible for cruise ships due to its smaller capital cost and footprint. (C) 2015 Elsevier Ltd. All rights reserved.	[Guilbaud, Julie; Masse, Anthony; Jaouen, Pascal] Univ Nantes, LUNAM, GEPEA, CNRS,UMR 6144, F-44602 St Nazaire, France; [Wolff, Francois-Charles] Univ Nantes, LUNAM, LEMNA, EA 4272, F-44322 Nantes 3, France	Centre National de la Recherche Scientifique (CNRS); CNRS - Institute for Engineering & Systems Sciences (INSIS); Nantes Universite; Nantes Universite	Massé, A (通讯作者)，Univ Nantes, LUNAM, GEPEA, CNRS,UMR 6144, 37 Bd Univ,BP 406, F-44602 St Nazaire, France.	anthony.masse@univ-nantes.fr	anthony, masse/JVM-9157-2024					AFNOR, 2000, 872 AFNOR NF EN; AFNOR, 1997, 1484 AFNOR NF EN; AFNOR, 1999, 90117 AFNOR NFT; Aminot A., 2004, METHODES ANAL MILIEU; [Anonymous], 2007, FILTR SEPARAT, V44, P36; Bacchin P, 2006, J MEMBRANE SCI, V281, P42, DOI 10.1016/j.memsci.2006.04.014; Bessiere Y, 2005, J MEMBRANE SCI, V264, P37, DOI 10.1016/j.memsci.2005.04.018; Bolch CJS, 2007, HARMFUL ALGAE, V6, P465, DOI 10.1016/j.hal.2006.12.008; Brehant A, 2002, DESALINATION, V144, P353, DOI 10.1016/S0011-9164(02)00343-0; Bu-Rashid KA, 2007, DESALINATION, V203, P229, DOI 10.1016/j.desal.2006.04.010; Casana A., 2012, INT C DES SUST EDS C; Castaing JB, 2010, DESALINATION, V253, P71, DOI 10.1016/j.desal.2009.11.031; Castaing J.B., 2011, THESIS; Cheryan M., 1998, ULTRAFILTRATION MICR, DOI 10.1201/9781482278743; Denis C, 2009, SEP PURIF TECHNOL, V69, P37, DOI 10.1016/j.seppur.2009.06.017; Doblin MA, 2006, MAR POLLUT BULL, V52, P259, DOI 10.1016/j.marpolbul.2005.12.014; Dobroski N., 2007, ASSESSMENT EFFICACY; Gille D, 2005, DESALINATION, V182, P301, DOI 10.1016/j.desal.2005.03.020; Glucina K, 1998, DESALINATION, V118, P205, DOI 10.1016/S0011-9164(98)00131-3; Gollasch S., 2002, Ballast water management in the North-East Atlantic: Report to aid decision making on ballast water in OSPAR BDC; Gollasch S, 2007, HARMFUL ALGAE, V6, P585, DOI 10.1016/j.hal.2006.12.009; Gregg MD, 2007, HARMFUL ALGAE, V6, P567, DOI 10.1016/j.hal.2006.08.009; Guilbaud J, 2013, DESALIN WATER TREAT, V51, P416, DOI 10.1080/19443994.2012.714890; Guillard R. 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L., 1975, CULTURE MARINE INVER, P29, DOI DOI 10.1007/978-1-4615-8714-9_3; GUILLARD RR, 1962, CAN J MICROBIOL, V8, P229, DOI 10.1139/m62-029; Heijman SGJ, 2005, DESALINATION, V178, P295, DOI 10.1016/j.desal.2004.12.019; Institute of Shipping Economics and Logistics, 2010, MARKET REV ANAL FOCU; Jezowska A, 2009, DESALINATION, V245, P723, DOI 10.1016/j.desal.2009.02.043; Knops F, 2007, DESALINATION, V203, P300, DOI 10.1016/j.desal.2006.04.013; Krock B, 2009, HARMFUL ALGAE, V8, P254, DOI 10.1016/j.hal.2008.06.003; Lindholm T, 1999, HYDROBIOLOGIA, V393, P245, DOI 10.1023/A:1003563022422; National Research Council, 1996, STEMMING TIDE CONTRO, V1; Pearce GK, 2007, DESALINATION, V203, P286, DOI 10.1016/j.desal.2006.04.011; Pearce G, 2007, FILTR SEPARAT, V44, P35, DOI 10.1016/S0015-1882(07)70083-6; Pearce G, 2007, FILTR SEPARAT, V44, P30; Pitcher GC, 2007, HARMFUL ALGAE, V6, P823, DOI 10.1016/j.hal.2007.04.008; Quilez-Badia G, 2008, MAR POLLUT BULL, V56, P127, DOI 10.1016/j.marpolbul.2007.09.036; Rigby G, 2001, INT MARITIME TECHNOL, V113, P79; Teuler A, 1999, DESALINATION, V125, P89, DOI 10.1016/S0011-9164(99)00126-5; van Hoof SCJM, 2001, DESALINATION, V139, P161, DOI 10.1016/S0011-9164(01)00306-X; van Hoof SCJM, 1999, DESALINATION, V124, P231, DOI 10.1016/S0011-9164(99)00108-3; Vial D, 2003, DESALINATION, V153, P141, DOI 10.1016/S0011-9164(02)01115-3; Villanueva E., 2009, ETUDE PROCEDES RECYC; Xu J, 2008, DESALINATION, V219, P179, DOI 10.1016/j.desal.2007.04.055; Xu J, 2007, DESALINATION, V207, P216, DOI 10.1016/j.desal.2006.08.006; Zhang JD, 2006, DESALINATION, V189, P269, DOI 10.1016/j.desal.2005.07.009	46	12	13	1	39	PERGAMON-ELSEVIER SCIENCE LTD	OXFORD	THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND	0025-326X	1879-3363		MAR POLLUT BULL	Mar. Pollut. Bull.	DEC 30	2015	101	2					612	617		10.1016/j.marpolbul.2015.10.044	http://dx.doi.org/10.1016/j.marpolbul.2015.10.044			6	Environmental Sciences; Marine & Freshwater Biology	Science Citation Index Expanded (SCI-EXPANDED)	Environmental Sciences & Ecology; Marine & Freshwater Biology	CZ4XY	26517940				2025-03-11	WOS:000367107600018
J	Salgado, P; Vázquez, JA; Riobó, P; Franco, JM; Figueroa, RI; Kremp, A; Bravo, I				Salgado, Pablo; Vazquez, Jose A.; Riobo, Pilar; Franco, Jose M.; Figueroa, Rosa I.; Kremp, Anke; Bravo, Isabel			A Kinetic and Factorial Approach to Study the Effects of Temperature and Salinity on Growth and Toxin Production by the Dinoflagellate <i>Alexandrium ostenfeldii</i> from the Baltic Sea	PLOS ONE			English	Article							PARALYTIC SHELLFISH TOXINS; LACTIC-ACID BACTERIA; GENUS ALEXANDRIUM; SACCHAROMYCES-CEREVISIAE; SPIROLIDE PRODUCTION; PERUVIANUM BALECH; MENDIOLA BALECH; CYST FORMATION; DINOPHYCEAE; BLOOM	Alexandrium ostenfeldii is present in a wide variety of environments in coastal areas worldwide and is the only dinoflagellate known species that produces paralytic shellfish poisoning (PSP) toxins and two types of cyclic imines, spirolides (SPXs) and gymnodimines (GYMs). The increasing frequency of A. ostenfeldii blooms in the Baltic Sea has been attributed to the warming water in this region. To learn more about the optimal environmental conditions favoring the proliferation of A. ostenfeldii and its complex toxicity, the effects of temperature and salinity on the kinetics of both the growth and the net toxin production of this species were examined using a factorial design and a response-surface analysis (RSA). The results showed that the growth of Baltic A. ostenfeldii occurs over a wide range of temperatures and salinities (12.5-25.5 degrees C and 5-21, respectively), with optimal growth conditions achieved at a temperature of 25.5 degrees C and a salinity of 11.2. Together with the finding that a salinity > 21 was the only growth-limiting factor detected for this strain, this study provides important insights into the autecology and population distribution of this species in the Baltic Sea. The presence of PSP toxins, including gonyautoxin (GTX)-3, GTX-2, and saxitoxin (STX), and GYMs (GYM-A and GYM-B/-C analogues) was detected under all temperature and salinity conditions tested and in the majority of the cases was concomitant with both the exponential growth and stationary phases of the dinoflagellate's growth cycle. Toxin concentrations were maximal at temperatures and salinities of 20.9 degrees C and 17 for the GYM-A analogue and > 19 degrees C and 15 for PSP toxins, respectively. The ecological implications of the optimal conditions for growth and toxin production of A. ostenfeldii in the Baltic Sea are discussed.	[Salgado, Pablo] Inst Fomento Pesquero IFOP, Dept Medio Ambiente, Div Invest Acuicultura, Punta Arenas, Chile; [Vazquez, Jose A.] CSIC, IIM, Grp Reciclado & Valorizac Mat Residuales REVAL, Vigo, Spain; [Riobo, Pilar; Franco, Jose M.] CSIC, IIM, Vigo, Spain; [Salgado, Pablo; Figueroa, Rosa I.; Bravo, Isabel] Ctr Oceanog Vigo, IEO, Vigo, Spain; [Kremp, Anke] Finnish Environm Inst SYKE, Ctr Marine Res, Helsinki, Finland	Instituto de Fomento Pesquero (Valparaiso); Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM); Consejo Superior de Investigaciones Cientificas (CSIC); CSIC - Instituto de Investigaciones Marinas (IIM); Spanish Institute of Oceanography; Finnish Environment Institute	Salgado, P (通讯作者)，Inst Fomento Pesquero IFOP, Dept Medio Ambiente, Div Invest Acuicultura, Punta Arenas, Chile.	pablo.salgado@ifop.cl	Bravo, Isabel/D-3147-2012; Salgado, Pablo/KMA-0636-2024; Vazquez Alvarez, Jose Antonio/K-5938-2014; Figueroa, Rosa/M-7598-2015; Riobo, Pilar/K-1945-2017	Vazquez Alvarez, Jose Antonio/0000-0002-1122-4726; Figueroa, Rosa/0000-0001-9944-7993; Bravo, Isabel/0000-0003-3764-745X; Salgado, Pablo/0000-0002-4168-3675; Riobo, Pilar/0000-0002-1921-6229	CCVIEO project; Ministry of Economy and Competitiveness [CICAN-2013-40671-R]	CCVIEO project; Ministry of Economy and Competitiveness	This work is a contribution of the Unidad Asociada "Microalgas Nocivas" (CSIC-IEO) and was financially supported by the CCVIEO project and CICAN-2013-40671-R (Ministry of Economy and Competitiveness). P. Salgado is a researcher at IFOP, which has provided financial support for his doctoral stay.	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J	Kretschmann, J; Filipowicz, NH; Owsianny, PM; Zinssmeister, C; Gottschling, M				Kretschmann, Juliane; Filipowicz, Natalia H.; Owsianny, Pawel M.; Zinssmeister, Carmen; Gottschling, Marc			Taxonomic Clarification of the Unusual Dinophyte <i>Gymnodinium</i> <i>limneticum</i> WOlOSZ. (Gymnodiniaceae) from the Tatra Mountains	PROTIST			English	Article						Cyst; dinoflagellate; epitype; morphology; phylogeny; taxonomy	FRESH-WATER DINOFLAGELLATE; WESTERN KOREA MORPHOLOGY; GEN. NOV DINOPHYCEAE; RDNA-BASED PHYLOGENY; COMB. NOV; SPINIFERODINIUM-GALEIFORME; MOLECULAR CHARACTERIZATION; SCRIPPSIELLA-TROCHOIDEA; ELECTRON-MICROSCOPY; SPECIES BOUNDARIES	The Gymnodiniaceae -even in a strict sense-comprise a vast diversity of dinophytes regarding morphology and ecology. Taxonomy and nomenclature of their constituent species remain problematic, although crucial to fully explore the biology of the group. Here, we present the rarely documented dinophyte Gymnodinium limneticum from its type locality at Lake Morskie Oko in Poland, for which we established strains and made extensive morphological studies. The species was unusual in exhibiting capsoid cells as predominant life-history stage, which were embedded and dividing in extensive mucilage leading to an enkaptic pseudocolonial system. We also generated ribosomal RNA sequences that were included in a comprehensive molecular phylogeny. Our species was clearly identified as a member of the Gymnodiniaceae s.str. but within the lineage, it was only distantly related to the type species of Gymnodinium, G. fuscum. Rather, it constituted a monophyletic group together with species assigned to Spiniferodinium and as a nomenclatural result, we propose two new combinations (i.e., Sp. limneticum comb. nov., Sp. palustre comb. nov.). As Spiniferodinium now includes dinophyte species inhabiting marine or freshwater environments as well, our investigations may provide evidence for an evolutionary scenario with corresponding transitions being more frequent than considered before. (C) 2015 Elsevier GmbH. All rights reserved.	[Kretschmann, Juliane; Gottschling, Marc] Univ Munich, GeoBioctr, Dept Biol Systemat Bot & Mykol, D-80638 Munich, Germany; [Filipowicz, Natalia H.] Med Univ Gdansk, Dept Biol & Pharmaceut Bot, PL-80416 Gdansk, Poland; [Owsianny, Pawel M.] Adam Mickiewicz Univ, Fac Geog & Geol Sci, Inst Geoecol & Geoinformat, PL-61680 Poznan, Poland; [Owsianny, Pawel M.] Adam Mickiewicz Univ, Didact & Sci Branch Pila, PL-64920 Pila, Poland; [Zinssmeister, Carmen] German Ctr Marine Biodivers Res DZMB, Senckenberg Meer, D-26382 Wilhelmshaven, Germany	University of Munich; Fahrenheit Universities; Medical University Gdansk; Adam Mickiewicz University; Adam Mickiewicz University; Leibniz Association; Senckenberg Gesellschaft fur Naturforschung (SGN)	Gottschling, M (通讯作者)，Univ Munich, GeoBioctr, Dept Biol Systemat Bot & Mykol, Menzinger Str 67, D-80638 Munich, Germany.	gottschling@bio.lmu.de	Gottschling, Marc/K-2186-2014; Filipowicz, Natalia/KYO-9817-2024	Owsianny, Pawel Michal/0000-0003-0517-5881	Munchener Universitatsgesellschaft; National Sciences Centre, Poland (NCN) [N N305 273840]	Munchener Universitatsgesellschaft; National Sciences Centre, Poland (NCN)	Field work in the area of the Tatra National Park was done with the permission of the Ministry of Environment of the Republic of Poland (no. 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